CDG55_04380 85a797beaf4d9eb9161b51f2a2cb05d1 498 Pfam PF00361 Proton-conducting membrane transporter 127 423 1.8E-72 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04380 85a797beaf4d9eb9161b51f2a2cb05d1 498 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 8 478 17.375 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 CDG55_04380 85a797beaf4d9eb9161b51f2a2cb05d1 498 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 11 478 5.1E-122 T 13-10-2018 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 CDG55_04380 85a797beaf4d9eb9161b51f2a2cb05d1 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 133 152 6.2E-6 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04380 85a797beaf4d9eb9161b51f2a2cb05d1 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 164 188 6.2E-6 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04380 85a797beaf4d9eb9161b51f2a2cb05d1 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 324 343 6.2E-6 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04380 85a797beaf4d9eb9161b51f2a2cb05d1 498 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 380 406 6.2E-6 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 Pfam PF00375 Sodium:dicarboxylate symporter family 25 417 3.5E-106 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 PRINTS PR00173 Glutamate-aspartate symporter signature 23 43 4.9E-28 T 13-10-2018 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 PRINTS PR00173 Glutamate-aspartate symporter signature 343 362 4.9E-28 T 13-10-2018 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 PRINTS PR00173 Glutamate-aspartate symporter signature 208 227 4.9E-28 T 13-10-2018 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 PRINTS PR00173 Glutamate-aspartate symporter signature 161 183 4.9E-28 T 13-10-2018 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 PRINTS PR00173 Glutamate-aspartate symporter signature 90 115 4.9E-28 T 13-10-2018 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 PRINTS PR00173 Glutamate-aspartate symporter signature 308 334 4.9E-28 T 13-10-2018 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 SUPERFAMILY SSF118215 25 418 3.53E-116 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 Gene3D G3DSA:1.10.3860.10 17 433 6.5E-120 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CDG55_13225 424a8230275a67d447f19e19ceb50422 440 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 18 440 36.499 T 13-10-2018 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 CDG55_14300 237d11566ab9842088436d9458c1f45c 279 Gene3D G3DSA:3.40.50.1980 22 172 1.5E-22 T 13-10-2018 CDG55_14300 237d11566ab9842088436d9458c1f45c 279 SUPERFAMILY SSF53807 20 268 5.4E-40 T 13-10-2018 CDG55_14300 237d11566ab9842088436d9458c1f45c 279 Pfam PF01297 Zinc-uptake complex component A periplasmic 23 231 1.7E-26 T 13-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 CDG55_14300 237d11566ab9842088436d9458c1f45c 279 Gene3D G3DSA:3.40.50.1980 173 276 3.2E-10 T 13-10-2018 CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 430 32.121 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 SUPERFAMILY SSF52954 343 427 1.11E-15 T 13-10-2018 CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 Pfam PF13393 Histidyl-tRNA synthetase 9 316 9.6E-44 T 13-10-2018 CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 Gene3D G3DSA:3.40.50.800 330 427 5.5E-26 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 PIRSF PIRSF001549 1 428 1.0E-120 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 Gene3D G3DSA:3.30.930.10 2 329 1.8E-110 T 13-10-2018 CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 Pfam PF03129 Anticodon binding domain 346 426 3.1E-11 T 13-10-2018 IPR004154 Anticodon-binding CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 SUPERFAMILY SSF55681 7 324 7.05E-95 T 13-10-2018 CDG55_12070 6d80c9c9d3c378b775549c051540b70f 430 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 416 5.6E-147 T 13-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 CDG55_06050 6d68c6c9d086c621bc82f279fbeccb60 349 Pfam PF00591 Glycosyl transferase family, a/b domain 76 330 4.5E-100 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_06050 6d68c6c9d086c621bc82f279fbeccb60 349 SUPERFAMILY SSF47648 1 70 5.23E-20 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_06050 6d68c6c9d086c621bc82f279fbeccb60 349 Gene3D G3DSA:1.20.970.10 1 70 3.0E-32 T 13-10-2018 CDG55_06050 6d68c6c9d086c621bc82f279fbeccb60 349 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 339 37.803 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 CDG55_06050 6d68c6c9d086c621bc82f279fbeccb60 349 SUPERFAMILY SSF52418 75 343 1.57E-87 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_06050 6d68c6c9d086c621bc82f279fbeccb60 349 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 337 2.9E-119 T 13-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 CDG55_06050 6d68c6c9d086c621bc82f279fbeccb60 349 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 66 4.2E-18 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_06050 6d68c6c9d086c621bc82f279fbeccb60 349 Gene3D G3DSA:3.40.1030.10 71 349 3.2E-102 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_03110 5cc94ab11932c8fb531d1b1db3be3d16 212 Gene3D G3DSA:2.40.30.10 132 212 1.1E-14 T 13-10-2018 CDG55_03110 5cc94ab11932c8fb531d1b1db3be3d16 212 Pfam PF00297 Ribosomal protein L3 49 185 1.4E-14 T 13-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03110 5cc94ab11932c8fb531d1b1db3be3d16 212 SUPERFAMILY SSF50447 2 211 8.39E-79 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_03110 5cc94ab11932c8fb531d1b1db3be3d16 212 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 210 38.731 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03110 5cc94ab11932c8fb531d1b1db3be3d16 212 Gene3D G3DSA:2.40.50.620 34 97 2.2E-15 T 13-10-2018 CDG55_03110 5cc94ab11932c8fb531d1b1db3be3d16 212 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 207 6.6E-87 T 13-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06395 523532abe67bcb902a1fa73924d1c43b 321 SUPERFAMILY SSF51735 99 286 1.19E-54 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_06395 523532abe67bcb902a1fa73924d1c43b 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 285 3.1E-56 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDG55_06395 523532abe67bcb902a1fa73924d1c43b 321 Gene3D G3DSA:3.40.50.720 3 311 4.2E-104 T 13-10-2018 CDG55_06395 523532abe67bcb902a1fa73924d1c43b 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 317 1.5E-26 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CDG55_06395 523532abe67bcb902a1fa73924d1c43b 321 SUPERFAMILY SSF52283 1 132 2.46E-26 T 13-10-2018 CDG55_06395 523532abe67bcb902a1fa73924d1c43b 321 Gene3D G3DSA:3.40.50.720 96 285 4.2E-104 T 13-10-2018 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 Gene3D G3DSA:2.20.28.60 1 52 5.1E-24 T 13-10-2018 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 Gene3D G3DSA:1.10.580.10 59 411 5.4E-146 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 PRINTS PR00143 Citrate synthase signature 167 180 3.3E-55 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 PRINTS PR00143 Citrate synthase signature 360 376 3.3E-55 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 PRINTS PR00143 Citrate synthase signature 244 272 3.3E-55 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 PRINTS PR00143 Citrate synthase signature 297 317 3.3E-55 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 PRINTS PR00143 Citrate synthase signature 380 394 3.3E-55 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 PRINTS PR00143 Citrate synthase signature 222 237 3.3E-55 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 16 422 2.1E-241 T 13-10-2018 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 SUPERFAMILY SSF48256 6 422 3.14E-165 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 PIRSF PIRSF001369 40 424 1.7E-170 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 Pfam PF00285 Citrate synthase, C-terminal domain 48 411 3.7E-135 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_10920 7b9f79e0eacc7dafd6e13f9decfac432 424 Gene3D G3DSA:1.10.230.10 271 377 5.4E-146 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 SUPERFAMILY SSF100920 384 539 1.57E-59 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 Gene3D G3DSA:3.30.420.40 179 365 1.1E-164 T 13-10-2018 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 Gene3D G3DSA:2.60.34.10 382 522 1.5E-64 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 SUPERFAMILY SSF53067 186 381 1.69E-66 T 13-10-2018 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 Pfam PF00012 Hsp70 protein 4 603 2.1E-259 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 Gene3D G3DSA:3.30.420.40 5 378 1.1E-164 T 13-10-2018 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 Gene3D G3DSA:3.90.640.10 228 315 1.1E-164 T 13-10-2018 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 SUPERFAMILY SSF53067 2 182 5.18E-65 T 13-10-2018 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 Gene3D G3DSA:1.20.1270.10 523 606 1.7E-20 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 7.5E-283 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 SUPERFAMILY SSF100934 534 609 1.92E-10 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 387 406 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 137 157 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 468 484 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 53 61 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 197 207 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 364 384 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 PRINTS PR00301 70kDa heat shock protein signature 333 349 1.2E-76 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_15020 a5d693dbae88b27742a84f512e27e02e 647 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 642 36.023 T 13-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 SUPERFAMILY SSF47819 292 368 4.91E-14 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 Pfam PF00570 HRDC domain 211 276 2.0E-15 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 Gene3D G3DSA:1.10.150.80 295 369 8.6E-8 T 13-10-2018 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 SUPERFAMILY SSF53098 3 206 7.97E-51 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 SMART SM00474 2 169 2.6E-17 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 Gene3D G3DSA:3.30.420.10 1 190 1.8E-49 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 Gene3D G3DSA:1.10.150.80 197 288 5.3E-14 T 13-10-2018 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 Pfam PF01612 3'-5' exonuclease 3 168 4.0E-24 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 SUPERFAMILY SSF47819 197 293 7.63E-18 T 13-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 CDG55_08660 ffd7c4f1eca712fdee56492ad7df20b5 380 SMART SM00341 207 286 0.0021 T 13-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 CDG55_09340 0218505b82d4adb3d4a372d55492dcd1 299 Gene3D G3DSA:3.40.190.290 94 293 2.6E-48 T 13-10-2018 CDG55_09340 0218505b82d4adb3d4a372d55492dcd1 299 Pfam PF03466 LysR substrate binding domain 90 294 5.0E-34 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_09340 0218505b82d4adb3d4a372d55492dcd1 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.0E-16 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_09340 0218505b82d4adb3d4a372d55492dcd1 299 SUPERFAMILY SSF46785 4 114 1.4E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_09340 0218505b82d4adb3d4a372d55492dcd1 299 SUPERFAMILY SSF53850 90 297 1.59E-37 T 13-10-2018 CDG55_09340 0218505b82d4adb3d4a372d55492dcd1 299 Gene3D G3DSA:1.10.10.10 1 84 3.1E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 PRINTS PR01100 Shikimate kinase family signature 21 36 7.7E-27 T 13-10-2018 CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 PRINTS PR01100 Shikimate kinase family signature 91 100 7.7E-27 T 13-10-2018 CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 PRINTS PR01100 Shikimate kinase family signature 73 81 7.7E-27 T 13-10-2018 CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 PRINTS PR01100 Shikimate kinase family signature 112 129 7.7E-27 T 13-10-2018 CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 PRINTS PR01100 Shikimate kinase family signature 45 58 7.7E-27 T 13-10-2018 CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 Gene3D G3DSA:3.40.50.300 12 187 6.7E-60 T 13-10-2018 CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 Hamap MF_00109 Shikimate kinase [aroK]. 18 184 30.402 T 13-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 Pfam PF01202 Shikimate kinase 27 183 4.1E-56 T 13-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 CDG55_02485 72804da6f5453e896e635e873d3d3bf4 188 SUPERFAMILY SSF52540 20 183 1.89E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 Gene3D G3DSA:1.10.601.10 24 130 4.7E-27 T 13-10-2018 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 PRINTS PR00046 Major sigma-70 factor signature 256 271 9.7E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 PRINTS PR00046 Major sigma-70 factor signature 82 95 9.7E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 PRINTS PR00046 Major sigma-70 factor signature 237 249 9.7E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 PRINTS PR00046 Major sigma-70 factor signature 271 282 9.7E-18 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 Pfam PF04542 Sigma-70 region 2 58 127 2.7E-16 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 6 288 52.296 T 13-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 Pfam PF00140 Sigma-70 factor, region 1.2 21 45 1.1E-5 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 SUPERFAMILY SSF88946 20 127 9.81E-40 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 20 287 4.0E-123 T 13-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 SUPERFAMILY SSF88659 194 286 2.99E-18 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 Pfam PF04545 Sigma-70, region 4 233 283 6.9E-15 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 54 286 1.9E-32 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CDG55_07995 f13696bbfd0e7bd78e2a9414d34216e0 289 Gene3D G3DSA:1.10.10.10 216 289 3.4E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_02965 2acb2f8cf65192b7c5b6ea65808f52dd 456 SMART SM00729 53 275 5.2E-38 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CDG55_02965 2acb2f8cf65192b7c5b6ea65808f52dd 456 SUPERFAMILY SSF102114 4 441 5.89E-118 T 13-10-2018 CDG55_02965 2acb2f8cf65192b7c5b6ea65808f52dd 456 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 456 2.5E-130 T 13-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 CDG55_02965 2acb2f8cf65192b7c5b6ea65808f52dd 456 Pfam PF04055 Radical SAM superfamily 58 229 1.6E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_02965 2acb2f8cf65192b7c5b6ea65808f52dd 456 PIRSF PIRSF000167 2 452 2.4E-142 T 13-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 CDG55_02965 2acb2f8cf65192b7c5b6ea65808f52dd 456 Gene3D G3DSA:3.80.30.20 1 366 6.2E-104 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CDG55_02965 2acb2f8cf65192b7c5b6ea65808f52dd 456 Gene3D G3DSA:1.10.10.920 367 456 1.4E-17 T 13-10-2018 CDG55_14995 34d75a1db602856bfce0d298c40acaaa 184 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 22 179 2.7E-48 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CDG55_14995 34d75a1db602856bfce0d298c40acaaa 184 PIRSF PIRSF001467 5 184 1.4E-30 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 CDG55_14995 34d75a1db602856bfce0d298c40acaaa 184 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 2.3E-13 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CDG55_14995 34d75a1db602856bfce0d298c40acaaa 184 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 2.3E-13 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CDG55_14995 34d75a1db602856bfce0d298c40acaaa 184 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 74 2.3E-13 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CDG55_14995 34d75a1db602856bfce0d298c40acaaa 184 SUPERFAMILY SSF50891 19 180 3.51E-60 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_14995 34d75a1db602856bfce0d298c40acaaa 184 Gene3D G3DSA:2.40.100.10 19 181 1.5E-62 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_12685 e9ddf08f7bae1c552f7765b771de0c92 163 Gene3D G3DSA:3.30.70.1150 83 163 5.3E-30 T 13-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal CDG55_12685 e9ddf08f7bae1c552f7765b771de0c92 163 SUPERFAMILY SSF55021 79 162 3.14E-27 T 13-10-2018 CDG55_12685 e9ddf08f7bae1c552f7765b771de0c92 163 SUPERFAMILY SSF55021 2 76 3.21E-22 T 13-10-2018 CDG55_12685 e9ddf08f7bae1c552f7765b771de0c92 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 5.0E-37 T 13-10-2018 CDG55_12685 e9ddf08f7bae1c552f7765b771de0c92 163 Gene3D G3DSA:3.30.70.260 1 78 2.1E-34 T 13-10-2018 CDG55_12685 e9ddf08f7bae1c552f7765b771de0c92 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 5.6E-28 T 13-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CDG55_12685 e9ddf08f7bae1c552f7765b771de0c92 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 1.2E-63 T 13-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CDG55_12685 e9ddf08f7bae1c552f7765b771de0c92 163 Pfam PF13710 ACT domain 13 73 2.7E-17 T 13-10-2018 CDG55_09930 76bdd47d9a7d20218bb50b60ea0ddd0d 231 Gene3D G3DSA:1.10.3720.10 21 230 1.8E-44 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_09930 76bdd47d9a7d20218bb50b60ea0ddd0d 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 63 228 1.3E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_09930 76bdd47d9a7d20218bb50b60ea0ddd0d 231 SUPERFAMILY SSF161098 25 219 4.97E-42 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_01450 c3f55e8371a84dc338eb75c7c62f6539 239 Pfam PF01259 SAICAR synthetase 7 231 2.5E-65 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_01450 c3f55e8371a84dc338eb75c7c62f6539 239 SUPERFAMILY SSF56104 2 232 9.48E-81 T 13-10-2018 CDG55_01450 c3f55e8371a84dc338eb75c7c62f6539 239 Gene3D G3DSA:3.30.200.20 7 231 3.0E-94 T 13-10-2018 CDG55_01450 c3f55e8371a84dc338eb75c7c62f6539 239 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 31.527 T 13-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_01450 c3f55e8371a84dc338eb75c7c62f6539 239 Gene3D G3DSA:3.30.470.20 85 220 3.0E-94 T 13-10-2018 CDG55_01450 c3f55e8371a84dc338eb75c7c62f6539 239 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 4 234 8.5E-79 T 13-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 SUPERFAMILY SSF53955 149 345 6.75E-68 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 11 735 1.4E-238 T 13-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 Gene3D G3DSA:1.10.3810.10 145 347 7.3E-247 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 157 694 3.4E-155 T 13-10-2018 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 Pfam PF14814 Bifunctional transglycosylase second domain 58 141 1.9E-21 T 13-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 Gene3D G3DSA:3.30.2060.10 56 144 7.3E-247 T 13-10-2018 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 Gene3D G3DSA:3.40.710.10 48 705 7.3E-247 T 13-10-2018 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 Pfam PF00905 Penicillin binding protein transpeptidase domain 418 689 1.6E-23 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 Pfam PF00912 Transglycosylase 153 323 1.0E-59 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 PIRSF PIRSF002799 2 780 4.9E-303 T 13-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_07845 74552797c57e777aeafeaa0d8ffa385f 802 SUPERFAMILY SSF56601 305 744 7.58E-115 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_12140 9200baeb54114d6b47401712cadf2de5 128 Pfam PF00380 Ribosomal protein S9/S16 8 128 4.5E-44 T 13-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 CDG55_12140 9200baeb54114d6b47401712cadf2de5 128 Gene3D G3DSA:3.30.230.10 2 128 3.6E-50 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_12140 9200baeb54114d6b47401712cadf2de5 128 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 128 31.063 T 13-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid CDG55_12140 9200baeb54114d6b47401712cadf2de5 128 SUPERFAMILY SSF54211 4 128 1.4E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_02100 ee328c6af66a1bb8275041af2d4018d6 195 Gene3D G3DSA:3.40.50.150 1 195 1.6E-46 T 13-10-2018 CDG55_02100 ee328c6af66a1bb8275041af2d4018d6 195 Pfam PF13649 Methyltransferase domain 41 129 1.3E-13 T 13-10-2018 CDG55_02100 ee328c6af66a1bb8275041af2d4018d6 195 SUPERFAMILY SSF53335 7 169 4.62E-26 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_09770 43687ca6a0fd3c7496f203b5837971e5 439 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 437 1.2E-169 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDG55_09770 43687ca6a0fd3c7496f203b5837971e5 439 Pfam PF00709 Adenylosuccinate synthetase 5 431 1.2E-168 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDG55_09770 43687ca6a0fd3c7496f203b5837971e5 439 SMART SM00788 4 432 1.8E-283 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDG55_09770 43687ca6a0fd3c7496f203b5837971e5 439 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 439 203.917 T 13-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 CDG55_09770 43687ca6a0fd3c7496f203b5837971e5 439 Gene3D G3DSA:3.40.440.10 6 250 4.2E-99 T 13-10-2018 CDG55_09770 43687ca6a0fd3c7496f203b5837971e5 439 Gene3D G3DSA:3.90.170.10 268 439 8.4E-62 T 13-10-2018 CDG55_09770 43687ca6a0fd3c7496f203b5837971e5 439 SUPERFAMILY SSF52540 3 437 2.12E-167 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09770 43687ca6a0fd3c7496f203b5837971e5 439 Gene3D G3DSA:1.10.300.10 102 202 4.2E-99 T 13-10-2018 CDG55_06115 6cff0a033ed95c493cdb60305d2751ed 411 Pfam PF00155 Aminotransferase class I and II 32 385 1.4E-73 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDG55_06115 6cff0a033ed95c493cdb60305d2751ed 411 Gene3D G3DSA:3.40.640.10 64 286 1.6E-134 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_06115 6cff0a033ed95c493cdb60305d2751ed 411 SUPERFAMILY SSF53383 4 392 2.82E-117 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_06115 6cff0a033ed95c493cdb60305d2751ed 411 Gene3D G3DSA:3.90.1150.10 27 387 1.6E-134 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_05090 b37dd620d0ef0bfac105bebf5849f00f 270 Gene3D G3DSA:3.40.50.300 1 259 9.4E-72 T 13-10-2018 CDG55_05090 b37dd620d0ef0bfac105bebf5849f00f 270 Pfam PF13614 AAA domain 3 166 6.8E-22 T 13-10-2018 IPR025669 AAA domain CDG55_05090 b37dd620d0ef0bfac105bebf5849f00f 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 268 3.5E-106 T 13-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 CDG55_05090 b37dd620d0ef0bfac105bebf5849f00f 270 PIRSF PIRSF003092 1 270 3.2E-88 T 13-10-2018 IPR025501 ATP binding protein MinD CDG55_05090 b37dd620d0ef0bfac105bebf5849f00f 270 SUPERFAMILY SSF52540 2 267 1.51E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 SUPERFAMILY SSF56719 388 618 2.14E-77 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 SUPERFAMILY SSF54211 217 382 6.83E-44 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 SUPERFAMILY SSF55874 3 214 1.24E-60 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 Gene3D G3DSA:3.30.565.10 1 215 1.7E-71 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 479 495 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 497 514 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 517 529 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 30 45 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 108 122 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 266 279 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 414 428 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 559 575 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR00418 DNA topoisomerase II family signature 65 78 1.0E-59 T 13-10-2018 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 Pfam PF01751 Toprim domain 413 506 2.3E-12 T 13-10-2018 IPR006171 TOPRIM domain CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 555 617 4.3E-23 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 170 1.4E-18 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 1 625 46.415 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 Gene3D G3DSA:3.40.50.670 389 620 1.0E-90 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 Gene3D G3DSA:3.30.230.10 216 388 1.7E-52 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 SMART SM00387 26 173 7.5E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 SMART SM00433 33 621 1.6E-203 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 2 621 3.5E-287 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 Pfam PF00204 DNA gyrase B 218 385 5.0E-40 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 134 148 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 25 38 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 581 595 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01650 6ea557be6177c959fdb841f78a5c109e 627 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 2.0E-93 T 13-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_12340 7284a4ba187766cbe14a2d98637ea879 161 Pfam PF02130 Uncharacterized protein family UPF0054 23 150 6.9E-36 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CDG55_12340 7284a4ba187766cbe14a2d98637ea879 161 SUPERFAMILY SSF55486 15 158 8.06E-44 T 13-10-2018 CDG55_12340 7284a4ba187766cbe14a2d98637ea879 161 Gene3D G3DSA:3.40.390.30 1 161 5.5E-48 T 13-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 CDG55_12340 7284a4ba187766cbe14a2d98637ea879 161 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 41 151 5.4E-35 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CDG55_12340 7284a4ba187766cbe14a2d98637ea879 161 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 154 22.68 T 13-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 Gene3D G3DSA:3.30.2130.10 259 423 7.3E-60 T 13-10-2018 CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 SUPERFAMILY SSF55021 260 337 8.92E-19 T 13-10-2018 CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 Pfam PF01842 ACT domain 279 336 1.2E-11 T 13-10-2018 IPR002912 ACT domain CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 414 1.4E-130 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 Pfam PF00696 Amino acid kinase family 3 229 1.3E-50 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 SUPERFAMILY SSF53633 4 254 8.9E-75 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 Gene3D G3DSA:3.40.1160.10 1 258 9.5E-87 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 SUPERFAMILY SSF55021 344 416 2.37E-24 T 13-10-2018 CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 Pfam PF13840 ACT domain 348 410 1.1E-17 T 13-10-2018 IPR027795 CASTOR, ACT domain CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 PIRSF PIRSF000726 1 60 1.9E-20 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 PIRSF PIRSF000726 53 422 3.8E-139 T 13-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CDG55_09800 e7ff30017106ca9179ec41c19fcbd373 426 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 62 414 1.3E-111 T 13-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 TIGRFAM TIGR00422 valS: valine--tRNA ligase 11 945 0.0 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Pfam PF08264 Anticodon-binding domain of tRNA 686 834 8.3E-40 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 PRINTS PR00986 Valyl-tRNA synthetase signature 512 530 9.2E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 9.2E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 PRINTS PR00986 Valyl-tRNA synthetase signature 375 388 9.2E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 PRINTS PR00986 Valyl-tRNA synthetase signature 475 496 9.2E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 PRINTS PR00986 Valyl-tRNA synthetase signature 243 260 9.2E-37 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Gene3D G3DSA:1.10.730.10 593 831 3.1E-71 T 13-10-2018 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 SUPERFAMILY SSF52374 10 653 3.33E-138 T 13-10-2018 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 22 643 2.4E-211 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Gene3D G3DSA:3.90.740.10 211 252 8.1E-7 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Gene3D G3DSA:3.90.740.10 253 327 6.1E-10 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Gene3D G3DSA:3.40.50.620 11 210 9.1E-68 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Gene3D G3DSA:3.40.50.620 342 567 2.2E-70 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 SUPERFAMILY SSF47323 654 913 8.22E-68 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 SUPERFAMILY SSF50677 197 369 1.02E-54 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Gene3D G3DSA:1.10.287.380 891 963 8.8E-21 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 898 962 3.7E-20 T 13-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 Hamap MF_02004 Valine--tRNA ligase [valS]. 10 963 15.956 T 13-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 CDG55_11100 52cfeb46bd8032a6db9f740bef8b9a9b 965 SUPERFAMILY SSF46589 898 962 1.05E-15 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CDG55_13275 90364b039122a9785a43af3f5cb968b0 313 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 78 312 38.71 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CDG55_13275 90364b039122a9785a43af3f5cb968b0 313 SUPERFAMILY SSF53335 70 292 2.01E-49 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_13275 90364b039122a9785a43af3f5cb968b0 313 Pfam PF01209 ubiE/COQ5 methyltransferase family 82 312 5.1E-100 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CDG55_13275 90364b039122a9785a43af3f5cb968b0 313 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 87 312 5.7E-83 T 13-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 CDG55_13275 90364b039122a9785a43af3f5cb968b0 313 Gene3D G3DSA:3.40.50.150 93 313 5.2E-75 T 13-10-2018 CDG55_12335 10bb8f00b83d280fec7ce515b8d0d644 358 Pfam PF02562 PhoH-like protein 118 321 1.4E-95 T 13-10-2018 IPR003714 PhoH-like protein GO:0005524 CDG55_12335 10bb8f00b83d280fec7ce515b8d0d644 358 SUPERFAMILY SSF52540 117 293 9.87E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12335 10bb8f00b83d280fec7ce515b8d0d644 358 SUPERFAMILY SSF54791 12 78 8.66E-5 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CDG55_12335 10bb8f00b83d280fec7ce515b8d0d644 358 Gene3D G3DSA:3.40.50.300 115 321 3.3E-75 T 13-10-2018 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 SUPERFAMILY SSF52540 137 438 1.51E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 PIRSF PIRSF006485 1 440 5.3E-174 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 352 432 2.2E-26 T 13-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 Gene3D G3DSA:3.40.50.300 1 160 1.7E-43 T 13-10-2018 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 Pfam PF01926 50S ribosome-binding GTPase 179 296 1.2E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 Pfam PF01926 50S ribosome-binding GTPase 5 119 5.5E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 Gene3D G3DSA:3.30.300.20 352 434 3.1E-20 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 SUPERFAMILY SSF52540 4 168 3.41E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 Hamap MF_00195 GTPase Der [der]. 2 435 37.954 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 Gene3D G3DSA:3.40.50.300 171 349 1.3E-48 T 13-10-2018 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 432 2.1E-178 T 13-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.1E-8 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 1.1E-8 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 178 339 8.8E-24 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_12055 bd051bd501fc9935789b98bc44eb23fb 469 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 158 9.9E-22 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 SUPERFAMILY SSF54991 694 791 2.75E-28 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 SMART SM00873 211 384 4.5E-90 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 SUPERFAMILY SSF50249 38 197 8.08E-52 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 791 6.0E-257 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Gene3D G3DSA:3.30.56.10 7 180 1.7E-72 T 13-10-2018 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 SMART SM00896 698 791 5.9E-38 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Gene3D G3DSA:2.40.50.140 39 154 1.7E-72 T 13-10-2018 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 SUPERFAMILY SSF46955 404 475 2.47E-16 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 785 44.313 T 13-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 SMART SM00874 402 471 1.0E-23 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 SUPERFAMILY SSF56037 202 393 6.54E-70 T 13-10-2018 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Gene3D G3DSA:3.50.40.10 197 393 8.8E-74 T 13-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Gene3D G3DSA:3.30.56.10 402 476 3.5E-22 T 13-10-2018 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Pfam PF03147 Ferredoxin-fold anticodon binding domain 698 791 8.9E-27 T 13-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 SUPERFAMILY SSF55681 467 687 8.95E-45 T 13-10-2018 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Pfam PF03484 tRNA synthetase B5 domain 405 471 7.7E-17 T 13-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Gene3D G3DSA:3.30.930.10 487 688 2.5E-51 T 13-10-2018 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Pfam PF03483 B3/4 domain 212 384 4.3E-67 T 13-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Pfam PF01588 Putative tRNA binding domain 45 145 6.2E-27 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CDG55_03920 306cae94f61e0a70dbf8fd8df1538bb2 793 Gene3D G3DSA:3.30.70.380 699 792 1.4E-27 T 13-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 SUPERFAMILY SSF51971 334 518 2.0E-40 T 13-10-2018 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 Gene3D G3DSA:3.40.50.720 376 669 7.4E-107 T 13-10-2018 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 331 2.2E-79 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 376 638 5.8E-25 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 SUPERFAMILY SSF51905 463 654 4.46E-14 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 Gene3D G3DSA:3.50.50.60 472 628 7.4E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 499 517 2.6E-12 T 13-10-2018 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 378 397 2.6E-12 T 13-10-2018 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 460 478 2.6E-12 T 13-10-2018 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 SUPERFAMILY SSF51395 3 363 1.01E-110 T 13-10-2018 CDG55_06655 c9117d73ae122a58c3a18c571845598c 676 Gene3D G3DSA:3.20.20.70 3 369 2.7E-124 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 6.2E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 6.2E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 6.2E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 6.2E-15 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 Gene3D G3DSA:1.20.5.1150 16 54 1.2E-20 T 13-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 Pfam PF01165 Ribosomal protein S21 3 55 3.9E-22 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 4.2E-24 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 44 5.0E-10 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06425 a15eabe873f6a04d0db781b54dbfadb4 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.252 T 13-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_07225 7412bd942695ffcfe8048ef9bbe4fcf5 335 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 333 1.5E-128 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDG55_07225 7412bd942695ffcfe8048ef9bbe4fcf5 335 Gene3D G3DSA:3.20.20.70 2 332 4.1E-131 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_07225 7412bd942695ffcfe8048ef9bbe4fcf5 335 Pfam PF01180 Dihydroorotate dehydrogenase 44 329 7.5E-87 T 13-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 CDG55_07225 7412bd942695ffcfe8048ef9bbe4fcf5 335 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 333 50.271 T 13-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 CDG55_07225 7412bd942695ffcfe8048ef9bbe4fcf5 335 SUPERFAMILY SSF51395 1 332 6.66E-108 T 13-10-2018 CDG55_07225 7412bd942695ffcfe8048ef9bbe4fcf5 335 PIRSF PIRSF000164 13 334 4.4E-96 T 13-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 CDG55_00605 67e6952037df8f6189201adab063382c 1078 Pfam PF04851 Type III restriction enzyme, res subunit 310 487 1.2E-16 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CDG55_00605 67e6952037df8f6189201adab063382c 1078 SUPERFAMILY SSF52540 431 723 7.97E-8 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00605 67e6952037df8f6189201adab063382c 1078 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 2 205 1.1E-46 T 13-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 CDG55_00605 67e6952037df8f6189201adab063382c 1078 Gene3D G3DSA:3.90.1570.50 91 255 1.9E-33 T 13-10-2018 CDG55_00605 67e6952037df8f6189201adab063382c 1078 Gene3D G3DSA:3.40.50.300 297 505 3.4E-47 T 13-10-2018 CDG55_00605 67e6952037df8f6189201adab063382c 1078 SUPERFAMILY SSF52540 226 514 3.01E-22 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00605 67e6952037df8f6189201adab063382c 1078 Gene3D G3DSA:3.40.50.300 506 744 2.3E-45 T 13-10-2018 CDG55_00605 67e6952037df8f6189201adab063382c 1078 Pfam PF11867 Domain of unknown function (DUF3387) 741 1072 1.3E-118 T 13-10-2018 IPR021810 Protein of unknown function DUF3387 CDG55_00605 67e6952037df8f6189201adab063382c 1078 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 315 739 5.1E-124 T 13-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 CDG55_00605 67e6952037df8f6189201adab063382c 1078 SMART SM00487 307 518 3.3E-5 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_08885 56ab78016da27dbf2d75653f99184aee 310 SMART SM00342 219 302 1.1E-31 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_08885 56ab78016da27dbf2d75653f99184aee 310 Pfam PF12833 Helix-turn-helix domain 225 304 2.9E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_08885 56ab78016da27dbf2d75653f99184aee 310 SUPERFAMILY SSF46689 256 306 4.93E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_08885 56ab78016da27dbf2d75653f99184aee 310 SUPERFAMILY SSF46689 205 254 3.63E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_08885 56ab78016da27dbf2d75653f99184aee 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 286 6.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_08885 56ab78016da27dbf2d75653f99184aee 310 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 286 302 6.0E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_08885 56ab78016da27dbf2d75653f99184aee 310 Pfam PF12852 Cupin 2 187 1.3E-23 T 13-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain CDG55_08885 56ab78016da27dbf2d75653f99184aee 310 Gene3D G3DSA:1.10.10.60 198 307 8.9E-29 T 13-10-2018 CDG55_11210 5eafc3f4f7d4b9cb7ec3bc5e68e13113 395 SUPERFAMILY SSF54506 189 394 2.2E-76 T 13-10-2018 CDG55_11210 5eafc3f4f7d4b9cb7ec3bc5e68e13113 395 Gene3D G3DSA:3.10.310.10 181 374 1.3E-149 T 13-10-2018 CDG55_11210 5eafc3f4f7d4b9cb7ec3bc5e68e13113 395 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 4 395 3.7E-230 T 13-10-2018 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 CDG55_11210 5eafc3f4f7d4b9cb7ec3bc5e68e13113 395 SUPERFAMILY SSF54506 3 182 2.12E-71 T 13-10-2018 CDG55_11210 5eafc3f4f7d4b9cb7ec3bc5e68e13113 395 Gene3D G3DSA:3.10.310.10 11 388 1.3E-149 T 13-10-2018 CDG55_11210 5eafc3f4f7d4b9cb7ec3bc5e68e13113 395 Pfam PF04303 PrpF protein 6 391 9.3E-175 T 13-10-2018 IPR007400 PrpF protein CDG55_09590 1fe5ad2f7a99af59be4c8c5b01dd29fe 169 Gene3D G3DSA:2.40.100.10 3 167 2.6E-67 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_09590 1fe5ad2f7a99af59be4c8c5b01dd29fe 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 6 165 1.4E-49 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CDG55_09590 1fe5ad2f7a99af59be4c8c5b01dd29fe 169 PIRSF PIRSF001467 1 169 3.0E-28 T 13-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 CDG55_09590 1fe5ad2f7a99af59be4c8c5b01dd29fe 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 45 57 2.4E-13 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CDG55_09590 1fe5ad2f7a99af59be4c8c5b01dd29fe 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 19 34 2.4E-13 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CDG55_09590 1fe5ad2f7a99af59be4c8c5b01dd29fe 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 2.4E-13 T 13-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 CDG55_09590 1fe5ad2f7a99af59be4c8c5b01dd29fe 169 SUPERFAMILY SSF50891 6 167 5.55E-58 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_07010 182015acd6f21bb9d2c46a2a04bf4b1f 112 SUPERFAMILY SSF54292 7 108 1.62E-27 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CDG55_07010 182015acd6f21bb9d2c46a2a04bf4b1f 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 111 5.7E-51 T 13-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 CDG55_07010 182015acd6f21bb9d2c46a2a04bf4b1f 112 Gene3D G3DSA:3.10.20.30 1 112 3.9E-31 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_07010 182015acd6f21bb9d2c46a2a04bf4b1f 112 PRINTS PR00355 Adrenodoxin signature 42 52 2.1E-8 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDG55_07010 182015acd6f21bb9d2c46a2a04bf4b1f 112 PRINTS PR00355 Adrenodoxin signature 83 91 2.1E-8 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDG55_07010 182015acd6f21bb9d2c46a2a04bf4b1f 112 PRINTS PR00355 Adrenodoxin signature 60 74 2.1E-8 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDG55_07010 182015acd6f21bb9d2c46a2a04bf4b1f 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 89 2.3E-10 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 SUPERFAMILY SSF46977 423 524 2.62E-31 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 9 518 1.1E-188 T 13-10-2018 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 Gene3D G3DSA:3.90.700.10 246 356 2.1E-147 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 Gene3D G3DSA:3.50.50.60 11 402 2.1E-147 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 SUPERFAMILY SSF51905 2 445 2.09E-67 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 Pfam PF02910 Fumarate reductase flavoprotein C-term 439 521 1.0E-13 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 PIRSF PIRSF000171 3 292 1.1E-18 T 13-10-2018 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 PIRSF PIRSF000171 335 537 6.0E-15 T 13-10-2018 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 12 31 9.5E-8 T 13-10-2018 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 353 375 9.5E-8 T 13-10-2018 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 Gene3D G3DSA:1.20.58.100 423 538 2.9E-43 T 13-10-2018 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 Pfam PF00890 FAD binding domain 11 390 1.1E-90 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10110 02f082181c79d17ee36675a5c7f0efa8 543 SUPERFAMILY SSF56425 236 351 1.32E-41 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_05120 5d8716b6369ed19a5905335f3068a72a 150 SUPERFAMILY SSF51283 3 148 1.83E-52 T 13-10-2018 IPR036157 dUTPase-like superfamily CDG55_05120 5d8716b6369ed19a5905335f3068a72a 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 5 149 32.652 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 CDG55_05120 5d8716b6369ed19a5905335f3068a72a 150 Pfam PF00692 dUTPase 15 148 3.2E-39 T 13-10-2018 IPR029054 dUTPase-like CDG55_05120 5d8716b6369ed19a5905335f3068a72a 150 TIGRFAM TIGR00576 dut: dUTP diphosphatase 8 149 1.9E-48 T 13-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 CDG55_05120 5d8716b6369ed19a5905335f3068a72a 150 Gene3D G3DSA:2.70.40.10 1 149 1.9E-53 T 13-10-2018 IPR036157 dUTPase-like superfamily CDG55_02225 213154a18813e3cb9221473042865f42 205 Pfam PF00313 'Cold-shock' DNA-binding domain 8 42 2.7E-8 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_02225 213154a18813e3cb9221473042865f42 205 Pfam PF06961 Protein of unknown function (DUF1294) 125 179 1.1E-20 T 13-10-2018 IPR010718 Protein of unknown function DUF1294 CDG55_02225 213154a18813e3cb9221473042865f42 205 Gene3D G3DSA:2.40.50.140 2 77 4.5E-11 T 13-10-2018 CDG55_02225 213154a18813e3cb9221473042865f42 205 SUPERFAMILY SSF50249 8 70 9.06E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_09805 b7d7d15b4016fecec8d8f550b2d7d646 87 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 56 2.6E-29 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CDG55_09805 b7d7d15b4016fecec8d8f550b2d7d646 87 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 1.0E-20 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CDG55_09805 b7d7d15b4016fecec8d8f550b2d7d646 87 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 64 17.498 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CDG55_09805 b7d7d15b4016fecec8d8f550b2d7d646 87 Pfam PF02599 Global regulator protein family 1 52 1.1E-26 T 13-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 CDG55_09805 b7d7d15b4016fecec8d8f550b2d7d646 87 Gene3D G3DSA:3.30.70.1680 1 59 1.3E-28 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 CDG55_09805 b7d7d15b4016fecec8d8f550b2d7d646 87 SUPERFAMILY SSF117130 1 54 3.79E-20 T 13-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 CDG55_08120 08a305e158cbb9cfc0a422bc7fe18a55 198 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 143 7.5E-27 T 13-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 CDG55_08120 08a305e158cbb9cfc0a422bc7fe18a55 198 SUPERFAMILY SSF55620 1 145 6.12E-31 T 13-10-2018 CDG55_08120 08a305e158cbb9cfc0a422bc7fe18a55 198 Gene3D G3DSA:3.30.479.10 1 144 1.8E-23 T 13-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 CDG55_09475 7407ae235f524fc3f026f8640b063808 476 SUPERFAMILY SSF53383 77 474 1.9E-98 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_09475 7407ae235f524fc3f026f8640b063808 476 Gene3D G3DSA:3.90.1150.10 94 471 1.0E-142 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_09475 7407ae235f524fc3f026f8640b063808 476 Gene3D G3DSA:3.40.640.10 126 367 1.0E-142 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_09475 7407ae235f524fc3f026f8640b063808 476 Pfam PF00155 Aminotransferase class I and II 107 468 1.7E-50 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 SUPERFAMILY SSF56327 159 327 1.85E-59 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 5 154 9.7E-36 T 13-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 SUPERFAMILY SSF51735 3 157 5.44E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 Gene3D G3DSA:3.90.110.10 157 328 5.3E-62 T 13-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 Gene3D G3DSA:3.40.50.720 1 156 6.0E-58 T 13-10-2018 CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 159 321 7.4E-33 T 13-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 1 327 57.009 T 13-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 2 321 5.9E-146 T 13-10-2018 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 CDG55_12315 e7ca93b42054d1d25bbbbe1c5519ca35 328 PIRSF PIRSF000102 1 326 1.3E-63 T 13-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 CDG55_02235 2e1a86491d2e2bd8d63ce13c32270755 103 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 76 1.7E-10 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CDG55_02235 2e1a86491d2e2bd8d63ce13c32270755 103 SUPERFAMILY SSF54909 1 95 1.67E-19 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_02235 2e1a86491d2e2bd8d63ce13c32270755 103 Gene3D G3DSA:3.30.70.100 1 95 1.2E-29 T 13-10-2018 CDG55_05565 e9db357db82b6153151ea1f781c79a78 743 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 13-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 CDG55_05565 e9db357db82b6153151ea1f781c79a78 743 PIRSF PIRSF009407 1 743 0.0 T 13-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 CDG55_05565 e9db357db82b6153151ea1f781c79a78 743 SUPERFAMILY SSF53659 5 741 0.0 T 13-10-2018 CDG55_05565 e9db357db82b6153151ea1f781c79a78 743 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 742 0.0 T 13-10-2018 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 CDG55_05565 e9db357db82b6153151ea1f781c79a78 743 Gene3D G3DSA:3.40.718.10 405 665 5.4E-8 T 13-10-2018 CDG55_03375 b8bf891ed00b51e941f27edf80a6fb8a 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 96 114 8.1E-37 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDG55_03375 b8bf891ed00b51e941f27edf80a6fb8a 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 114 140 8.1E-37 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDG55_03375 b8bf891ed00b51e941f27edf80a6fb8a 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 19 46 8.1E-37 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDG55_03375 b8bf891ed00b51e941f27edf80a6fb8a 255 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 165 193 8.1E-37 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDG55_03375 b8bf891ed00b51e941f27edf80a6fb8a 255 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 13 249 15.133 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDG55_03375 b8bf891ed00b51e941f27edf80a6fb8a 255 Pfam PF00902 Sec-independent protein translocase protein (TatC) 22 232 6.9E-59 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDG55_03375 b8bf891ed00b51e941f27edf80a6fb8a 255 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 21 237 2.0E-62 T 13-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 CDG55_11700 3fde45c44682c98aac458041f6b46fd6 301 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 69 221 2.6E-48 T 13-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 CDG55_11700 3fde45c44682c98aac458041f6b46fd6 301 Gene3D G3DSA:2.60.120.330 45 224 3.0E-46 T 13-10-2018 IPR027443 Isopenicillin N synthase-like CDG55_11700 3fde45c44682c98aac458041f6b46fd6 301 SUPERFAMILY SSF51197 97 222 7.14E-17 T 13-10-2018 CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 Pfam PF01967 MoaC family 1 136 9.1E-41 T 13-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 Gene3D G3DSA:3.30.70.640 1 147 4.8E-48 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 PIRSF PIRSF036594 1 304 6.5E-66 T 13-10-2018 IPR012247 Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823 CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 Pfam PF00994 Probable molybdopterin binding domain 151 291 6.2E-30 T 13-10-2018 IPR001453 MoaB/Mog domain CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 SUPERFAMILY SSF55040 1 140 3.79E-44 T 13-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 SMART SM00852 151 293 1.2E-20 T 13-10-2018 IPR001453 MoaB/Mog domain CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 SUPERFAMILY SSF53218 147 298 1.19E-36 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 Gene3D G3DSA:3.40.980.10 148 302 7.8E-45 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CDG55_09045 664b863bcc4136ad1d8b8800846e23ce 307 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 149 287 8.8E-28 T 13-10-2018 IPR001453 MoaB/Mog domain CDG55_02470 2a6167afbe91c422e0f824ee022b905f 248 PIRSF PIRSF016482 20 235 1.4E-60 T 13-10-2018 IPR007445 Pilus assembly protein, PilO CDG55_02470 2a6167afbe91c422e0f824ee022b905f 248 Gene3D G3DSA:3.30.70.60 118 229 3.1E-34 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CDG55_02470 2a6167afbe91c422e0f824ee022b905f 248 Pfam PF04350 Pilus assembly protein, PilO 73 220 3.4E-50 T 13-10-2018 IPR007445 Pilus assembly protein, PilO CDG55_02765 4e429ac6f1546c86493dbc7d1a1b77f8 152 Gene3D G3DSA:1.20.120.520 2 149 1.2E-5 T 13-10-2018 CDG55_02765 4e429ac6f1546c86493dbc7d1a1b77f8 152 Pfam PF01814 Hemerythrin HHE cation binding domain 3 119 2.2E-12 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CDG55_02660 df0acb6d54de1b8b01af9ee1e77b25f7 64 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 50 6.0E-14 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CDG55_02660 df0acb6d54de1b8b01af9ee1e77b25f7 64 Gene3D G3DSA:1.10.10.1100 1 57 4.2E-23 T 13-10-2018 CDG55_06825 eb679ee3a772130ba106dc105b703d18 259 Pfam PF06966 Protein of unknown function (DUF1295) 17 249 1.3E-58 T 13-10-2018 IPR010721 Protein of unknown function DUF1295 CDG55_06825 eb679ee3a772130ba106dc105b703d18 259 Gene3D G3DSA:1.20.120.1630 53 255 1.3E-14 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 Gene3D G3DSA:3.40.50.300 46 228 1.2E-28 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 Gene3D G3DSA:3.40.50.300 279 488 3.2E-53 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 Gene3D G3DSA:3.30.230.10 582 820 3.4E-90 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 686 705 1.1E-10 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 746 764 1.1E-10 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 100 119 1.1E-10 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 716 735 1.1E-10 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 Pfam PF13654 AAA domain 64 579 7.3E-170 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 SUPERFAMILY SSF52540 68 590 2.13E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 SUPERFAMILY SSF54211 603 795 2.47E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 Gene3D G3DSA:1.10.8.60 489 576 5.7E-14 T 13-10-2018 CDG55_06555 ebe920161c3e673695b82ce068d3b9d7 875 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 689 795 1.2E-10 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CDG55_08140 ff0fd6b9d0bd6730810f356027d9a191 146 Gene3D G3DSA:3.30.530.20 3 145 4.4E-15 T 13-10-2018 IPR023393 START-like domain superfamily CDG55_08140 ff0fd6b9d0bd6730810f356027d9a191 146 SUPERFAMILY SSF55961 5 144 2.95E-16 T 13-10-2018 CDG55_08140 ff0fd6b9d0bd6730810f356027d9a191 146 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 5 144 2.0E-10 T 13-10-2018 IPR019587 Polyketide cyclase/dehydrase CDG55_13120 8ddd7eb497f832e5ad0097b3e9ca9824 233 Pfam PF03811 InsA N-terminal domain 4 36 4.4E-6 T 13-10-2018 IPR003220 InsA N-terminal domain GO:0006313 CDG55_13120 8ddd7eb497f832e5ad0097b3e9ca9824 233 Pfam PF03400 IS1 transposase 104 220 2.7E-25 T 13-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 CDG55_13535 8ddd7eb497f832e5ad0097b3e9ca9824 233 Pfam PF03811 InsA N-terminal domain 4 36 4.4E-6 T 13-10-2018 IPR003220 InsA N-terminal domain GO:0006313 CDG55_13535 8ddd7eb497f832e5ad0097b3e9ca9824 233 Pfam PF03400 IS1 transposase 104 220 2.7E-25 T 13-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 CDG55_13465 8ddd7eb497f832e5ad0097b3e9ca9824 233 Pfam PF03811 InsA N-terminal domain 4 36 4.4E-6 T 13-10-2018 IPR003220 InsA N-terminal domain GO:0006313 CDG55_13465 8ddd7eb497f832e5ad0097b3e9ca9824 233 Pfam PF03400 IS1 transposase 104 220 2.7E-25 T 13-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 CDG55_12370 4bfabc860acece06e04d2728654d02d3 260 SUPERFAMILY SSF103032 8 260 5.23E-71 T 13-10-2018 IPR035948 YwqG-like superfamily CDG55_12370 4bfabc860acece06e04d2728654d02d3 260 Gene3D G3DSA:2.30.320.10 3 260 1.5E-87 T 13-10-2018 IPR035948 YwqG-like superfamily CDG55_12370 4bfabc860acece06e04d2728654d02d3 260 Pfam PF09234 Domain of unknown function (DUF1963) 42 259 2.8E-62 T 13-10-2018 IPR015315 Protein of unknown function DUF1963 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 Pfam PF11890 Domain of unknown function (DUF3410) 297 349 1.6E-13 T 13-10-2018 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00750+1.1.1.290 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 Gene3D G3DSA:3.40.50.720 92 254 3.2E-103 T 13-10-2018 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 SUPERFAMILY SSF52283 17 109 2.13E-17 T 13-10-2018 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 117 253 1.8E-32 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 23 273 1.4E-17 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 Gene3D G3DSA:3.40.50.720 2 272 3.2E-103 T 13-10-2018 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 355 39.869 T 13-10-2018 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00750+1.1.1.290 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 Gene3D G3DSA:3.30.1370.170 287 350 1.0E-11 T 13-10-2018 IPR038251 PdxB, dimerisation domain superfamily KEGG: 00750+1.1.1.290 CDG55_05445 f7472c80747987b8d0eaf534dfc6556a 355 SUPERFAMILY SSF51735 91 254 2.3E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_05115 8e519799f7af266b7714c6d09db53694 679 Pfam PF13361 UvrD-like helicase C-terminal domain 278 622 1.4E-70 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDG55_05115 8e519799f7af266b7714c6d09db53694 679 Pfam PF00580 UvrD/REP helicase N-terminal domain 7 272 1.7E-70 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CDG55_05115 8e519799f7af266b7714c6d09db53694 679 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 6 678 4.2E-288 T 13-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 CDG55_05115 8e519799f7af266b7714c6d09db53694 679 Gene3D G3DSA:3.40.50.300 281 641 2.9E-120 T 13-10-2018 CDG55_05115 8e519799f7af266b7714c6d09db53694 679 SUPERFAMILY SSF52540 5 648 2.81E-156 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05115 8e519799f7af266b7714c6d09db53694 679 Gene3D G3DSA:1.10.486.10 384 553 2.9E-120 T 13-10-2018 CDG55_05115 8e519799f7af266b7714c6d09db53694 679 Gene3D G3DSA:1.10.10.160 112 188 3.3E-90 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily CDG55_05115 8e519799f7af266b7714c6d09db53694 679 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 5 678 39.229 T 13-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 CDG55_05115 8e519799f7af266b7714c6d09db53694 679 Gene3D G3DSA:3.40.50.300 8 272 3.3E-90 T 13-10-2018 CDG55_10335 f7b467504457606528575f43fffa3b54 356 Pfam PF00586 AIR synthase related protein, N-terminal domain 64 169 2.6E-15 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CDG55_10335 f7b467504457606528575f43fffa3b54 356 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 12 354 46.273 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_10335 f7b467504457606528575f43fffa3b54 356 Pfam PF02769 AIR synthase related protein, C-terminal domain 181 342 3.5E-36 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CDG55_10335 f7b467504457606528575f43fffa3b54 356 Gene3D G3DSA:3.90.650.10 176 346 5.0E-68 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CDG55_10335 f7b467504457606528575f43fffa3b54 356 Gene3D G3DSA:3.30.1330.10 11 175 9.6E-67 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CDG55_10335 f7b467504457606528575f43fffa3b54 356 SUPERFAMILY SSF56042 176 342 4.19E-61 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CDG55_10335 f7b467504457606528575f43fffa3b54 356 SUPERFAMILY SSF55326 12 175 7.78E-52 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CDG55_10335 f7b467504457606528575f43fffa3b54 356 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 12 339 3.0E-145 T 13-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_03040 86778a1a6d2e152ba7c88021d06e5757 272 SUPERFAMILY SSF51735 12 227 6.47E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_03040 86778a1a6d2e152ba7c88021d06e5757 272 Pfam PF13460 NAD(P)H-binding 9 190 2.3E-6 T 13-10-2018 IPR016040 NAD(P)-binding domain CDG55_03040 86778a1a6d2e152ba7c88021d06e5757 272 Gene3D G3DSA:3.40.50.720 1 272 1.4E-49 T 13-10-2018 CDG55_06745 d467ef1f1474de1a09160cb44e7e91a9 219 Pfam PF14487 Domain of unknown function (DUF4433) 18 218 3.5E-55 T 13-10-2018 IPR029494 Domain of unknown function DUF4433 CDG55_10145 a0d9ee1151f43b9b6cf65ca3adef1332 294 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 22 283 3.8E-100 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 CDG55_10145 a0d9ee1151f43b9b6cf65ca3adef1332 294 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 26 285 8.4E-128 T 13-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 CDG55_10145 a0d9ee1151f43b9b6cf65ca3adef1332 294 Gene3D G3DSA:1.10.3720.10 27 287 5.3E-63 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_10145 a0d9ee1151f43b9b6cf65ca3adef1332 294 SUPERFAMILY SSF161098 25 280 4.11E-56 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_10145 a0d9ee1151f43b9b6cf65ca3adef1332 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 281 8.7E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 SMART SM00052 432 677 3.8E-109 T 13-10-2018 IPR001633 EAL domain CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 Pfam PF00563 EAL domain 438 672 3.6E-69 T 13-10-2018 IPR001633 EAL domain CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 257 419 5.8E-40 T 13-10-2018 IPR000160 GGDEF domain CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 Gene3D G3DSA:3.30.70.270 255 434 5.5E-53 T 13-10-2018 CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 SMART SM00267 250 421 7.8E-57 T 13-10-2018 IPR000160 GGDEF domain CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 Gene3D G3DSA:3.20.20.450 435 683 6.0E-93 T 13-10-2018 IPR035919 EAL domain superfamily CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 SUPERFAMILY SSF55073 266 422 1.02E-45 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 SUPERFAMILY SSF141868 438 679 1.2E-84 T 13-10-2018 IPR035919 EAL domain superfamily CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 Pfam PF00990 Diguanylate cyclase, GGDEF domain 262 417 1.4E-43 T 13-10-2018 IPR000160 GGDEF domain CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 Pfam PF03707 Bacterial signalling protein N terminal repeat 185 236 3.2E-5 T 13-10-2018 IPR005330 MHYT domain CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 Pfam PF03707 Bacterial signalling protein N terminal repeat 53 110 2.6E-16 T 13-10-2018 IPR005330 MHYT domain CDG55_12675 fdbe710d957cf5088421d7849944a8ed 687 Pfam PF03707 Bacterial signalling protein N terminal repeat 116 168 5.2E-15 T 13-10-2018 IPR005330 MHYT domain CDG55_13135 206c04f9dae4db9db596a5570c320cf4 243 Pfam PF09836 Putative DNA-binding domain 10 95 1.0E-18 T 13-10-2018 IPR018640 Putative DNA-binding domain, bacteria CDG55_13135 206c04f9dae4db9db596a5570c320cf4 243 Gene3D G3DSA:1.10.10.2180 125 236 1.1E-7 T 13-10-2018 CDG55_13135 206c04f9dae4db9db596a5570c320cf4 243 Gene3D G3DSA:1.10.150.690 35 124 8.8E-23 T 13-10-2018 CDG55_02770 efcecf7df3c52064ce0e44829e040a99 288 Pfam PF00892 EamA-like transporter family 147 279 3.0E-15 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_02770 efcecf7df3c52064ce0e44829e040a99 288 SUPERFAMILY SSF103481 184 282 1.15E-12 T 13-10-2018 CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 Gene3D G3DSA:2.70.210.12 1 158 9.5E-58 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 Pfam PF01926 50S ribosome-binding GTPase 161 284 3.5E-22 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 Hamap MF_01454 GTPase Obg [obg]. 2 333 46.929 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 SUPERFAMILY SSF52540 151 337 4.81E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 PIRSF PIRSF002401 1 380 1.8E-133 T 13-10-2018 IPR035101 GTP-binding protein, Obg-type CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 Pfam PF01018 GTP1/OBG 4 158 1.1E-56 T 13-10-2018 IPR006169 GTP1/OBG domain CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 SUPERFAMILY SSF82051 3 158 2.75E-55 T 13-10-2018 IPR036726 GTP1/OBG domain superfamily CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.9E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.9E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.9E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.9E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 Gene3D G3DSA:3.40.50.300 159 340 1.8E-48 T 13-10-2018 CDG55_06170 8519fcf986876f4adbd3558ca9f584c5 406 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 4.9E-140 T 13-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 CDG55_01085 8d8d528771a171f800a7265ba8cf1455 553 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 60 405 2.9E-111 T 13-10-2018 IPR030931 Group II intron reverse transcriptase/maturase CDG55_01085 8d8d528771a171f800a7265ba8cf1455 553 SUPERFAMILY SSF56672 79 411 2.67E-52 T 13-10-2018 CDG55_01085 8d8d528771a171f800a7265ba8cf1455 553 Pfam PF08388 Group II intron, maturase-specific domain 341 418 7.1E-26 T 13-10-2018 IPR013597 Group II intron, maturase-specific CDG55_01085 8d8d528771a171f800a7265ba8cf1455 553 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 111 323 4.4E-43 T 13-10-2018 IPR000477 Reverse transcriptase domain CDG55_01085 8d8d528771a171f800a7265ba8cf1455 553 Pfam PF13655 N-terminal domain of reverse transcriptase 15 96 4.3E-30 T 13-10-2018 IPR025960 Reverse transcriptase, N-terminal domain CDG55_06820 0d080b2fd72110006dd83f4d84c0752b 399 SUPERFAMILY SSF53335 17 350 1.45E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_06820 0d080b2fd72110006dd83f4d84c0752b 399 Gene3D G3DSA:3.40.50.150 129 398 5.4E-100 T 13-10-2018 CDG55_06820 0d080b2fd72110006dd83f4d84c0752b 399 PIRSF PIRSF003085 9 398 4.2E-120 T 13-10-2018 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 CDG55_06820 0d080b2fd72110006dd83f4d84c0752b 399 Pfam PF02353 Mycolic acid cyclopropane synthetase 125 388 3.5E-83 T 13-10-2018 CDG55_02435 536e163a611396b51175b02420a94514 499 SUPERFAMILY SSF53244 334 485 3.27E-47 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_02435 536e163a611396b51175b02420a94514 499 Gene3D G3DSA:3.90.190.20 338 496 2.0E-55 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_02435 536e163a611396b51175b02420a94514 499 SUPERFAMILY SSF63418 13 75 2.35E-8 T 13-10-2018 IPR035911 MurE/MurF, N-terminal CDG55_02435 536e163a611396b51175b02420a94514 499 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 24 485 9.0E-140 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CDG55_02435 536e163a611396b51175b02420a94514 499 Pfam PF02875 Mur ligase family, glutamate ligase domain 334 416 2.7E-19 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CDG55_02435 536e163a611396b51175b02420a94514 499 Gene3D G3DSA:3.40.1190.10 99 337 3.4E-73 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_02435 536e163a611396b51175b02420a94514 499 Gene3D G3DSA:3.40.1390.10 6 86 7.7E-8 T 13-10-2018 CDG55_02435 536e163a611396b51175b02420a94514 499 Pfam PF08245 Mur ligase middle domain 108 313 6.7E-53 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CDG55_02435 536e163a611396b51175b02420a94514 499 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 485 30.909 T 13-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 CDG55_02435 536e163a611396b51175b02420a94514 499 SUPERFAMILY SSF53623 101 332 4.19E-70 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Gene3D G3DSA:3.30.2090.10 181 270 3.4E-250 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Gene3D G3DSA:3.30.70.1430 42 825 3.4E-250 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Gene3D G3DSA:3.30.2090.10 729 817 3.4E-250 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Gene3D G3DSA:3.30.70.1430 579 677 3.4E-250 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 SUPERFAMILY SSF82866 815 1036 1.57E-46 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 SUPERFAMILY SSF82693 42 138 2.96E-20 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Gene3D G3DSA:1.20.1640.10 525 1029 3.4E-250 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 SUPERFAMILY SSF82714 187 266 1.07E-11 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Gene3D G3DSA:1.20.1640.10 15 506 3.4E-250 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Pfam PF00873 AcrB/AcrD/AcrF family 7 1030 6.9E-166 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 SUPERFAMILY SSF82714 732 815 2.88E-14 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Gene3D G3DSA:3.30.70.1320 138 328 3.4E-250 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 Gene3D G3DSA:3.30.70.1440 678 877 3.4E-250 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 SUPERFAMILY SSF82866 297 487 2.62E-37 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 SUPERFAMILY SSF82693 139 325 1.15E-15 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 SUPERFAMILY SSF82693 579 671 3.49E-5 T 13-10-2018 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 PRINTS PR00702 Acriflavin resistance protein family signature 332 355 8.5E-22 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 8.5E-22 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 8.5E-22 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 8.5E-22 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_01350 9546f76865a1ab059f8ffffa76f650dc 1042 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 8.5E-22 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_06070 3ccea5041aa1195870db2baf31e60aa1 163 Pfam PF04345 Chorismate lyase 14 153 1.3E-16 T 13-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 CDG55_06070 3ccea5041aa1195870db2baf31e60aa1 163 SUPERFAMILY SSF64288 12 157 1.02E-34 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CDG55_06070 3ccea5041aa1195870db2baf31e60aa1 163 Gene3D G3DSA:3.40.1410.10 4 158 2.0E-33 T 13-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CDG55_08455 bff4b5621042bf691cd01dae45328b4d 186 Pfam PF03551 Transcriptional regulator PadR-like family 7 79 2.6E-9 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal CDG55_08455 bff4b5621042bf691cd01dae45328b4d 186 Gene3D G3DSA:1.10.10.10 1 88 6.4E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_08455 bff4b5621042bf691cd01dae45328b4d 186 SUPERFAMILY SSF46785 3 176 1.06E-34 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_08455 bff4b5621042bf691cd01dae45328b4d 186 Pfam PF10400 Virulence activator alpha C-term 91 174 1.0E-17 T 13-10-2018 IPR018309 Transcription regulator PadR, C-terminal CDG55_13360 e750974a897539892d86a47d98da018c 494 SMART SM00316 138 203 3.6E-6 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_13360 e750974a897539892d86a47d98da018c 494 Pfam PF14520 Helix-hairpin-helix domain 435 490 6.8E-9 T 13-10-2018 CDG55_13360 e750974a897539892d86a47d98da018c 494 Gene3D G3DSA:3.30.300.20 204 282 3.6E-31 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_13360 e750974a897539892d86a47d98da018c 494 SUPERFAMILY SSF54814 206 283 1.24E-28 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CDG55_13360 e750974a897539892d86a47d98da018c 494 Gene3D G3DSA:1.10.150.20 434 492 5.4E-20 T 13-10-2018 CDG55_13360 e750974a897539892d86a47d98da018c 494 Pfam PF13184 NusA-like KH domain 235 301 1.2E-27 T 13-10-2018 IPR025249 KH domain, NusA-like GO:0003723 CDG55_13360 e750974a897539892d86a47d98da018c 494 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 347 1.2E-107 T 13-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 CDG55_13360 e750974a897539892d86a47d98da018c 494 Gene3D G3DSA:1.10.150.20 358 426 1.2E-15 T 13-10-2018 CDG55_13360 e750974a897539892d86a47d98da018c 494 SUPERFAMILY SSF54814 284 345 1.77E-10 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CDG55_13360 e750974a897539892d86a47d98da018c 494 Gene3D G3DSA:3.30.300.20 283 352 3.0E-20 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_13360 e750974a897539892d86a47d98da018c 494 Pfam PF08529 NusA N-terminal domain 4 128 1.2E-33 T 13-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 CDG55_13360 e750974a897539892d86a47d98da018c 494 SUPERFAMILY SSF50249 137 204 3.19E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_13360 e750974a897539892d86a47d98da018c 494 SUPERFAMILY SSF47794 431 493 5.65E-14 T 13-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 CDG55_13360 e750974a897539892d86a47d98da018c 494 SUPERFAMILY SSF69705 1 130 3.4E-32 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 CDG55_13360 e750974a897539892d86a47d98da018c 494 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 415 27.472 T 13-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 CDG55_13360 e750974a897539892d86a47d98da018c 494 Gene3D G3DSA:2.40.50.140 140 203 5.2E-14 T 13-10-2018 CDG55_13360 e750974a897539892d86a47d98da018c 494 Gene3D G3DSA:3.30.1480.10 1 133 4.4E-34 T 13-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 CDG55_13360 e750974a897539892d86a47d98da018c 494 SUPERFAMILY SSF47794 360 421 3.61E-9 T 13-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 Pfam PF00694 Aconitase C-terminal domain 657 788 2.0E-30 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 3 864 0.0 T 13-10-2018 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 SUPERFAMILY SSF52016 599 862 1.67E-68 T 13-10-2018 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 SUPERFAMILY SSF53732 13 591 1.96E-185 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 Gene3D G3DSA:3.30.499.20 4 360 1.9E-129 T 13-10-2018 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 Pfam PF00330 Aconitase family (aconitate hydratase) 70 534 4.7E-144 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 Gene3D G3DSA:3.20.19.10 619 863 1.4E-84 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 Gene3D G3DSA:3.30.499.10 361 562 2.0E-76 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 Gene3D G3DSA:1.10.1440.20 563 618 1.8E-8 T 13-10-2018 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 162 170 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 205 220 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 403 414 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 267 280 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 191 204 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 360 374 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 281 294 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 465 478 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_14680 5f421aef02f20dba271104c47bf4dc45 868 PRINTS PR00415 Aconitase family signature 138 151 1.3E-26 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_08370 9e98a93ce87fc4ad03bbb0d3ca3eef4f 210 Pfam PF00691 OmpA family 80 156 1.8E-6 T 13-10-2018 IPR006665 OmpA-like domain CDG55_08370 9e98a93ce87fc4ad03bbb0d3ca3eef4f 210 SUPERFAMILY SSF103088 71 194 5.62E-12 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_08370 9e98a93ce87fc4ad03bbb0d3ca3eef4f 210 Gene3D G3DSA:3.30.1330.60 56 196 4.3E-13 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_02725 a22f9151170d97f1bb43ce98c3e2ca79 85 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 1.6E-29 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02725 a22f9151170d97f1bb43ce98c3e2ca79 85 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.527 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02725 a22f9151170d97f1bb43ce98c3e2ca79 85 SUPERFAMILY SSF54565 1 78 1.2E-28 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02725 a22f9151170d97f1bb43ce98c3e2ca79 85 Pfam PF00886 Ribosomal protein S16 8 68 3.7E-25 T 13-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02725 a22f9151170d97f1bb43ce98c3e2ca79 85 Gene3D G3DSA:3.30.1320.10 1 84 1.5E-31 T 13-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09510 c270a05b0c77208ceb45b7430e959f79 1343 Gene3D G3DSA:2.60.40.10 972 1101 3.2E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold CDG55_09510 c270a05b0c77208ceb45b7430e959f79 1343 SUPERFAMILY SSF117074 985 1060 5.36E-7 T 13-10-2018 CDG55_09510 c270a05b0c77208ceb45b7430e959f79 1343 Pfam PF01345 Domain of unknown function DUF11 1258 1340 4.9E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09510 c270a05b0c77208ceb45b7430e959f79 1343 Pfam PF17210 SdrD B-like domain 994 1067 2.9E-7 T 13-10-2018 IPR033764 SD-repeat containing protein, B domain CDG55_09510 c270a05b0c77208ceb45b7430e959f79 1343 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1265 1301 2.7E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_13180 a2b0f3c9a6b0302c8f5c4ed23ee67e19 189 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 55 186 6.1E-45 T 13-10-2018 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 CDG55_13180 a2b0f3c9a6b0302c8f5c4ed23ee67e19 189 PRINTS PR00813 Bacterial general secretion pathway protein G signature 56 81 2.0E-16 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 CDG55_13180 a2b0f3c9a6b0302c8f5c4ed23ee67e19 189 PRINTS PR00813 Bacterial general secretion pathway protein G signature 92 110 2.0E-16 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 CDG55_13180 a2b0f3c9a6b0302c8f5c4ed23ee67e19 189 SUPERFAMILY SSF54523 83 187 1.31E-25 T 13-10-2018 CDG55_13180 a2b0f3c9a6b0302c8f5c4ed23ee67e19 189 Pfam PF07963 Prokaryotic N-terminal methylation motif 51 76 4.4E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_13180 a2b0f3c9a6b0302c8f5c4ed23ee67e19 189 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 55 76 9.5E-8 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_13180 a2b0f3c9a6b0302c8f5c4ed23ee67e19 189 Gene3D G3DSA:3.30.700.10 79 187 3.9E-30 T 13-10-2018 CDG55_13180 a2b0f3c9a6b0302c8f5c4ed23ee67e19 189 Pfam PF08334 Type II secretion system (T2SS), protein G 79 186 2.7E-34 T 13-10-2018 IPR013545 Type II secretion system protein G CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 Gene3D G3DSA:3.10.580.10 38 190 7.5E-51 T 13-10-2018 CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 SMART SM00116 67 117 0.052 T 13-10-2018 IPR000644 CBS domain CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 SMART SM00116 131 179 10.0 T 13-10-2018 IPR000644 CBS domain CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 Gene3D G3DSA:3.30.465.10 201 278 1.6E-19 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 SMART SM01091 201 279 1.6E-13 T 13-10-2018 IPR005170 Transporter-associated domain CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 SUPERFAMILY SSF54631 55 191 1.22E-31 T 13-10-2018 CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 Pfam PF00571 CBS domain 59 116 2.9E-7 T 13-10-2018 IPR000644 CBS domain CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 Pfam PF00571 CBS domain 126 179 2.5E-6 T 13-10-2018 IPR000644 CBS domain CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 Pfam PF03471 Transporter associated domain 206 278 1.1E-15 T 13-10-2018 IPR005170 Transporter-associated domain CDG55_13165 47c020ede9b3cc9b4566e1ea70fbbf78 279 SUPERFAMILY SSF56176 204 278 1.12E-14 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CDG55_10695 7b06ac90446092c4545500c7b7a134a2 257 SUPERFAMILY SSF55811 73 239 1.26E-42 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_10695 7b06ac90446092c4545500c7b7a134a2 257 Gene3D G3DSA:3.90.79.20 3 119 2.4E-22 T 13-10-2018 CDG55_10695 7b06ac90446092c4545500c7b7a134a2 257 SUPERFAMILY SSF55811 23 90 2.07E-6 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_10695 7b06ac90446092c4545500c7b7a134a2 257 Gene3D G3DSA:3.90.79.10 120 250 1.3E-38 T 13-10-2018 CDG55_10695 7b06ac90446092c4545500c7b7a134a2 257 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 87 118 2.6E-12 T 13-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 CDG55_10695 7b06ac90446092c4545500c7b7a134a2 257 Pfam PF00293 NUDIX domain 123 229 2.1E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_04220 d7196cb581ae0f4bf1ebe7d803c9e446 406 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 406 147.136 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDG55_04220 d7196cb581ae0f4bf1ebe7d803c9e446 406 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 31 404 0.0 T 13-10-2018 CDG55_04220 d7196cb581ae0f4bf1ebe7d803c9e446 406 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 13 406 1.8E-120 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDG55_04220 d7196cb581ae0f4bf1ebe7d803c9e446 406 SUPERFAMILY SSF56266 14 403 2.88E-137 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDG55_04220 d7196cb581ae0f4bf1ebe7d803c9e446 406 Gene3D G3DSA:3.60.70.12 8 276 7.0E-89 T 13-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDG55_04220 d7196cb581ae0f4bf1ebe7d803c9e446 406 Gene3D G3DSA:3.10.20.340 277 406 7.8E-43 T 13-10-2018 CDG55_04220 d7196cb581ae0f4bf1ebe7d803c9e446 406 Pfam PF01960 ArgJ family 20 406 5.0E-141 T 13-10-2018 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 CDG55_05630 416e1575abe588813debf196e2f8bca7 203 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 4 187 3.1E-45 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_05630 416e1575abe588813debf196e2f8bca7 203 SUPERFAMILY SSF51391 3 187 5.49E-48 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_05630 416e1575abe588813debf196e2f8bca7 203 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 2 203 21.092 T 13-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_05630 416e1575abe588813debf196e2f8bca7 203 Gene3D G3DSA:3.20.20.70 3 201 2.3E-45 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_05630 416e1575abe588813debf196e2f8bca7 203 Pfam PF02581 Thiamine monophosphate synthase 4 183 4.7E-50 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_12240 469701f0547f97caf9d761e8a95eb871 390 Gene3D G3DSA:1.10.540.10 9 127 2.4E-30 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_12240 469701f0547f97caf9d761e8a95eb871 390 Gene3D G3DSA:1.20.140.10 242 390 1.7E-44 T 13-10-2018 CDG55_12240 469701f0547f97caf9d761e8a95eb871 390 SUPERFAMILY SSF47203 234 388 1.34E-46 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_12240 469701f0547f97caf9d761e8a95eb871 390 SUPERFAMILY SSF56645 8 247 1.57E-74 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_12240 469701f0547f97caf9d761e8a95eb871 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 224 2.6E-24 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_12240 469701f0547f97caf9d761e8a95eb871 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 236 388 1.3E-46 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_12240 469701f0547f97caf9d761e8a95eb871 390 Gene3D G3DSA:2.40.110.10 128 241 1.3E-41 T 13-10-2018 CDG55_12240 469701f0547f97caf9d761e8a95eb871 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 12 125 2.3E-24 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 Pfam PF09397 Ftsk gamma domain 968 1027 3.0E-26 T 13-10-2018 IPR018541 FtsK gamma domain CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 Gene3D G3DSA:1.10.10.10 960 1026 1.1E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 SUPERFAMILY SSF46785 965 1027 3.05E-20 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 SMART SM00843 965 1027 1.3E-31 T 13-10-2018 IPR018541 FtsK gamma domain CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 Pfam PF01580 FtsK/SpoIIIE family 647 861 5.9E-65 T 13-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 SUPERFAMILY SSF52540 621 934 4.56E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 Gene3D G3DSA:3.40.50.300 644 947 8.3E-112 T 13-10-2018 CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 14 173 8.5E-28 T 13-10-2018 IPR025199 DNA translocase FtsK, 4TM region CDG55_05070 8b1dac930d959ad7418a38ed5547a3f3 1027 Gene3D G3DSA:3.30.980.40 538 643 3.5E-31 T 13-10-2018 CDG55_10765 b4de4e280e8141c3731d896a8a036959 534 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 49 308 3.6E-24 T 13-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 CDG55_10765 b4de4e280e8141c3731d896a8a036959 534 SUPERFAMILY SSF53474 46 353 1.29E-32 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_10400 ef97244324ad2b44059698f263e44ecf 359 Gene3D G3DSA:3.90.1150.10 250 359 4.7E-46 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_10400 ef97244324ad2b44059698f263e44ecf 359 PIRSF PIRSF000525 1 359 2.5E-151 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 CDG55_10400 ef97244324ad2b44059698f263e44ecf 359 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 1 358 50.693 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 CDG55_10400 ef97244324ad2b44059698f263e44ecf 359 SUPERFAMILY SSF53383 2 357 8.56E-117 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_10400 ef97244324ad2b44059698f263e44ecf 359 Gene3D G3DSA:3.40.640.10 16 249 3.4E-94 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_10400 ef97244324ad2b44059698f263e44ecf 359 Pfam PF00266 Aminotransferase class-V 4 347 2.5E-55 T 13-10-2018 IPR000192 Aminotransferase class V domain CDG55_10400 ef97244324ad2b44059698f263e44ecf 359 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 358 3.6E-159 T 13-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 CDG55_02920 0e16fecd82fcdf3ad63ce3f56f0645ec 264 Pfam PF13566 Domain of unknown function (DUF4130 90 261 2.2E-50 T 13-10-2018 IPR025404 Domain of unknown function DUF4130 CDG55_02920 0e16fecd82fcdf3ad63ce3f56f0645ec 264 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 9 262 1.4E-80 T 13-10-2018 IPR023875 DNA metabolism protein, putative CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 135 154 3.2E-60 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 51 69 3.2E-60 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 71 94 3.2E-60 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 303 329 3.2E-60 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 190 210 3.2E-60 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 SUPERFAMILY SSF53067 10 151 4.0E-36 T 13-10-2018 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 10 337 3.6E-147 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 Gene3D G3DSA:3.30.420.40 157 320 6.2E-127 T 13-10-2018 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 Gene3D G3DSA:3.30.420.40 14 330 6.2E-127 T 13-10-2018 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 SUPERFAMILY SSF53067 153 337 4.54E-48 T 13-10-2018 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 Pfam PF06723 MreB/Mbl protein 13 337 1.8E-141 T 13-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 CDG55_11320 5879602aeaa4dd70cb8b7ef6272c1c76 346 Gene3D G3DSA:3.90.640.10 189 262 6.2E-127 T 13-10-2018 CDG55_14465 f5fd4ef0c3936402fb372de87a13e4fd 248 SUPERFAMILY SSF52540 72 239 6.07E-14 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14465 f5fd4ef0c3936402fb372de87a13e4fd 248 Gene3D G3DSA:3.40.50.300 54 233 6.5E-37 T 13-10-2018 CDG55_14465 f5fd4ef0c3936402fb372de87a13e4fd 248 Pfam PF01695 IstB-like ATP binding protein 103 219 4.7E-15 T 13-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 Gene3D G3DSA:3.40.47.10 138 384 1.3E-141 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 6 390 61.35 T 13-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 PIRSF PIRSF000429 3 390 1.3E-122 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 SUPERFAMILY SSF53901 5 261 7.41E-73 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 SUPERFAMILY SSF53901 266 389 2.88E-43 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 Pfam PF02803 Thiolase, C-terminal domain 265 389 4.6E-47 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 Pfam PF00108 Thiolase, N-terminal domain 9 257 1.3E-73 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 8 390 1.6E-190 T 13-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 Gene3D G3DSA:3.40.47.10 9 271 1.3E-141 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_13580 27a1f7c4cd233a2a4e9c2a677d4c7c72 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 11 388 1.1E-128 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_04960 124b872955d2acb30208fb1459833f00 163 Gene3D G3DSA:3.40.50.620 1 163 2.3E-58 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_04960 124b872955d2acb30208fb1459833f00 163 SUPERFAMILY SSF52374 3 158 2.33E-44 T 13-10-2018 CDG55_04960 124b872955d2acb30208fb1459833f00 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 22 43 7.8E-49 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CDG55_04960 124b872955d2acb30208fb1459833f00 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 51 75 7.8E-49 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CDG55_04960 124b872955d2acb30208fb1459833f00 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 4 22 7.8E-49 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CDG55_04960 124b872955d2acb30208fb1459833f00 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 114 136 7.8E-49 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CDG55_04960 124b872955d2acb30208fb1459833f00 163 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 87 103 7.8E-49 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CDG55_04960 124b872955d2acb30208fb1459833f00 163 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 4 160 35.526 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CDG55_04960 124b872955d2acb30208fb1459833f00 163 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 6 158 9.6E-59 T 13-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 CDG55_04960 124b872955d2acb30208fb1459833f00 163 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 61 3.1E-18 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDG55_04960 124b872955d2acb30208fb1459833f00 163 Pfam PF01467 Cytidylyltransferase-like 7 135 7.3E-21 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 Gene3D G3DSA:3.30.160.270 377 549 2.1E-53 T 13-10-2018 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 SUPERFAMILY SSF110921 444 549 3.79E-30 T 13-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 SUPERFAMILY SSF89000 388 438 2.55E-15 T 13-10-2018 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 7 551 52.196 T 13-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 SMART SM00917 422 550 1.7E-27 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 Pfam PF00682 HMGL-like 33 313 2.2E-77 T 13-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 Pfam PF08502 LeuA allosteric (dimerisation) domain 422 549 4.8E-23 T 13-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 Gene3D G3DSA:3.20.20.70 10 376 1.3E-152 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 SUPERFAMILY SSF51569 22 330 2.38E-98 T 13-10-2018 CDG55_03415 89bd5613543b7152136830e3e9e169ab 565 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 6 550 7.9E-230 T 13-10-2018 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 CDG55_02115 0a280c25499ac70a6b55218414381ce9 130 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 10 114 2.6E-13 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CDG55_02115 0a280c25499ac70a6b55218414381ce9 130 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 6 126 3.2E-17 T 13-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CDG55_02115 0a280c25499ac70a6b55218414381ce9 130 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 10 127 1.1E-17 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CDG55_02115 0a280c25499ac70a6b55218414381ce9 130 SUPERFAMILY SSF56214 6 126 2.09E-18 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CDG55_02115 0a280c25499ac70a6b55218414381ce9 130 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 12 126 3.0E-11 T 13-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 CDG55_02115 0a280c25499ac70a6b55218414381ce9 130 Gene3D G3DSA:3.90.470.20 5 127 7.0E-26 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CDG55_13130 e384f3f0a12a1e80fd95ffcd101acd64 205 SUPERFAMILY SSF88659 125 194 1.03E-13 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CDG55_13130 e384f3f0a12a1e80fd95ffcd101acd64 205 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 20 193 2.0E-28 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CDG55_13130 e384f3f0a12a1e80fd95ffcd101acd64 205 Gene3D G3DSA:1.10.1740.10 5 88 5.8E-16 T 13-10-2018 CDG55_13130 e384f3f0a12a1e80fd95ffcd101acd64 205 SUPERFAMILY SSF88946 19 103 1.53E-17 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CDG55_13130 e384f3f0a12a1e80fd95ffcd101acd64 205 Pfam PF08281 Sigma-70, region 4 138 189 9.6E-11 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDG55_13130 e384f3f0a12a1e80fd95ffcd101acd64 205 TIGRFAM TIGR02943 Sig70_famx1: RNA polymerase sigma-70 factor, TIGR02943 family 17 201 2.8E-72 T 13-10-2018 IPR014289 RNA polymerase sigma-24-related CDG55_13130 e384f3f0a12a1e80fd95ffcd101acd64 205 Pfam PF04542 Sigma-70 region 2 23 87 1.1E-12 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CDG55_13130 e384f3f0a12a1e80fd95ffcd101acd64 205 Gene3D G3DSA:1.10.10.10 109 196 2.6E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04850 5fbcf74525f88987160773f9892cb4ca 190 SUPERFAMILY SSF52218 13 183 9.44E-48 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_04850 5fbcf74525f88987160773f9892cb4ca 190 Gene3D G3DSA:3.40.50.360 8 188 1.3E-51 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_04850 5fbcf74525f88987160773f9892cb4ca 190 Pfam PF03358 NADPH-dependent FMN reductase 19 126 6.9E-12 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 2.5E-50 T 13-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 314 48.604 T 13-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 Gene3D G3DSA:3.40.50.2020 7 302 4.9E-132 T 13-10-2018 CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 SUPERFAMILY SSF53271 5 99 4.4E-5 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 5 314 8.3E-123 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 Gene3D G3DSA:3.40.50.2020 148 290 4.9E-132 T 13-10-2018 CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 Pfam PF14572 Phosphoribosyl synthetase-associated domain 198 313 3.2E-28 T 13-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 SUPERFAMILY SSF53271 69 306 2.74E-65 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CDG55_04785 70dc9f742f1a5cc7b13efe27367c5114 317 SMART SM01400 4 121 1.0E-78 T 13-10-2018 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 15 354 35.309 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 SUPERFAMILY SSF55307 209 325 3.89E-36 T 13-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 SMART SM00865 212 331 2.7E-45 T 13-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 SUPERFAMILY SSF52490 18 213 1.7E-66 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 Pfam PF12327 FtsZ family, C-terminal domain 227 322 1.7E-30 T 13-10-2018 IPR024757 Cell division protein FtsZ, C-terminal CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 Gene3D G3DSA:3.40.50.1440 16 323 7.3E-113 T 13-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 21 179 4.5E-41 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 PRINTS PR00423 Cell division protein FtsZ signature 194 216 1.0E-43 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 PRINTS PR00423 Cell division protein FtsZ signature 132 153 1.0E-43 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 PRINTS PR00423 Cell division protein FtsZ signature 104 124 1.0E-43 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 PRINTS PR00423 Cell division protein FtsZ signature 217 238 1.0E-43 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 SMART SM00864 19 210 1.4E-108 T 13-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 CDG55_01805 6cc0e584cb1d2200c445d12e3b204f48 393 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 14 334 1.1E-121 T 13-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 127 216 1.5E-26 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 Gene3D G3DSA:1.10.8.50 129 267 3.8E-43 T 13-10-2018 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 SUPERFAMILY SSF81624 2 136 7.85E-36 T 13-10-2018 IPR035937 MutM-like, N-terminal CDG55_11555 304db883526761a983e6fa3ec84f4256 273 Pfam PF06827 Zinc finger found in FPG and IleRS 239 267 4.3E-8 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 SMART SM00898 2 113 3.6E-46 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 267 39.278 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 266 1.0E-88 T 13-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 SUPERFAMILY SSF46946 128 220 8.1E-28 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 SMART SM01232 127 219 7.5E-43 T 13-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 SUPERFAMILY SSF57716 215 267 1.2E-15 T 13-10-2018 CDG55_11555 304db883526761a983e6fa3ec84f4256 273 Gene3D G3DSA:3.20.190.10 2 126 2.3E-36 T 13-10-2018 IPR035937 MutM-like, N-terminal CDG55_11555 304db883526761a983e6fa3ec84f4256 273 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 111 1.2E-28 T 13-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 Gene3D G3DSA:3.30.1360.70 1 111 1.2E-23 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 5 91 3.8E-21 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 Pfam PF05746 DALR anticodon binding domain 475 599 1.9E-30 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 PRINTS PR01038 Arginyl-tRNA synthetase signature 120 135 2.6E-19 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 PRINTS PR01038 Arginyl-tRNA synthetase signature 159 172 2.6E-19 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 PRINTS PR01038 Arginyl-tRNA synthetase signature 344 365 2.6E-19 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 PRINTS PR01038 Arginyl-tRNA synthetase signature 135 151 2.6E-19 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 Gene3D G3DSA:1.10.730.10 470 599 6.5E-30 T 13-10-2018 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 Pfam PF00750 tRNA synthetases class I (R) 101 177 7.3E-11 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 Pfam PF00750 tRNA synthetases class I (R) 272 454 2.4E-12 T 13-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 599 24.922 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 4 599 1.1E-127 T 13-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 SMART SM01016 3 91 5.0E-33 T 13-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 SUPERFAMILY SSF47323 469 599 6.41E-30 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 SUPERFAMILY SSF52374 116 485 1.82E-82 T 13-10-2018 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 SUPERFAMILY SSF55190 19 111 3.53E-23 T 13-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 CDG55_14330 aa3e4e6c10778d0cace091f4b1a5bb73 599 SMART SM00836 475 599 4.1E-46 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 194 273 1.6E-28 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 SMART SM00342 24 107 7.1E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 Pfam PF12833 Helix-turn-helix domain 30 108 1.0E-14 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 SUPERFAMILY SSF46689 62 109 2.73E-5 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 Gene3D G3DSA:1.10.10.60 5 105 3.5E-23 T 13-10-2018 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 SUPERFAMILY SSF53155 113 191 8.04E-17 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 SUPERFAMILY SSF46767 192 274 1.09E-29 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 Gene3D G3DSA:1.10.10.10 192 277 6.8E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 193 271 5.1E-30 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 Gene3D G3DSA:3.30.160.70 106 191 9.9E-21 T 13-10-2018 CDG55_03660 7e151d8601d9bbcf7119f517a2ff42fa 280 SUPERFAMILY SSF46689 7 58 9.86E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 SUPERFAMILY SSF52540 32 222 6.8E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 2 355 2.1E-133 T 13-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 SUPERFAMILY SSF48019 242 364 6.46E-27 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 Pfam PF13177 DNA polymerase III, delta subunit 19 177 3.0E-40 T 13-10-2018 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 SMART SM00382 36 177 3.5E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 Gene3D G3DSA:1.20.272.10 241 361 2.6E-31 T 13-10-2018 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 Gene3D G3DSA:1.10.8.60 7 239 1.4E-103 T 13-10-2018 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 Gene3D G3DSA:3.40.50.300 12 176 1.4E-103 T 13-10-2018 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 123 141 1.9E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 40 58 1.9E-5 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 553 678 1.4E-6 T 13-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_09160 ce93a9ebdcbc1719f82b0ff00a6ac1fe 684 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 231 362 5.6E-27 T 13-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 CDG55_07025 8afa8dac08203b5717a68255f6788e03 106 Gene3D G3DSA:2.60.300.12 1 106 1.4E-37 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CDG55_07025 8afa8dac08203b5717a68255f6788e03 106 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 2 106 6.2E-37 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 CDG55_07025 8afa8dac08203b5717a68255f6788e03 106 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 2 106 5.1E-52 T 13-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 CDG55_07025 8afa8dac08203b5717a68255f6788e03 106 SUPERFAMILY SSF89360 1 95 1.57E-32 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CDG55_07025 8afa8dac08203b5717a68255f6788e03 106 Pfam PF01521 Iron-sulphur cluster biosynthesis 2 102 4.7E-23 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 Gene3D G3DSA:3.40.50.720 1 181 9.7E-80 T 13-10-2018 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 2.1E-59 T 13-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 PIRSF PIRSF000116 201 333 1.7E-13 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 PIRSF PIRSF000116 2 204 1.9E-53 T 13-10-2018 IPR014359 Ketol-acid reductoisomerase, prokaryotic GO:0004455|GO:0009082|GO:0050661|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 SUPERFAMILY SSF48179 183 332 1.14E-65 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 Gene3D G3DSA:1.10.3730.40 182 338 3.1E-71 T 13-10-2018 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 SUPERFAMILY SSF51735 1 182 2.85E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 1 328 44.862 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 1.0E-75 T 13-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDG55_12680 19d311e6a369fbccc8b90d7007b5a66b 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 6.1E-132 T 13-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 CDG55_07000 31c1774a4c2101139f0eda86da183a70 478 SMART SM00044 191 388 2.1E-17 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDG55_07000 31c1774a4c2101139f0eda86da183a70 478 SUPERFAMILY SSF55073 223 407 3.77E-54 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_07000 31c1774a4c2101139f0eda86da183a70 478 Gene3D G3DSA:3.30.70.1230 218 411 3.8E-64 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_07000 31c1774a4c2101139f0eda86da183a70 478 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 225 407 8.0E-34 T 13-10-2018 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 CDG55_14105 36fa01b7faf9bcc4b29437bc18b15a44 793 Pfam PF11842 Domain of unknown function (DUF3362) 632 773 1.2E-63 T 13-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal CDG55_14105 36fa01b7faf9bcc4b29437bc18b15a44 793 Gene3D G3DSA:3.80.30.20 414 678 4.9E-15 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CDG55_14105 36fa01b7faf9bcc4b29437bc18b15a44 793 SMART SM00729 414 664 2.3E-9 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CDG55_14105 36fa01b7faf9bcc4b29437bc18b15a44 793 Pfam PF04055 Radical SAM superfamily 418 621 7.5E-19 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_14105 36fa01b7faf9bcc4b29437bc18b15a44 793 Pfam PF08497 Radical SAM N-terminal 30 417 8.4E-141 T 13-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal CDG55_14105 36fa01b7faf9bcc4b29437bc18b15a44 793 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 30 682 2.1E-257 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 CDG55_14105 36fa01b7faf9bcc4b29437bc18b15a44 793 SUPERFAMILY SSF102114 416 660 1.96E-11 T 13-10-2018 CDG55_14105 36fa01b7faf9bcc4b29437bc18b15a44 793 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 30 684 48.978 T 13-10-2018 IPR022946 Uncharacterised protein family UPF0313 CDG55_00645 7ad3d16d05e1544621148aeb9bf12b22 1066 Pfam PF00589 Phage integrase family 589 731 8.8E-8 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_00645 7ad3d16d05e1544621148aeb9bf12b22 1066 SUPERFAMILY SSF56349 588 800 1.94E-14 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_14340 5ed81792ef065164eff8adaee2df0c6e 217 Gene3D G3DSA:1.20.1050.10 84 208 4.1E-25 T 13-10-2018 CDG55_14340 5ed81792ef065164eff8adaee2df0c6e 217 Gene3D G3DSA:3.40.30.10 1 83 1.5E-29 T 13-10-2018 CDG55_14340 5ed81792ef065164eff8adaee2df0c6e 217 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 73 9.3E-16 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_14340 5ed81792ef065164eff8adaee2df0c6e 217 Pfam PF14497 Glutathione S-transferase, C-terminal domain 136 205 7.0E-7 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CDG55_14340 5ed81792ef065164eff8adaee2df0c6e 217 SUPERFAMILY SSF47616 84 207 6.82E-21 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CDG55_14340 5ed81792ef065164eff8adaee2df0c6e 217 SUPERFAMILY SSF52833 1 79 2.49E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_00940 55c9e4c1e781005efb3e67b1dfe21da1 62 Pfam PF00403 Heavy-metal-associated domain 3 59 3.5E-11 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDG55_00940 55c9e4c1e781005efb3e67b1dfe21da1 62 Gene3D G3DSA:3.30.70.100 1 61 3.0E-17 T 13-10-2018 CDG55_00940 55c9e4c1e781005efb3e67b1dfe21da1 62 SUPERFAMILY SSF55008 2 61 2.88E-13 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 Pfam PF00842 Alanine racemase, C-terminal domain 233 353 6.3E-40 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 1.1E-58 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 Hamap MF_01201 Alanine racemase. 1 356 32.072 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 Gene3D G3DSA:3.20.20.10 10 217 1.1E-133 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 155 166 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 338 351 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 287 304 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 266 281 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 192 219 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 249 264 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 60 78 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 123 135 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 PRINTS PR00992 Alanine racemase signature 26 42 3.8E-63 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 Gene3D G3DSA:2.40.37.10 8 350 1.1E-133 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 SUPERFAMILY SSF51419 8 234 8.0E-59 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 TIGRFAM TIGR00492 alr: alanine racemase 2 356 8.0E-101 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 SUPERFAMILY SSF50621 227 355 1.05E-43 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDG55_09735 acb8e1a4de1b0f498d1d5237fc0b7739 356 SMART SM01005 233 356 2.4E-59 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_04115 aacdd77dffacfd81a131cf6668e0b956 555 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 16 554 1.8E-70 T 13-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) CDG55_04115 aacdd77dffacfd81a131cf6668e0b956 555 SUPERFAMILY SSF56935 33 552 4.4E-51 T 13-10-2018 CDG55_04115 aacdd77dffacfd81a131cf6668e0b956 555 Gene3D G3DSA:2.40.160.60 114 555 3.0E-56 T 13-10-2018 CDG55_10320 37dc04342d83ffec4f3134e0de75d502 615 TIGRFAM TIGR04214 CSLREA_Nterm: CSLREA domain 22 47 2.7E-10 T 13-10-2018 IPR026457 CSLREA domain CDG55_10320 37dc04342d83ffec4f3134e0de75d502 615 SUPERFAMILY SSF51126 7 458 1.57E-10 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CDG55_10320 37dc04342d83ffec4f3134e0de75d502 615 TIGRFAM TIGR04212 GlyGly_RbtA: rhombotarget A 1 613 2.0E-266 T 13-10-2018 IPR026454 Rhombotarget A CDG55_11160 2208062977541e2cdab8bef8b176fdd5 545 Pfam PF08019 Domain of unknown function (DUF1705) 59 208 2.2E-41 T 13-10-2018 IPR012549 Phosphoethanolamine transferase, N-terminal GO:0016021 CDG55_11160 2208062977541e2cdab8bef8b176fdd5 545 Pfam PF00884 Sulfatase 236 527 9.5E-56 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CDG55_11160 2208062977541e2cdab8bef8b176fdd5 545 SUPERFAMILY SSF53649 232 529 2.62E-23 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CDG55_11160 2208062977541e2cdab8bef8b176fdd5 545 Gene3D G3DSA:3.40.720.10 214 545 3.9E-91 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 SUPERFAMILY SSF109604 15 194 6.91E-59 T 13-10-2018 CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 SMART SM00954 235 345 2.2E-6 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 Pfam PF13328 HD domain 32 178 5.1E-38 T 13-10-2018 IPR003607 HD/PDEase domain CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 SUPERFAMILY SSF81271 381 440 3.49E-14 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 SUPERFAMILY SSF81301 200 354 8.17E-19 T 13-10-2018 CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 SMART SM00471 47 157 1.5E-10 T 13-10-2018 IPR003607 HD/PDEase domain CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 Gene3D G3DSA:1.10.3210.10 3 194 1.0E-65 T 13-10-2018 CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 Gene3D G3DSA:3.10.20.30 375 445 7.0E-21 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 Pfam PF02824 TGS domain 381 440 2.7E-15 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CDG55_02670 b18019a5ad5af253b006cb0939ab3296 702 Gene3D G3DSA:3.30.460.10 197 325 6.0E-8 T 13-10-2018 CDG55_02915 1f59bc39e0a504d81b923bb8763ca65c 420 Gene3D G3DSA:3.20.20.70 44 272 6.4E-11 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_02915 1f59bc39e0a504d81b923bb8763ca65c 420 SUPERFAMILY SSF47781 303 381 2.11E-11 T 13-10-2018 IPR010994 RuvA domain 2-like CDG55_02915 1f59bc39e0a504d81b923bb8763ca65c 420 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 5 418 1.5E-208 T 13-10-2018 IPR023874 DNA modification/repair radical SAM protein, putative CDG55_02915 1f59bc39e0a504d81b923bb8763ca65c 420 SUPERFAMILY SSF102114 41 268 1.31E-15 T 13-10-2018 CDG55_02915 1f59bc39e0a504d81b923bb8763ca65c 420 Gene3D G3DSA:1.10.150.320 312 376 1.0E-6 T 13-10-2018 CDG55_08485 183d5bf478cd9bc76c36c90c4b79c969 543 Hamap MF_01227 CTP synthase [pyrG]. 2 541 49.398 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CDG55_08485 183d5bf478cd9bc76c36c90c4b79c969 543 Gene3D G3DSA:3.40.50.300 1 285 8.8E-123 T 13-10-2018 CDG55_08485 183d5bf478cd9bc76c36c90c4b79c969 543 TIGRFAM TIGR00337 PyrG: CTP synthase 2 536 2.1E-241 T 13-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CDG55_08485 183d5bf478cd9bc76c36c90c4b79c969 543 SUPERFAMILY SSF52540 1 267 1.31E-114 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08485 183d5bf478cd9bc76c36c90c4b79c969 543 Pfam PF00117 Glutamine amidotransferase class-I 302 536 3.9E-59 T 13-10-2018 IPR017926 Glutamine amidotransferase CDG55_08485 183d5bf478cd9bc76c36c90c4b79c969 543 Pfam PF06418 CTP synthase N-terminus 4 264 1.2E-118 T 13-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 CDG55_08485 183d5bf478cd9bc76c36c90c4b79c969 543 SUPERFAMILY SSF52317 290 542 1.07E-84 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_08485 183d5bf478cd9bc76c36c90c4b79c969 543 Gene3D G3DSA:3.40.50.880 287 543 2.0E-102 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_12090 d18bfcf99a3aaf5cdf80acb73d488534 411 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 30 388 76.985 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 CDG55_12090 d18bfcf99a3aaf5cdf80acb73d488534 411 Gene3D G3DSA:3.20.20.70 92 373 3.7E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_12090 d18bfcf99a3aaf5cdf80acb73d488534 411 SUPERFAMILY SSF102114 136 352 1.57E-15 T 13-10-2018 CDG55_12090 d18bfcf99a3aaf5cdf80acb73d488534 411 PIRSF PIRSF006004 22 402 5.6E-149 T 13-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 CDG55_12090 d18bfcf99a3aaf5cdf80acb73d488534 411 Pfam PF04055 Radical SAM superfamily 140 313 1.7E-17 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_12090 d18bfcf99a3aaf5cdf80acb73d488534 411 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 26 393 1.4E-144 T 13-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 CDG55_12090 d18bfcf99a3aaf5cdf80acb73d488534 411 Gene3D G3DSA:1.10.150.530 14 91 1.7E-26 T 13-10-2018 CDG55_08470 ac3d3db6e604497bf5df8ff2768e37bf 239 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 50 223 6.7E-16 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain CDG55_08470 ac3d3db6e604497bf5df8ff2768e37bf 239 SUPERFAMILY SSF52266 43 234 7.02E-33 T 13-10-2018 CDG55_08470 ac3d3db6e604497bf5df8ff2768e37bf 239 Gene3D G3DSA:3.40.50.1110 30 238 1.8E-25 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CDG55_01185 59672b170ee3f149fb30f826758bd1b6 360 SUPERFAMILY SSF52540 1 334 2.28E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01185 59672b170ee3f149fb30f826758bd1b6 360 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 336 1.6E-23 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal CDG55_01185 59672b170ee3f149fb30f826758bd1b6 360 Gene3D G3DSA:3.40.50.300 6 329 1.9E-75 T 13-10-2018 CDG55_01185 59672b170ee3f149fb30f826758bd1b6 360 Gene3D G3DSA:1.20.1050.90 116 294 1.9E-75 T 13-10-2018 CDG55_01185 59672b170ee3f149fb30f826758bd1b6 360 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 360 77.714 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CDG55_01185 59672b170ee3f149fb30f826758bd1b6 360 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 355 2.6E-81 T 13-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 CDG55_06580 fb24d1df49c009490c0b04e36d0883e4 699 SUPERFAMILY SSF55785 146 235 1.92E-7 T 13-10-2018 IPR035965 PAS domain superfamily CDG55_06580 fb24d1df49c009490c0b04e36d0883e4 699 SUPERFAMILY SSF141868 454 688 7.85E-26 T 13-10-2018 IPR035919 EAL domain superfamily CDG55_06580 fb24d1df49c009490c0b04e36d0883e4 699 SMART SM00052 448 694 1.2E-7 T 13-10-2018 IPR001633 EAL domain CDG55_06580 fb24d1df49c009490c0b04e36d0883e4 699 Gene3D G3DSA:3.20.20.450 451 697 8.8E-27 T 13-10-2018 IPR035919 EAL domain superfamily CDG55_06580 fb24d1df49c009490c0b04e36d0883e4 699 Gene3D G3DSA:3.30.450.20 143 259 6.0E-7 T 13-10-2018 CDG55_06580 fb24d1df49c009490c0b04e36d0883e4 699 Pfam PF00563 EAL domain 454 688 1.5E-21 T 13-10-2018 IPR001633 EAL domain CDG55_08720 d4752441350af12260bbd3505ca62a45 412 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 25 410 35.59 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 CDG55_08720 d4752441350af12260bbd3505ca62a45 412 SUPERFAMILY SSF53756 27 386 2.38E-27 T 13-10-2018 CDG55_08720 d4752441350af12260bbd3505ca62a45 412 Gene3D G3DSA:3.40.50.2000 224 390 7.1E-7 T 13-10-2018 CDG55_08720 d4752441350af12260bbd3505ca62a45 412 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 27 394 1.2E-98 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 CDG55_08720 d4752441350af12260bbd3505ca62a45 412 Pfam PF02684 Lipid-A-disaccharide synthetase 28 390 2.8E-103 T 13-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 CDG55_13235 da262c995feecb59779987d75fd32c18 89 SUPERFAMILY SSF47060 3 89 2.18E-34 T 13-10-2018 IPR009068 S15/NS1, RNA-binding CDG55_13235 da262c995feecb59779987d75fd32c18 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 2.2E-37 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13235 da262c995feecb59779987d75fd32c18 89 SMART SM01387 8 88 2.0E-50 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13235 da262c995feecb59779987d75fd32c18 89 Gene3D G3DSA:1.10.287.10 2 89 2.0E-34 T 13-10-2018 CDG55_13235 da262c995feecb59779987d75fd32c18 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 20.913 T 13-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13235 da262c995feecb59779987d75fd32c18 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 7.0E-39 T 13-10-2018 CDG55_13235 da262c995feecb59779987d75fd32c18 89 Pfam PF00312 Ribosomal protein S15 9 88 1.3E-35 T 13-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 431 3.8E-175 T 13-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 SMART SM00962 100 296 8.6E-113 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 SUPERFAMILY SSF47446 298 432 1.57E-43 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 SMART SM00963 1 86 1.3E-36 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 SMART SM00382 99 252 1.5E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 Pfam PF02978 Signal peptide binding domain 329 429 1.0E-29 T 13-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 Gene3D G3DSA:1.10.260.30 310 447 4.1E-37 T 13-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 442 33.885 T 13-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 Gene3D G3DSA:1.20.120.140 5 305 2.0E-122 T 13-10-2018 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 4.5E-22 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 Pfam PF00448 SRP54-type protein, GTPase domain 101 296 2.8E-73 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 Gene3D G3DSA:3.40.50.300 90 285 2.0E-122 T 13-10-2018 CDG55_04560 e07a80bf4294e1366c8d5830e98e58fb 468 SUPERFAMILY SSF52540 42 351 3.64E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 SUPERFAMILY SSF51971 350 538 2.24E-40 T 13-10-2018 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 23 348 8.7E-86 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 SUPERFAMILY SSF51905 487 645 6.65E-21 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 393 656 3.8E-26 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 Gene3D G3DSA:3.20.20.70 19 385 1.6E-123 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 Gene3D G3DSA:3.50.50.60 489 643 1.6E-114 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 SUPERFAMILY SSF51395 19 379 1.49E-110 T 13-10-2018 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 393 415 1.9E-7 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 513 537 1.9E-7 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 394 413 6.9E-17 T 13-10-2018 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 517 535 6.9E-17 T 13-10-2018 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 477 495 6.9E-17 T 13-10-2018 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 636 652 6.9E-17 T 13-10-2018 CDG55_08460 4803cdf15bfc4917b5046d44a298996b 690 Gene3D G3DSA:3.40.50.720 392 683 1.6E-114 T 13-10-2018 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.7E-17 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.7E-17 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.7E-17 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.7E-17 T 13-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 Pfam PF03129 Anticodon binding domain 478 569 7.2E-18 T 13-10-2018 IPR004154 Anticodon-binding CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 41.15 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 Gene3D G3DSA:3.90.960.10 240 392 3.8E-235 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 SUPERFAMILY SSF55681 10 481 2.95E-104 T 13-10-2018 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 Gene3D G3DSA:3.30.930.10 11 468 3.8E-235 T 13-10-2018 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 Gene3D G3DSA:3.40.50.800 4 556 3.8E-235 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 462 1.1E-48 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 568 1.2E-252 T 13-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 SUPERFAMILY SSF55826 218 393 6.41E-24 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 Pfam PF04073 Aminoacyl-tRNA editing domain 256 379 1.8E-19 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 SUPERFAMILY SSF52954 466 570 2.62E-29 T 13-10-2018 CDG55_11505 cb269d77baaa7fb18f55c1ad165e9dd7 571 PIRSF PIRSF001535 1 571 4.5E-261 T 13-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 CDG55_13015 55e9939618da3c6cdf23bf0409616548 384 Pfam PF04055 Radical SAM superfamily 15 188 1.8E-21 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_13015 55e9939618da3c6cdf23bf0409616548 384 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 11 376 4.0E-110 T 13-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 CDG55_13015 55e9939618da3c6cdf23bf0409616548 384 Pfam PF06969 HemN C-terminal domain 312 372 4.3E-13 T 13-10-2018 IPR010723 HemN, C-terminal CDG55_13015 55e9939618da3c6cdf23bf0409616548 384 SMART SM00729 10 230 9.9E-51 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CDG55_13015 55e9939618da3c6cdf23bf0409616548 384 Gene3D G3DSA:3.80.30.20 2 311 6.8E-93 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CDG55_13015 55e9939618da3c6cdf23bf0409616548 384 SUPERFAMILY SSF102114 10 384 1.96E-101 T 13-10-2018 CDG55_05650 44852046da42b939e3627e311e4217e8 942 Gene3D G3DSA:2.30.30.140 2 54 4.3E-24 T 13-10-2018 CDG55_05650 44852046da42b939e3627e311e4217e8 942 Gene3D G3DSA:3.40.50.300 437 609 1.7E-37 T 13-10-2018 CDG55_05650 44852046da42b939e3627e311e4217e8 942 SUPERFAMILY SSF52540 279 616 1.1E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05650 44852046da42b939e3627e311e4217e8 942 Gene3D G3DSA:3.30.360.80 688 759 7.6E-21 T 13-10-2018 CDG55_05650 44852046da42b939e3627e311e4217e8 942 Gene3D G3DSA:3.40.50.10810 153 424 8.0E-86 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily CDG55_05650 44852046da42b939e3627e311e4217e8 942 Pfam PF12137 RNA polymerase recycling family C-terminal 582 939 2.2E-120 T 13-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 CDG55_05650 44852046da42b939e3627e311e4217e8 942 SMART SM00490 493 577 5.8E-15 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_05650 44852046da42b939e3627e311e4217e8 942 SUPERFAMILY SSF52540 156 381 7.08E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05650 44852046da42b939e3627e311e4217e8 942 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 2 940 26.552 T 13-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 CDG55_05650 44852046da42b939e3627e311e4217e8 942 Pfam PF00271 Helicase conserved C-terminal domain 469 577 2.4E-11 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_05650 44852046da42b939e3627e311e4217e8 942 Pfam PF00176 SNF2 family N-terminal domain 177 349 1.6E-11 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 CDG55_05650 44852046da42b939e3627e311e4217e8 942 SMART SM00487 153 352 1.9E-18 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_00585 845acd50debeee50b331b2469a35b773 390 SUPERFAMILY SSF46785 22 161 1.2E-13 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00585 845acd50debeee50b331b2469a35b773 390 Pfam PF01051 Initiator Replication protein 24 264 5.5E-32 T 13-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 CDG55_00585 845acd50debeee50b331b2469a35b773 390 SUPERFAMILY SSF46785 162 266 5.85E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00585 845acd50debeee50b331b2469a35b773 390 Gene3D G3DSA:1.10.10.10 175 272 8.7E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_00585 845acd50debeee50b331b2469a35b773 390 Gene3D G3DSA:1.10.10.10 16 174 7.8E-13 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_05195 0b3f55ae5cab7038b06963f6c4bbbe29 260 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 259 6.8E-40 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CDG55_05195 0b3f55ae5cab7038b06963f6c4bbbe29 260 SUPERFAMILY SSF52096 5 259 2.03E-57 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_05195 0b3f55ae5cab7038b06963f6c4bbbe29 260 Gene3D G3DSA:3.90.226.10 3 201 3.9E-55 T 13-10-2018 CDG55_05195 0b3f55ae5cab7038b06963f6c4bbbe29 260 Gene3D G3DSA:1.10.12.10 203 260 1.2E-16 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal CDG55_03240 917f4ceaf1a550c9e8514e500231e657 121 SUPERFAMILY SSF64263 1 119 3.01E-48 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03240 917f4ceaf1a550c9e8514e500231e657 121 Gene3D G3DSA:3.90.1030.10 1 117 7.8E-45 T 13-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03240 917f4ceaf1a550c9e8514e500231e657 121 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.294 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03240 917f4ceaf1a550c9e8514e500231e657 121 Pfam PF01196 Ribosomal protein L17 20 116 5.0E-33 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03240 917f4ceaf1a550c9e8514e500231e657 121 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 8.0E-45 T 13-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_01520 fb207202933a915a3333a2a8b35ab9d5 406 Pfam PF12710 haloacid dehalogenase-like hydrolase 194 361 7.1E-22 T 13-10-2018 CDG55_01520 fb207202933a915a3333a2a8b35ab9d5 406 SUPERFAMILY SSF55021 1 82 2.04E-9 T 13-10-2018 CDG55_01520 fb207202933a915a3333a2a8b35ab9d5 406 Gene3D G3DSA:3.40.50.1000 105 397 1.2E-84 T 13-10-2018 IPR023214 HAD superfamily CDG55_01520 fb207202933a915a3333a2a8b35ab9d5 406 SUPERFAMILY SSF56784 189 396 6.4E-53 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_01520 fb207202933a915a3333a2a8b35ab9d5 406 Gene3D G3DSA:3.30.70.260 2 84 1.3E-8 T 13-10-2018 CDG55_01520 fb207202933a915a3333a2a8b35ab9d5 406 Pfam PF13740 ACT domain 3 79 5.4E-22 T 13-10-2018 CDG55_01520 fb207202933a915a3333a2a8b35ab9d5 406 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 178 396 2.1E-81 T 13-10-2018 CDG55_01520 fb207202933a915a3333a2a8b35ab9d5 406 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 193 363 2.5E-31 T 13-10-2018 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Pfam PF00140 Sigma-70 factor, region 1.2 100 130 2.2E-12 T 13-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Pfam PF04545 Sigma-70, region 4 560 613 5.4E-18 T 13-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 6 625 44.214 T 13-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 388 624 2.9E-122 T 13-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Pfam PF03979 Sigma-70 factor, region 1.1 8 83 7.2E-27 T 13-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Gene3D G3DSA:1.10.10.10 465 540 1.1E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Gene3D G3DSA:1.10.220.120 4 66 7.2E-26 T 13-10-2018 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 SUPERFAMILY SSF88659 465 538 1.4E-20 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 SUPERFAMILY SSF88659 522 624 4.3E-27 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Gene3D G3DSA:1.10.10.10 541 626 2.9E-36 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Pfam PF04546 Sigma-70, non-essential region 141 361 1.2E-52 T 13-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Gene3D G3DSA:1.10.601.10 115 461 1.4E-129 T 13-10-2018 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Pfam PF04539 Sigma-70 region 3 471 547 4.4E-31 T 13-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 PRINTS PR00046 Major sigma-70 factor signature 564 576 5.0E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 PRINTS PR00046 Major sigma-70 factor signature 440 448 5.0E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 PRINTS PR00046 Major sigma-70 factor signature 600 611 5.0E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 PRINTS PR00046 Major sigma-70 factor signature 585 600 5.0E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 PRINTS PR00046 Major sigma-70 factor signature 416 429 5.0E-31 T 13-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 388 613 5.2E-38 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 SUPERFAMILY SSF88946 117 459 6.62E-94 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CDG55_10965 71bcf89da68784d1422e970eb9ab952f 627 Pfam PF04542 Sigma-70 region 2 392 461 1.8E-21 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CDG55_14070 197a18eaf7bef09d8952f0abd5d45254 237 Gene3D G3DSA:1.10.10.10 135 236 4.2E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_14070 197a18eaf7bef09d8952f0abd5d45254 237 SUPERFAMILY SSF46894 141 235 1.56E-26 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_14070 197a18eaf7bef09d8952f0abd5d45254 237 SMART SM00862 159 234 8.3E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_14070 197a18eaf7bef09d8952f0abd5d45254 237 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 234 8.4E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_14070 197a18eaf7bef09d8952f0abd5d45254 237 Gene3D G3DSA:3.40.50.2300 1 123 5.0E-35 T 13-10-2018 CDG55_14070 197a18eaf7bef09d8952f0abd5d45254 237 SMART SM00448 4 114 1.1E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_14070 197a18eaf7bef09d8952f0abd5d45254 237 Pfam PF00072 Response regulator receiver domain 6 115 1.7E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_14070 197a18eaf7bef09d8952f0abd5d45254 237 SUPERFAMILY SSF52172 2 129 1.57E-39 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 Gene3D G3DSA:3.30.450.20 286 394 8.5E-18 T 13-10-2018 CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 524 684 2.4E-21 T 13-10-2018 IPR000160 GGDEF domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 Gene3D G3DSA:3.30.70.270 520 697 1.2E-38 T 13-10-2018 CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SMART SM00267 514 685 5.4E-28 T 13-10-2018 IPR000160 GGDEF domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SMART SM00091 398 464 3.7E-4 T 13-10-2018 IPR000014 PAS domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 Pfam PF00990 Diguanylate cyclase, GGDEF domain 526 680 5.6E-30 T 13-10-2018 IPR000160 GGDEF domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 Gene3D G3DSA:3.20.20.450 698 949 5.4E-93 T 13-10-2018 IPR035919 EAL domain superfamily CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SUPERFAMILY SSF141868 702 950 1.27E-83 T 13-10-2018 IPR035919 EAL domain superfamily CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 Pfam PF08447 PAS fold 311 384 1.5E-14 T 13-10-2018 IPR013655 PAS fold-3 GO:0005515 CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 Pfam PF13426 PAS domain 409 513 4.0E-9 T 13-10-2018 IPR000014 PAS domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SUPERFAMILY SSF55785 409 521 8.03E-14 T 13-10-2018 IPR035965 PAS domain superfamily CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SMART SM00052 695 940 5.5E-105 T 13-10-2018 IPR001633 EAL domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SUPERFAMILY SSF55073 530 687 1.41E-30 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SUPERFAMILY SSF55785 318 392 1.69E-11 T 13-10-2018 IPR035965 PAS domain superfamily CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 Gene3D G3DSA:3.30.450.20 395 519 1.4E-18 T 13-10-2018 CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 Pfam PF00563 EAL domain 702 935 3.7E-72 T 13-10-2018 IPR001633 EAL domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 320 397 8.9E-8 T 13-10-2018 IPR000014 PAS domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 395 521 7.8E-13 T 13-10-2018 IPR000014 PAS domain CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SMART SM00086 346 390 1.5E-6 T 13-10-2018 IPR001610 PAC motif CDG55_09970 c79992f2acdaed64c701a8e3f2e381b4 958 SMART SM00086 472 514 80.0 T 13-10-2018 IPR001610 PAC motif CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 4 533 1.3E-169 T 13-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 6 19 7.7E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 248 259 7.7E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 289 304 7.7E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 38 52 7.7E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 86 97 7.7E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 PRINTS PR01041 Methionyl-tRNA synthetase signature 382 393 7.7E-24 T 13-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 Gene3D G3DSA:1.10.730.10 378 534 4.7E-35 T 13-10-2018 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 SUPERFAMILY SSF52374 3 385 9.21E-98 T 13-10-2018 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 SUPERFAMILY SSF50249 583 684 7.35E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 SUPERFAMILY SSF47323 384 597 5.23E-42 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 Pfam PF01588 Putative tRNA binding domain 590 683 5.1E-24 T 13-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 557 684 4.4E-41 T 13-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 Hamap MF_00098 Methionine--tRNA ligase [metG]. 2 544 39.002 T 13-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 Gene3D G3DSA:3.40.50.620 4 377 3.3E-147 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 SUPERFAMILY SSF57770 138 172 2.75E-12 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 Gene3D G3DSA:2.20.28.20 138 172 3.3E-147 T 13-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 Pfam PF09334 tRNA synthetases class I (M) 4 394 1.4E-149 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_04480 0480a9ea44751de77d25138d6b560ee4 685 Gene3D G3DSA:2.40.50.140 583 685 6.5E-33 T 13-10-2018 CDG55_05815 73f67bba1a42abfcb02fbac1078daa04 159 PIRSF PIRSF004505 1 158 2.1E-50 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CDG55_05815 73f67bba1a42abfcb02fbac1078daa04 159 Pfam PF02590 Predicted SPOUT methyltransferase 1 157 2.5E-50 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CDG55_05815 73f67bba1a42abfcb02fbac1078daa04 159 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 158 27.946 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CDG55_05815 73f67bba1a42abfcb02fbac1078daa04 159 SUPERFAMILY SSF75217 1 156 2.35E-50 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CDG55_05815 73f67bba1a42abfcb02fbac1078daa04 159 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 158 1.1E-51 T 13-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 CDG55_05815 73f67bba1a42abfcb02fbac1078daa04 159 Gene3D G3DSA:3.40.1280.10 1 158 4.1E-52 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.255 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-16 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-16 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-16 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 6.9E-36 T 13-10-2018 IPR027486 Ribosomal protein S10 domain CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 SMART SM01403 7 101 4.5E-55 T 13-10-2018 IPR027486 Ribosomal protein S10 domain CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 7.9E-45 T 13-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 SUPERFAMILY SSF54999 5 101 1.31E-36 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily CDG55_03105 30754b50b4a1c114facd78fddb6cd26e 103 Gene3D G3DSA:3.30.70.600 1 103 7.2E-37 T 13-10-2018 IPR036838 Ribosomal protein S10 domain superfamily CDG55_06420 c4e6109873ebb7974d2b02b2fcbf818c 148 Gene3D G3DSA:1.10.10.410 92 148 9.0E-18 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal CDG55_06420 c4e6109873ebb7974d2b02b2fcbf818c 148 Pfam PF09424 Yqey-like protein 5 147 2.1E-49 T 13-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 CDG55_06420 c4e6109873ebb7974d2b02b2fcbf818c 148 SUPERFAMILY SSF89095 3 148 1.15E-38 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 CDG55_06420 c4e6109873ebb7974d2b02b2fcbf818c 148 Gene3D G3DSA:1.10.1510.10 2 91 2.7E-25 T 13-10-2018 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 Gene3D G3DSA:2.40.50.140 66 131 6.2E-28 T 13-10-2018 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 Hamap MF_00141 Elongation factor P [efp]. 3 189 48.924 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 SMART SM01185 69 125 5.1E-24 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 SUPERFAMILY SSF50249 132 189 6.85E-17 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 Pfam PF09285 Elongation factor P, C-terminal 133 188 3.4E-24 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 125 1.2E-20 T 13-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 SUPERFAMILY SSF50249 69 130 4.28E-14 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 SMART SM00841 133 188 1.2E-30 T 13-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 62 2.3E-26 T 13-10-2018 IPR013185 Translation elongation factor, KOW-like CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 TIGRFAM TIGR00038 efp: translation elongation factor P 4 189 6.7E-76 T 13-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 SUPERFAMILY SSF50104 2 63 1.35E-21 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 Gene3D G3DSA:2.30.30.30 1 65 1.9E-28 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 PIRSF PIRSF005901 2 189 4.9E-63 T 13-10-2018 IPR020599 Translation elongation factor P/YeiP CDG55_06595 9f4a6f5a42b25c7f3cb15f2ab19ba893 189 Gene3D G3DSA:2.40.50.140 132 189 9.5E-27 T 13-10-2018 CDG55_06300 4d0b7ad9847dc0535d3672f15400d575 248 Pfam PF00005 ABC transporter 26 173 1.2E-34 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_06300 4d0b7ad9847dc0535d3672f15400d575 248 SUPERFAMILY SSF52540 11 243 2.32E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06300 4d0b7ad9847dc0535d3672f15400d575 248 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 222 243 5.7E-10 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CDG55_06300 4d0b7ad9847dc0535d3672f15400d575 248 Gene3D G3DSA:3.40.50.300 9 248 6.4E-69 T 13-10-2018 CDG55_06300 4d0b7ad9847dc0535d3672f15400d575 248 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 11 247 1.2E-119 T 13-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 CDG55_06300 4d0b7ad9847dc0535d3672f15400d575 248 SMART SM00382 35 220 1.0E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 5 438 6.5E-103 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 Gene3D G3DSA:3.40.50.12160 5 125 1.7E-28 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 SUPERFAMILY SSF102114 123 367 1.57E-52 T 13-10-2018 CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 5 438 3.9E-181 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 4 441 60.857 T 13-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 Pfam PF04055 Radical SAM superfamily 143 320 8.8E-28 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 Gene3D G3DSA:2.40.50.140 377 446 1.7E-19 T 13-10-2018 CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 Gene3D G3DSA:3.80.30.20 135 376 3.1E-71 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 SMART SM00729 137 362 2.3E-53 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CDG55_08955 2d7e8079387e370d3240f2bb3c879728 447 Pfam PF00919 Uncharacterized protein family UPF0004 5 95 9.7E-21 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CDG55_06410 2ec235904005dfba56aa2aa2551d101f 121 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 24 112 9.6E-18 T 13-10-2018 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801 CDG55_06410 2ec235904005dfba56aa2aa2551d101f 121 SUPERFAMILY SSF51316 1 119 4.6E-33 T 13-10-2018 IPR011057 Mss4-like superfamily CDG55_06410 2ec235904005dfba56aa2aa2551d101f 121 Gene3D G3DSA:2.170.150.70 2 116 4.1E-16 T 13-10-2018 CDG55_07575 0abf2569eb93d5db2edd952caede8000 337 PIRSF PIRSF005963 2 335 3.8E-128 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDG55_07575 0abf2569eb93d5db2edd952caede8000 337 SMART SM00729 81 286 8.6E-19 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CDG55_07575 0abf2569eb93d5db2edd952caede8000 337 Gene3D G3DSA:3.20.20.70 81 294 5.7E-22 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_07575 0abf2569eb93d5db2edd952caede8000 337 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 34 70 5.3E-7 T 13-10-2018 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDG55_07575 0abf2569eb93d5db2edd952caede8000 337 TIGRFAM TIGR00510 lipA: lipoyl synthase 31 310 2.1E-121 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDG55_07575 0abf2569eb93d5db2edd952caede8000 337 Hamap MF_00206 Lipoyl synthase [lipA]. 1 322 149.262 T 13-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDG55_07575 0abf2569eb93d5db2edd952caede8000 337 SUPERFAMILY SSF102114 48 313 5.62E-65 T 13-10-2018 CDG55_07575 0abf2569eb93d5db2edd952caede8000 337 Pfam PF04055 Radical SAM superfamily 88 249 2.5E-14 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_01595 8536cb44e1e2e6f5efb62e0c8246fee6 455 PIRSF PIRSF006603 1 454 9.9E-103 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDG55_01595 8536cb44e1e2e6f5efb62e0c8246fee6 455 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 424 4.3E-74 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDG55_01595 8536cb44e1e2e6f5efb62e0c8246fee6 455 Pfam PF01554 MatE 23 183 1.7E-35 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDG55_01595 8536cb44e1e2e6f5efb62e0c8246fee6 455 Pfam PF01554 MatE 252 413 2.1E-29 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 SUPERFAMILY SSF52540 327 598 1.8E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Gene3D G3DSA:1.10.8.60 504 598 1.6E-31 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 PIRSF PIRSF001174 7 789 0.0 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 365 501 6.0E-20 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 19 212 1.0E-27 T 13-10-2018 IPR003111 Lon, substrate-binding domain CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Gene3D G3DSA:3.40.50.300 326 503 1.2E-62 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 717 736 7.9E-50 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 687 706 7.9E-50 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 369 388 7.9E-50 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 609 625 7.9E-50 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 740 758 7.9E-50 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 584 786 3.5E-84 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Gene3D G3DSA:1.20.58.1480 133 256 7.1E-24 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Gene3D G3DSA:3.30.230.10 599 786 1.7E-73 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 SMART SM00464 19 214 3.4E-60 T 13-10-2018 IPR003111 Lon, substrate-binding domain CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 SMART SM00382 361 505 2.9E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 SUPERFAMILY SSF54211 609 784 1.14E-53 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Gene3D G3DSA:2.30.130.40 13 127 2.0E-27 T 13-10-2018 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 TIGRFAM TIGR00763 lon: endopeptidase La 21 784 1.3E-278 T 13-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 Hamap MF_01973 Lon protease [lon]. 20 786 66.393 T 13-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 CDG55_05820 3452ea35cfde8b7f978ece1670fd4bed 809 SUPERFAMILY SSF88697 19 212 1.64E-28 T 13-10-2018 IPR015947 PUA-like superfamily CDG55_09125 792c69c21ee3896a6e4984ff24d3a5b3 384 PIRSF PIRSF004925 1 384 1.3E-109 T 13-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter CDG55_09125 792c69c21ee3896a6e4984ff24d3a5b3 384 Gene3D G3DSA:1.20.1250.20 186 383 4.8E-35 T 13-10-2018 CDG55_09125 792c69c21ee3896a6e4984ff24d3a5b3 384 Gene3D G3DSA:1.20.1250.20 3 185 1.6E-24 T 13-10-2018 CDG55_09125 792c69c21ee3896a6e4984ff24d3a5b3 384 Pfam PF12832 MFS_1 like family 3 358 2.1E-85 T 13-10-2018 IPR024989 Major facilitator superfamily associated domain CDG55_09125 792c69c21ee3896a6e4984ff24d3a5b3 384 SUPERFAMILY SSF103473 6 377 5.62E-47 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_03060 95fc3e14552bf04a95d8bf380bee1246 290 Pfam PF13622 Thioesterase-like superfamily 33 282 4.5E-54 T 13-10-2018 CDG55_03060 95fc3e14552bf04a95d8bf380bee1246 290 SUPERFAMILY SSF54637 115 283 5.84E-48 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_03060 95fc3e14552bf04a95d8bf380bee1246 290 Gene3D G3DSA:3.10.129.90 2 287 2.0E-96 T 13-10-2018 CDG55_03060 95fc3e14552bf04a95d8bf380bee1246 290 SUPERFAMILY SSF54637 5 112 4.77E-35 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_03840 95bca40178be0cbf05596593a11a34cc 281 Gene3D G3DSA:3.40.50.620 1 178 4.2E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_03840 95bca40178be0cbf05596593a11a34cc 281 Gene3D G3DSA:3.30.1300.10 179 279 2.3E-27 T 13-10-2018 CDG55_03840 95bca40178be0cbf05596593a11a34cc 281 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 278 4.5E-97 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CDG55_03840 95bca40178be0cbf05596593a11a34cc 281 SUPERFAMILY SSF52374 1 279 3.75E-104 T 13-10-2018 CDG55_03840 95bca40178be0cbf05596593a11a34cc 281 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 26 68 2.2E-8 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDG55_03840 95bca40178be0cbf05596593a11a34cc 281 Hamap MF_00158 Pantothenate synthetase [panC]. 2 277 40.379 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CDG55_03840 95bca40178be0cbf05596593a11a34cc 281 Pfam PF02569 Pantoate-beta-alanine ligase 5 275 3.4E-104 T 13-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 CDG55_05575 616fb3a78b60650384346f81862e72df 267 Gene3D G3DSA:3.30.70.580 1 66 1.7E-17 T 13-10-2018 CDG55_05575 616fb3a78b60650384346f81862e72df 267 Gene3D G3DSA:3.30.70.1560 67 167 8.6E-38 T 13-10-2018 CDG55_05575 616fb3a78b60650384346f81862e72df 267 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 7 179 9.7E-44 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CDG55_05575 616fb3a78b60650384346f81862e72df 267 SUPERFAMILY SSF55120 3 191 8.48E-36 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_05575 616fb3a78b60650384346f81862e72df 267 Pfam PF00849 RNA pseudouridylate synthase 3 148 1.0E-9 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_11390 063049e8397edf6329f43f326a905493 724 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 707 1.0E-227 T 13-10-2018 IPR010020 Integral membrane protein, YccS/YhfK CDG55_11390 063049e8397edf6329f43f326a905493 724 Pfam PF12805 FUSC-like inner membrane protein yccS 70 349 7.4E-88 T 13-10-2018 IPR032692 Integral membrane protein YccS, N-terminal CDG55_11390 063049e8397edf6329f43f326a905493 724 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 12 707 2.7E-248 T 13-10-2018 IPR010019 Integral membrane protein, YccS CDG55_11390 063049e8397edf6329f43f326a905493 724 Pfam PF13515 Fusaric acid resistance protein-like 411 530 7.4E-19 T 13-10-2018 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 Pfam PF00210 Ferritin-like domain 8 143 4.7E-33 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 Gene3D G3DSA:1.20.1260.10 1 154 5.8E-59 T 13-10-2018 IPR012347 Ferritin-like CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 PRINTS PR00601 Bacterioferritin signature 65 85 1.4E-56 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 PRINTS PR00601 Bacterioferritin signature 23 43 1.4E-56 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 PRINTS PR00601 Bacterioferritin signature 3 22 1.4E-56 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 PRINTS PR00601 Bacterioferritin signature 128 149 1.4E-56 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 PRINTS PR00601 Bacterioferritin signature 44 64 1.4E-56 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 PRINTS PR00601 Bacterioferritin signature 86 106 1.4E-56 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 PRINTS PR00601 Bacterioferritin signature 107 127 1.4E-56 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 PIRSF PIRSF002560 1 154 3.6E-63 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 SUPERFAMILY SSF47240 1 154 7.45E-45 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_02655 2e69db38b28a32ab287cb5942423bc7c 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 1.3E-62 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 SUPERFAMILY SSF52096 6 307 4.8E-66 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 496 6.7E-61 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 SUPERFAMILY SSF48179 497 642 1.79E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 Gene3D G3DSA:3.40.50.720 315 498 1.7E-66 T 13-10-2018 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 206 2.8E-37 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 SUPERFAMILY SSF48179 626 716 4.76E-24 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 716 0.0 T 13-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 SUPERFAMILY SSF51735 314 497 4.12E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 Gene3D G3DSA:1.10.1040.50 499 711 9.3E-77 T 13-10-2018 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 Gene3D G3DSA:3.90.226.10 1 314 6.4E-97 T 13-10-2018 CDG55_13530 d2c59266335002ba48e4e43732b7239a 717 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 498 593 1.6E-22 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 242 361 6.3E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 SMART SM00387 241 364 1.2E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 Gene3D G3DSA:3.30.565.10 201 362 6.3E-37 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 Gene3D G3DSA:1.10.287.130 140 197 2.7E-15 T 13-10-2018 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 SMART SM00388 137 201 2.0E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 325 343 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 361 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 PRINTS PR00344 Bacterial sensor protein C-terminal signature 296 310 3.0E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 Pfam PF00989 PAS fold 8 100 1.8E-10 T 13-10-2018 IPR013767 PAS fold GO:0006355 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 Pfam PF00512 His Kinase A (phospho-acceptor) domain 139 194 4.4E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 Gene3D G3DSA:3.30.450.20 9 120 2.9E-16 T 13-10-2018 CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 SMART SM00091 7 75 4.3E-5 T 13-10-2018 IPR000014 PAS domain CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 SUPERFAMILY SSF55785 9 105 6.66E-9 T 13-10-2018 IPR035965 PAS domain superfamily CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 SUPERFAMILY SSF55874 203 362 1.05E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_08960 8196dc98830e38d35186e07c3d1390d3 369 SUPERFAMILY SSF47384 129 197 2.16E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 PRINTS PR00148 Enolase signature 367 384 2.7E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 PRINTS PR00148 Enolase signature 164 177 2.7E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 PRINTS PR00148 Enolase signature 37 51 2.7E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 PRINTS PR00148 Enolase signature 338 352 2.7E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 PRINTS PR00148 Enolase signature 107 123 2.7E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 PRINTS PR00148 Enolase signature 315 326 2.7E-43 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 SMART SM01192 142 427 4.8E-210 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 Hamap MF_00318 Enolase [eno]. 2 415 44.371 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 426 1.7E-202 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 SUPERFAMILY SSF51604 142 416 9.2E-125 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 Gene3D G3DSA:3.20.20.120 128 429 3.7E-132 T 13-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 Pfam PF03952 Enolase, N-terminal domain 4 134 1.2E-59 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 Gene3D G3DSA:3.30.390.10 1 127 1.7E-56 T 13-10-2018 IPR029017 Enolase-like, N-terminal CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 SUPERFAMILY SSF54826 4 137 1.57E-56 T 13-10-2018 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 PIRSF PIRSF001400 1 427 1.2E-191 T 13-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 SMART SM01193 4 134 1.3E-92 T 13-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_08495 0dbfb3d1cf49c45a94bf4a683b7854bd 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 425 1.3E-131 T 13-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_03775 27964b0b76da37f96e81eb16404b4abf 273 Gene3D G3DSA:3.30.420.10 7 215 2.0E-20 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_03775 27964b0b76da37f96e81eb16404b4abf 273 SUPERFAMILY SSF53098 5 223 6.7E-35 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_03775 27964b0b76da37f96e81eb16404b4abf 273 Pfam PF10108 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB 49 257 9.5E-77 T 13-10-2018 IPR019288 Predicted 3'-5' exonuclease, PolB-like CDG55_14825 fc178c0f09672508412eaabb9a2996ce 227 Gene3D G3DSA:1.10.287.460 25 86 2.8E-11 T 13-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 CDG55_14825 fc178c0f09672508412eaabb9a2996ce 227 SUPERFAMILY SSF54534 27 227 7.27E-58 T 13-10-2018 CDG55_14825 fc178c0f09672508412eaabb9a2996ce 227 Gene3D G3DSA:3.10.50.40 90 227 1.4E-53 T 13-10-2018 CDG55_14825 fc178c0f09672508412eaabb9a2996ce 227 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 15 129 5.3E-26 T 13-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 CDG55_14825 fc178c0f09672508412eaabb9a2996ce 227 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 136 224 3.1E-29 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CDG55_13150 f91a5c07b6e1f2594c6f1972fc2b69af 204 Pfam PF07681 DoxX 27 111 6.5E-21 T 13-10-2018 IPR032808 DoxX family CDG55_03915 9155b5b8cf9cf091b4f0fde7ea180373 326 Pfam PF01409 tRNA synthetases class II core domain (F) 91 325 9.0E-105 T 13-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 CDG55_03915 9155b5b8cf9cf091b4f0fde7ea180373 326 Gene3D G3DSA:3.30.930.10 7 326 3.8E-122 T 13-10-2018 CDG55_03915 9155b5b8cf9cf091b4f0fde7ea180373 326 SUPERFAMILY SSF55681 91 325 2.76E-82 T 13-10-2018 CDG55_03915 9155b5b8cf9cf091b4f0fde7ea180373 326 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 18 86 3.1E-20 T 13-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 CDG55_03915 9155b5b8cf9cf091b4f0fde7ea180373 326 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 7 325 47.44 T 13-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 CDG55_03915 9155b5b8cf9cf091b4f0fde7ea180373 326 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 325 2.6E-109 T 13-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 CDG55_03915 9155b5b8cf9cf091b4f0fde7ea180373 326 SUPERFAMILY SSF46589 11 98 3.5E-20 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CDG55_06590 d30e91edf9fc70bb0f67c7c1a1aa0bd4 338 SUPERFAMILY SSF102114 100 321 1.07E-18 T 13-10-2018 CDG55_06590 d30e91edf9fc70bb0f67c7c1a1aa0bd4 338 Pfam PF04055 Radical SAM superfamily 113 216 4.1E-8 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_06590 d30e91edf9fc70bb0f67c7c1a1aa0bd4 338 Gene3D G3DSA:3.20.20.70 47 331 9.7E-82 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_06590 d30e91edf9fc70bb0f67c7c1a1aa0bd4 338 TIGRFAM TIGR00238 TIGR00238: KamA family protein 7 325 7.8E-95 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase CDG55_06590 d30e91edf9fc70bb0f67c7c1a1aa0bd4 338 Pfam PF13353 4Fe-4S single cluster domain 112 173 1.9E-5 T 13-10-2018 CDG55_06590 d30e91edf9fc70bb0f67c7c1a1aa0bd4 338 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 11 332 1.0E-133 T 13-10-2018 IPR022462 Lysine-2,3-aminomutase-like CDG55_06590 d30e91edf9fc70bb0f67c7c1a1aa0bd4 338 PIRSF PIRSF004911 3 337 5.9E-105 T 13-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 SMART SM00436 154 242 2.6E-48 T 13-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Hamap MF_00952 DNA topoisomerase 1 [topA]. 22 749 54.883 T 13-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Gene3D G3DSA:2.20.25.10 823 879 3.1E-23 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Gene3D G3DSA:3.40.50.140 20 184 1.3E-65 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Gene3D G3DSA:1.10.290.10 300 424 8.7E-157 T 13-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Pfam PF01751 Toprim domain 24 163 4.6E-32 T 13-10-2018 IPR006171 TOPRIM domain CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 SUPERFAMILY SSF57783 759 821 2.04E-14 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 SUPERFAMILY SSF57783 716 756 4.76E-7 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Gene3D G3DSA:3.30.65.10 713 759 1.2E-7 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Gene3D G3DSA:3.30.65.10 760 822 1.5E-20 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Gene3D G3DSA:3.30.65.10 598 664 4.7E-6 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Gene3D G3DSA:2.70.20.10 234 492 8.7E-157 T 13-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Gene3D G3DSA:1.10.460.10 186 590 8.7E-157 T 13-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Pfam PF08272 Topoisomerase I zinc-ribbon-like 839 878 2.8E-17 T 13-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Pfam PF08272 Topoisomerase I zinc-ribbon-like 773 808 1.5E-10 T 13-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 SUPERFAMILY SSF57783 824 878 6.63E-18 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 SUPERFAMILY SSF57783 599 639 2.89E-10 T 13-10-2018 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 24 649 4.9E-243 T 13-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 SMART SM00437 292 546 1.2E-122 T 13-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 212 230 6.0E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 334 343 6.0E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 127 140 6.0E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 509 523 6.0E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 410 426 6.0E-37 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 SUPERFAMILY SSF56712 23 626 1.27E-198 T 13-10-2018 IPR023405 DNA topoisomerase, type IA, core domain CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 728 759 3.3E-6 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 614 639 1.4E-6 T 13-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 SMART SM00493 22 153 4.5E-28 T 13-10-2018 IPR006171 TOPRIM domain CDG55_12795 fe205d2fc587a59b15b4aa0700d43c43 879 Pfam PF01131 DNA topoisomerase 179 584 2.3E-125 T 13-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 CDG55_15090 a0a2b28f7428ab77ec7922ced25d2fea 410 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 252 400 1.1E-32 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_15090 a0a2b28f7428ab77ec7922ced25d2fea 410 SUPERFAMILY SSF56645 5 265 8.38E-63 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_15090 a0a2b28f7428ab77ec7922ced25d2fea 410 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 139 240 4.4E-18 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_15090 a0a2b28f7428ab77ec7922ced25d2fea 410 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 134 1.2E-15 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_15090 a0a2b28f7428ab77ec7922ced25d2fea 410 Gene3D G3DSA:1.20.140.10 253 407 1.2E-35 T 13-10-2018 CDG55_15090 a0a2b28f7428ab77ec7922ced25d2fea 410 Gene3D G3DSA:1.10.540.10 1 136 1.6E-50 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_15090 a0a2b28f7428ab77ec7922ced25d2fea 410 SUPERFAMILY SSF47203 251 405 3.7E-39 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_15090 a0a2b28f7428ab77ec7922ced25d2fea 410 Gene3D G3DSA:2.40.110.10 137 252 4.7E-42 T 13-10-2018 CDG55_06785 a7b0881a2e7ef493f9db4f1315ef9c2b 432 Pfam PF00158 Sigma-54 interaction domain 126 290 1.4E-66 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDG55_06785 a7b0881a2e7ef493f9db4f1315ef9c2b 432 SMART SM00382 144 287 2.0E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_06785 a7b0881a2e7ef493f9db4f1315ef9c2b 432 Gene3D G3DSA:3.40.50.300 110 295 5.1E-62 T 13-10-2018 CDG55_06785 a7b0881a2e7ef493f9db4f1315ef9c2b 432 Gene3D G3DSA:1.10.8.60 296 372 4.5E-20 T 13-10-2018 CDG55_06785 a7b0881a2e7ef493f9db4f1315ef9c2b 432 Pfam PF02954 Bacterial regulatory protein, Fis family 393 430 1.3E-6 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_06785 a7b0881a2e7ef493f9db4f1315ef9c2b 432 Gene3D G3DSA:1.10.10.60 391 432 1.3E-9 T 13-10-2018 CDG55_06785 a7b0881a2e7ef493f9db4f1315ef9c2b 432 SUPERFAMILY SSF46689 336 431 1.47E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_06785 a7b0881a2e7ef493f9db4f1315ef9c2b 432 SUPERFAMILY SSF52540 127 367 2.54E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_02035 391a113a5b272ee4f7ade0e57f24a38b 371 Pfam PF13784 Fic/DOC family N-terminal 28 109 6.9E-22 T 13-10-2018 IPR025758 Fic/DOC N-terminal CDG55_02035 391a113a5b272ee4f7ade0e57f24a38b 371 PIRSF PIRSF038925 1 361 1.5E-110 T 13-10-2018 IPR026287 Adenosine monophosphate-protein transferase CDG55_02035 391a113a5b272ee4f7ade0e57f24a38b 371 SUPERFAMILY SSF140931 148 281 3.27E-30 T 13-10-2018 IPR036597 Fido-like domain superfamily CDG55_02035 391a113a5b272ee4f7ade0e57f24a38b 371 Pfam PF02661 Fic/DOC family 148 214 1.4E-16 T 13-10-2018 IPR003812 Fido domain CDG55_02035 391a113a5b272ee4f7ade0e57f24a38b 371 Gene3D G3DSA:1.10.3290.10 42 286 9.0E-35 T 13-10-2018 IPR036597 Fido-like domain superfamily CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 SUPERFAMILY SSF55315 3 78 5.89E-17 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 SMART SM00967 6 82 4.1E-16 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 SUPERFAMILY SSF75217 70 247 1.77E-46 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 4 247 38.3 T 13-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 Gene3D G3DSA:3.30.1330.30 1 78 7.0E-24 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 5 246 3.1E-66 T 13-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 Gene3D G3DSA:3.40.1280.10 81 247 3.6E-53 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 6 80 1.5E-17 T 13-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 CDG55_13420 83a17c0c3fc505006c42ce86efa2719c 249 Pfam PF00588 SpoU rRNA Methylase family 98 240 5.9E-39 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDG55_06245 a88ffdb30fa65ad0dfe81e425c8b50ac 443 SMART SM01091 349 429 1.3E-26 T 13-10-2018 IPR005170 Transporter-associated domain CDG55_06245 a88ffdb30fa65ad0dfe81e425c8b50ac 443 Pfam PF00571 CBS domain 288 331 1.1E-4 T 13-10-2018 IPR000644 CBS domain CDG55_06245 a88ffdb30fa65ad0dfe81e425c8b50ac 443 Pfam PF03471 Transporter associated domain 350 427 3.1E-21 T 13-10-2018 IPR005170 Transporter-associated domain CDG55_06245 a88ffdb30fa65ad0dfe81e425c8b50ac 443 Gene3D G3DSA:3.10.580.10 195 349 7.6E-34 T 13-10-2018 CDG55_06245 a88ffdb30fa65ad0dfe81e425c8b50ac 443 SUPERFAMILY SSF56176 347 435 9.82E-22 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CDG55_06245 a88ffdb30fa65ad0dfe81e425c8b50ac 443 Gene3D G3DSA:3.30.465.10 350 429 1.2E-29 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CDG55_06245 a88ffdb30fa65ad0dfe81e425c8b50ac 443 Pfam PF01595 Domain of unknown function DUF21 8 199 1.0E-34 T 13-10-2018 IPR002550 CNNM, transmembrane domain CDG55_06245 a88ffdb30fa65ad0dfe81e425c8b50ac 443 SUPERFAMILY SSF54631 201 336 3.89E-22 T 13-10-2018 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 21 323 7.0E-91 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 SUPERFAMILY SSF53671 20 324 7.86E-93 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 Gene3D G3DSA:3.40.50.1370 152 310 5.7E-90 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 304 318 3.8E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 239 248 3.8E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 151 168 3.8E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 94 103 3.8E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 56 78 3.8E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00101 Aspartate carbamoyltransferase signature 280 285 3.8E-29 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 152 163 7.1E-20 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 288 311 7.1E-20 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 66 85 7.1E-20 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 276 285 7.1E-20 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 Gene3D G3DSA:3.40.50.1370 21 321 5.7E-90 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 21 164 2.3E-40 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 20 325 40.148 T 13-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_07485 d9de1bbd037789008fe4ef9531030cc1 338 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 173 321 6.5E-28 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 SUPERFAMILY SSF82693 562 668 1.73E-18 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 SUPERFAMILY SSF82693 669 844 7.85E-12 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 364 385 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 37 55 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 392 416 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 446 469 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 471 494 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 337 360 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 549 566 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 618 632 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 PRINTS PR00702 Acriflavin resistance protein family signature 9 33 3.1E-98 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 SUPERFAMILY SSF82693 39 131 6.28E-26 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Gene3D G3DSA:3.30.2090.10 180 276 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 SUPERFAMILY SSF82866 297 498 4.97E-49 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 2 1030 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Pfam PF00873 AcrB/AcrD/AcrF family 3 1021 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 SUPERFAMILY SSF82714 183 273 2.09E-21 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Gene3D G3DSA:3.30.70.1440 666 861 0.0 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Gene3D G3DSA:3.30.70.1320 134 333 0.0 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Gene3D G3DSA:1.20.1640.10 510 1018 0.0 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Gene3D G3DSA:3.30.2090.10 718 806 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 SUPERFAMILY SSF82714 721 804 5.89E-18 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Gene3D G3DSA:3.30.70.1430 39 814 0.0 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 SUPERFAMILY SSF82866 829 1020 3.92E-37 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 SUPERFAMILY SSF82693 137 331 3.14E-22 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Gene3D G3DSA:3.30.70.1430 564 665 0.0 T 13-10-2018 CDG55_10750 3b825b6197fe8a76b3111755420fce35 1035 Gene3D G3DSA:1.20.1640.10 9 509 0.0 T 13-10-2018 CDG55_09685 6814d511d86bf598670924469fb00807 663 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 5 649 0.0 T 13-10-2018 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 CDG55_09685 6814d511d86bf598670924469fb00807 663 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 58 506 5.1E-137 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 Gene3D G3DSA:1.20.210.10 32 564 1.0E-187 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 SUPERFAMILY SSF81442 45 560 2.75E-176 T 13-10-2018 IPR036927 Cytochrome c oxidase-like, subunit I superfamily GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 413 432 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 126 150 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 280 301 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 168 180 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 200 218 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 350 371 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 99 122 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 385 403 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 229 248 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 326 341 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 49 74 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09685 6814d511d86bf598670924469fb00807 663 PRINTS PR01165 Cytochrome c oxidase subunit I signature 463 484 1.5E-95 T 13-10-2018 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_02240 7a53b2d0ffa26f34219a9d933e5cc295 297 SUPERFAMILY SSF103481 187 283 7.45E-9 T 13-10-2018 CDG55_02240 7a53b2d0ffa26f34219a9d933e5cc295 297 Pfam PF00892 EamA-like transporter family 152 282 6.6E-11 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_02240 7a53b2d0ffa26f34219a9d933e5cc295 297 Pfam PF00892 EamA-like transporter family 13 140 1.3E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_02240 7a53b2d0ffa26f34219a9d933e5cc295 297 SUPERFAMILY SSF103481 45 142 6.02E-11 T 13-10-2018 CDG55_12105 da71b21c28bea34631601eb3076ce1cf 183 SMART SM00014 64 173 1.1E-16 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDG55_12105 da71b21c28bea34631601eb3076ce1cf 183 Pfam PF01569 PAP2 superfamily 66 176 1.4E-21 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDG55_12105 da71b21c28bea34631601eb3076ce1cf 183 SUPERFAMILY SSF48317 7 174 7.19E-39 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CDG55_12105 da71b21c28bea34631601eb3076ce1cf 183 Gene3D G3DSA:1.20.144.10 58 180 1.8E-17 T 13-10-2018 CDG55_04610 f59bfb197c818f683ba41b9edd57a1cf 351 SUPERFAMILY SSF51735 3 341 9.65E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_04610 f59bfb197c818f683ba41b9edd57a1cf 351 Pfam PF01370 NAD dependent epimerase/dehydratase family 7 254 1.9E-30 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CDG55_04610 f59bfb197c818f683ba41b9edd57a1cf 351 Gene3D G3DSA:3.40.50.720 2 349 1.7E-93 T 13-10-2018 CDG55_06485 0f5fdfcf15dbeee42558664c54234dc0 328 Pfam PF02371 Transposase IS116/IS110/IS902 family 201 286 2.3E-18 T 13-10-2018 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 CDG55_06485 0f5fdfcf15dbeee42558664c54234dc0 328 Pfam PF01548 Transposase 4 154 9.1E-26 T 13-10-2018 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 CDG55_03700 7feed54df957642e12c3c0f1e942302f 139 SUPERFAMILY SSF55298 9 137 6.23E-20 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CDG55_03700 7feed54df957642e12c3c0f1e942302f 139 Gene3D G3DSA:3.30.1330.40 8 138 6.1E-20 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CDG55_03700 7feed54df957642e12c3c0f1e942302f 139 Pfam PF01042 Endoribonuclease L-PSP 23 137 1.5E-17 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CDG55_11065 1784d641d92f1496af2ee7d339e0ecea 420 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 69 298 1.6E-16 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDG55_11065 1784d641d92f1496af2ee7d339e0ecea 420 Gene3D G3DSA:1.10.287.470 105 178 1.3E-101 T 13-10-2018 CDG55_11065 1784d641d92f1496af2ee7d339e0ecea 420 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 380 1.7E-76 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CDG55_11065 1784d641d92f1496af2ee7d339e0ecea 420 Gene3D G3DSA:2.40.420.20 309 378 1.3E-101 T 13-10-2018 CDG55_11065 1784d641d92f1496af2ee7d339e0ecea 420 Gene3D G3DSA:2.40.30.170 57 308 1.3E-101 T 13-10-2018 CDG55_11065 1784d641d92f1496af2ee7d339e0ecea 420 Gene3D G3DSA:2.40.50.100 70 214 1.3E-101 T 13-10-2018 CDG55_11065 1784d641d92f1496af2ee7d339e0ecea 420 SUPERFAMILY SSF111369 59 303 8.11E-78 T 13-10-2018 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 427 6.5E-158 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PIRSF PIRSF000099 2 429 5.9E-155 T 13-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 Gene3D G3DSA:3.40.50.1980 234 350 1.1E-121 T 13-10-2018 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 SUPERFAMILY SSF53720 27 428 1.0E-86 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 5 428 40.02 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 Pfam PF00815 Histidinol dehydrogenase 25 427 6.4E-165 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PRINTS PR00083 Histidinol dehydrogenase signature 201 226 4.7E-76 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PRINTS PR00083 Histidinol dehydrogenase signature 230 251 4.7E-76 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PRINTS PR00083 Histidinol dehydrogenase signature 171 197 4.7E-76 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PRINTS PR00083 Histidinol dehydrogenase signature 321 346 4.7E-76 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PRINTS PR00083 Histidinol dehydrogenase signature 362 380 4.7E-76 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 4.7E-76 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PRINTS PR00083 Histidinol dehydrogenase signature 137 163 4.7E-76 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 PRINTS PR00083 Histidinol dehydrogenase signature 252 271 4.7E-76 T 13-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 CDG55_04085 cdedb564488263b02c27c55c1a1600e1 429 Gene3D G3DSA:3.40.50.1980 31 232 1.1E-121 T 13-10-2018 CDG55_03530 0331e730c6b0fa047c24f38394f9ba64 336 Gene3D G3DSA:3.60.21.10 115 312 1.9E-18 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CDG55_03530 0331e730c6b0fa047c24f38394f9ba64 336 Pfam PF00149 Calcineurin-like phosphoesterase 116 273 2.8E-12 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CDG55_03530 0331e730c6b0fa047c24f38394f9ba64 336 SUPERFAMILY SSF56300 116 335 2.13E-30 T 13-10-2018 CDG55_05835 5cc5409463be04cce4064aad5efe1aa9 126 SMART SM00422 3 71 2.9E-21 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05835 5cc5409463be04cce4064aad5efe1aa9 126 SUPERFAMILY SSF46955 3 124 9.89E-27 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_05835 5cc5409463be04cce4064aad5efe1aa9 126 Pfam PF13411 MerR HTH family regulatory protein 4 68 3.8E-17 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05835 5cc5409463be04cce4064aad5efe1aa9 126 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 9.8E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05835 5cc5409463be04cce4064aad5efe1aa9 126 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 9.8E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05835 5cc5409463be04cce4064aad5efe1aa9 126 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 9.8E-14 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05835 5cc5409463be04cce4064aad5efe1aa9 126 Gene3D G3DSA:1.10.1660.10 1 122 6.0E-30 T 13-10-2018 CDG55_14695 6261a3245f25a3abd27ef5c514e29f15 236 SUPERFAMILY SSF46785 12 106 9.71E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_14695 6261a3245f25a3abd27ef5c514e29f15 236 SUPERFAMILY SSF48008 86 223 3.4E-25 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CDG55_14695 6261a3245f25a3abd27ef5c514e29f15 236 SMART SM00895 90 217 3.1E-21 T 13-10-2018 IPR011711 GntR, C-terminal CDG55_14695 6261a3245f25a3abd27ef5c514e29f15 236 Pfam PF07729 FCD domain 90 216 1.1E-24 T 13-10-2018 IPR011711 GntR, C-terminal CDG55_14695 6261a3245f25a3abd27ef5c514e29f15 236 SMART SM00345 22 80 3.9E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_14695 6261a3245f25a3abd27ef5c514e29f15 236 Gene3D G3DSA:1.20.120.530 84 227 7.8E-30 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CDG55_14695 6261a3245f25a3abd27ef5c514e29f15 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 6.3E-14 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_14695 6261a3245f25a3abd27ef5c514e29f15 236 Gene3D G3DSA:1.10.10.10 13 81 1.2E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 491 4.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 536 4.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 477 4.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 516 4.1E-11 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 SUPERFAMILY SSF55874 372 537 9.95E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 SMART SM00387 427 539 3.5E-33 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 SUPERFAMILY SSF158472 269 316 1.02E-7 T 13-10-2018 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 Pfam PF00512 His Kinase A (phospho-acceptor) domain 319 383 2.2E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 Gene3D G3DSA:3.30.565.10 391 545 2.2E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 Pfam PF00672 HAMP domain 269 314 4.3E-8 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 SMART SM00304 265 317 1.3E-9 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 SUPERFAMILY SSF47384 301 383 6.47E-16 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 430 537 3.1E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 Gene3D G3DSA:1.10.287.130 269 384 1.2E-25 T 13-10-2018 CDG55_04305 52eeabe24b7b960c8a4cba4cb40da2f0 546 SMART SM00388 318 383 6.3E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_08670 c7730b812ba58fcf4d1286a7d6c11487 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 2 105 7.2E-23 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDG55_08670 c7730b812ba58fcf4d1286a7d6c11487 109 PIRSF PIRSF004555 1 109 7.6E-30 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDG55_08670 c7730b812ba58fcf4d1286a7d6c11487 109 SUPERFAMILY SSF82607 7 103 1.31E-27 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CDG55_08670 c7730b812ba58fcf4d1286a7d6c11487 109 Pfam PF02575 YbaB/EbfC DNA-binding family 7 99 2.8E-28 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDG55_08670 c7730b812ba58fcf4d1286a7d6c11487 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 1 98 20.453 T 13-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family CDG55_08670 c7730b812ba58fcf4d1286a7d6c11487 109 Gene3D G3DSA:3.30.1310.10 1 109 2.1E-33 T 13-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CDG55_14735 d8e1a198e1b8d6cbda88de826d8db0c6 177 Gene3D G3DSA:3.40.50.20 3 93 2.0E-21 T 13-10-2018 CDG55_14735 d8e1a198e1b8d6cbda88de826d8db0c6 177 SUPERFAMILY SSF51161 5 176 1.52E-23 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_14735 d8e1a198e1b8d6cbda88de826d8db0c6 177 Gene3D G3DSA:2.160.10.10 95 177 5.3E-12 T 13-10-2018 CDG55_14735 d8e1a198e1b8d6cbda88de826d8db0c6 177 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 100 122 0.0011 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 2.0E-21 T 13-10-2018 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 5.6E-39 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 5.6E-39 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 5.6E-39 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 Pfam PF00453 Ribosomal protein L20 3 109 7.7E-46 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 2.2E-46 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 29.347 T 13-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 SUPERFAMILY SSF74731 3 117 2.75E-47 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 Gene3D G3DSA:1.10.1900.20 56 118 9.4E-25 T 13-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03900 a01b0a3cf891c89ddbd0e0566aa5f1cf 119 Gene3D G3DSA:1.10.720.90 2 55 3.9E-24 T 13-10-2018 CDG55_11010 34e1f4674b55ad50fd563a7ceb598a5e 156 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 154 30.574 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 CDG55_11010 34e1f4674b55ad50fd563a7ceb598a5e 156 Pfam PF00588 SpoU rRNA Methylase family 2 145 1.8E-34 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDG55_11010 34e1f4674b55ad50fd563a7ceb598a5e 156 PIRSF PIRSF029256 1 156 2.2E-60 T 13-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 CDG55_11010 34e1f4674b55ad50fd563a7ceb598a5e 156 SUPERFAMILY SSF75217 2 155 1.96E-42 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CDG55_11010 34e1f4674b55ad50fd563a7ceb598a5e 156 Gene3D G3DSA:3.40.1280.10 1 156 1.1E-58 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 Gene3D G3DSA:1.10.1660.10 4 131 2.0E-32 T 13-10-2018 CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 SMART SM00422 8 77 1.7E-30 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 Pfam PF00376 MerR family regulatory protein 9 46 1.1E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 SUPERFAMILY SSF46955 8 129 1.5E-29 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 Pfam PF09278 MerR, DNA binding 51 113 4.3E-18 T 13-10-2018 IPR015358 Transcription regulator MerR, DNA binding CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 TIGRFAM TIGR02051 MerR: Hg(II)-responsive transcriptional regulator 9 132 9.3E-56 T 13-10-2018 IPR011794 Hg(II)-responsive transcriptional regulator GO:0003677|GO:0006355|GO:0045340|GO:0046689 CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 3.9E-26 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 9 20 3.9E-26 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01115 5204afaa252b7d9f88291a91da04c2e3 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 20 33 3.9E-26 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05580 a144cea4856a18149c109359915131dd 418 SMART SM01329 30 412 2.4E-175 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDG55_05580 a144cea4856a18149c109359915131dd 418 SUPERFAMILY SSF53659 4 416 2.3E-140 T 13-10-2018 CDG55_05580 a144cea4856a18149c109359915131dd 418 Gene3D G3DSA:3.40.718.10 1 417 3.7E-179 T 13-10-2018 CDG55_05580 a144cea4856a18149c109359915131dd 418 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 31 412 1.4E-110 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDG55_05580 a144cea4856a18149c109359915131dd 418 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 417 3.8E-217 T 13-10-2018 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 Gene3D G3DSA:3.30.70.2740 341 426 5.1E-27 T 13-10-2018 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 SUPERFAMILY SSF55103 226 468 2.94E-61 T 13-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 Pfam PF01565 FAD binding domain 46 184 6.2E-39 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 Gene3D G3DSA:3.30.43.10 1 97 8.6E-26 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 Gene3D G3DSA:1.10.45.10 427 466 1.1E-14 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 Pfam PF02913 FAD linked oxidases, C-terminal domain 222 466 1.2E-61 T 13-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 Gene3D G3DSA:3.30.70.2190 222 338 6.6E-27 T 13-10-2018 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 SUPERFAMILY SSF56176 4 222 2.94E-66 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CDG55_02790 2fa96082c139d4a653590a6ffe2b9aaa 469 Gene3D G3DSA:3.30.465.10 100 220 5.7E-39 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CDG55_12995 d636c2bdd22608c50698c3ae16a0f651 1142 Pfam PF10150 Ribonuclease E/G family 139 408 1.4E-93 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 CDG55_12995 d636c2bdd22608c50698c3ae16a0f651 1142 SUPERFAMILY SSF50249 60 143 9.0E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_12995 d636c2bdd22608c50698c3ae16a0f651 1142 Hamap MF_00970 Ribonuclease E [rne]. 21 1131 33.822 T 13-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 CDG55_12995 d636c2bdd22608c50698c3ae16a0f651 1142 Gene3D G3DSA:2.40.50.140 51 143 2.4E-28 T 13-10-2018 CDG55_12995 d636c2bdd22608c50698c3ae16a0f651 1142 SMART SM00316 57 137 7.2E-8 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_12995 d636c2bdd22608c50698c3ae16a0f651 1142 Pfam PF00575 S1 RNA binding domain 56 136 2.2E-9 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_12995 d636c2bdd22608c50698c3ae16a0f651 1142 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 33 442 2.8E-158 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 CDG55_12995 d636c2bdd22608c50698c3ae16a0f651 1142 Gene3D G3DSA:3.40.1260.20 419 523 5.9E-31 T 13-10-2018 CDG55_10900 934892420c1bf1fa11aa4874f5765c5d 236 Gene3D G3DSA:3.10.20.30 1 105 6.6E-35 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_10900 934892420c1bf1fa11aa4874f5765c5d 236 SUPERFAMILY SSF54292 3 105 4.2E-27 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CDG55_10900 934892420c1bf1fa11aa4874f5765c5d 236 Pfam PF13534 4Fe-4S dicluster domain 146 219 5.7E-9 T 13-10-2018 CDG55_10900 934892420c1bf1fa11aa4874f5765c5d 236 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 7 110 2.6E-30 T 13-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10900 934892420c1bf1fa11aa4874f5765c5d 236 Gene3D G3DSA:1.10.1060.10 106 235 1.1E-55 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CDG55_10900 934892420c1bf1fa11aa4874f5765c5d 236 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 10 228 8.2E-83 T 13-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10900 934892420c1bf1fa11aa4874f5765c5d 236 SUPERFAMILY SSF46548 106 233 1.26E-36 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CDG55_05300 4b76e65637a9e1ef2d8c2d5e512844ac 173 Gene3D G3DSA:3.10.129.10 5 162 7.1E-58 T 13-10-2018 CDG55_05300 4b76e65637a9e1ef2d8c2d5e512844ac 173 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 9 103 2.0E-10 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 CDG55_05300 4b76e65637a9e1ef2d8c2d5e512844ac 173 Pfam PF03061 Thioesterase superfamily 32 103 2.6E-18 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CDG55_05300 4b76e65637a9e1ef2d8c2d5e512844ac 173 SUPERFAMILY SSF54637 12 157 6.2E-45 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_05045 8e90b0ba655a6efac8dbe90dfd019232 294 PIRSF PIRSF007580 2 293 3.3E-73 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 CDG55_05045 8e90b0ba655a6efac8dbe90dfd019232 294 Pfam PF10118 Predicted metal-dependent hydrolase 17 277 2.1E-78 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 445 462 4.6E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 462 482 4.6E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 SUPERFAMILY SSF52540 141 385 6.46E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 Gene3D G3DSA:3.40.50.300 127 313 1.4E-67 T 13-10-2018 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 Gene3D G3DSA:1.10.8.60 315 386 3.2E-18 T 13-10-2018 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 Pfam PF00072 Response regulator receiver domain 6 115 1.0E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 Gene3D G3DSA:3.40.50.2300 1 124 1.8E-39 T 13-10-2018 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 SMART SM00448 4 115 4.9E-35 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 Pfam PF02954 Bacterial regulatory protein, Fis family 441 479 3.9E-14 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 SMART SM00382 162 305 1.7E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 479 2.0E-225 T 13-10-2018 IPR010114 DNA-binding transcriptional regulator NtrC GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 SUPERFAMILY SSF52172 3 187 8.68E-44 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 SUPERFAMILY SSF46689 404 482 4.78E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 Gene3D G3DSA:1.10.10.60 387 482 6.8E-23 T 13-10-2018 CDG55_08965 3627dec7b4e9c7da7f0601e164be5729 495 Pfam PF00158 Sigma-54 interaction domain 142 309 1.7E-71 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 406 51.817 T 13-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 1.4E-15 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 Hamap MF_01262 CCA-adding enzyme [cca]. 1 400 40.058 T 13-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 SUPERFAMILY SSF81301 1 119 9.48E-32 T 13-10-2018 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 Gene3D G3DSA:1.10.3090.10 122 409 1.4E-43 T 13-10-2018 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 PIRSF PIRSF000813 1 407 3.3E-188 T 13-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 Pfam PF01966 HD domain 231 309 1.1E-4 T 13-10-2018 IPR006674 HD domain CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 Gene3D G3DSA:3.30.460.10 1 121 4.1E-31 T 13-10-2018 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 SUPERFAMILY SSF81891 120 361 2.22E-54 T 13-10-2018 CDG55_09980 3f2ff326b090d1ad6c0f532bb74588c6 410 Pfam PF01743 Poly A polymerase head domain 3 122 2.5E-20 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CDG55_08790 6972775a8a6e41e6d439dcce7393cc20 356 Pfam PF02277 Phosphoribosyltransferase 12 349 4.8E-125 T 13-10-2018 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CDG55_08790 6972775a8a6e41e6d439dcce7393cc20 356 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 16 349 2.0E-126 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CDG55_08790 6972775a8a6e41e6d439dcce7393cc20 356 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 14 351 34.042 T 13-10-2018 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CDG55_08790 6972775a8a6e41e6d439dcce7393cc20 356 Gene3D G3DSA:1.10.1610.10 26 349 8.0E-122 T 13-10-2018 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CDG55_08790 6972775a8a6e41e6d439dcce7393cc20 356 Gene3D G3DSA:3.40.50.10210 58 332 8.0E-122 T 13-10-2018 CDG55_08790 6972775a8a6e41e6d439dcce7393cc20 356 SUPERFAMILY SSF52733 6 350 8.11E-110 T 13-10-2018 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 10 200 44.195 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 Gene3D G3DSA:3.90.226.10 3 201 1.6E-83 T 13-10-2018 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 PRINTS PR00127 Clp protease catalytic subunit P signature 118 137 3.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 PRINTS PR00127 Clp protease catalytic subunit P signature 66 86 3.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 PRINTS PR00127 Clp protease catalytic subunit P signature 97 114 3.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 PRINTS PR00127 Clp protease catalytic subunit P signature 175 194 3.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 PRINTS PR00127 Clp protease catalytic subunit P signature 26 41 3.0E-51 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 Pfam PF00574 Clp protease 20 199 7.3E-89 T 13-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 9 199 1.1E-106 T 13-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 CDG55_03435 4127f70b2cc1cdebb757b224b68ab4b1 201 SUPERFAMILY SSF52096 18 199 2.62E-75 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Pfam PF00623 RNA polymerase Rpb1, domain 2 349 389 1.3E-7 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 490 8.4E-27 T 13-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Gene3D G3DSA:1.10.40.90 379 421 2.5E-20 T 13-10-2018 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1373 19.091 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Gene3D G3DSA:1.10.132.30 646 795 1.8E-66 T 13-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Pfam PF04998 RNA polymerase Rpb1, domain 5 771 1312 2.7E-77 T 13-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 25 1362 0.0 T 13-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Pfam PF04983 RNA polymerase Rpb1, domain 3 494 649 6.4E-30 T 13-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Gene3D G3DSA:2.40.50.100 1028 1122 1.1E-18 T 13-10-2018 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Gene3D G3DSA:2.40.50.100 953 1027 1.1E-26 T 13-10-2018 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Gene3D G3DSA:2.40.50.100 1147 1211 2.2E-64 T 13-10-2018 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Pfam PF04997 RNA polymerase Rpb1, domain 1 21 347 3.8E-88 T 13-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Gene3D G3DSA:1.10.150.390 1312 1372 3.3E-27 T 13-10-2018 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Pfam PF05000 RNA polymerase Rpb1, domain 4 679 768 1.5E-19 T 13-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 SMART SM00663 240 519 3.5E-177 T 13-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 SUPERFAMILY SSF64484 21 1361 0.0 T 13-10-2018 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Gene3D G3DSA:1.10.274.100 495 645 1.0E-41 T 13-10-2018 CDG55_13655 36e2afbff7690f666ce5f72d2048e190 1397 Gene3D G3DSA:1.10.1790.20 1131 1310 2.2E-64 T 13-10-2018 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 SUPERFAMILY SSF63411 21 246 2.0E-43 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 Pfam PF05193 Peptidase M16 inactive domain 208 391 2.6E-9 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 SMART SM01264 466 715 1.2E-75 T 13-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 Pfam PF00675 Insulinase (Peptidase family M16) 63 168 1.9E-8 T 13-10-2018 IPR011765 Peptidase M16, N-terminal CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 Gene3D G3DSA:3.30.830.10 3 254 2.9E-84 T 13-10-2018 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 SUPERFAMILY SSF63411 522 774 3.67E-52 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 Gene3D G3DSA:3.30.830.10 530 787 8.6E-110 T 13-10-2018 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 Pfam PF08367 Peptidase M16C associated 466 715 4.0E-56 T 13-10-2018 IPR013578 Peptidase M16C associated GO:0006508 Reactome: R-HSA-1268020 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 Gene3D G3DSA:3.30.830.10 499 949 8.6E-110 T 13-10-2018 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 SUPERFAMILY SSF63411 261 523 9.43E-55 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 SUPERFAMILY SSF63411 791 977 1.02E-36 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDG55_08345 c890037ddedcef434ef2d9a6466d5cd6 979 Gene3D G3DSA:3.30.830.10 260 488 1.0E-56 T 13-10-2018 CDG55_12200 1c54f3bb4ee5a0aea2ab3503308a0107 537 Gene3D G3DSA:3.90.226.10 1 271 4.1E-69 T 13-10-2018 CDG55_12200 1c54f3bb4ee5a0aea2ab3503308a0107 537 SUPERFAMILY SSF52096 39 269 1.29E-57 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_12200 1c54f3bb4ee5a0aea2ab3503308a0107 537 Gene3D G3DSA:3.90.226.10 272 537 5.7E-88 T 13-10-2018 CDG55_12200 1c54f3bb4ee5a0aea2ab3503308a0107 537 Pfam PF01039 Carboxyl transferase domain 49 524 9.9E-120 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 CDG55_12200 1c54f3bb4ee5a0aea2ab3503308a0107 537 SUPERFAMILY SSF52096 236 516 3.14E-73 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_10275 c29fc7d9083153ab685518ef1021acc4 189 Gene3D G3DSA:3.30.1330.60 69 182 1.1E-40 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_10275 c29fc7d9083153ab685518ef1021acc4 189 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 1 181 29.406 T 13-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 CDG55_10275 c29fc7d9083153ab685518ef1021acc4 189 SUPERFAMILY SSF103088 69 179 9.81E-35 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_10275 c29fc7d9083153ab685518ef1021acc4 189 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 79 181 8.7E-43 T 13-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 CDG55_10275 c29fc7d9083153ab685518ef1021acc4 189 PRINTS PR01021 OMPA domain signature 111 126 8.2E-17 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_10275 c29fc7d9083153ab685518ef1021acc4 189 PRINTS PR01021 OMPA domain signature 81 103 8.2E-17 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_10275 c29fc7d9083153ab685518ef1021acc4 189 PRINTS PR01021 OMPA domain signature 126 142 8.2E-17 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_10275 c29fc7d9083153ab685518ef1021acc4 189 Pfam PF00691 OmpA family 81 175 1.2E-20 T 13-10-2018 IPR006665 OmpA-like domain CDG55_12690 626d3c202950505f8177757916ae8ee6 575 Gene3D G3DSA:3.40.50.970 1 182 1.3E-72 T 13-10-2018 CDG55_12690 626d3c202950505f8177757916ae8ee6 575 SUPERFAMILY SSF52518 4 179 2.02E-63 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_12690 626d3c202950505f8177757916ae8ee6 575 SUPERFAMILY SSF52467 190 362 7.51E-64 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CDG55_12690 626d3c202950505f8177757916ae8ee6 575 SUPERFAMILY SSF52518 373 569 4.27E-67 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_12690 626d3c202950505f8177757916ae8ee6 575 Gene3D G3DSA:3.40.50.1220 191 362 5.8E-60 T 13-10-2018 CDG55_12690 626d3c202950505f8177757916ae8ee6 575 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 568 1.0E-251 T 13-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 CDG55_12690 626d3c202950505f8177757916ae8ee6 575 Gene3D G3DSA:3.40.50.970 365 574 2.3E-64 T 13-10-2018 CDG55_12690 626d3c202950505f8177757916ae8ee6 575 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 545 1.1E-46 T 13-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 CDG55_12690 626d3c202950505f8177757916ae8ee6 575 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.9E-42 T 13-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 CDG55_12690 626d3c202950505f8177757916ae8ee6 575 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 166 1.0E-58 T 13-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 CDG55_07195 4b2fd78cd96f1a0ddc9c144b05e4f519 192 Pfam PF00881 Nitroreductase family 13 168 4.1E-23 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CDG55_07195 4b2fd78cd96f1a0ddc9c144b05e4f519 192 PIRSF PIRSF000232 4 192 1.6E-62 T 13-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like CDG55_07195 4b2fd78cd96f1a0ddc9c144b05e4f519 192 Gene3D G3DSA:3.40.109.10 8 187 7.8E-36 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDG55_07195 4b2fd78cd96f1a0ddc9c144b05e4f519 192 SUPERFAMILY SSF55469 6 180 2.62E-30 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDG55_10985 f09be011f2133cb759da29a7dd735777 394 SUPERFAMILY SSF56796 5 394 2.09E-111 T 13-10-2018 CDG55_10985 f09be011f2133cb759da29a7dd735777 394 Gene3D G3DSA:3.40.50.1970 1 188 9.8E-57 T 13-10-2018 CDG55_10985 f09be011f2133cb759da29a7dd735777 394 Gene3D G3DSA:1.20.1090.10 190 394 5.7E-59 T 13-10-2018 CDG55_10985 f09be011f2133cb759da29a7dd735777 394 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 386 4.8E-109 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Gene3D G3DSA:1.20.1640.10 511 1025 2.9E-281 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Gene3D G3DSA:3.30.2090.10 178 268 2.9E-281 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Gene3D G3DSA:3.30.70.1320 134 324 2.9E-281 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 SUPERFAMILY SSF82714 721 808 1.09E-8 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 SUPERFAMILY SSF82693 137 312 9.94E-14 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 SUPERFAMILY SSF82866 807 1032 1.27E-45 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Gene3D G3DSA:3.30.70.1440 672 867 2.9E-281 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Gene3D G3DSA:1.20.1640.10 10 510 2.9E-281 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 SUPERFAMILY SSF82714 182 264 2.88E-11 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 SUPERFAMILY SSF82693 570 671 3.66E-9 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Gene3D G3DSA:3.30.70.1430 40 818 2.9E-281 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 SUPERFAMILY SSF82866 289 488 3.4E-45 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Gene3D G3DSA:3.30.70.1430 571 671 2.9E-281 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Gene3D G3DSA:3.30.2090.10 720 810 2.9E-281 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 Pfam PF00873 AcrB/AcrD/AcrF family 4 1028 9.9E-233 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 SUPERFAMILY SSF82693 40 134 5.23E-20 T 13-10-2018 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 1.3E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 1.3E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.3E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 1.3E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 1.3E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 1.3E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 1.3E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_09460 f7fd73793eaf36df5b48de78aff43cff 1049 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.3E-49 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_00360 a4ccefb712efc0df9d6829ff6610ed78 158 SUPERFAMILY SSF51215 19 149 5.23E-19 T 13-10-2018 IPR037923 Transcription regulator HTH-like CDG55_00360 a4ccefb712efc0df9d6829ff6610ed78 158 Pfam PF02311 AraC-like ligand binding domain 14 146 2.4E-20 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDG55_11045 d92f64446f4e7e154b96b433caa90807 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 3.0E-41 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11045 d92f64446f4e7e154b96b433caa90807 103 SUPERFAMILY SSF141091 1 101 1.57E-39 T 13-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11045 d92f64446f4e7e154b96b433caa90807 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.2E-40 T 13-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11045 d92f64446f4e7e154b96b433caa90807 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.256 T 13-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_08390 e02b5cecb0cffa1f7b2ac6b5277ac5ae 216 SUPERFAMILY SSF116726 131 212 8.5E-9 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CDG55_08390 e02b5cecb0cffa1f7b2ac6b5277ac5ae 216 Pfam PF02254 TrkA-N domain 4 119 7.3E-27 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDG55_08390 e02b5cecb0cffa1f7b2ac6b5277ac5ae 216 SUPERFAMILY SSF51735 3 133 2.69E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_08390 e02b5cecb0cffa1f7b2ac6b5277ac5ae 216 Gene3D G3DSA:3.30.70.1450 138 213 8.9E-8 T 13-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 CDG55_08390 e02b5cecb0cffa1f7b2ac6b5277ac5ae 216 Gene3D G3DSA:3.40.50.720 2 137 6.2E-35 T 13-10-2018 CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 SUPERFAMILY SSF50129 2 95 9.14E-34 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 SMART SM00883 3 95 4.8E-54 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 Hamap MF_00580 10 kDa chaperonin [groS]. 3 96 26.628 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 PRINTS PR00297 10kDa chaperonin signature 26 47 1.9E-32 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 PRINTS PR00297 10kDa chaperonin signature 82 95 1.9E-32 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 PRINTS PR00297 10kDa chaperonin signature 4 19 1.9E-32 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 PRINTS PR00297 10kDa chaperonin signature 61 73 1.9E-32 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 Gene3D G3DSA:2.30.33.40 2 96 7.8E-36 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 CDG55_00420 ccc009db0ff3e6bd9465ed1628dbbd2f 96 Pfam PF00166 Chaperonin 10 Kd subunit 3 94 3.2E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_11485 62331359d566e549821cb1a79c81accf 178 Gene3D G3DSA:2.40.50.180 50 116 4.9E-20 T 13-10-2018 CDG55_11485 62331359d566e549821cb1a79c81accf 178 SUPERFAMILY SSF50341 27 167 3.4E-28 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CDG55_11485 62331359d566e549821cb1a79c81accf 178 SMART SM00260 27 164 7.3E-9 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CDG55_11485 62331359d566e549821cb1a79c81accf 178 Gene3D G3DSA:2.30.30.40 34 153 4.9E-20 T 13-10-2018 CDG55_11485 62331359d566e549821cb1a79c81accf 178 Pfam PF01584 CheW-like domain 33 164 3.9E-24 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CDG55_14580 80889662734701e2642ec27be6d14fca 507 Gene3D G3DSA:3.30.465.10 429 507 1.2E-9 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CDG55_14580 80889662734701e2642ec27be6d14fca 507 Gene3D G3DSA:3.10.580.10 277 428 1.7E-38 T 13-10-2018 CDG55_14580 80889662734701e2642ec27be6d14fca 507 SUPERFAMILY SSF56176 423 505 3.82E-13 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CDG55_14580 80889662734701e2642ec27be6d14fca 507 SUPERFAMILY SSF54631 284 418 1.39E-19 T 13-10-2018 CDG55_14580 80889662734701e2642ec27be6d14fca 507 Pfam PF03741 Integral membrane protein TerC family 14 204 6.6E-49 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 CDG55_14580 80889662734701e2642ec27be6d14fca 507 Pfam PF00571 CBS domain 365 415 3.1E-4 T 13-10-2018 IPR000644 CBS domain CDG55_14580 80889662734701e2642ec27be6d14fca 507 Pfam PF03471 Transporter associated domain 429 506 4.4E-12 T 13-10-2018 IPR005170 Transporter-associated domain CDG55_14580 80889662734701e2642ec27be6d14fca 507 SMART SM01091 428 507 1.2E-12 T 13-10-2018 IPR005170 Transporter-associated domain CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 SUPERFAMILY SSF52335 946 1073 7.33E-41 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1058 0.0 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1073 13.486 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 SUPERFAMILY SSF52440 557 675 5.75E-49 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Gene3D G3DSA:3.30.470.20 119 403 2.4E-129 T 13-10-2018 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Gene3D G3DSA:3.40.50.1380 943 1076 3.7E-37 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Pfam PF02142 MGS-like domain 962 1047 7.9E-21 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 SUPERFAMILY SSF56059 128 401 4.6E-109 T 13-10-2018 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 2.0E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 2.0E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 2.0E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.0E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 2.0E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 2.0E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.0E-65 T 13-10-2018 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 874 4.0E-37 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 2.3E-73 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 SUPERFAMILY SSF52440 1 127 1.21E-50 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Gene3D G3DSA:3.40.50.20 554 662 3.1E-48 T 13-10-2018 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 SUPERFAMILY SSF48108 396 554 3.27E-53 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Gene3D G3DSA:3.30.470.20 665 935 4.8E-120 T 13-10-2018 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 SUPERFAMILY SSF56059 673 933 1.26E-103 T 13-10-2018 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1068 13.16 T 13-10-2018 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 426 547 1.3E-38 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Gene3D G3DSA:3.40.50.20 1 116 2.9E-51 T 13-10-2018 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 SMART SM01096 424 547 3.8E-71 T 13-10-2018 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 SMART SM00851 961 1047 2.8E-33 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CDG55_10820 35e208f7bf5c88978078cc6d4a2c9b9f 1077 Gene3D G3DSA:1.10.1030.10 404 553 1.6E-47 T 13-10-2018 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 Gene3D G3DSA:1.10.40.30 416 465 6.4E-22 T 13-10-2018 CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 Pfam PF00206 Lyase 18 350 1.5E-94 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 Gene3D G3DSA:1.10.275.10 7 147 2.0E-54 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 Gene3D G3DSA:1.20.200.10 148 415 3.8E-108 T 13-10-2018 CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 10 469 2.4E-211 T 13-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 SUPERFAMILY SSF48557 9 468 9.42E-134 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 Pfam PF10415 Fumarase C C-terminus 416 468 8.0E-15 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 PRINTS PR00149 Fumarate lyase superfamily signature 188 206 2.4E-27 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 PRINTS PR00149 Fumarate lyase superfamily signature 325 341 2.4E-27 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 2.4E-27 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_07770 6963ddeaa1f7696e9fad45af1b152170 480 PRINTS PR00149 Fumarate lyase superfamily signature 279 306 2.4E-27 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 Gene3D G3DSA:3.30.499.10 334 472 1.8E-49 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 349 360 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 139 154 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 201 214 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 215 228 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 88 101 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 292 306 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 406 419 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 125 138 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 PRINTS PR00415 Aconitase family signature 114 122 1.6E-45 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 Pfam PF00330 Aconitase family (aconitate hydratase) 8 464 1.0E-158 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 472 2.3E-233 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 SUPERFAMILY SSF53732 2 471 1.44E-163 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 472 58.867 T 13-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 CDG55_12895 76bb2b34a4a415fa2c5a8575bc8f8136 472 Gene3D G3DSA:3.30.499.20 5 292 7.2E-95 T 13-10-2018 CDG55_11315 dcc533862ca887d7480877abb1309f66 285 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 6 274 5.8E-48 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CDG55_11315 dcc533862ca887d7480877abb1309f66 285 Pfam PF04085 rod shape-determining protein MreC 125 271 1.9E-36 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CDG55_11315 dcc533862ca887d7480877abb1309f66 285 Gene3D G3DSA:2.40.10.350 182 259 1.5E-35 T 13-10-2018 CDG55_11315 dcc533862ca887d7480877abb1309f66 285 Gene3D G3DSA:2.40.10.340 123 270 1.5E-35 T 13-10-2018 CDG55_11315 dcc533862ca887d7480877abb1309f66 285 PIRSF PIRSF038471 3 285 7.4E-62 T 13-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 SUPERFAMILY SSF50447 159 307 4.78E-32 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 SMART SM00838 406 491 0.0022 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 SUPERFAMILY SSF54980 406 521 1.15E-28 T 13-10-2018 IPR035647 EF-G domain III/V-like CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 Gene3D G3DSA:3.30.70.870 314 598 6.4E-133 T 13-10-2018 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 Gene3D G3DSA:3.40.50.300 3 206 2.6E-62 T 13-10-2018 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 Gene3D G3DSA:3.30.70.240 397 490 6.4E-133 T 13-10-2018 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 Gene3D G3DSA:2.40.30.10 207 307 2.8E-35 T 13-10-2018 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 Pfam PF03144 Elongation factor Tu domain 2 227 297 4.9E-8 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 147 2.6E-23 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 Pfam PF00009 Elongation factor Tu GTP binding domain 5 202 1.4E-51 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 SUPERFAMILY SSF52540 4 227 1.86E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 7 607 2.8E-284 T 13-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 SUPERFAMILY SSF54980 310 395 2.09E-15 T 13-10-2018 IPR035647 EF-G domain III/V-like CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 Pfam PF00679 Elongation factor G C-terminus 405 485 1.2E-23 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 PRINTS PR00315 GTP-binding elongation factor signature 53 61 1.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 PRINTS PR00315 GTP-binding elongation factor signature 79 89 1.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 PRINTS PR00315 GTP-binding elongation factor signature 95 106 1.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_11575 8d4f75540f4a7a740c84a9b164459d21 611 Gene3D G3DSA:2.40.50.250 491 607 6.4E-133 T 13-10-2018 CDG55_09615 0c0d14aef572841b502cf1480b16f0e4 314 Gene3D G3DSA:1.10.20.140 114 186 1.9E-90 T 13-10-2018 CDG55_09615 0c0d14aef572841b502cf1480b16f0e4 314 Gene3D G3DSA:3.40.50.300 11 294 1.9E-90 T 13-10-2018 CDG55_09615 0c0d14aef572841b502cf1480b16f0e4 314 SUPERFAMILY SSF52540 8 150 5.95E-17 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09615 0c0d14aef572841b502cf1480b16f0e4 314 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 307 28.324 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CDG55_09615 0c0d14aef572841b502cf1480b16f0e4 314 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 294 4.9E-86 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CDG55_09615 0c0d14aef572841b502cf1480b16f0e4 314 Pfam PF01715 IPP transferase 41 292 1.5E-75 T 13-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 CDG55_05460 43496bc8c64a2322ea663cb881c3040a 333 Gene3D G3DSA:3.90.1580.10 57 332 3.6E-74 T 13-10-2018 CDG55_05460 43496bc8c64a2322ea663cb881c3040a 333 SUPERFAMILY SSF56436 61 328 7.77E-65 T 13-10-2018 IPR016187 C-type lectin fold CDG55_05460 43496bc8c64a2322ea663cb881c3040a 333 Pfam PF03781 Sulfatase-modifying factor enzyme 1 60 328 1.6E-60 T 13-10-2018 IPR005532 Sulfatase-modifying factor enzyme Reactome: R-HSA-1660662|Reactome: R-HSA-1663150 CDG55_02535 724c36b669d23ffe8fb977f998185fc4 141 Pfam PF07963 Prokaryotic N-terminal methylation motif 4 27 3.1E-10 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02535 724c36b669d23ffe8fb977f998185fc4 141 Pfam PF00114 Pilin (bacterial filament) 37 140 5.7E-20 T 13-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 CDG55_02535 724c36b669d23ffe8fb977f998185fc4 141 Gene3D G3DSA:3.30.700.10 8 141 5.9E-44 T 13-10-2018 CDG55_02535 724c36b669d23ffe8fb977f998185fc4 141 SUPERFAMILY SSF54523 29 141 5.76E-30 T 13-10-2018 CDG55_02535 724c36b669d23ffe8fb977f998185fc4 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 7.7E-11 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 SUPERFAMILY SSF51905 2 310 1.58E-38 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 Gene3D G3DSA:3.30.390.120 321 384 1.9E-14 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 287 2.2E-52 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 238 252 4.0E-15 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 175 4.0E-15 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 284 4.0E-15 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 4.0E-15 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 Gene3D G3DSA:3.50.50.60 5 285 1.2E-81 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 103 121 1.8E-23 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 1.8E-23 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 150 168 1.8E-23 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 1.8E-23 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 1.8E-23 T 13-10-2018 CDG55_06205 b3dc80221d49b93a1a98a12bbd82a80d 393 Gene3D G3DSA:3.50.50.60 111 249 1.2E-81 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05280 e6eb3a7766287c50d129bc5af3e5b365 410 Gene3D G3DSA:1.10.150.130 104 218 1.7E-24 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_05280 e6eb3a7766287c50d129bc5af3e5b365 410 SUPERFAMILY SSF56349 108 388 8.24E-58 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_05280 e6eb3a7766287c50d129bc5af3e5b365 410 Pfam PF13356 Arm DNA-binding domain 11 96 2.4E-15 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CDG55_05280 e6eb3a7766287c50d129bc5af3e5b365 410 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 108 161 4.4E-6 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDG55_05280 e6eb3a7766287c50d129bc5af3e5b365 410 Pfam PF00589 Phage integrase family 218 378 8.0E-26 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_05280 e6eb3a7766287c50d129bc5af3e5b365 410 Gene3D G3DSA:3.30.160.390 10 97 7.2E-23 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CDG55_05280 e6eb3a7766287c50d129bc5af3e5b365 410 Gene3D G3DSA:1.10.443.10 219 393 7.1E-21 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 223 241 1.8E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 202 222 1.8E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 269 287 1.8E-7 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 Gene3D G3DSA:3.40.50.300 199 366 2.3E-37 T 13-10-2018 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 Gene3D G3DSA:3.40.50.11060 18 139 2.5E-38 T 13-10-2018 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 12 360 6.9E-145 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 Pfam PF13167 GTP-binding GTPase N-terminal 28 113 6.1E-33 T 13-10-2018 IPR025121 GTPase HflX, N-terminal CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 SUPERFAMILY SSF52540 200 373 3.23E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 Pfam PF01926 50S ribosome-binding GTPase 202 319 8.6E-20 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 Pfam PF16360 GTP-binding GTPase Middle Region 115 194 3.8E-26 T 13-10-2018 IPR032305 GTP-binding protein, middle domain CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 PIRSF PIRSF006809 5 420 5.4E-138 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 CDG55_03515 3fe780c5dd59b5b61fd2ff7a14ba8d96 442 Hamap MF_00900 GTPase HflX [hflX]. 27 390 46.329 T 13-10-2018 IPR016496 GTPase HflX GO:0005525 CDG55_10355 155ff0d1cfa3ee045fb7c09f1b86d737 340 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 82 294 1.6E-46 T 13-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 CDG55_10355 155ff0d1cfa3ee045fb7c09f1b86d737 340 Gene3D G3DSA:3.40.1750.20 188 254 5.6E-63 T 13-10-2018 CDG55_10355 155ff0d1cfa3ee045fb7c09f1b86d737 340 SUPERFAMILY SSF52096 78 282 2.61E-39 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_10355 155ff0d1cfa3ee045fb7c09f1b86d737 340 Pfam PF01343 Peptidase family S49 149 299 4.4E-37 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 CDG55_10355 155ff0d1cfa3ee045fb7c09f1b86d737 340 Gene3D G3DSA:3.90.226.10 83 291 5.6E-63 T 13-10-2018 CDG55_07405 e98fb7a3e1e406720fcfb92d821599f6 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 2 358 2.4E-161 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CDG55_07405 e98fb7a3e1e406720fcfb92d821599f6 362 Gene3D G3DSA:3.30.70.1660 112 342 1.0E-94 T 13-10-2018 CDG55_07405 e98fb7a3e1e406720fcfb92d821599f6 362 Pfam PF03462 PCRF domain 14 203 4.1E-72 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 CDG55_07405 e98fb7a3e1e406720fcfb92d821599f6 362 SUPERFAMILY SSF75620 12 353 1.15E-133 T 13-10-2018 CDG55_07405 e98fb7a3e1e406720fcfb92d821599f6 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 357 40.221 T 13-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 CDG55_07405 e98fb7a3e1e406720fcfb92d821599f6 362 Gene3D G3DSA:3.30.160.20 210 297 1.0E-94 T 13-10-2018 CDG55_07405 e98fb7a3e1e406720fcfb92d821599f6 362 Pfam PF00472 RF-1 domain 213 321 2.0E-40 T 13-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 CDG55_07405 e98fb7a3e1e406720fcfb92d821599f6 362 SMART SM00937 63 178 4.3E-64 T 13-10-2018 IPR005139 Peptide chain release factor GO:0006415 CDG55_00185 6c352afc6a869415f82077ffe4ee0fd4 198 Gene3D G3DSA:1.10.3290.10 7 197 1.9E-60 T 13-10-2018 IPR036597 Fido-like domain superfamily CDG55_00185 6c352afc6a869415f82077ffe4ee0fd4 198 SUPERFAMILY SSF140931 47 193 3.01E-36 T 13-10-2018 IPR036597 Fido-like domain superfamily CDG55_00185 6c352afc6a869415f82077ffe4ee0fd4 198 Pfam PF02661 Fic/DOC family 54 152 4.2E-18 T 13-10-2018 IPR003812 Fido domain CDG55_15030 a8f45bdc2724a9045a6142b600ab4e31 302 SUPERFAMILY SSF55486 234 297 8.81E-14 T 13-10-2018 CDG55_15030 a8f45bdc2724a9045a6142b600ab4e31 302 Pfam PF00413 Matrixin 42 296 3.6E-12 T 13-10-2018 IPR001818 Peptidase M10, metallopeptidase GO:0004222|GO:0006508|GO:0008270|GO:0031012 CDG55_15030 a8f45bdc2724a9045a6142b600ab4e31 302 PRINTS PR00138 Matrixin signature 65 80 3.4E-8 T 13-10-2018 IPR021190 Peptidase M10A GO:0004222|GO:0006508|GO:0008270|GO:0031012 CDG55_15030 a8f45bdc2724a9045a6142b600ab4e31 302 PRINTS PR00138 Matrixin signature 256 281 3.4E-8 T 13-10-2018 IPR021190 Peptidase M10A GO:0004222|GO:0006508|GO:0008270|GO:0031012 CDG55_15030 a8f45bdc2724a9045a6142b600ab4e31 302 Gene3D G3DSA:3.40.390.10 140 300 5.9E-14 T 13-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 CDG55_15030 a8f45bdc2724a9045a6142b600ab4e31 302 SMART SM00235 115 302 0.0047 T 13-10-2018 IPR006026 Peptidase, metallopeptidase GO:0006508|GO:0008237|GO:0008270 CDG55_10255 a49cc118745d954e293ee7ab97542639 232 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 9 227 38.72 T 13-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 CDG55_10255 a49cc118745d954e293ee7ab97542639 232 TIGRFAM TIGR02796 tolQ: protein TolQ 11 222 1.2E-82 T 13-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 CDG55_10255 a49cc118745d954e293ee7ab97542639 232 Pfam PF01618 MotA/TolQ/ExbB proton channel family 81 207 1.0E-37 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CDG55_03625 e0a53bf5cfc7493bc9fdfa0b62141638 100 Pfam PF03795 YCII-related domain 4 94 4.5E-21 T 13-10-2018 IPR005545 YCII-related CDG55_03625 e0a53bf5cfc7493bc9fdfa0b62141638 100 SUPERFAMILY SSF54909 1 96 6.17E-26 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_03625 e0a53bf5cfc7493bc9fdfa0b62141638 100 Gene3D G3DSA:3.30.70.1060 1 97 3.4E-30 T 13-10-2018 CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 SUPERFAMILY SSF46785 5 61 8.79E-11 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 1.2E-11 T 13-10-2018 CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 Gene3D G3DSA:1.10.10.10 2 55 5.6E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 SMART SM00344 5 107 4.4E-17 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 Gene3D G3DSA:3.30.70.920 56 137 5.0E-8 T 13-10-2018 CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 1.1E-7 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 1.1E-7 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 1.1E-7 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_01935 0fd4abe9638f85b8c2390f893af6c33a 137 SUPERFAMILY SSF54909 65 134 2.41E-6 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_13475 7657237c9ed5938dc2be9d7ca4077854 220 SUPERFAMILY SSF55068 29 168 2.22E-37 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_13475 7657237c9ed5938dc2be9d7ca4077854 220 Gene3D G3DSA:3.30.1060.10 28 214 8.1E-42 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_13475 7657237c9ed5938dc2be9d7ca4077854 220 Pfam PF01625 Peptide methionine sulfoxide reductase 35 169 6.3E-29 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_10130 f05ea1e5d01b010b0a58d2b6ffa63891 335 Pfam PF13531 Bacterial extracellular solute-binding protein 46 281 4.2E-43 T 13-10-2018 CDG55_10130 f05ea1e5d01b010b0a58d2b6ffa63891 335 Gene3D G3DSA:3.40.190.10 28 296 4.3E-131 T 13-10-2018 CDG55_10130 f05ea1e5d01b010b0a58d2b6ffa63891 335 SUPERFAMILY SSF53850 21 328 2.38E-84 T 13-10-2018 CDG55_10130 f05ea1e5d01b010b0a58d2b6ffa63891 335 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 21 327 2.5E-145 T 13-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 CDG55_10130 f05ea1e5d01b010b0a58d2b6ffa63891 335 Gene3D G3DSA:3.40.190.10 116 326 4.3E-131 T 13-10-2018 CDG55_08625 96c1be437956c9d25de0b55c2cadc933 409 SMART SM00267 223 399 3.9E-59 T 13-10-2018 IPR000160 GGDEF domain CDG55_08625 96c1be437956c9d25de0b55c2cadc933 409 SUPERFAMILY SSF55073 239 400 4.16E-47 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_08625 96c1be437956c9d25de0b55c2cadc933 409 Pfam PF00990 Diguanylate cyclase, GGDEF domain 235 395 3.5E-47 T 13-10-2018 IPR000160 GGDEF domain CDG55_08625 96c1be437956c9d25de0b55c2cadc933 409 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 232 399 2.8E-50 T 13-10-2018 IPR000160 GGDEF domain CDG55_08625 96c1be437956c9d25de0b55c2cadc933 409 Gene3D G3DSA:3.30.70.270 220 400 2.4E-53 T 13-10-2018 CDG55_08800 a630db6452000c7051a8310b17ed6675 207 SUPERFAMILY SSF55144 36 176 6.98E-9 T 13-10-2018 IPR009097 Cyclic phosphodiesterase CDG55_08800 a630db6452000c7051a8310b17ed6675 207 Gene3D G3DSA:3.90.1140.10 34 201 4.5E-10 T 13-10-2018 CDG55_08800 a630db6452000c7051a8310b17ed6675 207 Pfam PF13563 2'-5' RNA ligase superfamily 57 187 7.7E-10 T 13-10-2018 CDG55_07115 bac755bf0be5556768b2153fb868f46a 170 SUPERFAMILY SSF89562 28 168 1.96E-45 T 13-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily CDG55_07115 bac755bf0be5556768b2153fb868f46a 170 TIGRFAM TIGR01935 NOT-MenG: RraA family 8 162 1.2E-60 T 13-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 CDG55_07115 bac755bf0be5556768b2153fb868f46a 170 Gene3D G3DSA:3.50.30.40 4 169 9.0E-62 T 13-10-2018 CDG55_07115 bac755bf0be5556768b2153fb868f46a 170 Pfam PF03737 Aldolase/RraA 8 162 1.3E-45 T 13-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein CDG55_13220 5633fe7026f88acd82bf7fa99beef373 407 Pfam PF01544 CorA-like Mg2+ transporter protein 63 357 2.1E-41 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CDG55_13220 5633fe7026f88acd82bf7fa99beef373 407 Gene3D G3DSA:1.20.58.340 305 361 1.3E-19 T 13-10-2018 CDG55_13220 5633fe7026f88acd82bf7fa99beef373 407 SUPERFAMILY SSF143865 27 295 3.14E-18 T 13-10-2018 CDG55_13220 5633fe7026f88acd82bf7fa99beef373 407 SUPERFAMILY SSF144083 297 358 1.7E-19 T 13-10-2018 CDG55_13220 5633fe7026f88acd82bf7fa99beef373 407 Gene3D G3DSA:1.20.58.340 166 303 1.1E-5 T 13-10-2018 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 SUPERFAMILY SSF46689 354 469 3.58E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 432 449 3.0E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 449 469 3.0E-10 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 Pfam PF00072 Response regulator receiver domain 8 117 2.8E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 Pfam PF02954 Bacterial regulatory protein, Fis family 426 466 8.7E-15 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 Gene3D G3DSA:1.10.10.60 400 471 7.6E-15 T 13-10-2018 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 SUPERFAMILY SSF52172 6 185 1.35E-39 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_13905 1884123f803acf89d8027c3487b152fe 474 SMART SM00382 160 303 3.2E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_13905 1884123f803acf89d8027c3487b152fe 474 Gene3D G3DSA:1.10.8.60 311 377 4.1E-23 T 13-10-2018 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 Gene3D G3DSA:3.40.50.300 127 310 2.1E-61 T 13-10-2018 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 Gene3D G3DSA:3.40.50.2300 7 124 3.5E-30 T 13-10-2018 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 SUPERFAMILY SSF52540 140 382 3.97E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13905 1884123f803acf89d8027c3487b152fe 474 SMART SM00448 6 117 7.9E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_13905 1884123f803acf89d8027c3487b152fe 474 Pfam PF00158 Sigma-54 interaction domain 140 306 1.6E-66 T 13-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 Gene3D G3DSA:3.90.740.10 204 420 1.2E-231 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 246 269 3.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 573 582 3.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 539 552 3.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 60 71 3.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 413 428 3.8E-32 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 SUPERFAMILY SSF47323 664 932 1.72E-73 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 Gene3D G3DSA:3.40.50.620 34 641 1.2E-231 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 24 852 2.5E-275 T 13-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 SUPERFAMILY SSF50677 213 415 6.59E-51 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 Pfam PF08264 Anticodon-binding domain of tRNA 697 852 2.5E-27 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 SUPERFAMILY SSF52374 11 659 5.4E-138 T 13-10-2018 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 Pfam PF06827 Zinc finger found in FPG and IleRS 905 932 4.4E-6 T 13-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 11 936 21.06 T 13-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 36 649 1.9E-203 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_14940 f6b1b3359e262e24bd119075fde56238 945 Gene3D G3DSA:1.10.730.20 652 936 4.1E-88 T 13-10-2018 CDG55_04025 f1d59860bb66ff1287313866901bcc3f 294 Pfam PF04333 MlaA lipoprotein 75 265 6.7E-61 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CDG55_04025 f1d59860bb66ff1287313866901bcc3f 294 PRINTS PR01805 VacJ lipoprotein signature 144 161 1.7E-16 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CDG55_04025 f1d59860bb66ff1287313866901bcc3f 294 PRINTS PR01805 VacJ lipoprotein signature 93 109 1.7E-16 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CDG55_04025 f1d59860bb66ff1287313866901bcc3f 294 PRINTS PR01805 VacJ lipoprotein signature 179 196 1.7E-16 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CDG55_04025 f1d59860bb66ff1287313866901bcc3f 294 PRINTS PR01805 VacJ lipoprotein signature 76 89 1.7E-16 T 13-10-2018 IPR007428 MlaA lipoprotein GO:0016020 CDG55_10940 e208ee60f0da59acc405b68f76d2c281 310 Hamap MF_00469 UPF0176 protein YceA [yceA]. 17 267 42.739 T 13-10-2018 IPR020936 Uncharacterised protein family UPF0176 CDG55_10940 e208ee60f0da59acc405b68f76d2c281 310 Gene3D G3DSA:3.30.70.100 9 110 5.4E-29 T 13-10-2018 CDG55_10940 e208ee60f0da59acc405b68f76d2c281 310 SMART SM00450 126 227 3.3E-21 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_10940 e208ee60f0da59acc405b68f76d2c281 310 Gene3D G3DSA:3.40.250.10 114 260 2.9E-50 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_10940 e208ee60f0da59acc405b68f76d2c281 310 SUPERFAMILY SSF52821 121 250 8.64E-32 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_10940 e208ee60f0da59acc405b68f76d2c281 310 Pfam PF00581 Rhodanese-like domain 128 223 6.8E-12 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_01540 bad457370615ce55aaff277001dbc98e 401 SUPERFAMILY SSF51690 121 397 3.73E-90 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDG55_01540 bad457370615ce55aaff277001dbc98e 401 SUPERFAMILY SSF54675 2 140 7.46E-41 T 13-10-2018 CDG55_01540 bad457370615ce55aaff277001dbc98e 401 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 1 399 47.403 T 13-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDG55_01540 bad457370615ce55aaff277001dbc98e 401 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 172 398 6.3E-83 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CDG55_01540 bad457370615ce55aaff277001dbc98e 401 Gene3D G3DSA:3.20.140.10 1 401 1.9E-149 T 13-10-2018 CDG55_01540 bad457370615ce55aaff277001dbc98e 401 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 4 398 5.3E-171 T 13-10-2018 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDG55_01540 bad457370615ce55aaff277001dbc98e 401 PIRSF PIRSF000484 1 385 1.0E-79 T 13-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 SMART SM00357 52 118 5.8E-19 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 SMART SM00382 170 355 3.8E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_03935 7307c7686f781b83068c506ab34f377b 422 SMART SM00959 5 47 8.6E-17 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 5.1E-32 T 13-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 SUPERFAMILY SSF50249 48 125 1.33E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03935 7307c7686f781b83068c506ab34f377b 422 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 6.7E-211 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.1E-15 T 13-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 242.563 T 13-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 Gene3D G3DSA:1.10.720.10 1 46 4.1E-20 T 13-10-2018 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 Gene3D G3DSA:3.40.50.300 130 417 1.4E-128 T 13-10-2018 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 SUPERFAMILY SSF52540 90 370 4.65E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03935 7307c7686f781b83068c506ab34f377b 422 SUPERFAMILY SSF68912 1 46 2.2E-11 T 13-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily CDG55_03935 7307c7686f781b83068c506ab34f377b 422 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 3.2E-23 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_03935 7307c7686f781b83068c506ab34f377b 422 Gene3D G3DSA:2.40.50.140 47 123 4.6E-34 T 13-10-2018 CDG55_04340 164691024d73b6caae620af599266c8e 441 SUPERFAMILY SSF142984 254 337 8.24E-21 T 13-10-2018 CDG55_04340 164691024d73b6caae620af599266c8e 441 Gene3D G3DSA:3.10.20.600 247 339 1.2E-27 T 13-10-2018 CDG55_04340 164691024d73b6caae620af599266c8e 441 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 59 230 3.1E-49 T 13-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04340 164691024d73b6caae620af599266c8e 441 Gene3D G3DSA:1.20.1440.230 340 439 3.8E-26 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04340 164691024d73b6caae620af599266c8e 441 SUPERFAMILY SSF140490 339 434 1.24E-30 T 13-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04340 164691024d73b6caae620af599266c8e 441 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 19 429 4.1E-179 T 13-10-2018 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04340 164691024d73b6caae620af599266c8e 441 SMART SM00928 342 387 3.3E-20 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04340 164691024d73b6caae620af599266c8e 441 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 344 427 7.6E-25 T 13-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04340 164691024d73b6caae620af599266c8e 441 Pfam PF10531 SLBB domain 259 303 2.0E-6 T 13-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04340 164691024d73b6caae620af599266c8e 441 Gene3D G3DSA:3.40.50.11540 64 241 2.9E-78 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04340 164691024d73b6caae620af599266c8e 441 SUPERFAMILY SSF142019 25 248 3.14E-85 T 13-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_03030 88529e9209b58415ec8db184a98cd91c 228 SUPERFAMILY SSF53271 49 207 8.78E-23 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CDG55_03030 88529e9209b58415ec8db184a98cd91c 228 Pfam PF00156 Phosphoribosyl transferase domain 154 211 2.4E-8 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDG55_03030 88529e9209b58415ec8db184a98cd91c 228 Gene3D G3DSA:3.40.50.2020 52 219 1.7E-16 T 13-10-2018 CDG55_04070 c6ecca51ce3ffa9224657432793534fb 419 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 407 1.8E-108 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CDG55_04070 c6ecca51ce3ffa9224657432793534fb 419 Gene3D G3DSA:3.65.10.10 21 229 2.2E-175 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CDG55_04070 c6ecca51ce3ffa9224657432793534fb 419 SUPERFAMILY SSF55205 1 418 2.35E-143 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CDG55_04070 c6ecca51ce3ffa9224657432793534fb 419 Gene3D G3DSA:3.65.10.10 6 414 2.2E-175 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CDG55_04070 c6ecca51ce3ffa9224657432793534fb 419 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 2.6E-176 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_04070 c6ecca51ce3ffa9224657432793534fb 419 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 44.307 T 13-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 Gene3D G3DSA:3.30.360.10 161 324 3.2E-125 T 13-10-2018 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 112 4.5E-33 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 SUPERFAMILY SSF55347 162 323 2.74E-55 T 13-10-2018 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 239 256 3.9E-27 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 183 199 3.9E-27 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 279 294 3.9E-27 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 119 132 3.9E-27 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 156 174 3.9E-27 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 167 322 3.1E-50 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 SUPERFAMILY SSF51735 2 190 1.32E-47 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09790 96b2bef243b45db58549f618ce18233c 341 PIRSF PIRSF000149 1 341 1.5E-113 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 Gene3D G3DSA:3.40.50.720 3 336 3.2E-125 T 13-10-2018 CDG55_09790 96b2bef243b45db58549f618ce18233c 341 SMART SM00846 2 162 2.1E-67 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_03695 a684fe11cc82f735cb0be2266c2e92f4 399 Pfam PF07690 Major Facilitator Superfamily 27 180 6.7E-17 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_03695 a684fe11cc82f735cb0be2266c2e92f4 399 Pfam PF07690 Major Facilitator Superfamily 218 383 1.1E-8 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_03695 a684fe11cc82f735cb0be2266c2e92f4 399 Gene3D G3DSA:1.20.1250.20 8 196 1.2E-20 T 13-10-2018 CDG55_03695 a684fe11cc82f735cb0be2266c2e92f4 399 Gene3D G3DSA:1.20.1250.20 207 387 5.1E-13 T 13-10-2018 CDG55_03695 a684fe11cc82f735cb0be2266c2e92f4 399 SUPERFAMILY SSF103473 8 384 5.75E-44 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 Gene3D G3DSA:2.170.120.12 53 175 1.3E-79 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 225 1.6E-23 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 315 34.681 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 Gene3D G3DSA:1.10.150.20 243 327 2.4E-37 T 13-10-2018 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 154 1.1E-20 T 13-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 SUPERFAMILY SSF55257 6 231 3.73E-31 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 SUPERFAMILY SSF47789 249 322 6.54E-26 T 13-10-2018 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 314 1.8E-105 T 13-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 SUPERFAMILY SSF56553 53 176 7.85E-36 T 13-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 Gene3D G3DSA:3.30.1360.10 17 225 1.3E-79 T 13-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 306 4.8E-24 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 254 324 6.0E-35 T 13-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_03235 fa51f8624385791661a4ee33cac1f90d 335 SMART SM00662 23 232 1.5E-87 T 13-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_07170 5370d3ae99741239864bf854de8c3612 197 Hamap MF_00528 Septum formation protein Maf [maf]. 5 196 22.658 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CDG55_07170 5370d3ae99741239864bf854de8c3612 197 PIRSF PIRSF006305 1 196 2.1E-37 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CDG55_07170 5370d3ae99741239864bf854de8c3612 197 Gene3D G3DSA:3.90.950.10 5 196 1.7E-48 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CDG55_07170 5370d3ae99741239864bf854de8c3612 197 Pfam PF02545 Maf-like protein 6 191 1.5E-38 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CDG55_07170 5370d3ae99741239864bf854de8c3612 197 TIGRFAM TIGR00172 maf: septum formation protein Maf 5 190 8.5E-40 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CDG55_07170 5370d3ae99741239864bf854de8c3612 197 SUPERFAMILY SSF52972 2 191 1.31E-49 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CDG55_03165 5f1db85d427e1d96e6305bdf891c2728 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 101 9.0E-34 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03165 5f1db85d427e1d96e6305bdf891c2728 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 95 19.262 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03165 5f1db85d427e1d96e6305bdf891c2728 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 37 100 5.8E-21 T 13-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03165 5f1db85d427e1d96e6305bdf891c2728 105 Pfam PF00467 KOW motif 6 34 8.6E-7 T 13-10-2018 IPR005824 KOW CDG55_03165 5f1db85d427e1d96e6305bdf891c2728 105 SMART SM00739 3 30 2.8E-6 T 13-10-2018 IPR005824 KOW CDG55_03165 5f1db85d427e1d96e6305bdf891c2728 105 SUPERFAMILY SSF50104 3 99 1.32E-29 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CDG55_03165 5f1db85d427e1d96e6305bdf891c2728 105 Gene3D G3DSA:2.30.30.30 1 102 9.3E-34 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CDG55_06840 6e87dfef11e36171251dbe9b6d5f13db 229 Gene3D G3DSA:1.10.10.10 127 228 1.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_06840 6e87dfef11e36171251dbe9b6d5f13db 229 SUPERFAMILY SSF52172 2 125 1.15E-36 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_06840 6e87dfef11e36171251dbe9b6d5f13db 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 221 1.9E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_06840 6e87dfef11e36171251dbe9b6d5f13db 229 Gene3D G3DSA:3.40.50.2300 1 125 8.7E-35 T 13-10-2018 CDG55_06840 6e87dfef11e36171251dbe9b6d5f13db 229 SUPERFAMILY SSF46894 127 222 4.82E-22 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_06840 6e87dfef11e36171251dbe9b6d5f13db 229 Pfam PF00072 Response regulator receiver domain 6 116 3.8E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_06840 6e87dfef11e36171251dbe9b6d5f13db 229 SMART SM00862 150 224 9.6E-17 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_06840 6e87dfef11e36171251dbe9b6d5f13db 229 SMART SM00448 4 116 9.1E-34 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_07565 40539a016d0ade86f848ce79b5537b5e 368 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 149 226 1.3E-16 T 13-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CDG55_07565 40539a016d0ade86f848ce79b5537b5e 368 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 275 364 3.9E-21 T 13-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 CDG55_07565 40539a016d0ade86f848ce79b5537b5e 368 SUPERFAMILY SSF53901 2 364 7.88E-47 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_07565 40539a016d0ade86f848ce79b5537b5e 368 Gene3D G3DSA:3.40.47.10 2 212 2.5E-53 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_07565 40539a016d0ade86f848ce79b5537b5e 368 Gene3D G3DSA:3.40.47.10 213 366 1.4E-37 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_02675 01432371c94e3f9cf4097a8eb56e23d5 92 Pfam PF01192 RNA polymerase Rpb6 8 59 4.3E-17 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CDG55_02675 01432371c94e3f9cf4097a8eb56e23d5 92 SMART SM01409 8 61 1.4E-17 T 13-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CDG55_02675 01432371c94e3f9cf4097a8eb56e23d5 92 SUPERFAMILY SSF63562 1 69 1.92E-25 T 13-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CDG55_02675 01432371c94e3f9cf4097a8eb56e23d5 92 Gene3D G3DSA:3.90.940.10 1 83 5.1E-27 T 13-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 CDG55_02675 01432371c94e3f9cf4097a8eb56e23d5 92 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 2.5E-22 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_02675 01432371c94e3f9cf4097a8eb56e23d5 92 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 17.213 T 13-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Gene3D G3DSA:3.40.1010.10 215 331 8.4E-47 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Hamap MF_01646 Siroheme synthase [cysG]. 1 457 49.905 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 SUPERFAMILY SSF51735 2 113 1.29E-18 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Gene3D G3DSA:1.10.8.210 150 211 4.9E-10 T 13-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Pfam PF13241 Putative NAD(P)-binding 7 116 1.7E-24 T 13-10-2018 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 PIRSF PIRSF036426 1 457 4.1E-199 T 13-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Gene3D G3DSA:3.30.160.110 114 149 2.1E-14 T 13-10-2018 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 208 8.2E-60 T 13-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 451 1.2E-95 T 13-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Pfam PF10414 Sirohaem synthase dimerisation region 152 208 1.1E-17 T 13-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 SUPERFAMILY SSF75615 115 211 1.7E-25 T 13-10-2018 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 SUPERFAMILY SSF53790 212 456 4.84E-82 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Gene3D G3DSA:3.30.950.10 332 457 1.1E-46 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 1.4E-53 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CDG55_11015 92032b0ae7857e0f55fe58acc5882e96 457 Gene3D G3DSA:3.40.50.720 1 113 1.6E-27 T 13-10-2018 CDG55_02720 eb7e738d73c5f285b10175f635b0b5c5 158 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 3.5E-11 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02720 eb7e738d73c5f285b10175f635b0b5c5 158 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 30 128 1.8E-8 T 13-10-2018 IPR031982 Type IV minor pilin ComP CDG55_02720 eb7e738d73c5f285b10175f635b0b5c5 158 SUPERFAMILY SSF54523 9 151 1.67E-21 T 13-10-2018 CDG55_02720 eb7e738d73c5f285b10175f635b0b5c5 158 PRINTS PR00813 Bacterial general secretion pathway protein G signature 8 33 3.3E-10 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 CDG55_02720 eb7e738d73c5f285b10175f635b0b5c5 158 PRINTS PR00813 Bacterial general secretion pathway protein G signature 44 62 3.3E-10 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 CDG55_02720 eb7e738d73c5f285b10175f635b0b5c5 158 Gene3D G3DSA:3.30.700.10 9 152 6.9E-23 T 13-10-2018 CDG55_02720 eb7e738d73c5f285b10175f635b0b5c5 158 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 29 2.6E-10 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 PIRSF PIRSF000161 3 270 4.3E-86 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 5 267 34.868 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 SUPERFAMILY SSF51735 5 270 4.18E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 SUPERFAMILY SSF55347 129 238 3.27E-37 T 13-10-2018 CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 6 267 1.4E-97 T 13-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 6 127 3.0E-40 T 13-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 130 266 4.0E-42 T 13-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 Gene3D G3DSA:3.40.50.720 7 266 1.3E-100 T 13-10-2018 CDG55_01365 ad731fe08884a09f7cba2a5e1cef085d 273 Gene3D G3DSA:3.30.360.10 129 236 1.3E-100 T 13-10-2018 CDG55_07440 7889c4c191e448d7359458c54adf9006 575 Pfam PF00364 Biotin-requiring enzyme 510 574 1.1E-13 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CDG55_07440 7889c4c191e448d7359458c54adf9006 575 SUPERFAMILY SSF56059 85 335 3.01E-55 T 13-10-2018 CDG55_07440 7889c4c191e448d7359458c54adf9006 575 SUPERFAMILY SSF51230 498 574 4.19E-16 T 13-10-2018 IPR011053 Single hybrid motif CDG55_07440 7889c4c191e448d7359458c54adf9006 575 SMART SM00878 337 444 1.7E-57 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_07440 7889c4c191e448d7359458c54adf9006 575 Gene3D G3DSA:2.40.50.100 500 575 1.2E-17 T 13-10-2018 CDG55_07440 7889c4c191e448d7359458c54adf9006 575 SUPERFAMILY SSF51246 333 445 2.15E-38 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CDG55_07440 7889c4c191e448d7359458c54adf9006 575 Gene3D G3DSA:3.30.470.130 1 449 4.7E-172 T 13-10-2018 CDG55_07440 7889c4c191e448d7359458c54adf9006 575 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 324 1.8E-74 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDG55_07440 7889c4c191e448d7359458c54adf9006 575 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 112 1.5E-41 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_07440 7889c4c191e448d7359458c54adf9006 575 SUPERFAMILY SSF52440 4 115 3.24E-43 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_07440 7889c4c191e448d7359458c54adf9006 575 Pfam PF02785 Biotin carboxylase C-terminal domain 337 445 6.1E-37 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_13570 c924e5cdacb4871e74fbc5f1b95152e0 352 SMART SM00267 187 352 2.1E-31 T 13-10-2018 IPR000160 GGDEF domain CDG55_13570 c924e5cdacb4871e74fbc5f1b95152e0 352 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 195 351 2.4E-34 T 13-10-2018 IPR000160 GGDEF domain CDG55_13570 c924e5cdacb4871e74fbc5f1b95152e0 352 Gene3D G3DSA:3.30.70.270 184 352 3.8E-40 T 13-10-2018 CDG55_13570 c924e5cdacb4871e74fbc5f1b95152e0 352 SUPERFAMILY SSF46458 5 162 6.04E-30 T 13-10-2018 IPR009050 Globin-like superfamily CDG55_13570 c924e5cdacb4871e74fbc5f1b95152e0 352 Pfam PF11563 Protoglobin 17 166 7.7E-31 T 13-10-2018 CDG55_13570 c924e5cdacb4871e74fbc5f1b95152e0 352 Gene3D G3DSA:1.10.490.10 8 163 4.9E-36 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 CDG55_13570 c924e5cdacb4871e74fbc5f1b95152e0 352 Pfam PF00990 Diguanylate cyclase, GGDEF domain 199 349 1.6E-33 T 13-10-2018 IPR000160 GGDEF domain CDG55_13570 c924e5cdacb4871e74fbc5f1b95152e0 352 SUPERFAMILY SSF55073 203 349 2.16E-34 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_02985 683edf2ce13fe7ef0946cb30b6d649b6 646 SMART SM00490 268 349 5.6E-32 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_02985 683edf2ce13fe7ef0946cb30b6d649b6 646 SUPERFAMILY SSF52540 84 370 1.52E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_02985 683edf2ce13fe7ef0946cb30b6d649b6 646 SMART SM00487 22 231 1.6E-54 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_02985 683edf2ce13fe7ef0946cb30b6d649b6 646 Gene3D G3DSA:3.40.50.300 1 220 7.9E-72 T 13-10-2018 CDG55_02985 683edf2ce13fe7ef0946cb30b6d649b6 646 Pfam PF00271 Helicase conserved C-terminal domain 246 349 1.4E-25 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_02985 683edf2ce13fe7ef0946cb30b6d649b6 646 Pfam PF00270 DEAD/DEAH box helicase 27 201 3.1E-45 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDG55_02985 683edf2ce13fe7ef0946cb30b6d649b6 646 Gene3D G3DSA:3.40.50.300 222 389 3.5E-47 T 13-10-2018 CDG55_13485 3265a6903b740f5b6357559968c4efe0 146 Gene3D G3DSA:2.170.150.20 5 146 1.2E-53 T 13-10-2018 CDG55_13485 3265a6903b740f5b6357559968c4efe0 146 Pfam PF01641 SelR domain 28 145 8.1E-46 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDG55_13485 3265a6903b740f5b6357559968c4efe0 146 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 24 146 2.4E-49 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDG55_13485 3265a6903b740f5b6357559968c4efe0 146 SUPERFAMILY SSF51316 23 145 8.89E-51 T 13-10-2018 IPR011057 Mss4-like superfamily CDG55_01770 6cadc12a4f15fa0a5b8e6e34a605b1cd 160 SUPERFAMILY SSF52833 3 159 1.99E-62 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_01770 6cadc12a4f15fa0a5b8e6e34a605b1cd 160 PIRSF PIRSF000303 1 160 1.6E-69 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_01770 6cadc12a4f15fa0a5b8e6e34a605b1cd 160 Gene3D G3DSA:3.40.30.10 1 160 2.0E-73 T 13-10-2018 CDG55_01770 6cadc12a4f15fa0a5b8e6e34a605b1cd 160 Pfam PF00255 Glutathione peroxidase 4 110 3.8E-43 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_01770 6cadc12a4f15fa0a5b8e6e34a605b1cd 160 PRINTS PR01011 Glutathione peroxidase family signature 123 132 5.2E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_01770 6cadc12a4f15fa0a5b8e6e34a605b1cd 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 5.2E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_01770 6cadc12a4f15fa0a5b8e6e34a605b1cd 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 5.2E-20 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_04780 fd7be4febf29ac5324bfcccb11a8f152 98 SUPERFAMILY SSF50715 5 97 7.15E-26 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_04780 fd7be4febf29ac5324bfcccb11a8f152 98 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 4 98 24.151 T 13-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 CDG55_04780 fd7be4febf29ac5324bfcccb11a8f152 98 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 17 97 7.0E-37 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CDG55_04780 fd7be4febf29ac5324bfcccb11a8f152 98 Gene3D G3DSA:2.40.240.10 3 98 2.5E-29 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_04780 fd7be4febf29ac5324bfcccb11a8f152 98 Pfam PF01386 Ribosomal L25p family 6 95 1.5E-24 T 13-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 CDG55_06445 4d142f379f7ad01dee719f83d97abac5 294 Pfam PF05673 Protein of unknown function (DUF815) 36 284 1.1E-102 T 13-10-2018 IPR008533 Domain of unknown function DUF815 CDG55_06445 4d142f379f7ad01dee719f83d97abac5 294 Gene3D G3DSA:3.40.50.300 50 191 1.6E-10 T 13-10-2018 CDG55_06445 4d142f379f7ad01dee719f83d97abac5 294 SUPERFAMILY SSF52540 46 204 2.7E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13450 18d089fbd1e8ee6164a3b1894bf5b109 71 Pfam PF07869 Protein of unknown function (DUF1656) 3 56 1.0E-11 T 13-10-2018 IPR012451 Protein of unknown function DUF1656 CDG55_00100 b60cdeb7ad20b815c1dcf83890fa073c 185 SUPERFAMILY SSF48498 101 165 3.78E-11 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CDG55_00100 b60cdeb7ad20b815c1dcf83890fa073c 185 Gene3D G3DSA:1.10.357.10 13 183 1.7E-34 T 13-10-2018 CDG55_00100 b60cdeb7ad20b815c1dcf83890fa073c 185 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 6.9E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_00100 b60cdeb7ad20b815c1dcf83890fa073c 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.9E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_00100 b60cdeb7ad20b815c1dcf83890fa073c 185 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.9E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_00100 b60cdeb7ad20b815c1dcf83890fa073c 185 SUPERFAMILY SSF46689 7 84 8.72E-16 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_13875 240b221f44641f3a802907fa03a19f56 433 Pfam PF01842 ACT domain 352 416 9.6E-12 T 13-10-2018 IPR002912 ACT domain CDG55_13875 240b221f44641f3a802907fa03a19f56 433 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 127 8.5E-20 T 13-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 CDG55_13875 240b221f44641f3a802907fa03a19f56 433 PIRSF PIRSF000098 1 431 3.2E-163 T 13-10-2018 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CDG55_13875 240b221f44641f3a802907fa03a19f56 433 Gene3D G3DSA:3.30.70.260 347 419 8.6E-161 T 13-10-2018 CDG55_13875 240b221f44641f3a802907fa03a19f56 433 SUPERFAMILY SSF55021 350 420 2.29E-11 T 13-10-2018 CDG55_13875 240b221f44641f3a802907fa03a19f56 433 SUPERFAMILY SSF51735 2 156 1.3E-34 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_13875 240b221f44641f3a802907fa03a19f56 433 SUPERFAMILY SSF55347 135 300 2.81E-54 T 13-10-2018 CDG55_13875 240b221f44641f3a802907fa03a19f56 433 Gene3D G3DSA:3.40.50.720 4 338 8.6E-161 T 13-10-2018 CDG55_13875 240b221f44641f3a802907fa03a19f56 433 Pfam PF00742 Homoserine dehydrogenase 135 313 6.5E-66 T 13-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 CDG55_13875 240b221f44641f3a802907fa03a19f56 433 Gene3D G3DSA:3.30.360.10 134 346 8.6E-161 T 13-10-2018 CDG55_10870 e201b142025f588af2f5ea138595e092 296 Pfam PF00549 CoA-ligase 153 271 4.5E-18 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDG55_10870 e201b142025f588af2f5ea138595e092 296 SUPERFAMILY SSF52210 125 289 1.31E-56 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDG55_10870 e201b142025f588af2f5ea138595e092 296 PRINTS PR01798 Succinyl-CoA synthase signature 242 259 2.9E-36 T 13-10-2018 CDG55_10870 e201b142025f588af2f5ea138595e092 296 PRINTS PR01798 Succinyl-CoA synthase signature 210 223 2.9E-36 T 13-10-2018 CDG55_10870 e201b142025f588af2f5ea138595e092 296 PRINTS PR01798 Succinyl-CoA synthase signature 179 197 2.9E-36 T 13-10-2018 CDG55_10870 e201b142025f588af2f5ea138595e092 296 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.9E-36 T 13-10-2018 CDG55_10870 e201b142025f588af2f5ea138595e092 296 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 290 42.894 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_10870 e201b142025f588af2f5ea138595e092 296 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 290 3.4E-137 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_10870 e201b142025f588af2f5ea138595e092 296 Gene3D G3DSA:3.40.50.261 126 291 1.6E-73 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDG55_10870 e201b142025f588af2f5ea138595e092 296 SUPERFAMILY SSF51735 1 124 7.06E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_10870 e201b142025f588af2f5ea138595e092 296 Pfam PF02629 CoA binding domain 6 99 5.0E-30 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CDG55_10870 e201b142025f588af2f5ea138595e092 296 SMART SM00881 4 100 1.5E-36 T 13-10-2018 IPR003781 CoA-binding GO:0048037 CDG55_10870 e201b142025f588af2f5ea138595e092 296 Gene3D G3DSA:3.40.50.720 1 125 5.7E-49 T 13-10-2018 CDG55_10870 e201b142025f588af2f5ea138595e092 296 PIRSF PIRSF001553 1 293 4.3E-129 T 13-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_14035 6a04d159898c2f07f40746fc037f3b06 156 Gene3D G3DSA:3.10.450.50 6 156 6.3E-55 T 13-10-2018 CDG55_14035 6a04d159898c2f07f40746fc037f3b06 156 Pfam PF02810 SEC-C motif 136 153 2.4E-8 T 13-10-2018 IPR004027 SEC-C motif CDG55_14035 6a04d159898c2f07f40746fc037f3b06 156 SUPERFAMILY SSF54427 26 129 1.49E-34 T 13-10-2018 IPR032710 NTF2-like domain superfamily CDG55_14035 6a04d159898c2f07f40746fc037f3b06 156 SUPERFAMILY SSF103642 133 155 4.09E-8 T 13-10-2018 CDG55_05450 ada017465f303f340564b60296c03141 327 Gene3D G3DSA:3.30.930.10 2 327 1.9E-93 T 13-10-2018 CDG55_05450 ada017465f303f340564b60296c03141 327 PRINTS PR00982 Lysyl-tRNA synthetase signature 32 42 5.7E-12 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_05450 ada017465f303f340564b60296c03141 327 PRINTS PR00982 Lysyl-tRNA synthetase signature 209 225 5.7E-12 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_05450 ada017465f303f340564b60296c03141 327 PRINTS PR00982 Lysyl-tRNA synthetase signature 80 93 5.7E-12 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_05450 ada017465f303f340564b60296c03141 327 PRINTS PR00982 Lysyl-tRNA synthetase signature 98 115 5.7E-12 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_05450 ada017465f303f340564b60296c03141 327 SUPERFAMILY SSF55681 13 324 1.36E-65 T 13-10-2018 CDG55_05450 ada017465f303f340564b60296c03141 327 Pfam PF00152 tRNA synthetases class II (D, K and N) 15 324 8.2E-40 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_05450 ada017465f303f340564b60296c03141 327 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 17 322 6.5E-117 T 13-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 CDG55_14615 ac63b5feaf2a1abf8977f4ebc2fbb796 478 Pfam PF00324 Amino acid permease 25 469 4.6E-105 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CDG55_14615 ac63b5feaf2a1abf8977f4ebc2fbb796 478 PIRSF PIRSF006060 5 476 9.9E-67 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CDG55_14615 ac63b5feaf2a1abf8977f4ebc2fbb796 478 Gene3D G3DSA:1.20.1740.10 16 478 3.5E-63 T 13-10-2018 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 481 781 1.4E-63 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 SUPERFAMILY SSF51621 460 790 2.88E-100 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 Gene3D G3DSA:3.50.30.10 357 476 6.8E-42 T 13-10-2018 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 PIRSF PIRSF000854 2 792 0.0 T 13-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 Gene3D G3DSA:3.20.20.60 477 789 4.8E-104 T 13-10-2018 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 6 786 0.0 T 13-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 Gene3D G3DSA:3.30.470.20 193 356 2.1E-57 T 13-10-2018 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 SUPERFAMILY SSF56059 4 383 2.0E-104 T 13-10-2018 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 Gene3D G3DSA:3.30.1490.20 2 192 1.7E-70 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 SUPERFAMILY SSF52009 347 466 6.41E-35 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 343 8.1E-116 T 13-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 CDG55_09670 d67911e2227d8c2f0bd85ee4110ce0b5 792 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 454 6.3E-26 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDG55_09495 32074ce6d06bb0899d4c689f434fffc5 2030 Gene3D G3DSA:2.60.40.1120 480 569 4.0E-5 T 13-10-2018 CDG55_09495 32074ce6d06bb0899d4c689f434fffc5 2030 SUPERFAMILY SSF56935 1636 1858 9.16E-5 T 13-10-2018 CDG55_09495 32074ce6d06bb0899d4c689f434fffc5 2030 Pfam PF01345 Domain of unknown function DUF11 619 706 1.6E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09495 32074ce6d06bb0899d4c689f434fffc5 2030 SUPERFAMILY SSF117074 749 805 5.23E-7 T 13-10-2018 CDG55_09495 32074ce6d06bb0899d4c689f434fffc5 2030 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 620 671 6.9E-14 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09495 32074ce6d06bb0899d4c689f434fffc5 2030 Pfam PF17210 SdrD B-like domain 751 806 1.7E-9 T 13-10-2018 IPR033764 SD-repeat containing protein, B domain CDG55_09495 32074ce6d06bb0899d4c689f434fffc5 2030 SUPERFAMILY SSF49464 481 552 8.63E-6 T 13-10-2018 IPR008969 Carboxypeptidase-like, regulatory domain superfamily CDG55_09495 32074ce6d06bb0899d4c689f434fffc5 2030 Gene3D G3DSA:2.60.40.10 748 848 7.4E-10 T 13-10-2018 IPR013783 Immunoglobulin-like fold CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 PIRSF PIRSF000485 1 483 3.2E-163 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 SUPERFAMILY SSF56235 2 257 4.72E-70 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 Pfam PF13522 Glutamine amidotransferase domain 65 207 7.4E-16 T 13-10-2018 CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 SUPERFAMILY SSF53271 250 485 3.36E-69 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 Gene3D G3DSA:3.40.50.2020 277 442 3.5E-148 T 13-10-2018 CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 Gene3D G3DSA:3.60.20.10 2 413 3.5E-148 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.502 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 466 2.4E-156 T 13-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 CDG55_07235 eecd2a5bfaeeabd07818ac5b4fa9f127 512 Pfam PF00156 Phosphoribosyl transferase domain 275 394 1.3E-9 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDG55_09715 6207785dff37d1d51b3b539e41d24c2d 127 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 20.466 T 13-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDG55_09715 6207785dff37d1d51b3b539e41d24c2d 127 Pfam PF01250 Ribosomal protein S6 3 91 1.2E-24 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09715 6207785dff37d1d51b3b539e41d24c2d 127 SUPERFAMILY SSF54995 1 101 1.96E-35 T 13-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09715 6207785dff37d1d51b3b539e41d24c2d 127 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 94 5.6E-33 T 13-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09715 6207785dff37d1d51b3b539e41d24c2d 127 Gene3D G3DSA:3.30.70.60 1 92 3.3E-29 T 13-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CDG55_08750 0bc72509e23363005c7146362eea09ff 295 Pfam PF01925 Sulfite exporter TauE/SafE 7 264 1.6E-49 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 Gene3D G3DSA:3.40.50.620 1 309 7.1E-135 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 SUPERFAMILY SSF52374 6 316 1.25E-96 T 13-10-2018 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 63 72 1.2E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 27 38 1.2E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 226 247 1.2E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 195 213 1.2E-30 T 13-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 5 471 2.4E-175 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 Pfam PF09190 DALR domain 349 411 1.7E-20 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 SMART SM00840 349 411 6.5E-21 T 13-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 317 4.1E-132 T 13-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 4 472 38.347 T 13-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 SUPERFAMILY SSF47323 328 471 2.35E-34 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_06270 c9cb3f5470fd4627c55b2cb19f0a8f67 473 Gene3D G3DSA:1.20.120.640 311 472 3.2E-40 T 13-10-2018 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 Gene3D G3DSA:3.40.50.1480 148 203 6.5E-21 T 13-10-2018 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 Gene3D G3DSA:3.40.50.1480 370 460 4.3E-29 T 13-10-2018 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 SUPERFAMILY SSF52283 8 460 3.85E-108 T 13-10-2018 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 10 147 1.8E-72 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 197 372 5.4E-58 T 13-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 11 452 1.3E-156 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 SMART SM00996 10 459 2.2E-274 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 SMART SM00997 197 372 1.2E-84 T 13-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 6 452 45.033 T 13-10-2018 IPR034373 Adenosylhomocysteinase GO:0004013|GO:0019510|GO:0051287 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-2408508|Reactome: R-HSA-5578997 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 PIRSF PIRSF001109 1 460 8.4E-179 T 13-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 Gene3D G3DSA:3.40.50.1480 1 147 1.2E-69 T 13-10-2018 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 Gene3D G3DSA:3.40.50.720 204 369 5.8E-68 T 13-10-2018 CDG55_09955 0527f8d1e1d09c5395e3d319c770258a 460 SUPERFAMILY SSF51735 197 373 1.11E-52 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_12035 8dd769970ebd76bee21e02002fc55d41 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 1.4E-11 T 13-10-2018 IPR003849 Preprotein translocase YajC CDG55_12035 8dd769970ebd76bee21e02002fc55d41 109 PRINTS PR01853 Bacterial YajC preprotein translocase signature 41 59 1.4E-11 T 13-10-2018 IPR003849 Preprotein translocase YajC CDG55_12035 8dd769970ebd76bee21e02002fc55d41 109 Pfam PF02699 Preprotein translocase subunit 24 97 9.6E-25 T 13-10-2018 IPR003849 Preprotein translocase YajC CDG55_12035 8dd769970ebd76bee21e02002fc55d41 109 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 20 101 2.2E-24 T 13-10-2018 IPR003849 Preprotein translocase YajC CDG55_12035 8dd769970ebd76bee21e02002fc55d41 109 SMART SM01323 19 101 3.0E-35 T 13-10-2018 IPR003849 Preprotein translocase YajC CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 8.2E-46 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 122 24.68 T 13-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 SUPERFAMILY SSF54736 51 122 2.09E-25 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 Gene3D G3DSA:1.20.5.710 2 51 4.7E-19 T 13-10-2018 CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 2.1E-31 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 58 93 5.0E-13 T 13-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 5.1E-16 T 13-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 SUPERFAMILY SSF48300 4 58 1.57E-14 T 13-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13665 5cc27265859832a82ca6131ed3240ed8 122 Gene3D G3DSA:3.30.1390.10 52 122 1.0E-32 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 740 750 5.7E-25 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 594 608 5.7E-25 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 443 457 5.7E-25 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 793 812 5.7E-25 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 816 828 5.7E-25 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Gene3D G3DSA:3.40.50.1000 575 843 2.7E-78 T 13-10-2018 IPR023214 HAD superfamily CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 SMART SM00746 22 59 3.1E-5 T 13-10-2018 IPR011017 TRASH domain CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 SMART SM00746 156 193 1.7E-10 T 13-10-2018 IPR011017 TRASH domain CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Gene3D G3DSA:2.70.150.20 381 497 6.3E-36 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Gene3D G3DSA:3.40.1110.10 605 725 2.7E-78 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00943 Copper-transporting ATPase signature 516 530 1.2E-9 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00943 Copper-transporting ATPase signature 363 382 1.2E-9 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00943 Copper-transporting ATPase signature 383 401 1.2E-9 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00943 Copper-transporting ATPase signature 577 592 1.2E-9 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 PRINTS PR00943 Copper-transporting ATPase signature 770 787 1.2E-9 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 SUPERFAMILY SSF81665 333 888 1.11E-15 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 SUPERFAMILY SSF81653 396 493 6.67E-25 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 302 902 2.7E-164 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Pfam PF00122 E1-E2 ATPase 394 574 2.3E-52 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 323 902 3.5E-177 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 SUPERFAMILY SSF47240 155 196 4.87E-6 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Pfam PF04945 YHS domain 155 197 6.0E-16 T 13-10-2018 IPR007029 YHS domain CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Pfam PF04945 YHS domain 21 64 1.6E-14 T 13-10-2018 IPR007029 YHS domain CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Pfam PF00702 haloacid dehalogenase-like hydrolase 590 807 1.2E-35 T 13-10-2018 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 SUPERFAMILY SSF47240 15 62 8.65E-6 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 365 872 1.3E-84 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 SUPERFAMILY SSF56784 592 900 8.25E-52 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Gene3D G3DSA:1.10.620.20 3 93 5.9E-6 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 CDG55_05840 320d575c5cf260afb0f928d0ead32fc8 905 Gene3D G3DSA:1.10.620.20 133 204 1.5E-6 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 Pfam PF01037 Lrp/AsnC ligand binding domain 74 147 9.3E-19 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 Gene3D G3DSA:1.10.10.10 2 61 2.3E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 SUPERFAMILY SSF46785 6 66 2.35E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 Pfam PF13404 AsnC-type helix-turn-helix domain 8 48 3.9E-17 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 SMART SM00344 8 117 6.9E-41 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 SUPERFAMILY SSF54909 70 153 7.91E-19 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 Gene3D G3DSA:3.30.70.920 62 145 1.2E-19 T 13-10-2018 CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 2.8E-12 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 2.8E-12 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_07760 3a9727dbc4cfeccef488a320b5105553 163 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 2.8E-12 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_11570 af813164437cf1a2ac4cc0fc9e01af86 142 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 4 141 1.9E-43 T 13-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L CDG55_11570 af813164437cf1a2ac4cc0fc9e01af86 142 SUPERFAMILY SSF81330 12 137 2.48E-34 T 13-10-2018 IPR036019 Gated mechanosensitive channel CDG55_11570 af813164437cf1a2ac4cc0fc9e01af86 142 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 141 1.5E-36 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CDG55_11570 af813164437cf1a2ac4cc0fc9e01af86 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 8.3E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CDG55_11570 af813164437cf1a2ac4cc0fc9e01af86 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 94 102 8.3E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CDG55_11570 af813164437cf1a2ac4cc0fc9e01af86 142 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 103 112 8.3E-11 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CDG55_11570 af813164437cf1a2ac4cc0fc9e01af86 142 Gene3D G3DSA:1.10.1200.120 3 142 1.3E-41 T 13-10-2018 IPR036019 Gated mechanosensitive channel CDG55_11570 af813164437cf1a2ac4cc0fc9e01af86 142 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 142 23.484 T 13-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 CDG55_00070 3e331aa6fc613159099c6eaf91f96995 135 Gene3D G3DSA:3.30.160.250 1 85 1.4E-22 T 13-10-2018 CDG55_00070 3e331aa6fc613159099c6eaf91f96995 135 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 3 126 1.9E-44 T 13-10-2018 IPR031807 HicB-like antitoxin of toxin-antitoxin system CDG55_00070 3e331aa6fc613159099c6eaf91f96995 135 SUPERFAMILY SSF143100 3 67 7.98E-18 T 13-10-2018 IPR035069 TTHA1013/TTHA0281-like CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 Pfam PF00390 Malic enzyme, N-terminal domain 82 262 1.5E-75 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 PIRSF PIRSF000106 3 564 7.9E-225 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 SMART SM00919 272 532 7.8E-123 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 PRINTS PR00072 Malic enzyme signature 88 112 6.0E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 PRINTS PR00072 Malic enzyme signature 268 284 6.0E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 PRINTS PR00072 Malic enzyme signature 409 425 6.0E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 PRINTS PR00072 Malic enzyme signature 243 261 6.0E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 PRINTS PR00072 Malic enzyme signature 148 177 6.0E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 PRINTS PR00072 Malic enzyme signature 184 206 6.0E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 PRINTS PR00072 Malic enzyme signature 299 315 6.0E-73 T 13-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 Gene3D G3DSA:3.40.50.10380 17 269 1.4E-112 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 Pfam PF03949 Malic enzyme, NAD binding domain 272 531 8.6E-100 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 SUPERFAMILY SSF51735 272 564 1.93E-94 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 SUPERFAMILY SSF53223 8 271 1.8E-106 T 13-10-2018 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 SMART SM01274 82 262 3.1E-99 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDG55_10670 d70a3b2a5208b0a0ac02cf4d00299eea 566 Gene3D G3DSA:3.40.50.720 270 566 1.4E-106 T 13-10-2018 CDG55_03075 c0be453f12ea1e455c71fa6910c37fef 258 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 44 229 1.1E-72 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CDG55_03075 c0be453f12ea1e455c71fa6910c37fef 258 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 49 233 26.712 T 13-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 CDG55_03075 c0be453f12ea1e455c71fa6910c37fef 258 Gene3D G3DSA:3.40.50.300 38 234 6.7E-49 T 13-10-2018 CDG55_03075 c0be453f12ea1e455c71fa6910c37fef 258 Pfam PF01926 50S ribosome-binding GTPase 63 179 8.5E-18 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_03075 c0be453f12ea1e455c71fa6910c37fef 258 SUPERFAMILY SSF52540 54 241 9.59E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14905 9a20c9e6a24be6e8639fb2109d0f7dae 391 Gene3D G3DSA:3.20.20.30 1 363 4.0E-142 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 CDG55_14905 9a20c9e6a24be6e8639fb2109d0f7dae 391 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 1 381 78.399 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 CDG55_14905 9a20c9e6a24be6e8639fb2109d0f7dae 391 SUPERFAMILY SSF51679 1 351 2.88E-93 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 CDG55_14905 9a20c9e6a24be6e8639fb2109d0f7dae 391 Pfam PF00296 Luciferase-like monooxygenase 1 327 6.5E-85 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDG55_14905 9a20c9e6a24be6e8639fb2109d0f7dae 391 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 2 351 9.3E-189 T 13-10-2018 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 CDG55_13440 d2bf8c8f40379df9dde6a4e6198f15fe 147 SMART SM00732 8 108 1.2E-26 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CDG55_13440 d2bf8c8f40379df9dde6a4e6198f15fe 147 SUPERFAMILY SSF53098 8 140 2.43E-35 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_13440 d2bf8c8f40379df9dde6a4e6198f15fe 147 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 11 139 4.3E-34 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CDG55_13440 d2bf8c8f40379df9dde6a4e6198f15fe 147 Pfam PF03652 Holliday junction resolvase 9 139 5.4E-36 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CDG55_13440 d2bf8c8f40379df9dde6a4e6198f15fe 147 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 8 143 21.29 T 13-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 CDG55_13440 d2bf8c8f40379df9dde6a4e6198f15fe 147 Gene3D G3DSA:3.30.420.140 6 141 1.4E-36 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 CDG55_06550 68bd6a665c88bd909038d1a4d02fdab9 309 SUPERFAMILY SSF53850 90 300 9.59E-36 T 13-10-2018 CDG55_06550 68bd6a665c88bd909038d1a4d02fdab9 309 Gene3D G3DSA:1.10.10.10 3 90 4.9E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_06550 68bd6a665c88bd909038d1a4d02fdab9 309 Gene3D G3DSA:3.40.190.290 92 297 1.6E-47 T 13-10-2018 CDG55_06550 68bd6a665c88bd909038d1a4d02fdab9 309 SUPERFAMILY SSF46785 5 89 2.4E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_06550 68bd6a665c88bd909038d1a4d02fdab9 309 Pfam PF03466 LysR substrate binding domain 90 296 1.9E-30 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_06550 68bd6a665c88bd909038d1a4d02fdab9 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 6.5E-21 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 SMART SM00448 1 115 4.6E-26 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 1.4E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 1.4E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 1.4E-11 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 Pfam PF00072 Response regulator receiver domain 3 115 2.3E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 204 1.2E-19 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 SUPERFAMILY SSF52172 1 181 1.96E-29 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 SMART SM00421 149 206 8.1E-23 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_01950 f294d9b0f00f91553442b108a9781d53 216 Gene3D G3DSA:3.40.50.12740 1 210 4.3E-54 T 13-10-2018 CDG55_08940 aea824a2e0af5ba09419dba3a1ee2a2d 249 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 9 236 1.5E-83 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CDG55_08940 aea824a2e0af5ba09419dba3a1ee2a2d 249 Pfam PF01255 Putative undecaprenyl diphosphate synthase 16 236 1.8E-72 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CDG55_08940 aea824a2e0af5ba09419dba3a1ee2a2d 249 SUPERFAMILY SSF64005 9 232 7.98E-79 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 CDG55_08940 aea824a2e0af5ba09419dba3a1ee2a2d 249 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 9 237 36.079 T 13-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 CDG55_08940 aea824a2e0af5ba09419dba3a1ee2a2d 249 Gene3D G3DSA:3.40.1180.10 2 237 1.8E-87 T 13-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 CDG55_10125 15900a94eb2d1e5e8a8cf69c25bc297c 270 Gene3D G3DSA:3.30.470.10 3 110 8.7E-19 T 13-10-2018 CDG55_10125 15900a94eb2d1e5e8a8cf69c25bc297c 270 Gene3D G3DSA:3.20.10.10 124 264 1.6E-38 T 13-10-2018 CDG55_10125 15900a94eb2d1e5e8a8cf69c25bc297c 270 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 6 262 2.1E-66 T 13-10-2018 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 CDG55_10125 15900a94eb2d1e5e8a8cf69c25bc297c 270 SUPERFAMILY SSF56752 3 261 7.06E-52 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 CDG55_10125 15900a94eb2d1e5e8a8cf69c25bc297c 270 Pfam PF01063 Amino-transferase class IV 25 244 6.8E-40 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 CDG55_05895 8b1335a6de4efb8a94582fb15495f662 213 Gene3D G3DSA:1.20.1510.10 77 201 3.5E-5 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_05895 8b1335a6de4efb8a94582fb15495f662 213 SUPERFAMILY SSF161111 19 199 2.62E-32 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_05895 8b1335a6de4efb8a94582fb15495f662 213 Pfam PF01545 Cation efflux family 24 195 3.0E-9 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 4.0E-15 T 13-10-2018 IPR004176 Clp, N-terminal CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Gene3D G3DSA:3.40.50.300 438 650 1.6E-80 T 13-10-2018 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 561 579 2.2E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 490 508 2.2E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 532 550 2.2E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 608 2.2E-38 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Gene3D G3DSA:3.40.50.300 167 355 1.7E-64 T 13-10-2018 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 211 306 7.0E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 SUPERFAMILY SSF81923 1 141 9.81E-49 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Gene3D G3DSA:1.10.1780.10 1 143 1.8E-38 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 657 732 4.9E-22 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 734 0.0 T 13-10-2018 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0016887|GO:0043335 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 SUPERFAMILY SSF52540 436 735 7.19E-76 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 SMART SM01086 652 747 1.0E-24 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Gene3D G3DSA:1.10.8.60 356 437 2.5E-31 T 13-10-2018 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Pfam PF07724 AAA domain (Cdc48 subfamily) 485 644 2.1E-47 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 SUPERFAMILY SSF52540 168 412 1.41E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 SMART SM00382 206 352 3.1E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 SMART SM00382 486 653 1.2E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_08435 6c4355f501ca286a76a6f6ecfa8ba7e0 761 Gene3D G3DSA:1.10.8.60 652 752 1.3E-26 T 13-10-2018 CDG55_04225 f2f5eee223cb0ecbd5e40e5ab45a86d2 354 Gene3D G3DSA:3.40.50.10800 41 329 1.2E-97 T 13-10-2018 CDG55_04225 f2f5eee223cb0ecbd5e40e5ab45a86d2 354 Gene3D G3DSA:3.40.50.10800 209 304 1.2E-97 T 13-10-2018 CDG55_04225 f2f5eee223cb0ecbd5e40e5ab45a86d2 354 Gene3D G3DSA:3.40.50.10800 124 346 1.2E-97 T 13-10-2018 CDG55_04225 f2f5eee223cb0ecbd5e40e5ab45a86d2 354 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 40 349 2.1E-114 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDG55_04225 f2f5eee223cb0ecbd5e40e5ab45a86d2 354 Pfam PF02445 Quinolinate synthetase A protein 41 347 7.5E-106 T 13-10-2018 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDG55_04225 f2f5eee223cb0ecbd5e40e5ab45a86d2 354 SUPERFAMILY SSF142754 38 348 3.4E-110 T 13-10-2018 IPR036094 Quinolinate synthetase A superfamily GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDG55_04225 f2f5eee223cb0ecbd5e40e5ab45a86d2 354 Hamap MF_00567 Quinolinate synthase A [nadA]. 8 354 67.862 T 13-10-2018 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 CDG55_11050 07dff9f4a4453ecad8263773a57d2442 325 Gene3D G3DSA:1.10.600.10 1 325 5.7E-108 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CDG55_11050 07dff9f4a4453ecad8263773a57d2442 325 SUPERFAMILY SSF48576 6 323 1.5E-96 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CDG55_11050 07dff9f4a4453ecad8263773a57d2442 325 Pfam PF00348 Polyprenyl synthetase 36 272 2.3E-72 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 CDG55_11175 49cc1935cdc4a56629f4ce9ad0268b7d 208 SMART SM00563 46 158 1.3E-16 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_11175 49cc1935cdc4a56629f4ce9ad0268b7d 208 SUPERFAMILY SSF69593 12 159 3.14E-18 T 13-10-2018 CDG55_11175 49cc1935cdc4a56629f4ce9ad0268b7d 208 Pfam PF01553 Acyltransferase 45 151 1.0E-7 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 393 572 1.7E-71 T 13-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 Pfam PF02096 60Kd inner membrane protein 394 572 1.9E-61 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR00701 60kDa inner membrane protein signature 455 478 2.4E-68 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR00701 60kDa inner membrane protein signature 249 267 2.4E-68 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR00701 60kDa inner membrane protein signature 364 384 2.4E-68 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR00701 60kDa inner membrane protein signature 538 561 2.4E-68 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR00701 60kDa inner membrane protein signature 3 24 2.4E-68 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR00701 60kDa inner membrane protein signature 90 111 2.4E-68 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR00701 60kDa inner membrane protein signature 502 524 2.4E-68 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR00701 60kDa inner membrane protein signature 282 297 2.4E-68 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 5 574 23.436 T 13-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 Gene3D G3DSA:2.70.98.90 81 373 5.3E-100 T 13-10-2018 IPR038221 YidC, periplasmic domain superfamily CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR01900 YidC translocation/secretion protein signature 379 395 8.6E-24 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR01900 YidC translocation/secretion protein signature 527 551 8.6E-24 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 PRINTS PR01900 YidC translocation/secretion protein signature 508 523 8.6E-24 T 13-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 Pfam PF14849 YidC periplasmic domain 85 381 2.6E-71 T 13-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain CDG55_15155 fe48c48b2640b2af3fb2cb89d2c28e22 586 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 5 392 8.0E-105 T 13-10-2018 IPR028053 Membrane insertase YidC, N-terminal CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.5E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 Gene3D G3DSA:3.40.50.720 1 274 5.8E-68 T 13-10-2018 CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 SUPERFAMILY SSF51735 1 270 4.09E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 5.9E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 5.9E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 5.9E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 5.9E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 5.9E-23 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_01590 a3ec65722d2664964cad0c0ff18a144a 275 Pfam PF00106 short chain dehydrogenase 7 199 1.3E-46 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 257 5.6E-77 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 PIRSF PIRSF010376 1 272 6.3E-79 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 Pfam PF08544 GHMP kinases C terminal 204 255 1.1E-5 T 13-10-2018 IPR013750 GHMP kinase, C-terminal domain CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 2 262 30.703 T 13-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 SUPERFAMILY SSF55060 157 258 1.77E-21 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 SUPERFAMILY SSF54211 1 154 2.96E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 Gene3D G3DSA:3.30.70.890 158 275 6.4E-20 T 13-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 Pfam PF00288 GHMP kinases N terminal domain 84 140 6.0E-10 T 13-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 CDG55_04810 a0c435794543ba7f3111d2e0d5110b59 277 Gene3D G3DSA:3.30.230.10 1 155 2.5E-57 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 4 349 5.6E-126 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 SUPERFAMILY SSF51735 4 164 2.46E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 140 2.6E-38 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 Gene3D G3DSA:3.40.50.720 4 334 2.4E-125 T 13-10-2018 CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 343 41.841 T 13-10-2018 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 158 320 3.6E-18 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 SMART SM00859 3 141 7.8E-54 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 SUPERFAMILY SSF55347 149 317 2.8E-46 T 13-10-2018 CDG55_08415 d55848865d4cb14e10b17b7a4e43a196 349 Gene3D G3DSA:3.30.360.10 147 317 2.4E-125 T 13-10-2018 CDG55_04730 b517edc28f5b09c5a832dbc9c00a429a 330 SUPERFAMILY SSF55048 139 204 1.31E-12 T 13-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CDG55_04730 b517edc28f5b09c5a832dbc9c00a429a 330 SUPERFAMILY SSF52151 15 321 3.4E-71 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CDG55_04730 b517edc28f5b09c5a832dbc9c00a429a 330 Gene3D G3DSA:3.30.70.250 134 209 3.8E-93 T 13-10-2018 CDG55_04730 b517edc28f5b09c5a832dbc9c00a429a 330 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 18 327 5.9E-40 T 13-10-2018 IPR020801 Polyketide synthase, acyl transferase domain CDG55_04730 b517edc28f5b09c5a832dbc9c00a429a 330 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 14 300 2.0E-99 T 13-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CDG55_04730 b517edc28f5b09c5a832dbc9c00a429a 330 Pfam PF00698 Acyl transferase domain 17 291 1.8E-34 T 13-10-2018 IPR014043 Acyl transferase CDG55_04730 b517edc28f5b09c5a832dbc9c00a429a 330 PIRSF PIRSF000446 12 323 2.6E-104 T 13-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 CDG55_04730 b517edc28f5b09c5a832dbc9c00a429a 330 Gene3D G3DSA:3.40.366.10 17 298 3.8E-93 T 13-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 SUPERFAMILY SSF46785 2 83 4.69E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 Pfam PF03466 LysR substrate binding domain 97 304 2.8E-16 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 Gene3D G3DSA:1.10.10.10 1 86 3.8E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 5.9E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 Gene3D G3DSA:3.40.190.10 170 279 1.5E-60 T 13-10-2018 CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 Gene3D G3DSA:3.40.190.10 92 303 1.5E-60 T 13-10-2018 CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_06250 c565cc9af627da3cfef23f5c7c1c7440 329 SUPERFAMILY SSF53850 90 305 1.11E-35 T 13-10-2018 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 SUPERFAMILY SSF50249 15 157 7.59E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 389 405 9.8E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 217 233 9.8E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 246 259 9.8E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 201 211 9.8E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 PRINTS PR00982 Lysyl-tRNA synthetase signature 264 281 9.8E-39 T 13-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 507 43.556 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 Gene3D G3DSA:2.40.50.140 8 159 1.6E-32 T 13-10-2018 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 Gene3D G3DSA:3.30.930.10 160 508 2.9E-127 T 13-10-2018 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 SUPERFAMILY SSF55681 164 505 1.65E-114 T 13-10-2018 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 Pfam PF00152 tRNA synthetases class II (D, K and N) 165 504 5.9E-79 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 Pfam PF01336 OB-fold nucleic acid binding domain 75 148 4.0E-10 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CDG55_06220 3178d720e2b9f859d641c1d849ef602d 508 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 19 506 2.0E-199 T 13-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_09025 03f1805ee33af523a199d5349cd47433 94 Gene3D G3DSA:3.40.1260.10 4 92 3.9E-5 T 13-10-2018 IPR027396 DsrEFH-like CDG55_09025 03f1805ee33af523a199d5349cd47433 94 SUPERFAMILY SSF75169 5 92 1.57E-7 T 13-10-2018 IPR027396 DsrEFH-like CDG55_03925 266b98007c71a9427d3da6366765c044 98 SMART SM00411 4 93 2.0E-37 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_03925 266b98007c71a9427d3da6366765c044 98 Gene3D G3DSA:4.10.520.10 2 97 2.4E-34 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CDG55_03925 266b98007c71a9427d3da6366765c044 98 PRINTS PR01727 Prokaryotic integration host factor signature 61 74 3.1E-16 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_03925 266b98007c71a9427d3da6366765c044 98 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 3.1E-16 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_03925 266b98007c71a9427d3da6366765c044 98 PRINTS PR01727 Prokaryotic integration host factor signature 77 91 3.1E-16 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_03925 266b98007c71a9427d3da6366765c044 98 SUPERFAMILY SSF47729 4 94 1.3E-30 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CDG55_03925 266b98007c71a9427d3da6366765c044 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 3 95 2.4E-43 T 13-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 CDG55_03925 266b98007c71a9427d3da6366765c044 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 2 98 29.398 T 13-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 CDG55_03925 266b98007c71a9427d3da6366765c044 98 Pfam PF00216 Bacterial DNA-binding protein 4 92 4.0E-30 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_12405 cee27147d86c1ff95b309afd56f1b55e 254 SUPERFAMILY SSF74653 154 254 1.05E-12 T 13-10-2018 CDG55_12405 cee27147d86c1ff95b309afd56f1b55e 254 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 194 253 3.1E-13 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 CDG55_12405 cee27147d86c1ff95b309afd56f1b55e 254 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 193 254 1.4E-12 T 13-10-2018 IPR006260 TonB/TolA, C-terminal CDG55_12405 cee27147d86c1ff95b309afd56f1b55e 254 Gene3D G3DSA:3.30.1150.10 131 254 7.8E-13 T 13-10-2018 CDG55_08585 8f0cf272a26e2c5269f925ebc71a1d19 163 SMART SM00903 11 156 2.2E-52 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CDG55_08585 8f0cf272a26e2c5269f925ebc71a1d19 163 SUPERFAMILY SSF50475 6 159 1.62E-47 T 13-10-2018 CDG55_08585 8f0cf272a26e2c5269f925ebc71a1d19 163 Gene3D G3DSA:2.30.110.10 1 161 1.7E-48 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CDG55_08585 8f0cf272a26e2c5269f925ebc71a1d19 163 Pfam PF01613 Flavin reductase like domain 11 158 2.2E-35 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 2 1212 14.085 T 13-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 3 881 2.1E-183 T 13-10-2018 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 PIRSF PIRSF000980 2 1200 9.9E-151 T 13-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 SUPERFAMILY SSF52540 3 406 4.57E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 Gene3D G3DSA:1.10.486.10 509 728 3.5E-109 T 13-10-2018 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 Gene3D G3DSA:3.40.50.300 395 882 3.5E-109 T 13-10-2018 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 Gene3D G3DSA:3.40.50.10930 2 107 3.0E-11 T 13-10-2018 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 SUPERFAMILY SSF52980 904 1209 1.98E-34 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 Gene3D G3DSA:3.40.50.10930 184 386 4.4E-32 T 13-10-2018 CDG55_13255 515d970428cdbcf340e5757d2199f850 1212 SUPERFAMILY SSF52540 416 890 3.51E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03540 74cd6225d805ed65b33eaee43f9c6c4c 407 Gene3D G3DSA:3.30.70.270 230 401 1.1E-49 T 13-10-2018 CDG55_03540 74cd6225d805ed65b33eaee43f9c6c4c 407 Pfam PF17152 Periplasmic sensor domain 43 141 1.9E-16 T 13-10-2018 IPR033417 Periplasmic sensor domain CHASE8 CDG55_03540 74cd6225d805ed65b33eaee43f9c6c4c 407 SMART SM00267 234 403 1.6E-53 T 13-10-2018 IPR000160 GGDEF domain CDG55_03540 74cd6225d805ed65b33eaee43f9c6c4c 407 SUPERFAMILY SSF55073 250 401 7.61E-43 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_03540 74cd6225d805ed65b33eaee43f9c6c4c 407 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 242 395 4.2E-38 T 13-10-2018 IPR000160 GGDEF domain CDG55_03540 74cd6225d805ed65b33eaee43f9c6c4c 407 Pfam PF00990 Diguanylate cyclase, GGDEF domain 245 395 8.6E-45 T 13-10-2018 IPR000160 GGDEF domain CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 Gene3D G3DSA:3.20.20.60 433 751 5.2E-97 T 13-10-2018 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 184 735 1.0E-125 T 13-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 Pfam PF13185 GAF domain 21 158 2.7E-15 T 13-10-2018 IPR003018 GAF domain GO:0005515 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 431 718 1.9E-92 T 13-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 SUPERFAMILY SSF51621 432 726 1.52E-96 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 SUPERFAMILY SSF55781 4 162 8.29E-33 T 13-10-2018 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 Gene3D G3DSA:1.10.274.10 201 325 4.0E-58 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 Gene3D G3DSA:3.30.450.40 2 168 2.7E-48 T 13-10-2018 IPR029016 GAF-like domain superfamily CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 Pfam PF00391 PEP-utilising enzyme, mobile domain 331 403 1.1E-16 T 13-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 Gene3D G3DSA:3.50.30.10 184 411 4.0E-58 T 13-10-2018 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 SUPERFAMILY SSF52009 304 424 1.44E-26 T 13-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 SMART SM00065 21 168 8.7E-25 T 13-10-2018 IPR003018 GAF domain GO:0005515 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 Pfam PF05524 PEP-utilising enzyme, N-terminal 183 305 5.5E-22 T 13-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 678 690 9.0E-23 T 13-10-2018 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 471 490 9.0E-23 T 13-10-2018 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 625 640 9.0E-23 T 13-10-2018 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 642 657 9.0E-23 T 13-10-2018 CDG55_12940 c15a4a11ae97c64969efceead4a3217c 764 SUPERFAMILY SSF47831 209 320 8.24E-26 T 13-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 Gene3D G3DSA:2.40.37.10 9 361 5.7E-109 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 SMART SM01005 237 366 1.4E-56 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 Pfam PF00842 Alanine racemase, C-terminal domain 238 362 9.0E-38 T 13-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 195 222 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 155 166 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 121 133 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 348 361 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 270 285 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 61 79 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 253 268 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 291 308 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 PRINTS PR00992 Alanine racemase signature 27 43 8.8E-59 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 SUPERFAMILY SSF51419 9 238 6.69E-61 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 Gene3D G3DSA:3.20.20.10 11 220 5.7E-109 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 SUPERFAMILY SSF50621 231 364 9.77E-41 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 Hamap MF_01201 Alanine racemase. 2 366 32.131 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 TIGRFAM TIGR00492 alr: alanine racemase 3 364 9.5E-108 T 13-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_14625 7034dc37c32ab0515bfcf04509883137 367 Pfam PF01168 Alanine racemase, N-terminal domain 9 222 3.4E-64 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 SUPERFAMILY SSF53218 181 330 5.76E-32 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 11 171 1.1E-29 T 13-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 Pfam PF00994 Probable molybdopterin binding domain 184 319 1.9E-24 T 13-10-2018 IPR001453 MoaB/Mog domain CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 Pfam PF03454 MoeA C-terminal region (domain IV) 339 400 1.6E-11 T 13-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 SUPERFAMILY SSF63867 334 401 1.44E-10 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 Gene3D G3DSA:2.40.340.10 335 399 2.6E-100 T 13-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 Gene3D G3DSA:3.90.105.10 29 178 2.6E-100 T 13-10-2018 CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 SUPERFAMILY SSF63882 9 179 1.96E-41 T 13-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 Gene3D G3DSA:3.40.980.10 179 334 2.6E-100 T 13-10-2018 IPR036425 MoaB/Mog-like domain superfamily CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 SMART SM00852 184 325 2.2E-28 T 13-10-2018 IPR001453 MoaB/Mog domain CDG55_09040 4bc0662df657ee8ccc95e47f5b9b89a8 408 Gene3D G3DSA:2.170.190.11 53 145 2.6E-100 T 13-10-2018 CDG55_14925 7c25bd684feec6c2166c6d8ed2f766b4 300 Pfam PF00990 Diguanylate cyclase, GGDEF domain 141 296 4.7E-44 T 13-10-2018 IPR000160 GGDEF domain CDG55_14925 7c25bd684feec6c2166c6d8ed2f766b4 300 SUPERFAMILY SSF55073 144 298 1.57E-44 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_14925 7c25bd684feec6c2166c6d8ed2f766b4 300 SUPERFAMILY SSF55785 5 83 4.45E-5 T 13-10-2018 IPR035965 PAS domain superfamily CDG55_14925 7c25bd684feec6c2166c6d8ed2f766b4 300 Gene3D G3DSA:3.30.70.270 136 300 1.5E-51 T 13-10-2018 CDG55_14925 7c25bd684feec6c2166c6d8ed2f766b4 300 SMART SM00267 128 300 4.2E-53 T 13-10-2018 IPR000160 GGDEF domain CDG55_14925 7c25bd684feec6c2166c6d8ed2f766b4 300 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 140 298 1.3E-49 T 13-10-2018 IPR000160 GGDEF domain CDG55_14925 7c25bd684feec6c2166c6d8ed2f766b4 300 Gene3D G3DSA:3.30.450.20 3 135 3.7E-5 T 13-10-2018 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Gene3D G3DSA:2.40.30.10 806 903 7.0E-29 T 13-10-2018 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 328 377 2.2E-12 T 13-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Gene3D G3DSA:3.40.50.300 402 575 1.1E-70 T 13-10-2018 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 SUPERFAMILY SSF52540 399 573 3.47E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13355 fe8313c11bef54ced1189091748f7809 904 SUPERFAMILY SSF52156 682 811 5.36E-35 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CDG55_13355 fe8313c11bef54ced1189091748f7809 904 SUPERFAMILY SSF50447 806 902 7.66E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Pfam PF00009 Elongation factor Tu GTP binding domain 409 564 2.7E-34 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Gene3D G3DSA:3.30.56.50 2 51 1.9E-6 T 13-10-2018 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 62 98 4.2E-10 T 13-10-2018 IPR013575 Initiation factor 2 associated domain, bacterial CDG55_13355 fe8313c11bef54ced1189091748f7809 904 SUPERFAMILY SSF46955 3 51 4.94E-8 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_13355 fe8313c11bef54ced1189091748f7809 904 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 406 563 1.1E-32 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 323 904 6.6E-247 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 902 16.764 T 13-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Pfam PF11987 Translation-initiation factor 2 689 794 1.5E-35 T 13-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 SUPERFAMILY SSF50447 577 660 1.66E-23 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Gene3D G3DSA:2.40.30.10 576 693 1.5E-39 T 13-10-2018 CDG55_13355 fe8313c11bef54ced1189091748f7809 904 Gene3D G3DSA:3.40.50.10050 698 805 1.4E-35 T 13-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CDG55_09155 7cff89fd84660e9099dc1ed4bd6b3678 147 Gene3D G3DSA:3.10.129.10 1 142 4.8E-47 T 13-10-2018 CDG55_09155 7cff89fd84660e9099dc1ed4bd6b3678 147 Pfam PF13279 Thioesterase-like superfamily 21 137 4.6E-13 T 13-10-2018 CDG55_09155 7cff89fd84660e9099dc1ed4bd6b3678 147 SUPERFAMILY SSF54637 10 143 2.49E-36 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_13670 5033f1d15b012159a56523d04eb9702c 168 Gene3D G3DSA:3.30.70.1730 1 126 8.1E-31 T 13-10-2018 CDG55_13670 5033f1d15b012159a56523d04eb9702c 168 Pfam PF00466 Ribosomal protein L10 6 103 3.4E-24 T 13-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 CDG55_13670 5033f1d15b012159a56523d04eb9702c 168 SUPERFAMILY SSF160369 5 162 2.62E-43 T 13-10-2018 CDG55_13670 5033f1d15b012159a56523d04eb9702c 168 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 163 25.19 T 13-10-2018 IPR022973 Ribosomal protein L10 CDG55_11640 c1b31e56ad1bed473827a0615daefc48 372 Pfam PF02515 CoA-transferase family III 5 358 2.4E-93 T 13-10-2018 IPR003673 CoA-transferase family III GO:0003824 CDG55_11640 c1b31e56ad1bed473827a0615daefc48 372 Gene3D G3DSA:3.40.50.10540 5 333 3.4E-107 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily CDG55_11640 c1b31e56ad1bed473827a0615daefc48 372 SUPERFAMILY SSF89796 3 369 2.09E-107 T 13-10-2018 IPR023606 CoA-transferase family III domain superfamily CDG55_11640 c1b31e56ad1bed473827a0615daefc48 372 Gene3D G3DSA:3.30.1540.10 226 314 3.4E-107 T 13-10-2018 CDG55_08865 b7c6c66ca2eab639fbf04bf309f480f2 431 Gene3D G3DSA:1.10.540.10 68 193 5.2E-20 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_08865 b7c6c66ca2eab639fbf04bf309f480f2 431 SUPERFAMILY SSF47203 301 425 4.99E-36 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_08865 b7c6c66ca2eab639fbf04bf309f480f2 431 SUPERFAMILY SSF56645 75 286 1.83E-31 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_08865 b7c6c66ca2eab639fbf04bf309f480f2 431 Gene3D G3DSA:2.40.110.10 197 290 1.9E-9 T 13-10-2018 CDG55_08865 b7c6c66ca2eab639fbf04bf309f480f2 431 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 80 190 1.9E-17 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_08865 b7c6c66ca2eab639fbf04bf309f480f2 431 Gene3D G3DSA:1.20.140.10 298 429 2.5E-35 T 13-10-2018 CDG55_08865 b7c6c66ca2eab639fbf04bf309f480f2 431 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 303 425 4.3E-29 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00943 Copper-transporting ATPase signature 296 314 8.7E-12 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00943 Copper-transporting ATPase signature 121 141 8.7E-12 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00943 Copper-transporting ATPase signature 429 443 8.7E-12 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00943 Copper-transporting ATPase signature 276 295 8.7E-12 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00943 Copper-transporting ATPase signature 781 795 8.7E-12 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00943 Copper-transporting ATPase signature 685 702 8.7E-12 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 239 817 3.1E-187 T 13-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 SUPERFAMILY SSF81653 310 406 5.89E-29 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 708 727 1.7E-29 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 655 665 1.7E-29 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 731 743 1.7E-29 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 356 370 1.7E-29 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 508 522 1.7E-29 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 633 644 1.7E-29 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 278 787 2.4E-91 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Gene3D G3DSA:3.40.50.1000 489 760 4.1E-91 T 13-10-2018 IPR023214 HAD superfamily CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 SUPERFAMILY SSF55008 80 145 6.28E-21 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Gene3D G3DSA:3.30.70.100 12 77 9.6E-22 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 SUPERFAMILY SSF81665 255 775 4.58E-13 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Pfam PF00702 haloacid dehalogenase-like hydrolase 505 722 3.5E-44 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Pfam PF00403 Heavy-metal-associated domain 83 140 4.0E-17 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Pfam PF00403 Heavy-metal-associated domain 15 75 4.1E-15 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 221 818 7.8E-177 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 SUPERFAMILY SSF56784 506 815 1.56E-61 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 SUPERFAMILY SSF55008 9 76 6.54E-21 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Pfam PF00122 E1-E2 ATPase 307 486 4.4E-56 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 81 141 1.1E-11 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 13 76 2.5E-13 T 13-10-2018 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 Reactome: R-HSA-936837 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Gene3D G3DSA:2.70.150.20 299 411 4.3E-41 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Gene3D G3DSA:3.30.70.100 81 144 4.4E-23 T 13-10-2018 CDG55_00950 d44b020430561d6c6d96b308f82454cf 828 Gene3D G3DSA:3.40.1110.10 519 640 4.1E-91 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CDG55_11585 5711426142085e1329b9fb20556a824f 338 Gene3D G3DSA:3.40.50.150 1 148 1.1E-39 T 13-10-2018 CDG55_11585 5711426142085e1329b9fb20556a824f 338 SUPERFAMILY SSF53335 150 315 1.24E-25 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_11585 5711426142085e1329b9fb20556a824f 338 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 1 337 38.658 T 13-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 CDG55_11585 5711426142085e1329b9fb20556a824f 338 Pfam PF05175 Methyltransferase small domain 165 333 2.0E-53 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CDG55_11585 5711426142085e1329b9fb20556a824f 338 Gene3D G3DSA:3.40.50.150 152 337 9.0E-41 T 13-10-2018 CDG55_11585 5711426142085e1329b9fb20556a824f 338 Pfam PF08468 Methyltransferase small domain N-terminal 5 156 1.0E-42 T 13-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 Pfam PF01817 Chorismate mutase type II 18 96 1.8E-22 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 Gene3D G3DSA:3.40.190.10 181 265 7.7E-61 T 13-10-2018 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 SUPERFAMILY SSF55021 271 365 2.33E-26 T 13-10-2018 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 SUPERFAMILY SSF53850 101 285 1.09E-61 T 13-10-2018 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 Pfam PF01842 ACT domain 287 351 2.0E-11 T 13-10-2018 IPR002912 ACT domain CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 Gene3D G3DSA:3.30.70.260 279 368 2.5E-28 T 13-10-2018 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 TIGRFAM TIGR01807 CM_P2: chorismate mutase 14 89 1.9E-27 T 13-10-2018 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 Pfam PF00800 Prephenate dehydratase 101 278 5.0E-64 T 13-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 PIRSF PIRSF001500 7 369 9.4E-138 T 13-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 Gene3D G3DSA:1.20.59.10 14 100 7.8E-31 T 13-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 Gene3D G3DSA:3.40.190.10 103 274 7.7E-61 T 13-10-2018 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 SMART SM00830 18 99 1.3E-29 T 13-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDG55_07880 59bc83df9e901c98fb1ee5a35064f5d2 369 SUPERFAMILY SSF48600 11 97 1.83E-20 T 13-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 CDG55_13500 8c127a0ba7048b0e6807794d74468556 311 Pfam PF12833 Helix-turn-helix domain 227 305 2.2E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_13500 8c127a0ba7048b0e6807794d74468556 311 SUPERFAMILY SSF46689 257 306 6.72E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_13500 8c127a0ba7048b0e6807794d74468556 311 SMART SM00342 221 304 3.1E-29 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_13500 8c127a0ba7048b0e6807794d74468556 311 Pfam PF12852 Cupin 2 189 2.9E-37 T 13-10-2018 IPR032783 AraC-type transcription regulator, ligand-binding domain CDG55_13500 8c127a0ba7048b0e6807794d74468556 311 SUPERFAMILY SSF46689 205 254 4.57E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_13500 8c127a0ba7048b0e6807794d74468556 311 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 273 288 1.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_13500 8c127a0ba7048b0e6807794d74468556 311 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 288 304 1.9E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_13500 8c127a0ba7048b0e6807794d74468556 311 Gene3D G3DSA:1.10.10.60 201 310 1.7E-29 T 13-10-2018 CDG55_02265 f653ac016b09dc21500badb9cb1b03bc 197 Gene3D G3DSA:3.30.230.40 92 197 3.5E-38 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 CDG55_02265 f653ac016b09dc21500badb9cb1b03bc 197 Gene3D G3DSA:3.30.230.40 1 91 7.0E-38 T 13-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 CDG55_02265 f653ac016b09dc21500badb9cb1b03bc 197 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 4 197 41.373 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CDG55_02265 f653ac016b09dc21500badb9cb1b03bc 197 SUPERFAMILY SSF54211 4 88 1.77E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_02265 f653ac016b09dc21500badb9cb1b03bc 197 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 33 176 3.1E-63 T 13-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 CDG55_02265 f653ac016b09dc21500badb9cb1b03bc 197 SUPERFAMILY SSF54211 89 181 4.05E-35 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 388 483 3.2E-11 T 13-10-2018 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 Gene3D G3DSA:3.50.50.60 13 373 2.8E-134 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 SUPERFAMILY SSF51905 10 299 3.24E-32 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 41 53 7.0E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 354 366 7.0E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 12 24 7.0E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 86 98 7.0E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 319 325 7.0E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 25 35 7.0E-29 T 13-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 Gene3D G3DSA:3.30.9.10 90 326 2.8E-134 T 13-10-2018 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 Gene3D G3DSA:1.10.8.870 399 468 1.8E-19 T 13-10-2018 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 CDG55_05395 438245b91190af9e189ff7c6ac275d4e 506 Pfam PF01266 FAD dependent oxidoreductase 13 333 1.2E-46 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDG55_10290 cd04d21c4555542201fc1e00374cc669 258 Gene3D G3DSA:3.40.1280.10 112 258 6.2E-44 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDG55_10290 cd04d21c4555542201fc1e00374cc669 258 SUPERFAMILY SSF75217 111 258 2.09E-35 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CDG55_10290 cd04d21c4555542201fc1e00374cc669 258 SUPERFAMILY SSF55315 5 105 1.65E-14 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CDG55_10290 cd04d21c4555542201fc1e00374cc669 258 Gene3D G3DSA:3.30.1330.30 5 105 1.3E-8 T 13-10-2018 IPR029064 50S ribosomal protein L30e-like CDG55_10290 cd04d21c4555542201fc1e00374cc669 258 Pfam PF00588 SpoU rRNA Methylase family 117 250 1.3E-29 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDG55_07950 7e5b32676693c07df42daaa43b491633 310 SUPERFAMILY SSF46785 5 116 3.33E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_07950 7e5b32676693c07df42daaa43b491633 310 Gene3D G3DSA:3.40.190.10 167 275 2.5E-69 T 13-10-2018 CDG55_07950 7e5b32676693c07df42daaa43b491633 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 8.5E-13 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_07950 7e5b32676693c07df42daaa43b491633 310 Pfam PF03466 LysR substrate binding domain 94 297 1.2E-34 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_07950 7e5b32676693c07df42daaa43b491633 310 SUPERFAMILY SSF53850 93 300 9.53E-36 T 13-10-2018 CDG55_07950 7e5b32676693c07df42daaa43b491633 310 Gene3D G3DSA:1.10.10.10 5 93 6.3E-20 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07950 7e5b32676693c07df42daaa43b491633 310 Gene3D G3DSA:3.40.190.10 94 296 2.5E-69 T 13-10-2018 CDG55_00915 a9ace4254e3bab24d719bef3ce2341a9 188 Pfam PF00239 Resolvase, N terminal domain 6 139 1.6E-38 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDG55_00915 a9ace4254e3bab24d719bef3ce2341a9 188 SMART SM00857 5 139 3.5E-49 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDG55_00915 a9ace4254e3bab24d719bef3ce2341a9 188 Gene3D G3DSA:3.40.50.1390 5 128 2.0E-41 T 13-10-2018 CDG55_00915 a9ace4254e3bab24d719bef3ce2341a9 188 SUPERFAMILY SSF53041 5 139 1.83E-41 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 CDG55_10435 40085eeef6fe3f66ea1f25ee2a5a6652 310 Pfam PF01012 Electron transfer flavoprotein domain 4 170 5.1E-39 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDG55_10435 40085eeef6fe3f66ea1f25ee2a5a6652 310 SMART SM00893 3 182 2.0E-53 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDG55_10435 40085eeef6fe3f66ea1f25ee2a5a6652 310 Gene3D G3DSA:3.40.50.620 2 183 8.1E-55 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10435 40085eeef6fe3f66ea1f25ee2a5a6652 310 Gene3D G3DSA:3.40.50.1220 184 310 1.5E-53 T 13-10-2018 CDG55_10435 40085eeef6fe3f66ea1f25ee2a5a6652 310 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 273 1.1E-33 T 13-10-2018 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Reactome: R-HSA-611105 CDG55_10435 40085eeef6fe3f66ea1f25ee2a5a6652 310 SUPERFAMILY SSF52402 2 185 1.33E-57 T 13-10-2018 CDG55_10435 40085eeef6fe3f66ea1f25ee2a5a6652 310 PIRSF PIRSF000089 1 310 7.3E-102 T 13-10-2018 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 Reactome: R-HSA-611105 CDG55_10435 40085eeef6fe3f66ea1f25ee2a5a6652 310 SUPERFAMILY SSF52467 189 309 1.85E-44 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CDG55_05455 2f8513ddd2de6e46e021a2f711354c99 375 Pfam PF00196 Bacterial regulatory proteins, luxR family 317 370 3.6E-8 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_05455 2f8513ddd2de6e46e021a2f711354c99 375 SUPERFAMILY SSF46894 308 373 9.18E-13 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_05455 2f8513ddd2de6e46e021a2f711354c99 375 SMART SM00421 314 371 3.0E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_05455 2f8513ddd2de6e46e021a2f711354c99 375 Gene3D G3DSA:1.10.10.10 317 374 4.2E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SUPERFAMILY SSF50891 633 759 3.64E-31 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 473 752 4.7E-85 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Gene3D G3DSA:2.40.100.10 889 1111 6.6E-93 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.4E-40 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Gene3D G3DSA:2.40.50.100 1125 1201 8.9E-23 T 13-10-2018 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SUPERFAMILY SSF50891 922 1054 1.4E-23 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Gene3D G3DSA:2.40.100.10 632 788 3.4E-59 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Gene3D G3DSA:3.30.470.130 1 446 3.1E-177 T 13-10-2018 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 808 1027 8.9E-45 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Pfam PF00364 Biotin-requiring enzyme 1138 1199 2.4E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SMART SM00797 472 770 3.1E-159 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 322 4.1E-63 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SUPERFAMILY SSF51230 1126 1201 2.62E-20 T 13-10-2018 IPR011053 Single hybrid motif CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SMART SM00796 806 1038 1.8E-96 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SUPERFAMILY SSF160467 808 900 2.09E-19 T 13-10-2018 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SUPERFAMILY SSF52440 1 111 3.38E-42 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 450 774 1.5E-95 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Gene3D G3DSA:3.30.1360.40 791 885 8.8E-30 T 13-10-2018 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SMART SM00878 337 441 6.7E-49 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SUPERFAMILY SSF51246 331 443 2.3E-35 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 Pfam PF02785 Biotin carboxylase C-terminal domain 337 441 6.8E-36 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 TIGRFAM TIGR02712 urea_carbox: urea carboxylase 2 1200 0.0 T 13-10-2018 IPR014084 Urea carboxylase KEGG: 00220+3.5.1.54+6.3.4.6|KEGG: 00791+3.5.1.54+6.3.4.6|MetaCyc: PWY-5169|MetaCyc: PWY-5703 CDG55_08550 ad08c6f4ff93ace50a8273f59e58cf29 1201 SUPERFAMILY SSF56059 83 353 3.89E-66 T 13-10-2018 CDG55_08765 0c44c48db11a5861bc310ac3aa5678b8 703 Gene3D G3DSA:2.170.130.10 27 169 1.9E-27 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_08765 0c44c48db11a5861bc310ac3aa5678b8 703 Gene3D G3DSA:2.40.170.20 176 701 7.4E-79 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_08765 0c44c48db11a5861bc310ac3aa5678b8 703 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 157 4.7E-16 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_08765 0c44c48db11a5861bc310ac3aa5678b8 703 SUPERFAMILY SSF56935 27 701 9.16E-112 T 13-10-2018 CDG55_08765 0c44c48db11a5861bc310ac3aa5678b8 703 Pfam PF00593 TonB dependent receptor 234 699 6.8E-48 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_12525 9d6590839cccaa57905cdb647a2b0dd0 58 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 6 57 1.5E-14 T 13-10-2018 IPR010260 DNA-binding transcriptional activator AlpA CDG55_14675 f9c9374f19c0a5d7412b3849bb86ca85 447 Gene3D G3DSA:3.40.50.300 1 375 3.0E-21 T 13-10-2018 CDG55_14675 f9c9374f19c0a5d7412b3849bb86ca85 447 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 24 366 4.9E-28 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_14675 f9c9374f19c0a5d7412b3849bb86ca85 447 SUPERFAMILY SSF52540 1 371 6.71E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14675 f9c9374f19c0a5d7412b3849bb86ca85 447 PIRSF PIRSF029347 1 403 8.3E-20 T 13-10-2018 IPR014555 RecF-like CDG55_12730 094a6df20b45a89c62818b68e6280925 663 SMART SM00382 41 235 3.1E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_12730 094a6df20b45a89c62818b68e6280925 663 Gene3D G3DSA:3.40.50.300 10 274 1.1E-67 T 13-10-2018 CDG55_12730 094a6df20b45a89c62818b68e6280925 663 SUPERFAMILY SSF52540 12 232 2.13E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12730 094a6df20b45a89c62818b68e6280925 663 Pfam PF12704 MacB-like periplasmic core domain 285 503 3.6E-38 T 13-10-2018 IPR025857 MacB-like periplasmic core domain CDG55_12730 094a6df20b45a89c62818b68e6280925 663 Pfam PF02687 FtsX-like permease family 567 656 8.5E-11 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CDG55_12730 094a6df20b45a89c62818b68e6280925 663 Pfam PF00005 ABC transporter 32 180 3.1E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_14630 48e8c17b849b5f7a9e6fc44d981cd63f 418 Gene3D G3DSA:3.50.50.60 1 77 4.7E-12 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_14630 48e8c17b849b5f7a9e6fc44d981cd63f 418 Gene3D G3DSA:3.50.50.60 105 402 1.3E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_14630 48e8c17b849b5f7a9e6fc44d981cd63f 418 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 409 47.617 T 13-10-2018 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 CDG55_14630 48e8c17b849b5f7a9e6fc44d981cd63f 418 SUPERFAMILY SSF54373 269 358 5.1E-17 T 13-10-2018 CDG55_14630 48e8c17b849b5f7a9e6fc44d981cd63f 418 SUPERFAMILY SSF51905 1 414 1.42E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_14630 48e8c17b849b5f7a9e6fc44d981cd63f 418 Gene3D G3DSA:3.30.9.10 134 360 1.3E-53 T 13-10-2018 CDG55_14630 48e8c17b849b5f7a9e6fc44d981cd63f 418 Pfam PF01266 FAD dependent oxidoreductase 2 396 1.1E-73 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDG55_10055 77b356b7d0cf7109f7ebfac053cfe11a 218 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 62 210 4.2E-48 T 13-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 CDG55_10055 77b356b7d0cf7109f7ebfac053cfe11a 218 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 9 59 1.2E-16 T 13-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 CDG55_10055 77b356b7d0cf7109f7ebfac053cfe11a 218 SUPERFAMILY SSF47240 10 213 1.02E-71 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_10055 77b356b7d0cf7109f7ebfac053cfe11a 218 PIRSF PIRSF020736 1 215 6.3E-88 T 13-10-2018 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 CDG55_10055 77b356b7d0cf7109f7ebfac053cfe11a 218 Gene3D G3DSA:1.20.1260.10 6 218 7.9E-73 T 13-10-2018 IPR012347 Ferritin-like CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Pfam PF00476 DNA polymerase family A 548 918 1.2E-147 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 SUPERFAMILY SSF53098 330 514 2.04E-54 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Gene3D G3DSA:3.30.420.10 324 538 1.1E-69 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Pfam PF01612 3'-5' exonuclease 327 514 2.9E-37 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Gene3D G3DSA:1.10.150.20 169 241 1.2E-93 T 13-10-2018 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Gene3D G3DSA:1.20.1060.10 540 653 2.0E-37 T 13-10-2018 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 166 259 3.0E-29 T 13-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 SUPERFAMILY SSF47807 166 280 1.79E-33 T 13-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 SMART SM00474 327 514 9.5E-39 T 13-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 165 1.0E-50 T 13-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 TIGRFAM TIGR00593 pola: DNA polymerase I 5 921 3.3E-291 T 13-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 SMART SM00279 168 203 3.7E-13 T 13-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Gene3D G3DSA:1.10.150.20 704 847 5.2E-107 T 13-10-2018 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 SMART SM00475 1 256 6.8E-118 T 13-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 673 688 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 725 738 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 749 774 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 695 718 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 650 672 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 786 797 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 808 819 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 840 856 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 PRINTS PR00868 DNA-polymerase family A (pol I) signature 868 881 4.4E-77 T 13-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 SMART SM00482 681 887 4.2E-100 T 13-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 SUPERFAMILY SSF88723 1 165 5.33E-53 T 13-10-2018 IPR029060 PIN-like domain superfamily CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 SUPERFAMILY SSF56672 517 921 2.56E-146 T 13-10-2018 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Gene3D G3DSA:3.30.70.370 659 917 5.2E-107 T 13-10-2018 CDG55_03970 5d51a71fd78d4a9070bb3d63c9244b1f 921 Gene3D G3DSA:3.40.50.1010 5 272 1.2E-93 T 13-10-2018 CDG55_03980 2dde0461728a37d3c6346ab1b2202b22 305 SUPERFAMILY SSF82689 183 277 8.76E-20 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDG55_03980 2dde0461728a37d3c6346ab1b2202b22 305 Gene3D G3DSA:2.30.30.60 127 180 7.1E-9 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CDG55_03980 2dde0461728a37d3c6346ab1b2202b22 305 SUPERFAMILY SSF82861 27 109 1.44E-8 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CDG55_03980 2dde0461728a37d3c6346ab1b2202b22 305 Pfam PF00924 Mechanosensitive ion channel 70 270 2.5E-41 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDG55_03980 2dde0461728a37d3c6346ab1b2202b22 305 SUPERFAMILY SSF50182 112 181 6.54E-12 T 13-10-2018 IPR010920 LSM domain superfamily CDG55_03980 2dde0461728a37d3c6346ab1b2202b22 305 Gene3D G3DSA:3.30.70.100 182 275 6.4E-19 T 13-10-2018 CDG55_11760 d23845e6f7087c45461217524fc1593e 340 Gene3D G3DSA:1.10.10.60 233 340 7.6E-26 T 13-10-2018 CDG55_11760 d23845e6f7087c45461217524fc1593e 340 SUPERFAMILY SSF46689 291 339 2.02E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_11760 d23845e6f7087c45461217524fc1593e 340 SMART SM00342 256 337 1.3E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_11760 d23845e6f7087c45461217524fc1593e 340 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 321 337 6.7E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_11760 d23845e6f7087c45461217524fc1593e 340 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 306 321 6.7E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_11760 d23845e6f7087c45461217524fc1593e 340 Pfam PF12833 Helix-turn-helix domain 262 338 2.8E-20 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_11760 d23845e6f7087c45461217524fc1593e 340 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 47 205 3.9E-18 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 SUPERFAMILY SSF55021 805 857 4.12E-9 T 13-10-2018 CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 PIRSF PIRSF006288 10 883 1.4E-302 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 SUPERFAMILY SSF81301 39 167 3.63E-14 T 13-10-2018 CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 SUPERFAMILY SSF109604 425 547 3.35E-12 T 13-10-2018 CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 30 876 2.3E-262 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 Pfam PF01966 HD domain 492 585 6.7E-8 T 13-10-2018 IPR006674 HD domain CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 SUPERFAMILY SSF81593 193 312 8.63E-7 T 13-10-2018 CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 Pfam PF08335 GlnD PII-uridylyltransferase 175 317 6.6E-35 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 SMART SM00471 452 599 2.0E-5 T 13-10-2018 IPR003607 HD/PDEase domain CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 Gene3D G3DSA:1.10.3210.10 443 579 1.5E-8 T 13-10-2018 CDG55_09435 87bf39ba03523aced08c8442d19b1f9b 887 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 887 280.909 T 13-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 CDG55_08665 e793e60739ca7071b8e68ca793b01a24 198 TIGRFAM TIGR00615 recR: recombination protein RecR 2 194 5.0E-73 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CDG55_08665 e793e60739ca7071b8e68ca793b01a24 198 SMART SM00493 79 164 4.3E-17 T 13-10-2018 IPR006171 TOPRIM domain CDG55_08665 e793e60739ca7071b8e68ca793b01a24 198 Pfam PF13662 Toprim domain 81 170 4.9E-24 T 13-10-2018 IPR006171 TOPRIM domain CDG55_08665 e793e60739ca7071b8e68ca793b01a24 198 Gene3D G3DSA:3.40.1360.10 76 197 1.2E-44 T 13-10-2018 CDG55_08665 e793e60739ca7071b8e68ca793b01a24 198 SUPERFAMILY SSF111304 3 197 1.09E-74 T 13-10-2018 IPR023627 Recombination protein RecR CDG55_08665 e793e60739ca7071b8e68ca793b01a24 198 Hamap MF_00017 Recombination protein RecR [recR]. 1 197 95.711 T 13-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 CDG55_08665 e793e60739ca7071b8e68ca793b01a24 198 Pfam PF02132 RecR protein 41 77 1.4E-12 T 13-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger CDG55_08665 e793e60739ca7071b8e68ca793b01a24 198 Gene3D G3DSA:1.10.8.420 2 51 4.8E-14 T 13-10-2018 CDG55_03835 c03c82b705cfbcd526e66e8f36db121a 269 SUPERFAMILY SSF51621 2 265 2.09E-94 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CDG55_03835 c03c82b705cfbcd526e66e8f36db121a 269 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 260 5.9E-99 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDG55_03835 c03c82b705cfbcd526e66e8f36db121a 269 PIRSF PIRSF000388 1 268 3.5E-92 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDG55_03835 c03c82b705cfbcd526e66e8f36db121a 269 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 7 266 9.5E-95 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDG55_03835 c03c82b705cfbcd526e66e8f36db121a 269 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 2 265 39.475 T 13-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 CDG55_03835 c03c82b705cfbcd526e66e8f36db121a 269 Gene3D G3DSA:3.20.20.60 1 269 1.6E-98 T 13-10-2018 CDG55_10740 583fd1eb4409fe336f290b3fc56dcd68 301 Pfam PF01435 Peptidase family M48 81 298 2.7E-40 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CDG55_10740 583fd1eb4409fe336f290b3fc56dcd68 301 Gene3D G3DSA:3.30.2010.10 74 165 2.0E-32 T 13-10-2018 CDG55_10740 583fd1eb4409fe336f290b3fc56dcd68 301 Hamap MF_00188 Protease HtpX [htpX]. 1 298 25.257 T 13-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 CDG55_02685 b1d6ab4944ae1d7be8cd62516829db38 316 Pfam PF02401 LytB protein 3 283 1.1E-96 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CDG55_02685 b1d6ab4944ae1d7be8cd62516829db38 316 Gene3D G3DSA:3.40.50.11270 12 96 1.0E-114 T 13-10-2018 CDG55_02685 b1d6ab4944ae1d7be8cd62516829db38 316 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 9.6E-104 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CDG55_02685 b1d6ab4944ae1d7be8cd62516829db38 316 Gene3D G3DSA:3.40.1010.20 6 283 1.0E-114 T 13-10-2018 CDG55_02685 b1d6ab4944ae1d7be8cd62516829db38 316 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 38.963 T 13-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 CDG55_02685 b1d6ab4944ae1d7be8cd62516829db38 316 Gene3D G3DSA:3.40.1010.20 97 197 1.0E-114 T 13-10-2018 CDG55_05715 de2d35c10949c8a945352e22734aeaa3 320 Gene3D G3DSA:3.90.226.10 85 258 3.8E-39 T 13-10-2018 CDG55_05715 de2d35c10949c8a945352e22734aeaa3 320 Pfam PF01343 Peptidase family S49 118 260 3.8E-41 T 13-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 CDG55_05715 de2d35c10949c8a945352e22734aeaa3 320 Gene3D G3DSA:3.40.1750.20 159 223 3.8E-39 T 13-10-2018 CDG55_05715 de2d35c10949c8a945352e22734aeaa3 320 SUPERFAMILY SSF52096 54 256 2.08E-25 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_05715 de2d35c10949c8a945352e22734aeaa3 320 Pfam PF08496 Peptidase family S49 N-terminal 11 115 1.6E-30 T 13-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 CDG55_09330 1d978c812ba702e90a5e2f9b361cb1ce 331 SMART SM00829 14 328 1.3E-29 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDG55_09330 1d978c812ba702e90a5e2f9b361cb1ce 331 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 90 1.8E-10 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDG55_09330 1d978c812ba702e90a5e2f9b361cb1ce 331 Gene3D G3DSA:3.90.180.10 22 316 1.9E-100 T 13-10-2018 CDG55_09330 1d978c812ba702e90a5e2f9b361cb1ce 331 Pfam PF13602 Zinc-binding dehydrogenase 196 328 3.8E-16 T 13-10-2018 CDG55_09330 1d978c812ba702e90a5e2f9b361cb1ce 331 Gene3D G3DSA:3.40.50.720 129 297 1.9E-100 T 13-10-2018 CDG55_09330 1d978c812ba702e90a5e2f9b361cb1ce 331 SUPERFAMILY SSF51735 121 295 1.36E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09330 1d978c812ba702e90a5e2f9b361cb1ce 331 SUPERFAMILY SSF50129 4 153 1.83E-42 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_04745 dcde24dbda0a6ece81bef9d2323b5064 80 Gene3D G3DSA:1.10.1200.10 1 74 1.9E-24 T 13-10-2018 IPR036736 ACP-like superfamily CDG55_04745 dcde24dbda0a6ece81bef9d2323b5064 80 SUPERFAMILY SSF47336 3 78 7.98E-20 T 13-10-2018 IPR036736 ACP-like superfamily CDG55_04745 dcde24dbda0a6ece81bef9d2323b5064 80 Hamap MF_01217 Acyl carrier protein [acpP]. 2 76 19.144 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CDG55_04745 dcde24dbda0a6ece81bef9d2323b5064 80 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 74 4.9E-28 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CDG55_04745 dcde24dbda0a6ece81bef9d2323b5064 80 Pfam PF00550 Phosphopantetheine attachment site 6 71 2.0E-13 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CDG55_04745 dcde24dbda0a6ece81bef9d2323b5064 80 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 40 74 1.0E-7 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CDG55_03675 01c7ea4eeb13e87c3462e6f5793bb273 86 Gene3D G3DSA:3.40.30.10 1 86 1.5E-29 T 13-10-2018 CDG55_03675 01c7ea4eeb13e87c3462e6f5793bb273 86 Pfam PF00462 Glutaredoxin 6 66 1.6E-21 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CDG55_03675 01c7ea4eeb13e87c3462e6f5793bb273 86 SUPERFAMILY SSF52833 3 85 8.09E-28 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_03675 01c7ea4eeb13e87c3462e6f5793bb273 86 PRINTS PR00160 Glutaredoxin signature 6 24 3.1E-13 T 13-10-2018 IPR014025 Glutaredoxin subgroup CDG55_03675 01c7ea4eeb13e87c3462e6f5793bb273 86 PRINTS PR00160 Glutaredoxin signature 49 62 3.1E-13 T 13-10-2018 IPR014025 Glutaredoxin subgroup CDG55_03675 01c7ea4eeb13e87c3462e6f5793bb273 86 PRINTS PR00160 Glutaredoxin signature 63 76 3.1E-13 T 13-10-2018 IPR014025 Glutaredoxin subgroup CDG55_03675 01c7ea4eeb13e87c3462e6f5793bb273 86 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 6 85 7.5E-32 T 13-10-2018 IPR011900 Glutaredoxin, GrxC GO:0045454 CDG55_10230 fe1d93e4c3fc2c36c56f6642ba282b99 446 SUPERFAMILY SSF109604 25 385 3.43E-62 T 13-10-2018 CDG55_10230 fe1d93e4c3fc2c36c56f6642ba282b99 446 SMART SM00471 59 261 1.7E-7 T 13-10-2018 IPR003607 HD/PDEase domain CDG55_10230 fe1d93e4c3fc2c36c56f6642ba282b99 446 Gene3D G3DSA:1.10.3210.10 28 244 3.1E-139 T 13-10-2018 CDG55_10230 fe1d93e4c3fc2c36c56f6642ba282b99 446 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 26 438 7.6E-96 T 13-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 CDG55_10230 fe1d93e4c3fc2c36c56f6642ba282b99 446 Gene3D G3DSA:1.10.3550.10 114 429 3.1E-139 T 13-10-2018 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal CDG55_10230 fe1d93e4c3fc2c36c56f6642ba282b99 446 Gene3D G3DSA:1.10.3410.10 245 356 3.1E-139 T 13-10-2018 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily KEGG: 00230+3.1.5.1 CDG55_10230 fe1d93e4c3fc2c36c56f6642ba282b99 446 Pfam PF01966 HD domain 63 138 2.8E-8 T 13-10-2018 IPR006674 HD domain CDG55_14360 d1d583693adb10f3af53b1c9218383cf 175 Pfam PF03551 Transcriptional regulator PadR-like family 38 105 5.2E-16 T 13-10-2018 IPR005149 Transcription regulator PadR, N-terminal CDG55_14360 d1d583693adb10f3af53b1c9218383cf 175 SUPERFAMILY SSF46785 20 121 1.59E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_14360 d1d583693adb10f3af53b1c9218383cf 175 Gene3D G3DSA:1.10.10.10 20 129 2.7E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 SUPERFAMILY SSF51984 10 94 2.35E-17 T 13-10-2018 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 Gene3D G3DSA:3.90.190.20 303 443 3.1E-44 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 Gene3D G3DSA:3.40.1190.10 94 302 1.4E-62 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 7 447 33.754 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 Pfam PF08245 Mur ligase middle domain 110 282 2.4E-27 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 SUPERFAMILY SSF53244 302 447 3.97E-43 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 Gene3D G3DSA:3.40.50.720 8 93 3.9E-22 T 13-10-2018 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 SUPERFAMILY SSF53623 97 300 2.09E-52 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 10 445 5.0E-123 T 13-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDG55_13840 19a20e6b49d2c84238d9fee9c6a7a97b 452 Pfam PF02875 Mur ligase family, glutamate ligase domain 304 382 8.4E-8 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CDG55_02175 b9c0266463dcf30f3b0cf9ee27aec4c1 676 Pfam PF13676 TIR domain 171 257 7.0E-7 T 13-10-2018 IPR000157 Toll/interleukin-1 receptor homology (TIR) domain GO:0005515|GO:0007165 CDG55_02175 b9c0266463dcf30f3b0cf9ee27aec4c1 676 Gene3D G3DSA:3.40.50.10140 167 268 9.6E-10 T 13-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily CDG55_02175 b9c0266463dcf30f3b0cf9ee27aec4c1 676 SUPERFAMILY SSF52200 167 256 3.79E-7 T 13-10-2018 IPR035897 Toll/interleukin-1 receptor homology (TIR) domain superfamily CDG55_08850 6e41c54859dd98020b38125cdf459b39 155 SUPERFAMILY SSF55826 2 152 2.35E-45 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CDG55_08850 6e41c54859dd98020b38125cdf459b39 155 Gene3D G3DSA:3.90.960.10 1 154 5.8E-59 T 13-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 CDG55_08850 6e41c54859dd98020b38125cdf459b39 155 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 152 2.9E-58 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CDG55_08850 6e41c54859dd98020b38125cdf459b39 155 PIRSF PIRSF006181 1 155 2.5E-58 T 13-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CDG55_08850 6e41c54859dd98020b38125cdf459b39 155 Pfam PF04073 Aminoacyl-tRNA editing domain 32 144 1.0E-27 T 13-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 CDG55_01370 de95c77ec5538124e0a836e5e79b49f2 215 PIRSF PIRSF039033 2 213 1.1E-41 T 13-10-2018 IPR028347 START domain-containing protein CDG55_01370 de95c77ec5538124e0a836e5e79b49f2 215 SUPERFAMILY SSF55961 27 199 1.4E-32 T 13-10-2018 CDG55_01370 de95c77ec5538124e0a836e5e79b49f2 215 Pfam PF01852 START domain 36 194 3.3E-9 T 13-10-2018 IPR002913 START domain GO:0008289 CDG55_01370 de95c77ec5538124e0a836e5e79b49f2 215 Gene3D G3DSA:3.30.530.20 26 209 1.1E-48 T 13-10-2018 IPR023393 START-like domain superfamily CDG55_01940 d1fd4e64fe82563032b1dcab2f6609c5 368 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 8 356 1.8E-182 T 13-10-2018 IPR024014 FMNH(2)-dependent dimethylsulfone monooxygenase SfnG KEGG: 00920+1.14.14.35|MetaCyc: PWY-6059 CDG55_01940 d1fd4e64fe82563032b1dcab2f6609c5 368 Gene3D G3DSA:3.20.20.30 5 360 2.4E-103 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 CDG55_01940 d1fd4e64fe82563032b1dcab2f6609c5 368 Pfam PF00296 Luciferase-like monooxygenase 9 328 1.1E-68 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDG55_01940 d1fd4e64fe82563032b1dcab2f6609c5 368 SUPERFAMILY SSF51679 8 355 5.23E-85 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 30 509 3.2E-152 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 825 870 1.9E-11 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 543 587 1.6E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 593 640 8.5E-8 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 696 729 4.7E-10 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 648 691 8.0E-9 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 775 820 1.3E-13 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 6 870 0.0 T 13-10-2018 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Gene3D G3DSA:3.90.199.10 31 524 2.4E-218 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 SUPERFAMILY SSF56719 28 525 3.14E-173 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Gene3D G3DSA:1.10.268.10 368 496 2.4E-218 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 872 23.535 T 13-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Gene3D G3DSA:2.120.10.90 533 872 5.6E-115 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 Gene3D G3DSA:3.30.1360.40 234 331 2.4E-218 T 13-10-2018 CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 SUPERFAMILY SSF101904 536 881 3.79E-99 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CDG55_10425 6ef24bfcf25ef035d6a38d560e4b67da 914 SMART SM00434 9 502 2.0E-266 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_11140 eb899c1653a77489a87002d4ca515aad 238 Pfam PF01569 PAP2 superfamily 112 219 6.2E-7 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDG55_11140 eb899c1653a77489a87002d4ca515aad 238 SUPERFAMILY SSF48317 25 224 3.11E-12 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CDG55_11140 eb899c1653a77489a87002d4ca515aad 238 Gene3D G3DSA:1.20.144.10 125 235 4.3E-7 T 13-10-2018 CDG55_01500 e5c3cebfdad111e4fd6168c2ae2f8958 149 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 12 139 1.7E-38 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 CDG55_01500 e5c3cebfdad111e4fd6168c2ae2f8958 149 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 10 141 21.021 T 13-10-2018 IPR011605 NusB antitermination factor GO:0006353 CDG55_01500 e5c3cebfdad111e4fd6168c2ae2f8958 149 Gene3D G3DSA:1.10.940.10 6 145 9.8E-44 T 13-10-2018 IPR035926 NusB-like superfamily CDG55_01500 e5c3cebfdad111e4fd6168c2ae2f8958 149 SUPERFAMILY SSF48013 10 142 5.63E-37 T 13-10-2018 IPR035926 NusB-like superfamily CDG55_01500 e5c3cebfdad111e4fd6168c2ae2f8958 149 Pfam PF01029 NusB family 13 136 3.0E-28 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CDG55_12935 7f9162a400c5d1067a35c89d4c56a1af 156 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 36.293 T 13-10-2018 IPR022927 RNA pyrophosphohydrolase RppH CDG55_12935 7f9162a400c5d1067a35c89d4c56a1af 156 SUPERFAMILY SSF55811 7 154 1.25E-32 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_12935 7f9162a400c5d1067a35c89d4c56a1af 156 Pfam PF00293 NUDIX domain 7 145 3.3E-26 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_12935 7f9162a400c5d1067a35c89d4c56a1af 156 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.0E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDG55_12935 7f9162a400c5d1067a35c89d4c56a1af 156 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.0E-7 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDG55_12935 7f9162a400c5d1067a35c89d4c56a1af 156 Gene3D G3DSA:3.90.79.10 1 154 1.3E-46 T 13-10-2018 CDG55_09335 318d258c469ed938de6b564f10db1d10 338 SUPERFAMILY SSF50129 8 157 1.18E-34 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_09335 318d258c469ed938de6b564f10db1d10 338 Gene3D G3DSA:3.90.180.10 20 334 6.8E-85 T 13-10-2018 CDG55_09335 318d258c469ed938de6b564f10db1d10 338 Pfam PF00107 Zinc-binding dehydrogenase 164 279 9.2E-21 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDG55_09335 318d258c469ed938de6b564f10db1d10 338 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 96 5.3E-9 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDG55_09335 318d258c469ed938de6b564f10db1d10 338 Gene3D G3DSA:3.40.50.720 132 274 6.8E-85 T 13-10-2018 CDG55_09335 318d258c469ed938de6b564f10db1d10 338 SMART SM00829 17 334 1.0E-35 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDG55_09335 318d258c469ed938de6b564f10db1d10 338 SUPERFAMILY SSF51735 124 280 5.71E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_11855 14020e0ddd32d42253a28719ee6ed245 162 Pfam PF11776 Nickel/cobalt transporter regulator 110 158 4.5E-18 T 13-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB CDG55_11855 14020e0ddd32d42253a28719ee6ed245 162 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 110 151 6.0E-8 T 13-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB CDG55_11855 14020e0ddd32d42253a28719ee6ed245 162 Gene3D G3DSA:3.10.450.160 88 162 3.1E-16 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 53 67 5.2E-5 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 83 99 5.2E-5 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 12 26 5.2E-5 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00097 Anthranilate synthase component II signature 56 65 4.9E-6 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00097 Anthranilate synthase component II signature 174 187 4.9E-6 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00097 Anthranilate synthase component II signature 83 94 4.9E-6 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 9 522 55.414 T 13-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 Pfam PF00117 Glutamine amidotransferase class-I 14 195 5.5E-39 T 13-10-2018 IPR017926 Glutamine amidotransferase CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 SUPERFAMILY SSF52317 8 234 1.72E-57 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 SUPERFAMILY SSF54810 402 522 6.8E-48 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 209 522 5.0E-146 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 56 65 2.8E-7 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 174 187 2.8E-7 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 PRINTS PR00096 Glutamine amidotransferase superfamily signature 83 94 2.8E-7 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 Pfam PF02540 NAD synthase 217 291 3.1E-8 T 13-10-2018 IPR022310 NAD/GMP synthase CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 Gene3D G3DSA:3.30.300.10 403 522 4.6E-49 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 Pfam PF00958 GMP synthase C terminal domain 430 521 2.2E-40 T 13-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 SUPERFAMILY SSF52402 194 417 1.7E-59 T 13-10-2018 CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 Gene3D G3DSA:3.40.50.880 11 203 2.5E-52 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 Gene3D G3DSA:3.40.50.620 205 402 5.2E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_14370 bddcb29b21d90528b95b1b014d6eac6d 522 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 12 201 1.0E-77 T 13-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 323 44.238 T 13-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 PIRSF PIRSF500210 1 323 2.2E-120 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 171 194 2.0E-63 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 26 53 2.0E-63 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 299 323 2.0E-63 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 140 163 2.0E-63 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 197 224 2.0E-63 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 63 89 2.0E-63 T 13-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 SUPERFAMILY SSF56655 4 323 8.74E-107 T 13-10-2018 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 Gene3D G3DSA:3.30.540.10 2 186 2.4E-65 T 13-10-2018 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 12 185 2.9E-59 T 13-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 PIRSF PIRSF000904 1 323 3.4E-118 T 13-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 CDG55_10285 757e76d4c8b72217aa36a33495579dbf 323 Gene3D G3DSA:3.40.190.80 188 323 1.1E-50 T 13-10-2018 CDG55_05555 2526dbbd6bf28af1f3493a8f64c4cf36 439 SUPERFAMILY SSF56601 3 278 2.23E-67 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_05555 2526dbbd6bf28af1f3493a8f64c4cf36 439 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 28 260 1.8E-62 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CDG55_05555 2526dbbd6bf28af1f3493a8f64c4cf36 439 Gene3D G3DSA:3.40.710.10 17 279 2.7E-79 T 13-10-2018 CDG55_05555 2526dbbd6bf28af1f3493a8f64c4cf36 439 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 114 131 9.2E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_05555 2526dbbd6bf28af1f3493a8f64c4cf36 439 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 141 154 9.2E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_05555 2526dbbd6bf28af1f3493a8f64c4cf36 439 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 59 70 9.2E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_11790 000fedb1db271cc6d7eef71a1a2aa1eb 635 SUPERFAMILY SSF56935 38 634 4.68E-104 T 13-10-2018 CDG55_11790 000fedb1db271cc6d7eef71a1a2aa1eb 635 Pfam PF00593 TonB dependent receptor 219 634 7.4E-42 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_11790 000fedb1db271cc6d7eef71a1a2aa1eb 635 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 158 1.0E-24 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_11790 000fedb1db271cc6d7eef71a1a2aa1eb 635 Gene3D G3DSA:2.40.170.20 167 635 4.7E-68 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_11790 000fedb1db271cc6d7eef71a1a2aa1eb 635 Gene3D G3DSA:2.170.130.10 33 163 1.1E-34 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 Gene3D G3DSA:3.30.390.30 352 477 8.1E-43 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 SUPERFAMILY SSF55424 348 471 1.29E-38 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 Gene3D G3DSA:3.50.50.60 162 283 3.8E-116 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 Gene3D G3DSA:3.50.50.60 5 340 3.8E-116 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 333 3.7E-70 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 285 1.2E-35 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.2E-35 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.2E-35 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 1.2E-35 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 298 320 1.2E-35 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 SUPERFAMILY SSF51905 1 343 1.21E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PIRSF PIRSF000350 1 469 4.2E-86 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 470 7.7E-158 T 13-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 413 428 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 207 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 44 59 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 155 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 435 455 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 284 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 313 320 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 8.5E-71 T 13-10-2018 CDG55_10880 415cc0f0ab5feea724b231362804e9ba 477 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 354 461 5.8E-35 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDG55_02930 292575251a88b7fe2be24b18d87e4532 370 Pfam PF04982 HPP family 54 173 8.9E-40 T 13-10-2018 IPR007065 HPP CDG55_02930 292575251a88b7fe2be24b18d87e4532 370 Gene3D G3DSA:3.10.580.10 301 370 8.4E-13 T 13-10-2018 CDG55_02930 292575251a88b7fe2be24b18d87e4532 370 SUPERFAMILY SSF54631 236 363 3.97E-25 T 13-10-2018 CDG55_02930 292575251a88b7fe2be24b18d87e4532 370 SMART SM00116 244 292 0.086 T 13-10-2018 IPR000644 CBS domain CDG55_02930 292575251a88b7fe2be24b18d87e4532 370 SMART SM00116 312 359 2.5E-8 T 13-10-2018 IPR000644 CBS domain CDG55_02930 292575251a88b7fe2be24b18d87e4532 370 Gene3D G3DSA:3.10.580.10 196 295 6.2E-10 T 13-10-2018 CDG55_02930 292575251a88b7fe2be24b18d87e4532 370 Pfam PF00571 CBS domain 305 358 2.5E-11 T 13-10-2018 IPR000644 CBS domain CDG55_02930 292575251a88b7fe2be24b18d87e4532 370 Pfam PF00571 CBS domain 238 290 8.3E-8 T 13-10-2018 IPR000644 CBS domain CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 Gene3D G3DSA:3.30.470.20 1 235 1.6E-88 T 13-10-2018 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 PIRSF PIRSF001554 1 388 1.1E-148 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 SUPERFAMILY SSF52210 240 386 7.72E-53 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 Pfam PF08442 ATP-grasp domain 2 203 7.3E-78 T 13-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 387 42.902 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 Gene3D G3DSA:3.30.1490.20 21 105 1.6E-88 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 SUPERFAMILY SSF56059 1 239 1.9E-78 T 13-10-2018 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 Gene3D G3DSA:3.40.50.261 241 388 8.3E-55 T 13-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 386 1.7E-160 T 13-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_10875 7b273f81d7333cfdd12b6455ebeef1c6 388 Pfam PF00549 CoA-ligase 263 383 8.3E-25 T 13-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 SUPERFAMILY SSF52402 248 358 1.97E-7 T 13-10-2018 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 SUPERFAMILY SSF55874 715 879 9.82E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Gene3D G3DSA:1.10.287.130 650 724 1.2E-17 T 13-10-2018 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Gene3D G3DSA:3.30.565.10 733 882 1.1E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 SUPERFAMILY SSF47384 652 725 2.35E-15 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Gene3D G3DSA:1.20.120.620 398 502 2.7E-16 T 13-10-2018 IPR038318 KdpD, transmembrane domain superfamily CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 SMART SM00387 769 881 9.1E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 SMART SM00388 657 725 1.9E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Gene3D G3DSA:3.40.50.300 18 228 4.4E-93 T 13-10-2018 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 SUPERFAMILY SSF52540 26 143 8.66E-7 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 PRINTS PR00344 Bacterial sensor protein C-terminal signature 840 858 3.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 PRINTS PR00344 Bacterial sensor protein C-terminal signature 865 878 3.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 PRINTS PR00344 Bacterial sensor protein C-terminal signature 806 820 3.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 PRINTS PR00344 Bacterial sensor protein C-terminal signature 824 834 3.0E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 774 880 5.4E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Pfam PF13493 Domain of unknown function (DUF4118) 406 503 3.2E-18 T 13-10-2018 IPR025201 Sensor protein KdpD, transmembrane domain CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 21 229 5.9E-90 T 13-10-2018 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Gene3D G3DSA:3.30.450.40 513 649 2.0E-16 T 13-10-2018 IPR029016 GAF-like domain superfamily CDG55_11255 5b8a84f9cf00102a69d5388184e16b7f 882 Pfam PF00512 His Kinase A (phospho-acceptor) domain 658 724 1.3E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_03755 a4422f98d004b32aa35f17532b48dbe3 288 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 9 162 2.0E-42 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 CDG55_03755 a4422f98d004b32aa35f17532b48dbe3 288 PIRSF PIRSF000103 1 288 1.1E-60 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDG55_03755 a4422f98d004b32aa35f17532b48dbe3 288 Gene3D G3DSA:3.40.50.720 8 168 4.0E-46 T 13-10-2018 CDG55_03755 a4422f98d004b32aa35f17532b48dbe3 288 SUPERFAMILY SSF51735 8 163 1.31E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_03755 a4422f98d004b32aa35f17532b48dbe3 288 Gene3D G3DSA:1.10.1040.10 169 288 3.6E-28 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDG55_03755 a4422f98d004b32aa35f17532b48dbe3 288 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 285 1.2E-22 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDG55_03755 a4422f98d004b32aa35f17532b48dbe3 288 SUPERFAMILY SSF48179 163 287 1.7E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_12745 50ba6cede63171ca4199ef386f30d744 267 Gene3D G3DSA:3.40.50.720 1 267 6.6E-64 T 13-10-2018 CDG55_12745 50ba6cede63171ca4199ef386f30d744 267 PIRSF PIRSF000094 3 263 3.6E-112 T 13-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CDG55_12745 50ba6cede63171ca4199ef386f30d744 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 238 1.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12745 50ba6cede63171ca4199ef386f30d744 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 1.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12745 50ba6cede63171ca4199ef386f30d744 267 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 1.2E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12745 50ba6cede63171ca4199ef386f30d744 267 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 255 9.0E-86 T 13-10-2018 CDG55_12745 50ba6cede63171ca4199ef386f30d744 267 SUPERFAMILY SSF51735 8 258 2.21E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_03690 e31aa23c9f7a8fcb7da714231d47e1a2 184 SMART SM00479 8 181 4.3E-20 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CDG55_03690 e31aa23c9f7a8fcb7da714231d47e1a2 184 Gene3D G3DSA:3.30.420.10 1 184 6.6E-74 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_03690 e31aa23c9f7a8fcb7da714231d47e1a2 184 Pfam PF00929 Exonuclease 10 171 9.9E-33 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CDG55_03690 e31aa23c9f7a8fcb7da714231d47e1a2 184 Hamap MF_00045 Oligoribonuclease [orn]. 4 182 43.091 T 13-10-2018 IPR022894 Oligoribonuclease GO:0000175 CDG55_03690 e31aa23c9f7a8fcb7da714231d47e1a2 184 SUPERFAMILY SSF53098 5 180 1.47E-46 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_11540 2daa39a6848602c865b1d92f6446ac07 243 Pfam PF10411 Disulfide bond isomerase protein N-terminus 30 82 1.5E-19 T 13-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal CDG55_11540 2daa39a6848602c865b1d92f6446ac07 243 SUPERFAMILY SSF54423 35 86 1.14E-14 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CDG55_11540 2daa39a6848602c865b1d92f6446ac07 243 SUPERFAMILY SSF52833 91 236 5.71E-34 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_11540 2daa39a6848602c865b1d92f6446ac07 243 Gene3D G3DSA:3.40.30.10 103 243 5.3E-41 T 13-10-2018 CDG55_11540 2daa39a6848602c865b1d92f6446ac07 243 Gene3D G3DSA:3.10.450.70 22 86 5.4E-11 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CDG55_11540 2daa39a6848602c865b1d92f6446ac07 243 Pfam PF13098 Thioredoxin-like domain 112 236 1.4E-28 T 13-10-2018 IPR012336 Thioredoxin-like fold CDG55_11825 a055d3523304eaa40d70c5da89723553 556 Pfam PF00512 His Kinase A (phospho-acceptor) domain 335 398 1.0E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 SMART SM00387 443 555 1.7E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11825 a055d3523304eaa40d70c5da89723553 556 SUPERFAMILY SSF47384 319 400 2.35E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 Gene3D G3DSA:3.30.565.10 408 555 2.7E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11825 a055d3523304eaa40d70c5da89723553 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 480 494 1.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 508 1.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 533 1.4E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 SUPERFAMILY SSF55874 389 553 1.83E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11825 a055d3523304eaa40d70c5da89723553 556 Gene3D G3DSA:1.20.1480.50 246 340 4.8E-9 T 13-10-2018 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 SMART SM00388 335 399 2.3E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 Gene3D G3DSA:1.10.287.130 341 400 1.7E-10 T 13-10-2018 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 444 552 4.2E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11825 a055d3523304eaa40d70c5da89723553 556 SUPERFAMILY SSF158472 284 330 3.53E-7 T 13-10-2018 CDG55_11825 a055d3523304eaa40d70c5da89723553 556 SMART SM00304 282 334 1.8E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 160 17.213 T 13-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 Pfam PF00226 DnaJ domain 2 65 1.7E-10 T 13-10-2018 IPR001623 DnaJ domain CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 15 159 3.3E-27 T 13-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 SMART SM00271 1 61 1.7E-11 T 13-10-2018 IPR001623 DnaJ domain CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 Gene3D G3DSA:1.20.1280.20 75 161 1.8E-18 T 13-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 SUPERFAMILY SSF47144 75 161 6.54E-19 T 13-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 Pfam PF07743 HSCB C-terminal oligomerisation domain 82 153 3.0E-14 T 13-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 Gene3D G3DSA:1.10.287.110 1 68 5.9E-19 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CDG55_07020 bc3d42c66025b8dcfa8d5f2a5b86dfd0 172 SUPERFAMILY SSF46565 1 68 2.62E-15 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 SUPERFAMILY SSF55021 8 91 3.14E-14 T 13-10-2018 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 Gene3D G3DSA:3.30.70.260 5 90 5.6E-23 T 13-10-2018 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 117 144 3.3E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 95 117 3.3E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 261 286 3.3E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 11 37 3.3E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 44 56 3.3E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 239 261 3.3E-58 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 10 287 7.4E-118 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 Pfam PF00551 Formyl transferase 94 269 5.7E-36 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 SUPERFAMILY SSF53328 94 287 1.31E-56 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 PIRSF PIRSF036480 6 287 8.8E-112 T 13-10-2018 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 Gene3D G3DSA:3.40.50.170 94 287 9.0E-69 T 13-10-2018 CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 Pfam PF01842 ACT domain 10 71 1.6E-8 T 13-10-2018 IPR002912 ACT domain CDG55_12410 f7e94348576fd60ab48aaaf9c0cad5d3 287 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 6 287 44.414 T 13-10-2018 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|MetaCyc: PWY-7909 CDG55_09300 5bdda06167e12b044d5b39d6671e1784 385 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 358 9.2E-89 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CDG55_09300 5bdda06167e12b044d5b39d6671e1784 385 Gene3D G3DSA:1.20.1090.10 183 384 1.3E-47 T 13-10-2018 CDG55_09300 5bdda06167e12b044d5b39d6671e1784 385 SUPERFAMILY SSF56796 2 366 1.44E-107 T 13-10-2018 CDG55_09300 5bdda06167e12b044d5b39d6671e1784 385 Gene3D G3DSA:3.40.50.1970 1 182 6.0E-50 T 13-10-2018 CDG55_05710 f867f8ce9ef4ad3f12484c142963349f 304 Gene3D G3DSA:3.40.50.300 55 302 2.8E-63 T 13-10-2018 CDG55_05710 f867f8ce9ef4ad3f12484c142963349f 304 SMART SM00382 81 276 6.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_05710 f867f8ce9ef4ad3f12484c142963349f 304 Pfam PF00005 ABC transporter 73 228 7.1E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_05710 f867f8ce9ef4ad3f12484c142963349f 304 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 57 304 5.6E-123 T 13-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 CDG55_05710 f867f8ce9ef4ad3f12484c142963349f 304 SUPERFAMILY SSF52540 56 292 1.26E-57 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 Gene3D G3DSA:1.10.540.10 1 120 3.2E-39 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 PIRSF PIRSF016578 26 361 4.4E-15 T 13-10-2018 CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 SUPERFAMILY SSF56645 3 241 5.89E-78 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 Gene3D G3DSA:1.20.140.10 234 377 2.3E-39 T 13-10-2018 CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 9.0E-24 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 118 6.9E-34 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 Gene3D G3DSA:2.40.110.10 121 233 1.5E-40 T 13-10-2018 CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 SUPERFAMILY SSF47203 229 376 1.16E-41 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_12195 a3b0b387cf29ac78c63ae644a0bd28b0 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 375 1.3E-39 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_09100 4afe88ee4c66fb4a13b39a457fbd9afb 149 Pfam PF01220 Dehydroquinase class II 5 141 2.5E-62 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDG55_09100 4afe88ee4c66fb4a13b39a457fbd9afb 149 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 144 5.7E-63 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDG55_09100 4afe88ee4c66fb4a13b39a457fbd9afb 149 PIRSF PIRSF001399 1 148 1.7E-62 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDG55_09100 4afe88ee4c66fb4a13b39a457fbd9afb 149 Gene3D G3DSA:3.40.50.9100 1 149 5.5E-68 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDG55_09100 4afe88ee4c66fb4a13b39a457fbd9afb 149 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 149 73.168 T 13-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDG55_09100 4afe88ee4c66fb4a13b39a457fbd9afb 149 SUPERFAMILY SSF52304 4 147 1.31E-62 T 13-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 CDG55_09100 4afe88ee4c66fb4a13b39a457fbd9afb 149 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 142 1.0E-68 T 13-10-2018 CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 Gene3D G3DSA:3.30.450.20 42 166 6.0E-7 T 13-10-2018 CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 SUPERFAMILY SSF103190 37 178 1.06E-12 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 SMART SM00387 364 485 5.6E-19 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 Gene3D G3DSA:1.10.287.130 229 315 1.5E-13 T 13-10-2018 CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 Gene3D G3DSA:3.30.565.10 316 483 1.3E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 SUPERFAMILY SSF55874 309 462 9.3E-30 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 317 4.9E-14 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 SUPERFAMILY SSF47384 241 320 2.16E-14 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 366 464 8.8E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_14080 975483f678a3ba65189a1b9ef4c5eab4 488 SMART SM00388 254 319 6.5E-15 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_02450 137cfd32bffd024401258f4c16120f6b 272 Pfam PF13649 Methyltransferase domain 87 166 4.0E-12 T 13-10-2018 CDG55_02450 137cfd32bffd024401258f4c16120f6b 272 Gene3D G3DSA:3.40.50.150 3 268 1.7E-72 T 13-10-2018 CDG55_02450 137cfd32bffd024401258f4c16120f6b 272 PIRSF PIRSF018249 1 267 3.4E-89 T 13-10-2018 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 CDG55_02450 137cfd32bffd024401258f4c16120f6b 272 SUPERFAMILY SSF53335 6 248 7.1E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_12290 5bdaafd62c89b6cba5f55a0164ce3757 277 Gene3D G3DSA:1.20.120.1760 35 203 2.9E-12 T 13-10-2018 CDG55_12290 5bdaafd62c89b6cba5f55a0164ce3757 277 Pfam PF01066 CDP-alcohol phosphatidyltransferase 45 108 9.7E-13 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDG55_12290 5bdaafd62c89b6cba5f55a0164ce3757 277 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 52 216 7.6E-39 T 13-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 CDG55_00805 5da8e0fee88be71252185cd4abed3f86 426 SUPERFAMILY SSF161111 250 423 9.68E-31 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_00805 5da8e0fee88be71252185cd4abed3f86 426 SUPERFAMILY SSF55008 88 151 3.8E-10 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CDG55_00805 5da8e0fee88be71252185cd4abed3f86 426 SUPERFAMILY SSF55008 165 228 1.44E-10 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CDG55_00805 5da8e0fee88be71252185cd4abed3f86 426 Pfam PF01545 Cation efflux family 254 423 1.0E-11 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDG55_00805 5da8e0fee88be71252185cd4abed3f86 426 Gene3D G3DSA:3.30.70.100 82 154 2.4E-6 T 13-10-2018 CDG55_00805 5da8e0fee88be71252185cd4abed3f86 426 Gene3D G3DSA:3.30.70.100 155 235 1.9E-7 T 13-10-2018 CDG55_00805 5da8e0fee88be71252185cd4abed3f86 426 Gene3D G3DSA:1.20.1510.10 248 425 7.3E-13 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_06210 710374f4831ac9a90f5b30c2e0eb0aab 54 SUPERFAMILY SSF57802 1 53 4.38E-23 T 13-10-2018 CDG55_06210 710374f4831ac9a90f5b30c2e0eb0aab 54 Gene3D G3DSA:2.20.28.10 1 54 3.2E-29 T 13-10-2018 CDG55_06210 710374f4831ac9a90f5b30c2e0eb0aab 54 Pfam PF00301 Rubredoxin 3 49 6.0E-25 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CDG55_06210 710374f4831ac9a90f5b30c2e0eb0aab 54 PRINTS PR00163 Rubredoxin signature 33 49 1.4E-10 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CDG55_06210 710374f4831ac9a90f5b30c2e0eb0aab 54 PRINTS PR00163 Rubredoxin signature 3 19 1.4E-10 T 13-10-2018 IPR024935 Rubredoxin domain GO:0005506 CDG55_06210 710374f4831ac9a90f5b30c2e0eb0aab 54 PIRSF PIRSF000071 1 54 5.4E-26 T 13-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 CDG55_06145 1d55b87d85a9da1fc78f5d15a06eb1b6 194 Pfam PF08212 Lipocalin-like domain 46 192 7.7E-45 T 13-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain CDG55_06145 1d55b87d85a9da1fc78f5d15a06eb1b6 194 Gene3D G3DSA:2.40.128.20 28 193 1.2E-45 T 13-10-2018 IPR012674 Calycin CDG55_06145 1d55b87d85a9da1fc78f5d15a06eb1b6 194 PIRSF PIRSF036893 8 194 6.6E-52 T 13-10-2018 IPR022271 Lipocalin, ApoD type CDG55_06145 1d55b87d85a9da1fc78f5d15a06eb1b6 194 PRINTS PR01171 Bacterial lipocalin signature 46 60 5.7E-8 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CDG55_06145 1d55b87d85a9da1fc78f5d15a06eb1b6 194 PRINTS PR01171 Bacterial lipocalin signature 83 92 5.7E-8 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CDG55_06145 1d55b87d85a9da1fc78f5d15a06eb1b6 194 PRINTS PR01171 Bacterial lipocalin signature 155 166 5.7E-8 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CDG55_06145 1d55b87d85a9da1fc78f5d15a06eb1b6 194 PRINTS PR01171 Bacterial lipocalin signature 182 192 5.7E-8 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CDG55_06145 1d55b87d85a9da1fc78f5d15a06eb1b6 194 SUPERFAMILY SSF50814 37 193 1.87E-38 T 13-10-2018 IPR012674 Calycin CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 2.9E-29 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 186 204 2.9E-29 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 2.9E-29 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 2.9E-29 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 2.9E-29 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 16 38 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 49 64 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 186 211 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 159 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 437 457 3.4E-51 T 13-10-2018 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 SUPERFAMILY SSF55424 352 468 1.15E-29 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 PIRSF PIRSF000350 3 468 2.0E-67 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 Gene3D G3DSA:3.50.50.60 15 337 1.8E-87 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 Gene3D G3DSA:3.30.390.30 352 470 2.5E-31 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 SUPERFAMILY SSF51905 14 331 2.48E-53 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 334 1.3E-57 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 462 1.0E-26 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDG55_07580 6593dfc4ab5c48c04bc9817ca5d0b06b 471 Gene3D G3DSA:3.50.50.60 159 277 1.8E-87 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 15 211 5.6E-31 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 Gene3D G3DSA:3.40.1190.20 228 495 2.9E-69 T 13-10-2018 IPR029056 Ribokinase-like CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 224 494 19.185 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 Gene3D G3DSA:3.40.50.10260 2 218 1.3E-48 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 Pfam PF03853 YjeF-related protein N-terminus 27 194 1.3E-33 T 13-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 Pfam PF01256 Carbohydrate kinase 247 489 1.1E-48 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 SUPERFAMILY SSF64153 5 246 5.36E-50 T 13-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 SUPERFAMILY SSF53613 229 494 3.78E-57 T 13-10-2018 IPR029056 Ribokinase-like CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 230 494 2.7E-59 T 13-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 CDG55_07355 9e5c4f8c14f2507f48535ae4f1e537c5 497 PIRSF PIRSF017184 4 497 3.0E-107 T 13-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 CDG55_01050 1a4c05dca732f1fc3f24ba65ea00b511 441 SUPERFAMILY SSF53098 129 286 1.06E-17 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_01050 1a4c05dca732f1fc3f24ba65ea00b511 441 Gene3D G3DSA:3.30.420.10 125 321 1.5E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_01050 1a4c05dca732f1fc3f24ba65ea00b511 441 Pfam PF13384 Homeodomain-like domain 3 51 8.3E-10 T 13-10-2018 CDG55_01050 1a4c05dca732f1fc3f24ba65ea00b511 441 SUPERFAMILY SSF46689 8 110 8.42E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_00135 1a4c05dca732f1fc3f24ba65ea00b511 441 SUPERFAMILY SSF53098 129 286 1.06E-17 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_00135 1a4c05dca732f1fc3f24ba65ea00b511 441 Gene3D G3DSA:3.30.420.10 125 321 1.5E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_00135 1a4c05dca732f1fc3f24ba65ea00b511 441 Pfam PF13384 Homeodomain-like domain 3 51 8.3E-10 T 13-10-2018 CDG55_00135 1a4c05dca732f1fc3f24ba65ea00b511 441 SUPERFAMILY SSF46689 8 110 8.42E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_08605 1a4c05dca732f1fc3f24ba65ea00b511 441 SUPERFAMILY SSF53098 129 286 1.06E-17 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_08605 1a4c05dca732f1fc3f24ba65ea00b511 441 Gene3D G3DSA:3.30.420.10 125 321 1.5E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_08605 1a4c05dca732f1fc3f24ba65ea00b511 441 Pfam PF13384 Homeodomain-like domain 3 51 8.3E-10 T 13-10-2018 CDG55_08605 1a4c05dca732f1fc3f24ba65ea00b511 441 SUPERFAMILY SSF46689 8 110 8.42E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_01005 1a4c05dca732f1fc3f24ba65ea00b511 441 SUPERFAMILY SSF53098 129 286 1.06E-17 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_01005 1a4c05dca732f1fc3f24ba65ea00b511 441 Gene3D G3DSA:3.30.420.10 125 321 1.5E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_01005 1a4c05dca732f1fc3f24ba65ea00b511 441 Pfam PF13384 Homeodomain-like domain 3 51 8.3E-10 T 13-10-2018 CDG55_01005 1a4c05dca732f1fc3f24ba65ea00b511 441 SUPERFAMILY SSF46689 8 110 8.42E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_12445 60939a3aa626e683e2cd40936b05167a 334 Pfam PF01207 Dihydrouridine synthase (Dus) 13 310 1.3E-85 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDG55_12445 60939a3aa626e683e2cd40936b05167a 334 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 5 327 48.683 T 13-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 CDG55_12445 60939a3aa626e683e2cd40936b05167a 334 Gene3D G3DSA:3.20.20.70 7 247 3.1E-72 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_12445 60939a3aa626e683e2cd40936b05167a 334 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 10 314 5.6E-140 T 13-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 CDG55_12445 60939a3aa626e683e2cd40936b05167a 334 SUPERFAMILY SSF51395 9 311 1.33E-68 T 13-10-2018 CDG55_12445 60939a3aa626e683e2cd40936b05167a 334 PIRSF PIRSF006621 1 327 1.2E-75 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDG55_12445 60939a3aa626e683e2cd40936b05167a 334 Gene3D G3DSA:1.20.120.1460 250 332 2.9E-17 T 13-10-2018 CDG55_05900 0767fed5bee82af17ff145c0f0bfc1aa 279 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 4 225 36.763 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CDG55_05900 0767fed5bee82af17ff145c0f0bfc1aa 279 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 204 5.9E-29 T 13-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 CDG55_05900 0767fed5bee82af17ff145c0f0bfc1aa 279 SUPERFAMILY SSF53790 4 223 3.01E-80 T 13-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 CDG55_05900 0767fed5bee82af17ff145c0f0bfc1aa 279 PIRSF PIRSF005917 1 278 2.8E-100 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CDG55_05900 0767fed5bee82af17ff145c0f0bfc1aa 279 Gene3D G3DSA:3.30.950.10 112 232 4.8E-40 T 13-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 CDG55_05900 0767fed5bee82af17ff145c0f0bfc1aa 279 Gene3D G3DSA:3.40.1010.10 1 111 5.6E-44 T 13-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 CDG55_05900 0767fed5bee82af17ff145c0f0bfc1aa 279 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 5 273 7.2E-83 T 13-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 Gene3D G3DSA:2.40.30.10 208 336 1.2E-52 T 13-10-2018 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.5E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 SUPERFAMILY SSF50465 300 394 1.44E-36 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 Gene3D G3DSA:3.40.50.300 1 205 4.6E-69 T 13-10-2018 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 SUPERFAMILY SSF52540 6 221 1.35E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 5.0E-34 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 Gene3D G3DSA:2.40.30.10 340 394 5.2E-28 T 13-10-2018 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 SUPERFAMILY SSF50447 207 303 1.16E-29 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.6E-57 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 8.3E-226 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 1.9E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDG55_05035 a8da638b79447061b06c8d699b4a88c8 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.356 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 629 8.5E-221 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 173 218 1.5E-13 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 1.2E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 1.2E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 1.2E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 1.2E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 1.2E-51 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Gene3D G3DSA:3.30.930.10 222 530 8.2E-129 T 13-10-2018 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 SUPERFAMILY SSF55186 63 240 7.19E-64 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 SUPERFAMILY SSF52954 528 633 3.17E-30 T 13-10-2018 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 SMART SM00863 169 218 3.0E-20 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Gene3D G3DSA:3.10.20.30 3 63 9.4E-21 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Gene3D G3DSA:3.30.980.10 69 221 1.9E-59 T 13-10-2018 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Pfam PF02824 TGS domain 4 61 7.9E-12 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 321 528 2.8E-45 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Gene3D G3DSA:3.30.54.20 130 186 1.9E-59 T 13-10-2018 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 33.323 T 13-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 SUPERFAMILY SSF55681 242 525 2.68E-98 T 13-10-2018 CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Gene3D G3DSA:3.40.50.800 531 637 3.9E-29 T 13-10-2018 IPR036621 Anticodon-binding domain superfamily CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 Pfam PF03129 Anticodon binding domain 540 629 2.9E-20 T 13-10-2018 IPR004154 Anticodon-binding CDG55_03865 716b7635c6b6436bd7de44b5f26a6a60 640 SUPERFAMILY SSF81271 3 61 7.41E-16 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 SMART SM00564 143 174 1.9 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 SMART SM00564 102 134 8.0E-4 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 SMART SM00564 240 271 150.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 SMART SM00564 188 220 4.0 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 SMART SM00564 278 309 5.6E-4 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 SMART SM00564 319 350 0.1 T 13-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 Pfam PF13360 PQQ-like domain 77 308 1.9E-38 T 13-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 SUPERFAMILY SSF50998 31 367 1.22E-62 T 13-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 Gene3D G3DSA:2.130.10.10 38 379 3.2E-81 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 379 28.287 T 13-10-2018 IPR017687 Outer membrane protein assembly factor BamB CDG55_12060 3940004a439f2b01e69c8cca343b4bb9 380 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 8 378 7.2E-111 T 13-10-2018 IPR017687 Outer membrane protein assembly factor BamB CDG55_13025 34dd14b12253d98e319dfc4204836c31 453 Pfam PF01554 MatE 246 405 6.6E-28 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDG55_13025 34dd14b12253d98e319dfc4204836c31 453 Pfam PF01554 MatE 20 179 1.0E-28 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDG55_13025 34dd14b12253d98e319dfc4204836c31 453 TIGRFAM TIGR00797 matE: MATE efflux family protein 20 420 1.6E-87 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDG55_13025 34dd14b12253d98e319dfc4204836c31 453 PIRSF PIRSF006603 3 449 5.7E-62 T 13-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 CDG55_04545 365e7efee227fb08eda76995c16e325f 309 SUPERFAMILY SSF51395 2 308 1.41E-67 T 13-10-2018 CDG55_04545 365e7efee227fb08eda76995c16e325f 309 Pfam PF01207 Dihydrouridine synthase (Dus) 4 243 3.5E-70 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDG55_04545 365e7efee227fb08eda76995c16e325f 309 Gene3D G3DSA:1.20.225.30 244 308 1.1E-9 T 13-10-2018 CDG55_04545 365e7efee227fb08eda76995c16e325f 309 PIRSF PIRSF006621 1 309 5.5E-77 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDG55_04545 365e7efee227fb08eda76995c16e325f 309 Gene3D G3DSA:3.20.20.70 1 241 2.0E-75 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_04545 365e7efee227fb08eda76995c16e325f 309 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 309 48.664 T 13-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 CDG55_13955 4478c001720784bee07d42a491a112f5 430 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 29 345 3.7E-26 T 13-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 CDG55_13955 4478c001720784bee07d42a491a112f5 430 SUPERFAMILY SSF53335 23 357 1.88E-38 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_14815 f30dcef4fea2d8b9c5e6b7d651322b44 733 Pfam PF13614 AAA domain 543 689 6.7E-14 T 13-10-2018 IPR025669 AAA domain CDG55_14815 f30dcef4fea2d8b9c5e6b7d651322b44 733 Pfam PF13807 G-rich domain on putative tyrosine kinase 377 458 2.0E-30 T 13-10-2018 IPR032807 Tyrosine kinase, G-rich domain CDG55_14815 f30dcef4fea2d8b9c5e6b7d651322b44 733 Gene3D G3DSA:3.40.50.300 451 728 2.2E-77 T 13-10-2018 CDG55_14815 f30dcef4fea2d8b9c5e6b7d651322b44 733 Pfam PF02706 Chain length determinant protein 9 100 5.3E-20 T 13-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 CDG55_14815 f30dcef4fea2d8b9c5e6b7d651322b44 733 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 514 718 2.1E-50 T 13-10-2018 IPR005702 Exopolysaccharide synthesis protein GO:0045226 CDG55_14815 f30dcef4fea2d8b9c5e6b7d651322b44 733 SUPERFAMILY SSF46579 274 394 9.68E-5 T 13-10-2018 CDG55_14815 f30dcef4fea2d8b9c5e6b7d651322b44 733 SUPERFAMILY SSF52540 532 707 4.73E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08655 95f3938f419226b3f496fa749afb8ebf 101 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 85 3.0E-33 T 13-10-2018 IPR027354 YcgL domain CDG55_08655 95f3938f419226b3f496fa749afb8ebf 101 SUPERFAMILY SSF160191 1 85 3.4E-28 T 13-10-2018 IPR038068 YcgL-like superfamily CDG55_08655 95f3938f419226b3f496fa749afb8ebf 101 Hamap MF_01866 Protein YcgL [ycgL]. 1 95 23.575 T 13-10-2018 IPR027354 YcgL domain CDG55_08655 95f3938f419226b3f496fa749afb8ebf 101 Gene3D G3DSA:3.10.510.20 1 83 4.6E-31 T 13-10-2018 IPR038068 YcgL-like superfamily CDG55_08655 95f3938f419226b3f496fa749afb8ebf 101 Pfam PF05166 YcgL domain 3 84 7.3E-29 T 13-10-2018 IPR027354 YcgL domain CDG55_01325 f98057c876d17ead7f309c0c405d72ac 428 SUPERFAMILY SSF52833 241 422 6.15E-7 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_01620 0b4784af5521e56fa891317f86e4754e 179 Gene3D G3DSA:1.25.40.10 79 179 1.5E-33 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_01620 0b4784af5521e56fa891317f86e4754e 179 Gene3D G3DSA:1.20.58.320 1 78 5.1E-27 T 13-10-2018 CDG55_01620 0b4784af5521e56fa891317f86e4754e 179 SUPERFAMILY SSF48452 2 175 1.33E-67 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_01620 0b4784af5521e56fa891317f86e4754e 179 Pfam PF06041 Bacterial protein of unknown function (DUF924) 6 175 3.2E-63 T 13-10-2018 IPR010323 Protein of unknown function DUF924 CDG55_07750 17b5f6eec5a4c18371ed0de8d3c4654c 361 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 1 361 43.507 T 13-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 CDG55_07750 17b5f6eec5a4c18371ed0de8d3c4654c 361 Gene3D G3DSA:3.40.50.150 7 357 3.8E-135 T 13-10-2018 CDG55_07750 17b5f6eec5a4c18371ed0de8d3c4654c 361 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 4 360 5.2E-169 T 13-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 CDG55_07750 17b5f6eec5a4c18371ed0de8d3c4654c 361 SUPERFAMILY SSF53335 2 360 3.29E-54 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_07750 17b5f6eec5a4c18371ed0de8d3c4654c 361 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 4 360 2.1E-165 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CDG55_07750 17b5f6eec5a4c18371ed0de8d3c4654c 361 Gene3D G3DSA:3.40.1350.30 39 182 3.8E-135 T 13-10-2018 CDG55_10450 72a81669432f1d9e75451097f5bb9505 305 Pfam PF00589 Phage integrase family 116 287 4.2E-42 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_10450 72a81669432f1d9e75451097f5bb9505 305 SUPERFAMILY SSF56349 7 295 3.53E-54 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_10450 72a81669432f1d9e75451097f5bb9505 305 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 301 50.905 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD CDG55_10450 72a81669432f1d9e75451097f5bb9505 305 Gene3D G3DSA:1.10.443.10 112 295 1.1E-57 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_10450 72a81669432f1d9e75451097f5bb9505 305 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 16 87 4.3E-16 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDG55_10450 72a81669432f1d9e75451097f5bb9505 305 Gene3D G3DSA:1.10.150.130 3 107 1.0E-21 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_03255 cf681f026c44979a7f974afeb2882b4a 168 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 79 127 6.7E-8 T 13-10-2018 IPR018637 Domain of unknown function DUF2059 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 4 210 6.7E-77 T 13-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 224 293 8.8E-20 T 13-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 3 295 38.992 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 SUPERFAMILY SSF54782 219 304 2.88E-27 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 PIRSF PIRSF001438 1 305 3.3E-121 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 SUPERFAMILY SSF53850 2 216 1.85E-83 T 13-10-2018 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 Gene3D G3DSA:3.40.190.10 101 200 7.6E-83 T 13-10-2018 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 PRINTS PR00151 Porphobilinogen deaminase signature 122 139 1.5E-48 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 PRINTS PR00151 Porphobilinogen deaminase signature 43 63 1.5E-48 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 PRINTS PR00151 Porphobilinogen deaminase signature 228 245 1.5E-48 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 PRINTS PR00151 Porphobilinogen deaminase signature 141 158 1.5E-48 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 PRINTS PR00151 Porphobilinogen deaminase signature 74 93 1.5E-48 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 Gene3D G3DSA:3.40.190.10 4 207 7.6E-83 T 13-10-2018 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 4 295 6.0E-115 T 13-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13780 8d3cf361448b15b6d1bf483cd07cf069 305 Gene3D G3DSA:3.30.160.40 219 304 4.0E-29 T 13-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_14900 7e9453de6bb7fe8d08fc485080e75d32 330 Gene3D G3DSA:3.40.190.10 124 223 1.5E-106 T 13-10-2018 CDG55_14900 7e9453de6bb7fe8d08fc485080e75d32 330 Pfam PF09084 NMT1/THI5 like 70 264 1.3E-18 T 13-10-2018 IPR015168 SsuA/THI5-like CDG55_14900 7e9453de6bb7fe8d08fc485080e75d32 330 SUPERFAMILY SSF53850 43 274 1.78E-50 T 13-10-2018 CDG55_14900 7e9453de6bb7fe8d08fc485080e75d32 330 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 54 325 8.8E-71 T 13-10-2018 IPR010067 Aliphatic sulfonates-binding protein GO:0016020|GO:0042626 CDG55_14900 7e9453de6bb7fe8d08fc485080e75d32 330 SMART SM00062 44 260 8.8E-21 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDG55_14900 7e9453de6bb7fe8d08fc485080e75d32 330 Gene3D G3DSA:3.40.190.10 45 317 1.5E-106 T 13-10-2018 CDG55_14900 7e9453de6bb7fe8d08fc485080e75d32 330 Gene3D G3DSA:1.10.8.450 255 287 1.5E-106 T 13-10-2018 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 Gene3D G3DSA:3.90.930.12 1 82 1.1E-26 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 4.6E-72 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 PIRSF PIRSF002162 1 177 3.2E-44 T 13-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 Gene3D G3DSA:3.90.930.12 83 177 6.2E-38 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 35.249 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.2E-32 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.2E-32 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.2E-32 T 13-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 Pfam PF00347 Ribosomal protein L6 11 82 9.4E-17 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 Pfam PF00347 Ribosomal protein L6 90 164 1.4E-17 T 13-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 SUPERFAMILY SSF56053 83 177 1.44E-34 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03185 8853348fcc34329d38bebbbe1026faad 177 SUPERFAMILY SSF56053 1 82 1.27E-22 T 13-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 SUPERFAMILY SSF82866 811 1043 3.27E-42 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Gene3D G3DSA:3.30.2090.10 179 275 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 SUPERFAMILY SSF82693 569 666 1.05E-25 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Gene3D G3DSA:1.20.1640.10 8 516 0.0 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Gene3D G3DSA:3.30.70.1320 133 332 0.0 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 SUPERFAMILY SSF82714 182 272 4.97E-24 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1052 0.0 T 13-10-2018 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0006855|GO:0015562|GO:0016021 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 SUPERFAMILY SSF82693 135 330 3.14E-22 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 SUPERFAMILY SSF82693 38 131 3.4E-28 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Gene3D G3DSA:3.30.2090.10 726 814 0.0 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 SUPERFAMILY SSF82714 727 814 1.57E-22 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Pfam PF00873 AcrB/AcrD/AcrF family 1 1041 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Gene3D G3DSA:1.20.1640.10 517 1038 0.0 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 556 573 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 PRINTS PR00702 Acriflavin resistance protein family signature 625 639 1.3E-109 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Gene3D G3DSA:3.30.70.1430 571 673 0.0 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Gene3D G3DSA:3.30.70.1430 38 822 0.0 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 Gene3D G3DSA:3.30.70.1440 674 874 0.0 T 13-10-2018 CDG55_11070 0f178b587c9c4043756321f72c7b7d50 1057 SUPERFAMILY SSF82866 296 497 3.14E-47 T 13-10-2018 CDG55_10625 fad7745cadf403f319d1920ab8a59d72 324 PIRSF PIRSF017020 1 324 4.9E-116 T 13-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 CDG55_10625 fad7745cadf403f319d1920ab8a59d72 324 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 44 320 3.4E-57 T 13-10-2018 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0016788 CDG55_10625 fad7745cadf403f319d1920ab8a59d72 324 SUPERFAMILY SSF53187 1 320 1.12E-80 T 13-10-2018 CDG55_10625 fad7745cadf403f319d1920ab8a59d72 324 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 3 320 5.6E-135 T 13-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 CDG55_10625 fad7745cadf403f319d1920ab8a59d72 324 Gene3D G3DSA:3.40.630.10 1 324 1.7E-110 T 13-10-2018 CDG55_10625 fad7745cadf403f319d1920ab8a59d72 324 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 324 132.538 T 13-10-2018 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 CDG55_12385 4bf6fad07b9d182b02f2788cf5ef19d0 351 Pfam PF13387 Domain of unknown function (DUF4105) 137 291 1.7E-45 T 13-10-2018 IPR025178 Domain of unknown function DUF4105 CDG55_13855 30a02b73efbce7ac17e21a098439a7e9 617 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 7 27 4.4E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_13855 30a02b73efbce7ac17e21a098439a7e9 617 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 28 46 4.4E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_13855 30a02b73efbce7ac17e21a098439a7e9 617 Pfam PF07670 Nucleoside recognition 451 587 6.2E-25 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CDG55_13855 30a02b73efbce7ac17e21a098439a7e9 617 Pfam PF07670 Nucleoside recognition 283 374 1.9E-11 T 13-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 CDG55_13855 30a02b73efbce7ac17e21a098439a7e9 617 Pfam PF07664 Ferrous iron transport protein B C terminus 394 446 1.0E-12 T 13-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 CDG55_13855 30a02b73efbce7ac17e21a098439a7e9 617 SUPERFAMILY SSF52540 5 170 5.26E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13855 30a02b73efbce7ac17e21a098439a7e9 617 Gene3D G3DSA:3.40.50.300 5 207 1.4E-45 T 13-10-2018 CDG55_13855 30a02b73efbce7ac17e21a098439a7e9 617 Pfam PF02421 Ferrous iron transport protein B 6 165 5.8E-57 T 13-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 CDG55_09150 e0e2bb3bacae1628e37405cec8d88924 386 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 376 7.5E-108 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CDG55_09150 e0e2bb3bacae1628e37405cec8d88924 386 Gene3D G3DSA:3.40.50.1970 1 185 1.9E-50 T 13-10-2018 CDG55_09150 e0e2bb3bacae1628e37405cec8d88924 386 SUPERFAMILY SSF56796 1 385 1.06E-114 T 13-10-2018 CDG55_09150 e0e2bb3bacae1628e37405cec8d88924 386 Gene3D G3DSA:1.20.1090.10 186 384 7.9E-59 T 13-10-2018 CDG55_13630 5a072d8bf24277d95269347561390b93 194 SUPERFAMILY SSF56925 19 194 2.17E-18 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CDG55_13630 5a072d8bf24277d95269347561390b93 194 Pfam PF03922 OmpW family 19 194 1.1E-28 T 13-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 CDG55_13630 5a072d8bf24277d95269347561390b93 194 Gene3D G3DSA:2.40.160.20 18 194 1.0E-30 T 13-10-2018 CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 Gene3D G3DSA:3.40.50.1000 4 191 3.4E-50 T 13-10-2018 IPR023214 HAD superfamily CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 SUPERFAMILY SSF56784 1 217 8.68E-54 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 Gene3D G3DSA:1.10.150.240 16 84 3.4E-50 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 90 178 5.7E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 91 184 8.2E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 Pfam PF13419 Haloacid dehalogenase-like hydrolase 4 184 9.7E-35 T 13-10-2018 CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 129 145 5.4E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 98 111 5.4E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 147 167 5.4E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_14880 8dc74dc68223ae4c681e6a58f2e94eca 232 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 1 12 5.4E-6 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_06165 cf39221778919e968732dff0d60311cb 485 SUPERFAMILY SSF55347 292 455 1.13E-55 T 13-10-2018 CDG55_06165 cf39221778919e968732dff0d60311cb 485 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 133 466 8.9E-114 T 13-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_06165 cf39221778919e968732dff0d60311cb 485 Gene3D G3DSA:3.30.360.10 291 456 1.6E-114 T 13-10-2018 CDG55_06165 cf39221778919e968732dff0d60311cb 485 SMART SM00846 131 292 1.1E-51 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_06165 cf39221778919e968732dff0d60311cb 485 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 297 454 2.1E-47 T 13-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_06165 cf39221778919e968732dff0d60311cb 485 Gene3D G3DSA:3.40.50.720 133 467 1.6E-114 T 13-10-2018 CDG55_06165 cf39221778919e968732dff0d60311cb 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 286 304 9.1E-20 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_06165 cf39221778919e968732dff0d60311cb 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 313 329 9.1E-20 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_06165 cf39221778919e968732dff0d60311cb 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 369 386 9.1E-20 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_06165 cf39221778919e968732dff0d60311cb 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 410 425 9.1E-20 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_06165 cf39221778919e968732dff0d60311cb 485 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 250 263 9.1E-20 T 13-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_06165 cf39221778919e968732dff0d60311cb 485 SUPERFAMILY SSF51735 132 308 2.44E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_06165 cf39221778919e968732dff0d60311cb 485 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 132 242 3.5E-21 T 13-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07790 a94d8080bb2b504fde4c2f48cfd85ede 616 SUPERFAMILY SSF90123 29 342 9.29E-45 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CDG55_07790 a94d8080bb2b504fde4c2f48cfd85ede 616 SMART SM00382 385 576 8.9E-20 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_07790 a94d8080bb2b504fde4c2f48cfd85ede 616 SUPERFAMILY SSF52540 350 600 1.95E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_07790 a94d8080bb2b504fde4c2f48cfd85ede 616 Gene3D G3DSA:1.20.1560.10 27 348 5.0E-24 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CDG55_07790 a94d8080bb2b504fde4c2f48cfd85ede 616 Pfam PF00005 ABC transporter 377 530 7.0E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_07790 a94d8080bb2b504fde4c2f48cfd85ede 616 Gene3D G3DSA:3.40.50.300 351 604 1.3E-88 T 13-10-2018 CDG55_07790 a94d8080bb2b504fde4c2f48cfd85ede 616 Pfam PF00664 ABC transporter transmembrane region 40 306 1.5E-15 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CDG55_08105 af57d4233b4748bdf356fbc3ce8fa29a 128 Pfam PF02501 Type II secretion system (T2SS), protein I 43 102 1.2E-9 T 13-10-2018 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 CDG55_08105 af57d4233b4748bdf356fbc3ce8fa29a 128 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 26 2.9E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_08105 af57d4233b4748bdf356fbc3ce8fa29a 128 TIGRFAM TIGR01707 gspI: type II secretion system protein I 7 102 1.8E-13 T 13-10-2018 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 CDG55_08105 af57d4233b4748bdf356fbc3ce8fa29a 128 Gene3D G3DSA:3.30.1300.30 34 121 6.6E-11 T 13-10-2018 CDG55_08105 af57d4233b4748bdf356fbc3ce8fa29a 128 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 4.2E-8 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_08105 af57d4233b4748bdf356fbc3ce8fa29a 128 SUPERFAMILY SSF54523 43 107 9.42E-14 T 13-10-2018 CDG55_11780 7bb8e6b03406fc414a3c01bf54709158 414 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 18 407 51.961 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDG55_11780 7bb8e6b03406fc414a3c01bf54709158 414 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 23 405 1.8E-189 T 13-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDG55_11780 7bb8e6b03406fc414a3c01bf54709158 414 PIRSF PIRSF001413 3 412 2.4E-165 T 13-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDG55_11780 7bb8e6b03406fc414a3c01bf54709158 414 Gene3D G3DSA:3.40.50.1100 70 400 8.3E-185 T 13-10-2018 CDG55_11780 7bb8e6b03406fc414a3c01bf54709158 414 Gene3D G3DSA:3.40.50.1100 26 222 8.3E-185 T 13-10-2018 CDG55_11780 7bb8e6b03406fc414a3c01bf54709158 414 SUPERFAMILY SSF53686 19 405 2.88E-148 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDG55_11780 7bb8e6b03406fc414a3c01bf54709158 414 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 69 394 3.7E-47 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CDG55_06320 627af332a612e27fc76197eb7da8023f 222 SUPERFAMILY SSF53335 4 221 1.9E-35 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_06320 627af332a612e27fc76197eb7da8023f 222 Gene3D G3DSA:3.40.50.150 1 222 4.0E-61 T 13-10-2018 CDG55_06320 627af332a612e27fc76197eb7da8023f 222 Pfam PF01596 O-methyltransferase 32 183 1.4E-38 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 CDG55_12930 544a0df56b4260a5ea2b0f698be70c5f 216 Gene3D G3DSA:3.40.50.1000 3 211 2.6E-69 T 13-10-2018 IPR023214 HAD superfamily CDG55_12930 544a0df56b4260a5ea2b0f698be70c5f 216 SUPERFAMILY SSF56784 1 210 4.99E-31 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_12930 544a0df56b4260a5ea2b0f698be70c5f 216 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 183 1.1E-31 T 13-10-2018 CDG55_12930 544a0df56b4260a5ea2b0f698be70c5f 216 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 199 3.8E-39 T 13-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like CDG55_12930 544a0df56b4260a5ea2b0f698be70c5f 216 Gene3D G3DSA:1.20.1440.100 15 88 2.6E-69 T 13-10-2018 CDG55_12930 544a0df56b4260a5ea2b0f698be70c5f 216 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 186 1.8E-19 T 13-10-2018 CDG55_13730 7dc8436587d14e399d574b15c963a067 230 Gene3D G3DSA:3.40.50.1000 12 216 4.7E-63 T 13-10-2018 IPR023214 HAD superfamily CDG55_13730 7dc8436587d14e399d574b15c963a067 230 SUPERFAMILY SSF56784 10 221 8.81E-59 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_13730 7dc8436587d14e399d574b15c963a067 230 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 111 189 1.5E-8 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_13730 7dc8436587d14e399d574b15c963a067 230 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 76 195 1.3E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_13730 7dc8436587d14e399d574b15c963a067 230 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 195 2.6E-36 T 13-10-2018 CDG55_13730 7dc8436587d14e399d574b15c963a067 230 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 12 221 3.0E-60 T 13-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 CDG55_13730 7dc8436587d14e399d574b15c963a067 230 Gene3D G3DSA:1.10.150.240 24 94 4.7E-63 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 2 893 18.497 T 13-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 587 616 5.9E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 250 265 5.9E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 191 207 5.9E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 389 409 5.9E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 545 565 5.9E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 719 745 5.9E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 138 151 5.9E-68 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 Gene3D G3DSA:1.20.1440.90 307 392 2.6E-22 T 13-10-2018 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 SUPERFAMILY SSF51621 10 893 7.38E-303 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CDG55_01335 ff60ef6249383278d0a954abc0af812d 893 Pfam PF00311 Phosphoenolpyruvate carboxylase 134 893 7.4E-280 T 13-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 CDG55_07075 3ce9b2af7031be1cc100cfd573a8792a 160 Gene3D G3DSA:1.10.10.10 109 158 7.4E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07075 3ce9b2af7031be1cc100cfd573a8792a 160 Pfam PF02631 RecX family 44 156 1.3E-25 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 CDG55_07075 3ce9b2af7031be1cc100cfd573a8792a 160 Hamap MF_01114 Regulatory protein RecX [recX]. 4 160 13.037 T 13-10-2018 IPR003783 Regulatory protein RecX GO:0006282 CDG55_07075 3ce9b2af7031be1cc100cfd573a8792a 160 Gene3D G3DSA:1.10.10.10 65 108 7.4E-8 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07075 3ce9b2af7031be1cc100cfd573a8792a 160 Gene3D G3DSA:1.10.10.10 20 63 1.5E-7 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_06500 99ac674d3adb7415a971798fff87e41c 243 SUPERFAMILY SSF101322 13 236 7.06E-49 T 13-10-2018 IPR035932 HflD-like superfamily CDG55_06500 99ac674d3adb7415a971798fff87e41c 243 Pfam PF04356 Protein of unknown function (DUF489) 17 230 1.1E-51 T 13-10-2018 IPR007451 High frequency lysogenization protein HflD CDG55_06500 99ac674d3adb7415a971798fff87e41c 243 Gene3D G3DSA:1.10.3890.10 12 242 2.0E-57 T 13-10-2018 IPR035932 HflD-like superfamily CDG55_06500 99ac674d3adb7415a971798fff87e41c 243 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 20 229 1.0E-104 T 13-10-2018 CDG55_05530 6308a4eedd7948e5706042327445534e 347 Pfam PF03060 Nitronate monooxygenase 4 342 5.5E-72 T 13-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 CDG55_05530 6308a4eedd7948e5706042327445534e 347 Gene3D G3DSA:3.20.20.70 1 345 1.9E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_05530 6308a4eedd7948e5706042327445534e 347 SUPERFAMILY SSF51412 3 338 2.14E-54 T 13-10-2018 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 442 456 2.7E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 470 2.7E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 495 2.7E-9 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 Pfam PF00512 His Kinase A (phospho-acceptor) domain 288 354 3.2E-21 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 SUPERFAMILY SSF47226 804 928 8.39E-15 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 Gene3D G3DSA:3.40.50.2300 652 794 1.5E-36 T 13-10-2018 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 SMART SM00388 288 354 2.5E-23 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 Pfam PF00072 Response regulator receiver domain 665 786 5.9E-22 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 SMART SM00387 401 522 7.9E-35 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 Gene3D G3DSA:1.20.120.160 810 934 2.8E-23 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 Pfam PF01627 Hpt domain 833 926 1.6E-10 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 Gene3D G3DSA:1.10.287.130 250 352 2.2E-26 T 13-10-2018 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 Gene3D G3DSA:3.30.565.10 353 527 4.2E-49 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 SUPERFAMILY SSF47384 274 355 2.94E-22 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 SUPERFAMILY SSF52172 661 838 5.55E-33 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 SMART SM00448 663 786 1.3E-31 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 SUPERFAMILY SSF55874 343 517 3.01E-41 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_03765 2a91021ca1632af2c98208874f92b8bb 936 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 401 519 3.8E-26 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 9 512 48.145 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 SUPERFAMILY SSF53649 11 511 1.02E-68 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 Gene3D G3DSA:3.40.1450.10 82 312 4.2E-204 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 11 511 2.2E-215 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 Pfam PF01676 Metalloenzyme superfamily 11 499 2.3E-76 T 13-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 SUPERFAMILY SSF64158 82 310 2.62E-79 T 13-10-2018 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily GO:0004619|GO:0005737 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 Gene3D G3DSA:3.40.720.10 10 509 4.2E-204 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 PIRSF PIRSF001492 4 514 1.8E-194 T 13-10-2018 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_13915 1e70bda523f849acf7ad1106de3d0e51 514 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 87 299 5.1E-75 T 13-10-2018 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 Gene3D G3DSA:1.10.8.60 298 368 1.6E-21 T 13-10-2018 CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 SUPERFAMILY SSF48295 364 466 9.42E-33 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 SMART SM00382 164 294 1.1E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 376 444 4.6E-28 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 1 466 29.432 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 Gene3D G3DSA:3.40.50.300 129 297 3.5E-45 T 13-10-2018 CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 SUPERFAMILY SSF52540 131 344 3.12E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 SMART SM00760 375 444 3.0E-39 T 13-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 Gene3D G3DSA:1.10.1750.10 374 467 2.9E-31 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 Pfam PF00308 Bacterial dnaA protein 131 349 1.9E-83 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 Pfam PF11638 DnaA N-terminal domain 2 60 4.0E-12 T 13-10-2018 IPR024633 DnaA N-terminal domain CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 Gene3D G3DSA:3.30.300.180 1 103 2.6E-19 T 13-10-2018 IPR038454 DnaA, N-terminal domain superfamily CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 263 290 1.1E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 425 444 1.1E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 165 185 1.1E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 197 211 1.1E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 229 243 1.1E-48 T 13-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like CDG55_01175 c346ba5f3d93b7ac087d4118cef265b4 467 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 3 464 6.1E-153 T 13-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 SUPERFAMILY SSF53067 259 502 6.47E-84 T 13-10-2018 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 Hamap MF_00186 Glycerol kinase [glpK]. 8 502 58.587 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 9 501 7.1E-224 T 13-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 266 455 2.4E-62 T 13-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 10 257 2.8E-87 T 13-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 SUPERFAMILY SSF53067 9 260 1.19E-95 T 13-10-2018 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 Gene3D G3DSA:3.30.420.40 6 258 1.3E-110 T 13-10-2018 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 PIRSF PIRSF000538 8 504 1.2E-175 T 13-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 CDG55_05385 d3190981383c673d5b67d18b8acec58b 504 Gene3D G3DSA:3.30.420.40 259 504 1.8E-93 T 13-10-2018 CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 Gene3D G3DSA:2.40.30.10 191 343 1.6E-122 T 13-10-2018 CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 158 167 1.1E-7 T 13-10-2018 CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.1E-7 T 13-10-2018 CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 366 373 1.1E-7 T 13-10-2018 CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 SUPERFAMILY SSF160996 193 344 8.89E-32 T 13-10-2018 CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 Gene3D G3DSA:3.50.50.60 8 391 1.6E-122 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 Gene3D G3DSA:1.10.8.260 264 326 1.6E-122 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 SUPERFAMILY SSF51905 1 397 3.76E-56 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 396 2.1E-120 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CDG55_04430 c28764ca199dfeb38805d7e753c61d69 398 Pfam PF03486 HI0933-like protein 6 396 1.0E-140 T 13-10-2018 CDG55_07065 cc0a27c1a3c63ec6270b6a3d40bc1bc2 287 SUPERFAMILY SSF48452 170 252 2.66E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_07065 cc0a27c1a3c63ec6270b6a3d40bc1bc2 287 Pfam PF13174 Tetratricopeptide repeat 173 200 0.12 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_07065 cc0a27c1a3c63ec6270b6a3d40bc1bc2 287 Pfam PF13174 Tetratricopeptide repeat 207 240 0.004 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_07065 cc0a27c1a3c63ec6270b6a3d40bc1bc2 287 Pfam PF16331 TolA binding protein trimerisation 44 98 1.5E-10 T 13-10-2018 IPR032519 YbgF, trimerisation domain GO:0070206 CDG55_07065 cc0a27c1a3c63ec6270b6a3d40bc1bc2 287 Gene3D G3DSA:1.25.40.10 168 287 3.6E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_03205 1badb2426e2672fb4549cb15c8ea481f 146 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 30 145 3.2E-26 T 13-10-2018 IPR021131 Ribosomal protein L18e/L15P CDG55_03205 1badb2426e2672fb4549cb15c8ea481f 146 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 4 145 3.8E-44 T 13-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03205 1badb2426e2672fb4549cb15c8ea481f 146 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 5 146 17.913 T 13-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 CDG55_03205 1badb2426e2672fb4549cb15c8ea481f 146 Gene3D G3DSA:3.100.10.10 73 146 7.9E-12 T 13-10-2018 CDG55_03205 1badb2426e2672fb4549cb15c8ea481f 146 SUPERFAMILY SSF52080 6 145 5.23E-41 T 13-10-2018 IPR036227 Ribosomal L18e/L15P superfamily CDG55_03940 2cc94ead5be9bb04a3666eb35a9d3bd5 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 3.4E-36 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CDG55_03940 2cc94ead5be9bb04a3666eb35a9d3bd5 108 SUPERFAMILY SSF52833 4 107 1.97E-36 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_03940 2cc94ead5be9bb04a3666eb35a9d3bd5 108 Pfam PF00085 Thioredoxin 5 106 4.0E-35 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CDG55_03940 2cc94ead5be9bb04a3666eb35a9d3bd5 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.3E-7 T 13-10-2018 CDG55_03940 2cc94ead5be9bb04a3666eb35a9d3bd5 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.3E-7 T 13-10-2018 CDG55_03940 2cc94ead5be9bb04a3666eb35a9d3bd5 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.3E-7 T 13-10-2018 CDG55_03940 2cc94ead5be9bb04a3666eb35a9d3bd5 108 PIRSF PIRSF000077 2 108 1.4E-39 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CDG55_03940 2cc94ead5be9bb04a3666eb35a9d3bd5 108 Gene3D G3DSA:3.40.30.10 1 108 7.0E-35 T 13-10-2018 CDG55_09350 dc83a32975985d99a8449f33e988fc3c 332 SUPERFAMILY SSF50129 13 135 1.67E-29 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_09350 dc83a32975985d99a8449f33e988fc3c 332 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 332 1.3E-151 T 13-10-2018 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 CDG55_09350 dc83a32975985d99a8449f33e988fc3c 332 Pfam PF13602 Zinc-binding dehydrogenase 189 329 1.0E-19 T 13-10-2018 CDG55_09350 dc83a32975985d99a8449f33e988fc3c 332 SMART SM00829 9 329 5.2E-11 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDG55_09350 dc83a32975985d99a8449f33e988fc3c 332 Gene3D G3DSA:3.40.50.720 126 268 1.9E-103 T 13-10-2018 CDG55_09350 dc83a32975985d99a8449f33e988fc3c 332 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 87 2.8E-8 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDG55_09350 dc83a32975985d99a8449f33e988fc3c 332 SUPERFAMILY SSF51735 115 276 5.24E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09350 dc83a32975985d99a8449f33e988fc3c 332 Gene3D G3DSA:3.90.180.10 24 329 1.9E-103 T 13-10-2018 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 SUPERFAMILY SSF52943 2 289 1.31E-92 T 13-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 289 3.5E-105 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 Gene3D G3DSA:1.10.287.80 6 285 3.0E-103 T 13-10-2018 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 289 36.139 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 Gene3D G3DSA:3.40.1380.10 61 208 3.0E-103 T 13-10-2018 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 Pfam PF00231 ATP synthase 3 288 7.9E-95 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.7E-34 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 PRINTS PR00126 ATP synthase gamma subunit signature 267 288 1.7E-34 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.7E-34 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14265 24b2029c47e43893bec4b0e6a8cec5b8 289 PRINTS PR00126 ATP synthase gamma subunit signature 236 255 1.7E-34 T 13-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14805 92bf58ff9d05104b99e09ddfa71d0498 366 Gene3D G3DSA:3.10.560.10 48 336 9.8E-78 T 13-10-2018 CDG55_14805 92bf58ff9d05104b99e09ddfa71d0498 366 Gene3D G3DSA:3.30.1950.10 82 166 9.8E-78 T 13-10-2018 CDG55_14805 92bf58ff9d05104b99e09ddfa71d0498 366 Gene3D G3DSA:3.10.560.10 60 251 9.8E-78 T 13-10-2018 CDG55_14805 92bf58ff9d05104b99e09ddfa71d0498 366 Pfam PF02563 Polysaccharide biosynthesis/export protein 75 162 2.1E-20 T 13-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 SUPERFAMILY SSF103473 8 461 6.28E-69 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 Gene3D G3DSA:1.20.1720.10 16 220 3.3E-47 T 13-10-2018 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 Gene3D G3DSA:1.20.1250.20 261 464 3.3E-18 T 13-10-2018 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 Pfam PF07690 Major Facilitator Superfamily 21 411 8.7E-46 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 402 421 9.8E-9 T 13-10-2018 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 205 223 9.8E-9 T 13-10-2018 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 19 43 9.8E-9 T 13-10-2018 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 9.8E-9 T 13-10-2018 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 PRINTS PR01036 Tetracycline resistance protein TetB signature 140 164 9.8E-9 T 13-10-2018 CDG55_14055 a3c7ac1bd8b6a471fdb9e260fb442574 465 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 429 2.5E-82 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 CDG55_15055 66a71ac085e8ba26df32aba33431b917 170 SUPERFAMILY SSF52255 11 166 1.57E-66 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 CDG55_15055 66a71ac085e8ba26df32aba33431b917 170 Gene3D G3DSA:3.40.50.7700 1 169 1.8E-73 T 13-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 CDG55_15055 66a71ac085e8ba26df32aba33431b917 170 Pfam PF00731 AIR carboxylase 12 159 3.6E-63 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDG55_15055 66a71ac085e8ba26df32aba33431b917 170 PIRSF PIRSF001338 7 167 3.7E-66 T 13-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 CDG55_15055 66a71ac085e8ba26df32aba33431b917 170 SMART SM01001 10 161 6.1E-103 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDG55_15055 66a71ac085e8ba26df32aba33431b917 170 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 12 165 3.5E-65 T 13-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 CDG55_15055 66a71ac085e8ba26df32aba33431b917 170 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 12 165 32.107 T 13-10-2018 IPR033747 Class I PurE CDG55_10455 899550793520483db9b5f30b7ccd5c09 204 Pfam PF01810 LysE type translocator 14 202 1.0E-31 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_10455 899550793520483db9b5f30b7ccd5c09 204 PIRSF PIRSF006324 1 204 3.0E-48 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Pfam PF00580 UvrD/REP helicase N-terminal domain 19 473 1.5E-46 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 3 1230 15.806 T 13-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Gene3D G3DSA:3.40.50.300 487 870 1.8E-69 T 13-10-2018 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Pfam PF13361 UvrD-like helicase C-terminal domain 482 860 8.8E-31 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Gene3D G3DSA:1.10.3170.10 162 383 3.5E-73 T 13-10-2018 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 SUPERFAMILY SSF52980 928 1229 1.61E-57 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Gene3D G3DSA:3.90.320.10 921 1235 4.1E-71 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Gene3D G3DSA:1.10.486.10 613 759 1.8E-69 T 13-10-2018 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Gene3D G3DSA:3.40.50.300 15 473 3.5E-73 T 13-10-2018 CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 SUPERFAMILY SSF52540 18 862 4.0E-90 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13250 b78c7c813572c7c52bd2d2e5531288f7 1241 Pfam PF12705 PD-(D/E)XK nuclease superfamily 992 1201 4.7E-6 T 13-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CDG55_11155 ad3a792badbb20686e1c68e1b567d01a 225 Gene3D G3DSA:3.40.50.2300 1 122 1.6E-36 T 13-10-2018 CDG55_11155 ad3a792badbb20686e1c68e1b567d01a 225 SMART SM00862 151 222 2.0E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_11155 ad3a792badbb20686e1c68e1b567d01a 225 SUPERFAMILY SSF46894 127 222 2.69E-25 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_11155 ad3a792badbb20686e1c68e1b567d01a 225 Pfam PF00072 Response regulator receiver domain 4 112 1.4E-25 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11155 ad3a792badbb20686e1c68e1b567d01a 225 SUPERFAMILY SSF52172 1 129 2.7E-38 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_11155 ad3a792badbb20686e1c68e1b567d01a 225 SMART SM00448 2 112 5.1E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11155 ad3a792badbb20686e1c68e1b567d01a 225 Gene3D G3DSA:1.10.10.10 127 224 1.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_11155 ad3a792badbb20686e1c68e1b567d01a 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 222 2.0E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_05415 aa86ea34d5efd44c5d6844651ef6e9e1 312 Gene3D G3DSA:3.40.50.10330 3 139 3.2E-24 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 CDG55_05415 aa86ea34d5efd44c5d6844651ef6e9e1 312 Gene3D G3DSA:2.60.200.40 140 296 1.2E-17 T 13-10-2018 CDG55_05415 aa86ea34d5efd44c5d6844651ef6e9e1 312 SUPERFAMILY SSF111331 6 307 4.58E-53 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CDG55_05415 aa86ea34d5efd44c5d6844651ef6e9e1 312 Pfam PF00781 Diacylglycerol kinase catalytic domain 8 136 2.1E-22 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CDG55_05415 aa86ea34d5efd44c5d6844651ef6e9e1 312 SMART SM00046 7 139 9.6E-5 T 13-10-2018 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 CDG55_12365 6374e6c957c7140437d44976bde2e0ab 191 Gene3D G3DSA:3.40.50.2020 3 188 5.2E-53 T 13-10-2018 CDG55_12365 6374e6c957c7140437d44976bde2e0ab 191 SUPERFAMILY SSF53271 4 188 2.63E-45 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CDG55_12365 6374e6c957c7140437d44976bde2e0ab 191 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 42.209 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 CDG55_12365 6374e6c957c7140437d44976bde2e0ab 191 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 3 191 1.5E-85 T 13-10-2018 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22 CDG55_03805 d4666409742ac0fc032e7883c210c8a5 456 SMART SM00028 70 103 61.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_03805 d4666409742ac0fc032e7883c210c8a5 456 SMART SM00028 217 250 0.0018 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_03805 d4666409742ac0fc032e7883c210c8a5 456 Gene3D G3DSA:1.25.40.10 35 302 6.5E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_03805 d4666409742ac0fc032e7883c210c8a5 456 SUPERFAMILY SSF48452 70 250 2.47E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_13555 99d58089fe74b919397a6f6358bd3a9b 265 Gene3D G3DSA:3.10.129.90 6 264 2.4E-60 T 13-10-2018 CDG55_13555 99d58089fe74b919397a6f6358bd3a9b 265 SUPERFAMILY SSF54637 119 263 1.12E-19 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_13555 99d58089fe74b919397a6f6358bd3a9b 265 SUPERFAMILY SSF54637 15 108 3.32E-16 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_13555 99d58089fe74b919397a6f6358bd3a9b 265 Pfam PF13622 Thioesterase-like superfamily 19 263 1.6E-39 T 13-10-2018 CDG55_11620 c0c62f19e10308b6c1ad7ae2a913ab14 117 SUPERFAMILY SSF103481 14 113 4.71E-14 T 13-10-2018 CDG55_11620 c0c62f19e10308b6c1ad7ae2a913ab14 117 Gene3D G3DSA:1.10.3730.20 11 115 2.2E-17 T 13-10-2018 CDG55_11620 c0c62f19e10308b6c1ad7ae2a913ab14 117 Pfam PF00893 Small Multidrug Resistance protein 12 102 2.0E-12 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CDG55_07130 2bfd4de297b7e5ac3adfb840bda23a4e 508 SUPERFAMILY SSF53901 364 508 6.15E-29 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_07130 2bfd4de297b7e5ac3adfb840bda23a4e 508 SUPERFAMILY SSF53901 91 364 1.08E-57 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_07130 2bfd4de297b7e5ac3adfb840bda23a4e 508 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 93 507 1.3E-117 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_07130 2bfd4de297b7e5ac3adfb840bda23a4e 508 Gene3D G3DSA:3.40.47.10 81 508 2.8E-104 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_07130 2bfd4de297b7e5ac3adfb840bda23a4e 508 Pfam PF00108 Thiolase, N-terminal domain 91 358 2.6E-50 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CDG55_07130 2bfd4de297b7e5ac3adfb840bda23a4e 508 Pfam PF02803 Thiolase, C-terminal domain 370 508 1.4E-30 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CDG55_13095 07e03c2a3c38a5e9bf018ae9406ba27a 338 Pfam PF00762 Ferrochelatase 8 327 6.5E-101 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CDG55_13095 07e03c2a3c38a5e9bf018ae9406ba27a 338 Gene3D G3DSA:3.40.50.1400 171 309 1.8E-91 T 13-10-2018 CDG55_13095 07e03c2a3c38a5e9bf018ae9406ba27a 338 Hamap MF_00323 Ferrochelatase [hemH]. 7 328 35.149 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CDG55_13095 07e03c2a3c38a5e9bf018ae9406ba27a 338 TIGRFAM TIGR00109 hemH: ferrochelatase 6 328 1.7E-91 T 13-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 CDG55_13095 07e03c2a3c38a5e9bf018ae9406ba27a 338 SUPERFAMILY SSF53800 6 333 4.32E-93 T 13-10-2018 CDG55_13095 07e03c2a3c38a5e9bf018ae9406ba27a 338 Gene3D G3DSA:3.40.50.1400 8 329 1.8E-91 T 13-10-2018 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 21 479 42.179 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 Pfam PF08245 Mur ligase middle domain 126 306 3.1E-29 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 Gene3D G3DSA:3.40.50.720 22 109 1.7E-31 T 13-10-2018 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 SUPERFAMILY SSF51984 21 108 1.31E-28 T 13-10-2018 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 415 5.4E-20 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 23 472 4.5E-167 T 13-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 Gene3D G3DSA:3.40.1190.10 110 322 7.5E-81 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 Pfam PF01225 Mur ligase family, catalytic domain 23 121 5.0E-28 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 SUPERFAMILY SSF53623 107 324 8.11E-74 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 Gene3D G3DSA:3.90.190.20 323 480 1.1E-43 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_01785 0f0bc0b8123d8d63ce59becabadd1a69 481 SUPERFAMILY SSF53244 325 474 1.99E-43 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_03180 64ff0b4b2c317db90aa07c1e78be7548 131 Gene3D G3DSA:3.30.1370.30 2 73 7.0E-29 T 13-10-2018 CDG55_03180 64ff0b4b2c317db90aa07c1e78be7548 131 SUPERFAMILY SSF56047 2 130 1.57E-46 T 13-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03180 64ff0b4b2c317db90aa07c1e78be7548 131 Pfam PF00410 Ribosomal protein S8 5 130 5.5E-49 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03180 64ff0b4b2c317db90aa07c1e78be7548 131 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 131 30.558 T 13-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03180 64ff0b4b2c317db90aa07c1e78be7548 131 Gene3D G3DSA:3.30.1490.10 74 130 1.3E-21 T 13-10-2018 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 SUPERFAMILY SSF51998 337 874 2.81E-182 T 13-10-2018 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 PRINTS PR01183 Ribonucleotide reductase large chain signature 413 432 5.0E-47 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 PRINTS PR01183 Ribonucleotide reductase large chain signature 584 607 5.0E-47 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 PRINTS PR01183 Ribonucleotide reductase large chain signature 547 558 5.0E-47 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 PRINTS PR01183 Ribonucleotide reductase large chain signature 622 644 5.0E-47 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 PRINTS PR01183 Ribonucleotide reductase large chain signature 727 754 5.0E-47 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 PRINTS PR01183 Ribonucleotide reductase large chain signature 650 673 5.0E-47 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 Pfam PF03477 ATP cone domain 11 108 1.2E-17 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 261 332 1.2E-19 T 13-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 264 874 1.6E-213 T 13-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 Pfam PF02867 Ribonucleotide reductase, barrel domain 338 872 2.4E-185 T 13-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 Gene3D G3DSA:3.20.70.20 213 882 8.0E-248 T 13-10-2018 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 278 869 2.7E-120 T 13-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_04290 a75526f107919ee579b86ea182496e6c 944 SUPERFAMILY SSF48168 128 336 5.89E-57 T 13-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_05185 984e873fb1c7f33bafe7364cce3138d4 1198 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1086 1156 1.7E-10 T 13-10-2018 CDG55_05185 984e873fb1c7f33bafe7364cce3138d4 1198 Gene3D G3DSA:3.40.50.300 1 305 4.9E-41 T 13-10-2018 CDG55_05185 984e873fb1c7f33bafe7364cce3138d4 1198 SUPERFAMILY SSF52540 981 1175 8.5E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05185 984e873fb1c7f33bafe7364cce3138d4 1198 Pfam PF13476 AAA domain 5 250 2.6E-25 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain CDG55_05185 984e873fb1c7f33bafe7364cce3138d4 1198 SUPERFAMILY SSF52540 1 543 1.28E-11 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05185 984e873fb1c7f33bafe7364cce3138d4 1198 Gene3D G3DSA:3.40.50.300 934 1198 2.5E-24 T 13-10-2018 CDG55_14840 c9fff695fb1b16d35e2cd1f20a197d18 281 Gene3D G3DSA:3.20.20.70 123 269 4.8E-111 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_14840 c9fff695fb1b16d35e2cd1f20a197d18 281 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 24 112 4.4E-24 T 13-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 CDG55_14840 c9fff695fb1b16d35e2cd1f20a197d18 281 SUPERFAMILY SSF51690 114 279 1.22E-60 T 13-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 CDG55_14840 c9fff695fb1b16d35e2cd1f20a197d18 281 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 16 279 1.4E-96 T 13-10-2018 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 CDG55_14840 c9fff695fb1b16d35e2cd1f20a197d18 281 SUPERFAMILY SSF54675 6 112 3.3E-30 T 13-10-2018 CDG55_14840 c9fff695fb1b16d35e2cd1f20a197d18 281 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 114 278 6.2E-59 T 13-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 CDG55_14840 c9fff695fb1b16d35e2cd1f20a197d18 281 PIRSF PIRSF006250 6 281 3.1E-97 T 13-10-2018 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 CDG55_14840 c9fff695fb1b16d35e2cd1f20a197d18 281 Gene3D G3DSA:3.90.1170.20 10 278 4.8E-111 T 13-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 CDG55_10485 059d42f7b3b3aa928fc9b07ee0f43477 497 Pfam PF01235 Sodium:alanine symporter family 54 472 1.7E-139 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_10485 059d42f7b3b3aa928fc9b07ee0f43477 497 PRINTS PR00175 Sodium/alanine symporter signature 188 206 3.9E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_10485 059d42f7b3b3aa928fc9b07ee0f43477 497 PRINTS PR00175 Sodium/alanine symporter signature 303 321 3.9E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_10485 059d42f7b3b3aa928fc9b07ee0f43477 497 PRINTS PR00175 Sodium/alanine symporter signature 88 110 3.9E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_10485 059d42f7b3b3aa928fc9b07ee0f43477 497 PRINTS PR00175 Sodium/alanine symporter signature 365 387 3.9E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_10485 059d42f7b3b3aa928fc9b07ee0f43477 497 PRINTS PR00175 Sodium/alanine symporter signature 216 235 3.9E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_10485 059d42f7b3b3aa928fc9b07ee0f43477 497 PRINTS PR00175 Sodium/alanine symporter signature 428 448 3.9E-53 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_10485 059d42f7b3b3aa928fc9b07ee0f43477 497 TIGRFAM TIGR00835 agcS: amino acid carrier protein 15 461 1.4E-127 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_03635 25a144e8d233228028a590b4f2a1a87e 283 Pfam PF02811 PHP domain 5 93 4.5E-12 T 13-10-2018 IPR004013 PHP domain GO:0003824 CDG55_03635 25a144e8d233228028a590b4f2a1a87e 283 SMART SM00481 4 69 1.0E-20 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CDG55_03635 25a144e8d233228028a590b4f2a1a87e 283 Gene3D G3DSA:3.20.20.140 4 256 1.4E-68 T 13-10-2018 CDG55_03635 25a144e8d233228028a590b4f2a1a87e 283 Gene3D G3DSA:1.10.150.650 102 175 1.4E-68 T 13-10-2018 CDG55_03635 25a144e8d233228028a590b4f2a1a87e 283 SUPERFAMILY SSF89550 3 263 5.62E-43 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CDG55_07695 d57c12444680322a803e1341271a0632 388 SUPERFAMILY SSF55973 111 233 3.92E-50 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 Gene3D G3DSA:3.30.300.10 6 234 4.5E-174 T 13-10-2018 CDG55_07695 d57c12444680322a803e1341271a0632 388 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 232 1.3E-43 T 13-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 SUPERFAMILY SSF55973 234 387 1.29E-69 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 385 3.9E-187 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 102 3.7E-42 T 13-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 386 57.384 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 PIRSF PIRSF000497 1 387 2.8E-171 T 13-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 375 1.7E-67 T 13-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 Gene3D G3DSA:3.30.300.10 103 378 4.5E-174 T 13-10-2018 CDG55_07695 d57c12444680322a803e1341271a0632 388 SUPERFAMILY SSF55973 6 110 3.41E-46 T 13-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 CDG55_07695 d57c12444680322a803e1341271a0632 388 Gene3D G3DSA:3.30.300.10 12 271 4.5E-174 T 13-10-2018 CDG55_05795 4ab895b3677580b604ef1e79b45c2d8a 266 Gene3D G3DSA:3.20.20.20 9 71 7.0E-7 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_05795 4ab895b3677580b604ef1e79b45c2d8a 266 Gene3D G3DSA:3.30.70.20 88 183 1.1E-14 T 13-10-2018 CDG55_05795 4ab895b3677580b604ef1e79b45c2d8a 266 Pfam PF04060 Putative Fe-S cluster 18 50 3.8E-10 T 13-10-2018 IPR007202 4Fe-4S domain GO:0051536 CDG55_05795 4ab895b3677580b604ef1e79b45c2d8a 266 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 3 151 6.5E-54 T 13-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 CDG55_05795 4ab895b3677580b604ef1e79b45c2d8a 266 SUPERFAMILY SSF54862 15 143 2.62E-23 T 13-10-2018 CDG55_05795 4ab895b3677580b604ef1e79b45c2d8a 266 Pfam PF14697 4Fe-4S dicluster domain 88 141 1.9E-15 T 13-10-2018 CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 Gene3D G3DSA:3.90.45.10 1 168 1.3E-65 T 13-10-2018 IPR036821 Peptide deformylase superfamily CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 PIRSF PIRSF004749 1 175 3.1E-57 T 13-10-2018 IPR023635 Peptide deformylase CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 Hamap MF_00163 Peptide deformylase [def]. 2 163 31.096 T 13-10-2018 IPR023635 Peptide deformylase CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 Pfam PF01327 Polypeptide deformylase 5 153 4.7E-52 T 13-10-2018 IPR023635 Peptide deformylase CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 PRINTS PR01576 Peptide deformylase signature 33 62 1.6E-36 T 13-10-2018 IPR023635 Peptide deformylase CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 PRINTS PR01576 Peptide deformylase signature 102 120 1.6E-36 T 13-10-2018 IPR023635 Peptide deformylase CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 PRINTS PR01576 Peptide deformylase signature 121 150 1.6E-36 T 13-10-2018 IPR023635 Peptide deformylase CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 PRINTS PR01576 Peptide deformylase signature 90 101 1.6E-36 T 13-10-2018 IPR023635 Peptide deformylase CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 6 161 2.2E-57 T 13-10-2018 IPR023635 Peptide deformylase CDG55_14210 db6b6dfb525e49e86784d5b115471d89 176 SUPERFAMILY SSF56420 2 165 4.97E-62 T 13-10-2018 IPR036821 Peptide deformylase superfamily CDG55_09105 c436be6d0e67b9bef1f5c27e7236d160 140 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 137 7.5E-39 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CDG55_09105 c436be6d0e67b9bef1f5c27e7236d160 140 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 85 99 2.3E-14 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CDG55_09105 c436be6d0e67b9bef1f5c27e7236d160 140 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 68 81 2.3E-14 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CDG55_09105 c436be6d0e67b9bef1f5c27e7236d160 140 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 100 113 2.3E-14 T 13-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 CDG55_09105 c436be6d0e67b9bef1f5c27e7236d160 140 Pfam PF00364 Biotin-requiring enzyme 67 137 2.1E-20 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CDG55_09105 c436be6d0e67b9bef1f5c27e7236d160 140 Gene3D G3DSA:2.40.50.100 63 137 4.3E-27 T 13-10-2018 CDG55_09105 c436be6d0e67b9bef1f5c27e7236d160 140 SUPERFAMILY SSF51230 67 137 3.01E-21 T 13-10-2018 IPR011053 Single hybrid motif CDG55_14855 4422d8e429e1c72597c369ebccef52fd 341 SUPERFAMILY SSF63380 25 130 2.69E-19 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_14855 4422d8e429e1c72597c369ebccef52fd 341 SUPERFAMILY SSF54292 242 341 9.96E-13 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CDG55_14855 4422d8e429e1c72597c369ebccef52fd 341 Gene3D G3DSA:3.40.50.80 128 253 1.2E-21 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_14855 4422d8e429e1c72597c369ebccef52fd 341 Gene3D G3DSA:3.10.20.30 254 341 1.1E-9 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_14855 4422d8e429e1c72597c369ebccef52fd 341 SUPERFAMILY SSF52343 132 251 1.03E-19 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_14855 4422d8e429e1c72597c369ebccef52fd 341 Pfam PF00970 Oxidoreductase FAD-binding domain 36 127 9.2E-10 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CDG55_14855 4422d8e429e1c72597c369ebccef52fd 341 Pfam PF00175 Oxidoreductase NAD-binding domain 138 232 3.1E-9 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDG55_14855 4422d8e429e1c72597c369ebccef52fd 341 Gene3D G3DSA:2.40.30.10 30 127 5.9E-15 T 13-10-2018 CDG55_09680 2018e0311c83c33fcdb89247384ac826 351 Pfam PF06481 COX Aromatic Rich Motif 297 323 5.1E-9 T 13-10-2018 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 CDG55_09680 2018e0311c83c33fcdb89247384ac826 351 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 11 236 3.2E-99 T 13-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 CDG55_09680 2018e0311c83c33fcdb89247384ac826 351 Gene3D G3DSA:2.60.40.420 111 270 2.4E-47 T 13-10-2018 IPR008972 Cupredoxin CDG55_09680 2018e0311c83c33fcdb89247384ac826 351 PIRSF PIRSF000292 1 351 9.3E-128 T 13-10-2018 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 CDG55_09680 2018e0311c83c33fcdb89247384ac826 351 Gene3D G3DSA:1.10.287.90 26 110 4.6E-29 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09680 2018e0311c83c33fcdb89247384ac826 351 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 144 222 1.5E-5 T 13-10-2018 IPR002429 Cytochrome c oxidase subunit II-like C-terminal GO:0004129|GO:0005507|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09680 2018e0311c83c33fcdb89247384ac826 351 SUPERFAMILY SSF81464 25 115 2.62E-21 T 13-10-2018 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09680 2018e0311c83c33fcdb89247384ac826 351 SUPERFAMILY SSF49503 117 251 3.21E-44 T 13-10-2018 IPR008972 Cupredoxin CDG55_05965 a12bc9b1772a1c8d1c9a926b9d5bff7c 414 SUPERFAMILY SSF51395 1 346 9.77E-102 T 13-10-2018 CDG55_05965 a12bc9b1772a1c8d1c9a926b9d5bff7c 414 Gene3D G3DSA:3.20.20.70 1 355 7.3E-116 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_05965 a12bc9b1772a1c8d1c9a926b9d5bff7c 414 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 341 5.1E-57 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDG55_11125 d84a377e0eb599f54add8be00354d80a 339 SUPERFAMILY SSF46565 167 228 4.71E-5 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CDG55_11125 d84a377e0eb599f54add8be00354d80a 339 Gene3D G3DSA:1.10.287.110 187 238 2.4E-5 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 117 323 1.5E-75 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 Gene3D G3DSA:3.30.470.130 1 449 6.7E-195 T 13-10-2018 CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 Pfam PF02785 Biotin carboxylase C-terminal domain 337 443 2.9E-31 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 SMART SM00878 337 443 1.7E-46 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 SUPERFAMILY SSF56059 84 349 2.47E-66 T 13-10-2018 CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 Gene3D G3DSA:2.40.50.100 577 645 7.6E-19 T 13-10-2018 CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 Pfam PF00364 Biotin-requiring enzyme 579 643 4.5E-13 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 Pfam PF00289 Biotin carboxylase, N-terminal domain 3 111 3.2E-45 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 SUPERFAMILY SSF51246 332 447 3.19E-36 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 SUPERFAMILY SSF52440 2 114 4.17E-49 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_12180 b7c6af0481cad16e37b7b7831361e50d 648 SUPERFAMILY SSF51230 575 644 1.05E-16 T 13-10-2018 IPR011053 Single hybrid motif CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 152 256 1.8E-20 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 SUPERFAMILY SSF53738 261 366 7.46E-29 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 168 187 7.6E-29 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 7.6E-29 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 7.6E-29 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 7.6E-29 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 SUPERFAMILY SSF55957 370 455 3.84E-18 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 SUPERFAMILY SSF53738 3 175 1.18E-38 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 135 5.3E-33 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 371 1.8E-21 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 Gene3D G3DSA:3.40.120.10 170 252 3.2E-28 T 13-10-2018 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 Gene3D G3DSA:3.40.120.10 2 148 3.8E-51 T 13-10-2018 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 438 9.9E-11 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 SUPERFAMILY SSF53738 151 259 1.26E-25 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 Gene3D G3DSA:3.30.310.50 372 456 3.0E-25 T 13-10-2018 CDG55_14705 59813c6b2027dbd4c52daf1407936812 456 Gene3D G3DSA:3.40.120.10 253 371 2.2E-31 T 13-10-2018 CDG55_06975 150875d7dc571cc898a6851924e50bc4 329 SUPERFAMILY SSF51569 4 319 2.62E-100 T 13-10-2018 CDG55_06975 150875d7dc571cc898a6851924e50bc4 329 Gene3D G3DSA:3.20.20.70 1 325 2.4E-123 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_06975 150875d7dc571cc898a6851924e50bc4 329 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 15 313 2.7E-93 T 13-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CDG55_06975 150875d7dc571cc898a6851924e50bc4 329 TIGRFAM TIGR00874 talAB: transaldolase 5 318 2.6E-129 T 13-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 CDG55_03405 24f38edd64e7ef1883894d3eba70a069 197 Pfam PF07021 Methionine biosynthesis protein MetW 2 194 3.9E-74 T 13-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 CDG55_03405 24f38edd64e7ef1883894d3eba70a069 197 Gene3D G3DSA:3.40.50.150 2 172 2.6E-25 T 13-10-2018 CDG55_03405 24f38edd64e7ef1883894d3eba70a069 197 SUPERFAMILY SSF53335 10 170 2.22E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_03405 24f38edd64e7ef1883894d3eba70a069 197 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 2 195 5.7E-79 T 13-10-2018 IPR010743 Methionine biosynthesis MetW KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344 CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 PRINTS PR00410 Phenol hydroxylase reductase family signature 268 287 1.0E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 PRINTS PR00410 Phenol hydroxylase reductase family signature 184 196 1.0E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 PRINTS PR00410 Phenol hydroxylase reductase family signature 363 371 1.0E-9 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 SUPERFAMILY SSF52343 259 398 1.83E-35 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 SUPERFAMILY SSF46458 1 142 5.05E-34 T 13-10-2018 IPR009050 Globin-like superfamily CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 Gene3D G3DSA:2.40.30.10 152 259 1.2E-33 T 13-10-2018 CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 Pfam PF00042 Globin 5 101 1.5E-6 T 13-10-2018 IPR000971 Globin GO:0020037 CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 SUPERFAMILY SSF63380 150 260 2.79E-26 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 Pfam PF00175 Oxidoreductase NAD-binding domain 269 375 1.0E-14 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 Gene3D G3DSA:1.10.490.10 1 143 2.7E-47 T 13-10-2018 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 Gene3D G3DSA:3.40.50.80 261 398 1.5E-32 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_03085 b61f4bd4e4c8aa36e874727e8e98f6ac 403 Pfam PF00970 Oxidoreductase FAD-binding domain 157 259 2.7E-7 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 450 555 8.8E-24 T 13-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 SUPERFAMILY SSF63737 12 199 2.88E-40 T 13-10-2018 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 Gene3D G3DSA:2.60.40.1840 450 556 9.8E-26 T 13-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 560 866 2.1E-72 T 13-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 19 865 2.4E-303 T 13-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 SUPERFAMILY SSF55486 211 455 1.68E-70 T 13-10-2018 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 319 331 6.1E-9 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 264 274 6.1E-9 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 300 315 6.1E-9 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 182 197 6.1E-9 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 Gene3D G3DSA:1.10.390.10 287 449 2.5E-57 T 13-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 Gene3D G3DSA:1.25.50.10 557 867 6.0E-71 T 13-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 Gene3D G3DSA:2.60.40.1730 22 200 4.1E-67 T 13-10-2018 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 Gene3D G3DSA:1.10.1740.60 201 285 5.4E-38 T 13-10-2018 CDG55_06925 0ee6ee09713c49a5daf2fe1cc585b645 869 Pfam PF01433 Peptidase family M1 domain 214 444 3.3E-53 T 13-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 SMART SM00382 110 331 1.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 5 408 1.5E-204 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 Pfam PF07724 AAA domain (Cdc48 subfamily) 111 309 2.6E-51 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 SUPERFAMILY SSF52540 59 400 3.63E-75 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 SUPERFAMILY SSF57716 9 44 1.71E-10 T 13-10-2018 CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 315 390 4.9E-15 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 Gene3D G3DSA:1.10.8.60 314 419 9.8E-39 T 13-10-2018 CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 Gene3D G3DSA:3.40.50.300 53 313 1.4E-111 T 13-10-2018 CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 SMART SM01086 315 409 3.3E-35 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 413 52.42 T 13-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 SMART SM00994 8 47 1.4E-19 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 Gene3D G3DSA:3.30.50.30 2 47 9.4E-17 T 13-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily CDG55_03440 2aff617b9ac85ebb4315b959a029bc75 436 Pfam PF06689 ClpX C4-type zinc finger 9 45 1.8E-17 T 13-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 CDG55_13745 2ae913b3900e8ed0bc237e4598d6169f 278 SMART SM00228 200 269 7.4E-4 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_13745 2ae913b3900e8ed0bc237e4598d6169f 278 Gene3D G3DSA:2.30.30.830 78 148 4.7E-7 T 13-10-2018 CDG55_13745 2ae913b3900e8ed0bc237e4598d6169f 278 SUPERFAMILY SSF50156 185 275 9.33E-12 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CDG55_13745 2ae913b3900e8ed0bc237e4598d6169f 278 Gene3D G3DSA:2.30.42.10 177 276 3.0E-11 T 13-10-2018 CDG55_13745 2ae913b3900e8ed0bc237e4598d6169f 278 Pfam PF11356 Type II secretion system protein C 26 139 3.0E-15 T 13-10-2018 IPR024961 Type II secretion system protein C, N-terminal CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 SUPERFAMILY SSF51905 202 514 1.85E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 Gene3D G3DSA:3.50.50.60 212 509 8.0E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 Gene3D G3DSA:3.50.50.60 327 450 8.0E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 SUPERFAMILY SSF52833 1 100 1.07E-27 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 491 1.8E-38 T 13-10-2018 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 1.8E-38 T 13-10-2018 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.8E-38 T 13-10-2018 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 1.8E-38 T 13-10-2018 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 1.8E-38 T 13-10-2018 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 479 497 4.6E-62 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 Gene3D G3DSA:3.40.30.80 1 199 3.3E-62 T 13-10-2018 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 504 5.7E-45 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 518 1.5E-230 T 13-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 PIRSF PIRSF000238 1 521 8.3E-252 T 13-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 SUPERFAMILY SSF52833 103 195 5.65E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_07290 91d6d961de07c9e208e79222f11d69e2 521 Pfam PF13192 Thioredoxin domain 119 194 1.7E-7 T 13-10-2018 IPR012336 Thioredoxin-like fold CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 PIRSF PIRSF000114 16 348 2.4E-103 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 SUPERFAMILY SSF51735 22 192 5.73E-49 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 25 42 2.7E-37 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 75 102 2.7E-37 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 254 271 2.7E-37 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 214 238 2.7E-37 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 149 169 2.7E-37 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 189 213 2.7E-37 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 196 334 6.4E-46 T 13-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 21 338 33.296 T 13-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 Gene3D G3DSA:1.10.1040.10 205 351 2.6E-45 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 SUPERFAMILY SSF48179 195 347 1.43E-50 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 23 173 1.2E-47 T 13-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 CDG55_07200 55fe11af97a0a3f26db6d94d4d31196c 357 Gene3D G3DSA:3.40.50.720 10 203 1.2E-59 T 13-10-2018 CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 TIGRFAM TIGR00552 nadE: NAD+ synthetase 265 513 2.9E-60 T 13-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 Gene3D G3DSA:3.60.110.10 1 260 1.5E-105 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 Pfam PF02540 NAD synthase 264 513 1.4E-73 T 13-10-2018 IPR022310 NAD/GMP synthase CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 PIRSF PIRSF006630 1 541 1.6E-204 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 Pfam PF00795 Carbon-nitrogen hydrolase 5 244 2.3E-28 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 Hamap MF_02090 Glutamine-dependent NAD(+) synthetase [nadE]. 4 539 28.255 T 13-10-2018 IPR014445 Glutamine-dependent NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.5.1|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 Gene3D G3DSA:3.40.50.620 261 540 1.3E-111 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 SUPERFAMILY SSF56317 1 245 7.85E-61 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CDG55_04990 338ecd24491c72b96c2b1fd5f59c1876 541 SUPERFAMILY SSF52402 256 523 4.19E-77 T 13-10-2018 CDG55_06880 1e03c5147b96524870f5115c84a0db99 570 SUPERFAMILY SSF52540 3 178 1.69E-27 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06880 1e03c5147b96524870f5115c84a0db99 570 Gene3D G3DSA:3.40.50.300 1 175 6.5E-33 T 13-10-2018 CDG55_06880 1e03c5147b96524870f5115c84a0db99 570 Pfam PF14493 Helix-turn-helix domain 466 566 3.6E-17 T 13-10-2018 IPR029491 Helicase Helix-turn-helix domain Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 CDG55_06880 1e03c5147b96524870f5115c84a0db99 570 SUPERFAMILY SSF52540 125 405 1.7E-38 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06880 1e03c5147b96524870f5115c84a0db99 570 Pfam PF05970 PIF1-like helicase 11 183 2.2E-37 T 13-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 CDG55_06880 1e03c5147b96524870f5115c84a0db99 570 Pfam PF05970 PIF1-like helicase 203 297 2.3E-7 T 13-10-2018 IPR010285 DNA helicase Pif1-like GO:0000723|GO:0003678|GO:0006281 CDG55_06880 1e03c5147b96524870f5115c84a0db99 570 SMART SM00382 12 168 9.2E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_06880 1e03c5147b96524870f5115c84a0db99 570 Gene3D G3DSA:3.40.50.300 185 398 5.7E-6 T 13-10-2018 CDG55_06930 0bc7c33f3b940d47f9ff5a738d1b2240 712 SUPERFAMILY SSF55874 580 711 4.3E-11 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_06930 0bc7c33f3b940d47f9ff5a738d1b2240 712 Pfam PF07730 Histidine kinase 528 575 1.9E-4 T 13-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 CDG55_06930 0bc7c33f3b940d47f9ff5a738d1b2240 712 Gene3D G3DSA:3.30.565.10 584 711 4.0E-22 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 Gene3D G3DSA:3.30.9.90 83 470 6.0E-190 T 13-10-2018 CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 Gene3D G3DSA:3.30.70.20 471 565 4.0E-37 T 13-10-2018 CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 SUPERFAMILY SSF51905 6 437 1.27E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 466 567 2.0E-50 T 13-10-2018 CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 12 34 1.4E-6 T 13-10-2018 CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 183 198 1.4E-6 T 13-10-2018 CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 Pfam PF01946 Thi4 family 7 59 1.7E-6 T 13-10-2018 CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 SUPERFAMILY SSF54373 215 311 5.89E-33 T 13-10-2018 CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 Gene3D G3DSA:3.50.50.60 10 407 6.0E-190 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_13115 78f8341daf7543a1ac99b1ae848624d4 570 SUPERFAMILY SSF54862 470 570 1.9E-29 T 13-10-2018 CDG55_02870 66b5efadca4225a9d40c73e85033bd98 259 Pfam PF08241 Methyltransferase domain 49 136 2.6E-13 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CDG55_02870 66b5efadca4225a9d40c73e85033bd98 259 SUPERFAMILY SSF53335 17 180 9.28E-24 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_02870 66b5efadca4225a9d40c73e85033bd98 259 Gene3D G3DSA:3.40.50.150 13 244 1.1E-31 T 13-10-2018 CDG55_10575 5911512bed9bc71dd0c925366daef1e0 256 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 36 251 3.5E-62 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 CDG55_10575 5911512bed9bc71dd0c925366daef1e0 256 Pfam PF13531 Bacterial extracellular solute-binding protein 31 252 7.2E-46 T 13-10-2018 CDG55_10575 5911512bed9bc71dd0c925366daef1e0 256 Gene3D G3DSA:3.40.190.10 109 218 1.8E-77 T 13-10-2018 CDG55_10575 5911512bed9bc71dd0c925366daef1e0 256 SUPERFAMILY SSF53850 29 252 8.51E-66 T 13-10-2018 CDG55_10575 5911512bed9bc71dd0c925366daef1e0 256 PIRSF PIRSF004846 1 256 2.4E-73 T 13-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 CDG55_10575 5911512bed9bc71dd0c925366daef1e0 256 Gene3D G3DSA:3.40.190.10 32 252 1.8E-77 T 13-10-2018 CDG55_08835 6d8cf84c6a70c70896c49245c2b5c3ca 605 Pfam PF04183 IucA / IucC family 143 387 9.9E-64 T 13-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 CDG55_08835 6d8cf84c6a70c70896c49245c2b5c3ca 605 Pfam PF06276 Ferric iron reductase FhuF-like transporter 409 566 2.7E-32 T 13-10-2018 IPR022770 Ferric iron reductase FhuF domain CDG55_08835 6d8cf84c6a70c70896c49245c2b5c3ca 605 Gene3D G3DSA:1.10.274.90 3 127 2.2E-16 T 13-10-2018 CDG55_08835 6d8cf84c6a70c70896c49245c2b5c3ca 605 Gene3D G3DSA:1.10.510.40 376 578 4.4E-50 T 13-10-2018 CDG55_03160 0e76470ec86ed194bb361931fb802e83 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 9.5E-54 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CDG55_03160 0e76470ec86ed194bb361931fb802e83 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.882 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CDG55_03160 0e76470ec86ed194bb361931fb802e83 122 SUPERFAMILY SSF50193 1 122 9.42E-51 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_03160 0e76470ec86ed194bb361931fb802e83 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 4.9E-57 T 13-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 CDG55_03160 0e76470ec86ed194bb361931fb802e83 122 SMART SM01374 1 122 1.5E-84 T 13-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 CDG55_03160 0e76470ec86ed194bb361931fb802e83 122 Gene3D G3DSA:2.40.150.20 1 122 8.2E-54 T 13-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 Pfam PF10410 DnaB-helicase binding domain of primase 418 472 2.8E-4 T 13-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 Pfam PF08275 DNA primase catalytic core, N-terminal domain 181 301 5.0E-37 T 13-10-2018 IPR013264 DNA primase, catalytic core, N-terminal CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 Gene3D G3DSA:3.40.1360.10 292 415 9.0E-37 T 13-10-2018 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 SUPERFAMILY SSF56731 171 462 1.07E-91 T 13-10-2018 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 Gene3D G3DSA:3.90.980.10 170 291 5.1E-37 T 13-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 SUPERFAMILY SSF57783 1 97 3.91E-33 T 13-10-2018 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 SMART SM00400 34 88 1.8E-29 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 Pfam PF13662 Toprim domain 313 376 6.5E-16 T 13-10-2018 IPR006171 TOPRIM domain CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 Gene3D G3DSA:3.90.580.10 1 101 2.9E-36 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 Pfam PF01807 CHC2 zinc finger 4 98 1.9E-38 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 Hamap MF_00974 DNA primase [dnaG]. 2 620 26.175 T 13-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 CDG55_04830 59a0d197b92cd84b2884e7bfdc83a371 628 SMART SM00493 309 379 4.5E-14 T 13-10-2018 IPR006171 TOPRIM domain CDG55_04965 366e64227c24f475e60503c73f6a22c3 87 Gene3D G3DSA:3.30.70.20 2 83 5.0E-33 T 13-10-2018 CDG55_04965 366e64227c24f475e60503c73f6a22c3 87 SUPERFAMILY SSF54862 4 76 5.8E-19 T 13-10-2018 CDG55_04965 366e64227c24f475e60503c73f6a22c3 87 Pfam PF00037 4Fe-4S binding domain 5 25 1.8E-6 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 13 879 0.0 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Pfam PF05192 MutS domain III 286 577 1.6E-35 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Gene3D G3DSA:3.40.1170.10 5 131 3.1E-48 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Pfam PF01624 MutS domain I 14 129 9.5E-41 T 13-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 SUPERFAMILY SSF53150 124 282 1.01E-37 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Gene3D G3DSA:3.30.420.110 139 278 4.1E-37 T 13-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Gene3D G3DSA:3.40.50.300 586 887 3.2E-98 T 13-10-2018 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 SMART SM00534 625 811 4.2E-109 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 SMART SM00533 298 609 4.8E-94 T 13-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 SUPERFAMILY SSF48334 283 584 1.18E-81 T 13-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 SUPERFAMILY SSF52540 585 815 4.59E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Gene3D G3DSA:1.10.1420.10 282 577 1.1E-95 T 13-10-2018 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Gene3D G3DSA:1.10.1420.10 405 521 1.1E-95 T 13-10-2018 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 PIRSF PIRSF037677 7 877 1.2E-150 T 13-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Pfam PF05190 MutS family domain IV 446 536 3.3E-30 T 13-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 13 874 24.143 T 13-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Pfam PF05188 MutS domain II 146 269 7.0E-22 T 13-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 Pfam PF00488 MutS domain V 629 814 5.7E-80 T 13-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 CDG55_06335 c32147f174165fdfdbc8bb29e9ffd151 890 SUPERFAMILY SSF55271 8 125 1.83E-39 T 13-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 CDG55_11935 e5c050d0e01b336cbdd6326de16f58ba 308 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 11 307 2.4E-128 T 13-10-2018 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767 CDG55_11935 e5c050d0e01b336cbdd6326de16f58ba 308 Pfam PF01063 Amino-transferase class IV 36 268 5.5E-54 T 13-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 CDG55_11935 e5c050d0e01b336cbdd6326de16f58ba 308 Gene3D G3DSA:3.20.10.10 133 296 5.8E-52 T 13-10-2018 CDG55_11935 e5c050d0e01b336cbdd6326de16f58ba 308 Gene3D G3DSA:3.30.470.10 7 132 2.1E-38 T 13-10-2018 CDG55_11935 e5c050d0e01b336cbdd6326de16f58ba 308 SUPERFAMILY SSF56752 2 304 9.55E-102 T 13-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 CDG55_03745 d49fdef92a0b611b5f326b226835ab17 132 SUPERFAMILY SSF81301 25 129 3.6E-36 T 13-10-2018 CDG55_03745 d49fdef92a0b611b5f326b226835ab17 132 Gene3D G3DSA:3.30.460.10 18 128 2.2E-36 T 13-10-2018 CDG55_03745 d49fdef92a0b611b5f326b226835ab17 132 Pfam PF02410 Ribosomal silencing factor during starvation 31 125 5.2E-26 T 13-10-2018 CDG55_03745 d49fdef92a0b611b5f326b226835ab17 132 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 29 125 8.2E-36 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CDG55_03745 d49fdef92a0b611b5f326b226835ab17 132 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 20 126 24.675 T 13-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CDG55_10460 1e4c0afa3f1536f4bd28fdb8ec24f315 200 Gene3D G3DSA:3.40.50.1820 2 199 1.3E-29 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_10460 1e4c0afa3f1536f4bd28fdb8ec24f315 200 SUPERFAMILY SSF53474 3 197 7.59E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_10460 1e4c0afa3f1536f4bd28fdb8ec24f315 200 Pfam PF12697 Alpha/beta hydrolase family 4 125 5.7E-10 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 Pfam PF00122 E1-E2 ATPase 112 277 1.4E-32 T 13-10-2018 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 361 592 2.7E-44 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 67 334 1.8E-31 T 13-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 SUPERFAMILY SSF56784 286 550 2.01E-39 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 Gene3D G3DSA:2.70.150.20 84 204 1.3E-23 T 13-10-2018 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 SUPERFAMILY SSF81665 28 650 3.79E-10 T 13-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 SUPERFAMILY SSF81653 107 200 1.09E-18 T 13-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 11 666 6.2E-280 T 13-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 Gene3D G3DSA:3.40.1110.10 313 439 8.0E-39 T 13-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 8 670 38.137 T 13-10-2018 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 298 312 5.7E-23 T 13-10-2018 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 529 541 5.7E-23 T 13-10-2018 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 453 463 5.7E-23 T 13-10-2018 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 506 525 5.7E-23 T 13-10-2018 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 147 161 5.7E-23 T 13-10-2018 CDG55_11265 015798d8dc71d5db2a9d1325e9ac58c4 670 Pfam PF00702 haloacid dehalogenase-like hydrolase 294 520 4.4E-34 T 13-10-2018 CDG55_08400 ed20ca29f8f35a1e88e45ccb7991e16a 223 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 7 220 32.988 T 13-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CDG55_08400 ed20ca29f8f35a1e88e45ccb7991e16a 223 SUPERFAMILY SSF100950 7 149 1.42E-43 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CDG55_08400 ed20ca29f8f35a1e88e45ccb7991e16a 223 SUPERFAMILY SSF75445 131 201 8.5E-23 T 13-10-2018 CDG55_08400 ed20ca29f8f35a1e88e45ccb7991e16a 223 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 51 216 1.5E-58 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CDG55_08400 ed20ca29f8f35a1e88e45ccb7991e16a 223 Gene3D G3DSA:3.40.50.1360 11 212 4.9E-72 T 13-10-2018 CDG55_08400 ed20ca29f8f35a1e88e45ccb7991e16a 223 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 10 217 4.5E-64 T 13-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 CDG55_08400 ed20ca29f8f35a1e88e45ccb7991e16a 223 Gene3D G3DSA:3.30.70.260 127 198 4.9E-72 T 13-10-2018 CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 273 622 1.3E-76 T 13-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 SUPERFAMILY SSF54373 467 550 1.96E-5 T 13-10-2018 CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 Gene3D G3DSA:3.30.9.10 351 558 7.4E-79 T 13-10-2018 CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 Gene3D G3DSA:3.50.50.60 274 619 7.4E-79 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 Pfam PF01266 FAD dependent oxidoreductase 273 598 4.1E-28 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 SUPERFAMILY SSF51971 269 604 1.88E-22 T 13-10-2018 CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 120 241 1.8E-36 T 13-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 Gene3D G3DSA:3.40.50.150 12 254 2.9E-87 T 13-10-2018 CDG55_03615 6a346aad98c33db39d4b7e7abf9b1136 632 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 8 622 21.759 T 13-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 305 321 5.9E-19 T 13-10-2018 CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 5.9E-19 T 13-10-2018 CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 164 179 5.9E-19 T 13-10-2018 CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 305 5.9E-19 T 13-10-2018 CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 Gene3D G3DSA:3.50.50.60 5 348 2.4E-95 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 Pfam PF01494 FAD binding domain 4 358 1.7E-36 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 400 2.3E-110 T 13-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 SUPERFAMILY SSF51905 4 393 1.14E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05875 64872dc3cff3b54168855a37c9349ec4 403 Gene3D G3DSA:3.30.9.50 84 279 2.4E-95 T 13-10-2018 CDG55_11060 071b2f53c98e8c897bf1ae1e16bf37d2 216 Gene3D G3DSA:1.20.144.10 108 210 1.3E-21 T 13-10-2018 CDG55_11060 071b2f53c98e8c897bf1ae1e16bf37d2 216 SUPERFAMILY SSF48317 5 195 1.96E-34 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CDG55_11060 071b2f53c98e8c897bf1ae1e16bf37d2 216 Pfam PF01569 PAP2 superfamily 84 195 3.2E-20 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDG55_11060 071b2f53c98e8c897bf1ae1e16bf37d2 216 SMART SM00014 80 189 2.6E-16 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDG55_08570 b2ca17019641f6d1516a17f26d4abc4c 710 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 170 5.4E-9 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_08570 b2ca17019641f6d1516a17f26d4abc4c 710 Gene3D G3DSA:2.170.130.10 56 180 1.1E-21 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_08570 b2ca17019641f6d1516a17f26d4abc4c 710 Gene3D G3DSA:2.40.170.20 181 710 1.9E-79 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_08570 b2ca17019641f6d1516a17f26d4abc4c 710 SUPERFAMILY SSF56935 35 710 1.98E-98 T 13-10-2018 CDG55_08570 b2ca17019641f6d1516a17f26d4abc4c 710 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 73 710 1.0E-113 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CDG55_08570 b2ca17019641f6d1516a17f26d4abc4c 710 Pfam PF00593 TonB dependent receptor 254 708 2.1E-35 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_11845 b38858d7bc29591e7e432327eba1839d 165 Pfam PF06146 Phosphate-starvation-inducible E 58 126 1.3E-16 T 13-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like CDG55_11845 b38858d7bc29591e7e432327eba1839d 165 PIRSF PIRSF029598 1 143 4.8E-33 T 13-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 CDG55_05325 1af5117d8019aa125c3c16ecf5bbc2d2 309 Pfam PF13737 Transposase DDE domain 23 131 4.2E-39 T 13-10-2018 IPR025668 Transposase DDE domain CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 362 2.3E-31 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Gene3D G3DSA:3.40.120.10 175 359 2.4E-65 T 13-10-2018 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 SUPERFAMILY SSF53738 2 181 1.88E-46 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Gene3D G3DSA:3.30.310.50 367 444 6.9E-24 T 13-10-2018 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 8.7E-19 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.7E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.7E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.7E-13 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 135 2.2E-40 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 4 439 7.8E-185 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 441 46.036 T 13-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 SUPERFAMILY SSF55957 355 442 1.44E-23 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 SUPERFAMILY SSF53738 258 363 5.49E-27 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Gene3D G3DSA:3.40.120.10 1 154 1.1E-45 T 13-10-2018 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Gene3D G3DSA:3.40.120.10 257 336 2.4E-65 T 13-10-2018 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 SUPERFAMILY SSF53738 156 256 1.53E-32 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_01865 b534b752626cad7de8070dd77a7c9345 445 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 370 438 1.5E-13 T 13-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 3.5E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 3.5E-5 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 SMART SM00345 19 77 5.8E-10 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 76 8.3E-16 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 SUPERFAMILY SSF48008 85 219 1.57E-22 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 Gene3D G3DSA:1.10.10.10 4 77 7.6E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 SMART SM00895 87 212 2.9E-10 T 13-10-2018 IPR011711 GntR, C-terminal CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 Gene3D G3DSA:1.20.120.530 85 223 9.9E-22 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 SUPERFAMILY SSF46785 10 88 3.8E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_08555 f18a62a050a27cca38c069b52f22a058 231 Pfam PF07729 FCD domain 87 211 1.6E-14 T 13-10-2018 IPR011711 GntR, C-terminal CDG55_02700 5bb27f6b88f667e30f9327962c70851e 341 Pfam PF07963 Prokaryotic N-terminal methylation motif 5 28 2.6E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02700 5bb27f6b88f667e30f9327962c70851e 341 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 29 1.9E-5 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02700 5bb27f6b88f667e30f9327962c70851e 341 Pfam PF16074 Type IV Pilus-assembly protein W 178 333 2.4E-12 T 13-10-2018 IPR032092 Type IV Pilus-assembly protein W GO:0043683 CDG55_03380 805eccf96e1b0dc0ff915407a08dd9fb 146 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 125 14.744 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 CDG55_03380 805eccf96e1b0dc0ff915407a08dd9fb 146 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 9.3E-17 T 13-10-2018 CDG55_03380 805eccf96e1b0dc0ff915407a08dd9fb 146 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 9.3E-17 T 13-10-2018 CDG55_03380 805eccf96e1b0dc0ff915407a08dd9fb 146 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 9.3E-17 T 13-10-2018 CDG55_03380 805eccf96e1b0dc0ff915407a08dd9fb 146 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 3 79 4.0E-21 T 13-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 CDG55_03380 805eccf96e1b0dc0ff915407a08dd9fb 146 Pfam PF02416 mttA/Hcf106 family 4 33 6.9E-6 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 CDG55_05495 55cab524d17f69176f1b6ccf21a49787 204 Pfam PF00484 Carbonic anhydrase 45 199 6.5E-37 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDG55_05495 55cab524d17f69176f1b6ccf21a49787 204 SMART SM00947 38 203 5.0E-49 T 13-10-2018 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 CDG55_05495 55cab524d17f69176f1b6ccf21a49787 204 SUPERFAMILY SSF53056 2 203 8.5E-51 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 CDG55_05495 55cab524d17f69176f1b6ccf21a49787 204 Gene3D G3DSA:3.40.1050.10 1 204 1.3E-60 T 13-10-2018 IPR036874 Carbonic anhydrase superfamily GO:0004089|GO:0008270 CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 Pfam PF07660 Secretin and TonB N terminus short domain 307 349 2.8E-9 T 13-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 Pfam PF00263 Bacterial type II and III secretion system protein 563 721 6.7E-50 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 Gene3D G3DSA:2.60.40.3500 32 139 8.2E-7 T 13-10-2018 CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 Gene3D G3DSA:3.30.1370.120 349 463 1.1E-24 T 13-10-2018 IPR038591 NolW-like superfamily CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 277 722 1.6E-161 T 13-10-2018 IPR013355 Type IV pilus secretin PilQ CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 Pfam PF03958 Bacterial type II/III secretion system short domain 376 462 1.1E-14 T 13-10-2018 IPR005644 NolW-like CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 PRINTS PR00811 Bacterial general secretion pathway protein D signature 559 583 2.7E-21 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 PRINTS PR00811 Bacterial general secretion pathway protein D signature 462 472 2.7E-21 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 PRINTS PR00811 Bacterial general secretion pathway protein D signature 594 604 2.7E-21 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 PRINTS PR00811 Bacterial general secretion pathway protein D signature 686 704 2.7E-21 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 PRINTS PR00811 Bacterial general secretion pathway protein D signature 709 723 2.7E-21 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 SMART SM00965 302 350 4.3E-10 T 13-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 Pfam PF11741 AMIN domain 52 134 5.5E-7 T 13-10-2018 IPR021731 AMIN domain CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 Gene3D G3DSA:3.30.1370.130 284 342 9.9E-9 T 13-10-2018 CDG55_02480 fa4f2b1cdd9726578740594b9e97bb1d 729 Gene3D G3DSA:2.60.40.3470 140 264 4.4E-27 T 13-10-2018 CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 13 488 9.0E-164 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 SUPERFAMILY SSF55931 14 305 1.05E-114 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 SMART SM00845 337 488 1.6E-76 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 12 489 37.405 T 13-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 Pfam PF02934 GatB/GatE catalytic domain 15 298 4.3E-108 T 13-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 Pfam PF02637 GatB domain 337 488 2.5E-50 T 13-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 SUPERFAMILY SSF89095 306 413 4.19E-32 T 13-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 Gene3D G3DSA:1.10.10.410 429 489 5.2E-25 T 13-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal CDG55_11335 ff6acd229f0d1fdaaf4b861f4597fb9b 489 Gene3D G3DSA:1.10.150.380 306 427 7.9E-33 T 13-10-2018 CDG55_09610 97f1a63b792b2efcf85768e7f8ed3df3 168 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 2.0E-29 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CDG55_09610 97f1a63b792b2efcf85768e7f8ed3df3 168 Pfam PF17209 Hfq protein 7 68 8.9E-31 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CDG55_09610 97f1a63b792b2efcf85768e7f8ed3df3 168 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.6 T 13-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 CDG55_09610 97f1a63b792b2efcf85768e7f8ed3df3 168 SUPERFAMILY SSF50182 7 67 3.07E-23 T 13-10-2018 IPR010920 LSM domain superfamily CDG55_09610 97f1a63b792b2efcf85768e7f8ed3df3 168 Gene3D G3DSA:2.30.30.100 1 69 1.3E-31 T 13-10-2018 CDG55_07310 0b4382ff9dc8d86de1862eb463afaada 279 Gene3D G3DSA:3.40.1280.10 12 178 1.8E-63 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDG55_07310 0b4382ff9dc8d86de1862eb463afaada 279 SUPERFAMILY SSF75217 14 190 1.99E-38 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CDG55_07310 0b4382ff9dc8d86de1862eb463afaada 279 Pfam PF00588 SpoU rRNA Methylase family 16 166 1.6E-34 T 13-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 CDG55_07310 0b4382ff9dc8d86de1862eb463afaada 279 Gene3D G3DSA:1.10.8.590 191 279 2.3E-22 T 13-10-2018 CDG55_07310 0b4382ff9dc8d86de1862eb463afaada 279 PIRSF PIRSF004808 11 269 2.0E-67 T 13-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 CDG55_07310 0b4382ff9dc8d86de1862eb463afaada 279 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 14 264 5.1E-68 T 13-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 CDG55_05825 366fc18b43d9c7ccecaa201d9568b1b2 195 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 8 187 1.4E-31 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CDG55_05825 366fc18b43d9c7ccecaa201d9568b1b2 195 PIRSF PIRSF006806 3 190 3.0E-33 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CDG55_05825 366fc18b43d9c7ccecaa201d9568b1b2 195 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 8 187 3.4E-38 T 13-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase CDG55_05825 366fc18b43d9c7ccecaa201d9568b1b2 195 SUPERFAMILY SSF100950 7 194 9.77E-42 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CDG55_05825 366fc18b43d9c7ccecaa201d9568b1b2 195 Gene3D G3DSA:3.40.50.10420 1 194 1.7E-44 T 13-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CDG55_03195 d0deae78d3d80fd1bacd07f0a42d7132 165 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 162 33.942 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDG55_03195 d0deae78d3d80fd1bacd07f0a42d7132 165 Gene3D G3DSA:3.30.230.10 73 165 4.6E-36 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_03195 d0deae78d3d80fd1bacd07f0a42d7132 165 SUPERFAMILY SSF54211 79 157 2.53E-26 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_03195 d0deae78d3d80fd1bacd07f0a42d7132 165 Pfam PF03719 Ribosomal protein S5, C-terminal domain 86 156 1.9E-29 T 13-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 CDG55_03195 d0deae78d3d80fd1bacd07f0a42d7132 165 Gene3D G3DSA:3.30.160.20 1 72 4.6E-29 T 13-10-2018 CDG55_03195 d0deae78d3d80fd1bacd07f0a42d7132 165 Pfam PF00333 Ribosomal protein S5, N-terminal domain 10 73 2.6E-27 T 13-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDG55_03195 d0deae78d3d80fd1bacd07f0a42d7132 165 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 161 9.0E-65 T 13-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDG55_03195 d0deae78d3d80fd1bacd07f0a42d7132 165 SUPERFAMILY SSF54768 7 75 9.42E-23 T 13-10-2018 CDG55_06980 6f4ec65c2817a45add45e1c981b4d166 299 Gene3D G3DSA:3.40.190.290 95 295 6.9E-25 T 13-10-2018 CDG55_06980 6f4ec65c2817a45add45e1c981b4d166 299 Gene3D G3DSA:1.10.10.10 1 87 5.2E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_06980 6f4ec65c2817a45add45e1c981b4d166 299 SUPERFAMILY SSF53850 90 295 2.9E-23 T 13-10-2018 CDG55_06980 6f4ec65c2817a45add45e1c981b4d166 299 SUPERFAMILY SSF46785 2 83 8.16E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_06980 6f4ec65c2817a45add45e1c981b4d166 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.7E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_06980 6f4ec65c2817a45add45e1c981b4d166 299 Pfam PF03466 LysR substrate binding domain 89 291 6.7E-19 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 Gene3D G3DSA:3.40.50.880 155 378 1.6E-71 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 3.7E-39 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 193 207 3.7E-39 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 232 246 3.7E-39 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 3.7E-39 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 3.7E-39 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00097 Anthranilate synthase component II signature 235 244 1.5E-5 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00097 Anthranilate synthase component II signature 349 362 1.5E-5 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00097 Anthranilate synthase component II signature 264 275 1.5E-5 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 Gene3D G3DSA:3.50.30.20 3 154 4.0E-59 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 SUPERFAMILY SSF52021 4 143 5.36E-56 T 13-10-2018 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 4.8E-11 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 235 244 4.8E-11 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 4.8E-11 T 13-10-2018 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 Pfam PF00117 Glutamine amidotransferase class-I 196 372 7.4E-47 T 13-10-2018 IPR017926 Glutamine amidotransferase CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 47.38 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 1.2E-144 T 13-10-2018 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 135 1.6E-52 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 SMART SM01097 3 136 1.9E-91 T 13-10-2018 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_10815 64467b392d85f295e71b5e35aec92ce0 379 SUPERFAMILY SSF52317 157 376 3.0E-61 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_06505 4dbf31e13bb4c0b8ef95cb6ebfbdaf80 377 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3 366 1.8E-132 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CDG55_06505 4dbf31e13bb4c0b8ef95cb6ebfbdaf80 377 Gene3D G3DSA:2.30.30.280 215 282 9.4E-25 T 13-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CDG55_06505 4dbf31e13bb4c0b8ef95cb6ebfbdaf80 377 Gene3D G3DSA:2.40.30.10 284 374 1.4E-28 T 13-10-2018 CDG55_06505 4dbf31e13bb4c0b8ef95cb6ebfbdaf80 377 Pfam PF03054 tRNA methyl transferase 3 366 3.6E-133 T 13-10-2018 CDG55_06505 4dbf31e13bb4c0b8ef95cb6ebfbdaf80 377 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 3 367 38.816 T 13-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 CDG55_06505 4dbf31e13bb4c0b8ef95cb6ebfbdaf80 377 SUPERFAMILY SSF52402 2 245 1.07E-55 T 13-10-2018 CDG55_06505 4dbf31e13bb4c0b8ef95cb6ebfbdaf80 377 Gene3D G3DSA:3.40.50.620 1 214 6.0E-89 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 Gene3D G3DSA:3.30.70.2520 297 389 7.7E-26 T 13-10-2018 CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 Pfam PF01565 FAD binding domain 20 153 8.6E-19 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 Gene3D G3DSA:1.10.45.10 391 428 2.3E-9 T 13-10-2018 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 PIRSF PIRSF000136 1 428 4.7E-104 T 13-10-2018 IPR010031 L-gulonolactone/D-arabinono-1,4-lactone oxidase GO:0016899|GO:0055114 CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 Gene3D G3DSA:3.30.465.10 70 194 4.2E-30 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 TIGRFAM TIGR01679 bact_FAD_ox: FAD-linked oxidoreductase 9 426 2.4E-136 T 13-10-2018 CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 SUPERFAMILY SSF56176 3 183 7.05E-36 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 Pfam PF04030 D-arabinono-1,4-lactone oxidase 177 424 4.1E-58 T 13-10-2018 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 CDG55_10540 ec2d66582e47f806710aeb059ed42245 428 Gene3D G3DSA:3.30.43.10 4 68 1.0E-21 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 706 720 5.7E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 644 662 5.7E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 673 691 5.7E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 617 5.7E-43 T 13-10-2018 IPR001270 ClpA/B family GO:0005524 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 SUPERFAMILY SSF52540 544 851 2.51E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 SUPERFAMILY SSF52540 157 543 8.38E-96 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Gene3D G3DSA:1.10.1780.10 1 145 3.6E-28 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 SMART SM00382 195 340 2.9E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 SMART SM00382 595 744 9.2E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 843 8.0E-26 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 66 9.6E-4 T 13-10-2018 IPR004176 Clp, N-terminal CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 92 142 1.2E-9 T 13-10-2018 IPR004176 Clp, N-terminal CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 SUPERFAMILY SSF81923 4 153 6.38E-35 T 13-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Gene3D G3DSA:1.10.8.60 764 858 1.2E-27 T 13-10-2018 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Gene3D G3DSA:3.40.50.300 345 542 5.0E-65 T 13-10-2018 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 853 0.0 T 13-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 200 331 2.4E-13 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Gene3D G3DSA:3.40.50.300 155 344 1.6E-73 T 13-10-2018 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Pfam PF07724 AAA domain (Cdc48 subfamily) 594 757 4.4E-56 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 SMART SM01086 764 853 9.1E-35 T 13-10-2018 IPR019489 Clp ATPase, C-terminal CDG55_07465 37dbd2e4d4eeeeaf26a4f50c40bf2622 859 Gene3D G3DSA:3.40.50.300 548 762 3.0E-88 T 13-10-2018 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 455 7.5E-118 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 Gene3D G3DSA:3.40.140.20 387 524 3.7E-61 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 SUPERFAMILY SSF53927 212 524 8.12E-129 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 SMART SM00851 15 128 3.8E-61 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 Gene3D G3DSA:3.40.140.20 209 365 1.8E-55 T 13-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 SUPERFAMILY SSF52335 3 192 1.44E-71 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4 524 6.7E-239 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 PIRSF PIRSF000414 1 524 1.3E-221 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 524 45.52 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 Pfam PF02142 MGS-like domain 15 128 2.8E-30 T 13-10-2018 IPR011607 Methylglyoxal synthase-like domain CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 SMART SM00798 133 456 6.7E-209 T 13-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_09910 7d8d1fca0d2c8fe71ca0afe9f956ba42 524 Gene3D G3DSA:3.40.50.1380 1 195 6.3E-85 T 13-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily CDG55_09650 a110a1b2469684365507069f06c35a9c 238 SUPERFAMILY SSF55174 1 46 4.51E-7 T 13-10-2018 CDG55_09650 a110a1b2469684365507069f06c35a9c 238 Gene3D G3DSA:3.10.290.10 1 57 1.9E-8 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CDG55_09650 a110a1b2469684365507069f06c35a9c 238 SUPERFAMILY SSF55120 46 226 1.17E-37 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_09650 a110a1b2469684365507069f06c35a9c 238 SMART SM00363 1 69 1.2E-4 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_09650 a110a1b2469684365507069f06c35a9c 238 Pfam PF00849 RNA pseudouridylate synthase 62 193 6.6E-17 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_09650 a110a1b2469684365507069f06c35a9c 238 Gene3D G3DSA:3.30.70.580 62 225 4.8E-50 T 13-10-2018 CDG55_09650 a110a1b2469684365507069f06c35a9c 238 Pfam PF01479 S4 domain 3 42 3.6E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_09650 a110a1b2469684365507069f06c35a9c 238 Gene3D G3DSA:3.30.70.1560 129 210 4.8E-50 T 13-10-2018 CDG55_09650 a110a1b2469684365507069f06c35a9c 238 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 6.2E-39 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 SUPERFAMILY SSF46785 1 110 2.45E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 Gene3D G3DSA:3.40.190.290 92 286 4.9E-40 T 13-10-2018 CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 Pfam PF03466 LysR substrate binding domain 87 284 2.2E-41 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 SUPERFAMILY SSF53850 88 284 3.16E-40 T 13-10-2018 CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 Gene3D G3DSA:1.10.10.10 1 91 2.4E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_12905 6a3374b28e83d74f78db14bcd911d51f 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 2.1E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_13265 3f20a4de1106dafb446aef48b288f4a9 472 SUPERFAMILY SSF52540 40 223 2.99E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13265 3f20a4de1106dafb446aef48b288f4a9 472 SUPERFAMILY SSF52540 281 470 1.17E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13265 3f20a4de1106dafb446aef48b288f4a9 472 Gene3D G3DSA:3.40.50.300 226 472 8.4E-94 T 13-10-2018 CDG55_13265 3f20a4de1106dafb446aef48b288f4a9 472 Gene3D G3DSA:3.40.50.300 3 225 1.5E-42 T 13-10-2018 CDG55_13265 3f20a4de1106dafb446aef48b288f4a9 472 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 253 471 3.6E-79 T 13-10-2018 IPR022488 Polyphosphate kinase-2-related CDG55_13265 3f20a4de1106dafb446aef48b288f4a9 472 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 19 222 2.4E-23 T 13-10-2018 IPR022488 Polyphosphate kinase-2-related CDG55_08170 0d1850bc3cf05cb911a5939cb6a985f9 226 SUPERFAMILY SSF51366 3 225 4.4E-72 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CDG55_08170 0d1850bc3cf05cb911a5939cb6a985f9 226 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 4 222 1.6E-58 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_08170 0d1850bc3cf05cb911a5939cb6a985f9 226 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 1 226 35.214 T 13-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_08170 0d1850bc3cf05cb911a5939cb6a985f9 226 SMART SM00934 2 222 1.5E-95 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_08170 0d1850bc3cf05cb911a5939cb6a985f9 226 Gene3D G3DSA:3.20.20.70 2 226 4.3E-81 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_08170 0d1850bc3cf05cb911a5939cb6a985f9 226 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 3 220 6.3E-49 T 13-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_11750 c5577f5c03ea8e9411f5ccf007c7da7a 267 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 245 6.1E-76 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDG55_11750 c5577f5c03ea8e9411f5ccf007c7da7a 267 Pfam PF00290 Tryptophan synthase alpha chain 8 259 1.9E-87 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDG55_11750 c5577f5c03ea8e9411f5ccf007c7da7a 267 Gene3D G3DSA:3.20.20.70 1 267 2.9E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_11750 c5577f5c03ea8e9411f5ccf007c7da7a 267 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 12 262 34.022 T 13-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 CDG55_11750 c5577f5c03ea8e9411f5ccf007c7da7a 267 SUPERFAMILY SSF51366 1 247 3.01E-89 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CDG55_10300 430f58402f25b5a182df98e9c0d21bcd 203 Pfam PF08281 Sigma-70, region 4 134 183 1.2E-16 T 13-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 CDG55_10300 430f58402f25b5a182df98e9c0d21bcd 203 SUPERFAMILY SSF88659 105 192 4.14E-16 T 13-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like CDG55_10300 430f58402f25b5a182df98e9c0d21bcd 203 Pfam PF04542 Sigma-70 region 2 45 94 5.7E-5 T 13-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 CDG55_10300 430f58402f25b5a182df98e9c0d21bcd 203 Gene3D G3DSA:1.10.10.10 117 193 1.2E-16 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_10300 430f58402f25b5a182df98e9c0d21bcd 203 SUPERFAMILY SSF88946 42 98 1.73E-7 T 13-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 CDG55_10300 430f58402f25b5a182df98e9c0d21bcd 203 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 39 189 2.3E-21 T 13-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 CDG55_09740 8b3921399c6cbb133cfa966ae792fbac 244 SUPERFAMILY SSF56235 2 240 3.26E-36 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_09740 8b3921399c6cbb133cfa966ae792fbac 244 Pfam PF00227 Proteasome subunit 4 173 5.9E-8 T 13-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 CDG55_09740 8b3921399c6cbb133cfa966ae792fbac 244 PIRSF PIRSF009120 1 243 3.2E-108 T 13-10-2018 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 CDG55_09740 8b3921399c6cbb133cfa966ae792fbac 244 Gene3D G3DSA:3.60.20.10 2 238 3.3E-28 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_12080 767929a1e81b1b42862921b467f92758 266 Gene3D G3DSA:1.10.260.40 18 124 1.5E-21 T 13-10-2018 CDG55_12080 767929a1e81b1b42862921b467f92758 266 Pfam PF13413 Helix-turn-helix domain 29 89 3.8E-18 T 13-10-2018 CDG55_12080 767929a1e81b1b42862921b467f92758 266 Pfam PF13464 Domain of unknown function (DUF4115) 193 264 1.6E-11 T 13-10-2018 IPR025194 Domain of unknown function DUF4115 CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 Gene3D G3DSA:1.10.4030.30 31 280 4.8E-44 T 13-10-2018 CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 Gene3D G3DSA:3.10.50.40 179 275 4.8E-44 T 13-10-2018 CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 SUPERFAMILY SSF54534 180 276 5.17E-11 T 13-10-2018 CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 SUPERFAMILY SSF109998 31 193 3.53E-27 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 Hamap MF_01183 Chaperone SurA [surA]. 9 428 25.584 T 13-10-2018 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0043165|GO:0050821|GO:0051082|GO:0060274 CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 Gene3D G3DSA:3.10.50.40 281 420 6.3E-41 T 13-10-2018 CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 Pfam PF13616 PPIC-type PPIASE domain 278 383 1.1E-29 T 13-10-2018 CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 Pfam PF09312 SurA N-terminal domain 31 149 6.8E-24 T 13-10-2018 IPR015391 SurA N-terminal CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 SUPERFAMILY SSF54534 285 384 1.7E-31 T 13-10-2018 CDG55_08020 bedf1957177178ea7e00b6baa9df2ab8 436 Pfam PF00639 PPIC-type PPIASE domain 189 271 9.5E-5 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 CDG55_06035 894fc221da1d4866b7a34faa2ed0ce0b 229 Gene3D G3DSA:3.30.1370.110 94 224 7.4E-33 T 13-10-2018 CDG55_06035 894fc221da1d4866b7a34faa2ed0ce0b 229 Pfam PF01713 Smr domain 143 219 2.2E-20 T 13-10-2018 IPR002625 Smr domain CDG55_06035 894fc221da1d4866b7a34faa2ed0ce0b 229 SUPERFAMILY SSF160443 143 219 1.23E-13 T 13-10-2018 IPR036063 Smr domain superfamily CDG55_06035 894fc221da1d4866b7a34faa2ed0ce0b 229 SMART SM00463 138 219 9.3E-10 T 13-10-2018 IPR002625 Smr domain CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 Pfam PF00106 short chain dehydrogenase 3 194 5.3E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 SUPERFAMILY SSF51735 3 243 1.32E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 3.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 3.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 3.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 3.1E-22 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 3.8E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 3.8E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 3.8E-6 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_15075 03f0087b55b3fa5e968e362ca916ce08 247 Gene3D G3DSA:3.40.50.720 2 245 1.0E-53 T 13-10-2018 CDG55_10945 13cbe9966330d5fc7cda97b350e9de8b 203 Pfam PF09335 SNARE associated Golgi protein 32 162 4.4E-24 T 13-10-2018 IPR032816 SNARE associated Golgi protein CDG55_03260 6a9578164093a53363f29e7091e48a15 390 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 130 1.0E-35 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_03260 6a9578164093a53363f29e7091e48a15 390 SUPERFAMILY SSF56645 15 253 3.8E-87 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_03260 6a9578164093a53363f29e7091e48a15 390 SUPERFAMILY SSF47203 241 390 6.12E-44 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_03260 6a9578164093a53363f29e7091e48a15 390 Gene3D G3DSA:1.20.140.10 249 390 2.8E-40 T 13-10-2018 CDG55_03260 6a9578164093a53363f29e7091e48a15 390 Gene3D G3DSA:2.40.110.10 133 248 4.6E-42 T 13-10-2018 CDG55_03260 6a9578164093a53363f29e7091e48a15 390 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 242 389 1.8E-38 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_03260 6a9578164093a53363f29e7091e48a15 390 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 134 230 1.7E-26 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_03260 6a9578164093a53363f29e7091e48a15 390 Gene3D G3DSA:1.10.540.10 11 132 5.9E-39 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_03905 eb592f42073cf93311282fe9f45acb36 185 TIGRFAM TIGR02464 ribofla_fusion: conserved hypothetical protein 23 181 1.6E-56 T 13-10-2018 IPR012816 NADAR CDG55_03905 eb592f42073cf93311282fe9f45acb36 185 SUPERFAMILY SSF143990 12 184 1.31E-55 T 13-10-2018 IPR037238 YbiA-like superfamily CDG55_03905 eb592f42073cf93311282fe9f45acb36 185 Gene3D G3DSA:1.10.357.40 13 185 9.3E-46 T 13-10-2018 IPR037238 YbiA-like superfamily CDG55_03905 eb592f42073cf93311282fe9f45acb36 185 Pfam PF08719 Domain of unknown function (DUF1768) 25 182 3.2E-55 T 13-10-2018 IPR012816 NADAR CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF54106 1049 1094 1.44E-8 T 13-10-2018 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF54106 806 850 4.19E-9 T 13-10-2018 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SMART SM00257 587 631 1.1E-4 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SMART SM00257 1001 1045 7.7E-10 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SMART SM00257 929 973 2.0E-10 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SMART SM00257 858 902 5.9E-10 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SMART SM00257 729 774 8.3E-5 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SMART SM00257 1050 1094 4.5E-11 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SMART SM00257 650 694 1.6E-12 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SMART SM00257 806 850 6.1E-13 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:3.10.350.10 645 708 7.9E-13 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF54106 858 901 5.36E-8 T 13-10-2018 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:3.10.350.10 579 639 2.0E-10 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:3.10.350.10 1048 1096 2.3E-12 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:3.10.350.10 793 855 4.4E-14 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:3.10.350.10 856 913 1.1E-11 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:3.10.350.10 988 1047 9.8E-14 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:3.10.350.10 914 987 5.6E-13 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF53955 130 289 5.96E-42 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF54106 929 972 1.1E-7 T 13-10-2018 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF54106 1001 1045 8.89E-8 T 13-10-2018 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:1.10.530.10 128 276 1.1E-30 T 13-10-2018 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Gene3D G3DSA:3.10.350.10 716 790 1.4E-8 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF54106 586 630 3.01E-8 T 13-10-2018 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01476 LysM domain 651 693 1.1E-11 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01476 LysM domain 1051 1094 3.7E-10 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01476 LysM domain 930 972 1.3E-9 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01476 LysM domain 859 901 1.5E-9 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01476 LysM domain 1002 1045 2.1E-9 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01476 LysM domain 588 628 1.1E-9 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01476 LysM domain 730 774 1.4E-7 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01476 LysM domain 807 850 5.6E-12 T 13-10-2018 IPR018392 LysM domain CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 Pfam PF01464 Transglycosylase SLT domain 138 240 6.0E-24 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF54106 728 774 1.44E-5 T 13-10-2018 CDG55_05940 ddcbcd4ca5e1ce3aca396e27e107085d 1096 SUPERFAMILY SSF54106 649 693 3.92E-9 T 13-10-2018 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 SUPERFAMILY SSF69055 302 393 7.19E-29 T 13-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 394 3.3E-143 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 392 44.421 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 Gene3D G3DSA:1.10.1740.10 313 398 6.3E-30 T 13-10-2018 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 SUPERFAMILY SSF55347 127 274 1.67E-59 T 13-10-2018 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 PIRSF PIRSF006205 2 396 5.9E-146 T 13-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 133 2.0E-42 T 13-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 Gene3D G3DSA:3.40.50.720 1 151 2.5E-53 T 13-10-2018 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 386 1.2E-39 T 13-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 147 239 6.6E-37 T 13-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 CDG55_08930 852f2a33e87fa330fc70dd0fa626c099 398 SUPERFAMILY SSF51735 4 151 7.75E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_11305 ded0bb56e4906f73295639e2d643c048 186 Hamap MF_00528 Septum formation protein Maf [maf]. 3 186 29.12 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CDG55_11305 ded0bb56e4906f73295639e2d643c048 186 Pfam PF02545 Maf-like protein 3 183 3.2E-56 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CDG55_11305 ded0bb56e4906f73295639e2d643c048 186 PIRSF PIRSF006305 1 186 1.1E-51 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CDG55_11305 ded0bb56e4906f73295639e2d643c048 186 SUPERFAMILY SSF52972 2 182 1.57E-58 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CDG55_11305 ded0bb56e4906f73295639e2d643c048 186 Gene3D G3DSA:3.90.950.10 1 186 1.5E-65 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CDG55_11305 ded0bb56e4906f73295639e2d643c048 186 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 181 1.2E-51 T 13-10-2018 IPR003697 Maf-like protein GO:0047429 CDG55_04570 0cf496ee907fb7ea713669274e067132 250 Pfam PF03099 Biotin/lipoate A/B protein ligase family 38 142 4.3E-9 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CDG55_04570 0cf496ee907fb7ea713669274e067132 250 Pfam PF02237 Biotin protein ligase C terminal domain 204 236 1.6E-6 T 13-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_04570 0cf496ee907fb7ea713669274e067132 250 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 27 245 2.6E-39 T 13-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_04570 0cf496ee907fb7ea713669274e067132 250 SUPERFAMILY SSF55681 13 193 4.47E-36 T 13-10-2018 CDG55_04570 0cf496ee907fb7ea713669274e067132 250 Gene3D G3DSA:3.30.930.10 1 202 4.4E-39 T 13-10-2018 CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 Gene3D G3DSA:1.20.140.10 288 464 4.1E-39 T 13-10-2018 CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 SUPERFAMILY SSF47203 287 476 2.26E-42 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 272 3.0E-18 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 SUPERFAMILY SSF56645 37 280 9.42E-61 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 28 4.3E-9 T 13-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 Gene3D G3DSA:2.40.110.10 161 287 5.6E-29 T 13-10-2018 CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 472 598 2.4E-29 T 13-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 Gene3D G3DSA:1.10.540.10 33 159 1.4E-20 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 38 157 3.6E-17 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_02945 2da30dd809f3ea13015ba889404323f7 607 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 454 4.9E-19 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_03585 228846977fb842bf81b42f810972fad0 298 Gene3D G3DSA:1.10.10.800 141 223 1.8E-44 T 13-10-2018 CDG55_03585 228846977fb842bf81b42f810972fad0 298 Pfam PF12146 Serine aminopeptidase, S33 32 259 1.0E-12 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 CDG55_03585 228846977fb842bf81b42f810972fad0 298 Gene3D G3DSA:3.40.50.1820 16 275 1.8E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_03585 228846977fb842bf81b42f810972fad0 298 SUPERFAMILY SSF53474 4 296 1.89E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_02290 63274e1c780047d2539e6ff444416125 504 Gene3D G3DSA:3.40.1080.20 336 477 5.4E-37 T 13-10-2018 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily CDG55_02290 63274e1c780047d2539e6ff444416125 504 SUPERFAMILY SSF100950 4 222 8.84E-74 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CDG55_02290 63274e1c780047d2539e6ff444416125 504 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 12 494 1.8E-234 T 13-10-2018 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 CDG55_02290 63274e1c780047d2539e6ff444416125 504 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 321 463 2.5E-39 T 13-10-2018 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain CDG55_02290 63274e1c780047d2539e6ff444416125 504 SUPERFAMILY SSF100950 225 494 4.02E-83 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CDG55_02290 63274e1c780047d2539e6ff444416125 504 Gene3D G3DSA:3.30.750.70 245 329 2.9E-6 T 13-10-2018 CDG55_02290 63274e1c780047d2539e6ff444416125 504 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 11 215 3.9E-32 T 13-10-2018 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 CDG55_02290 63274e1c780047d2539e6ff444416125 504 Gene3D G3DSA:3.40.1080.10 13 184 3.5E-17 T 13-10-2018 CDG55_07490 62c0c64f1cd187725409e567118bd9a1 410 Gene3D G3DSA:3.20.20.140 53 364 4.1E-82 T 13-10-2018 CDG55_07490 62c0c64f1cd187725409e567118bd9a1 410 SUPERFAMILY SSF51556 53 363 2.97E-68 T 13-10-2018 IPR032466 Metal-dependent hydrolase CDG55_07490 62c0c64f1cd187725409e567118bd9a1 410 SUPERFAMILY SSF51338 5 409 7.13E-11 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CDG55_07490 62c0c64f1cd187725409e567118bd9a1 410 Gene3D G3DSA:2.30.40.10 10 409 4.1E-82 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CDG55_12415 9b8103841731e26b1d1179bfa7747009 233 Pfam PF13972 Bacterial transcriptional repressor 62 208 9.9E-38 T 13-10-2018 IPR025722 Bacterial transcriptional repressor TetR CDG55_12415 9b8103841731e26b1d1179bfa7747009 233 SUPERFAMILY SSF46689 4 80 7.98E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_12415 9b8103841731e26b1d1179bfa7747009 233 Gene3D G3DSA:1.10.357.10 5 219 3.3E-65 T 13-10-2018 CDG55_12415 9b8103841731e26b1d1179bfa7747009 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 1.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_12415 9b8103841731e26b1d1179bfa7747009 233 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 1.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_12415 9b8103841731e26b1d1179bfa7747009 233 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 1.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 PRINTS PR00340 P-II protein signature 83 103 2.7E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 PRINTS PR00340 P-II protein signature 23 41 2.7E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 PRINTS PR00340 P-II protein signature 52 75 2.7E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 PRINTS PR00340 P-II protein signature 2 17 2.7E-44 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 Gene3D G3DSA:3.30.70.120 1 112 9.6E-47 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 PIRSF PIRSF039144 1 112 5.5E-55 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 2.2E-43 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 SUPERFAMILY SSF54913 1 112 4.45E-46 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CDG55_13975 22469da245ee0ac210dcf1e38fbd14d0 112 SMART SM00938 4 105 2.5E-66 T 13-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 CDG55_15045 b11aad0f9fc95010d309f63e6239c03b 430 Pfam PF01471 Putative peptidoglycan binding domain 365 419 8.5E-11 T 13-10-2018 IPR002477 Peptidoglycan binding-like CDG55_15045 b11aad0f9fc95010d309f63e6239c03b 430 SUPERFAMILY SSF53955 39 349 1.11E-94 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_15045 b11aad0f9fc95010d309f63e6239c03b 430 SUPERFAMILY SSF47090 352 424 1.88E-15 T 13-10-2018 IPR036365 PGBD-like superfamily CDG55_15045 b11aad0f9fc95010d309f63e6239c03b 430 Pfam PF13406 Transglycosylase SLT domain 49 344 6.6E-105 T 13-10-2018 IPR031304 Transglycosylase SLT domain 2 CDG55_15045 b11aad0f9fc95010d309f63e6239c03b 430 Gene3D G3DSA:1.10.530.10 91 343 6.2E-83 T 13-10-2018 CDG55_15045 b11aad0f9fc95010d309f63e6239c03b 430 Gene3D G3DSA:1.10.101.10 354 424 1.6E-8 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CDG55_15045 b11aad0f9fc95010d309f63e6239c03b 430 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 48 347 1.6E-109 T 13-10-2018 IPR011970 Lytic murein transglycosylase CDG55_15045 b11aad0f9fc95010d309f63e6239c03b 430 Gene3D G3DSA:1.10.8.350 64 224 6.2E-83 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 20 71 1.6E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Gene3D G3DSA:3.40.50.740 92 535 1.3E-166 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Gene3D G3DSA:3.40.228.10 155 357 1.3E-166 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Gene3D G3DSA:2.40.40.20 611 731 8.1E-39 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 PIRSF PIRSF036643 876 925 130.0 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 PIRSF PIRSF036643 2 754 2.1E-149 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 SUPERFAMILY SSF50692 604 743 2.71E-41 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Gene3D G3DSA:1.10.10.1100 869 923 1.5E-5 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Pfam PF00384 Molybdopterin oxidoreductase 77 505 9.4E-78 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Gene3D G3DSA:2.20.25.90 19 73 4.5E-16 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Pfam PF04324 BFD-like [2Fe-2S] binding domain 869 918 1.1E-11 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 SMART SM00926 17 74 4.9E-17 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 SUPERFAMILY SSF53706 19 616 4.71E-179 T 13-10-2018 CDG55_09070 84c8ccb5c4293c5b6b48d99f89e987ed 926 Pfam PF01568 Molydopterin dinucleotide binding domain 614 725 2.1E-28 T 13-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 CDG55_13435 3e5823b0a8ed1f0787df613a78bf990d 184 Pfam PF02622 Uncharacterized ACR, COG1678 15 171 5.1E-43 T 13-10-2018 IPR003774 Protein of unknown function UPF0301 CDG55_13435 3e5823b0a8ed1f0787df613a78bf990d 184 Gene3D G3DSA:3.40.1740.10 1 184 9.6E-72 T 13-10-2018 CDG55_13435 3e5823b0a8ed1f0787df613a78bf990d 184 SUPERFAMILY SSF143456 4 184 7.19E-58 T 13-10-2018 CDG55_13435 3e5823b0a8ed1f0787df613a78bf990d 184 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 4 184 32.855 T 13-10-2018 IPR003774 Protein of unknown function UPF0301 CDG55_06985 e9a1076aee4b1635988c31c2eb36fab5 142 Pfam PF05232 Chlorhexidine efflux transporter 70 133 7.4E-22 T 13-10-2018 IPR007896 Chlorhexidine efflux transporter CDG55_06985 e9a1076aee4b1635988c31c2eb36fab5 142 Pfam PF05232 Chlorhexidine efflux transporter 5 64 9.5E-17 T 13-10-2018 IPR007896 Chlorhexidine efflux transporter CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 Pfam PF03466 LysR substrate binding domain 109 298 1.4E-9 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 Gene3D G3DSA:3.40.190.10 182 275 1.1E-37 T 13-10-2018 CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 SUPERFAMILY SSF46785 15 94 9.52E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 79 5.1E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 Gene3D G3DSA:3.40.190.10 109 298 1.1E-37 T 13-10-2018 CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 56 6.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 46 6.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 56 67 6.4E-6 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 SUPERFAMILY SSF53850 110 303 1.52E-27 T 13-10-2018 CDG55_15095 f61b788c2a61a174484186cd4884a1ca 310 Gene3D G3DSA:1.10.10.10 11 98 3.6E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04325 9973b4a0fddb5957f33f0aadbfd6d405 225 SUPERFAMILY SSF56770 42 182 7.06E-64 T 13-10-2018 CDG55_04325 9973b4a0fddb5957f33f0aadbfd6d405 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 88 172 3.1E-22 T 13-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04325 9973b4a0fddb5957f33f0aadbfd6d405 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 35 179 1.6E-68 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04325 9973b4a0fddb5957f33f0aadbfd6d405 225 Gene3D G3DSA:3.40.50.12280 20 190 2.9E-70 T 13-10-2018 CDG55_04325 9973b4a0fddb5957f33f0aadbfd6d405 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 25 179 42.812 T 13-10-2018 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 SUPERFAMILY SSF82693 583 680 2.35E-5 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Gene3D G3DSA:3.30.70.1430 582 684 1.8E-284 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 SUPERFAMILY SSF82693 169 347 1.83E-18 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Gene3D G3DSA:3.30.70.1440 685 883 1.8E-284 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 16 1052 0.0 T 13-10-2018 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 SUPERFAMILY SSF82714 740 822 2.09E-15 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Gene3D G3DSA:3.30.2090.10 739 826 1.8E-284 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Pfam PF00873 AcrB/AcrD/AcrF family 19 1041 0.0 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 SUPERFAMILY SSF82693 56 142 2.88E-22 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 SUPERFAMILY SSF82714 207 289 1.11E-14 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Gene3D G3DSA:1.20.1640.10 530 1039 1.8E-284 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Gene3D G3DSA:3.30.2090.10 202 292 1.8E-284 T 13-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 PRINTS PR00702 Acriflavin resistance protein family signature 380 401 8.3E-18 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 PRINTS PR00702 Acriflavin resistance protein family signature 353 376 8.3E-18 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 PRINTS PR00702 Acriflavin resistance protein family signature 494 517 8.3E-18 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 PRINTS PR00702 Acriflavin resistance protein family signature 54 72 8.3E-18 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 PRINTS PR00702 Acriflavin resistance protein family signature 26 50 8.3E-18 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 SUPERFAMILY SSF82866 824 1043 2.09E-50 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 SUPERFAMILY SSF82866 313 520 7.32E-35 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Gene3D G3DSA:3.30.70.1430 56 834 1.8E-284 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Gene3D G3DSA:1.20.1640.10 26 529 1.8E-284 T 13-10-2018 CDG55_02355 6cbaeaa0c03e550f3b4675e02ea8be74 1055 Gene3D G3DSA:3.30.70.1320 150 349 1.8E-284 T 13-10-2018 CDG55_09560 b493a9ac319ea1f5f65b19749b5a6e3c 354 SUPERFAMILY SSF46689 299 349 1.79E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_09560 b493a9ac319ea1f5f65b19749b5a6e3c 354 Gene3D G3DSA:1.10.10.60 243 353 2.3E-27 T 13-10-2018 CDG55_09560 b493a9ac319ea1f5f65b19749b5a6e3c 354 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 217 9.4E-23 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_09560 b493a9ac319ea1f5f65b19749b5a6e3c 354 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 330 346 1.6E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_09560 b493a9ac319ea1f5f65b19749b5a6e3c 354 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 315 330 1.6E-7 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_09560 b493a9ac319ea1f5f65b19749b5a6e3c 354 Pfam PF12833 Helix-turn-helix domain 270 347 4.5E-24 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_09560 b493a9ac319ea1f5f65b19749b5a6e3c 354 SMART SM00342 264 346 3.2E-29 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 Gene3D G3DSA:1.10.287.130 223 291 4.6E-22 T 13-10-2018 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 Gene3D G3DSA:3.30.565.10 292 448 4.3E-39 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 SMART SM00388 224 290 1.3E-17 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 SUPERFAMILY SSF55874 279 445 4.45E-44 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 Pfam PF13188 PAS domain 119 178 3.5E-5 T 13-10-2018 IPR000014 PAS domain CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 SMART SM00387 335 447 2.0E-35 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 386 1.2E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 400 1.2E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 431 444 1.2E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 425 1.2E-13 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 Pfam PF11808 Domain of unknown function (DUF3329) 27 106 7.9E-15 T 13-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 116 443 2.5E-121 T 13-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 446 1.1E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 SUPERFAMILY SSF47384 213 291 8.44E-19 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 289 3.3E-16 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 Gene3D G3DSA:3.30.450.20 118 222 4.1E-7 T 13-10-2018 CDG55_01575 b78395590f14fc2835c38a3bda0a102c 452 SUPERFAMILY SSF55785 125 162 6.85E-5 T 13-10-2018 IPR035965 PAS domain superfamily CDG55_12360 3fff418710c2c00a08ad931f39c7b3b5 234 Pfam PF11306 Protein of unknown function (DUF3108) 27 228 1.3E-22 T 13-10-2018 IPR021457 Protein of unknown function DUF3108 CDG55_05040 7b3eaa46db342adcd26c310ac3c3c066 293 PIRSF PIRSF007580 2 293 6.7E-69 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 CDG55_05040 7b3eaa46db342adcd26c310ac3c3c066 293 Pfam PF10118 Predicted metal-dependent hydrolase 17 279 1.8E-76 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 CDG55_11890 d827872923496909270f6fe9ac832aaf 288 PIRSF PIRSF026649 3 285 1.5E-62 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CDG55_11890 d827872923496909270f6fe9ac832aaf 288 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 6 279 1.4E-41 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 Pfam PF04434 SWIM zinc finger 63 85 1.4E-4 T 13-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 SUPERFAMILY SSF52540 636 862 5.52E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 Pfam PF00176 SNF2 family N-terminal domain 662 934 2.1E-67 T 13-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 Gene3D G3DSA:1.20.120.850 884 1107 6.7E-82 T 13-10-2018 CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 Pfam PF00271 Helicase conserved C-terminal domain 949 1058 8.4E-19 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 SMART SM00487 646 831 4.4E-34 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 Gene3D G3DSA:3.40.50.300 869 1072 6.7E-82 T 13-10-2018 CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 Gene3D G3DSA:3.40.50.10810 651 863 3.6E-68 T 13-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 SMART SM00490 978 1058 2.7E-23 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_14520 7baef357defb13d7dc973a5f97e20f04 1115 SUPERFAMILY SSF52540 864 1113 1.4E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14865 c5f75c9c7f87456e4e447e8d253277cc 211 SUPERFAMILY SSF46689 12 69 7.18E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_14865 c5f75c9c7f87456e4e447e8d253277cc 211 Gene3D G3DSA:1.10.357.10 4 170 1.2E-14 T 13-10-2018 CDG55_14865 c5f75c9c7f87456e4e447e8d253277cc 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 5.6E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14865 c5f75c9c7f87456e4e447e8d253277cc 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 9.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14865 c5f75c9c7f87456e4e447e8d253277cc 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 9.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_06905 3161a661857a0d69226cfce7f39eac46 158 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 29 152 1.3E-21 T 13-10-2018 IPR019223 Domain of unknown function DUF2147 CDG55_06905 3161a661857a0d69226cfce7f39eac46 158 Gene3D G3DSA:2.40.128.520 26 157 6.2E-16 T 13-10-2018 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 Pfam PF02954 Bacterial regulatory protein, Fis family 44 83 3.2E-15 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 50 67 1.3E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 67 87 1.3E-12 T 13-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 46 58 2.0E-9 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 31 46 2.0E-9 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 PRINTS PR01591 DNA-binding protein FIS signature 15 31 2.0E-9 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 PIRSF PIRSF002097 1 87 4.5E-35 T 13-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 Gene3D G3DSA:1.10.10.60 2 86 7.0E-27 T 13-10-2018 CDG55_09905 9beb2be0ff7814b76031033622824e1f 89 SUPERFAMILY SSF46689 15 86 6.27E-22 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 491 3.0E-190 T 13-10-2018 IPR004482 Mg chelatase-related protein CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 SUPERFAMILY SSF52540 189 492 1.57E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 392 1.1E-95 T 13-10-2018 IPR000523 Magnesium chelatase ChlI domain CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 9.6E-45 T 13-10-2018 CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 Gene3D G3DSA:3.40.50.300 178 495 3.1E-56 T 13-10-2018 CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 Gene3D G3DSA:3.30.230.10 13 169 5.1E-9 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 SUPERFAMILY SSF54211 11 169 1.52E-34 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 SMART SM00382 210 390 3.5E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_13985 c6f953f81494b6abe7863a7a0e4f8891 495 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 491 6.6E-27 T 13-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain CDG55_05500 e23af29ff773f3d1e55617eb55824608 209 SUPERFAMILY SSF52266 29 207 3.21E-47 T 13-10-2018 CDG55_05500 e23af29ff773f3d1e55617eb55824608 209 Gene3D G3DSA:3.40.50.1110 27 209 8.8E-66 T 13-10-2018 IPR036514 SGNH hydrolase superfamily CDG55_05500 e23af29ff773f3d1e55617eb55824608 209 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 34 193 2.2E-25 T 13-10-2018 IPR013830 SGNH hydrolase-type esterase domain CDG55_12510 68772cddebe938e7b362b75ad4a6b337 779 SUPERFAMILY SSF52540 5 752 4.67E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12510 68772cddebe938e7b362b75ad4a6b337 779 Gene3D G3DSA:3.40.50.300 529 767 1.0E-12 T 13-10-2018 CDG55_12510 68772cddebe938e7b362b75ad4a6b337 779 Pfam PF13476 AAA domain 8 235 1.3E-14 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain CDG55_12510 68772cddebe938e7b362b75ad4a6b337 779 Gene3D G3DSA:3.40.50.300 5 251 6.5E-18 T 13-10-2018 CDG55_08075 7788032eb799b1c50d05c25243b912c8 253 Gene3D G3DSA:3.90.550.10 1 252 5.8E-91 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_08075 7788032eb799b1c50d05c25243b912c8 253 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 4 242 5.9E-78 T 13-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 CDG55_08075 7788032eb799b1c50d05c25243b912c8 253 SUPERFAMILY SSF53448 3 246 2.28E-53 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_08075 7788032eb799b1c50d05c25243b912c8 253 Pfam PF02348 Cytidylyltransferase 4 222 4.9E-49 T 13-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 CDG55_08075 7788032eb799b1c50d05c25243b912c8 253 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 249 36.328 T 13-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 Gene3D G3DSA:2.40.50.140 40 133 6.9E-9 T 13-10-2018 CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 SMART SM00490 493 577 2.2E-21 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 SUPERFAMILY SSF52540 282 639 2.55E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 Pfam PF00271 Helicase conserved C-terminal domain 466 576 2.4E-17 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 SUPERFAMILY SSF52540 188 442 2.05E-60 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 Gene3D G3DSA:3.40.50.300 446 618 5.5E-53 T 13-10-2018 CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 23 651 3.8E-226 T 13-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 SMART SM00487 255 448 4.6E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 SUPERFAMILY SSF50249 2 166 1.01E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 Pfam PF17191 RecG wedge domain 5 164 2.9E-22 T 13-10-2018 IPR033454 RecG, wedge domain CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 Pfam PF00270 DEAD/DEAH box helicase 261 422 9.1E-20 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDG55_03035 c1361c1d76327782317f9ea538b44e82 681 Gene3D G3DSA:3.40.50.300 197 439 6.2E-84 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 SUPERFAMILY SSF118215 3 404 4.05E-107 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 Pfam PF00375 Sodium:dicarboxylate symporter family 3 403 6.2E-118 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 Gene3D G3DSA:1.10.3860.10 1 413 7.4E-124 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 1 21 3.4E-55 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 331 350 3.4E-55 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 47 67 3.4E-55 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 3.4E-55 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 296 322 3.4E-55 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 229 248 3.4E-55 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 3.4E-55 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 3.4E-55 T 13-10-2018 CDG55_03065 c467d2798baf17b0b905a79efbea6bd4 413 PRINTS PR00173 Glutamate-aspartate symporter signature 77 102 3.4E-55 T 13-10-2018 CDG55_00710 224319b0aa7a674fccf6395a6ffb6cf7 399 Pfam PF13356 Arm DNA-binding domain 3 74 8.5E-10 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CDG55_00710 224319b0aa7a674fccf6395a6ffb6cf7 399 Gene3D G3DSA:1.10.443.10 202 390 8.2E-13 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_00710 224319b0aa7a674fccf6395a6ffb6cf7 399 Gene3D G3DSA:1.10.150.130 83 201 3.0E-20 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_00710 224319b0aa7a674fccf6395a6ffb6cf7 399 Gene3D G3DSA:3.30.160.390 1 77 1.1E-20 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CDG55_00710 224319b0aa7a674fccf6395a6ffb6cf7 399 Pfam PF00589 Phage integrase family 226 379 2.7E-13 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_00710 224319b0aa7a674fccf6395a6ffb6cf7 399 SUPERFAMILY SSF56349 89 389 7.06E-43 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 Hamap MF_01576 Bifunctional protein FolD [folD]. 2 281 34.496 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 127 280 1.1E-60 T 13-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 203 232 1.1E-61 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 237 253 1.1E-61 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 154 174 1.1E-61 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 254 272 1.1E-61 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 74 101 1.1E-61 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 33 55 1.1E-61 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 109 130 1.1E-61 T 13-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 Gene3D G3DSA:3.40.50.10860 7 275 2.5E-100 T 13-10-2018 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 4 120 4.9E-37 T 13-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 SUPERFAMILY SSF51735 127 278 4.59E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 Gene3D G3DSA:3.40.50.720 5 257 2.5E-100 T 13-10-2018 CDG55_05370 889d0adc1087d7432631bc980cb4312a 282 SUPERFAMILY SSF53223 2 121 9.59E-37 T 13-10-2018 CDG55_04725 24ec71bafe733e8245c83fb99eac91b4 61 SUPERFAMILY SSF57829 2 54 1.16E-17 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CDG55_04725 24ec71bafe733e8245c83fb99eac91b4 61 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 53 1.7E-19 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_04725 24ec71bafe733e8245c83fb99eac91b4 61 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.516 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_04725 24ec71bafe733e8245c83fb99eac91b4 61 Pfam PF01783 Ribosomal L32p protein family 2 55 5.0E-20 T 13-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03010 dd0ebd869a0ca8a84ead1d6e4113cd72 210 Gene3D G3DSA:3.10.450.710 27 207 1.6E-44 T 13-10-2018 CDG55_03010 dd0ebd869a0ca8a84ead1d6e4113cd72 210 Pfam PF05494 MlaC protein 36 190 3.9E-36 T 13-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC CDG55_03010 dd0ebd869a0ca8a84ead1d6e4113cd72 210 PIRSF PIRSF004649 1 210 4.3E-54 T 13-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 Gene3D G3DSA:3.40.50.720 6 183 2.5E-51 T 13-10-2018 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 SUPERFAMILY SSF48179 181 288 5.78E-33 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 Gene3D G3DSA:3.65.10.10 318 734 8.7E-170 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 Gene3D G3DSA:1.10.3660.10 184 288 1.1E-34 T 13-10-2018 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 SUPERFAMILY SSF55205 309 742 6.38E-131 T 13-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 314 743 33.12 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 Pfam PF02153 Prephenate dehydrogenase 25 278 1.3E-67 T 13-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 SUPERFAMILY SSF51735 8 176 3.16E-44 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 313 735 6.4E-118 T 13-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 318 739 6.0E-130 T 13-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 CDG55_07885 a6fd3c6d48c02aab33aca77dea225938 749 Gene3D G3DSA:3.65.10.10 326 536 8.7E-170 T 13-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 Pfam PF00571 CBS domain 157 203 0.0012 T 13-10-2018 IPR000644 CBS domain CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 Pfam PF00571 CBS domain 89 137 6.9E-11 T 13-10-2018 IPR000644 CBS domain CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 456 8.6E-187 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 487 82.391 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 SUPERFAMILY SSF54631 93 202 9.98E-27 T 13-10-2018 CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 SMART SM01240 7 474 0.0 T 13-10-2018 CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 SMART SM00116 157 205 2.1E-5 T 13-10-2018 IPR000644 CBS domain CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 SMART SM00116 96 143 1.0E-8 T 13-10-2018 IPR000644 CBS domain CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 Gene3D G3DSA:3.20.20.70 2 487 2.0E-206 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 474 1.7E-158 T 13-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 PIRSF PIRSF000130 1 488 2.8E-201 T 13-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 CDG55_01860 565ec08c67aea5d1da7061c86b3b767f 488 SUPERFAMILY SSF51412 2 478 1.83E-124 T 13-10-2018 CDG55_05520 eb5f9bc826604297d8090147bdc7bc2c 224 SUPERFAMILY SSF53955 46 220 1.21E-61 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_05520 eb5f9bc826604297d8090147bdc7bc2c 224 Gene3D G3DSA:1.10.3810.10 42 223 2.5E-60 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_05520 eb5f9bc826604297d8090147bdc7bc2c 224 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 7 223 37.378 T 13-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_05520 eb5f9bc826604297d8090147bdc7bc2c 224 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 10 222 4.1E-95 T 13-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_05520 eb5f9bc826604297d8090147bdc7bc2c 224 Pfam PF00912 Transglycosylase 48 217 7.8E-58 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_08000 0187a88a9bb9fccafe5ccd594680bc8b 79 Gene3D G3DSA:3.30.110.40 2 78 2.7E-14 T 13-10-2018 IPR036868 TusA-like domain superfamily CDG55_08000 0187a88a9bb9fccafe5ccd594680bc8b 79 SUPERFAMILY SSF64307 7 77 1.57E-15 T 13-10-2018 IPR036868 TusA-like domain superfamily CDG55_08000 0187a88a9bb9fccafe5ccd594680bc8b 79 Pfam PF01206 Sulfurtransferase TusA 10 77 9.5E-17 T 13-10-2018 IPR001455 TusA-like domain CDG55_01550 6a217a798c765d59ec845aa938b3024a 283 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 55 281 7.2E-68 T 13-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 CDG55_01550 6a217a798c765d59ec845aa938b3024a 283 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 16 283 42.552 T 13-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 CDG55_01550 6a217a798c765d59ec845aa938b3024a 283 Pfam PF02666 Phosphatidylserine decarboxylase 69 280 3.8E-59 T 13-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 CDG55_03015 914a680149a19df7e068c49967081439 95 SUPERFAMILY SSF52091 9 92 2.55E-8 T 13-10-2018 IPR036513 STAS domain superfamily CDG55_03015 914a680149a19df7e068c49967081439 95 Pfam PF13466 STAS domain 11 84 5.7E-7 T 13-10-2018 IPR002645 STAS domain CDG55_03015 914a680149a19df7e068c49967081439 95 Gene3D G3DSA:3.30.750.24 8 95 1.8E-7 T 13-10-2018 IPR036513 STAS domain superfamily CDG55_07780 f804f1c0f7a64bc3345228e472379734 341 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 305 320 2.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_07780 f804f1c0f7a64bc3345228e472379734 341 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 320 336 2.2E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_07780 f804f1c0f7a64bc3345228e472379734 341 Pfam PF12833 Helix-turn-helix domain 261 337 5.6E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_07780 f804f1c0f7a64bc3345228e472379734 341 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 28 210 1.3E-24 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_07780 f804f1c0f7a64bc3345228e472379734 341 Gene3D G3DSA:1.10.10.60 235 339 1.4E-27 T 13-10-2018 CDG55_07780 f804f1c0f7a64bc3345228e472379734 341 SMART SM00342 254 336 1.5E-26 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_07780 f804f1c0f7a64bc3345228e472379734 341 SUPERFAMILY SSF46689 289 338 1.79E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_07095 cb809862337756b46c5c9fa8af6569bb 285 Pfam PF00459 Inositol monophosphatase family 17 259 3.5E-39 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_07095 cb809862337756b46c5c9fa8af6569bb 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 71 87 3.7E-5 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_07095 cb809862337756b46c5c9fa8af6569bb 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 92 108 3.7E-5 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_07095 cb809862337756b46c5c9fa8af6569bb 285 PRINTS PR00377 Inositol monophosphatase superfamily signature 49 69 3.7E-5 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_07095 cb809862337756b46c5c9fa8af6569bb 285 Gene3D G3DSA:3.40.190.80 163 269 1.4E-25 T 13-10-2018 CDG55_07095 cb809862337756b46c5c9fa8af6569bb 285 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 12 267 35.532 T 13-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 CDG55_07095 cb809862337756b46c5c9fa8af6569bb 285 Gene3D G3DSA:3.30.540.10 10 162 4.6E-34 T 13-10-2018 CDG55_07095 cb809862337756b46c5c9fa8af6569bb 285 SUPERFAMILY SSF56655 16 278 7.85E-58 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 4 244 7.0E-63 T 13-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 509 763 1.5E-72 T 13-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 1 907 18.191 T 13-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 SUPERFAMILY SSF81301 4 259 1.24E-66 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 SUPERFAMILY SSF81301 481 773 1.24E-80 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Gene3D G3DSA:1.20.120.1510 409 517 2.8E-17 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Gene3D G3DSA:1.20.120.330 258 408 3.5E-50 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Gene3D G3DSA:3.30.460.100 518 769 1.4E-78 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Gene3D G3DSA:3.30.460.100 13 255 4.0E-60 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 SUPERFAMILY SSF81593 260 409 6.83E-40 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Gene3D G3DSA:1.20.120.330 770 907 8.0E-44 T 13-10-2018 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Pfam PF08335 GlnD PII-uridylyltransferase 270 409 1.3E-42 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 Pfam PF08335 GlnD PII-uridylyltransferase 785 880 5.7E-11 T 13-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 CDG55_11940 0f4e25fbeb7ab9116cad5e429681af8c 915 SUPERFAMILY SSF81593 774 905 1.26E-31 T 13-10-2018 CDG55_00440 1d292c864f8e257a60c68520e98c4be0 121 Gene3D G3DSA:3.10.180.10 1 121 2.0E-40 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDG55_00440 1d292c864f8e257a60c68520e98c4be0 121 SUPERFAMILY SSF54593 5 120 6.34E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDG55_08985 dd01935cded9bfe31d44039d8344d622 163 SUPERFAMILY SSF69765 4 159 2.49E-65 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDG55_08985 dd01935cded9bfe31d44039d8344d622 163 Gene3D G3DSA:3.30.1330.50 2 163 2.2E-68 T 13-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDG55_08985 dd01935cded9bfe31d44039d8344d622 163 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 5 160 35.527 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDG55_08985 dd01935cded9bfe31d44039d8344d622 163 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 6 159 1.3E-66 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDG55_08985 dd01935cded9bfe31d44039d8344d622 163 Pfam PF02542 YgbB family 5 158 6.2E-67 T 13-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 CDG55_03430 d3036d73a7079389a6b0134821349229 443 SUPERFAMILY SSF102735 1 127 9.16E-37 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 CDG55_03430 d3036d73a7079389a6b0134821349229 443 Pfam PF05697 Bacterial trigger factor protein (TF) 1 143 2.2E-40 T 13-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 CDG55_03430 d3036d73a7079389a6b0134821349229 443 Gene3D G3DSA:1.10.3120.10 115 424 6.8E-95 T 13-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 CDG55_03430 d3036d73a7079389a6b0134821349229 443 Hamap MF_00303 Trigger factor [tig]. 1 425 21.67 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CDG55_03430 d3036d73a7079389a6b0134821349229 443 SUPERFAMILY SSF109998 247 436 3.4E-43 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CDG55_03430 d3036d73a7079389a6b0134821349229 443 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 235 8.2E-16 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CDG55_03430 d3036d73a7079389a6b0134821349229 443 Gene3D G3DSA:3.30.70.1050 1 114 9.3E-36 T 13-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 CDG55_03430 d3036d73a7079389a6b0134821349229 443 PIRSF PIRSF003095 1 441 4.4E-126 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CDG55_03430 d3036d73a7079389a6b0134821349229 443 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 419 9.5E-37 T 13-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 CDG55_03430 d3036d73a7079389a6b0134821349229 443 TIGRFAM TIGR00115 tig: trigger factor 12 419 7.1E-140 T 13-10-2018 IPR005215 Trigger factor GO:0015031 CDG55_03430 d3036d73a7079389a6b0134821349229 443 Gene3D G3DSA:3.10.50.40 149 245 6.8E-95 T 13-10-2018 CDG55_03430 d3036d73a7079389a6b0134821349229 443 SUPERFAMILY SSF54534 102 239 2.16E-34 T 13-10-2018 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 10 735 5.4E-301 T 13-10-2018 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 33 469 3.5E-134 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 Gene3D G3DSA:2.120.10.90 501 735 6.8E-16 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 Gene3D G3DSA:3.30.1360.40 239 332 9.7E-174 T 13-10-2018 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 SUPERFAMILY SSF56719 32 484 1.07E-152 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 5 736 32.932 T 13-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 SMART SM00434 12 462 8.1E-219 T 13-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 Gene3D G3DSA:3.90.199.10 33 484 9.7E-174 T 13-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 SUPERFAMILY SSF101904 498 734 1.83E-47 T 13-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 645 688 1.5E-6 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 597 621 0.099 T 13-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 CDG55_14025 04dd11de1cdf6e390af7686eda8e8a99 739 Gene3D G3DSA:1.10.268.10 370 455 9.7E-174 T 13-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDG55_14320 aeb3f6e6665a12ad8f9e7a6dae888867 306 Pfam PF04261 Dyp-type peroxidase family 27 297 3.9E-69 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 CDG55_14320 aeb3f6e6665a12ad8f9e7a6dae888867 306 SUPERFAMILY SSF54909 3 302 2.5E-86 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_14320 aeb3f6e6665a12ad8f9e7a6dae888867 306 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 4 296 8.8E-66 T 13-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 318 496 6.7E-61 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 716 0.0 T 13-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 SUPERFAMILY SSF48179 497 642 1.79E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 Gene3D G3DSA:3.90.226.10 1 314 1.9E-96 T 13-10-2018 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 SUPERFAMILY SSF48179 626 716 4.76E-24 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 Gene3D G3DSA:1.10.1040.50 499 711 9.3E-77 T 13-10-2018 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 210 1.2E-37 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 SUPERFAMILY SSF52096 6 307 1.82E-65 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 717 51.668 T 13-10-2018 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-7292|MetaCyc: PWY-7307|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 SUPERFAMILY SSF51735 314 497 4.12E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 Gene3D G3DSA:3.40.50.720 315 498 1.7E-66 T 13-10-2018 CDG55_13575 3aae9725c31e2339c077d5cc5604d61f 717 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 498 593 1.6E-22 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 Gene3D G3DSA:2.30.40.20 25 76 2.3E-63 T 13-10-2018 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 SUPERFAMILY SSF100879 241 340 3.73E-21 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 Gene3D G3DSA:3.30.70.270 8 167 2.3E-63 T 13-10-2018 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 Pfam PF11799 impB/mucB/samB family C-terminal domain 236 349 1.2E-15 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 Gene3D G3DSA:3.30.1490.100 243 351 1.6E-18 T 13-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 SUPERFAMILY SSF56672 5 237 4.09E-92 T 13-10-2018 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 Pfam PF11798 IMS family HHH motif 172 200 6.6E-6 T 13-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 Gene3D G3DSA:1.10.150.20 169 231 2.1E-18 T 13-10-2018 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 Pfam PF00817 impB/mucB/samB family 11 157 3.1E-52 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDG55_14065 2ebf9c3c2d1d52a4bfb521a2f38b2e17 355 Hamap MF_01113 DNA polymerase IV [dinB]. 5 354 36.719 T 13-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 Gene3D G3DSA:3.40.50.1000 13 193 5.9E-46 T 13-10-2018 IPR023214 HAD superfamily CDG55_08805 85416da70f5c14590da1dae1954e9937 708 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 82 192 6.9E-18 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 190 8.0E-33 T 13-10-2018 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 SUPERFAMILY SSF48179 522 647 8.16E-13 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 509 636 1.9E-9 T 13-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 Gene3D G3DSA:3.40.50.720 247 458 2.2E-11 T 13-10-2018 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 Gene3D G3DSA:1.10.1040.10 523 687 8.6E-24 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 SUPERFAMILY SSF56784 9 222 5.74E-45 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_08805 85416da70f5c14590da1dae1954e9937 708 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 3.3E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 3.3E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 155 175 3.3E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 3.3E-9 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_08805 85416da70f5c14590da1dae1954e9937 708 Gene3D G3DSA:1.10.150.240 23 89 5.9E-46 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CDG55_13825 a4a4ed5a2755608bdb7754d1abdbe6dc 177 SUPERFAMILY SSF109635 42 135 1.57E-34 T 13-10-2018 IPR037187 DksA, N-terminal domain superfamily CDG55_13825 a4a4ed5a2755608bdb7754d1abdbe6dc 177 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 58 166 7.2E-51 T 13-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 CDG55_13825 a4a4ed5a2755608bdb7754d1abdbe6dc 177 SUPERFAMILY SSF57716 137 174 3.28E-10 T 13-10-2018 CDG55_13825 a4a4ed5a2755608bdb7754d1abdbe6dc 177 PRINTS PR00618 DksA/TraR zinc finger signature 140 151 8.7E-5 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CDG55_13825 a4a4ed5a2755608bdb7754d1abdbe6dc 177 PRINTS PR00618 DksA/TraR zinc finger signature 152 164 8.7E-5 T 13-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria CDG55_13825 a4a4ed5a2755608bdb7754d1abdbe6dc 177 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 136 169 1.2E-11 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CDG55_13825 a4a4ed5a2755608bdb7754d1abdbe6dc 177 Gene3D G3DSA:1.20.120.910 47 176 4.1E-36 T 13-10-2018 CDG55_13825 a4a4ed5a2755608bdb7754d1abdbe6dc 177 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 54 176 28.881 T 13-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 Gene3D G3DSA:3.40.50.80 703 845 5.0E-41 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 SUPERFAMILY SSF52218 389 528 3.26E-35 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 SUPERFAMILY SSF63380 547 704 2.27E-17 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 737 746 4.1E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 781 797 4.1E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 649 656 4.1E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 750 761 4.1E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 713 732 4.1E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 804 812 4.1E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 SUPERFAMILY SSF52343 707 845 2.36E-37 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 Pfam PF00175 Oxidoreductase NAD-binding domain 715 819 8.9E-11 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 Pfam PF00258 Flavodoxin 393 520 9.5E-23 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00369 Flavodoxin signature 440 451 2.0E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00369 Flavodoxin signature 471 481 2.0E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 PRINTS PR00369 Flavodoxin signature 392 405 2.0E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 Pfam PF03929 PepSY-associated TM region 7 365 6.3E-65 T 13-10-2018 IPR005625 PepSY-associated TM protein CDG55_11400 1a745ce7b50da48b8550a94c3c2b1d67 845 Gene3D G3DSA:3.40.50.360 362 545 7.8E-38 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 2.4E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 2.4E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 2.4E-10 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 SUPERFAMILY SSF54909 67 150 2.15E-12 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 1.4E-13 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 Gene3D G3DSA:3.30.70.920 64 153 3.5E-14 T 13-10-2018 CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 Gene3D G3DSA:1.10.10.10 1 58 7.3E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 SUPERFAMILY SSF46785 4 59 1.5E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 Pfam PF13404 AsnC-type helix-turn-helix domain 5 46 1.8E-13 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_01470 0fdf22f6aedeb615943320454cbb5caf 154 SMART SM00344 5 114 2.1E-17 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDG55_05770 0376b3e35f97fc339f886446b6e23739 360 Pfam PF07728 AAA domain (dynein-related subfamily) 79 217 1.3E-34 T 13-10-2018 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 CDG55_05770 0376b3e35f97fc339f886446b6e23739 360 SUPERFAMILY SSF52540 57 316 2.28E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05770 0376b3e35f97fc339f886446b6e23739 360 Gene3D G3DSA:3.40.50.300 59 236 2.0E-21 T 13-10-2018 CDG55_08560 a235560d6657e22f3ebce65a471e718e 734 Gene3D G3DSA:3.30.300.20 2 128 5.6E-16 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_08560 a235560d6657e22f3ebce65a471e718e 734 TIGRFAM TIGR03549 TIGR03549: YcaO domain protein 2 728 0.0 T 13-10-2018 IPR019938 YcaO domain protein CDG55_08560 a235560d6657e22f3ebce65a471e718e 734 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 205 540 5.2E-70 T 13-10-2018 IPR003776 YcaO-like domain CDG55_08560 a235560d6657e22f3ebce65a471e718e 734 Pfam PF02566 OsmC-like protein 32 126 3.2E-10 T 13-10-2018 IPR003718 OsmC/Ohr family CDG55_08560 a235560d6657e22f3ebce65a471e718e 734 SUPERFAMILY SSF82784 1 126 2.75E-20 T 13-10-2018 IPR036102 OsmC/Ohr superfamily CDG55_08560 a235560d6657e22f3ebce65a471e718e 734 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 159 551 3.4E-96 T 13-10-2018 IPR003776 YcaO-like domain CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 SUPERFAMILY SSF48019 237 419 3.85E-71 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 46 148 1.4E-16 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 Gene3D G3DSA:3.40.50.300 1 153 3.0E-44 T 13-10-2018 CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 Gene3D G3DSA:1.20.272.10 225 329 1.4E-45 T 13-10-2018 CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 Pfam PF16193 AAA C-terminal domain 181 251 1.4E-21 T 13-10-2018 IPR032423 AAA C-terminal domain CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 SMART SM00382 42 154 1.6E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 Pfam PF12002 MgsA AAA+ ATPase C terminal 252 412 6.1E-66 T 13-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 SUPERFAMILY SSF52540 3 220 8.93E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01430 d539ca9b68a5f4e1dbd388a44e73bf5c 425 Gene3D G3DSA:1.10.3710.10 330 425 3.8E-30 T 13-10-2018 CDG55_06995 17784ca1019e63ad503c24f0aa0e14d3 144 PIRSF PIRSF000714 1 138 1.3E-46 T 13-10-2018 IPR026026 Histidine triad hydrolase, Hint-type CDG55_06995 17784ca1019e63ad503c24f0aa0e14d3 144 Gene3D G3DSA:3.30.428.10 1 136 1.3E-37 T 13-10-2018 IPR036265 HIT-like superfamily CDG55_06995 17784ca1019e63ad503c24f0aa0e14d3 144 Pfam PF01230 HIT domain 10 98 6.7E-12 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CDG55_06995 17784ca1019e63ad503c24f0aa0e14d3 144 SUPERFAMILY SSF54197 1 131 5.1E-30 T 13-10-2018 IPR036265 HIT-like superfamily CDG55_11190 6dac621796630011ab7237648d206f6c 283 Pfam PF01145 SPFH domain / Band 7 family 25 195 7.6E-36 T 13-10-2018 IPR001107 Band 7 domain CDG55_11190 6dac621796630011ab7237648d206f6c 283 Gene3D G3DSA:3.30.479.30 49 181 8.2E-38 T 13-10-2018 CDG55_11190 6dac621796630011ab7237648d206f6c 283 PRINTS PR00721 Stomatin signature 155 173 1.3E-23 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CDG55_11190 6dac621796630011ab7237648d206f6c 283 PRINTS PR00721 Stomatin signature 111 128 1.3E-23 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CDG55_11190 6dac621796630011ab7237648d206f6c 283 PRINTS PR00721 Stomatin signature 174 195 1.3E-23 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CDG55_11190 6dac621796630011ab7237648d206f6c 283 PRINTS PR00721 Stomatin signature 76 97 1.3E-23 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CDG55_11190 6dac621796630011ab7237648d206f6c 283 PRINTS PR00721 Stomatin signature 131 154 1.3E-23 T 13-10-2018 IPR001972 Stomatin family GO:0016020 CDG55_11190 6dac621796630011ab7237648d206f6c 283 SUPERFAMILY SSF117892 52 186 1.23E-37 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily CDG55_11190 6dac621796630011ab7237648d206f6c 283 SMART SM00244 21 179 4.8E-55 T 13-10-2018 IPR001107 Band 7 domain CDG55_06190 6015dbf1d5cd006fbad877a2fac4e4e9 341 Gene3D G3DSA:3.20.20.70 6 249 3.8E-77 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_06190 6015dbf1d5cd006fbad877a2fac4e4e9 341 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 318 3.6E-120 T 13-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 CDG55_06190 6015dbf1d5cd006fbad877a2fac4e4e9 341 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 48.141 T 13-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 CDG55_06190 6015dbf1d5cd006fbad877a2fac4e4e9 341 Gene3D G3DSA:1.10.1200.80 252 322 2.5E-13 T 13-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 CDG55_06190 6015dbf1d5cd006fbad877a2fac4e4e9 341 Pfam PF01207 Dihydrouridine synthase (Dus) 13 317 1.2E-100 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDG55_06190 6015dbf1d5cd006fbad877a2fac4e4e9 341 PIRSF PIRSF006621 1 323 1.1E-103 T 13-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 CDG55_06190 6015dbf1d5cd006fbad877a2fac4e4e9 341 SUPERFAMILY SSF51395 10 318 4.03E-90 T 13-10-2018 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 Gene3D G3DSA:3.30.750.80 420 511 4.0E-32 T 13-10-2018 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 Pfam PF02926 THUMP domain 34 154 4.3E-10 T 13-10-2018 IPR004114 THUMP domain GO:0003723 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 Gene3D G3DSA:3.40.50.150 512 732 3.1E-67 T 13-10-2018 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 SUPERFAMILY SSF53335 162 367 2.14E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 10 732 29.526 T 13-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 Gene3D G3DSA:3.40.50.150 182 387 5.2E-113 T 13-10-2018 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 Gene3D G3DSA:3.30.2130.30 12 269 5.2E-113 T 13-10-2018 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 Pfam PF01170 Putative RNA methylase family UPF0020 175 386 7.6E-35 T 13-10-2018 IPR000241 Putative RNA methylase domain CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 SMART SM00981 70 167 9.0E-8 T 13-10-2018 IPR004114 THUMP domain GO:0003723 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 320 332 9.1E-5 T 13-10-2018 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 208 222 9.1E-5 T 13-10-2018 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 PIRSF PIRSF037618 5 733 1.9E-285 T 13-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 SUPERFAMILY SSF53335 423 731 1.19E-60 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_07475 f2b2176eca8ea066edf6a0a79d5ddd91 734 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 525 689 2.0E-19 T 13-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 CDG55_03305 d85d93d3a8fdd85bcb7ed048ea36d38a 679 Gene3D G3DSA:1.10.1370.40 12 669 4.2E-244 T 13-10-2018 CDG55_03305 d85d93d3a8fdd85bcb7ed048ea36d38a 679 Gene3D G3DSA:1.10.1370.10 140 604 4.2E-244 T 13-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 CDG55_03305 d85d93d3a8fdd85bcb7ed048ea36d38a 679 SUPERFAMILY SSF55486 8 671 9.77E-184 T 13-10-2018 CDG55_03305 d85d93d3a8fdd85bcb7ed048ea36d38a 679 Pfam PF01432 Peptidase family M3 221 670 1.4E-150 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 CDG55_10600 0d2043f1cc3e86dfc285602a1c7a22d4 185 PIRSF PIRSF036893 1 185 5.0E-59 T 13-10-2018 IPR022271 Lipocalin, ApoD type CDG55_10600 0d2043f1cc3e86dfc285602a1c7a22d4 185 Gene3D G3DSA:2.40.128.20 13 183 3.3E-48 T 13-10-2018 IPR012674 Calycin CDG55_10600 0d2043f1cc3e86dfc285602a1c7a22d4 185 SUPERFAMILY SSF50814 27 182 4.36E-42 T 13-10-2018 IPR012674 Calycin CDG55_10600 0d2043f1cc3e86dfc285602a1c7a22d4 185 Pfam PF08212 Lipocalin-like domain 36 182 2.2E-51 T 13-10-2018 IPR000566 Lipocalin/cytosolic fatty-acid binding domain CDG55_10600 0d2043f1cc3e86dfc285602a1c7a22d4 185 PRINTS PR01171 Bacterial lipocalin signature 144 155 5.7E-10 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CDG55_10600 0d2043f1cc3e86dfc285602a1c7a22d4 185 PRINTS PR01171 Bacterial lipocalin signature 129 137 5.7E-10 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CDG55_10600 0d2043f1cc3e86dfc285602a1c7a22d4 185 PRINTS PR01171 Bacterial lipocalin signature 36 50 5.7E-10 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CDG55_10600 0d2043f1cc3e86dfc285602a1c7a22d4 185 PRINTS PR01171 Bacterial lipocalin signature 171 181 5.7E-10 T 13-10-2018 IPR002446 Lipocalin, bacterial GO:0005215 CDG55_09440 7885bf322d4e1982edf894243470babc 389 SUPERFAMILY SSF53383 2 389 2.34E-91 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_09440 7885bf322d4e1982edf894243470babc 389 Gene3D G3DSA:3.40.640.10 42 287 6.2E-122 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_09440 7885bf322d4e1982edf894243470babc 389 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 388 6.3E-200 T 13-10-2018 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 CDG55_09440 7885bf322d4e1982edf894243470babc 389 Gene3D G3DSA:3.90.1150.10 13 380 6.2E-122 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_09440 7885bf322d4e1982edf894243470babc 389 Pfam PF00155 Aminotransferase class I and II 30 385 4.1E-51 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 Gene3D G3DSA:3.40.190.10 93 292 1.8E-40 T 13-10-2018 CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 Pfam PF03466 LysR substrate binding domain 93 292 3.3E-29 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 SUPERFAMILY SSF46785 1 84 3.88E-24 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 SUPERFAMILY SSF53850 93 293 5.97E-28 T 13-10-2018 CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 Gene3D G3DSA:3.40.190.10 163 267 1.8E-40 T 13-10-2018 CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.2E-23 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_12965 5d7abc863687eb9707451129864e7ff9 302 Gene3D G3DSA:1.10.10.10 1 92 5.4E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_11270 24d44593023d55033d7bbab321562266 565 PIRSF PIRSF001294 1 565 5.9E-207 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CDG55_11270 24d44593023d55033d7bbab321562266 565 Pfam PF03814 Potassium-transporting ATPase A subunit 7 561 1.4E-205 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CDG55_11270 24d44593023d55033d7bbab321562266 565 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 7 563 7.7E-159 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CDG55_11270 24d44593023d55033d7bbab321562266 565 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 1 563 27.2 T 13-10-2018 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 SUPERFAMILY SSF50447 271 411 2.01E-35 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_05030 b97aa86efb0be60903ff486a09649117 712 SMART SM00838 610 698 2.8E-56 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Gene3D G3DSA:3.40.50.300 1 299 1.5E-110 T 13-10-2018 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Pfam PF14492 Elongation Factor G, domain II 411 485 4.3E-35 T 13-10-2018 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Hamap MF_00054_B Elongation factor G [fusA]. 6 702 111.304 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 SUPERFAMILY SSF54211 489 609 1.11E-41 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Pfam PF03144 Elongation factor Tu domain 2 331 398 1.1E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 3.7E-29 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 SMART SM00889 487 608 3.6E-62 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Gene3D G3DSA:3.30.230.10 491 697 1.9E-86 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_05030 b97aa86efb0be60903ff486a09649117 712 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 702 0.0 T 13-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Pfam PF03764 Elongation factor G, domain IV 486 607 2.8E-41 T 13-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Gene3D G3DSA:3.30.70.240 614 685 1.9E-86 T 13-10-2018 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 PRINTS PR00315 GTP-binding elongation factor signature 85 95 5.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 PRINTS PR00315 GTP-binding elongation factor signature 137 146 5.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 PRINTS PR00315 GTP-binding elongation factor signature 12 25 5.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 PRINTS PR00315 GTP-binding elongation factor signature 101 112 5.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 PRINTS PR00315 GTP-binding elongation factor signature 58 66 5.0E-15 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 SUPERFAMILY SSF54980 613 701 1.01E-29 T 13-10-2018 IPR035647 EF-G domain III/V-like CDG55_05030 b97aa86efb0be60903ff486a09649117 712 SUPERFAMILY SSF54980 409 486 2.63E-25 T 13-10-2018 IPR035647 EF-G domain III/V-like CDG55_05030 b97aa86efb0be60903ff486a09649117 712 SUPERFAMILY SSF52540 6 288 5.44E-104 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Gene3D G3DSA:3.30.70.870 413 487 2.4E-33 T 13-10-2018 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Pfam PF00679 Elongation factor G C-terminus 610 696 2.8E-31 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Gene3D G3DSA:2.40.30.10 300 412 1.4E-43 T 13-10-2018 CDG55_05030 b97aa86efb0be60903ff486a09649117 712 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 2.4E-64 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_01795 b9719a53f383c3c3fa0425fdace360c1 285 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 30 254 21.897 T 13-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 CDG55_01795 b9719a53f383c3c3fa0425fdace360c1 285 Gene3D G3DSA:3.10.20.310 60 128 4.0E-12 T 13-10-2018 CDG55_01795 b9719a53f383c3c3fa0425fdace360c1 285 Pfam PF03799 Cell division protein FtsQ 133 246 1.7E-16 T 13-10-2018 IPR005548 Cell division protein FtsQ/DivIB CDG55_01795 b9719a53f383c3c3fa0425fdace360c1 285 Gene3D G3DSA:3.40.50.11690 131 260 2.6E-31 T 13-10-2018 CDG55_01795 b9719a53f383c3c3fa0425fdace360c1 285 Pfam PF08478 POTRA domain, FtsQ-type 61 128 2.1E-13 T 13-10-2018 IPR013685 POTRA domain, FtsQ-type CDG55_14350 3d029c69abe98449b337b39e5fea7b32 315 SUPERFAMILY SSF51182 33 301 1.85E-72 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CDG55_14350 3d029c69abe98449b337b39e5fea7b32 315 Gene3D G3DSA:2.60.120.10 158 259 1.3E-63 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_14350 3d029c69abe98449b337b39e5fea7b32 315 Gene3D G3DSA:2.60.120.10 34 284 1.3E-63 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_14350 3d029c69abe98449b337b39e5fea7b32 315 Pfam PF02678 Pirin 40 138 1.0E-28 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 CDG55_14350 3d029c69abe98449b337b39e5fea7b32 315 Pfam PF05726 Pirin C-terminal cupin domain 190 286 6.1E-21 T 13-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 CDG55_14350 3d029c69abe98449b337b39e5fea7b32 315 PIRSF PIRSF006232 20 300 2.5E-76 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 CDG55_02620 68cd89867d3604af570a79cd633955ce 366 Pfam PF03275 UDP-galactopyranose mutase 147 345 1.9E-80 T 13-10-2018 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CDG55_02620 68cd89867d3604af570a79cd633955ce 366 SUPERFAMILY SSF51971 3 364 3.3E-56 T 13-10-2018 CDG55_02620 68cd89867d3604af570a79cd633955ce 366 SUPERFAMILY SSF54373 247 312 4.12E-19 T 13-10-2018 CDG55_02620 68cd89867d3604af570a79cd633955ce 366 Gene3D G3DSA:3.40.50.720 302 366 3.2E-20 T 13-10-2018 CDG55_02620 68cd89867d3604af570a79cd633955ce 366 Gene3D G3DSA:3.40.50.720 2 89 2.9E-32 T 13-10-2018 CDG55_02620 68cd89867d3604af570a79cd633955ce 366 Gene3D G3DSA:3.40.50.720 151 297 1.9E-32 T 13-10-2018 CDG55_02620 68cd89867d3604af570a79cd633955ce 366 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 4 363 6.3E-115 T 13-10-2018 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CDG55_02620 68cd89867d3604af570a79cd633955ce 366 Pfam PF13450 NAD(P)-binding Rossmann-like domain 7 73 7.9E-18 T 13-10-2018 CDG55_09570 24ff69c13b4af0d1c67fcf71a1f84935 275 SUPERFAMILY SSF51735 1 243 6.12E-51 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09570 24ff69c13b4af0d1c67fcf71a1f84935 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 2.2E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09570 24ff69c13b4af0d1c67fcf71a1f84935 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 2.2E-5 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09570 24ff69c13b4af0d1c67fcf71a1f84935 275 Pfam PF00106 short chain dehydrogenase 8 203 8.1E-34 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09570 24ff69c13b4af0d1c67fcf71a1f84935 275 Gene3D G3DSA:3.40.50.720 1 275 3.0E-68 T 13-10-2018 CDG55_09570 24ff69c13b4af0d1c67fcf71a1f84935 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 2.9E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09570 24ff69c13b4af0d1c67fcf71a1f84935 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.9E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09570 24ff69c13b4af0d1c67fcf71a1f84935 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 89 100 2.9E-15 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_00855 82680aa031fdcb2c523861ce0b0d20cf 203 Pfam PF08849 Putative inner membrane protein (DUF1819) 6 187 1.6E-44 T 13-10-2018 IPR014948 Protein of unknown function DUF1819, putative inner membrane CDG55_00855 82680aa031fdcb2c523861ce0b0d20cf 203 Gene3D G3DSA:1.10.3540.10 1 203 6.8E-65 T 13-10-2018 CDG55_08090 94f230eb5818bd4a02d32d4af3a53084 257 Gene3D G3DSA:3.20.20.140 1 257 2.4E-86 T 13-10-2018 CDG55_08090 94f230eb5818bd4a02d32d4af3a53084 257 SUPERFAMILY SSF51556 2 256 3.92E-82 T 13-10-2018 IPR032466 Metal-dependent hydrolase CDG55_08090 94f230eb5818bd4a02d32d4af3a53084 257 PIRSF PIRSF005902 1 257 1.2E-73 T 13-10-2018 IPR001130 TatD family GO:0016788 CDG55_08090 94f230eb5818bd4a02d32d4af3a53084 257 Pfam PF01026 TatD related DNase 3 254 9.8E-72 T 13-10-2018 IPR001130 TatD family GO:0016788 CDG55_08090 94f230eb5818bd4a02d32d4af3a53084 257 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 255 3.9E-83 T 13-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 Pfam PF01084 Ribosomal protein S18 19 68 1.3E-23 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.834 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 SUPERFAMILY SSF46911 3 74 1.57E-28 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 3.6E-35 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 9.1E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 9.1E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 9.1E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 9.1E-18 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 Gene3D G3DSA:4.10.640.10 1 75 7.4E-27 T 13-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09720 574f8a5447230ac47484967c0f9aa34a 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 20 71 8.0E-23 T 13-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03810 2c2496761f002546cef47c54502e1b25 257 Gene3D G3DSA:3.40.50.720 2 232 1.9E-56 T 13-10-2018 CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 196 216 5.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 5.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 5.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 5.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 5.5E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 SUPERFAMILY SSF51735 4 220 1.26E-58 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_03810 2c2496761f002546cef47c54502e1b25 257 Pfam PF00106 short chain dehydrogenase 5 190 3.8E-47 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03810 2c2496761f002546cef47c54502e1b25 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.4E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 Gene3D G3DSA:3.20.20.70 495 1183 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 Pfam PF00310 Glutamine amidotransferases class-II 25 438 1.4E-161 T 13-10-2018 IPR017932 Glutamine amidotransferase type 2 domain CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 SUPERFAMILY SSF56235 25 441 9.46E-141 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 Pfam PF01645 Conserved region in glutamate synthase 807 1168 1.0E-147 T 13-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 SUPERFAMILY SSF51395 456 1201 9.62E-246 T 13-10-2018 CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 Pfam PF01493 GXGXG motif 1249 1435 6.6E-75 T 13-10-2018 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0016491|GO:0055114 CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 SUPERFAMILY SSF69336 1224 1479 1.31E-85 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 Gene3D G3DSA:3.60.20.10 25 557 0.0 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 Gene3D G3DSA:2.160.20.60 1222 1492 1.4E-96 T 13-10-2018 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily GO:0016491|GO:0055114 CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 Gene3D G3DSA:3.20.20.70 443 805 0.0 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_02505 a881d51dbf5dbfe3e827095d79e23a80 1494 Pfam PF04898 Glutamate synthase central domain 469 750 9.7E-105 T 13-10-2018 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 CDG55_05215 301af4c6f6533a87cb2479965e4a312e 373 Pfam PF01266 FAD dependent oxidoreductase 2 346 4.5E-61 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDG55_05215 301af4c6f6533a87cb2479965e4a312e 373 SUPERFAMILY SSF51905 1 365 1.19E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05215 301af4c6f6533a87cb2479965e4a312e 373 Gene3D G3DSA:3.30.9.10 88 307 2.1E-77 T 13-10-2018 CDG55_05215 301af4c6f6533a87cb2479965e4a312e 373 Gene3D G3DSA:3.50.50.60 4 347 2.1E-77 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05215 301af4c6f6533a87cb2479965e4a312e 373 SUPERFAMILY SSF54373 221 306 4.97E-20 T 13-10-2018 CDG55_05215 301af4c6f6533a87cb2479965e4a312e 373 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 3 351 4.3E-77 T 13-10-2018 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 KEGG: 00730+1.4.3.19|MetaCyc: PWY-7396|MetaCyc: PWY-7806 CDG55_14495 137cdcfa041d7afbbc325bcd0b1855df 322 Gene3D G3DSA:3.100.10.20 11 109 2.9E-48 T 13-10-2018 CDG55_14495 137cdcfa041d7afbbc325bcd0b1855df 322 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 16 319 15.966 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CDG55_14495 137cdcfa041d7afbbc325bcd0b1855df 322 TIGRFAM TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST 12 311 7.2E-143 T 13-10-2018 IPR019857 CRISPR-associated protein Cas1, YPEST subtype GO:0004520|GO:0043571|GO:0046872 CDG55_14495 137cdcfa041d7afbbc325bcd0b1855df 322 Pfam PF01867 CRISPR associated protein Cas1 21 289 8.7E-12 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CDG55_14495 137cdcfa041d7afbbc325bcd0b1855df 322 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 19 289 4.6E-61 T 13-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 CDG55_14495 137cdcfa041d7afbbc325bcd0b1855df 322 Gene3D G3DSA:1.20.120.920 110 320 6.3E-70 T 13-10-2018 CDG55_05685 bc4c1e22dea576599f30839cd8cd2226 456 SUPERFAMILY SSF53383 24 448 1.42E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_05685 bc4c1e22dea576599f30839cd8cd2226 456 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 15 455 5.5E-252 T 13-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 CDG55_05685 bc4c1e22dea576599f30839cd8cd2226 456 Pfam PF00202 Aminotransferase class-III 34 447 3.2E-95 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_05685 bc4c1e22dea576599f30839cd8cd2226 456 Gene3D G3DSA:3.90.1150.10 23 441 1.7E-133 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_05685 bc4c1e22dea576599f30839cd8cd2226 456 Gene3D G3DSA:3.40.640.10 71 338 1.7E-133 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 Pfam PF09278 MerR, DNA binding 44 108 5.6E-22 T 13-10-2018 IPR015358 Transcription regulator MerR, DNA binding CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 SUPERFAMILY SSF46955 1 126 3.44E-41 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 7.8E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 7.8E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 7.8E-12 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 Gene3D G3DSA:1.10.1660.10 1 125 7.2E-38 T 13-10-2018 CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 SMART SM00422 1 70 9.7E-32 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 2.3E-51 T 13-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 CDG55_00945 d0cee64011268bdf012c21180cd342bf 152 Pfam PF00376 MerR family regulatory protein 2 39 1.0E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01670 95dd0da6e8b16fec8d9a9467ca622ca8 275 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 34 275 4.3E-112 T 13-10-2018 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD CDG55_01670 95dd0da6e8b16fec8d9a9467ca622ca8 275 Pfam PF00005 ABC transporter 50 205 4.9E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_01670 95dd0da6e8b16fec8d9a9467ca622ca8 275 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 253 274 4.4E-6 T 13-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CDG55_01670 95dd0da6e8b16fec8d9a9467ca622ca8 275 Gene3D G3DSA:3.40.50.300 33 275 6.5E-55 T 13-10-2018 CDG55_01670 95dd0da6e8b16fec8d9a9467ca622ca8 275 SUPERFAMILY SSF52540 35 273 1.3E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_02130 26a09b3f63765299f6dc2c211aa8316f 290 Pfam PF06114 IrrE N-terminal-like domain 50 157 6.2E-14 T 13-10-2018 IPR010359 IrrE N-terminal-like domain CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 1.7E-94 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 SUPERFAMILY SSF54821 108 206 1.57E-40 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.162 T 13-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 2.0E-41 T 13-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 Gene3D G3DSA:3.30.300.20 18 107 1.0E-25 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 Gene3D G3DSA:3.30.1140.32 108 208 3.7E-45 T 13-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 SMART SM00322 60 125 5.8E-6 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 SUPERFAMILY SSF54814 2 106 2.12E-35 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CDG55_03140 8f49e0a545b504cff66635b46e474a96 250 Pfam PF07650 KH domain 39 110 3.2E-17 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_10170 44825a1125acf9d903b3b0bbac6a07f4 236 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 18 236 1.1E-102 T 13-10-2018 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE CDG55_10170 44825a1125acf9d903b3b0bbac6a07f4 236 Gene3D G3DSA:3.20.20.70 18 230 3.4E-35 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_10170 44825a1125acf9d903b3b0bbac6a07f4 236 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 18 233 35.513 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CDG55_10170 44825a1125acf9d903b3b0bbac6a07f4 236 PIRSF PIRSF000370 16 236 1.7E-64 T 13-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 CDG55_10170 44825a1125acf9d903b3b0bbac6a07f4 236 Pfam PF13394 4Fe-4S single cluster domain 39 120 9.2E-11 T 13-10-2018 CDG55_10170 44825a1125acf9d903b3b0bbac6a07f4 236 SUPERFAMILY SSF102114 39 119 4.19E-16 T 13-10-2018 CDG55_10170 44825a1125acf9d903b3b0bbac6a07f4 236 Pfam PF04055 Radical SAM superfamily 42 168 3.1E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 Gene3D G3DSA:3.40.50.300 74 348 1.4E-112 T 13-10-2018 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 Gene3D G3DSA:1.10.1140.10 349 464 1.0E-57 T 13-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 SMART SM00382 140 331 3.2E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 346 1.5E-62 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 SUPERFAMILY SSF47917 349 463 2.62E-53 T 13-10-2018 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 Gene3D G3DSA:2.40.10.170 1 73 3.3E-30 T 13-10-2018 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 464 56.938 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 464 2.9E-253 T 13-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 SUPERFAMILY SSF52540 75 352 4.09E-91 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 SUPERFAMILY SSF50615 2 73 4.19E-25 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_14260 e20a8462b693bb92bd96d926cf9be3a2 464 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 5.2E-20 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 211 332 2.4E-31 T 13-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 SUPERFAMILY SSF56176 9 196 2.94E-36 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 Gene3D G3DSA:3.90.78.10 223 343 1.6E-41 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 Pfam PF01565 FAD binding domain 22 146 9.5E-23 T 13-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 329 6.0E-62 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 344 74.2 T 13-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 Gene3D G3DSA:3.30.43.10 1 72 1.3E-18 T 13-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 Gene3D G3DSA:3.30.465.10 73 222 1.7E-49 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CDG55_09140 3525b3d4eaddb1eed45027602ecaeed3 344 SUPERFAMILY SSF56194 208 337 6.8E-45 T 13-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_07385 f4fa24433318bc6bf598764c18f18369 72 PIRSF PIRSF002599 1 72 1.3E-23 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CDG55_07385 f4fa24433318bc6bf598764c18f18369 72 SUPERFAMILY SSF50249 3 68 1.81E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_07385 f4fa24433318bc6bf598764c18f18369 72 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 2.8E-27 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07385 f4fa24433318bc6bf598764c18f18369 72 SMART SM00357 6 69 2.6E-27 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CDG55_07385 f4fa24433318bc6bf598764c18f18369 72 Gene3D G3DSA:2.40.50.140 4 68 1.1E-27 T 13-10-2018 CDG55_07385 f4fa24433318bc6bf598764c18f18369 72 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07385 f4fa24433318bc6bf598764c18f18369 72 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07385 f4fa24433318bc6bf598764c18f18369 72 PRINTS PR00050 Cold shock protein signature 7 22 1.1E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_06795 a1d2af3217f2285d85cd5c331b1785a7 552 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 3 135 1.2E-37 T 13-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 CDG55_06795 a1d2af3217f2285d85cd5c331b1785a7 552 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 151 273 1.1E-10 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_06795 a1d2af3217f2285d85cd5c331b1785a7 552 SUPERFAMILY SSF52799 3 108 5.12E-7 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CDG55_06795 a1d2af3217f2285d85cd5c331b1785a7 552 Gene3D G3DSA:3.50.50.60 264 404 1.8E-96 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06795 a1d2af3217f2285d85cd5c331b1785a7 552 SUPERFAMILY SSF51905 149 473 5.35E-31 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06795 a1d2af3217f2285d85cd5c331b1785a7 552 Gene3D G3DSA:3.90.190.10 1 140 6.2E-39 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CDG55_06795 a1d2af3217f2285d85cd5c331b1785a7 552 Gene3D G3DSA:3.50.50.60 152 468 1.8E-96 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06795 a1d2af3217f2285d85cd5c331b1785a7 552 Pfam PF04273 Putative phosphatase (DUF442) 3 111 1.0E-31 T 13-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 7 336 3.4E-164 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 Pfam PF02780 Transketolase, C-terminal domain 551 653 3.2E-10 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 Gene3D G3DSA:3.40.50.970 6 328 4.7E-133 T 13-10-2018 CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 Pfam PF02779 Transketolase, pyrimidine binding domain 356 526 1.4E-46 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 TIGRFAM TIGR00232 tktlase_bact: transketolase 10 661 1.6E-295 T 13-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 SMART SM00861 357 527 2.0E-70 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 Gene3D G3DSA:3.40.50.970 329 539 1.6E-83 T 13-10-2018 CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 Gene3D G3DSA:3.40.50.920 540 661 2.5E-36 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 SUPERFAMILY SSF52922 534 661 7.42E-37 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 SUPERFAMILY SSF52518 7 322 2.41E-121 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_07700 9d39f879e3e8661c40f1101f9f24531e 662 SUPERFAMILY SSF52518 337 527 9.64E-68 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_04170 64df30e61cb3b36ef3e29c416d2d4f3f 281 SUPERFAMILY SSF53474 1 273 3.99E-76 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_04170 64df30e61cb3b36ef3e29c416d2d4f3f 281 Pfam PF00756 Putative esterase 21 270 3.3E-48 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CDG55_04170 64df30e61cb3b36ef3e29c416d2d4f3f 281 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 3 275 9.2E-119 T 13-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 CDG55_04170 64df30e61cb3b36ef3e29c416d2d4f3f 281 Gene3D G3DSA:3.40.50.1820 1 278 5.1E-85 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_14645 4bd2ecc1011caf452df14eae75ab89a0 221 SUPERFAMILY SSF55120 11 217 6.24E-59 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_14645 4bd2ecc1011caf452df14eae75ab89a0 221 Pfam PF00849 RNA pseudouridylate synthase 24 171 5.7E-28 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_14645 4bd2ecc1011caf452df14eae75ab89a0 221 Gene3D G3DSA:3.30.2350.10 8 219 3.4E-65 T 13-10-2018 CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 Gene3D G3DSA:1.25.40.10 48 334 8.3E-39 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 SMART SM00671 213 249 7.1E-10 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 SMART SM00671 122 164 8.1 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 SMART SM00671 286 321 4.7E-7 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 SMART SM00671 250 285 3.6E-7 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 Pfam PF08238 Sel1 repeat 252 281 0.0019 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 Pfam PF08238 Sel1 repeat 286 321 1.5E-4 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 Pfam PF08238 Sel1 repeat 213 249 1.5E-8 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 Pfam PF08238 Sel1 repeat 123 164 0.025 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_06135 9e320df00e551b3632f1984f8ea2c575 335 SUPERFAMILY SSF81901 193 325 8.24E-29 T 13-10-2018 CDG55_04840 e8826be23e94752d51b12435114a3b78 349 Pfam PF00849 RNA pseudouridylate synthase 122 271 2.5E-28 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_04840 e8826be23e94752d51b12435114a3b78 349 Pfam PF01479 S4 domain 63 93 3.4E-6 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_04840 e8826be23e94752d51b12435114a3b78 349 SUPERFAMILY SSF55120 108 345 5.76E-74 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_04840 e8826be23e94752d51b12435114a3b78 349 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 45 343 8.0E-90 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_04840 e8826be23e94752d51b12435114a3b78 349 SUPERFAMILY SSF55174 46 134 4.21E-9 T 13-10-2018 CDG55_04840 e8826be23e94752d51b12435114a3b78 349 Gene3D G3DSA:3.10.290.10 33 105 2.6E-16 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CDG55_04840 e8826be23e94752d51b12435114a3b78 349 Gene3D G3DSA:3.30.2350.10 114 346 3.8E-67 T 13-10-2018 CDG55_04840 e8826be23e94752d51b12435114a3b78 349 SMART SM00363 49 113 0.0011 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_11605 511d43d522c641017749a17b00dead48 170 Pfam PF12019 Type II transport protein GspH 50 160 4.0E-7 T 13-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 CDG55_11605 511d43d522c641017749a17b00dead48 170 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 25 2.8E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_11605 511d43d522c641017749a17b00dead48 170 SUPERFAMILY SSF54523 7 145 7.85E-13 T 13-10-2018 CDG55_11605 511d43d522c641017749a17b00dead48 170 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 23 3.3E-6 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_11605 511d43d522c641017749a17b00dead48 170 Gene3D G3DSA:3.30.700.10 7 151 1.0E-6 T 13-10-2018 CDG55_10775 5384c41542f0125eb07931ed171a5c82 539 Pfam PF12450 von Willebrand factor 69 161 3.4E-38 T 13-10-2018 IPR022156 Uncharacterised protein YfbK, N-terminal CDG55_10775 5384c41542f0125eb07931ed171a5c82 539 SUPERFAMILY SSF53300 175 351 1.44E-36 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CDG55_10775 5384c41542f0125eb07931ed171a5c82 539 Pfam PF00092 von Willebrand factor type A domain 178 348 3.0E-20 T 13-10-2018 IPR002035 von Willebrand factor, type A CDG55_10775 5384c41542f0125eb07931ed171a5c82 539 Pfam PF12034 Domain of unknown function (DUF3520) 354 534 1.3E-70 T 13-10-2018 IPR021908 Protein of unknown function DUF3520 CDG55_10775 5384c41542f0125eb07931ed171a5c82 539 Gene3D G3DSA:3.40.50.410 177 355 3.8E-33 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CDG55_10775 5384c41542f0125eb07931ed171a5c82 539 SMART SM00327 176 352 5.0E-26 T 13-10-2018 IPR002035 von Willebrand factor, type A CDG55_11215 20ee38adb48279c21c20d3b5dc23bff9 452 PIRSF PIRSF006060 2 451 4.3E-78 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CDG55_11215 20ee38adb48279c21c20d3b5dc23bff9 452 Pfam PF00324 Amino acid permease 16 420 4.5E-110 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CDG55_11215 20ee38adb48279c21c20d3b5dc23bff9 452 Gene3D G3DSA:1.20.1740.10 8 452 3.6E-66 T 13-10-2018 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 SUPERFAMILY SSF53738 162 258 5.89E-26 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 SUPERFAMILY SSF53738 263 363 3.1E-21 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 Gene3D G3DSA:3.40.120.10 259 376 5.1E-30 T 13-10-2018 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 7.2E-20 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 7.2E-20 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 97 111 7.2E-20 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 7.2E-20 T 13-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 SUPERFAMILY SSF53738 11 129 1.33E-29 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 Gene3D G3DSA:3.40.120.10 1 147 9.2E-37 T 13-10-2018 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 Gene3D G3DSA:3.30.310.50 379 469 6.6E-17 T 13-10-2018 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 Gene3D G3DSA:3.40.120.10 177 254 4.5E-25 T 13-10-2018 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 162 256 2.0E-24 T 13-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 11 130 3.3E-29 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 376 1.8E-17 T 13-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_05125 53a513a731d54a0e6c95de3395ad63d9 473 SUPERFAMILY SSF55957 377 464 3.49E-13 T 13-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_03420 44d8fcfa62d30de4e63af71e93cb75e1 230 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 4 230 45.53 T 13-10-2018 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 CDG55_03420 44d8fcfa62d30de4e63af71e93cb75e1 230 Gene3D G3DSA:4.10.860.20 183 230 3.0E-21 T 13-10-2018 CDG55_03420 44d8fcfa62d30de4e63af71e93cb75e1 230 Gene3D G3DSA:2.60.120.620 2 181 2.3E-44 T 13-10-2018 CDG55_03420 44d8fcfa62d30de4e63af71e93cb75e1 230 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 87 179 1.5E-12 T 13-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 CDG55_03420 44d8fcfa62d30de4e63af71e93cb75e1 230 SMART SM00702 3 180 3.8E-22 T 13-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 CDG55_03420 44d8fcfa62d30de4e63af71e93cb75e1 230 SUPERFAMILY SSF51197 7 191 3.41E-7 T 13-10-2018 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 Gene3D G3DSA:2.40.30.10 35 135 5.7E-17 T 13-10-2018 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 SUPERFAMILY SSF52343 123 246 3.01E-24 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 Gene3D G3DSA:3.10.20.30 265 355 1.3E-14 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 Pfam PF00970 Oxidoreductase FAD-binding domain 42 134 5.8E-9 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 280 336 2.5E-4 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 Gene3D G3DSA:3.40.50.80 136 264 1.7E-23 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 Pfam PF00175 Oxidoreductase NAD-binding domain 145 244 5.1E-12 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 PRINTS PR00409 Phthalate dioxygenase reductase family signature 230 238 4.1E-6 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 PRINTS PR00409 Phthalate dioxygenase reductase family signature 144 163 4.1E-6 T 13-10-2018 IPR000951 Phthalate dioxygenase reductase GO:0016491 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 SUPERFAMILY SSF63380 30 134 2.51E-19 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 144 163 9.9E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 109 118 9.9E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 230 238 9.9E-5 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_05670 8bf8adf4724f9d70439fae8b83ae8f91 355 SUPERFAMILY SSF54292 253 355 1.11E-15 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CDG55_05270 476ee399b0f1cbfb3665985caa9d042c 64 Pfam PF12728 Helix-turn-helix domain 9 57 1.1E-6 T 13-10-2018 CDG55_05635 3fbefd1ea70fb08a138efb368fa60094 433 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 6 431 105.505 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 CDG55_05635 3fbefd1ea70fb08a138efb368fa60094 433 Gene3D G3DSA:3.40.640.10 72 322 6.1E-176 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_05635 3fbefd1ea70fb08a138efb368fa60094 433 Gene3D G3DSA:3.90.1150.10 10 424 6.1E-176 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_05635 3fbefd1ea70fb08a138efb368fa60094 433 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 6 430 1.2E-188 T 13-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 CDG55_05635 3fbefd1ea70fb08a138efb368fa60094 433 SUPERFAMILY SSF53383 5 430 3.5E-129 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_05635 3fbefd1ea70fb08a138efb368fa60094 433 Pfam PF00202 Aminotransferase class-III 35 401 1.2E-74 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_00205 dd10397bd7235425a889b0ec41c39ea8 1064 SUPERFAMILY SSF56349 588 800 1.97E-14 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_00205 dd10397bd7235425a889b0ec41c39ea8 1064 Pfam PF00589 Phage integrase family 589 731 8.8E-8 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Pfam PF06421 GTP-binding protein LepA C-terminus 496 602 4.9E-49 T 13-10-2018 IPR013842 GTP-binding protein LepA, C-terminal CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 SMART SM00838 407 492 0.0019 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Gene3D G3DSA:3.30.70.870 295 376 4.0E-34 T 13-10-2018 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Gene3D G3DSA:3.30.70.2570 488 562 1.7E-31 T 13-10-2018 IPR038363 LepA, C-terminal domain superfamily CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Gene3D G3DSA:3.40.50.300 8 194 3.3E-68 T 13-10-2018 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 SUPERFAMILY SSF54980 301 379 1.01E-17 T 13-10-2018 IPR035647 EF-G domain III/V-like CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Hamap MF_00071 Elongation factor 4 [lepA]. 1 605 290.344 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Pfam PF03144 Elongation factor Tu domain 2 214 284 3.4E-11 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 163 1.2E-17 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Gene3D G3DSA:3.30.70.3380 377 487 1.7E-38 T 13-10-2018 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 TIGRFAM TIGR01393 lepA: elongation factor 4 11 604 1.2E-286 T 13-10-2018 IPR006297 Elongation factor 4 GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 PRINTS PR00315 GTP-binding elongation factor signature 135 144 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 PRINTS PR00315 GTP-binding elongation factor signature 15 28 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 PRINTS PR00315 GTP-binding elongation factor signature 99 110 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 PRINTS PR00315 GTP-binding elongation factor signature 83 93 1.4E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Pfam PF00009 Elongation factor Tu GTP binding domain 11 190 7.1E-51 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 SUPERFAMILY SSF52540 6 238 4.94E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Pfam PF00679 Elongation factor G C-terminus 408 493 6.3E-21 T 13-10-2018 IPR000640 Elongation factor EFG, domain V-like CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 SUPERFAMILY SSF54980 408 502 3.21E-25 T 13-10-2018 IPR035647 EF-G domain III/V-like CDG55_10095 e5fd9eefe53845014c5efcde2b66a548 605 Gene3D G3DSA:2.40.30.10 195 293 1.4E-31 T 13-10-2018 CDG55_04620 edd1562dc0157cf42f4b324788c6a50f 192 PIRSF PIRSF000239 36 192 2.0E-31 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_04620 edd1562dc0157cf42f4b324788c6a50f 192 SUPERFAMILY SSF52833 42 189 2.89E-47 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_04620 edd1562dc0157cf42f4b324788c6a50f 192 Gene3D G3DSA:3.40.30.10 39 190 7.6E-46 T 13-10-2018 CDG55_04620 edd1562dc0157cf42f4b324788c6a50f 192 Pfam PF00578 AhpC/TSA family 43 167 6.0E-38 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_13190 3cef11399940324960c89e694f1e500c 746 Gene3D G3DSA:3.40.50.300 202 393 1.9E-75 T 13-10-2018 CDG55_13190 3cef11399940324960c89e694f1e500c 746 SUPERFAMILY SSF52540 474 629 9.58E-23 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13190 3cef11399940324960c89e694f1e500c 746 Gene3D G3DSA:1.10.8.630 17 129 6.1E-30 T 13-10-2018 CDG55_13190 3cef11399940324960c89e694f1e500c 746 Hamap MF_00983 Probable primosomal protein N' [priA]. 20 745 24.002 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CDG55_13190 3cef11399940324960c89e694f1e500c 746 Pfam PF00270 DEAD/DEAH box helicase 215 376 2.0E-16 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDG55_13190 3cef11399940324960c89e694f1e500c 746 Pfam PF00271 Helicase conserved C-terminal domain 537 603 1.0E-4 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_13190 3cef11399940324960c89e694f1e500c 746 SMART SM00490 507 604 2.3E-5 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_13190 3cef11399940324960c89e694f1e500c 746 TIGRFAM TIGR00595 priA: primosomal protein N' 235 742 6.3E-182 T 13-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 CDG55_13190 3cef11399940324960c89e694f1e500c 746 SUPERFAMILY SSF52540 210 393 4.11E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13190 3cef11399940324960c89e694f1e500c 746 SMART SM00487 209 405 2.0E-24 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 Gene3D G3DSA:2.40.500.20 88 204 6.5E-42 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 PIRSF PIRSF000349 1 206 2.4E-82 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 PRINTS PR01703 Manganese superoxide dismutase signature 7 18 2.9E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 2.9E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 2.9E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 PRINTS PR01703 Manganese superoxide dismutase signature 71 84 2.9E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 2.9E-22 T 13-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 5 88 8.5E-33 T 13-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 Gene3D G3DSA:1.10.287.990 21 87 1.3E-25 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 95 197 4.1E-37 T 13-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 SUPERFAMILY SSF54719 90 199 6.42E-43 T 13-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_10040 89c5c3a07bee3f605d413b45cd66f8d7 208 SUPERFAMILY SSF46609 3 89 1.7E-35 T 13-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 CDG55_02735 07d63553c2050bb7622902ca8f4f7f74 246 Gene3D G3DSA:1.10.1270.20 170 246 2.1E-30 T 13-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDG55_02735 07d63553c2050bb7622902ca8f4f7f74 246 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 225 8.6E-56 T 13-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDG55_02735 07d63553c2050bb7622902ca8f4f7f74 246 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 2 238 2.4E-90 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDG55_02735 07d63553c2050bb7622902ca8f4f7f74 246 Gene3D G3DSA:3.40.1280.10 1 169 2.9E-63 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDG55_02735 07d63553c2050bb7622902ca8f4f7f74 246 SUPERFAMILY SSF75217 3 243 4.19E-96 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CDG55_02735 07d63553c2050bb7622902ca8f4f7f74 246 PIRSF PIRSF000386 1 246 4.1E-91 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDG55_02735 07d63553c2050bb7622902ca8f4f7f74 246 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 246 102.603 T 13-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 Gene3D G3DSA:3.30.1550.10 2 72 5.9E-36 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 1.0E-16 T 13-10-2018 CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 SUPERFAMILY SSF54747 3 73 4.97E-31 T 13-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 31.068 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 SUPERFAMILY SSF46906 68 141 3.01E-25 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 3.1E-23 T 13-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 2.1E-31 T 13-10-2018 IPR020784 Ribosomal protein L11, N-terminal CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.7E-65 T 13-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 Gene3D G3DSA:1.10.10.250 73 141 6.6E-27 T 13-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CDG55_13680 9172855ecee8f2191a507a3f6b98ca4d 142 SMART SM00649 9 141 2.3E-84 T 13-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 SUPERFAMILY SSF48592 7 521 8.24E-78 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 Gene3D G3DSA:3.50.7.10 192 372 2.7E-239 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 8.3E-95 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 1.1E-253 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 SUPERFAMILY SSF54849 138 204 1.65E-21 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 Gene3D G3DSA:3.30.260.10 136 410 2.7E-239 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 SUPERFAMILY SSF52029 184 376 4.34E-84 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 543 41.102 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_05430 29505f52f6313e16a875d0c38dc0bf0b 544 Gene3D G3DSA:1.10.560.10 8 521 2.7E-239 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily CDG55_14100 194ac27c15ec66acd983fc5dd151f455 177 Pfam PF10881 Protein of unknown function (DUF2726) 36 142 4.7E-8 T 13-10-2018 IPR024402 Domain of unknown function DUF2726 CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 Pfam PF13522 Glutamine amidotransferase domain 62 182 3.0E-22 T 13-10-2018 CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 Gene3D G3DSA:3.40.50.10490 247 611 5.5E-143 T 13-10-2018 CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 SUPERFAMILY SSF56235 2 222 6.69E-73 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 612 40.29 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 612 3.7E-254 T 13-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 Gene3D G3DSA:3.60.20.10 2 238 1.8E-78 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 Gene3D G3DSA:3.40.50.10490 450 597 5.5E-143 T 13-10-2018 CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 SUPERFAMILY SSF53697 244 612 4.92E-108 T 13-10-2018 CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 Pfam PF01380 SIS domain 465 594 9.1E-29 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CDG55_01480 55a1fa5e62cd4e3b1d53edee347b542e 612 Pfam PF01380 SIS domain 291 420 4.2E-29 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CDG55_02780 09f86a7dae08def2b2a93708950d6be8 410 SUPERFAMILY SSF55021 335 409 7.2E-19 T 13-10-2018 CDG55_02780 09f86a7dae08def2b2a93708950d6be8 410 SUPERFAMILY SSF51735 109 296 8.52E-57 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_02780 09f86a7dae08def2b2a93708950d6be8 410 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 120 295 2.3E-52 T 13-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 CDG55_02780 09f86a7dae08def2b2a93708950d6be8 410 Gene3D G3DSA:3.30.70.260 329 409 1.2E-30 T 13-10-2018 CDG55_02780 09f86a7dae08def2b2a93708950d6be8 410 SUPERFAMILY SSF52283 9 137 4.89E-50 T 13-10-2018 CDG55_02780 09f86a7dae08def2b2a93708950d6be8 410 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 327 4.5E-36 T 13-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 CDG55_02780 09f86a7dae08def2b2a93708950d6be8 410 Gene3D G3DSA:3.40.50.720 15 313 1.3E-108 T 13-10-2018 CDG55_02780 09f86a7dae08def2b2a93708950d6be8 410 Gene3D G3DSA:3.40.50.720 110 298 1.3E-108 T 13-10-2018 CDG55_14180 ed5587046d693cd6f14714267ad41a7e 571 Gene3D G3DSA:1.20.1730.10 55 569 1.3E-62 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CDG55_14180 ed5587046d693cd6f14714267ad41a7e 571 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 68 489 5.4E-63 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CDG55_14180 ed5587046d693cd6f14714267ad41a7e 571 Pfam PF00474 Sodium:solute symporter family 68 489 3.8E-113 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CDG55_01320 2fab6b088aa9eac045d7f8a149cb9797 609 SUPERFAMILY SSF52016 421 607 3.3E-60 T 13-10-2018 CDG55_01320 2fab6b088aa9eac045d7f8a149cb9797 609 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 608 44.676 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDG55_01320 2fab6b088aa9eac045d7f8a149cb9797 609 SUPERFAMILY SSF143975 3 420 6.41E-138 T 13-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDG55_01320 2fab6b088aa9eac045d7f8a149cb9797 609 Pfam PF00920 Dehydratase family 34 605 9.9E-224 T 13-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDG55_01320 2fab6b088aa9eac045d7f8a149cb9797 609 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 607 4.3E-252 T 13-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 CDG55_01320 2fab6b088aa9eac045d7f8a149cb9797 609 Gene3D G3DSA:3.50.30.80 421 573 4.8E-56 T 13-10-2018 CDG55_04210 2da989b755f1c97d6f798cc6e05c7477 105 SUPERFAMILY SSF103481 6 104 6.41E-20 T 13-10-2018 CDG55_04210 2da989b755f1c97d6f798cc6e05c7477 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 6.5E-28 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CDG55_04210 2da989b755f1c97d6f798cc6e05c7477 105 Gene3D G3DSA:1.10.3730.20 1 105 3.3E-32 T 13-10-2018 CDG55_09725 7c017ffb4dce9f5c7efed285f903b9e0 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 2 148 4.9E-49 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09725 7c017ffb4dce9f5c7efed285f903b9e0 148 SUPERFAMILY SSF55658 1 57 4.53E-18 T 13-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CDG55_09725 7c017ffb4dce9f5c7efed285f903b9e0 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 146 5.7E-26 T 13-10-2018 IPR020069 Ribosomal protein L9, C-terminal CDG55_09725 7c017ffb4dce9f5c7efed285f903b9e0 148 SUPERFAMILY SSF55653 60 148 1.7E-25 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CDG55_09725 7c017ffb4dce9f5c7efed285f903b9e0 148 Gene3D G3DSA:3.10.430.100 61 148 6.3E-29 T 13-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CDG55_09725 7c017ffb4dce9f5c7efed285f903b9e0 148 Gene3D G3DSA:3.40.5.10 1 50 1.0E-21 T 13-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09725 7c017ffb4dce9f5c7efed285f903b9e0 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 2 46 7.8E-21 T 13-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09725 7c017ffb4dce9f5c7efed285f903b9e0 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 25.345 T 13-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 SUPERFAMILY SSF50249 73 148 1.82E-8 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 SUPERFAMILY SSF50249 230 631 5.57E-140 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 Pfam PF00773 RNB domain 262 588 3.7E-106 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 SUPERFAMILY SSF50249 632 723 1.79E-18 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 TIGRFAM TIGR02063 RNase_R: ribonuclease R 22 714 3.2E-231 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 Pfam PF08206 Ribonuclease B OB domain 91 140 4.9E-6 T 13-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 SMART SM00955 262 588 7.2E-173 T 13-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 Hamap MF_01895 Ribonuclease R [rnr]. 41 714 50.563 T 13-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 SUPERFAMILY SSF50249 139 240 4.5E-11 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 SMART SM00316 631 714 8.1E-11 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 Pfam PF00575 S1 RNA binding domain 632 711 2.9E-10 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 Gene3D G3DSA:2.40.50.140 634 743 3.6E-20 T 13-10-2018 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 Gene3D G3DSA:2.40.50.140 70 149 2.1E-6 T 13-10-2018 CDG55_03310 40fcca5b631115fe59421a6fea1d7d7d 810 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 77 714 2.6E-193 T 13-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 CDG55_11895 c9f447b44e3103580e89f505161fbf17 382 Gene3D G3DSA:3.40.50.720 155 258 3.8E-22 T 13-10-2018 CDG55_11895 c9f447b44e3103580e89f505161fbf17 382 Gene3D G3DSA:3.40.50.720 264 376 1.1E-15 T 13-10-2018 CDG55_11895 c9f447b44e3103580e89f505161fbf17 382 Gene3D G3DSA:3.40.50.720 1 154 4.4E-28 T 13-10-2018 CDG55_11895 c9f447b44e3103580e89f505161fbf17 382 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 3 365 3.2E-97 T 13-10-2018 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CDG55_11895 c9f447b44e3103580e89f505161fbf17 382 SUPERFAMILY SSF54373 246 314 8.24E-26 T 13-10-2018 CDG55_11895 c9f447b44e3103580e89f505161fbf17 382 SUPERFAMILY SSF51971 1 368 5.18E-50 T 13-10-2018 CDG55_11895 c9f447b44e3103580e89f505161fbf17 382 Pfam PF13450 NAD(P)-binding Rossmann-like domain 6 73 5.0E-15 T 13-10-2018 CDG55_11895 c9f447b44e3103580e89f505161fbf17 382 Pfam PF03275 UDP-galactopyranose mutase 148 347 1.1E-77 T 13-10-2018 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 CDG55_15135 9a4dcdcb49ed901128bc801b99f02d1e 232 SUPERFAMILY SSF54423 31 82 1.8E-10 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CDG55_15135 9a4dcdcb49ed901128bc801b99f02d1e 232 Gene3D G3DSA:3.40.30.10 79 228 4.9E-35 T 13-10-2018 CDG55_15135 9a4dcdcb49ed901128bc801b99f02d1e 232 Gene3D G3DSA:3.10.450.70 20 78 5.6E-6 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CDG55_15135 9a4dcdcb49ed901128bc801b99f02d1e 232 Pfam PF10411 Disulfide bond isomerase protein N-terminus 26 78 1.0E-12 T 13-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal CDG55_15135 9a4dcdcb49ed901128bc801b99f02d1e 232 Pfam PF13098 Thioredoxin-like domain 107 223 2.5E-28 T 13-10-2018 IPR012336 Thioredoxin-like fold CDG55_15135 9a4dcdcb49ed901128bc801b99f02d1e 232 SUPERFAMILY SSF52833 90 224 2.36E-30 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_09395 071a8abfebd5076c0249314587741490 281 Gene3D G3DSA:3.30.70.270 112 277 7.5E-42 T 13-10-2018 CDG55_09395 071a8abfebd5076c0249314587741490 281 SUPERFAMILY SSF55073 125 277 1.18E-37 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_09395 071a8abfebd5076c0249314587741490 281 Pfam PF00990 Diguanylate cyclase, GGDEF domain 121 273 1.7E-34 T 13-10-2018 IPR000160 GGDEF domain CDG55_09395 071a8abfebd5076c0249314587741490 281 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 117 277 1.6E-37 T 13-10-2018 IPR000160 GGDEF domain CDG55_09395 071a8abfebd5076c0249314587741490 281 SMART SM00267 109 278 5.6E-35 T 13-10-2018 IPR000160 GGDEF domain CDG55_05595 8f9d0aa5be74d9e5de4e45873c5bb480 128 Pfam PF11342 Protein of unknown function (DUF3144) 20 105 2.9E-30 T 13-10-2018 IPR021490 Protein of unknown function DUF3144 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 Gene3D G3DSA:3.40.50.80 99 253 5.1E-38 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 215 223 7.1E-6 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 7.1E-6 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 53 60 7.1E-6 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 Gene3D G3DSA:2.40.30.10 1 96 1.1E-29 T 13-10-2018 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 SUPERFAMILY SSF63380 7 100 2.51E-24 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 Pfam PF00175 Oxidoreductase NAD-binding domain 116 229 4.8E-13 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 SUPERFAMILY SSF52343 109 251 8.77E-32 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 Pfam PF00970 Oxidoreductase FAD-binding domain 19 92 4.6E-8 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 34 46 2.1E-5 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 140 149 2.1E-5 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 215 223 2.1E-5 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CDG55_04405 a7ebbd57be8f1e923466d411ccc0f5aa 253 PRINTS PR00410 Phenol hydroxylase reductase family signature 115 134 2.1E-5 T 13-10-2018 IPR001221 Phenol hydroxylase reductase GO:0055114 CDG55_05225 76e150d6449e000562167e869405b338 165 Pfam PF03061 Thioesterase superfamily 68 153 8.4E-13 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CDG55_05225 76e150d6449e000562167e869405b338 165 Gene3D G3DSA:3.10.129.10 10 165 3.0E-41 T 13-10-2018 CDG55_05225 76e150d6449e000562167e869405b338 165 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 37 159 1.9E-11 T 13-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 CDG55_05225 76e150d6449e000562167e869405b338 165 SUPERFAMILY SSF54637 24 163 9.83E-21 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:1.20.120.160 207 338 1.9E-16 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:1.20.120.160 905 1024 3.7E-16 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM00260 1383 1529 1.2E-16 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Pfam PF01627 Hpt domain 210 291 5.4E-11 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Pfam PF01627 Hpt domain 907 971 9.6E-11 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Pfam PF01627 Hpt domain 526 614 6.4E-14 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Pfam PF01627 Hpt domain 718 806 6.1E-14 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Pfam PF01627 Hpt domain 25 107 6.9E-12 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SUPERFAMILY SSF47226 715 834 7.72E-25 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM00448 1554 1667 7.7E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:3.30.565.10 1204 1390 2.1E-54 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SUPERFAMILY SSF47226 907 976 6.8E-16 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:3.40.50.12740 1554 1675 2.4E-40 T 13-10-2018 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SUPERFAMILY SSF50341 1390 1527 1.44E-18 T 13-10-2018 IPR036061 CheW-like domain superfamily GO:0006935|GO:0007165 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM01231 1068 1205 3.7E-9 T 13-10-2018 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SUPERFAMILY SSF47226 523 634 1.83E-24 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1254 1389 1.8E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Pfam PF00072 Response regulator receiver domain 1556 1667 3.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Pfam PF01584 CheW-like domain 1396 1532 4.3E-17 T 13-10-2018 IPR002545 CheW-like domain GO:0006935|GO:0007165 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:1.20.120.160 522 653 9.9E-23 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:1.20.120.160 714 848 6.4E-23 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SUPERFAMILY SSF55874 1208 1388 1.96E-35 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SUPERFAMILY SSF47226 23 115 4.97E-21 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1351 1369 6.3E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1295 1309 6.3E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1375 1388 6.3E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1335 1345 6.3E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:2.40.50.180 1414 1483 7.5E-32 T 13-10-2018 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SUPERFAMILY SSF52172 1555 1672 1.29E-37 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SUPERFAMILY SSF47226 203 312 3.53E-17 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM00073 208 302 5.8E-4 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM00073 716 813 6.3E-10 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM00073 524 621 6.3E-10 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM00073 23 120 1.1E-4 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM00073 901 1002 0.0017 T 13-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:1.20.120.160 16 149 3.2E-19 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 SMART SM00387 1250 1391 8.9E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11475 95ab4abbef02d323aa809e7615a76a0a 1675 Gene3D G3DSA:2.30.30.40 1391 1524 7.5E-32 T 13-10-2018 CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 SUPERFAMILY SSF52518 316 501 1.39E-59 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 SUPERFAMILY SSF52518 12 381 1.92E-73 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 16 284 6.4E-105 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 Gene3D G3DSA:3.40.50.920 504 630 7.9E-34 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 Gene3D G3DSA:3.40.50.970 317 491 7.9E-68 T 13-10-2018 CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 19 628 2.0E-235 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 15 631 41.911 T 13-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 SUPERFAMILY SSF52922 492 628 4.32E-27 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 Pfam PF02779 Transketolase, pyrimidine binding domain 319 478 2.6E-39 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 Pfam PF02780 Transketolase, C-terminal domain 506 622 1.5E-23 T 13-10-2018 IPR033248 Transketolase, C-terminal domain CDG55_02975 51e99efdb75ba33b27a0c6da14094f6a 631 SMART SM00861 319 483 5.0E-67 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 SUPERFAMILY SSF48179 500 638 4.42E-21 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 Gene3D G3DSA:1.10.1040.50 502 705 6.5E-56 T 13-10-2018 CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 202 2.6E-30 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 SUPERFAMILY SSF51735 317 499 4.8E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 320 498 4.4E-59 T 13-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 Gene3D G3DSA:3.90.226.10 1 317 3.0E-98 T 13-10-2018 CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 Gene3D G3DSA:3.40.50.720 318 501 1.0E-65 T 13-10-2018 CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 501 601 2.9E-16 T 13-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 SUPERFAMILY SSF52096 1 299 4.27E-60 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_11655 b8461dac164da68c3051e704a05d32e8 715 SUPERFAMILY SSF48179 622 714 1.79E-16 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_14755 d6c53a13b67b2100862f3dd7e63c11fa 376 Gene3D G3DSA:3.40.50.2000 188 327 1.5E-101 T 13-10-2018 CDG55_14755 d6c53a13b67b2100862f3dd7e63c11fa 376 SUPERFAMILY SSF53756 3 375 6.17E-110 T 13-10-2018 CDG55_14755 d6c53a13b67b2100862f3dd7e63c11fa 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 4 363 4.7E-64 T 13-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 CDG55_14755 d6c53a13b67b2100862f3dd7e63c11fa 376 Gene3D G3DSA:3.40.50.2000 7 187 1.5E-101 T 13-10-2018 CDG55_14755 d6c53a13b67b2100862f3dd7e63c11fa 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 28 361 3.7E-89 T 13-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 CDG55_01735 70a904b2457bb5e506e4b099df7f514b 274 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 18 263 3.2E-21 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase CDG55_01735 70a904b2457bb5e506e4b099df7f514b 274 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 14 270 3.0E-67 T 13-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 CDG55_01735 70a904b2457bb5e506e4b099df7f514b 274 Gene3D G3DSA:3.60.10.10 12 273 1.3E-79 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CDG55_01735 70a904b2457bb5e506e4b099df7f514b 274 SUPERFAMILY SSF56219 14 271 9.03E-71 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CDG55_01735 70a904b2457bb5e506e4b099df7f514b 274 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 14 268 1.1E-63 T 13-10-2018 CDG55_10620 fb32859d55789438720d10fa0da01c4e 464 PIRSF PIRSF006060 2 464 7.8E-71 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CDG55_10620 fb32859d55789438720d10fa0da01c4e 464 Pfam PF00324 Amino acid permease 19 463 9.4E-116 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CDG55_10620 fb32859d55789438720d10fa0da01c4e 464 Gene3D G3DSA:1.20.1740.10 11 464 2.2E-63 T 13-10-2018 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 SUPERFAMILY SSF52425 6 195 1.83E-43 T 13-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 SUPERFAMILY SSF48173 207 478 3.66E-106 T 13-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 Gene3D G3DSA:1.25.40.80 136 296 3.4E-72 T 13-10-2018 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 Pfam PF03441 FAD binding domain of DNA photolyase 285 477 1.9E-84 T 13-10-2018 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Reactome: R-HSA-400253 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 Gene3D G3DSA:1.10.579.10 303 479 1.1E-79 T 13-10-2018 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 Gene3D G3DSA:3.40.50.620 7 212 3.4E-72 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 Pfam PF00875 DNA photolyase 7 170 4.9E-38 T 13-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 PRINTS PR00147 DNA photolyase signature 394 408 2.2E-22 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 PRINTS PR00147 DNA photolyase signature 335 351 2.2E-22 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CDG55_05540 7af143258065140e6a8ce3611f5c9487 480 PRINTS PR00147 DNA photolyase signature 355 373 2.2E-22 T 13-10-2018 IPR002081 Cryptochrome/DNA photolyase class 1 CDG55_12075 b81c5e7417bb439beb73da46516481e3 371 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 8 351 3.5E-129 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CDG55_12075 b81c5e7417bb439beb73da46516481e3 371 PIRSF PIRSF004640 1 362 8.8E-147 T 13-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CDG55_12075 b81c5e7417bb439beb73da46516481e3 371 SUPERFAMILY SSF56014 264 352 1.89E-13 T 13-10-2018 CDG55_12075 b81c5e7417bb439beb73da46516481e3 371 SUPERFAMILY SSF51717 15 208 1.18E-10 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_12075 b81c5e7417bb439beb73da46516481e3 371 Gene3D G3DSA:3.20.20.20 1 260 4.6E-104 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_12075 b81c5e7417bb439beb73da46516481e3 371 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 6 362 34.629 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CDG55_12075 b81c5e7417bb439beb73da46516481e3 371 Pfam PF04551 GcpE protein 11 352 6.0E-133 T 13-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 CDG55_12075 b81c5e7417bb439beb73da46516481e3 371 Gene3D G3DSA:3.30.413.10 261 361 8.3E-27 T 13-10-2018 CDG55_04060 ecaf8dbccf80bedaa436032bcc8c172a 113 SUPERFAMILY SSF69754 1 103 2.62E-23 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CDG55_04060 ecaf8dbccf80bedaa436032bcc8c172a 113 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 100 5.5E-18 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CDG55_04060 ecaf8dbccf80bedaa436032bcc8c172a 113 Gene3D G3DSA:3.30.160.100 1 110 3.5E-27 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CDG55_04060 ecaf8dbccf80bedaa436032bcc8c172a 113 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 107 4.9E-24 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CDG55_11465 e546869e7504f4393ea07e10fe93a23d 377 Gene3D G3DSA:3.30.70.360 181 294 3.3E-129 T 13-10-2018 CDG55_11465 e546869e7504f4393ea07e10fe93a23d 377 Pfam PF07687 Peptidase dimerisation domain 177 281 2.0E-23 T 13-10-2018 IPR011650 Peptidase M20, dimerisation domain CDG55_11465 e546869e7504f4393ea07e10fe93a23d 377 Pfam PF01546 Peptidase family M20/M25/M40 64 373 1.8E-43 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CDG55_11465 e546869e7504f4393ea07e10fe93a23d 377 Gene3D G3DSA:3.40.630.10 12 364 3.3E-129 T 13-10-2018 CDG55_11465 e546869e7504f4393ea07e10fe93a23d 377 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 7 375 1.6E-168 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 CDG55_11465 e546869e7504f4393ea07e10fe93a23d 377 SUPERFAMILY SSF55031 181 290 5.23E-32 T 13-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain CDG55_11465 e546869e7504f4393ea07e10fe93a23d 377 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 377 52.659 T 13-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 CDG55_11465 e546869e7504f4393ea07e10fe93a23d 377 SUPERFAMILY SSF53187 2 376 1.42E-65 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 335 356 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 424 444 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 402 417 6.1E-68 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.6E-27 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 3.6E-27 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 3.6E-27 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 3.6E-27 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 3.6E-27 T 13-10-2018 CDG55_08875 66d06690e82130a49613c97569f92668 450 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 450 3.5E-216 T 13-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 CDG55_08875 66d06690e82130a49613c97569f92668 450 PIRSF PIRSF000350 1 447 1.6E-90 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CDG55_08875 66d06690e82130a49613c97569f92668 450 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 318 6.5E-69 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_08875 66d06690e82130a49613c97569f92668 450 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 339 449 9.9E-34 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDG55_08875 66d06690e82130a49613c97569f92668 450 Gene3D G3DSA:3.30.390.30 338 450 8.9E-46 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_08875 66d06690e82130a49613c97569f92668 450 SUPERFAMILY SSF51905 1 359 4.59E-59 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08875 66d06690e82130a49613c97569f92668 450 SUPERFAMILY SSF55424 336 450 2.92E-34 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_08875 66d06690e82130a49613c97569f92668 450 Gene3D G3DSA:3.50.50.60 144 261 5.5E-124 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08875 66d06690e82130a49613c97569f92668 450 Gene3D G3DSA:3.50.50.60 5 318 5.5E-124 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_13790 a2bdf4d58d22794e97dfaf757f933fc1 380 Gene3D G3DSA:3.30.565.10 241 372 5.1E-8 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_13790 a2bdf4d58d22794e97dfaf757f933fc1 380 Pfam PF06580 Histidine kinase 188 265 1.1E-24 T 13-10-2018 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 CDG55_06195 1841034a015181e9afe2f77539c1f807 301 SUPERFAMILY SSF46785 5 115 3.38E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_06195 1841034a015181e9afe2f77539c1f807 301 Gene3D G3DSA:1.10.10.10 3 88 1.9E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_06195 1841034a015181e9afe2f77539c1f807 301 Gene3D G3DSA:3.40.190.10 95 294 7.5E-51 T 13-10-2018 CDG55_06195 1841034a015181e9afe2f77539c1f807 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 1.9E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_06195 1841034a015181e9afe2f77539c1f807 301 Gene3D G3DSA:3.40.190.10 165 265 7.5E-51 T 13-10-2018 CDG55_06195 1841034a015181e9afe2f77539c1f807 301 SUPERFAMILY SSF53850 92 297 1.49E-27 T 13-10-2018 CDG55_06195 1841034a015181e9afe2f77539c1f807 301 Pfam PF03466 LysR substrate binding domain 91 295 1.7E-36 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_14040 f2a6fc168ad5c7e9895152ab59d3d6f5 527 SUPERFAMILY SSF56176 442 519 8.45E-21 T 13-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 CDG55_14040 f2a6fc168ad5c7e9895152ab59d3d6f5 527 Pfam PF03741 Integral membrane protein TerC family 17 205 8.0E-50 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 CDG55_14040 f2a6fc168ad5c7e9895152ab59d3d6f5 527 Pfam PF03471 Transporter associated domain 444 519 9.5E-21 T 13-10-2018 IPR005170 Transporter-associated domain CDG55_14040 f2a6fc168ad5c7e9895152ab59d3d6f5 527 SMART SM01091 442 522 4.5E-26 T 13-10-2018 IPR005170 Transporter-associated domain CDG55_14040 f2a6fc168ad5c7e9895152ab59d3d6f5 527 Gene3D G3DSA:3.10.580.10 293 441 2.0E-37 T 13-10-2018 CDG55_14040 f2a6fc168ad5c7e9895152ab59d3d6f5 527 Pfam PF00571 CBS domain 379 428 5.2E-4 T 13-10-2018 IPR000644 CBS domain CDG55_14040 f2a6fc168ad5c7e9895152ab59d3d6f5 527 Gene3D G3DSA:3.30.465.10 442 523 7.5E-22 T 13-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 CDG55_14040 f2a6fc168ad5c7e9895152ab59d3d6f5 527 SUPERFAMILY SSF54631 299 435 4.88E-20 T 13-10-2018 CDG55_00590 368cc20fa08109524f37c721ade20e38 515 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 312 336 4.7E-20 T 13-10-2018 CDG55_00590 368cc20fa08109524f37c721ade20e38 515 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 180 196 4.7E-20 T 13-10-2018 CDG55_00590 368cc20fa08109524f37c721ade20e38 515 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 278 290 4.7E-20 T 13-10-2018 CDG55_00590 368cc20fa08109524f37c721ade20e38 515 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 203 217 4.7E-20 T 13-10-2018 CDG55_00590 368cc20fa08109524f37c721ade20e38 515 Gene3D G3DSA:3.40.50.150 157 461 3.4E-112 T 13-10-2018 CDG55_00590 368cc20fa08109524f37c721ade20e38 515 Pfam PF02384 N-6 DNA Methylase 156 477 7.6E-110 T 13-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 CDG55_00590 368cc20fa08109524f37c721ade20e38 515 SUPERFAMILY SSF53335 16 511 3.0E-133 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_00590 368cc20fa08109524f37c721ade20e38 515 Gene3D G3DSA:1.20.1260.30 2 147 1.2E-46 T 13-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily CDG55_00590 368cc20fa08109524f37c721ade20e38 515 Pfam PF12161 HsdM N-terminal domain 14 144 1.9E-25 T 13-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain CDG55_04385 fdf87201d4eda916e3ef3fbb1b768ed6 211 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 42.558 T 13-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CDG55_04385 fdf87201d4eda916e3ef3fbb1b768ed6 211 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 207 8.9E-86 T 13-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 CDG55_04385 fdf87201d4eda916e3ef3fbb1b768ed6 211 SUPERFAMILY SSF53271 5 206 8.0E-65 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CDG55_04385 fdf87201d4eda916e3ef3fbb1b768ed6 211 Pfam PF14681 Uracil phosphoribosyltransferase 7 206 1.1E-63 T 13-10-2018 CDG55_04385 fdf87201d4eda916e3ef3fbb1b768ed6 211 Gene3D G3DSA:3.40.50.2020 2 207 8.6E-70 T 13-10-2018 CDG55_04600 f4b1028d3ad37cf9e1033f3c49eadee2 329 Gene3D G3DSA:3.30.1400.10 186 327 6.7E-34 T 13-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 CDG55_04600 f4b1028d3ad37cf9e1033f3c49eadee2 329 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 204 327 1.0E-61 T 13-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 CDG55_04600 f4b1028d3ad37cf9e1033f3c49eadee2 329 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 190 317 1.5E-29 T 13-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 CDG55_04600 f4b1028d3ad37cf9e1033f3c49eadee2 329 SMART SM00771 188 319 1.9E-46 T 13-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 CDG55_04600 f4b1028d3ad37cf9e1033f3c49eadee2 329 SUPERFAMILY SSF64383 189 323 2.88E-31 T 13-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 CDG55_11870 2fce9dc0755812ee954d20b8d3427802 675 Gene3D G3DSA:2.170.130.10 38 159 1.0E-22 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_11870 2fce9dc0755812ee954d20b8d3427802 675 SUPERFAMILY SSF56935 33 675 2.62E-84 T 13-10-2018 CDG55_11870 2fce9dc0755812ee954d20b8d3427802 675 Gene3D G3DSA:2.40.170.20 161 675 1.5E-58 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_11870 2fce9dc0755812ee954d20b8d3427802 675 Pfam PF00593 TonB dependent receptor 277 674 1.5E-33 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_11870 2fce9dc0755812ee954d20b8d3427802 675 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 148 3.5E-10 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 SUPERFAMILY SSF50104 120 175 5.19E-15 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 Gene3D G3DSA:3.30.70.940 1 117 1.5E-45 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 PRINTS PR00338 Transcription termination factor NUSG signature 56 68 9.0E-16 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 PRINTS PR00338 Transcription termination factor NUSG signature 152 168 9.0E-16 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 PRINTS PR00338 Transcription termination factor NUSG signature 134 149 9.0E-16 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 Gene3D G3DSA:2.30.30.30 118 175 2.2E-19 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 4 175 3.1E-62 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 Pfam PF02357 Transcription termination factor nusG 2 107 3.4E-28 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 SMART SM00739 122 149 0.0066 T 13-10-2018 IPR005824 KOW CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 SMART SM00738 1 110 4.9E-43 T 13-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 SUPERFAMILY SSF82679 1 112 6.93E-38 T 13-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 CDG55_13685 252e9cb9763d78c67bf29899adae013b 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 176 22.356 T 13-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 Gene3D G3DSA:3.40.630.10 166 479 6.3E-135 T 13-10-2018 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 PRINTS PR00481 Cytosol aminopeptidase signature 327 347 3.3E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 PRINTS PR00481 Cytosol aminopeptidase signature 355 370 3.3E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 PRINTS PR00481 Cytosol aminopeptidase signature 246 263 3.3E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 PRINTS PR00481 Cytosol aminopeptidase signature 305 326 3.3E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 PRINTS PR00481 Cytosol aminopeptidase signature 268 289 3.3E-54 T 13-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 Gene3D G3DSA:3.40.220.10 1 165 1.1E-12 T 13-10-2018 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 SUPERFAMILY SSF52949 1 162 4.36E-11 T 13-10-2018 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 168 470 2.2E-121 T 13-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 SUPERFAMILY SSF53187 163 478 1.76E-123 T 13-10-2018 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 31 135 5.0E-9 T 13-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 CDG55_13930 88cc8b02e8e45c1a406db9497356f969 482 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 479 35.3 T 13-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 CDG55_06225 b4c8bd87c2ed2cdf1e724c31ba6a06bb 245 SUPERFAMILY SSF53098 128 211 1.37E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_03670 9764a99e251cce355474c17d341fe250 152 Pfam PF02556 Preprotein translocase subunit SecB 4 141 2.5E-49 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDG55_03670 9764a99e251cce355474c17d341fe250 152 Gene3D G3DSA:3.10.420.10 1 152 1.3E-50 T 13-10-2018 IPR035958 SecB-like superfamily CDG55_03670 9764a99e251cce355474c17d341fe250 152 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 5 138 1.7E-46 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDG55_03670 9764a99e251cce355474c17d341fe250 152 Hamap MF_00821 Protein-export protein SecB [secB]. 1 143 30.61 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDG55_03670 9764a99e251cce355474c17d341fe250 152 SUPERFAMILY SSF54611 2 140 6.1E-46 T 13-10-2018 IPR035958 SecB-like superfamily CDG55_03670 9764a99e251cce355474c17d341fe250 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 12 29 2.4E-31 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDG55_03670 9764a99e251cce355474c17d341fe250 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 95 117 2.4E-31 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDG55_03670 9764a99e251cce355474c17d341fe250 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 121 139 2.4E-31 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDG55_03670 9764a99e251cce355474c17d341fe250 152 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 71 91 2.4E-31 T 13-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 CDG55_08010 fa9ebc690a6752b28b882ec53c6a543c 383 Gene3D G3DSA:3.40.50.300 1 217 2.1E-73 T 13-10-2018 CDG55_08010 fa9ebc690a6752b28b882ec53c6a543c 383 Pfam PF00271 Helicase conserved C-terminal domain 237 346 4.0E-29 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_08010 fa9ebc690a6752b28b882ec53c6a543c 383 SMART SM00487 22 229 3.4E-57 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_08010 fa9ebc690a6752b28b882ec53c6a543c 383 Gene3D G3DSA:3.40.50.300 220 377 1.4E-50 T 13-10-2018 CDG55_08010 fa9ebc690a6752b28b882ec53c6a543c 383 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 2 382 49.539 T 13-10-2018 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 CDG55_08010 fa9ebc690a6752b28b882ec53c6a543c 383 Pfam PF00270 DEAD/DEAH box helicase 27 200 3.0E-46 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDG55_08010 fa9ebc690a6752b28b882ec53c6a543c 383 SUPERFAMILY SSF52540 78 365 2.57E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08010 fa9ebc690a6752b28b882ec53c6a543c 383 SMART SM00490 265 346 2.6E-29 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_06620 cbc2026b876dd52974b6fd01295a3cce 662 Pfam PF01841 Transglutaminase-like superfamily 354 469 5.1E-24 T 13-10-2018 IPR002931 Transglutaminase-like CDG55_06620 cbc2026b876dd52974b6fd01295a3cce 662 SUPERFAMILY SSF54001 326 587 1.54E-56 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CDG55_06620 cbc2026b876dd52974b6fd01295a3cce 662 SMART SM00460 401 471 4.4E-21 T 13-10-2018 IPR002931 Transglutaminase-like CDG55_06620 cbc2026b876dd52974b6fd01295a3cce 662 Gene3D G3DSA:3.10.620.30 316 493 4.2E-23 T 13-10-2018 CDG55_06620 cbc2026b876dd52974b6fd01295a3cce 662 Pfam PF11992 Domain of unknown function (DUF3488) 9 307 5.8E-66 T 13-10-2018 IPR021878 Protein of unknown function DUF3488 CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 Pfam PF04055 Radical SAM superfamily 186 360 6.7E-29 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 31 476 69.346 T 13-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 Gene3D G3DSA:3.80.30.20 181 415 3.2E-81 T 13-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 Pfam PF01938 TRAM domain 414 475 2.0E-7 T 13-10-2018 IPR002792 TRAM domain CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 Pfam PF00919 Uncharacterized protein family UPF0004 32 132 1.9E-28 T 13-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 SMART SM00729 182 402 2.3E-60 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 32 470 5.9E-175 T 13-10-2018 CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 32 470 1.3E-140 T 13-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 SUPERFAMILY SSF102114 165 407 1.7E-62 T 13-10-2018 CDG55_12330 8a91c7f54c43f1e8af6c01ca0663d01d 483 Gene3D G3DSA:3.40.50.12160 31 165 4.5E-34 T 13-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily CDG55_09130 d0cd8c810b25b958468b3d7b85d4f12e 342 SUPERFAMILY SSF53474 71 323 9.04E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_09130 d0cd8c810b25b958468b3d7b85d4f12e 342 Gene3D G3DSA:3.40.50.1820 70 337 8.9E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_09130 d0cd8c810b25b958468b3d7b85d4f12e 342 Pfam PF12146 Serine aminopeptidase, S33 86 318 1.5E-30 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 CDG55_01850 4dfb1a3938aea2462e9824bfc36f5f65 265 SUPERFAMILY SSF56281 30 252 1.68E-29 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_01850 4dfb1a3938aea2462e9824bfc36f5f65 265 SMART SM00849 32 229 1.7E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_01850 4dfb1a3938aea2462e9824bfc36f5f65 265 Pfam PF00753 Metallo-beta-lactamase superfamily 31 229 1.2E-14 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_01850 4dfb1a3938aea2462e9824bfc36f5f65 265 Gene3D G3DSA:3.60.15.10 7 248 1.5E-33 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Hamap MF_01588 DNA ligase [ligA]. 4 670 50.112 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 666 1.3E-246 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Gene3D G3DSA:2.20.70.80 395 433 1.6E-14 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 325 401 4.9E-32 T 13-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Gene3D G3DSA:2.40.50.140 321 393 2.1E-32 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SMART SM00278 520 536 590.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SMART SM00278 449 468 1900.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SMART SM00278 485 504 25.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SMART SM00278 549 568 400.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Gene3D G3DSA:3.30.470.90 73 320 1.5E-98 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Gene3D G3DSA:1.10.150.20 435 510 7.0E-27 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Gene3D G3DSA:1.10.150.20 511 589 3.7E-27 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SMART SM00532 5 451 1.6E-244 T 13-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SUPERFAMILY SSF56091 3 319 3.96E-114 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SUPERFAMILY SSF52113 596 671 7.85E-17 T 13-10-2018 IPR036420 BRCT domain superfamily CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 7 321 2.7E-125 T 13-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 PIRSF PIRSF001604 1 675 9.9E-243 T 13-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Pfam PF12826 Helix-hairpin-helix motif 515 577 3.3E-21 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Pfam PF14520 Helix-hairpin-helix domain 449 505 5.8E-4 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SMART SM00292 596 673 2.3E-10 T 13-10-2018 IPR001357 BRCT domain CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Gene3D G3DSA:3.40.50.10190 590 673 2.7E-25 T 13-10-2018 IPR036420 BRCT domain superfamily CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SUPERFAMILY SSF47781 407 588 5.93E-61 T 13-10-2018 IPR010994 RuvA domain 2-like CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Gene3D G3DSA:1.10.287.610 1 72 4.4E-25 T 13-10-2018 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 410 437 2.2E-8 T 13-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 598 668 3.6E-12 T 13-10-2018 IPR001357 BRCT domain CDG55_04605 580e65b98a7b738958bf618006e6dd6a 675 SUPERFAMILY SSF50249 321 402 3.77E-27 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_10260 f8b2ff532045010dc8383c52d2b99906 150 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 10 147 27.627 T 13-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 CDG55_10260 f8b2ff532045010dc8383c52d2b99906 150 Gene3D G3DSA:3.30.420.270 65 144 2.3E-11 T 13-10-2018 CDG55_10260 f8b2ff532045010dc8383c52d2b99906 150 TIGRFAM TIGR02801 tolR: protein TolR 17 147 1.8E-43 T 13-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 CDG55_10260 f8b2ff532045010dc8383c52d2b99906 150 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 148 1.3E-28 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 Gene3D G3DSA:2.30.42.10 268 353 5.4E-12 T 13-10-2018 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 574 722 5.7E-29 T 13-10-2018 IPR020992 Tail specific protease, C-terminal CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 SMART SM00228 276 356 2.6E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 274 351 2.3E-9 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 Gene3D G3DSA:3.90.226.10 359 589 2.0E-52 T 13-10-2018 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 238 589 3.8E-73 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 SUPERFAMILY SSF50156 271 357 6.13E-12 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 SMART SM00245 360 570 2.7E-32 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 Pfam PF03572 Peptidase family S41 396 568 2.4E-38 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CDG55_03490 57b0a5f2377bec23c7619565b775d86d 727 SUPERFAMILY SSF52096 225 574 5.14E-52 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_00320 174afb4fcfc9171296f8d6003095ecb8 286 SUPERFAMILY SSF110710 1 266 3.14E-76 T 13-10-2018 IPR028345 Aminoglycoside 3-N-acetyltransferase-like CDG55_00320 174afb4fcfc9171296f8d6003095ecb8 286 Pfam PF02522 Aminoglycoside 3-N-acetyltransferase 23 263 9.6E-59 T 13-10-2018 IPR003679 Aminoglycoside N(3)-acetyltransferase GO:0046353|GO:0046677 CDG55_13365 c0236f7fbb5aa53b90304008268ca947 174 Gene3D G3DSA:3.30.300.70 2 100 1.0E-16 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily CDG55_13365 c0236f7fbb5aa53b90304008268ca947 174 Pfam PF17384 RimP C-terminal SH3 domain 109 172 6.8E-12 T 13-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal CDG55_13365 c0236f7fbb5aa53b90304008268ca947 174 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 8 174 21.187 T 13-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 CDG55_13365 c0236f7fbb5aa53b90304008268ca947 174 SUPERFAMILY SSF74942 104 173 1.26E-10 T 13-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily CDG55_13365 c0236f7fbb5aa53b90304008268ca947 174 Pfam PF02576 RimP N-terminal domain 13 103 1.6E-19 T 13-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal CDG55_13365 c0236f7fbb5aa53b90304008268ca947 174 SUPERFAMILY SSF75420 4 103 4.18E-19 T 13-10-2018 IPR035956 RimP, N-terminal domain superfamily CDG55_03860 86e00c5493ba41c5f26b9a4fcc6228ea 547 Pfam PF13193 AMP-binding enzyme C-terminal domain 453 527 3.4E-20 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CDG55_03860 86e00c5493ba41c5f26b9a4fcc6228ea 547 Pfam PF00501 AMP-binding enzyme 25 444 3.8E-99 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CDG55_03860 86e00c5493ba41c5f26b9a4fcc6228ea 547 SUPERFAMILY SSF56801 10 539 1.83E-147 T 13-10-2018 CDG55_03860 86e00c5493ba41c5f26b9a4fcc6228ea 547 Gene3D G3DSA:3.40.50.12780 8 439 1.5E-108 T 13-10-2018 CDG55_03860 86e00c5493ba41c5f26b9a4fcc6228ea 547 Gene3D G3DSA:3.30.300.310 440 543 6.7E-34 T 13-10-2018 CDG55_13415 646e87e1ea11199affcb603cdc570dfa 303 SUPERFAMILY SSF103481 42 138 1.57E-10 T 13-10-2018 CDG55_13415 646e87e1ea11199affcb603cdc570dfa 303 Pfam PF00892 EamA-like transporter family 7 138 4.0E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_13415 646e87e1ea11199affcb603cdc570dfa 303 Pfam PF00892 EamA-like transporter family 151 282 2.1E-12 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_09375 a268b893659f3c3fdd96b89ffcddcb92 249 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 1.5E-95 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09375 a268b893659f3c3fdd96b89ffcddcb92 249 Gene3D G3DSA:3.30.70.980 85 236 5.4E-53 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09375 a268b893659f3c3fdd96b89ffcddcb92 249 SUPERFAMILY SSF75625 3 246 6.54E-92 T 13-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09375 a268b893659f3c3fdd96b89ffcddcb92 249 Gene3D G3DSA:1.10.10.200 1 81 2.5E-33 T 13-10-2018 IPR017856 Integrase-like, N-terminal CDG55_09375 a268b893659f3c3fdd96b89ffcddcb92 249 Pfam PF01709 Transcriptional regulator 5 237 1.9E-92 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09375 a268b893659f3c3fdd96b89ffcddcb92 249 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 34.772 T 13-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09375 a268b893659f3c3fdd96b89ffcddcb92 249 Gene3D G3DSA:3.30.70.980 130 204 5.4E-53 T 13-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_06835 dda14ef23f2b7cc11a92d49fdb410398 442 Gene3D G3DSA:3.30.565.10 286 431 3.7E-16 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_06835 dda14ef23f2b7cc11a92d49fdb410398 442 SUPERFAMILY SSF55874 286 417 4.71E-17 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_06835 dda14ef23f2b7cc11a92d49fdb410398 442 SMART SM00388 222 284 6.9E-13 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_06835 dda14ef23f2b7cc11a92d49fdb410398 442 SUPERFAMILY SSF47384 205 282 1.12E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_06835 dda14ef23f2b7cc11a92d49fdb410398 442 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 282 3.6E-11 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_06835 dda14ef23f2b7cc11a92d49fdb410398 442 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 414 7.4E-9 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_06835 dda14ef23f2b7cc11a92d49fdb410398 442 Gene3D G3DSA:1.10.287.130 167 285 9.9E-19 T 13-10-2018 CDG55_06835 dda14ef23f2b7cc11a92d49fdb410398 442 SMART SM00387 328 433 8.8E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 Pfam PF13180 PDZ domain 369 451 1.6E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 Pfam PF13180 PDZ domain 260 350 1.1E-17 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 PRINTS PR00834 HtrA/DegQ protease family signature 157 181 6.9E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 PRINTS PR00834 HtrA/DegQ protease family signature 117 137 6.9E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 PRINTS PR00834 HtrA/DegQ protease family signature 299 311 6.9E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 PRINTS PR00834 HtrA/DegQ protease family signature 96 108 6.9E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 PRINTS PR00834 HtrA/DegQ protease family signature 191 208 6.9E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 PRINTS PR00834 HtrA/DegQ protease family signature 213 230 6.9E-49 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 SUPERFAMILY SSF50156 240 350 1.01E-23 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 Gene3D G3DSA:2.40.10.120 28 252 1.3E-74 T 13-10-2018 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 SUPERFAMILY SSF50156 365 453 5.65E-14 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 Gene3D G3DSA:2.30.42.10 366 458 7.5E-14 T 13-10-2018 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 Gene3D G3DSA:2.30.42.10 254 358 8.9E-30 T 13-10-2018 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 SUPERFAMILY SSF50494 11 268 5.89E-61 T 13-10-2018 IPR009003 Peptidase S1, PA clan CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 SMART SM00228 259 341 1.9E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 SMART SM00228 368 448 1.2E-8 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 Pfam PF13365 Trypsin-like peptidase domain 87 220 3.4E-33 T 13-10-2018 CDG55_10105 ca75553ed3a2d3b1f31fcf600fa9638f 458 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 29 452 5.7E-138 T 13-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 Pfam PF13180 PDZ domain 284 373 2.7E-14 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 Gene3D G3DSA:2.40.10.120 58 277 1.9E-77 T 13-10-2018 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 Gene3D G3DSA:2.30.42.10 279 385 4.9E-21 T 13-10-2018 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 SMART SM00228 284 364 4.3E-16 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 Pfam PF13365 Trypsin-like peptidase domain 112 245 3.3E-31 T 13-10-2018 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 SUPERFAMILY SSF50494 58 281 1.63E-62 T 13-10-2018 IPR009003 Peptidase S1, PA clan CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 SUPERFAMILY SSF50156 255 366 2.89E-21 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 PRINTS PR00834 HtrA/DegQ protease family signature 238 255 1.1E-54 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 PRINTS PR00834 HtrA/DegQ protease family signature 322 334 1.1E-54 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 PRINTS PR00834 HtrA/DegQ protease family signature 142 162 1.1E-54 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 PRINTS PR00834 HtrA/DegQ protease family signature 216 233 1.1E-54 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 PRINTS PR00834 HtrA/DegQ protease family signature 121 133 1.1E-54 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_10030 61c09569d7f983dc7f7b6ca26b697050 394 PRINTS PR00834 HtrA/DegQ protease family signature 181 205 1.1E-54 T 13-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 CDG55_09850 68d5462221100d9d6151d80dc93fbd36 687 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 159 3.0E-14 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_09850 68d5462221100d9d6151d80dc93fbd36 687 Pfam PF00593 TonB dependent receptor 227 663 4.8E-35 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_09850 68d5462221100d9d6151d80dc93fbd36 687 SUPERFAMILY SSF56935 64 670 1.57E-83 T 13-10-2018 CDG55_09850 68d5462221100d9d6151d80dc93fbd36 687 Gene3D G3DSA:2.170.130.10 61 173 3.3E-17 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_09850 68d5462221100d9d6151d80dc93fbd36 687 Gene3D G3DSA:2.40.170.20 174 678 3.1E-54 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_15120 c19ce973a0d46aef2b16dcf9e5be7ca7 438 Gene3D G3DSA:3.20.20.140 76 393 9.5E-199 T 13-10-2018 CDG55_15120 c19ce973a0d46aef2b16dcf9e5be7ca7 438 Gene3D G3DSA:2.30.40.10 10 429 9.5E-199 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CDG55_15120 c19ce973a0d46aef2b16dcf9e5be7ca7 438 Pfam PF01979 Amidohydrolase family 73 432 6.0E-74 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CDG55_15120 c19ce973a0d46aef2b16dcf9e5be7ca7 438 SUPERFAMILY SSF51338 28 436 1.22E-7 T 13-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 CDG55_15120 c19ce973a0d46aef2b16dcf9e5be7ca7 438 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 32 431 3.3E-195 T 13-10-2018 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|Reactome: R-HSA-74259 CDG55_15120 c19ce973a0d46aef2b16dcf9e5be7ca7 438 SUPERFAMILY SSF51556 75 378 1.8E-105 T 13-10-2018 IPR032466 Metal-dependent hydrolase CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 Gene3D G3DSA:1.10.540.10 30 161 5.6E-20 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 1.5E-18 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 469 594 1.8E-36 T 13-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 SUPERFAMILY SSF47203 288 476 2.74E-46 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 159 4.5E-17 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 Gene3D G3DSA:2.40.110.10 162 288 2.7E-29 T 13-10-2018 CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 273 1.2E-17 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 SUPERFAMILY SSF56645 40 293 1.96E-61 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 Gene3D G3DSA:1.20.140.10 289 467 1.8E-40 T 13-10-2018 CDG55_11835 ecc15feb9ad94cd9d00a5f1b676ff021 600 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 32 2.7E-14 T 13-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 Gene3D G3DSA:3.40.50.300 95 383 5.0E-129 T 13-10-2018 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 SUPERFAMILY SSF50615 11 95 3.4E-27 T 13-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 93 1.2E-13 T 13-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 383 508 2.7E-44 T 13-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 Gene3D G3DSA:2.40.30.20 2 94 6.2E-31 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 513 49.763 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 SUPERFAMILY SSF52540 97 382 1.12E-92 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 376 5.9E-74 T 13-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 SUPERFAMILY SSF47917 384 512 1.02E-45 T 13-10-2018 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 512 3.8E-249 T 13-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14270 0227de07dcd5cc8600f41c72b1efe7f7 514 Gene3D G3DSA:1.20.150.20 384 514 2.0E-46 T 13-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 PRINTS PR01755 Bacterial translocase SecF protein signature 210 228 1.7E-26 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 PRINTS PR01755 Bacterial translocase SecF protein signature 48 63 1.7E-26 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 PRINTS PR01755 Bacterial translocase SecF protein signature 242 257 1.7E-26 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 PRINTS PR01755 Bacterial translocase SecF protein signature 162 176 1.7E-26 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 Gene3D G3DSA:1.20.1640.10 112 306 2.4E-13 T 13-10-2018 CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 Pfam PF02355 Protein export membrane protein 124 300 2.6E-61 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 Pfam PF07549 SecD/SecF GG Motif 43 70 9.8E-9 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 49 293 1.8E-77 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 126 291 5.6E-48 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 21 304 26.358 T 13-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 CDG55_12045 278c648d834c579f5fbc92c57ce7c32e 322 SUPERFAMILY SSF82866 89 301 3.79E-39 T 13-10-2018 CDG55_06065 cfd43eeb3380d85d29781f31e08415cf 469 SUPERFAMILY SSF55931 101 468 7.85E-130 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDG55_06065 cfd43eeb3380d85d29781f31e08415cf 469 SUPERFAMILY SSF54368 2 99 2.75E-35 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDG55_06065 cfd43eeb3380d85d29781f31e08415cf 469 Pfam PF00120 Glutamine synthetase, catalytic domain 101 466 7.8E-131 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDG55_06065 cfd43eeb3380d85d29781f31e08415cf 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 94 6.5E-31 T 13-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 CDG55_06065 cfd43eeb3380d85d29781f31e08415cf 469 Gene3D G3DSA:3.10.20.70 1 103 5.1E-38 T 13-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDG55_06065 cfd43eeb3380d85d29781f31e08415cf 469 SMART SM01230 101 379 6.4E-132 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDG55_06065 cfd43eeb3380d85d29781f31e08415cf 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 7.5E-195 T 13-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDG55_06065 cfd43eeb3380d85d29781f31e08415cf 469 Gene3D G3DSA:3.30.590.10 104 457 9.5E-137 T 13-10-2018 CDG55_05210 537ce7be5b7346f40a0db35e9a459b5a 301 SUPERFAMILY SSF51735 4 296 1.99E-40 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_05210 537ce7be5b7346f40a0db35e9a459b5a 301 Gene3D G3DSA:3.40.50.720 1 288 2.6E-68 T 13-10-2018 CDG55_05210 537ce7be5b7346f40a0db35e9a459b5a 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 224 7.7E-21 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CDG55_05210 537ce7be5b7346f40a0db35e9a459b5a 301 Pfam PF08338 Domain of unknown function (DUF1731) 251 297 2.1E-16 T 13-10-2018 IPR013549 Domain of unknown function DUF1731 CDG55_05210 537ce7be5b7346f40a0db35e9a459b5a 301 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 6 294 9.1E-85 T 13-10-2018 IPR010099 Epimerase family protein SDR39U1 CDG55_01535 6d52ec3e1bb326985f222167b2f0e055 146 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 7.6E-50 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CDG55_01535 6d52ec3e1bb326985f222167b2f0e055 146 SUPERFAMILY SSF69500 1 144 5.1E-54 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CDG55_01535 6d52ec3e1bb326985f222167b2f0e055 146 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 1.3E-54 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CDG55_01535 6d52ec3e1bb326985f222167b2f0e055 146 Gene3D G3DSA:3.50.80.10 1 145 4.6E-53 T 13-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CDG55_01535 6d52ec3e1bb326985f222167b2f0e055 146 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 32.131 T 13-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 CDG55_11200 cc7d8713805ce6ed9478ab972a6d8724 121 Gene3D G3DSA:3.90.1150.30 2 121 2.5E-34 T 13-10-2018 IPR038056 YjbR-like superfamily CDG55_11200 cc7d8713805ce6ed9478ab972a6d8724 121 SUPERFAMILY SSF142906 11 119 5.89E-33 T 13-10-2018 IPR038056 YjbR-like superfamily CDG55_11200 cc7d8713805ce6ed9478ab972a6d8724 121 Pfam PF04237 YjbR 22 106 6.4E-20 T 13-10-2018 IPR007351 Uncharacterised protein YjbR CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 SUPERFAMILY SSF52374 19 182 7.04E-31 T 13-10-2018 CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 19 77 2.7E-7 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 Pfam PF01687 Riboflavin kinase 180 323 2.6E-27 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 Pfam PF06574 FAD synthetase 17 163 3.0E-46 T 13-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 Gene3D G3DSA:3.40.50.620 6 181 6.2E-57 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 SUPERFAMILY SSF82114 169 327 2.83E-33 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 SMART SM00904 179 326 1.9E-42 T 13-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 230 1.9E-62 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 PIRSF PIRSF004491 2 331 1.5E-106 T 13-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 CDG55_14935 d606417f5c4273ca42aec7881c10da18 333 Gene3D G3DSA:2.40.30.30 182 331 9.1E-27 T 13-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 CDG55_12215 7812eae8bd2ebb5e2941956f4e31ece5 199 SUPERFAMILY SSF48498 91 198 2.67E-14 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CDG55_12215 7812eae8bd2ebb5e2941956f4e31ece5 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 44 67 4.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_12215 7812eae8bd2ebb5e2941956f4e31ece5 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 23 36 4.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_12215 7812eae8bd2ebb5e2941956f4e31ece5 199 SUPERFAMILY SSF46689 18 94 6.16E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_12215 7812eae8bd2ebb5e2941956f4e31ece5 199 Gene3D G3DSA:1.10.357.10 15 199 6.5E-51 T 13-10-2018 CDG55_12215 7812eae8bd2ebb5e2941956f4e31ece5 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 67 2.7E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 Pfam PF00270 DEAD/DEAH box helicase 65 216 2.4E-7 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 Pfam PF11898 Domain of unknown function (DUF3418) 708 1279 1.2E-146 T 13-10-2018 IPR024590 RNA helicase HrpA, C-terminal CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 618 693 9.1E-15 T 13-10-2018 IPR011709 Domain of unknown function DUF1605 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 Gene3D G3DSA:3.40.50.300 7 235 8.4E-75 T 13-10-2018 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 Pfam PF04408 Helicase associated domain (HA2) 466 553 1.8E-16 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 11 1279 0.0 T 13-10-2018 IPR010222 RNA helicase HrpA GO:0004004 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 Gene3D G3DSA:3.40.50.300 236 421 9.3E-51 T 13-10-2018 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 SMART SM00382 75 384 0.0012 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 Pfam PF00271 Helicase conserved C-terminal domain 288 403 5.2E-11 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 SMART SM00847 464 555 3.7E-32 T 13-10-2018 IPR007502 Helicase-associated domain GO:0004386 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 Gene3D G3DSA:1.20.120.1080 448 550 2.6E-17 T 13-10-2018 CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 SUPERFAMILY SSF52540 59 563 1.26E-102 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 SMART SM00490 303 404 9.5E-13 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_07560 c95acc2fef97ab4197b7ae76e8c363e9 1284 SMART SM00487 58 242 6.0E-29 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_01290 8ed73a2207781cfbc8c699411d6dd772 250 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 7 250 1.6E-65 T 13-10-2018 IPR026387 Outer membrane protein CDG55_12300 7093c5460e4852ed0ae059506bec8b16 203 Gene3D G3DSA:2.60.120.620 11 196 2.1E-50 T 13-10-2018 CDG55_12300 7093c5460e4852ed0ae059506bec8b16 203 SMART SM00702 22 194 6.6E-15 T 13-10-2018 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 CDG55_12300 7093c5460e4852ed0ae059506bec8b16 203 SUPERFAMILY SSF51197 14 198 5.49E-6 T 13-10-2018 CDG55_12300 7093c5460e4852ed0ae059506bec8b16 203 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 106 194 1.8E-20 T 13-10-2018 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 CDG55_03780 04cee632a0a7b65b207f26f29f7f9513 469 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 16 458 65.49 T 13-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 CDG55_03780 04cee632a0a7b65b207f26f29f7f9513 469 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 43 450 1.7E-94 T 13-10-2018 CDG55_03780 04cee632a0a7b65b207f26f29f7f9513 469 Gene3D G3DSA:3.40.50.150 97 452 4.1E-108 T 13-10-2018 CDG55_03780 04cee632a0a7b65b207f26f29f7f9513 469 Gene3D G3DSA:3.40.1350.30 144 287 4.1E-108 T 13-10-2018 CDG55_03780 04cee632a0a7b65b207f26f29f7f9513 469 SUPERFAMILY SSF53335 85 457 6.64E-82 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_03780 04cee632a0a7b65b207f26f29f7f9513 469 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 109 457 4.8E-28 T 13-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 CDG55_03780 04cee632a0a7b65b207f26f29f7f9513 469 SUPERFAMILY SSF50249 4 75 6.28E-7 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03780 04cee632a0a7b65b207f26f29f7f9513 469 Gene3D G3DSA:2.40.50.140 2 96 5.8E-15 T 13-10-2018 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Pfam PF02559 CarD-like/TRCF domain 482 575 5.8E-23 T 13-10-2018 IPR003711 CarD-like/TRCF domain CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SUPERFAMILY SSF143517 997 1149 4.97E-44 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SMART SM00487 602 797 2.0E-31 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Gene3D G3DSA:3.90.1150.50 1006 1151 4.1E-43 T 13-10-2018 IPR037235 TRCF-like, C-terminal domain CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Pfam PF00271 Helicase conserved C-terminal domain 807 911 3.6E-18 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Gene3D G3DSA:3.40.50.300 544 783 3.4E-228 T 13-10-2018 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 39 1108 27.147 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SMART SM00982 1010 1110 2.8E-47 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SUPERFAMILY SSF52540 353 467 3.06E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SMART SM00490 828 912 1.1E-19 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Pfam PF03461 TRCF domain 1011 1101 1.0E-27 T 13-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Gene3D G3DSA:3.40.50.11140 360 455 1.5E-11 T 13-10-2018 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SUPERFAMILY SSF52540 9 347 2.61E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SUPERFAMILY SSF141259 473 550 8.37E-23 T 13-10-2018 IPR036101 CarD-like/TRCF domain superfamily CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SMART SM01058 481 578 1.5E-47 T 13-10-2018 IPR003711 CarD-like/TRCF domain CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Gene3D G3DSA:3.30.2060.10 128 213 3.9E-102 T 13-10-2018 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Gene3D G3DSA:2.30.30.840 485 543 3.4E-228 T 13-10-2018 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Pfam PF00270 DEAD/DEAH box helicase 609 764 7.7E-20 T 13-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Gene3D G3DSA:3.40.50.11180 27 338 3.9E-102 T 13-10-2018 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 SUPERFAMILY SSF52540 653 922 1.23E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 145 1084 0.0 T 13-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 CDG55_06990 5988436d29f49e927210832fb5e70c5c 1153 Gene3D G3DSA:3.40.50.300 480 991 3.4E-228 T 13-10-2018 CDG55_09690 86fadb7941c4653454c853ddb510104a 206 Pfam PF00510 Cytochrome c oxidase subunit III 12 204 2.7E-15 T 13-10-2018 IPR000298 Cytochrome c oxidase subunit III-like GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09690 86fadb7941c4653454c853ddb510104a 206 Gene3D G3DSA:1.20.120.80 18 206 3.9E-53 T 13-10-2018 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09690 86fadb7941c4653454c853ddb510104a 206 SUPERFAMILY SSF81452 9 204 3.53E-56 T 13-10-2018 IPR035973 Cytochrome c oxidase subunit III-like superfamily GO:0015002|GO:0016020 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 CDG55_09690 86fadb7941c4653454c853ddb510104a 206 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 24 206 5.4E-81 T 13-10-2018 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 CDG55_08335 e9ca09c6bd834e84c70da54b82ec4660 101 Pfam PF00355 Rieske [2Fe-2S] domain 3 82 1.3E-13 T 13-10-2018 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 CDG55_08335 e9ca09c6bd834e84c70da54b82ec4660 101 Gene3D G3DSA:2.102.10.10 1 101 2.0E-17 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 CDG55_08335 e9ca09c6bd834e84c70da54b82ec4660 101 SUPERFAMILY SSF50022 3 100 1.22E-21 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 Pfam PF00199 Catalase 14 395 1.1E-186 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 Gene3D G3DSA:2.40.180.10 10 492 1.2E-224 T 13-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 PRINTS PR00067 Catalase signature 111 128 5.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 PRINTS PR00067 Catalase signature 295 322 5.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 PRINTS PR00067 Catalase signature 90 108 5.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 PRINTS PR00067 Catalase signature 27 50 5.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 PRINTS PR00067 Catalase signature 327 353 5.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 PRINTS PR00067 Catalase signature 130 148 5.3E-69 T 13-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 Pfam PF06628 Catalase-related immune-responsive 421 483 8.3E-20 T 13-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 SUPERFAMILY SSF56634 11 491 1.44E-210 T 13-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 SMART SM01060 14 398 6.2E-283 T 13-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12945 cec877fd5a396b76e94259531eaa5b1d 506 PIRSF PIRSF038928 2 489 1.7E-218 T 13-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 CDG55_12725 a2114a1734788ec91bc81929833713a7 444 Gene3D G3DSA:1.10.287.470 99 190 4.5E-20 T 13-10-2018 CDG55_12725 a2114a1734788ec91bc81929833713a7 444 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 337 1.2E-41 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CDG55_12725 a2114a1734788ec91bc81929833713a7 444 Gene3D G3DSA:2.40.30.170 223 318 1.1E-28 T 13-10-2018 CDG55_12725 a2114a1734788ec91bc81929833713a7 444 SUPERFAMILY SSF111369 58 278 1.44E-23 T 13-10-2018 CDG55_12725 a2114a1734788ec91bc81929833713a7 444 Gene3D G3DSA:2.40.420.20 366 443 2.2E-8 T 13-10-2018 CDG55_12725 a2114a1734788ec91bc81929833713a7 444 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 273 7.5E-13 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDG55_04750 9cb44070c8e8d190ba0c4f9000cb0c82 157 SMART SM00257 107 156 1.5E-12 T 13-10-2018 IPR018392 LysM domain CDG55_04750 9cb44070c8e8d190ba0c4f9000cb0c82 157 Pfam PF01476 LysM domain 108 156 2.4E-11 T 13-10-2018 IPR018392 LysM domain CDG55_04750 9cb44070c8e8d190ba0c4f9000cb0c82 157 Pfam PF04972 BON domain 43 99 3.9E-7 T 13-10-2018 IPR007055 BON domain CDG55_04750 9cb44070c8e8d190ba0c4f9000cb0c82 157 SUPERFAMILY SSF54106 106 156 1.7E-7 T 13-10-2018 CDG55_04750 9cb44070c8e8d190ba0c4f9000cb0c82 157 Gene3D G3DSA:3.10.350.10 107 155 7.0E-14 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_07865 659721057d974fca33b5b2c05d24358a 331 Pfam PF02885 Glycosyl transferase family, helical bundle domain 24 80 1.2E-15 T 13-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_07865 659721057d974fca33b5b2c05d24358a 331 Pfam PF00591 Glycosyl transferase family, a/b domain 108 327 1.3E-13 T 13-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_07865 659721057d974fca33b5b2c05d24358a 331 SUPERFAMILY SSF52418 86 330 4.32E-63 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_07865 659721057d974fca33b5b2c05d24358a 331 Gene3D G3DSA:1.20.970.10 14 82 7.1E-25 T 13-10-2018 CDG55_07865 659721057d974fca33b5b2c05d24358a 331 SUPERFAMILY SSF47648 22 82 4.71E-16 T 13-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_07865 659721057d974fca33b5b2c05d24358a 331 Gene3D G3DSA:3.40.1030.10 85 331 6.3E-60 T 13-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 CDG55_14305 8e88f1baf57ea108deeb1fb6b00796c6 165 Gene3D G3DSA:3.30.1490.190 106 164 1.1E-12 T 13-10-2018 CDG55_14305 8e88f1baf57ea108deeb1fb6b00796c6 165 Gene3D G3DSA:1.10.10.10 17 105 5.0E-31 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_14305 8e88f1baf57ea108deeb1fb6b00796c6 165 Pfam PF01475 Ferric uptake regulator family 36 153 2.1E-10 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CDG55_14305 8e88f1baf57ea108deeb1fb6b00796c6 165 SUPERFAMILY SSF46785 31 159 2.13E-25 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_13865 4db27db93cd696a6431a0d2d38ce06af 306 Gene3D G3DSA:1.10.443.10 120 300 9.5E-70 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_13865 4db27db93cd696a6431a0d2d38ce06af 306 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 17 306 55.153 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CDG55_13865 4db27db93cd696a6431a0d2d38ce06af 306 Pfam PF00589 Phage integrase family 123 291 9.2E-52 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_13865 4db27db93cd696a6431a0d2d38ce06af 306 SUPERFAMILY SSF56349 23 298 9.71E-61 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_13865 4db27db93cd696a6431a0d2d38ce06af 306 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 22 100 3.9E-14 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDG55_13865 4db27db93cd696a6431a0d2d38ce06af 306 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 19 306 56.323 T 13-10-2018 IPR023009 Tyrosine recombinase XerC/XerD CDG55_13865 4db27db93cd696a6431a0d2d38ce06af 306 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 24 305 1.8E-109 T 13-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 CDG55_13865 4db27db93cd696a6431a0d2d38ce06af 306 Gene3D G3DSA:1.10.150.130 18 109 4.5E-16 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 Pfam PF00384 Molybdopterin oxidoreductase 567 628 4.3E-8 T 13-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 Gene3D G3DSA:2.40.40.20 799 889 2.5E-5 T 13-10-2018 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 SMART SM00929 88 128 1.8E-17 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 SUPERFAMILY SSF50692 800 878 3.16E-8 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 SUPERFAMILY SSF53706 219 679 1.06E-80 T 13-10-2018 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 2.0E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 SUPERFAMILY SSF54292 1 77 1.52E-19 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 645 6.4E-197 T 13-10-2018 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 126 6.6E-14 T 13-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 Gene3D G3DSA:3.40.50.740 496 679 5.9E-16 T 13-10-2018 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 Gene3D G3DSA:3.10.20.740 1 128 8.0E-29 T 13-10-2018 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 SUPERFAMILY SSF54862 82 211 6.28E-31 T 13-10-2018 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 Gene3D G3DSA:2.20.25.90 221 275 2.9E-13 T 13-10-2018 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 77 2.5E-11 T 13-10-2018 CDG55_04345 33f7e1e94d33b5106276a115cff61eec 894 SMART SM00926 221 275 1.2E-11 T 13-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 SUPERFAMILY SSF56014 631 802 9.95E-50 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PIRSF PIRSF037149 1 836 0.0 T 13-10-2018 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 Gene3D G3DSA:3.30.413.10 629 821 8.8E-34 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 630 746 9.2E-16 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 SUPERFAMILY SSF55124 500 639 1.47E-23 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00397 Sirohaem Fe-binding site signature 634 652 2.0E-6 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00397 Sirohaem Fe-binding site signature 677 695 2.0E-6 T 13-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 280 9.0E-49 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 98 116 1.4E-13 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 229 245 1.4E-13 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 256 278 1.4E-13 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.4E-13 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 558 621 1.2E-9 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 SUPERFAMILY SSF51905 2 186 8.42E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 Gene3D G3DSA:3.50.50.60 4 278 8.3E-85 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 Pfam PF04324 BFD-like [2Fe-2S] binding domain 421 469 1.8E-8 T 13-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 Gene3D G3DSA:1.10.10.1100 421 475 3.3E-10 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 143 168 1.6E-8 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 278 1.6E-8 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 101 110 1.6E-8 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 230 244 1.6E-8 T 13-10-2018 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 SUPERFAMILY SSF51905 145 305 1.47E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 3 798 0.0 T 13-10-2018 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 CDG55_09080 009e3dc2d31242876a0a00e7cd4591a7 848 Gene3D G3DSA:3.50.50.60 106 241 8.3E-85 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Gene3D G3DSA:3.30.230.70 1 231 6.5E-75 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Gene3D G3DSA:3.30.1370.10 552 623 2.0E-19 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SUPERFAMILY SSF55666 146 237 5.33E-30 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SUPERFAMILY SSF50249 622 696 3.67E-20 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Pfam PF01138 3' exoribonuclease family, domain 1 18 145 5.1E-18 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Pfam PF01138 3' exoribonuclease family, domain 1 326 458 7.4E-20 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SUPERFAMILY SSF55666 452 550 2.38E-28 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SUPERFAMILY SSF54791 558 642 2.58E-22 T 13-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 5 695 29.754 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 12 693 0.0 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 PIRSF PIRSF005499 3 698 4.7E-283 T 13-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Gene3D G3DSA:3.30.230.70 234 551 3.0E-110 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SMART SM00316 622 692 2.9E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SMART SM00322 554 619 3.2E-13 T 13-10-2018 IPR004087 K Homology domain GO:0003676 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Pfam PF03725 3' exoribonuclease family, domain 2 148 211 9.4E-15 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Pfam PF03725 3' exoribonuclease family, domain 2 461 529 1.7E-5 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SUPERFAMILY SSF54211 299 490 1.37E-45 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 322 6.1E-20 T 13-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Gene3D G3DSA:2.40.50.140 624 696 4.1E-29 T 13-10-2018 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SUPERFAMILY SSF54211 3 145 6.58E-44 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 SUPERFAMILY SSF46915 240 323 2.01E-17 T 13-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Pfam PF00575 S1 RNA binding domain 621 692 8.7E-18 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_13230 f7e3635b97231b9443566bef5fb0f57a 698 Pfam PF00013 KH domain 559 615 8.7E-12 T 13-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 CDG55_14605 82316f8fac8be0ac4960e98a9d0ff5bb 103 SMART SM00530 21 74 8.3E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_14605 82316f8fac8be0ac4960e98a9d0ff5bb 103 SUPERFAMILY SSF47413 11 70 6.28E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_14605 82316f8fac8be0ac4960e98a9d0ff5bb 103 Pfam PF01381 Helix-turn-helix 22 69 2.4E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_14605 82316f8fac8be0ac4960e98a9d0ff5bb 103 Gene3D G3DSA:1.10.260.40 9 81 3.8E-18 T 13-10-2018 CDG55_09660 27ae622f1e7d03d5a2a8e33e5d2b9db2 333 SUPERFAMILY SSF51679 7 329 2.09E-85 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 CDG55_09660 27ae622f1e7d03d5a2a8e33e5d2b9db2 333 Gene3D G3DSA:3.20.20.30 4 332 4.1E-95 T 13-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 CDG55_09660 27ae622f1e7d03d5a2a8e33e5d2b9db2 333 Pfam PF00296 Luciferase-like monooxygenase 22 296 3.3E-39 T 13-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 CDG55_09660 27ae622f1e7d03d5a2a8e33e5d2b9db2 333 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 329 5.1E-126 T 13-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 CDG55_05855 864432f66be9ad464ddb1e6dac55a894 95 Pfam PF05164 Cell division protein ZapA 7 78 4.5E-13 T 13-10-2018 IPR007838 Cell division protein ZapA-like CDG55_05855 864432f66be9ad464ddb1e6dac55a894 95 Gene3D G3DSA:1.10.20.30 1 46 8.4E-9 T 13-10-2018 CDG55_05855 864432f66be9ad464ddb1e6dac55a894 95 SUPERFAMILY SSF102829 6 90 5.23E-15 T 13-10-2018 IPR036192 Cell division protein ZapA-like superfamily CDG55_01995 d797cabebe09d30afa2f129e184181cd 454 Pfam PF07690 Major Facilitator Superfamily 15 349 2.5E-37 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_01995 d797cabebe09d30afa2f129e184181cd 454 Gene3D G3DSA:3.30.70.100 385 448 2.2E-8 T 13-10-2018 CDG55_01995 d797cabebe09d30afa2f129e184181cd 454 Gene3D G3DSA:1.20.1250.20 2 384 3.4E-68 T 13-10-2018 CDG55_01995 d797cabebe09d30afa2f129e184181cd 454 SUPERFAMILY SSF103473 6 384 1.96E-53 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_06030 4e2c185932d9fe535612a2dc84760c71 184 SUPERFAMILY SSF55620 2 181 9.64E-74 T 13-10-2018 CDG55_06030 4e2c185932d9fe535612a2dc84760c71 184 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 3 180 1.4E-71 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CDG55_06030 4e2c185932d9fe535612a2dc84760c71 184 Gene3D G3DSA:3.30.1130.10 51 183 2.5E-59 T 13-10-2018 CDG55_06030 4e2c185932d9fe535612a2dc84760c71 184 Pfam PF01227 GTP cyclohydrolase I 4 180 8.9E-73 T 13-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CDG55_06030 4e2c185932d9fe535612a2dc84760c71 184 Gene3D G3DSA:1.10.286.10 1 49 1.1E-17 T 13-10-2018 CDG55_06030 4e2c185932d9fe535612a2dc84760c71 184 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 181 35.143 T 13-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 CDG55_05910 b4341fdcde8408ca1b4166b9496153b3 134 SUPERFAMILY SSF52980 7 105 3.65E-21 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_05910 b4341fdcde8408ca1b4166b9496153b3 134 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 8 108 5.9E-27 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CDG55_05910 b4341fdcde8408ca1b4166b9496153b3 134 Pfam PF02021 Uncharacterised protein family UPF0102 12 102 1.7E-24 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CDG55_05910 b4341fdcde8408ca1b4166b9496153b3 134 Gene3D G3DSA:3.40.1350.10 11 132 3.8E-30 T 13-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 CDG55_05910 b4341fdcde8408ca1b4166b9496153b3 134 Hamap MF_00048 UPF0102 protein YraN [yraN]. 5 116 20.534 T 13-10-2018 IPR003509 Uncharacterised protein family UPF0102 CDG55_07825 ada20e55da2cb1331fdd4a468e51a701 585 Pfam PF00437 Type II/IV secretion system protein 214 474 6.4E-78 T 13-10-2018 IPR001482 Type II/IV secretion system protein CDG55_07825 ada20e55da2cb1331fdd4a468e51a701 585 Gene3D G3DSA:3.40.50.300 311 583 1.3E-104 T 13-10-2018 CDG55_07825 ada20e55da2cb1331fdd4a468e51a701 585 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 66 162 2.4E-10 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal CDG55_07825 ada20e55da2cb1331fdd4a468e51a701 585 SUPERFAMILY SSF160246 43 160 1.73E-7 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily CDG55_07825 ada20e55da2cb1331fdd4a468e51a701 585 Gene3D G3DSA:3.30.450.90 175 307 5.5E-42 T 13-10-2018 CDG55_07825 ada20e55da2cb1331fdd4a468e51a701 585 SMART SM00382 335 477 0.0015 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_07825 ada20e55da2cb1331fdd4a468e51a701 585 SUPERFAMILY SSF52540 193 582 1.74E-95 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 SUPERFAMILY SSF46785 1 113 1.6E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 SUPERFAMILY SSF53850 92 289 1.02E-38 T 13-10-2018 CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 Pfam PF03466 LysR substrate binding domain 90 286 1.7E-40 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 4.9E-19 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 Gene3D G3DSA:3.40.190.290 92 291 3.7E-37 T 13-10-2018 CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-8 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_00750 631c969b43d2f97d78e2a56d8ea263e7 292 Gene3D G3DSA:1.10.10.10 1 90 3.4E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07430 e20e0ab423bb81e4709c012265fbcb76 252 SUPERFAMILY SSF88713 1 250 3.93E-99 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDG55_07430 e20e0ab423bb81e4709c012265fbcb76 252 Pfam PF03746 LamB/YcsF family 3 240 2.0E-98 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 CDG55_07430 e20e0ab423bb81e4709c012265fbcb76 252 Gene3D G3DSA:3.20.20.370 1 251 2.9E-101 T 13-10-2018 CDG55_07430 e20e0ab423bb81e4709c012265fbcb76 252 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 1 245 43.706 T 13-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 CDG55_15060 c8c5d506a7f30a7f2ca65555767dc06b 116 Pfam PF04342 Putative member of DMT superfamily (DUF486) 8 112 9.0E-40 T 13-10-2018 IPR007437 Protein of unknown function DUF486 CDG55_15060 c8c5d506a7f30a7f2ca65555767dc06b 116 PIRSF PIRSF021239 1 115 9.6E-48 T 13-10-2018 IPR007437 Protein of unknown function DUF486 CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 SUPERFAMILY SSF55326 215 420 5.58E-61 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Gene3D G3DSA:3.40.50.880 964 1276 5.4E-130 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Gene3D G3DSA:3.90.650.10 800 963 3.5E-19 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Gene3D G3DSA:3.90.650.10 415 599 4.0E-59 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 SUPERFAMILY SSF55326 611 808 1.81E-66 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Gene3D G3DSA:1.10.8.750 147 207 3.7E-28 T 13-10-2018 CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Gene3D G3DSA:3.30.1330.10 208 414 4.3E-42 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 SMART SM01211 1021 1275 7.0E-146 T 13-10-2018 CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1021 1275 7.1E-102 T 13-10-2018 CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 SUPERFAMILY SSF82697 1 145 6.28E-32 T 13-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 SUPERFAMILY SSF56042 815 1014 6.58E-41 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Gene3D G3DSA:3.30.1330.10 608 798 3.8E-27 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1276 20.202 T 13-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 5 1274 0.0 T 13-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 SUPERFAMILY SSF56042 421 648 2.54E-50 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 SUPERFAMILY SSF109736 149 214 1.22E-21 T 13-10-2018 CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 SUPERFAMILY SSF52317 1018 1275 4.58E-91 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Pfam PF02769 AIR synthase related protein, C-terminal domain 861 951 2.6E-7 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CDG55_10220 4af2a4b52e3fa62d89619efee02f5b6e 1276 Pfam PF02769 AIR synthase related protein, C-terminal domain 424 582 1.0E-30 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 Gene3D G3DSA:2.60.260.20 256 366 7.9E-29 T 13-10-2018 CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 PRINTS PR00625 DnaJ domain signature 7 25 7.2E-34 T 13-10-2018 IPR001623 DnaJ domain CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 PRINTS PR00625 DnaJ domain signature 25 40 7.2E-34 T 13-10-2018 IPR001623 DnaJ domain CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 PRINTS PR00625 DnaJ domain signature 62 81 7.2E-34 T 13-10-2018 IPR001623 DnaJ domain CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 PRINTS PR00625 DnaJ domain signature 42 62 7.2E-34 T 13-10-2018 IPR001623 DnaJ domain CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 Pfam PF00226 DnaJ domain 5 67 6.6E-30 T 13-10-2018 IPR001623 DnaJ domain CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 SUPERFAMILY SSF49493 115 264 3.53E-20 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 Gene3D G3DSA:1.10.287.110 1 111 8.6E-39 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 371 41.295 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 SMART SM00271 4 62 1.7E-35 T 13-10-2018 IPR001623 DnaJ domain CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 SUPERFAMILY SSF57938 136 211 6.8E-22 T 13-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 SUPERFAMILY SSF49493 259 345 1.27E-22 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 350 1.5E-140 T 13-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 Pfam PF00684 DnaJ central domain 149 209 2.8E-14 T 13-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 Pfam PF01556 DnaJ C terminal domain 123 334 2.6E-41 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 SUPERFAMILY SSF46565 1 109 1.83E-37 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CDG55_01360 bdb9879033a63d91114f9aafb6e75fff 372 Gene3D G3DSA:2.10.230.10 149 213 7.6E-21 T 13-10-2018 CDG55_03870 b80750c9f555db3f48244aaa37d2502b 183 Gene3D G3DSA:3.10.20.80 14 87 2.3E-29 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDG55_03870 b80750c9f555db3f48244aaa37d2502b 183 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 13 182 29.023 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDG55_03870 b80750c9f555db3f48244aaa37d2502b 183 SUPERFAMILY SSF55200 95 183 3.14E-32 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 CDG55_03870 b80750c9f555db3f48244aaa37d2502b 183 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 19 88 2.5E-29 T 13-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDG55_03870 b80750c9f555db3f48244aaa37d2502b 183 SUPERFAMILY SSF54364 17 90 1.02E-27 T 13-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDG55_03870 b80750c9f555db3f48244aaa37d2502b 183 Gene3D G3DSA:3.30.110.10 88 183 1.0E-36 T 13-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 CDG55_03870 b80750c9f555db3f48244aaa37d2502b 183 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 19 182 4.1E-66 T 13-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 CDG55_03870 b80750c9f555db3f48244aaa37d2502b 183 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 95 180 1.9E-36 T 13-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 Gene3D G3DSA:3.90.226.10 42 297 1.9E-73 T 13-10-2018 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 SUPERFAMILY SSF52096 43 296 6.81E-76 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 178 196 5.2E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 215 232 5.2E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 266 275 5.2E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 244 255 5.2E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 144 158 5.2E-39 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 42 297 7.3E-107 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 Pfam PF01039 Carboxyl transferase domain 115 257 9.1E-17 T 13-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 CDG55_11745 860fd804b1369edd09d58e0e9d887c22 298 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 3 296 34.912 T 13-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 SUPERFAMILY SSF52172 4 178 8.04E-20 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 SMART SM00448 3 116 1.2E-9 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 Pfam PF00072 Response regulator receiver domain 6 116 6.4E-15 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 Pfam PF00196 Bacterial regulatory proteins, luxR family 156 211 5.0E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 Gene3D G3DSA:3.40.50.12740 5 217 1.0E-39 T 13-10-2018 CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 SMART SM00421 154 211 4.2E-16 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 187 7.4E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 199 7.4E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_06935 7d903c91f276d17f1c36035f2db7adf0 217 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 171 7.4E-9 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_11445 a9099aeaa1f502688cec89fb9755a30d 168 Pfam PF03734 L,D-transpeptidase catalytic domain 10 160 2.3E-13 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDG55_11445 a9099aeaa1f502688cec89fb9755a30d 168 SUPERFAMILY SSF141523 5 160 6.93E-22 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CDG55_11445 a9099aeaa1f502688cec89fb9755a30d 168 Gene3D G3DSA:2.40.440.10 2 168 2.6E-23 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 Gene3D G3DSA:3.10.20.400 2 95 1.6E-38 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 146 236 1.3E-24 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 SUPERFAMILY SSF141734 4 118 1.12E-48 T 13-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 6 241 34.553 T 13-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 SUPERFAMILY SSF101386 144 240 4.58E-22 T 13-10-2018 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 30 104 2.4E-34 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 Gene3D G3DSA:1.10.287.1080 142 242 2.2E-27 T 13-10-2018 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 4 108 32.312 T 13-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 143 236 19.383 T 13-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 149 239 8.0E-13 T 13-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 CDG55_13305 cb42516bb7cb08cf20abb84dd4f8aeba 255 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 53 107 6.0E-26 T 13-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 CDG55_14290 1d0d10a5525b3548b82810b810660d2e 291 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 45 286 1.2E-40 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14290 1d0d10a5525b3548b82810b810660d2e 291 Gene3D G3DSA:1.20.120.220 102 291 1.8E-59 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14290 1d0d10a5525b3548b82810b810660d2e 291 SUPERFAMILY SSF81336 103 285 1.83E-41 T 13-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14290 1d0d10a5525b3548b82810b810660d2e 291 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 291 15.711 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14290 1d0d10a5525b3548b82810b810660d2e 291 Pfam PF00119 ATP synthase A chain 55 285 4.9E-55 T 13-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_05060 3771b48d4f2574844977516d5a5b2c9f 243 SUPERFAMILY SSF55729 5 226 1.54E-80 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_05060 3771b48d4f2574844977516d5a5b2c9f 243 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 243 77.382 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 CDG55_05060 3771b48d4f2574844977516d5a5b2c9f 243 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 30 214 1.3E-54 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 CDG55_05060 3771b48d4f2574844977516d5a5b2c9f 243 Gene3D G3DSA:2.30.210.20 2 59 2.6E-20 T 13-10-2018 CDG55_05060 3771b48d4f2574844977516d5a5b2c9f 243 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 34 203 1.2E-63 T 13-10-2018 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 MetaCyc: PWY-7801 CDG55_05060 3771b48d4f2574844977516d5a5b2c9f 243 Gene3D G3DSA:3.40.630.70 60 238 1.4E-57 T 13-10-2018 CDG55_14620 7cfd21a203a43103dd5244dab1b651e8 119 Pfam PF01042 Endoribonuclease L-PSP 15 117 1.7E-23 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CDG55_14620 7cfd21a203a43103dd5244dab1b651e8 119 Gene3D G3DSA:3.30.1330.40 2 119 4.4E-35 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CDG55_14620 7cfd21a203a43103dd5244dab1b651e8 119 SUPERFAMILY SSF55298 11 118 1.57E-27 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 SUPERFAMILY SSF55681 2 253 3.48E-107 T 13-10-2018 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Pfam PF01411 tRNA synthetases class II (A) 5 565 1.5E-222 T 13-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Gene3D G3DSA:3.30.980.10 574 715 7.2E-49 T 13-10-2018 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 318 331 1.0E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 1.0E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 1.0E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 294 310 1.0E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 1.0E-31 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Gene3D G3DSA:3.30.930.10 1 250 1.1E-121 T 13-10-2018 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Gene3D G3DSA:3.30.54.20 636 695 7.2E-49 T 13-10-2018 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 SUPERFAMILY SSF55186 565 727 1.22E-47 T 13-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 665 714 6.6E-17 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 SMART SM00863 665 714 2.3E-19 T 13-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 SUPERFAMILY SSF50447 466 564 4.59E-18 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Gene3D G3DSA:2.40.30.130 471 564 3.2E-10 T 13-10-2018 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Gene3D G3DSA:3.10.310.40 782 890 4.4E-26 T 13-10-2018 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 871 0.0 T 13-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 891 193.87 T 13-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 SUPERFAMILY SSF101353 254 475 1.44E-59 T 13-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 CDG55_09795 a896b811425ca316ebee513a0a81af3e 891 Pfam PF02272 DHHA1 domain 751 888 5.7E-24 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 22 181 25.838 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 45 172 8.5E-41 T 13-10-2018 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 SUPERFAMILY SSF56762 221 595 7.59E-123 T 13-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 207 595 41.168 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 13 595 69.412 T 13-10-2018 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 SUPERFAMILY SSF143243 22 225 7.85E-59 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 Gene3D G3DSA:1.10.645.20 210 595 1.6E-143 T 13-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 211 595 9.0E-163 T 13-10-2018 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 101 155 3.0E-25 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 325 595 1.5E-99 T 13-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 Gene3D G3DSA:3.30.460.80 4 153 3.2E-35 T 13-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04330 caedb409d1fd8688f04bbdf873a98a85 595 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 46 173 1.4E-41 T 13-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_08340 8d2b8466b7a588115846b5734fb18bbd 337 Gene3D G3DSA:3.40.1190.20 11 314 4.9E-80 T 13-10-2018 IPR029056 Ribokinase-like CDG55_08340 8d2b8466b7a588115846b5734fb18bbd 337 PRINTS PR00990 Ribokinase signature 57 76 6.0E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CDG55_08340 8d2b8466b7a588115846b5734fb18bbd 337 PRINTS PR00990 Ribokinase signature 206 221 6.0E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CDG55_08340 8d2b8466b7a588115846b5734fb18bbd 337 PRINTS PR00990 Ribokinase signature 244 255 6.0E-5 T 13-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 CDG55_08340 8d2b8466b7a588115846b5734fb18bbd 337 SUPERFAMILY SSF53613 1 318 2.96E-76 T 13-10-2018 IPR029056 Ribokinase-like CDG55_08340 8d2b8466b7a588115846b5734fb18bbd 337 Pfam PF00294 pfkB family carbohydrate kinase 48 318 6.5E-56 T 13-10-2018 IPR011611 Carbohydrate kinase PfkB CDG55_08340 8d2b8466b7a588115846b5734fb18bbd 337 Gene3D G3DSA:3.30.1110.10 14 133 4.9E-80 T 13-10-2018 CDG55_05645 bb190fb64cd65a18b176f99509b37681 228 Pfam PF00849 RNA pseudouridylate synthase 29 178 2.8E-25 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_05645 bb190fb64cd65a18b176f99509b37681 228 SUPERFAMILY SSF55120 20 227 1.6E-58 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_05645 bb190fb64cd65a18b176f99509b37681 228 Gene3D G3DSA:3.30.2350.10 19 227 1.2E-62 T 13-10-2018 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 473 52.223 T 13-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 212 2.9E-13 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 Gene3D G3DSA:2.40.30.10 330 434 2.5E-34 T 13-10-2018 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 Pfam PF00009 Elongation factor Tu GTP binding domain 24 213 1.5E-45 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 433 2.2E-196 T 13-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 SUPERFAMILY SSF50465 333 433 1.55E-31 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 SUPERFAMILY SSF52540 16 236 4.87E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 Gene3D G3DSA:2.40.30.10 240 327 2.1E-28 T 13-10-2018 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 PRINTS PR00315 GTP-binding elongation factor signature 87 95 6.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 PRINTS PR00315 GTP-binding elongation factor signature 107 117 6.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 PRINTS PR00315 GTP-binding elongation factor signature 160 169 6.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 PRINTS PR00315 GTP-binding elongation factor signature 26 39 6.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 PRINTS PR00315 GTP-binding elongation factor signature 123 134 6.5E-14 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 Gene3D G3DSA:3.40.50.300 1 239 7.7E-77 T 13-10-2018 CDG55_06235 4ed556e19117c6c74efdd3c6d186029b 537 SUPERFAMILY SSF50447 241 328 8.25E-24 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Pfam PF00271 Helicase conserved C-terminal domain 442 545 9.8E-18 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 SUPERFAMILY SSF46600 634 672 4.32E-11 T 13-10-2018 IPR036876 UVR domain superfamily CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 SMART SM00487 11 427 2.5E-28 T 13-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 7 668 0.0 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Pfam PF04851 Type III restriction enzyme, res subunit 17 94 5.7E-11 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Gene3D G3DSA:4.10.860.10 615 674 2.6E-9 T 13-10-2018 CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Pfam PF12344 Ultra-violet resistance protein B 553 593 5.0E-20 T 13-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Gene3D G3DSA:3.40.50.300 416 590 2.1E-48 T 13-10-2018 CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Pfam PF02151 UvrB/uvrC motif 638 668 6.0E-9 T 13-10-2018 IPR001943 UVR domain GO:0005515 CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Gene3D G3DSA:3.40.50.300 269 415 1.8E-52 T 13-10-2018 CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 SUPERFAMILY SSF52540 35 586 1.86E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 SMART SM00490 461 547 9.0E-21 T 13-10-2018 IPR001650 Helicase, C-terminal CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Hamap MF_00204 UvrABC system protein B [uvrB]. 5 670 43.065 T 13-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 Gene3D G3DSA:3.40.50.300 1 236 3.5E-76 T 13-10-2018 CDG55_06140 04a33b4cf51fa6f7ab5900d05f0a78f0 674 SUPERFAMILY SSF52540 5 416 1.36E-142 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09220 722771194e74eb62f0527e1a08b35098 160 Pfam PF13511 Domain of unknown function (DUF4124) 17 62 9.6E-11 T 13-10-2018 IPR025392 Domain of unknown function DUF4124 CDG55_10630 dbc00b1ecd2460e1f4ca778122c99da2 446 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 445 6.6E-246 T 13-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 CDG55_10630 dbc00b1ecd2460e1f4ca778122c99da2 446 SUPERFAMILY SSF55909 4 446 3.24E-204 T 13-10-2018 CDG55_10630 dbc00b1ecd2460e1f4ca778122c99da2 446 Gene3D G3DSA:3.75.10.20 1 446 8.0E-209 T 13-10-2018 IPR037031 Succinylarginine dihydrolase superfamily GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 CDG55_10630 dbc00b1ecd2460e1f4ca778122c99da2 446 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 446 59.043 T 13-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 CDG55_10630 dbc00b1ecd2460e1f4ca778122c99da2 446 Pfam PF04996 Succinylarginine dihydrolase 4 445 1.9E-218 T 13-10-2018 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23 CDG55_08820 f4da8b7aa30f93224e547bbc0ecc1479 411 Gene3D G3DSA:1.20.1250.20 8 399 5.9E-29 T 13-10-2018 CDG55_08820 f4da8b7aa30f93224e547bbc0ecc1479 411 Pfam PF07690 Major Facilitator Superfamily 21 350 5.5E-19 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_08820 f4da8b7aa30f93224e547bbc0ecc1479 411 SUPERFAMILY SSF103473 13 405 2.09E-37 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_03090 8159af0d9903fe6b965aaa59ae2c19d3 515 SUPERFAMILY SSF52540 16 383 3.88E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03090 8159af0d9903fe6b965aaa59ae2c19d3 515 Gene3D G3DSA:3.40.50.300 202 379 1.3E-20 T 13-10-2018 CDG55_03090 8159af0d9903fe6b965aaa59ae2c19d3 515 Gene3D G3DSA:3.40.50.300 5 92 1.5E-10 T 13-10-2018 CDG55_03090 8159af0d9903fe6b965aaa59ae2c19d3 515 Pfam PF05872 Bacterial protein of unknown function (DUF853) 11 514 3.9E-230 T 13-10-2018 IPR033186 Helicase HerA-like C-terminal CDG55_03090 8159af0d9903fe6b965aaa59ae2c19d3 515 SMART SM00382 25 329 0.0092 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_04645 f4a1c692f3584095a5485b52aee4c976 219 Pfam PF13500 AAA domain 6 196 5.0E-35 T 13-10-2018 CDG55_04645 f4a1c692f3584095a5485b52aee4c976 219 SUPERFAMILY SSF52540 4 199 9.57E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04645 f4a1c692f3584095a5485b52aee4c976 219 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 3 206 25.465 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CDG55_04645 f4a1c692f3584095a5485b52aee4c976 219 Gene3D G3DSA:3.40.50.300 2 206 8.2E-55 T 13-10-2018 CDG55_04645 f4a1c692f3584095a5485b52aee4c976 219 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 7 176 5.2E-51 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CDG55_04645 f4a1c692f3584095a5485b52aee4c976 219 PIRSF PIRSF006755 2 207 1.0E-58 T 13-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 CDG55_11000 6d21d60ceb0ced584cd890b078e3dcb3 123 Gene3D G3DSA:1.10.10.10 1 121 1.9E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_11000 6d21d60ceb0ced584cd890b078e3dcb3 123 Pfam PF01638 HxlR-like helix-turn-helix 23 110 1.9E-22 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type CDG55_11000 6d21d60ceb0ced584cd890b078e3dcb3 123 SUPERFAMILY SSF46785 7 119 8.03E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_10760 99f34843e338ee4c70f9d04c54883b33 197 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 2 183 2.0E-21 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 CDG55_10760 99f34843e338ee4c70f9d04c54883b33 197 Pfam PF04973 Nicotinamide mononucleotide transporter 3 180 1.5E-44 T 13-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 CDG55_04390 ffb61c908a31493188a8a4f7f78ac445 97 Gene3D G3DSA:2.40.50.140 1 87 5.3E-16 T 13-10-2018 CDG55_04390 ffb61c908a31493188a8a4f7f78ac445 97 SUPERFAMILY SSF50249 4 67 8.81E-13 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_04390 ffb61c908a31493188a8a4f7f78ac445 97 SMART SM00357 7 68 2.2E-7 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CDG55_04390 ffb61c908a31493188a8a4f7f78ac445 97 Pfam PF00313 'Cold-shock' DNA-binding domain 7 66 1.7E-11 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_04390 ffb61c908a31493188a8a4f7f78ac445 97 PIRSF PIRSF002599 1 91 3.2E-12 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CDG55_05010 739ee78dcadaa7d6b1420209380d6e0a 409 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 364 5.6E-32 T 13-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal CDG55_05010 739ee78dcadaa7d6b1420209380d6e0a 409 Gene3D G3DSA:3.40.47.10 258 408 5.0E-45 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_05010 739ee78dcadaa7d6b1420209380d6e0a 409 SMART SM00825 Beta-ketoacyl synthase 4 409 1.3E-13 T 13-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CDG55_05010 739ee78dcadaa7d6b1420209380d6e0a 409 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 1.3E-40 T 13-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal CDG55_05010 739ee78dcadaa7d6b1420209380d6e0a 409 SUPERFAMILY SSF53901 2 251 4.32E-58 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_05010 739ee78dcadaa7d6b1420209380d6e0a 409 Gene3D G3DSA:3.40.47.10 1 252 4.8E-59 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_05010 739ee78dcadaa7d6b1420209380d6e0a 409 SUPERFAMILY SSF53901 213 407 1.65E-62 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 5 117 30.823 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 SUPERFAMILY SSF50104 6 118 8.02E-47 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 Pfam PF01245 Ribosomal protein L19 7 116 7.2E-51 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 PIRSF PIRSF002191 1 123 1.3E-51 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 PRINTS PR00061 Ribosomal protein L19 signature 7 36 2.6E-41 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 PRINTS PR00061 Ribosomal protein L19 signature 37 66 2.6E-41 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 PRINTS PR00061 Ribosomal protein L19 signature 91 116 2.6E-41 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 Gene3D G3DSA:2.30.30.790 13 121 2.4E-15 T 13-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_02740 789cb90b17a13a5ac136fb938b2cad8f 123 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 7 116 2.3E-50 T 13-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_08205 d1e87d185d2efa3704081662d6848948 154 Pfam PF01047 MarR family 51 102 7.2E-6 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_08205 d1e87d185d2efa3704081662d6848948 154 Gene3D G3DSA:1.10.10.10 5 153 7.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_08205 d1e87d185d2efa3704081662d6848948 154 SUPERFAMILY SSF46785 13 152 3.11E-27 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_08205 d1e87d185d2efa3704081662d6848948 154 SMART SM00347 38 138 3.9E-13 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_04955 671e56b4b269b75dd1639ca0a4214347 404 Gene3D G3DSA:1.10.150.130 92 215 1.7E-13 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_04955 671e56b4b269b75dd1639ca0a4214347 404 Pfam PF13356 Arm DNA-binding domain 6 89 4.9E-16 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CDG55_04955 671e56b4b269b75dd1639ca0a4214347 404 Pfam PF00589 Phage integrase family 246 382 3.3E-17 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_04955 671e56b4b269b75dd1639ca0a4214347 404 SUPERFAMILY SSF56349 101 393 3.24E-46 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_04955 671e56b4b269b75dd1639ca0a4214347 404 Gene3D G3DSA:3.30.160.390 4 91 3.1E-29 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CDG55_04955 671e56b4b269b75dd1639ca0a4214347 404 Gene3D G3DSA:1.10.443.10 216 395 2.8E-18 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_01630 84d5aba0e203b8f4e0dc361659c741bf 167 SUPERFAMILY SSF158442 10 159 3.27E-41 T 13-10-2018 IPR023380 DsbB-like superfamily CDG55_01630 84d5aba0e203b8f4e0dc361659c741bf 167 Gene3D G3DSA:1.20.1550.10 3 167 1.2E-48 T 13-10-2018 IPR023380 DsbB-like superfamily CDG55_01630 84d5aba0e203b8f4e0dc361659c741bf 167 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 1 165 22.514 T 13-10-2018 IPR022920 Disulphide bond formation protein DsbB CDG55_01630 84d5aba0e203b8f4e0dc361659c741bf 167 Pfam PF02600 Disulfide bond formation protein DsbB 6 157 6.8E-40 T 13-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 CDG55_09895 50ef1e3a11c68f55df533e5ce1a9b919 301 PIRSF PIRSF000401 1 299 1.2E-82 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CDG55_09895 50ef1e3a11c68f55df533e5ce1a9b919 301 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 297 31.515 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CDG55_09895 50ef1e3a11c68f55df533e5ce1a9b919 301 SUPERFAMILY SSF53335 63 288 4.03E-37 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_09895 50ef1e3a11c68f55df533e5ce1a9b919 301 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 2 298 1.4E-87 T 13-10-2018 CDG55_09895 50ef1e3a11c68f55df533e5ce1a9b919 301 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 291 6.5E-83 T 13-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 CDG55_09895 50ef1e3a11c68f55df533e5ce1a9b919 301 Gene3D G3DSA:3.40.50.150 102 300 9.9E-54 T 13-10-2018 CDG55_00845 d66e50e53cc238f1e0ed70ac81bc75d9 109 Pfam PF14020 Protein of unknown function (DUF4236) 3 57 2.3E-21 T 13-10-2018 IPR025330 Domain of unknown function DUF4236 CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 SMART SM00387 330 441 1.6E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 Gene3D G3DSA:1.10.287.130 173 283 1.1E-18 T 13-10-2018 CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 Pfam PF00512 His Kinase A (phospho-acceptor) domain 223 282 2.6E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 400 418 8.3E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 PRINTS PR00344 Bacterial sensor protein C-terminal signature 368 382 8.3E-7 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 SUPERFAMILY SSF55874 274 439 5.37E-31 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 SMART SM00388 222 284 6.0E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 332 438 3.4E-16 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 Gene3D G3DSA:3.30.565.10 291 440 1.6E-28 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11150 67ecc9b0759dc97a6c10a522da23d09d 441 SUPERFAMILY SSF47384 206 282 6.28E-13 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 Gene3D G3DSA:3.90.190.20 318 453 2.1E-31 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 SUPERFAMILY SSF53623 97 312 5.49E-52 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 Gene3D G3DSA:3.40.1190.10 91 317 1.5E-57 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 Gene3D G3DSA:3.40.50.720 1 90 1.6E-33 T 13-10-2018 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 SUPERFAMILY SSF51984 1 90 5.62E-21 T 13-10-2018 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 Pfam PF01225 Mur ligase family, catalytic domain 2 99 1.0E-16 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 SUPERFAMILY SSF53244 314 451 5.49E-39 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 453 57.981 T 13-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 Pfam PF08245 Mur ligase middle domain 108 295 2.5E-22 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 452 1.7E-207 T 13-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 CDG55_15065 3d4a897a5bbd6669a6a1e28d6e658ab7 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 363 1.1E-10 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 Pfam PF00425 chorismate binding enzyme 221 480 7.3E-93 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 PRINTS PR00095 Anthranilate synthase component I signature 422 436 3.8E-23 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 PRINTS PR00095 Anthranilate synthase component I signature 328 341 3.8E-23 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 PRINTS PR00095 Anthranilate synthase component I signature 437 451 3.8E-23 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 PRINTS PR00095 Anthranilate synthase component I signature 342 355 3.8E-23 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 Pfam PF04715 Anthranilate synthase component I, N terminal region 27 173 6.4E-37 T 13-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 Gene3D G3DSA:3.60.120.10 1 494 1.6E-176 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 488 3.4E-163 T 13-10-2018 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_13725 80e505d50cf284f56e93de94cf3e6770 497 SUPERFAMILY SSF56322 15 490 9.03E-153 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CDG55_13515 93a74cf1834931f6fd92543efba31be3 184 SUPERFAMILY SSF69118 6 176 4.45E-46 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDG55_13515 93a74cf1834931f6fd92543efba31be3 184 Gene3D G3DSA:1.20.1290.10 14 178 1.1E-45 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDG55_13515 93a74cf1834931f6fd92543efba31be3 184 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 58 92 1.4E-10 T 13-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDG55_13515 93a74cf1834931f6fd92543efba31be3 184 Pfam PF02627 Carboxymuconolactone decarboxylase family 44 121 3.7E-8 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDG55_05355 39da429f5828f76086b0aec592590f75 592 Pfam PF09423 PhoD-like phosphatase 146 555 1.3E-121 T 13-10-2018 IPR018946 Alkaline phosphatase D-related CDG55_05355 39da429f5828f76086b0aec592590f75 592 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 47 136 2.3E-32 T 13-10-2018 IPR032093 Phospholipase D, N-terminal CDG55_05355 39da429f5828f76086b0aec592590f75 592 SUPERFAMILY SSF56300 138 559 4.27E-34 T 13-10-2018 CDG55_05355 39da429f5828f76086b0aec592590f75 592 Gene3D G3DSA:2.60.40.380 38 139 1.1E-35 T 13-10-2018 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 CDG55_07120 5bee6b28add07d7f9c5c9ec240d81960 262 SUPERFAMILY SSF52833 164 261 3.22E-10 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_07120 5bee6b28add07d7f9c5c9ec240d81960 262 Gene3D G3DSA:3.40.30.10 159 262 7.6E-17 T 13-10-2018 CDG55_07120 5bee6b28add07d7f9c5c9ec240d81960 262 Pfam PF13417 Glutathione S-transferase, N-terminal domain 165 261 4.1E-10 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_07120 5bee6b28add07d7f9c5c9ec240d81960 262 Pfam PF13417 Glutathione S-transferase, N-terminal domain 41 116 2.6E-16 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_07120 5bee6b28add07d7f9c5c9ec240d81960 262 SUPERFAMILY SSF52833 38 135 7.21E-19 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_07120 5bee6b28add07d7f9c5c9ec240d81960 262 Gene3D G3DSA:3.40.30.10 34 142 2.5E-16 T 13-10-2018 CDG55_00370 4e48bcb47b82985737e85e24abb3d7c2 280 Pfam PF00905 Penicillin binding protein transpeptidase domain 67 265 3.0E-32 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDG55_00370 4e48bcb47b82985737e85e24abb3d7c2 280 SUPERFAMILY SSF56601 55 272 8.28E-33 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_00370 4e48bcb47b82985737e85e24abb3d7c2 280 Gene3D G3DSA:3.40.710.10 29 277 5.2E-85 T 13-10-2018 CDG55_01040 4e48bcb47b82985737e85e24abb3d7c2 280 Pfam PF00905 Penicillin binding protein transpeptidase domain 67 265 3.0E-32 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDG55_01040 4e48bcb47b82985737e85e24abb3d7c2 280 SUPERFAMILY SSF56601 55 272 8.28E-33 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_01040 4e48bcb47b82985737e85e24abb3d7c2 280 Gene3D G3DSA:3.40.710.10 29 277 5.2E-85 T 13-10-2018 CDG55_14600 5fcaa2a2ec94adc6b3a2224cdedfa21d 985 Gene3D G3DSA:1.10.443.10 485 716 1.7E-14 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_14600 5fcaa2a2ec94adc6b3a2224cdedfa21d 985 SUPERFAMILY SSF56349 508 644 7.06E-9 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_14600 5fcaa2a2ec94adc6b3a2224cdedfa21d 985 Pfam PF00589 Phage integrase family 497 644 2.7E-8 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_03115 ce0bb906af4bde1f65273e0f3eab0f4f 200 Pfam PF00573 Ribosomal protein L4/L1 family 11 196 4.7E-61 T 13-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 CDG55_03115 ce0bb906af4bde1f65273e0f3eab0f4f 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 11 196 5.4E-71 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03115 ce0bb906af4bde1f65273e0f3eab0f4f 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 2 200 32.437 T 13-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03115 ce0bb906af4bde1f65273e0f3eab0f4f 200 Gene3D G3DSA:3.40.1370.10 3 199 1.9E-64 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_03115 ce0bb906af4bde1f65273e0f3eab0f4f 200 SUPERFAMILY SSF52166 7 196 7.33E-68 T 13-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_04915 d22f095e842d4049785532a94c2974a5 370 TIGRFAM TIGR03033 phage_rel_nuc: putative phage-type endonuclease 56 211 5.0E-38 T 13-10-2018 IPR017482 Putative phage-type endonuclease CDG55_04915 d22f095e842d4049785532a94c2974a5 370 Gene3D G3DSA:3.90.320.10 56 264 6.6E-37 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal CDG55_04915 d22f095e842d4049785532a94c2974a5 370 SUPERFAMILY SSF52980 55 246 4.4E-33 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_04915 d22f095e842d4049785532a94c2974a5 370 Pfam PF09588 YqaJ-like viral recombinase domain 61 203 2.8E-35 T 13-10-2018 IPR019080 YqaJ viral recombinase CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 SUPERFAMILY SSF52172 5 129 5.69E-40 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 227 2.5E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 Pfam PF00072 Response regulator receiver domain 6 119 4.4E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 4 228 1.8E-101 T 13-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 SMART SM00862 152 227 6.3E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 SMART SM00448 4 118 3.7E-41 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 SUPERFAMILY SSF46894 130 228 3.97E-29 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 Gene3D G3DSA:3.40.50.2300 2 130 2.8E-36 T 13-10-2018 CDG55_01580 cf8a93254f6eb52867c4fc578279aee0 236 Gene3D G3DSA:1.10.10.10 131 231 3.9E-34 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_02490 cc8e26db3e45a44c614fea57a9108ddd 360 PIRSF PIRSF001455 10 359 1.0E-102 T 13-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CDG55_02490 cc8e26db3e45a44c614fea57a9108ddd 360 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 15 352 2.1E-112 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CDG55_02490 cc8e26db3e45a44c614fea57a9108ddd 360 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 1 354 69.053 T 13-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CDG55_02490 cc8e26db3e45a44c614fea57a9108ddd 360 Gene3D G3DSA:1.20.1090.10 172 360 5.7E-73 T 13-10-2018 CDG55_02490 cc8e26db3e45a44c614fea57a9108ddd 360 Pfam PF01761 3-dehydroquinate synthase 66 323 2.3E-106 T 13-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 CDG55_02490 cc8e26db3e45a44c614fea57a9108ddd 360 SUPERFAMILY SSF56796 3 354 4.84E-112 T 13-10-2018 CDG55_02490 cc8e26db3e45a44c614fea57a9108ddd 360 Gene3D G3DSA:3.40.50.1970 1 171 2.4E-64 T 13-10-2018 CDG55_14910 3343e66659fe5f66797dd607cb023d04 267 Gene3D G3DSA:1.10.3720.10 55 259 1.2E-27 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_14910 3343e66659fe5f66797dd607cb023d04 267 SUPERFAMILY SSF161098 65 248 1.57E-34 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_14910 3343e66659fe5f66797dd607cb023d04 267 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 256 4.1E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_02650 bd8c6929e0d64c98fc9fbaff4d64a98f 544 Pfam PF04932 O-Antigen ligase 192 343 1.0E-13 T 13-10-2018 IPR007016 O-antigen ligase-related CDG55_02650 bd8c6929e0d64c98fc9fbaff4d64a98f 544 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 367 531 1.0E-14 T 13-10-2018 IPR021797 Virulence factor membrane-bound polymerase, C-terminal CDG55_02650 bd8c6929e0d64c98fc9fbaff4d64a98f 544 Pfam PF15864 Protein glycosylation ligase 153 178 2.9E-9 T 13-10-2018 IPR031726 Protein glycosylation ligase domain CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 SUPERFAMILY SSF56024 326 502 1.18E-56 T 13-10-2018 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 Gene3D G3DSA:3.30.870.10 510 692 1.3E-68 T 13-10-2018 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 PIRSF PIRSF015589 2 692 1.2E-278 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 Pfam PF02503 Polyphosphate kinase middle domain 134 331 8.5E-62 T 13-10-2018 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 18 689 4.0E-287 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 SUPERFAMILY SSF56024 510 690 3.36E-70 T 13-10-2018 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 Hamap MF_00347 Polyphosphate kinase [ppk]. 16 687 27.726 T 13-10-2018 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 Gene3D G3DSA:3.30.870.10 326 509 5.9E-71 T 13-10-2018 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 SUPERFAMILY SSF140356 16 120 3.27E-36 T 13-10-2018 IPR036832 Polyphosphate kinase N-terminal domain superfamily KEGG: 00190+2.7.4.1 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 Pfam PF13089 Polyphosphate kinase N-terminal domain 19 124 1.5E-34 T 13-10-2018 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 Pfam PF13090 Polyphosphate kinase C-terminal domain 340 688 5.7E-154 T 13-10-2018 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 Gene3D G3DSA:3.30.1840.10 12 323 4.2E-104 T 13-10-2018 IPR036830 Polyphosphate kinase middle domain superfamily KEGG: 00190+2.7.4.1 CDG55_05525 640dc8dcbee4078163b002dd7d0ff77b 692 SUPERFAMILY SSF143724 122 323 2.94E-65 T 13-10-2018 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 413 22.22 T 13-10-2018 IPR020823 Cell division protein FtsA CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 SUPERFAMILY SSF53067 199 380 3.55E-34 T 13-10-2018 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 Gene3D G3DSA:3.30.1490.110 83 170 2.3E-82 T 13-10-2018 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 SMART SM00842 8 197 2.2E-61 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 Pfam PF14450 Cell division protein FtsA 9 177 1.0E-8 T 13-10-2018 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 SUPERFAMILY SSF53067 8 198 1.21E-36 T 13-10-2018 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 8 379 8.0E-91 T 13-10-2018 IPR020823 Cell division protein FtsA CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 Gene3D G3DSA:3.30.420.40 198 351 2.3E-82 T 13-10-2018 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 PIRSF PIRSF003101 1 420 6.0E-102 T 13-10-2018 IPR020823 Cell division protein FtsA CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 161 1.6E-7 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 Gene3D G3DSA:3.90.640.10 236 299 2.3E-82 T 13-10-2018 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 Gene3D G3DSA:3.30.420.40 11 374 2.3E-82 T 13-10-2018 CDG55_01800 e6b48a91e5f55f9d76aca88f38764567 420 Pfam PF14450 Cell division protein FtsA 208 377 1.3E-18 T 13-10-2018 CDG55_07165 9e5942d72c7174d0afe22f4245fa3d75 264 Pfam PF13672 Protein phosphatase 2C 44 222 1.0E-7 T 13-10-2018 CDG55_07165 9e5942d72c7174d0afe22f4245fa3d75 264 SUPERFAMILY SSF81606 10 256 1.11E-24 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CDG55_07165 9e5942d72c7174d0afe22f4245fa3d75 264 Gene3D G3DSA:3.60.40.10 40 255 8.0E-25 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CDG55_00745 5acb55b80cc3c5280e1075e8d31d14d3 355 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 24 353 1.5E-100 T 13-10-2018 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 CDG55_00745 5acb55b80cc3c5280e1075e8d31d14d3 355 Pfam PF03601 Conserved hypothetical protein 698 24 333 2.1E-97 T 13-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 SUPERFAMILY SSF51905 6 394 1.19E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 290 305 3.9E-20 T 13-10-2018 CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 159 174 3.9E-20 T 13-10-2018 CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.9E-20 T 13-10-2018 CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 305 321 3.9E-20 T 13-10-2018 CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 Pfam PF01494 FAD binding domain 6 353 3.1E-31 T 13-10-2018 IPR002938 FAD-binding domain GO:0071949 CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 Gene3D G3DSA:3.30.9.50 80 279 2.5E-89 T 13-10-2018 CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 Gene3D G3DSA:3.50.50.60 6 347 2.5E-89 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05880 b0017e154d8bf708c98122794fd50d73 410 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 398 1.5E-102 T 13-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 Gene3D G3DSA:3.30.565.10 250 403 1.2E-36 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 331 345 5.4E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 403 5.4E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 384 5.4E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 Gene3D G3DSA:1.10.287.130 136 245 3.7E-12 T 13-10-2018 CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 SMART SM00387 292 406 1.5E-24 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 SUPERFAMILY SSF47384 165 248 3.53E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 SUPERFAMILY SSF55874 237 404 7.07E-38 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 297 404 5.9E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 Pfam PF00512 His Kinase A (phospho-acceptor) domain 179 247 2.0E-6 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_11945 088f041f36fe6abb950fc33863bc8287 423 SMART SM00388 179 247 4.9E-9 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 384 1.9E-91 T 13-10-2018 IPR015929 Aconitase B, swivel GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 Gene3D G3DSA:3.20.19.10 162 363 1.1E-71 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 862 0.0 T 13-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 Gene3D G3DSA:3.30.499.10 407 534 8.3E-145 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 SUPERFAMILY SSF52016 162 374 2.16E-64 T 13-10-2018 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 SUPERFAMILY SSF53732 381 866 1.7E-143 T 13-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 SUPERFAMILY SSF74778 2 159 4.32E-67 T 13-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 Gene3D G3DSA:3.40.1060.10 387 689 8.3E-145 T 13-10-2018 IPR015932 Aconitase, domain 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 Pfam PF11791 Aconitate B N-terminal domain 4 156 5.5E-66 T 13-10-2018 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 Gene3D G3DSA:1.25.40.310 1 161 9.6E-67 T 13-10-2018 IPR036288 Aconitase B, HEAT-like domain superfamily GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 PIRSF PIRSF036687 1 868 0.0 T 13-10-2018 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 Gene3D G3DSA:3.30.499.10 691 874 2.3E-69 T 13-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 CDG55_09210 1704f8fd72f49920320a3ebbfd8a8b01 879 Pfam PF00330 Aconitase family (aconitate hydratase) 477 827 2.8E-39 T 13-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 CDG55_10165 89f739c83666d4b8a23ff2a8f81d4341 273 Gene3D G3DSA:2.160.10.10 87 257 1.4E-54 T 13-10-2018 CDG55_10165 89f739c83666d4b8a23ff2a8f81d4341 273 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4 272 1.6E-145 T 13-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 CDG55_10165 89f739c83666d4b8a23ff2a8f81d4341 273 Gene3D G3DSA:1.10.166.10 1 70 4.5E-28 T 13-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 CDG55_10165 89f739c83666d4b8a23ff2a8f81d4341 273 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 175 209 1.1E-12 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_10165 89f739c83666d4b8a23ff2a8f81d4341 273 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 272 56.785 T 13-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 CDG55_10165 89f739c83666d4b8a23ff2a8f81d4341 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 133 166 0.0014 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_10165 89f739c83666d4b8a23ff2a8f81d4341 273 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 3 69 1.9E-24 T 13-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 CDG55_10165 89f739c83666d4b8a23ff2a8f81d4341 273 SUPERFAMILY SSF51161 2 256 4.99E-73 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_05155 122377feeb4558708a03ac0da84e3f21 106 Pfam PF03658 RnfH family Ubiquitin 5 84 3.9E-24 T 13-10-2018 IPR005346 RnfH protein CDG55_05155 122377feeb4558708a03ac0da84e3f21 106 SUPERFAMILY SSF54285 5 76 7.85E-19 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CDG55_05155 122377feeb4558708a03ac0da84e3f21 106 Hamap MF_00460 Protein RnfH [rnfH]. 4 92 21.155 T 13-10-2018 IPR005346 RnfH protein CDG55_05155 122377feeb4558708a03ac0da84e3f21 106 Gene3D G3DSA:3.10.20.280 1 86 6.5E-25 T 13-10-2018 IPR037021 RnfH superfamily CDG55_01420 aae44d409a5d144373e973556ffd5090 150 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 5 150 36.477 T 13-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 CDG55_01420 aae44d409a5d144373e973556ffd5090 150 PIRSF PIRSF006173 1 150 7.1E-65 T 13-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 CDG55_01420 aae44d409a5d144373e973556ffd5090 150 Pfam PF03692 Putative zinc- or iron-chelating domain 27 95 2.4E-7 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PIRSF PIRSF004557 9 445 1.7E-124 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 SUPERFAMILY SSF103491 9 430 7.59E-129 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 321 343 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 121 144 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 376 394 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 273 292 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 28 46 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 80 100 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 155 180 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 408 426 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 PRINTS PR00303 Preprotein translocase SecY subunit signature 181 204 6.5E-94 T 13-10-2018 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 Hamap MF_01465 Protein translocase subunit SecY [secY]. 15 439 28.644 T 13-10-2018 IPR026593 Protein translocase subunit SecY CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 Gene3D G3DSA:1.10.3370.10 12 435 2.9E-158 T 13-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 Pfam PF00344 SecY translocase 81 423 1.8E-113 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDG55_03210 934e2a829c9e8005436b86a5ea445bfe 450 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 26 435 2.5E-127 T 13-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 9 235 3.9E-116 T 13-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 24 326 3.7E-143 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 253 326 1.6E-29 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 250 328 1.0E-36 T 13-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 Gene3D G3DSA:1.10.8.60 182 255 2.5E-32 T 13-10-2018 CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 Gene3D G3DSA:1.10.10.10 257 331 9.2E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 SUPERFAMILY SSF46785 257 330 3.67E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 331 174.684 T 13-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 Gene3D G3DSA:3.40.50.300 18 181 2.0E-37 T 13-10-2018 CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 SMART SM00382 51 178 9.9E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_10240 accfe30a85ef4cc937a307e438b02b5b 331 SUPERFAMILY SSF52540 20 252 1.31E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 Gene3D G3DSA:3.30.390.30 436 561 1.4E-46 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 SUPERFAMILY SSF55424 436 559 5.15E-33 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 Gene3D G3DSA:3.50.50.60 102 419 4.2E-119 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 SUPERFAMILY SSF51905 100 457 1.81E-51 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 Gene3D G3DSA:3.30.70.100 1 69 4.4E-20 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PRINTS PR00945 Mercuric reductase class II signature 237 254 2.5E-92 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PRINTS PR00945 Mercuric reductase class II signature 534 553 2.5E-92 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PRINTS PR00945 Mercuric reductase class II signature 292 307 2.5E-92 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PRINTS PR00945 Mercuric reductase class II signature 13 23 2.5E-92 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PRINTS PR00945 Mercuric reductase class II signature 110 128 2.5E-92 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PRINTS PR00945 Mercuric reductase class II signature 272 289 2.5E-92 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PRINTS PR00945 Mercuric reductase class II signature 145 164 2.5E-92 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PRINTS PR00945 Mercuric reductase class II signature 469 489 2.5E-92 T 13-10-2018 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 437 545 2.1E-29 T 13-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 Gene3D G3DSA:3.50.50.60 245 361 4.2E-119 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 SUPERFAMILY SSF55008 2 70 2.62E-17 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 TIGRFAM TIGR02053 MerA: mercury(II) reductase 100 561 4.7E-187 T 13-10-2018 IPR021179 Mercury(II) reductase GO:0016152|GO:0016491|GO:0045340|GO:0050660|GO:0050661|GO:0050787|GO:0055114 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 PIRSF PIRSF000350 1 561 1.4E-264 T 13-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 Pfam PF00403 Heavy-metal-associated domain 3 43 8.1E-10 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDG55_01135 bfb3da38c29b5e036102c4f95e731f87 561 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 100 418 3.7E-64 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 170 185 2.2E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 187 209 2.2E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 220 232 2.2E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 55 77 2.2E-24 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 14 407 1.2E-112 T 13-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 SUPERFAMILY SSF55174 333 408 1.91E-8 T 13-10-2018 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 Gene3D G3DSA:3.40.50.620 13 226 5.1E-76 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 Gene3D G3DSA:3.10.290.10 336 408 1.7E-6 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 Pfam PF00579 tRNA synthetases class I (W and Y) 39 320 6.7E-76 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 11 408 45.495 T 13-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 SUPERFAMILY SSF52374 14 319 8.96E-95 T 13-10-2018 CDG55_01240 7fdf98e5e9d6c417173adde763308e0e 410 Gene3D G3DSA:1.10.240.10 227 335 2.9E-30 T 13-10-2018 CDG55_03470 a195061482afc74be356256b52f1ae8d 421 Gene3D G3DSA:3.40.605.10 15 417 1.1E-163 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_03470 a195061482afc74be356256b52f1ae8d 421 PIRSF PIRSF000151 1 421 9.6E-179 T 13-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 CDG55_03470 a195061482afc74be356256b52f1ae8d 421 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 16 410 1.9E-151 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDG55_03470 a195061482afc74be356256b52f1ae8d 421 SUPERFAMILY SSF53720 8 420 4.97E-118 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_03470 a195061482afc74be356256b52f1ae8d 421 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 8 420 41.051 T 13-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDG55_03470 a195061482afc74be356256b52f1ae8d 421 Gene3D G3DSA:3.40.309.10 229 378 1.1E-163 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CDG55_03470 a195061482afc74be356256b52f1ae8d 421 Pfam PF00171 Aldehyde dehydrogenase family 313 377 2.1E-6 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_03470 a195061482afc74be356256b52f1ae8d 421 Pfam PF00171 Aldehyde dehydrogenase family 14 286 5.1E-16 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_05315 d59d69fea04adb57819228feba4ef01e 176 PIRSF PIRSF011484 1 176 1.3E-60 T 13-10-2018 IPR009822 YaeQ CDG55_05315 d59d69fea04adb57819228feba4ef01e 176 Gene3D G3DSA:3.10.640.10 1 176 6.5E-70 T 13-10-2018 IPR038590 YaeQ superfamily CDG55_05315 d59d69fea04adb57819228feba4ef01e 176 SMART SM01322 1 174 5.4E-98 T 13-10-2018 IPR009822 YaeQ CDG55_05315 d59d69fea04adb57819228feba4ef01e 176 SUPERFAMILY SSF52980 2 175 3.75E-64 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_05315 d59d69fea04adb57819228feba4ef01e 176 Pfam PF07152 YaeQ protein 1 172 1.2E-67 T 13-10-2018 IPR009822 YaeQ CDG55_07145 d1041c383dfefd3e823c4fad8b32f01a 417 Gene3D G3DSA:3.40.710.30 13 406 2.8E-100 T 13-10-2018 CDG55_07145 d1041c383dfefd3e823c4fad8b32f01a 417 SUPERFAMILY SSF56601 35 384 2.19E-68 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_07145 d1041c383dfefd3e823c4fad8b32f01a 417 Pfam PF00144 Beta-lactamase 35 388 7.1E-53 T 13-10-2018 IPR001466 Beta-lactamase-related CDG55_13215 c895672250f0ed2ad73a345924f56ac7 108 Gene3D G3DSA:1.10.1660.10 20 108 2.1E-22 T 13-10-2018 CDG55_13215 c895672250f0ed2ad73a345924f56ac7 108 Pfam PF13591 MerR HTH family regulatory protein 27 106 1.1E-15 T 13-10-2018 CDG55_11135 0df0707616bc1a680be57c2877eaca0f 395 Pfam PF00909 Ammonium Transporter Family 8 386 4.0E-83 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 CDG55_11135 0df0707616bc1a680be57c2877eaca0f 395 SUPERFAMILY SSF111352 2 370 1.96E-93 T 13-10-2018 CDG55_11135 0df0707616bc1a680be57c2877eaca0f 395 Gene3D G3DSA:1.10.3430.10 1 394 4.3E-95 T 13-10-2018 IPR029020 Ammonium/urea transporter CDG55_10370 18bc0dc1c092220bd4f824aaa71cbfff 228 SMART SM00382 34 223 2.0E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_10370 18bc0dc1c092220bd4f824aaa71cbfff 228 SUPERFAMILY SSF52540 5 225 1.56E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10370 18bc0dc1c092220bd4f824aaa71cbfff 228 Pfam PF00005 ABC transporter 26 174 3.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_10370 18bc0dc1c092220bd4f824aaa71cbfff 228 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 5 223 1.4E-94 T 13-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 CDG55_10370 18bc0dc1c092220bd4f824aaa71cbfff 228 Gene3D G3DSA:3.40.50.300 3 225 2.1E-66 T 13-10-2018 CDG55_09490 ff04309d8e76b832b79ec2d8bc345fbf 394 PRINTS PR01021 OMPA domain signature 273 295 5.0E-11 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_09490 ff04309d8e76b832b79ec2d8bc345fbf 394 PRINTS PR01021 OMPA domain signature 318 334 5.0E-11 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_09490 ff04309d8e76b832b79ec2d8bc345fbf 394 PRINTS PR01021 OMPA domain signature 303 318 5.0E-11 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_09490 ff04309d8e76b832b79ec2d8bc345fbf 394 Pfam PF00691 OmpA family 273 360 6.2E-18 T 13-10-2018 IPR006665 OmpA-like domain CDG55_09490 ff04309d8e76b832b79ec2d8bc345fbf 394 SUPERFAMILY SSF103088 253 372 5.1E-29 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_09490 ff04309d8e76b832b79ec2d8bc345fbf 394 Gene3D G3DSA:3.30.1330.60 265 379 5.9E-30 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 SMART SM00448 2 115 2.0E-30 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 Gene3D G3DSA:3.40.50.12740 2 209 6.0E-61 T 13-10-2018 CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 5.9E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 5.9E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 5.9E-7 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 SUPERFAMILY SSF52172 2 132 9.11E-34 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 203 8.5E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 SMART SM00421 146 203 7.3E-15 T 13-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 Pfam PF00072 Response regulator receiver domain 4 116 5.3E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_13895 d0381c15ee9d84ed8432da66143504d0 211 SUPERFAMILY SSF46894 137 209 3.74E-19 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_05085 cf0fc973e7ed7a5a5cb2cbaa1532c4a6 90 Gene3D G3DSA:3.30.1070.10 21 88 1.1E-20 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 CDG55_05085 cf0fc973e7ed7a5a5cb2cbaa1532c4a6 90 Hamap MF_00262 Cell division topological specificity factor [minE]. 4 90 15.506 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CDG55_05085 cf0fc973e7ed7a5a5cb2cbaa1532c4a6 90 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 9 88 2.6E-20 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CDG55_05085 cf0fc973e7ed7a5a5cb2cbaa1532c4a6 90 SUPERFAMILY SSF55229 37 89 1.26E-11 T 13-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 CDG55_05085 cf0fc973e7ed7a5a5cb2cbaa1532c4a6 90 Pfam PF03776 Septum formation topological specificity factor MinE 17 87 1.0E-19 T 13-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 CDG55_05180 f64be112b74045167ddecc04c441b5b6 225 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 224 1.1E-73 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CDG55_05180 f64be112b74045167ddecc04c441b5b6 225 PIRSF PIRSF004848 1 225 9.8E-76 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CDG55_05180 f64be112b74045167ddecc04c441b5b6 225 Pfam PF01168 Alanine racemase, N-terminal domain 14 224 4.8E-29 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_05180 f64be112b74045167ddecc04c441b5b6 225 Gene3D G3DSA:3.20.20.10 3 225 1.3E-81 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_05180 f64be112b74045167ddecc04c441b5b6 225 SUPERFAMILY SSF51419 8 222 7.98E-77 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_05180 f64be112b74045167ddecc04c441b5b6 225 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 6 223 31.082 T 13-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 CDG55_07625 47857a5d12db2dfe2fd66d4a06f2bb4f 311 Pfam PF00005 ABC transporter 21 165 6.8E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_07625 47857a5d12db2dfe2fd66d4a06f2bb4f 311 SUPERFAMILY SSF52540 4 230 1.01E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_07625 47857a5d12db2dfe2fd66d4a06f2bb4f 311 SMART SM00382 30 213 4.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_07625 47857a5d12db2dfe2fd66d4a06f2bb4f 311 Gene3D G3DSA:3.40.50.300 1 238 1.7E-63 T 13-10-2018 CDG55_01030 c8601f27664fa410f3bc88d3dd6a20b6 275 Gene3D G3DSA:1.10.10.60 217 273 7.9E-13 T 13-10-2018 CDG55_01030 c8601f27664fa410f3bc88d3dd6a20b6 275 SUPERFAMILY SSF46689 219 268 7.17E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_01030 c8601f27664fa410f3bc88d3dd6a20b6 275 Gene3D G3DSA:1.10.10.60 167 216 6.8E-9 T 13-10-2018 CDG55_01030 c8601f27664fa410f3bc88d3dd6a20b6 275 Pfam PF02311 AraC-like ligand binding domain 14 146 1.3E-19 T 13-10-2018 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 CDG55_01030 c8601f27664fa410f3bc88d3dd6a20b6 275 SUPERFAMILY SSF46689 171 217 5.38E-6 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_01030 c8601f27664fa410f3bc88d3dd6a20b6 275 SMART SM00342 183 265 3.3E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_01030 c8601f27664fa410f3bc88d3dd6a20b6 275 Pfam PF12833 Helix-turn-helix domain 193 266 7.2E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_01030 c8601f27664fa410f3bc88d3dd6a20b6 275 SUPERFAMILY SSF51215 19 149 3.01E-18 T 13-10-2018 IPR037923 Transcription regulator HTH-like CDG55_02330 cac234867fe1bfcf095d357209c85019 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 5 423 2.9E-202 T 13-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 CDG55_02330 cac234867fe1bfcf095d357209c85019 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 422 3.9E-148 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDG55_02330 cac234867fe1bfcf095d357209c85019 425 PIRSF PIRSF001434 1 425 1.3E-137 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDG55_02330 cac234867fe1bfcf095d357209c85019 425 Gene3D G3DSA:3.40.640.10 4 287 8.0E-103 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_02330 cac234867fe1bfcf095d357209c85019 425 Gene3D G3DSA:3.90.1150.10 291 425 7.5E-55 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_02330 cac234867fe1bfcf095d357209c85019 425 SUPERFAMILY SSF53383 4 423 2.93E-131 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_15085 313af40fe7910e59180f46417e11ba4d 373 SUPERFAMILY SSF56112 15 343 2.35E-59 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_15085 313af40fe7910e59180f46417e11ba4d 373 Gene3D G3DSA:3.90.1200.10 121 353 2.0E-61 T 13-10-2018 CDG55_15085 313af40fe7910e59180f46417e11ba4d 373 Gene3D G3DSA:3.30.200.20 15 116 3.8E-28 T 13-10-2018 CDG55_15085 313af40fe7910e59180f46417e11ba4d 373 Pfam PF01636 Phosphotransferase enzyme family 38 264 1.7E-42 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CDG55_08095 8679eee316e266b2d898913c4c420c45 205 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 59 3.6E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_08095 8679eee316e266b2d898913c4c420c45 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_08095 8679eee316e266b2d898913c4c420c45 205 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.2E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_08095 8679eee316e266b2d898913c4c420c45 205 SUPERFAMILY SSF46689 5 76 3.34E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_08095 8679eee316e266b2d898913c4c420c45 205 Gene3D G3DSA:1.10.357.10 2 169 1.9E-18 T 13-10-2018 CDG55_14920 d794cf862b11ef65b419c4798e1f599c 203 Pfam PF08362 YcdC-like protein, C-terminal region 60 203 4.1E-54 T 13-10-2018 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 CDG55_14920 d794cf862b11ef65b419c4798e1f599c 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 59 3.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14920 d794cf862b11ef65b419c4798e1f599c 203 Gene3D G3DSA:1.10.357.10 60 203 1.7E-44 T 13-10-2018 CDG55_14920 d794cf862b11ef65b419c4798e1f599c 203 SUPERFAMILY SSF46689 4 80 1.03E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_14920 d794cf862b11ef65b419c4798e1f599c 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 6.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14920 d794cf862b11ef65b419c4798e1f599c 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 6.3E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14920 d794cf862b11ef65b419c4798e1f599c 203 Gene3D G3DSA:1.10.10.60 1 59 1.7E-18 T 13-10-2018 CDG55_14920 d794cf862b11ef65b419c4798e1f599c 203 SUPERFAMILY SSF48498 77 203 2.19E-35 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 5.2E-86 T 13-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 2.1E-34 T 13-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 420 5.9E-26 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 Gene3D G3DSA:3.30.470.20 191 328 5.0E-58 T 13-10-2018 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 Gene3D G3DSA:3.90.600.10 329 428 4.8E-31 T 13-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 SMART SM01209 103 296 1.6E-140 T 13-10-2018 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 SUPERFAMILY SSF51246 328 423 1.1E-28 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 Gene3D G3DSA:3.30.1490.20 122 190 4.6E-28 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 SUPERFAMILY SSF52440 1 103 3.17E-36 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 422 1.7E-175 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 Gene3D G3DSA:3.40.50.20 2 95 3.8E-36 T 13-10-2018 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 422 42.863 T 13-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 SUPERFAMILY SSF56059 104 321 9.9E-67 T 13-10-2018 CDG55_09915 f6a24fdef375a73fcfa0411e080a0c0d 428 SMART SM01210 329 422 3.8E-44 T 13-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 CDG55_13785 61b0a13c5a3d12ba63ed8afd8ca59d99 246 Gene3D G3DSA:2.40.50.40 138 206 5.4E-11 T 13-10-2018 CDG55_13785 61b0a13c5a3d12ba63ed8afd8ca59d99 246 SMART SM00448 1 111 2.2E-32 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_13785 61b0a13c5a3d12ba63ed8afd8ca59d99 246 Gene3D G3DSA:3.40.50.2300 1 132 2.7E-37 T 13-10-2018 CDG55_13785 61b0a13c5a3d12ba63ed8afd8ca59d99 246 SMART SM00850 147 244 2.1E-26 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CDG55_13785 61b0a13c5a3d12ba63ed8afd8ca59d99 246 SUPERFAMILY SSF52172 1 177 2.13E-35 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_13785 61b0a13c5a3d12ba63ed8afd8ca59d99 246 Pfam PF04397 LytTr DNA-binding domain 150 243 1.1E-22 T 13-10-2018 IPR007492 LytTR DNA-binding domain GO:0003677 CDG55_13785 61b0a13c5a3d12ba63ed8afd8ca59d99 246 Pfam PF00072 Response regulator receiver domain 3 110 5.1E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Gene3D G3DSA:3.30.559.10 414 655 2.5E-78 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Gene3D G3DSA:4.10.320.10 345 396 3.2E-16 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Pfam PF02817 e3 binding domain 356 390 1.1E-11 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 SUPERFAMILY SSF51230 116 207 9.82E-20 T 13-10-2018 IPR011053 Single hybrid motif CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Gene3D G3DSA:2.40.50.100 226 303 9.5E-20 T 13-10-2018 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Gene3D G3DSA:2.40.50.100 2 78 3.4E-18 T 13-10-2018 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Gene3D G3DSA:2.40.50.100 118 195 5.0E-16 T 13-10-2018 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 SUPERFAMILY SSF47005 351 395 2.49E-11 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 SUPERFAMILY SSF52777 418 655 4.05E-73 T 13-10-2018 CDG55_01830 0a007112096b786f52890e30b7026e3a 655 SUPERFAMILY SSF51230 225 317 3.66E-21 T 13-10-2018 IPR011053 Single hybrid motif CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Pfam PF00364 Biotin-requiring enzyme 2 72 7.2E-18 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Pfam PF00364 Biotin-requiring enzyme 119 188 8.8E-16 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Pfam PF00364 Biotin-requiring enzyme 228 298 2.2E-17 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CDG55_01830 0a007112096b786f52890e30b7026e3a 655 SUPERFAMILY SSF51230 2 92 1.57E-20 T 13-10-2018 IPR011053 Single hybrid motif CDG55_01830 0a007112096b786f52890e30b7026e3a 655 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 429 654 5.0E-69 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 CDG55_03525 0e2c3ef10773f7414711adccff21aa61 543 SUPERFAMILY SSF56024 47 259 2.3E-44 T 13-10-2018 CDG55_03525 0e2c3ef10773f7414711adccff21aa61 543 SUPERFAMILY SSF56024 300 508 3.93E-32 T 13-10-2018 CDG55_03525 0e2c3ef10773f7414711adccff21aa61 543 Gene3D G3DSA:3.30.870.10 311 512 5.3E-39 T 13-10-2018 CDG55_03525 0e2c3ef10773f7414711adccff21aa61 543 Gene3D G3DSA:3.30.870.10 85 278 5.1E-39 T 13-10-2018 CDG55_03525 0e2c3ef10773f7414711adccff21aa61 543 Pfam PF13091 PLD-like domain 95 243 5.1E-18 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CDG55_03525 0e2c3ef10773f7414711adccff21aa61 543 Pfam PF13091 PLD-like domain 332 487 1.0E-21 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CDG55_03525 0e2c3ef10773f7414711adccff21aa61 543 SMART SM00155 434 461 4.1E-4 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDG55_03525 0e2c3ef10773f7414711adccff21aa61 543 SMART SM00155 184 211 0.0027 T 13-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 CDG55_10530 a53a668aa1c97005c3a6b8b1808cd040 146 PRINTS PR01438 Universal stress protein signature 123 145 4.2E-20 T 13-10-2018 IPR006015 Universal stress protein A CDG55_10530 a53a668aa1c97005c3a6b8b1808cd040 146 PRINTS PR01438 Universal stress protein signature 3 21 4.2E-20 T 13-10-2018 IPR006015 Universal stress protein A CDG55_10530 a53a668aa1c97005c3a6b8b1808cd040 146 PRINTS PR01438 Universal stress protein signature 105 117 4.2E-20 T 13-10-2018 IPR006015 Universal stress protein A CDG55_10530 a53a668aa1c97005c3a6b8b1808cd040 146 SUPERFAMILY SSF52402 1 145 1.42E-39 T 13-10-2018 CDG55_10530 a53a668aa1c97005c3a6b8b1808cd040 146 PIRSF PIRSF006276 1 146 1.4E-22 T 13-10-2018 IPR006015 Universal stress protein A CDG55_10530 a53a668aa1c97005c3a6b8b1808cd040 146 Pfam PF00582 Universal stress protein family 3 145 5.1E-34 T 13-10-2018 IPR006016 UspA CDG55_10530 a53a668aa1c97005c3a6b8b1808cd040 146 Gene3D G3DSA:3.40.50.620 1 146 3.9E-39 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_05960 0f5003e333c891d84d32ed0b78ecd7fb 531 SUPERFAMILY SSF52540 15 260 8.32E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05960 0f5003e333c891d84d32ed0b78ecd7fb 531 SMART SM00382 41 238 4.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_05960 0f5003e333c891d84d32ed0b78ecd7fb 531 SMART SM00382 313 505 3.3E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_05960 0f5003e333c891d84d32ed0b78ecd7fb 531 Gene3D G3DSA:3.40.50.300 13 270 2.5E-73 T 13-10-2018 CDG55_05960 0f5003e333c891d84d32ed0b78ecd7fb 531 Gene3D G3DSA:3.40.50.300 274 531 2.9E-78 T 13-10-2018 CDG55_05960 0f5003e333c891d84d32ed0b78ecd7fb 531 Pfam PF00005 ABC transporter 305 454 2.0E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_05960 0f5003e333c891d84d32ed0b78ecd7fb 531 SUPERFAMILY SSF52540 277 525 2.72E-62 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05960 0f5003e333c891d84d32ed0b78ecd7fb 531 Pfam PF00005 ABC transporter 33 188 1.6E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_03220 5a86afa68c1e359b3ac3238047e0d2fe 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.011 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03220 5a86afa68c1e359b3ac3238047e0d2fe 118 SUPERFAMILY SSF46946 2 114 8.11E-45 T 13-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 CDG55_03220 5a86afa68c1e359b3ac3238047e0d2fe 118 Pfam PF00416 Ribosomal protein S13/S18 3 62 5.7E-14 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03220 5a86afa68c1e359b3ac3238047e0d2fe 118 Pfam PF00416 Ribosomal protein S13/S18 65 108 9.7E-17 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03220 5a86afa68c1e359b3ac3238047e0d2fe 118 PIRSF PIRSF002134 1 118 1.3E-40 T 13-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03220 5a86afa68c1e359b3ac3238047e0d2fe 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 6.2E-53 T 13-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03220 5a86afa68c1e359b3ac3238047e0d2fe 118 Gene3D G3DSA:1.10.8.50 1 71 6.3E-26 T 13-10-2018 CDG55_03220 5a86afa68c1e359b3ac3238047e0d2fe 118 Gene3D G3DSA:4.10.910.10 72 118 3.8E-27 T 13-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_08580 869c1c72f4a995056eb30a92e57485c7 342 PIRSF PIRSF005632 1 342 1.7E-198 T 13-10-2018 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit CDG55_08580 869c1c72f4a995056eb30a92e57485c7 342 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 330 2.5E-37 T 13-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 CDG55_08580 869c1c72f4a995056eb30a92e57485c7 342 SUPERFAMILY SSF51726 7 341 3.53E-70 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CDG55_08580 869c1c72f4a995056eb30a92e57485c7 342 Gene3D G3DSA:3.20.20.210 1 342 4.9E-134 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CDG55_02570 9118dbe692430c2a369c84550bf5fedc 173 Pfam PF13302 Acetyltransferase (GNAT) domain 8 142 4.4E-8 T 13-10-2018 IPR000182 GNAT domain CDG55_02570 9118dbe692430c2a369c84550bf5fedc 173 SUPERFAMILY SSF55729 6 147 3.98E-13 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_02570 9118dbe692430c2a369c84550bf5fedc 173 Gene3D G3DSA:3.40.630.30 1 172 5.0E-31 T 13-10-2018 CDG55_09465 8d5eeb2379f252cae4fe15b9b5215a47 162 Gene3D G3DSA:3.40.30.10 1 162 4.9E-69 T 13-10-2018 CDG55_09465 8d5eeb2379f252cae4fe15b9b5215a47 162 PIRSF PIRSF000303 1 162 4.3E-66 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_09465 8d5eeb2379f252cae4fe15b9b5215a47 162 Pfam PF00255 Glutathione peroxidase 4 110 2.7E-39 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_09465 8d5eeb2379f252cae4fe15b9b5215a47 162 SUPERFAMILY SSF52833 3 159 1.9E-60 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_09465 8d5eeb2379f252cae4fe15b9b5215a47 162 PRINTS PR01011 Glutathione peroxidase family signature 57 73 2.3E-21 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_09465 8d5eeb2379f252cae4fe15b9b5215a47 162 PRINTS PR01011 Glutathione peroxidase family signature 22 39 2.3E-21 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_09465 8d5eeb2379f252cae4fe15b9b5215a47 162 PRINTS PR01011 Glutathione peroxidase family signature 123 132 2.3E-21 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_12350 43a6cf143948c3cc66980b9b84de70db 295 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 209 286 2.9E-13 T 13-10-2018 IPR006260 TonB/TolA, C-terminal CDG55_12350 43a6cf143948c3cc66980b9b84de70db 295 Gene3D G3DSA:3.30.1150.10 132 287 3.0E-20 T 13-10-2018 CDG55_12350 43a6cf143948c3cc66980b9b84de70db 295 SUPERFAMILY SSF74653 187 287 5.89E-19 T 13-10-2018 CDG55_12350 43a6cf143948c3cc66980b9b84de70db 295 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 207 273 1.6E-14 T 13-10-2018 IPR037682 TonB, C-terminal GO:0055085 CDG55_06570 6b7a1cf51d8369ec819a1c3e4bfa7c11 322 PIRSF PIRSF026166 1 322 2.7E-121 T 13-10-2018 IPR016833 Putative sodium bile acid cotransporter CDG55_06570 6b7a1cf51d8369ec819a1c3e4bfa7c11 322 Gene3D G3DSA:1.20.1530.20 2 320 1.5E-30 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CDG55_06570 6b7a1cf51d8369ec819a1c3e4bfa7c11 322 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 8 318 2.4E-90 T 13-10-2018 IPR016833 Putative sodium bile acid cotransporter CDG55_02270 916ba4f3f2cf37b5252888c607135773 125 Gene3D G3DSA:3.40.630.30 1 113 2.2E-16 T 13-10-2018 CDG55_02270 916ba4f3f2cf37b5252888c607135773 125 Pfam PF12568 Acetyltransferase (GNAT) domain 17 98 1.1E-9 T 13-10-2018 IPR000182 GNAT domain CDG55_02270 916ba4f3f2cf37b5252888c607135773 125 SUPERFAMILY SSF55729 20 111 9.95E-12 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 Gene3D G3DSA:1.20.1180.10 196 262 3.1E-25 T 13-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 4 262 43.611 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 Gene3D G3DSA:2.160.10.10 1 194 2.4E-61 T 13-10-2018 CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 SUPERFAMILY SSF51161 4 262 3.43E-80 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 7 261 1.1E-98 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 PIRSF PIRSF000456 3 262 1.9E-104 T 13-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 108 142 1.7E-6 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 7 38 9.3E-7 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_08890 d826b5ba6698d083464c513ed9ccdf25 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 179 261 3.5E-26 T 13-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 CDG55_02135 5b1bbc35be6f00b2903770ef714ee81a 116 SUPERFAMILY SSF47413 10 77 2.11E-17 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_02135 5b1bbc35be6f00b2903770ef714ee81a 116 Pfam PF13560 Helix-turn-helix domain 13 68 2.1E-13 T 13-10-2018 CDG55_02135 5b1bbc35be6f00b2903770ef714ee81a 116 SMART SM00530 16 71 2.2E-16 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_02135 5b1bbc35be6f00b2903770ef714ee81a 116 Gene3D G3DSA:1.10.260.40 10 87 3.6E-19 T 13-10-2018 CDG55_12735 96e0d0bae0bc2152e580869982b9eecd 466 SUPERFAMILY SSF56954 5 458 1.28E-91 T 13-10-2018 CDG55_12735 96e0d0bae0bc2152e580869982b9eecd 466 Gene3D G3DSA:1.20.1600.10 55 457 6.1E-108 T 13-10-2018 CDG55_12735 96e0d0bae0bc2152e580869982b9eecd 466 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 17 457 6.1E-87 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 CDG55_12735 96e0d0bae0bc2152e580869982b9eecd 466 Pfam PF02321 Outer membrane efflux protein 278 456 1.1E-26 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CDG55_12735 96e0d0bae0bc2152e580869982b9eecd 466 Pfam PF02321 Outer membrane efflux protein 65 248 2.0E-20 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CDG55_12735 96e0d0bae0bc2152e580869982b9eecd 466 Gene3D G3DSA:2.20.200.10 102 347 6.1E-108 T 13-10-2018 CDG55_08050 4cbd665f08ad6829e40eb42ac70d7b2e 295 SUPERFAMILY SSF110849 39 133 2.88E-28 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CDG55_08050 4cbd665f08ad6829e40eb42ac70d7b2e 295 SMART SM00470 39 131 3.4E-32 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CDG55_08050 4cbd665f08ad6829e40eb42ac70d7b2e 295 SUPERFAMILY SSF109709 124 232 1.73E-34 T 13-10-2018 CDG55_08050 4cbd665f08ad6829e40eb42ac70d7b2e 295 Gene3D G3DSA:3.90.1530.30 52 117 7.3E-28 T 13-10-2018 CDG55_08050 4cbd665f08ad6829e40eb42ac70d7b2e 295 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 37 215 4.1E-58 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CDG55_08050 4cbd665f08ad6829e40eb42ac70d7b2e 295 Pfam PF02195 ParB-like nuclease domain 40 131 4.0E-27 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CDG55_08050 4cbd665f08ad6829e40eb42ac70d7b2e 295 Gene3D G3DSA:1.10.10.2830 118 231 2.6E-35 T 13-10-2018 CDG55_08125 beaaa6b3905ca6154daa1078bb2acd5c 237 SUPERFAMILY SSF52141 15 235 8.72E-89 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDG55_08125 beaaa6b3905ca6154daa1078bb2acd5c 237 Pfam PF03167 Uracil DNA glycosylase superfamily 66 222 5.3E-25 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDG55_08125 beaaa6b3905ca6154daa1078bb2acd5c 237 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 17 234 40.012 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDG55_08125 beaaa6b3905ca6154daa1078bb2acd5c 237 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 18 227 9.1E-84 T 13-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDG55_08125 beaaa6b3905ca6154daa1078bb2acd5c 237 SMART SM00986 62 223 5.9E-35 T 13-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDG55_08125 beaaa6b3905ca6154daa1078bb2acd5c 237 SMART SM00987 62 223 5.9E-35 T 13-10-2018 CDG55_08125 beaaa6b3905ca6154daa1078bb2acd5c 237 Gene3D G3DSA:3.40.470.10 1 237 2.9E-98 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDG55_14285 94b12579d392b38dd17e2e4359e55ecc 81 Pfam PF00137 ATP synthase subunit C 10 72 8.8E-9 T 13-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 CDG55_14285 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.2E-7 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14285 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.2E-7 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14285 94b12579d392b38dd17e2e4359e55ecc 81 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.2E-7 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14285 94b12579d392b38dd17e2e4359e55ecc 81 Gene3D G3DSA:1.20.20.10 1 77 3.0E-27 T 13-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14285 94b12579d392b38dd17e2e4359e55ecc 81 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 1.2E-28 T 13-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CDG55_14285 94b12579d392b38dd17e2e4359e55ecc 81 SUPERFAMILY SSF81333 2 78 4.05E-18 T 13-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily CDG55_14285 94b12579d392b38dd17e2e4359e55ecc 81 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 13.695 T 13-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 SUPERFAMILY SSF53671 2 301 4.19E-103 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 300 7.9E-117 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 297 3.1E-51 T 13-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 Gene3D G3DSA:3.40.50.1370 134 295 9.0E-113 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 1.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 1.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 1.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 216 226 1.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 278 289 1.9E-30 T 13-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 300 78.973 T 13-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 Gene3D G3DSA:3.40.50.1370 4 133 9.0E-113 T 13-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 144 2.6E-49 T 13-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 6.1E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 6.1E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 287 6.1E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDG55_08975 c4667bc4808272b7885731e720f8fd9f 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 252 261 6.1E-23 T 13-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 PIRSF PIRSF000185 21 447 1.4E-109 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 SUPERFAMILY SSF51735 201 447 5.92E-75 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 Gene3D G3DSA:1.10.285.10 8 382 1.8E-170 T 13-10-2018 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 56 183 1.2E-48 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 SMART SM00839 203 445 2.1E-83 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 Gene3D G3DSA:3.40.50.10860 54 189 1.8E-170 T 13-10-2018 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 Gene3D G3DSA:1.10.285.10 383 447 6.2E-11 T 13-10-2018 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 113 127 3.9E-31 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 371 382 3.9E-31 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 192 214 3.9E-31 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 234 254 3.9E-31 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 201 445 4.9E-83 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 Gene3D G3DSA:3.40.50.720 208 372 1.8E-170 T 13-10-2018 CDG55_05800 73e53c064eee5a8da9dfb40cb7cae597 447 SUPERFAMILY SSF53223 6 195 8.64E-73 T 13-10-2018 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 51.037 T 13-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 SUPERFAMILY SSF54980 393 468 1.62E-17 T 13-10-2018 IPR035647 EF-G domain III/V-like CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 Gene3D G3DSA:3.40.50.300 72 379 2.0E-111 T 13-10-2018 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 Gene3D G3DSA:3.40.50.300 110 275 2.0E-111 T 13-10-2018 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 Gene3D G3DSA:3.30.70.3280 390 529 3.5E-52 T 13-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 17 163 5.6E-20 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 3.9E-7 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 5 529 4.6E-257 T 13-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 SUPERFAMILY SSF50447 262 393 1.23E-26 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 Pfam PF00009 Elongation factor Tu GTP binding domain 14 277 3.0E-49 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 1.3E-46 T 13-10-2018 IPR032090 Peptide chain release factor 3, C-terminal CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 SUPERFAMILY SSF52540 10 277 6.44E-85 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 PRINTS PR00315 GTP-binding elongation factor signature 101 112 2.0E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 2.0E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 2.0E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 2.0E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_12485 b39b2210d1e77595aaeda73a2902ec2e 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 2.0E-12 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 SMART SM00525 189 209 8.6E-5 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 Gene3D G3DSA:1.10.340.30 21 130 3.2E-84 T 13-10-2018 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 Gene3D G3DSA:3.90.79.10 223 345 1.1E-13 T 13-10-2018 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 SUPERFAMILY SSF55811 218 341 1.62E-17 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 SUPERFAMILY SSF48150 6 222 1.3E-72 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 Pfam PF14815 NUDIX domain 233 340 1.0E-18 T 13-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 6 275 6.8E-108 T 13-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 Pfam PF00633 Helix-hairpin-helix motif 100 125 7.4E-6 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 166 7.9E-18 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 SMART SM00478 39 188 5.4E-39 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDG55_01405 b4e2649d9dcb4f8553f5c9ce8654fa83 345 Gene3D G3DSA:1.10.1670.10 9 209 3.2E-84 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CDG55_10635 23aee07589fbcc37d8f9c8fef2237734 489 Gene3D G3DSA:3.40.605.10 10 452 1.0E-142 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_10635 23aee07589fbcc37d8f9c8fef2237734 489 Pfam PF00171 Aldehyde dehydrogenase family 12 461 2.7E-120 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_10635 23aee07589fbcc37d8f9c8fef2237734 489 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 7 488 1.1E-253 T 13-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 CDG55_10635 23aee07589fbcc37d8f9c8fef2237734 489 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 4 489 57.53 T 13-10-2018 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 CDG55_10635 23aee07589fbcc37d8f9c8fef2237734 489 SUPERFAMILY SSF53720 5 458 4.19E-122 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_10635 23aee07589fbcc37d8f9c8fef2237734 489 Gene3D G3DSA:3.40.309.10 250 440 1.0E-142 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 Pfam PF00226 DnaJ domain 4 65 1.3E-21 T 13-10-2018 IPR001623 DnaJ domain CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 PRINTS PR00625 DnaJ domain signature 40 60 6.3E-19 T 13-10-2018 IPR001623 DnaJ domain CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 PRINTS PR00625 DnaJ domain signature 6 24 6.3E-19 T 13-10-2018 IPR001623 DnaJ domain CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 PRINTS PR00625 DnaJ domain signature 24 39 6.3E-19 T 13-10-2018 IPR001623 DnaJ domain CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 PRINTS PR00625 DnaJ domain signature 60 79 6.3E-19 T 13-10-2018 IPR001623 DnaJ domain CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 SUPERFAMILY SSF49493 139 219 7.59E-14 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 SUPERFAMILY SSF46565 3 99 2.75E-29 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 Gene3D G3DSA:1.10.287.110 1 133 1.6E-28 T 13-10-2018 IPR036869 Chaperone J-domain superfamily CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 SMART SM00271 3 60 2.5E-26 T 13-10-2018 IPR001623 DnaJ domain CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 Pfam PF01556 DnaJ C terminal domain 143 295 1.0E-32 T 13-10-2018 IPR002939 Chaperone DnaJ, C-terminal CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 Gene3D G3DSA:2.60.260.20 136 217 4.6E-20 T 13-10-2018 CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 Gene3D G3DSA:2.60.260.20 220 317 2.3E-19 T 13-10-2018 CDG55_13210 8b25c2856809f572ab03a2edd5a905a3 321 SUPERFAMILY SSF49493 224 305 6.54E-16 T 13-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 CDG55_04150 1f2e0832bce27c62782bc8c2c29bdcfe 232 Gene3D G3DSA:3.30.420.40 95 187 6.4E-57 T 13-10-2018 CDG55_04150 1f2e0832bce27c62782bc8c2c29bdcfe 232 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 218 3.0E-48 T 13-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 CDG55_04150 1f2e0832bce27c62782bc8c2c29bdcfe 232 Pfam PF00814 Glycoprotease family 36 141 8.3E-24 T 13-10-2018 IPR000905 Gcp-like domain CDG55_04150 1f2e0832bce27c62782bc8c2c29bdcfe 232 Gene3D G3DSA:3.30.420.40 3 218 6.4E-57 T 13-10-2018 CDG55_04150 1f2e0832bce27c62782bc8c2c29bdcfe 232 SUPERFAMILY SSF53067 1 103 1.04E-21 T 13-10-2018 CDG55_04150 1f2e0832bce27c62782bc8c2c29bdcfe 232 SUPERFAMILY SSF53067 111 216 2.72E-13 T 13-10-2018 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 1.1E-31 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 Gene3D G3DSA:1.10.1050.10 6 208 5.3E-79 T 13-10-2018 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 SMART SM00363 98 162 1.4E-17 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 1.0E-80 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 SUPERFAMILY SSF55174 2 208 4.84E-68 T 13-10-2018 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 Pfam PF01479 S4 domain 99 145 1.6E-18 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 Gene3D G3DSA:3.10.290.10 97 193 5.3E-79 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 SMART SM01390 3 97 7.1E-47 T 13-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 CDG55_03230 6c8053b90655e4799e23086364f8672d 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 35.094 T 13-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDG55_12245 0a3684cd4c82fe6ed812161ae852fa04 387 Gene3D G3DSA:2.40.110.10 125 238 1.3E-38 T 13-10-2018 CDG55_12245 0a3684cd4c82fe6ed812161ae852fa04 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 233 385 9.4E-43 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_12245 0a3684cd4c82fe6ed812161ae852fa04 387 SUPERFAMILY SSF47203 232 385 1.51E-43 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_12245 0a3684cd4c82fe6ed812161ae852fa04 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 221 7.0E-22 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_12245 0a3684cd4c82fe6ed812161ae852fa04 387 SUPERFAMILY SSF56645 5 244 8.9E-76 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_12245 0a3684cd4c82fe6ed812161ae852fa04 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 9 122 5.6E-27 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_12245 0a3684cd4c82fe6ed812161ae852fa04 387 Gene3D G3DSA:1.20.140.10 239 387 3.6E-42 T 13-10-2018 CDG55_12245 0a3684cd4c82fe6ed812161ae852fa04 387 Gene3D G3DSA:1.10.540.10 6 124 2.3E-32 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_09425 8ae0bc8c5b77c610f8fe08060f9d3923 129 Pfam PF14552 Tautomerase enzyme 38 114 7.9E-27 T 13-10-2018 IPR037479 Tautomerase, MSAD family CDG55_09425 8ae0bc8c5b77c610f8fe08060f9d3923 129 Gene3D G3DSA:3.30.429.10 2 129 2.5E-44 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily CDG55_09425 8ae0bc8c5b77c610f8fe08060f9d3923 129 SUPERFAMILY SSF55331 4 124 6.37E-33 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily CDG55_11530 1c1f1b5a562a184504877f38a7f9d1dc 240 Gene3D G3DSA:2.40.30.160 124 227 5.0E-19 T 13-10-2018 CDG55_11530 1c1f1b5a562a184504877f38a7f9d1dc 240 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 115 179 7.0E-23 T 13-10-2018 IPR017703 YgfZ/GcvT conserved site CDG55_11530 1c1f1b5a562a184504877f38a7f9d1dc 240 Gene3D G3DSA:3.30.70.1400 7 91 7.1E-19 T 13-10-2018 CDG55_11530 1c1f1b5a562a184504877f38a7f9d1dc 240 SUPERFAMILY SSF103025 7 167 2.04E-36 T 13-10-2018 CDG55_11530 1c1f1b5a562a184504877f38a7f9d1dc 240 PIRSF PIRSF006487 3 94 6.8E-7 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CDG55_11530 1c1f1b5a562a184504877f38a7f9d1dc 240 PIRSF PIRSF006487 89 231 46.0 T 13-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 CDG55_11530 1c1f1b5a562a184504877f38a7f9d1dc 240 Pfam PF01571 Aminomethyltransferase folate-binding domain 6 89 2.4E-8 T 13-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain CDG55_07720 29b775de1bd24f23bc7bf97e37f054b6 136 Gene3D G3DSA:3.30.300.20 3 136 5.6E-36 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_07720 29b775de1bd24f23bc7bf97e37f054b6 136 Pfam PF02566 OsmC-like protein 36 131 1.2E-20 T 13-10-2018 IPR003718 OsmC/Ohr family CDG55_07720 29b775de1bd24f23bc7bf97e37f054b6 136 SUPERFAMILY SSF82784 12 133 1.96E-34 T 13-10-2018 IPR036102 OsmC/Ohr superfamily CDG55_10480 b8611d8d2062e7a6037579e7263b6495 470 Gene3D G3DSA:1.20.1740.10 14 470 9.7E-57 T 13-10-2018 CDG55_10480 b8611d8d2062e7a6037579e7263b6495 470 Pfam PF00324 Amino acid permease 23 462 2.6E-98 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CDG55_10480 b8611d8d2062e7a6037579e7263b6495 470 PIRSF PIRSF006060 1 470 1.9E-62 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CDG55_13860 8ff6a28ba4b3e222ee191a324bf80e70 86 SMART SM00899 1 81 2.6E-16 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CDG55_13860 8ff6a28ba4b3e222ee191a324bf80e70 86 SUPERFAMILY SSF50037 5 80 6.18E-15 T 13-10-2018 IPR008988 Transcriptional repressor, C-terminal CDG55_13860 8ff6a28ba4b3e222ee191a324bf80e70 86 Gene3D G3DSA:2.30.30.90 1 82 6.5E-24 T 13-10-2018 IPR038157 Ferrous iron transporter, core domain CDG55_13860 8ff6a28ba4b3e222ee191a324bf80e70 86 Pfam PF04023 FeoA domain 1 80 3.6E-15 T 13-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 SUPERFAMILY SSF52540 1 436 9.4E-30 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1139 21.491 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1137 1.4E-274 T 13-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1130 2.2E-52 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 SUPERFAMILY SSF57997 646 866 4.58E-6 T 13-10-2018 CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 Gene3D G3DSA:3.40.50.300 904 1145 1.5E-46 T 13-10-2018 CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 PIRSF PIRSF005719 1 1144 1.9E-230 T 13-10-2018 IPR024704 Structural maintenance of chromosomes protein CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 SUPERFAMILY SSF52540 903 1139 2.51E-40 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04595 04cea96d72da77fa404853170d4be0cc 1149 Gene3D G3DSA:3.40.50.300 1 266 6.8E-53 T 13-10-2018 CDG55_12050 37fec89587c8ec60b1df3996be34f56a 217 Gene3D G3DSA:3.90.470.20 18 95 5.2E-30 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CDG55_12050 37fec89587c8ec60b1df3996be34f56a 217 SUPERFAMILY SSF56214 34 86 1.62E-8 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CDG55_12050 37fec89587c8ec60b1df3996be34f56a 217 Gene3D G3DSA:3.90.470.20 96 191 5.2E-30 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CDG55_12050 37fec89587c8ec60b1df3996be34f56a 217 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 96 170 1.7E-13 T 13-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CDG55_12050 37fec89587c8ec60b1df3996be34f56a 217 SUPERFAMILY SSF56214 95 200 4.01E-20 T 13-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 CDG55_14310 f92b7960e6d15e4ed769ea3543bd5b3d 262 SUPERFAMILY SSF52540 7 226 3.23E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14310 f92b7960e6d15e4ed769ea3543bd5b3d 262 SMART SM00382 38 205 1.3E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_14310 f92b7960e6d15e4ed769ea3543bd5b3d 262 Pfam PF00005 ABC transporter 29 156 1.6E-26 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_14310 f92b7960e6d15e4ed769ea3543bd5b3d 262 Gene3D G3DSA:3.40.50.300 4 246 4.3E-57 T 13-10-2018 CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 Gene3D G3DSA:1.10.40.30 406 463 1.1E-26 T 13-10-2018 CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 461 91.123 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 Gene3D G3DSA:1.10.275.10 4 137 9.4E-59 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 460 3.8E-231 T 13-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 SUPERFAMILY SSF48557 3 461 2.04E-160 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 Gene3D G3DSA:1.20.200.10 138 405 2.3E-119 T 13-10-2018 CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 Pfam PF00206 Lyase 11 341 6.2E-116 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 Pfam PF10415 Fumarase C C-terminus 407 459 2.4E-25 T 13-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 PRINTS PR00149 Fumarate lyase superfamily signature 316 332 9.3E-35 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 9.3E-35 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 PRINTS PR00149 Fumarate lyase superfamily signature 179 197 9.3E-35 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_09005 ef267034fce30bb9c9f88d1a0f72f9be 464 PRINTS PR00149 Fumarate lyase superfamily signature 270 297 9.3E-35 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 SUPERFAMILY SSF56601 5 273 7.77E-77 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 SMART SM00936 273 363 1.6E-34 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 140 153 1.4E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 57 68 1.4E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 113 130 1.4E-16 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 24 252 3.7E-77 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 Gene3D G3DSA:3.40.710.10 17 271 3.5E-84 T 13-10-2018 CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 SUPERFAMILY SSF69189 273 365 7.85E-26 T 13-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 Gene3D G3DSA:2.60.410.10 273 363 7.6E-30 T 13-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDG55_06525 cc03aaa2978a4a40dc112c29ca477f01 382 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 273 363 7.8E-25 T 13-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDG55_10100 58e91a6182cb425f03ade43e6db523c7 149 SUPERFAMILY SSF54637 1 134 1.97E-40 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_10100 58e91a6182cb425f03ade43e6db523c7 149 Gene3D G3DSA:3.10.129.10 1 135 9.9E-34 T 13-10-2018 CDG55_10100 58e91a6182cb425f03ade43e6db523c7 149 Pfam PF13279 Thioesterase-like superfamily 11 129 6.3E-12 T 13-10-2018 CDG55_01170 59411f7878b567f432732b7abb0d26bb 212 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 3 180 1.4E-12 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDG55_01170 59411f7878b567f432732b7abb0d26bb 212 PIRSF PIRSF009320 1 210 8.9E-36 T 13-10-2018 CDG55_01170 59411f7878b567f432732b7abb0d26bb 212 SUPERFAMILY SSF52540 1 211 3.86E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01170 59411f7878b567f432732b7abb0d26bb 212 Gene3D G3DSA:3.40.50.300 1 211 7.9E-45 T 13-10-2018 CDG55_09565 886805e6ef1204ac27deeab5a37c2abf 238 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 227 9.7E-33 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CDG55_09565 886805e6ef1204ac27deeab5a37c2abf 238 Gene3D G3DSA:3.90.226.10 2 229 1.6E-46 T 13-10-2018 CDG55_09565 886805e6ef1204ac27deeab5a37c2abf 238 SUPERFAMILY SSF52096 4 218 1.07E-43 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_05970 2849f0b43153542a7ae89641becc93a8 227 Pfam PF00043 Glutathione S-transferase, C-terminal domain 143 203 2.2E-6 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CDG55_05970 2849f0b43153542a7ae89641becc93a8 227 SUPERFAMILY SSF52833 2 80 9.61E-11 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_05970 2849f0b43153542a7ae89641becc93a8 227 Gene3D G3DSA:1.20.1050.10 88 208 5.1E-18 T 13-10-2018 CDG55_05970 2849f0b43153542a7ae89641becc93a8 227 SUPERFAMILY SSF47616 134 209 1.67E-14 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CDG55_05970 2849f0b43153542a7ae89641becc93a8 227 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 79 4.2E-7 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_05970 2849f0b43153542a7ae89641becc93a8 227 Gene3D G3DSA:3.40.30.10 1 83 1.9E-17 T 13-10-2018 CDG55_05560 1d12deb58a607b5823a6f312cdb23dbf 567 Pfam PF13180 PDZ domain 471 520 9.6E-7 T 13-10-2018 IPR001478 PDZ domain GO:0005515 CDG55_05560 1d12deb58a607b5823a6f312cdb23dbf 567 Gene3D G3DSA:1.10.390.60 175 445 1.7E-101 T 13-10-2018 CDG55_05560 1d12deb58a607b5823a6f312cdb23dbf 567 Pfam PF05299 M61 glycyl aminopeptidase 268 384 2.3E-47 T 13-10-2018 IPR007963 Peptidase M61, catalytic domain CDG55_05560 1d12deb58a607b5823a6f312cdb23dbf 567 PIRSF PIRSF016493 1 567 3.5E-199 T 13-10-2018 IPR024191 Peptidase M61 CDG55_05560 1d12deb58a607b5823a6f312cdb23dbf 567 SUPERFAMILY SSF55486 180 413 9.52E-15 T 13-10-2018 CDG55_05560 1d12deb58a607b5823a6f312cdb23dbf 567 Gene3D G3DSA:2.60.40.3650 1 172 2.9E-55 T 13-10-2018 CDG55_05560 1d12deb58a607b5823a6f312cdb23dbf 567 SUPERFAMILY SSF50156 462 513 8.15E-9 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CDG55_05560 1d12deb58a607b5823a6f312cdb23dbf 567 Gene3D G3DSA:2.30.42.10 469 567 3.0E-15 T 13-10-2018 CDG55_10025 ae9c7c087a5886e974f1bbf5cadb89e6 404 Pfam PF13372 Alginate export 27 272 1.1E-13 T 13-10-2018 IPR025388 Alginate export domain CDG55_10025 ae9c7c087a5886e974f1bbf5cadb89e6 404 SUPERFAMILY SSF56935 26 294 4.76E-7 T 13-10-2018 CDG55_08255 588f2f8ef1bee69b152fff5f6607f092 404 Gene3D G3DSA:3.90.1150.10 15 389 2.0E-124 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_08255 588f2f8ef1bee69b152fff5f6607f092 404 SUPERFAMILY SSF53383 14 398 3.99E-112 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_08255 588f2f8ef1bee69b152fff5f6607f092 404 PIRSF PIRSF000521 172 401 6.9E-32 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_08255 588f2f8ef1bee69b152fff5f6607f092 404 PIRSF PIRSF000521 13 163 8.4E-12 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_08255 588f2f8ef1bee69b152fff5f6607f092 404 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 16 401 69.023 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CDG55_08255 588f2f8ef1bee69b152fff5f6607f092 404 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 17 398 6.4E-129 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CDG55_08255 588f2f8ef1bee69b152fff5f6607f092 404 Pfam PF00202 Aminotransferase class-III 26 397 9.8E-102 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_08255 588f2f8ef1bee69b152fff5f6607f092 404 Gene3D G3DSA:3.40.640.10 60 310 2.0E-124 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_02845 84b8f0b362d58deb84484e64a31cd409 214 PIRSF PIRSF009320 1 197 3.0E-30 T 13-10-2018 CDG55_02845 84b8f0b362d58deb84484e64a31cd409 214 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 181 2.2E-17 T 13-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CDG55_02845 84b8f0b362d58deb84484e64a31cd409 214 Gene3D G3DSA:3.40.50.300 1 207 4.1E-41 T 13-10-2018 CDG55_02845 84b8f0b362d58deb84484e64a31cd409 214 SUPERFAMILY SSF52540 1 188 2.93E-33 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03815 807ef8060c852c0c134fc845b2a89c0b 268 SUPERFAMILY SSF101386 2 98 6.54E-23 T 13-10-2018 CDG55_03815 807ef8060c852c0c134fc845b2a89c0b 268 SUPERFAMILY SSF101386 134 228 2.99E-21 T 13-10-2018 CDG55_03815 807ef8060c852c0c134fc845b2a89c0b 268 Gene3D G3DSA:1.10.287.1080 124 252 5.0E-38 T 13-10-2018 CDG55_03815 807ef8060c852c0c134fc845b2a89c0b 268 Gene3D G3DSA:1.10.287.1080 1 120 1.3E-42 T 13-10-2018 CDG55_03815 807ef8060c852c0c134fc845b2a89c0b 268 TIGRFAM TIGR00444 mazG: MazG family protein 7 249 1.4E-80 T 13-10-2018 IPR011551 NTP pyrophosphohydrolase MazG CDG55_03815 807ef8060c852c0c134fc845b2a89c0b 268 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 21 94 1.3E-24 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CDG55_03815 807ef8060c852c0c134fc845b2a89c0b 268 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 162 218 6.6E-9 T 13-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CDG55_00955 fe52c0914437295ffe2a2f213d2dc629 89 Gene3D G3DSA:1.10.10.10 1 89 3.6E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_00955 fe52c0914437295ffe2a2f213d2dc629 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 39 54 3.4E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_00955 fe52c0914437295ffe2a2f213d2dc629 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 3.4E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_00955 fe52c0914437295ffe2a2f213d2dc629 89 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 54 69 3.4E-10 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_00955 fe52c0914437295ffe2a2f213d2dc629 89 Pfam PF01022 Bacterial regulatory protein, arsR family 13 57 4.1E-12 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_00955 fe52c0914437295ffe2a2f213d2dc629 89 SUPERFAMILY SSF46785 1 85 4.65E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00955 fe52c0914437295ffe2a2f213d2dc629 89 SMART SM00418 5 83 5.8E-21 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_04670 2ed87f0a53f8f8e58d3d6d0257dcd967 672 Pfam PF01432 Peptidase family M3 232 665 2.2E-104 T 13-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 CDG55_04670 2ed87f0a53f8f8e58d3d6d0257dcd967 672 Gene3D G3DSA:1.10.1370.40 56 663 2.2E-170 T 13-10-2018 CDG55_04670 2ed87f0a53f8f8e58d3d6d0257dcd967 672 Gene3D G3DSA:1.10.1370.10 156 601 2.2E-170 T 13-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 CDG55_04670 2ed87f0a53f8f8e58d3d6d0257dcd967 672 SUPERFAMILY SSF55486 35 663 1.06E-137 T 13-10-2018 CDG55_13735 0d197dbeab18bd9aaf1179d5b9ca6ef0 207 SUPERFAMILY SSF49879 2 96 1.7E-26 T 13-10-2018 IPR008984 SMAD/FHA domain superfamily GO:0005515 CDG55_13735 0d197dbeab18bd9aaf1179d5b9ca6ef0 207 Gene3D G3DSA:2.60.200.20 1 96 2.3E-26 T 13-10-2018 CDG55_13735 0d197dbeab18bd9aaf1179d5b9ca6ef0 207 SMART SM00240 22 72 1.3E-12 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 CDG55_13735 0d197dbeab18bd9aaf1179d5b9ca6ef0 207 Pfam PF00498 FHA domain 24 88 6.0E-21 T 13-10-2018 IPR000253 Forkhead-associated (FHA) domain GO:0005515 CDG55_11290 39cc381ce31a98cb3f93375174a313cb 461 Pfam PF06974 Protein of unknown function (DUF1298) 303 446 1.5E-41 T 13-10-2018 IPR009721 O-acyltransferase WSD1, C-terminal GO:0004144 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 CDG55_11290 39cc381ce31a98cb3f93375174a313cb 461 TIGRFAM TIGR02946 acyl_WS_DGAT: acyltransferase, WS/DGAT/MGAT 4 450 7.9E-155 T 13-10-2018 IPR014292 Acyltransferase, WS/DGAT/MGAT GO:0016746|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 CDG55_11290 39cc381ce31a98cb3f93375174a313cb 461 Pfam PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain 4 264 7.7E-66 T 13-10-2018 IPR004255 O-acyltransferase, WSD1, N-terminal GO:0004144|GO:0045017 KEGG: 00073+2.3.1.20|KEGG: 00561+2.3.1.20 CDG55_09625 e7d116e4d4f6572d1f48aa494ea74158 158 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 10 131 5.0E-37 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CDG55_09625 e7d116e4d4f6572d1f48aa494ea74158 158 SUPERFAMILY SSF52540 22 121 1.45E-18 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09625 e7d116e4d4f6572d1f48aa494ea74158 158 Gene3D G3DSA:3.40.50.300 3 155 7.5E-41 T 13-10-2018 CDG55_09625 e7d116e4d4f6572d1f48aa494ea74158 158 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 11 141 3.2E-41 T 13-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 CDG55_03750 a3b0af57a4deb384a35f8deb67d191e8 264 SUPERFAMILY SSF51658 1 256 1.24E-66 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CDG55_03750 a3b0af57a4deb384a35f8deb67d191e8 264 Pfam PF01261 Xylose isomerase-like TIM barrel 21 217 4.9E-24 T 13-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain CDG55_03750 a3b0af57a4deb384a35f8deb67d191e8 264 Gene3D G3DSA:3.20.20.150 1 262 1.3E-64 T 13-10-2018 CDG55_03750 a3b0af57a4deb384a35f8deb67d191e8 264 PIRSF PIRSF006241 1 261 5.8E-92 T 13-10-2018 IPR026040 Hydroxypyruvate isomerase-like CDG55_11490 d01286a61cacd4885caa3f7790cbef57 120 SUPERFAMILY SSF52172 1 120 9.68E-40 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_11490 d01286a61cacd4885caa3f7790cbef57 120 SMART SM00448 2 115 1.7E-39 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11490 d01286a61cacd4885caa3f7790cbef57 120 Pfam PF00072 Response regulator receiver domain 4 115 4.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11490 d01286a61cacd4885caa3f7790cbef57 120 Gene3D G3DSA:3.40.50.12740 1 120 7.4E-44 T 13-10-2018 CDG55_10685 7e06f92cc936ffdb73a9bb2ce3e86f1d 294 Pfam PF01545 Cation efflux family 20 213 9.4E-46 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDG55_10685 7e06f92cc936ffdb73a9bb2ce3e86f1d 294 Pfam PF16916 Dimerisation domain of Zinc Transporter 218 293 1.2E-21 T 13-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain CDG55_10685 7e06f92cc936ffdb73a9bb2ce3e86f1d 294 SUPERFAMILY SSF161111 13 214 3.01E-54 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_10685 7e06f92cc936ffdb73a9bb2ce3e86f1d 294 Gene3D G3DSA:1.20.1510.10 15 213 2.2E-60 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_10685 7e06f92cc936ffdb73a9bb2ce3e86f1d 294 Gene3D G3DSA:3.30.70.1350 214 294 1.5E-20 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CDG55_10685 7e06f92cc936ffdb73a9bb2ce3e86f1d 294 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 16 293 2.5E-69 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDG55_10685 7e06f92cc936ffdb73a9bb2ce3e86f1d 294 SUPERFAMILY SSF160240 216 293 3.4E-20 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CDG55_13550 7c2b2843cb5688bda3d3fd4723fb9d94 195 PIRSF PIRSF000847 4 195 4.8E-47 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CDG55_13550 7c2b2843cb5688bda3d3fd4723fb9d94 195 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 8 193 4.1E-52 T 13-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CDG55_13550 7c2b2843cb5688bda3d3fd4723fb9d94 195 Pfam PF01066 CDP-alcohol phosphatidyltransferase 8 85 2.7E-17 T 13-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 CDG55_13550 7c2b2843cb5688bda3d3fd4723fb9d94 195 Gene3D G3DSA:1.20.120.1760 5 188 1.0E-13 T 13-10-2018 CDG55_07985 f5311ea955042a6dce01c081259e7157 65 SUPERFAMILY SSF54285 3 64 1.21E-15 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CDG55_07985 f5311ea955042a6dce01c081259e7157 65 Pfam PF02597 ThiS family 8 65 2.5E-12 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 CDG55_07985 f5311ea955042a6dce01c081259e7157 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 65 5.2E-19 T 13-10-2018 IPR010035 ThiS, thiamine-biosynthesis CDG55_07985 f5311ea955042a6dce01c081259e7157 65 Gene3D G3DSA:3.10.20.30 1 65 3.5E-19 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_14845 be7d2f6fbb1d80397a296b1584af2f78 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 44.364 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 CDG55_14845 be7d2f6fbb1d80397a296b1584af2f78 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 6.7E-24 T 13-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_14845 be7d2f6fbb1d80397a296b1584af2f78 238 SUPERFAMILY SSF55666 154 236 2.36E-24 T 13-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_14845 be7d2f6fbb1d80397a296b1584af2f78 238 Gene3D G3DSA:3.30.230.70 10 237 7.6E-65 T 13-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_14845 be7d2f6fbb1d80397a296b1584af2f78 238 SUPERFAMILY SSF54211 1 181 3.04E-46 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_14845 be7d2f6fbb1d80397a296b1584af2f78 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 3.9E-116 T 13-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 CDG55_14845 be7d2f6fbb1d80397a296b1584af2f78 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 224 4.1E-10 T 13-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 CDG55_06200 1101140b828ee5e90c1751843b56b571 314 Pfam PF00561 alpha/beta hydrolase fold 40 168 6.7E-19 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_06200 1101140b828ee5e90c1751843b56b571 314 Gene3D G3DSA:3.40.50.1820 19 310 1.7E-55 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_06200 1101140b828ee5e90c1751843b56b571 314 SUPERFAMILY SSF53474 6 310 1.1E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_02250 271132912ec45bae62f822c05f7b63cc 243 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 237 35.872 T 13-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CDG55_02250 271132912ec45bae62f822c05f7b63cc 243 Gene3D G3DSA:3.20.20.70 2 241 8.2E-86 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_02250 271132912ec45bae62f822c05f7b63cc 243 Pfam PF00977 Histidine biosynthesis protein 3 229 5.8E-79 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 CDG55_02250 271132912ec45bae62f822c05f7b63cc 243 SUPERFAMILY SSF51366 1 235 6.67E-75 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CDG55_02250 271132912ec45bae62f822c05f7b63cc 243 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 233 3.3E-79 T 13-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 Gene3D G3DSA:3.20.20.140 1 261 1.4E-78 T 13-10-2018 CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 Pfam PF14579 Helix-hairpin-helix motif 800 888 2.0E-26 T 13-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 283 725 5.6E-164 T 13-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 Pfam PF01336 OB-fold nucleic acid binding domain 983 1040 2.8E-6 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 SMART SM00481 4 71 1.4E-16 T 13-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 Pfam PF02811 PHP domain 5 163 5.2E-29 T 13-10-2018 IPR004013 PHP domain GO:0003824 CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 Gene3D G3DSA:1.10.10.1600 428 511 3.4E-25 T 13-10-2018 CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 SUPERFAMILY SSF89550 3 254 1.12E-13 T 13-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 CDG55_07315 4a7c0cd132aeb579cc762696d53ff13e 1187 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 3 985 0.0 T 13-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 2.6E-31 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00149 Fumarate lyase superfamily signature 291 307 2.6E-31 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00149 Fumarate lyase superfamily signature 118 136 2.6E-31 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00149 Fumarate lyase superfamily signature 247 274 2.6E-31 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 Hamap MF_00006 Argininosuccinate lyase [argH]. 18 470 44.31 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 Gene3D G3DSA:1.10.40.30 376 449 1.1E-193 T 13-10-2018 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 TIGRFAM TIGR00838 argH: argininosuccinate lyase 19 472 5.5E-195 T 13-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 Pfam PF00206 Lyase 22 316 3.8E-79 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00145 Argininosuccinate lyase family signature 209 225 2.2E-68 T 13-10-2018 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00145 Argininosuccinate lyase family signature 291 307 2.2E-68 T 13-10-2018 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00145 Argininosuccinate lyase family signature 158 178 2.2E-68 T 13-10-2018 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00145 Argininosuccinate lyase family signature 117 139 2.2E-68 T 13-10-2018 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00145 Argininosuccinate lyase family signature 326 345 2.2E-68 T 13-10-2018 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 PRINTS PR00145 Argininosuccinate lyase family signature 247 271 2.2E-68 T 13-10-2018 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 Gene3D G3DSA:1.20.200.10 135 465 1.1E-193 T 13-10-2018 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 Pfam PF14698 Argininosuccinate lyase C-terminal 379 448 1.1E-25 T 13-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 SUPERFAMILY SSF48557 19 472 6.13E-156 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CDG55_13795 3fbdebd55470a3d2259b713a0b429731 477 Gene3D G3DSA:1.10.275.10 41 245 1.1E-193 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CDG55_12780 1de80bfe3a52d6da9fd9fff6d61bb8ad 190 Pfam PF03729 Short repeat of unknown function (DUF308) 23 92 1.5E-10 T 13-10-2018 IPR005325 Protein of unknown function DUF308, membrane CDG55_12780 1de80bfe3a52d6da9fd9fff6d61bb8ad 190 Pfam PF03729 Short repeat of unknown function (DUF308) 81 148 4.9E-10 T 13-10-2018 IPR005325 Protein of unknown function DUF308, membrane CDG55_12780 1de80bfe3a52d6da9fd9fff6d61bb8ad 190 Pfam PF03729 Short repeat of unknown function (DUF308) 136 177 0.0065 T 13-10-2018 IPR005325 Protein of unknown function DUF308, membrane CDG55_06690 1c8bd56f3aadd8b75cbc8c3f033e04af 355 SUPERFAMILY SSF52980 43 231 1.55E-29 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_06690 1c8bd56f3aadd8b75cbc8c3f033e04af 355 Gene3D G3DSA:3.90.320.10 42 250 4.4E-36 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal CDG55_06690 1c8bd56f3aadd8b75cbc8c3f033e04af 355 Pfam PF09588 YqaJ-like viral recombinase domain 45 188 1.5E-32 T 13-10-2018 IPR019080 YqaJ viral recombinase CDG55_06690 1c8bd56f3aadd8b75cbc8c3f033e04af 355 TIGRFAM TIGR03033 phage_rel_nuc: putative phage-type endonuclease 41 197 2.6E-35 T 13-10-2018 IPR017482 Putative phage-type endonuclease CDG55_06315 b0db2d3bc8a59dfe40d2eb376d5e7900 280 PRINTS PR01438 Universal stress protein signature 258 280 1.3E-8 T 13-10-2018 IPR006015 Universal stress protein A CDG55_06315 b0db2d3bc8a59dfe40d2eb376d5e7900 280 PRINTS PR01438 Universal stress protein signature 1 11 1.3E-8 T 13-10-2018 IPR006015 Universal stress protein A CDG55_06315 b0db2d3bc8a59dfe40d2eb376d5e7900 280 PRINTS PR01438 Universal stress protein signature 240 252 1.3E-8 T 13-10-2018 IPR006015 Universal stress protein A CDG55_06315 b0db2d3bc8a59dfe40d2eb376d5e7900 280 SUPERFAMILY SSF52402 164 280 4.94E-21 T 13-10-2018 CDG55_06315 b0db2d3bc8a59dfe40d2eb376d5e7900 280 Pfam PF00582 Universal stress protein family 2 157 1.5E-5 T 13-10-2018 IPR006016 UspA CDG55_06315 b0db2d3bc8a59dfe40d2eb376d5e7900 280 Pfam PF00582 Universal stress protein family 212 280 1.1E-10 T 13-10-2018 IPR006016 UspA CDG55_06315 b0db2d3bc8a59dfe40d2eb376d5e7900 280 SUPERFAMILY SSF52402 1 157 2.93E-10 T 13-10-2018 CDG55_06315 b0db2d3bc8a59dfe40d2eb376d5e7900 280 Gene3D G3DSA:3.40.50.12370 2 280 2.1E-47 T 13-10-2018 CDG55_08505 3bf48b11333e6e364ceb2b40b7bd3667 234 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 6 228 39.135 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CDG55_08505 3bf48b11333e6e364ceb2b40b7bd3667 234 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 229 2.0E-62 T 13-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CDG55_08505 3bf48b11333e6e364ceb2b40b7bd3667 234 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 228 1.5E-65 T 13-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 CDG55_08505 3bf48b11333e6e364ceb2b40b7bd3667 234 Gene3D G3DSA:3.90.550.10 1 233 1.1E-65 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_08505 3bf48b11333e6e364ceb2b40b7bd3667 234 SUPERFAMILY SSF53448 7 229 9.69E-51 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_01675 61a05e029534540c186dfdb00e0dc3ce 232 SMART SM00382 26 218 2.8E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_01675 61a05e029534540c186dfdb00e0dc3ce 232 SUPERFAMILY SSF52540 1 221 1.3E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01675 61a05e029534540c186dfdb00e0dc3ce 232 Gene3D G3DSA:3.40.50.300 1 230 1.3E-60 T 13-10-2018 CDG55_01675 61a05e029534540c186dfdb00e0dc3ce 232 Pfam PF00005 ABC transporter 17 161 1.4E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_01675 61a05e029534540c186dfdb00e0dc3ce 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 1.4E-105 T 13-10-2018 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE CDG55_03290 fcf4ddf31b5d6d734d8a4d08d3e28963 294 Pfam PF00892 EamA-like transporter family 17 142 1.8E-18 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_03290 fcf4ddf31b5d6d734d8a4d08d3e28963 294 Pfam PF00892 EamA-like transporter family 154 280 1.8E-13 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_03290 fcf4ddf31b5d6d734d8a4d08d3e28963 294 SUPERFAMILY SSF103481 46 146 9.68E-16 T 13-10-2018 CDG55_03290 fcf4ddf31b5d6d734d8a4d08d3e28963 294 SUPERFAMILY SSF103481 186 283 1.96E-15 T 13-10-2018 CDG55_05870 b1b07ae69ffce7f9d154c35653f2d5fc 438 SMART SM01011 3 139 4.8E-51 T 13-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 CDG55_05870 b1b07ae69ffce7f9d154c35653f2d5fc 438 Pfam PF00557 Metallopeptidase family M24 183 415 4.1E-61 T 13-10-2018 IPR000994 Peptidase M24 CDG55_05870 b1b07ae69ffce7f9d154c35653f2d5fc 438 Gene3D G3DSA:3.40.350.10 3 174 3.6E-52 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CDG55_05870 b1b07ae69ffce7f9d154c35653f2d5fc 438 SUPERFAMILY SSF53092 4 177 1.52E-45 T 13-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CDG55_05870 b1b07ae69ffce7f9d154c35653f2d5fc 438 Pfam PF05195 Aminopeptidase P, N-terminal domain 8 126 4.9E-34 T 13-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 CDG55_05870 b1b07ae69ffce7f9d154c35653f2d5fc 438 SUPERFAMILY SSF55920 178 436 1.44E-82 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CDG55_05870 b1b07ae69ffce7f9d154c35653f2d5fc 438 Gene3D G3DSA:3.90.230.10 176 438 1.8E-95 T 13-10-2018 CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 401 1.2E-145 T 13-10-2018 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 Pfam PF00482 Type II secretion system (T2SS), protein F 70 191 2.1E-29 T 13-10-2018 IPR018076 Type II secretion system F domain CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 Pfam PF00482 Type II secretion system (T2SS), protein F 271 393 1.6E-29 T 13-10-2018 IPR018076 Type II secretion system F domain CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 65 77 9.4E-31 T 13-10-2018 IPR003004 GspF/PilC family CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 366 380 9.4E-31 T 13-10-2018 IPR003004 GspF/PilC family CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 382 401 9.4E-31 T 13-10-2018 IPR003004 GspF/PilC family CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 PRINTS PR00812 Bacterial general secretion pathway protein F signature 163 191 9.4E-31 T 13-10-2018 IPR003004 GspF/PilC family CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 Gene3D G3DSA:1.20.81.30 55 170 2.4E-29 T 13-10-2018 CDG55_13185 24d13a252dc5277ba2e80db6f5ab3ddb 401 Gene3D G3DSA:1.20.81.30 254 363 5.6E-27 T 13-10-2018 CDG55_13870 d0c585f1acd103c81a94ce8937b93670 271 Gene3D G3DSA:3.40.30.10 118 271 4.6E-39 T 13-10-2018 CDG55_13870 d0c585f1acd103c81a94ce8937b93670 271 SUPERFAMILY SSF54423 68 117 9.22E-8 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CDG55_13870 d0c585f1acd103c81a94ce8937b93670 271 SUPERFAMILY SSF52833 128 271 1.48E-32 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_13870 d0c585f1acd103c81a94ce8937b93670 271 Pfam PF10411 Disulfide bond isomerase protein N-terminus 63 115 1.1E-11 T 13-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal CDG55_13870 d0c585f1acd103c81a94ce8937b93670 271 Gene3D G3DSA:3.10.450.70 58 117 8.7E-6 T 13-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 CDG55_13870 d0c585f1acd103c81a94ce8937b93670 271 Pfam PF13098 Thioredoxin-like domain 150 269 5.4E-25 T 13-10-2018 IPR012336 Thioredoxin-like fold CDG55_10840 a2af1e1544ae6a0388a7d4e2ea96f1a0 145 PRINTS PR01438 Universal stress protein signature 105 117 1.4E-20 T 13-10-2018 IPR006015 Universal stress protein A CDG55_10840 a2af1e1544ae6a0388a7d4e2ea96f1a0 145 PRINTS PR01438 Universal stress protein signature 123 145 1.4E-20 T 13-10-2018 IPR006015 Universal stress protein A CDG55_10840 a2af1e1544ae6a0388a7d4e2ea96f1a0 145 PRINTS PR01438 Universal stress protein signature 3 21 1.4E-20 T 13-10-2018 IPR006015 Universal stress protein A CDG55_10840 a2af1e1544ae6a0388a7d4e2ea96f1a0 145 Gene3D G3DSA:3.40.50.620 1 145 5.6E-39 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10840 a2af1e1544ae6a0388a7d4e2ea96f1a0 145 Pfam PF00582 Universal stress protein family 3 145 8.4E-32 T 13-10-2018 IPR006016 UspA CDG55_10840 a2af1e1544ae6a0388a7d4e2ea96f1a0 145 PIRSF PIRSF006276 1 145 1.2E-22 T 13-10-2018 IPR006015 Universal stress protein A CDG55_10840 a2af1e1544ae6a0388a7d4e2ea96f1a0 145 SUPERFAMILY SSF52402 3 145 3.77E-38 T 13-10-2018 CDG55_08920 ef9a4c1a9774d7cee3a29f4a7e69a175 342 Pfam PF01609 Transposase DDE domain 71 295 1.3E-16 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDG55_08920 ef9a4c1a9774d7cee3a29f4a7e69a175 342 SUPERFAMILY SSF53098 23 300 3.72E-28 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_00775 ef9a4c1a9774d7cee3a29f4a7e69a175 342 Pfam PF01609 Transposase DDE domain 71 295 1.3E-16 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDG55_00775 ef9a4c1a9774d7cee3a29f4a7e69a175 342 SUPERFAMILY SSF53098 23 300 3.72E-28 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 261 381 3.0E-35 T 13-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 Gene3D G3DSA:3.10.150.10 129 263 2.6E-32 T 13-10-2018 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 Gene3D G3DSA:3.10.150.10 1 125 3.0E-34 T 13-10-2018 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 3 122 1.0E-30 T 13-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 SUPERFAMILY SSF55979 131 260 1.3E-21 T 13-10-2018 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 Gene3D G3DSA:3.10.150.10 264 382 3.3E-36 T 13-10-2018 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 PIRSF PIRSF000804 1 382 7.6E-107 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 Pfam PF02767 DNA polymerase III beta subunit, central domain 133 259 5.6E-30 T 13-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 2 381 1.1E-93 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 SUPERFAMILY SSF55979 261 382 7.59E-35 T 13-10-2018 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 SUPERFAMILY SSF55979 3 120 4.59E-23 T 13-10-2018 CDG55_01180 1b96b1f2445a7c6c2344867b242d1f38 382 SMART SM00480 17 378 8.1E-122 T 13-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 CDG55_10160 aa895b34789c4bf60a4405f5f2886b77 250 SUPERFAMILY SSF56925 49 250 2.01E-9 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CDG55_10160 aa895b34789c4bf60a4405f5f2886b77 250 Gene3D G3DSA:2.40.160.170 24 250 1.5E-72 T 13-10-2018 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 Pfam PF13533 Biotin-lipoyl like 64 113 1.2E-13 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 Pfam PF13437 HlyD family secretion protein 249 365 2.7E-16 T 13-10-2018 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 SUPERFAMILY SSF111369 62 123 4.84E-9 T 13-10-2018 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 Gene3D G3DSA:1.10.287.470 133 217 1.7E-12 T 13-10-2018 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 Gene3D G3DSA:1.10.287.470 99 126 3.7E-13 T 13-10-2018 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 Gene3D G3DSA:2.40.50.100 64 98 3.7E-13 T 13-10-2018 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 SUPERFAMILY SSF111369 142 200 3.53E-7 T 13-10-2018 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 76 96 1.3E-7 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 367 382 1.3E-7 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 261 282 1.3E-7 T 13-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 SUPERFAMILY SSF111369 195 302 8.11E-12 T 13-10-2018 CDG55_05230 055c60e26f10944ffebaf41aebe05297 382 Gene3D G3DSA:2.40.30.170 262 381 1.4E-31 T 13-10-2018 CDG55_04180 d6a3c553ad8cbfc451e6b6fa2c301d54 228 Gene3D G3DSA:3.20.20.70 6 223 7.5E-83 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_04180 d6a3c553ad8cbfc451e6b6fa2c301d54 228 SUPERFAMILY SSF51366 4 219 1.47E-75 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CDG55_04180 d6a3c553ad8cbfc451e6b6fa2c301d54 228 Pfam PF00834 Ribulose-phosphate 3 epimerase family 7 204 5.6E-88 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CDG55_04180 d6a3c553ad8cbfc451e6b6fa2c301d54 228 PIRSF PIRSF001461 1 228 1.9E-102 T 13-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CDG55_04180 d6a3c553ad8cbfc451e6b6fa2c301d54 228 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 217 1.9E-96 T 13-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 CDG55_00675 6acff1aa0a16d680797da27c4699dc00 248 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 6 76 5.2E-21 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family CDG55_00675 6acff1aa0a16d680797da27c4699dc00 248 Pfam PF01609 Transposase DDE domain 87 243 3.2E-21 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDG55_00690 34db60cde8c5683d45f7a653bf2f3708 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 315 331 1.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_00690 34db60cde8c5683d45f7a653bf2f3708 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 300 315 1.8E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_00690 34db60cde8c5683d45f7a653bf2f3708 339 SUPERFAMILY SSF46689 284 334 2.46E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_00690 34db60cde8c5683d45f7a653bf2f3708 339 Gene3D G3DSA:1.10.10.60 230 338 5.4E-21 T 13-10-2018 CDG55_00690 34db60cde8c5683d45f7a653bf2f3708 339 SMART SM00342 249 331 7.7E-21 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_00690 34db60cde8c5683d45f7a653bf2f3708 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 21 203 8.8E-32 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_00690 34db60cde8c5683d45f7a653bf2f3708 339 Pfam PF12833 Helix-turn-helix domain 258 332 8.8E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 SUPERFAMILY SSF109604 810 903 3.14E-6 T 13-10-2018 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 SUPERFAMILY SSF109604 568 644 1.54E-9 T 13-10-2018 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 Gene3D G3DSA:1.10.3210.10 794 924 4.1E-22 T 13-10-2018 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 SMART SM00471 570 886 1.1E-5 T 13-10-2018 IPR003607 HD/PDEase domain CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 Gene3D G3DSA:3.30.450.40 411 547 8.0E-8 T 13-10-2018 IPR029016 GAF-like domain superfamily CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 Gene3D G3DSA:1.10.3210.10 550 662 9.0E-19 T 13-10-2018 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 Pfam PF01966 HD domain 576 647 1.0E-5 T 13-10-2018 IPR006674 HD domain CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 Pfam PF02743 Cache domain 55 269 4.7E-14 T 13-10-2018 IPR033479 Double Cache domain 1 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 Pfam PF13487 HD domain 803 868 9.6E-20 T 13-10-2018 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 Gene3D G3DSA:3.30.450.20 131 230 2.8E-11 T 13-10-2018 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 SUPERFAMILY SSF55781 415 554 4.14E-10 T 13-10-2018 CDG55_12190 4ebe299e9c5ea418bae659f05259ef36 950 SUPERFAMILY SSF103190 179 240 7.85E-6 T 13-10-2018 IPR029151 Periplasmic sensor-like domain superfamily CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 518 9.7E-232 T 13-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 504 7.1E-45 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PIRSF PIRSF000238 1 521 4.4E-253 T 13-10-2018 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0050660|GO:0051287 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 316 324 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 405 421 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 338 350 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 353 377 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 444 465 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 479 497 7.6E-63 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 SUPERFAMILY SSF52833 103 195 7.4E-20 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 SUPERFAMILY SSF51905 202 514 1.3E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 SUPERFAMILY SSF52833 1 100 1.07E-27 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 469 491 1.8E-38 T 13-10-2018 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 442 458 1.8E-38 T 13-10-2018 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.8E-38 T 13-10-2018 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 315 333 1.8E-38 T 13-10-2018 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 357 375 1.8E-38 T 13-10-2018 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 Gene3D G3DSA:3.40.30.80 1 199 2.8E-62 T 13-10-2018 CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 Pfam PF13192 Thioredoxin domain 119 194 1.2E-7 T 13-10-2018 IPR012336 Thioredoxin-like fold CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 Gene3D G3DSA:3.50.50.60 212 509 4.0E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07525 271d424585e60991bd0ab3b1d3d5b6e5 521 Gene3D G3DSA:3.50.50.60 327 450 4.0E-107 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07205 ec7a9e119b597aba0fedac24cf4ecd4e 151 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 76 2.2E-12 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CDG55_07205 ec7a9e119b597aba0fedac24cf4ecd4e 151 Gene3D G3DSA:3.40.50.1240 1 145 1.0E-29 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CDG55_07205 ec7a9e119b597aba0fedac24cf4ecd4e 151 SUPERFAMILY SSF53254 1 121 1.31E-20 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CDG55_07205 ec7a9e119b597aba0fedac24cf4ecd4e 151 SMART SM00855 2 111 2.3E-10 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 Gene3D G3DSA:1.10.287.130 206 316 4.7E-19 T 13-10-2018 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 Pfam PF00512 His Kinase A (phospho-acceptor) domain 265 317 3.1E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 360 464 1.9E-21 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 SMART SM00304 209 262 1.8E-4 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 SUPERFAMILY SSF47384 247 319 1.26E-12 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 SMART SM00387 357 465 5.3E-29 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 Gene3D G3DSA:3.30.565.10 323 473 1.2E-33 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 462 1.7E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 443 1.7E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 406 1.7E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 420 1.7E-12 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 SUPERFAMILY SSF55874 323 466 3.93E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 Pfam PF00672 HAMP domain 209 254 5.3E-7 T 13-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 CDG55_02295 4ed2249af4aae9dca7577bf0ce3f4430 487 SMART SM00388 263 321 7.9E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_05890 0fd55d574f0a70c0eead2d971857abeb 149 SMART SM00422 4 73 3.4E-29 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05890 0fd55d574f0a70c0eead2d971857abeb 149 Gene3D G3DSA:1.10.1660.10 2 142 5.9E-33 T 13-10-2018 CDG55_05890 0fd55d574f0a70c0eead2d971857abeb 149 SUPERFAMILY SSF46955 4 127 3.41E-33 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_05890 0fd55d574f0a70c0eead2d971857abeb 149 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 1.4E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05890 0fd55d574f0a70c0eead2d971857abeb 149 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 1.4E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05890 0fd55d574f0a70c0eead2d971857abeb 149 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 1.4E-13 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_05890 0fd55d574f0a70c0eead2d971857abeb 149 Pfam PF13411 MerR HTH family regulatory protein 5 69 7.2E-19 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_10640 ae5f35da131324718c68e1714a88ac0d 347 Gene3D G3DSA:2.40.40.20 276 342 4.3E-6 T 13-10-2018 CDG55_10640 ae5f35da131324718c68e1714a88ac0d 347 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 341 2.4E-140 T 13-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 CDG55_10640 ae5f35da131324718c68e1714a88ac0d 347 SUPERFAMILY SSF55729 1 341 1.27E-123 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_10640 ae5f35da131324718c68e1714a88ac0d 347 Gene3D G3DSA:3.40.630.30 1 275 1.6E-111 T 13-10-2018 CDG55_10640 ae5f35da131324718c68e1714a88ac0d 347 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 341 1.1E-149 T 13-10-2018 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 CDG55_10640 ae5f35da131324718c68e1714a88ac0d 347 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 339 1.3E-134 T 13-10-2018 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 CDG55_06600 8da582bba9d81b85201eee6517d63df3 701 Pfam PF02554 Carbon starvation protein CstA 38 414 3.4E-170 T 13-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 CDG55_06600 8da582bba9d81b85201eee6517d63df3 701 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 469 597 4.4E-32 T 13-10-2018 IPR025299 CstA, C-terminal domain CDG55_03125 b4311633d7a31f801366eec486972e3b 274 PIRSF PIRSF002158 10 274 7.1E-103 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 Gene3D G3DSA:2.40.50.140 1 114 2.1E-49 T 13-10-2018 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 45.538 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 249 4.7E-54 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 1.0E-125 T 13-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 Gene3D G3DSA:2.30.30.30 115 195 1.1E-30 T 13-10-2018 IPR014722 Ribosomal protein L2, domain 2 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 SUPERFAMILY SSF50104 126 269 3.97E-57 T 13-10-2018 IPR008991 Translation protein SH3-like domain superfamily CDG55_03125 b4311633d7a31f801366eec486972e3b 274 SMART SM01382 124 251 9.4E-86 T 13-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 Gene3D G3DSA:4.10.950.10 196 273 2.1E-34 T 13-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 SUPERFAMILY SSF50249 3 124 4.11E-49 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03125 b4311633d7a31f801366eec486972e3b 274 SMART SM01383 42 118 7.4E-47 T 13-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03125 b4311633d7a31f801366eec486972e3b 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 6.7E-34 T 13-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_08185 2f1fa86251488ccdcda4919541569b69 339 SMART SM00342 254 336 4.4E-15 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_08185 2f1fa86251488ccdcda4919541569b69 339 SUPERFAMILY SSF46689 293 338 1.21E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_08185 2f1fa86251488ccdcda4919541569b69 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 320 336 1.0E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_08185 2f1fa86251488ccdcda4919541569b69 339 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 305 320 1.0E-5 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_08185 2f1fa86251488ccdcda4919541569b69 339 Pfam PF12833 Helix-turn-helix domain 263 337 4.4E-15 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_08185 2f1fa86251488ccdcda4919541569b69 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 19 196 2.7E-12 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_08185 2f1fa86251488ccdcda4919541569b69 339 Gene3D G3DSA:1.10.10.60 233 339 1.5E-19 T 13-10-2018 CDG55_02565 b74dbfecc803315f43063b6ea564891e 131 Pfam PF05523 WxcM-like, C-terminal 4 130 2.6E-51 T 13-10-2018 IPR008894 WxcM-like, C-terminal KEGG: 00523+5.3.2.3|MetaCyc: PWY-6953|MetaCyc: PWY-7688 CDG55_02565 b74dbfecc803315f43063b6ea564891e 131 Gene3D G3DSA:2.60.120.10 1 131 4.7E-52 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_02565 b74dbfecc803315f43063b6ea564891e 131 SUPERFAMILY SSF51182 4 130 1.1E-39 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CDG55_11495 2bf490c2d4305995cadbdf346f3dc4de 127 SUPERFAMILY SSF52172 6 126 1.71E-38 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_11495 2bf490c2d4305995cadbdf346f3dc4de 127 Pfam PF00072 Response regulator receiver domain 10 122 2.8E-27 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11495 2bf490c2d4305995cadbdf346f3dc4de 127 Gene3D G3DSA:3.40.50.12740 7 127 3.0E-40 T 13-10-2018 CDG55_11495 2bf490c2d4305995cadbdf346f3dc4de 127 SMART SM00448 8 121 1.3E-38 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_13110 7b1cd1674939e6d1566b58762e0fd45a 207 Gene3D G3DSA:2.30.270.10 111 178 4.4E-13 T 13-10-2018 IPR023361 DUF1285, beta-roll domain superfamily CDG55_13110 7b1cd1674939e6d1566b58762e0fd45a 207 Pfam PF06938 Protein of unknown function (DUF1285) 60 200 8.7E-45 T 13-10-2018 IPR010707 Protein of unknown function DUF1285 CDG55_13110 7b1cd1674939e6d1566b58762e0fd45a 207 PIRSF PIRSF029557 14 207 1.1E-39 T 13-10-2018 IPR010707 Protein of unknown function DUF1285 CDG55_13110 7b1cd1674939e6d1566b58762e0fd45a 207 Gene3D G3DSA:3.10.540.10 20 110 8.0E-32 T 13-10-2018 CDG55_14760 0a9855cfa79c7902f5ccd7713c3ff2c2 370 Gene3D G3DSA:3.40.50.720 1 249 4.0E-83 T 13-10-2018 CDG55_14760 0a9855cfa79c7902f5ccd7713c3ff2c2 370 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 189 7.7E-13 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CDG55_14760 0a9855cfa79c7902f5ccd7713c3ff2c2 370 SUPERFAMILY SSF51182 239 365 3.57E-20 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CDG55_14760 0a9855cfa79c7902f5ccd7713c3ff2c2 370 SUPERFAMILY SSF51735 1 221 7.65E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_14760 0a9855cfa79c7902f5ccd7713c3ff2c2 370 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 254 354 0.001 T 13-10-2018 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 CDG55_14760 0a9855cfa79c7902f5ccd7713c3ff2c2 370 Gene3D G3DSA:2.60.120.10 251 367 8.6E-28 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_11610 5908e614e2fd9970b52111b11f17fd14 391 SUPERFAMILY SSF53901 3 268 7.61E-82 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_11610 5908e614e2fd9970b52111b11f17fd14 391 Pfam PF02803 Thiolase, C-terminal domain 269 389 3.2E-44 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CDG55_11610 5908e614e2fd9970b52111b11f17fd14 391 Pfam PF00108 Thiolase, N-terminal domain 4 260 3.6E-89 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CDG55_11610 5908e614e2fd9970b52111b11f17fd14 391 Gene3D G3DSA:3.40.47.10 5 274 9.2E-143 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_11610 5908e614e2fd9970b52111b11f17fd14 391 PIRSF PIRSF000429 1 391 3.7E-116 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_11610 5908e614e2fd9970b52111b11f17fd14 391 SUPERFAMILY SSF53901 269 390 1.05E-39 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_11610 5908e614e2fd9970b52111b11f17fd14 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 389 1.4E-131 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_11610 5908e614e2fd9970b52111b11f17fd14 391 Gene3D G3DSA:3.40.47.10 126 388 9.2E-143 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_02690 f6deb14c4707f620eae293c203b73a2c 154 Pfam PF12019 Type II transport protein GspH 44 142 1.3E-8 T 13-10-2018 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 CDG55_02690 f6deb14c4707f620eae293c203b73a2c 154 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 1.4E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02690 f6deb14c4707f620eae293c203b73a2c 154 Gene3D G3DSA:3.30.700.10 7 150 3.5E-13 T 13-10-2018 CDG55_02690 f6deb14c4707f620eae293c203b73a2c 154 SUPERFAMILY SSF54523 7 134 1.26E-13 T 13-10-2018 CDG55_02690 f6deb14c4707f620eae293c203b73a2c 154 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 26 2.9E-10 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_05140 d1edfaecff45efbe7038f7d9f1a56c8b 282 SUPERFAMILY SSF56235 2 253 2.51E-47 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_05140 d1edfaecff45efbe7038f7d9f1a56c8b 282 Pfam PF13230 Glutamine amidotransferases class-II 1 262 4.7E-121 T 13-10-2018 IPR026869 Putative glutamine amidotransferase type 2 CDG55_05140 d1edfaecff45efbe7038f7d9f1a56c8b 282 Gene3D G3DSA:3.60.20.10 1 258 3.6E-94 T 13-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal CDG55_08465 6a1440f91d97a90bef482ba6bb90e05e 138 Pfam PF12680 SnoaL-like domain 11 106 1.3E-9 T 13-10-2018 IPR037401 SnoaL-like domain CDG55_08465 6a1440f91d97a90bef482ba6bb90e05e 138 Gene3D G3DSA:3.10.450.50 2 135 5.8E-46 T 13-10-2018 CDG55_08465 6a1440f91d97a90bef482ba6bb90e05e 138 SUPERFAMILY SSF54427 5 114 1.45E-21 T 13-10-2018 IPR032710 NTF2-like domain superfamily CDG55_00325 c28f1cac84aed9dc75e93b3e845005b7 180 Gene3D G3DSA:3.40.50.300 1 179 8.4E-47 T 13-10-2018 CDG55_00325 c28f1cac84aed9dc75e93b3e845005b7 180 Pfam PF13238 AAA domain 3 135 2.7E-9 T 13-10-2018 CDG55_00325 c28f1cac84aed9dc75e93b3e845005b7 180 SUPERFAMILY SSF52540 1 177 3.86E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00160 47ab64e096cd625260e87b055bce5bc9 312 Gene3D G3DSA:1.10.10.10 142 234 6.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_00160 47ab64e096cd625260e87b055bce5bc9 312 SUPERFAMILY SSF46785 129 230 1.28E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00160 47ab64e096cd625260e87b055bce5bc9 312 Gene3D G3DSA:1.10.10.10 1 141 4.1E-41 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_00160 47ab64e096cd625260e87b055bce5bc9 312 SUPERFAMILY SSF46785 4 129 2.09E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00160 47ab64e096cd625260e87b055bce5bc9 312 Pfam PF01051 Initiator Replication protein 2 225 6.5E-53 T 13-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 CDG55_11970 d6464023f234349abca6b02884b98ee0 111 Gene3D G3DSA:3.90.580.10 31 109 5.1E-18 T 13-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 CDG55_11970 d6464023f234349abca6b02884b98ee0 111 SMART SM00400 54 105 7.0E-11 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CDG55_11970 d6464023f234349abca6b02884b98ee0 111 Pfam PF01807 CHC2 zinc finger 47 105 1.1E-13 T 13-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 CDG55_11970 d6464023f234349abca6b02884b98ee0 111 SUPERFAMILY SSF57783 31 107 1.63E-18 T 13-10-2018 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 Gene3D G3DSA:1.25.40.10 154 421 1.2E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 SUPERFAMILY SSF48452 355 549 5.06E-13 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 Gene3D G3DSA:1.25.40.10 41 153 1.0E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 SUPERFAMILY SSF81901 92 308 1.15E-14 T 13-10-2018 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 Gene3D G3DSA:1.25.40.10 433 565 1.6E-11 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 SMART SM00028 116 149 16.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 SMART SM00028 488 521 61.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 SMART SM00028 182 215 240.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 SMART SM00028 385 418 24.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 SMART SM00028 350 383 340.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_04820 87eb2b1c13cd75f1e42eb7b9ce65366c 572 SMART SM00028 216 249 420.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_08695 359f4a83297b4045fb0b484ac09ef9ea 137 Gene3D G3DSA:3.30.428.10 1 137 1.4E-37 T 13-10-2018 IPR036265 HIT-like superfamily CDG55_08695 359f4a83297b4045fb0b484ac09ef9ea 137 Pfam PF01230 HIT domain 14 109 7.0E-26 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CDG55_08695 359f4a83297b4045fb0b484ac09ef9ea 137 SUPERFAMILY SSF54197 1 137 2.32E-38 T 13-10-2018 IPR036265 HIT-like superfamily CDG55_08695 359f4a83297b4045fb0b484ac09ef9ea 137 PRINTS PR00332 Histidine triad family signature 29 47 9.5E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CDG55_08695 359f4a83297b4045fb0b484ac09ef9ea 137 PRINTS PR00332 Histidine triad family signature 96 106 9.5E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CDG55_08695 359f4a83297b4045fb0b484ac09ef9ea 137 PRINTS PR00332 Histidine triad family signature 8 24 9.5E-18 T 13-10-2018 IPR001310 Histidine triad (HIT) protein CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 97 368 1.1E-107 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 SUPERFAMILY SSF47364 67 147 1.3E-19 T 13-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 96 369 60.224 T 13-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 Gene3D G3DSA:1.20.120.140 69 367 4.3E-115 T 13-10-2018 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 Gene3D G3DSA:3.40.50.300 166 357 4.3E-115 T 13-10-2018 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 SMART SM00962 168 369 4.7E-123 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 SMART SM00382 167 347 4.2E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 SMART SM00963 72 153 1.5E-25 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 Pfam PF00448 SRP54-type protein, GTPase domain 169 368 3.2E-77 T 13-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 Pfam PF02881 SRP54-type protein, helical bundle domain 87 149 6.7E-11 T 13-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 CDG55_08285 b40d4d6cfa30b18597c361d9ac8e993a 372 SUPERFAMILY SSF52540 166 369 1.93E-52 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05175 cba0d4d3cc48612e0ba48afcf6da3cea 345 Gene3D G3DSA:3.30.450.90 1 100 5.3E-37 T 13-10-2018 CDG55_05175 cba0d4d3cc48612e0ba48afcf6da3cea 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 1.9E-154 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 CDG55_05175 cba0d4d3cc48612e0ba48afcf6da3cea 345 SUPERFAMILY SSF52540 5 333 2.17E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05175 cba0d4d3cc48612e0ba48afcf6da3cea 345 SMART SM00382 122 247 4.8E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_05175 cba0d4d3cc48612e0ba48afcf6da3cea 345 Pfam PF00437 Type II/IV secretion system protein 12 269 3.8E-46 T 13-10-2018 IPR001482 Type II/IV secretion system protein CDG55_05175 cba0d4d3cc48612e0ba48afcf6da3cea 345 Gene3D G3DSA:3.40.50.300 101 345 8.8E-106 T 13-10-2018 CDG55_14200 5b7b90b6147c8dd7618aca272d6b72ba 696 SUPERFAMILY SSF56935 42 696 5.13E-75 T 13-10-2018 CDG55_14200 5b7b90b6147c8dd7618aca272d6b72ba 696 Gene3D G3DSA:2.40.170.20 165 696 9.3E-52 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_14200 5b7b90b6147c8dd7618aca272d6b72ba 696 Gene3D G3DSA:2.170.130.10 41 160 8.3E-11 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_14200 5b7b90b6147c8dd7618aca272d6b72ba 696 Pfam PF00593 TonB dependent receptor 211 695 8.9E-33 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_14200 5b7b90b6147c8dd7618aca272d6b72ba 696 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 59 696 2.1E-206 T 13-10-2018 IPR010100 TonB-dependent copper receptor CDG55_14200 5b7b90b6147c8dd7618aca272d6b72ba 696 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 150 1.4E-11 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_01660 914545be4b4b39e88467d7dccfde84cd 540 Pfam PF02653 Branched-chain amino acid transport system / permease component 248 523 4.9E-50 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CDG55_01660 914545be4b4b39e88467d7dccfde84cd 540 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 247 537 7.1E-128 T 13-10-2018 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type CDG55_06650 fe92fc177af5d8ab39c086dde953720c 447 Hamap MF_00581 Argininosuccinate synthase [argG]. 4 446 68.353 T 13-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_06650 fe92fc177af5d8ab39c086dde953720c 447 Gene3D G3DSA:3.90.1260.10 77 370 5.4E-118 T 13-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDG55_06650 fe92fc177af5d8ab39c086dde953720c 447 Gene3D G3DSA:3.40.50.620 17 194 5.4E-118 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_06650 fe92fc177af5d8ab39c086dde953720c 447 TIGRFAM TIGR00032 argG: argininosuccinate synthase 16 422 1.4E-163 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDG55_06650 fe92fc177af5d8ab39c086dde953720c 447 Gene3D G3DSA:1.10.287.400 380 443 1.9E-31 T 13-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_06650 fe92fc177af5d8ab39c086dde953720c 447 Pfam PF00764 Arginosuccinate synthase 19 412 4.7E-60 T 13-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 CDG55_06650 fe92fc177af5d8ab39c086dde953720c 447 SUPERFAMILY SSF52402 7 191 1.85E-34 T 13-10-2018 CDG55_06650 fe92fc177af5d8ab39c086dde953720c 447 SUPERFAMILY SSF69864 193 444 3.66E-81 T 13-10-2018 CDG55_11185 a024942c7841dd828641289269130ed8 153 Pfam PF01957 NfeD-like C-terminal, partner-binding 9 150 1.4E-13 T 13-10-2018 IPR002810 NfeD-like, C-terminal domain CDG55_11185 a024942c7841dd828641289269130ed8 153 Gene3D G3DSA:2.40.50.140 77 153 1.8E-9 T 13-10-2018 CDG55_11185 a024942c7841dd828641289269130ed8 153 SUPERFAMILY SSF141322 84 149 1.44E-6 T 13-10-2018 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 548 1051 4.8E-222 T 13-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 Pfam PF00171 Aldehyde dehydrogenase family 596 1048 1.9E-116 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 SUPERFAMILY SSF81935 26 198 6.28E-62 T 13-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 Gene3D G3DSA:3.20.20.220 25 123 1.8E-9 T 13-10-2018 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 Gene3D G3DSA:3.20.20.220 157 548 5.3E-148 T 13-10-2018 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 SUPERFAMILY SSF51730 199 551 3.92E-116 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 85 196 1.8E-44 T 13-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 PIRSF PIRSF000197 14 1251 0.0 T 13-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 SUPERFAMILY SSF53720 577 1051 9.42E-126 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 Pfam PF01619 Proline dehydrogenase 207 507 1.4E-96 T 13-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 Gene3D G3DSA:3.40.605.10 571 1051 3.7E-143 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_07755 62a17c7741a9c1286cf05c28eb17e36b 1253 Gene3D G3DSA:3.40.309.10 825 1022 3.7E-143 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CDG55_06125 306ce637c8491c534b89eb9fca4008be 443 Gene3D G3DSA:3.40.190.10 29 426 1.4E-115 T 13-10-2018 CDG55_06125 306ce637c8491c534b89eb9fca4008be 443 Pfam PF13379 NMT1-like family 24 302 7.7E-83 T 13-10-2018 CDG55_06125 306ce637c8491c534b89eb9fca4008be 443 Gene3D G3DSA:3.40.190.10 114 431 1.4E-115 T 13-10-2018 CDG55_06125 306ce637c8491c534b89eb9fca4008be 443 SUPERFAMILY SSF53850 25 289 2.76E-21 T 13-10-2018 CDG55_05130 57143fd7471ba66fcd6f2fa93393f775 299 PIRSF PIRSF000728 12 295 7.3E-109 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_05130 57143fd7471ba66fcd6f2fa93393f775 299 Pfam PF00696 Amino acid kinase family 27 272 1.5E-45 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CDG55_05130 57143fd7471ba66fcd6f2fa93393f775 299 SUPERFAMILY SSF53633 8 295 1.3E-92 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_05130 57143fd7471ba66fcd6f2fa93393f775 299 TIGRFAM TIGR00761 argB: acetylglutamate kinase 28 270 2.7E-80 T 13-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_05130 57143fd7471ba66fcd6f2fa93393f775 299 Gene3D G3DSA:3.40.1160.10 7 299 2.2E-98 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_05130 57143fd7471ba66fcd6f2fa93393f775 299 Hamap MF_00082 Acetylglutamate kinase [argB]. 26 288 50.789 T 13-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_15025 5529363adc88319c6f80610f92f8f9d6 294 Gene3D G3DSA:3.60.15.10 7 288 1.3E-30 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_15025 5529363adc88319c6f80610f92f8f9d6 294 SMART SM00849 32 243 1.7E-4 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_15025 5529363adc88319c6f80610f92f8f9d6 294 Pfam PF13483 Beta-lactamase superfamily domain 27 243 2.7E-10 T 13-10-2018 CDG55_15025 5529363adc88319c6f80610f92f8f9d6 294 SUPERFAMILY SSF56281 29 246 2.44E-18 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 14 411 40.157 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 410 2.0E-158 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 279 7.7E-74 T 13-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 Gene3D G3DSA:3.20.20.10 33 274 4.5E-144 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 29 368 7.2E-21 T 13-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 74 91 4.0E-30 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 297 315 4.0E-30 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 378 400 4.0E-30 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 163 172 4.0E-30 T 13-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 Gene3D G3DSA:2.40.37.10 16 407 4.5E-144 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 SUPERFAMILY SSF51419 25 281 6.54E-80 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 368 381 7.1E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 269 288 7.1E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 76 88 7.1E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 189 202 7.1E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 56 74 7.1E-24 T 13-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 CDG55_10470 af4229b806329a85ecc091a7d4d08b62 416 SUPERFAMILY SSF50621 254 412 1.53E-48 T 13-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 17 311 21.533 T 13-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 377 416 7.3E-14 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 Pfam PF01171 PP-loop family 32 204 3.2E-48 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 Pfam PF09179 TilS substrate binding domain 252 319 3.3E-10 T 13-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 SMART SM00977 373 447 6.9E-8 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 Gene3D G3DSA:1.20.59.20 239 322 8.7E-17 T 13-10-2018 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 Gene3D G3DSA:3.40.50.620 19 238 9.2E-63 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 Pfam PF11734 TilS substrate C-terminal domain 377 423 4.4E-6 T 13-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 SUPERFAMILY SSF56037 347 441 7.32E-13 T 13-10-2018 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 33 208 2.1E-49 T 13-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 SUPERFAMILY SSF82829 240 322 1.07E-18 T 13-10-2018 CDG55_03955 6c445ac7a1e8def54dc8db7296eeec9e 463 SUPERFAMILY SSF52402 19 237 2.43E-52 T 13-10-2018 CDG55_01945 f1874f8f7b2109201922a6747144245a 246 Gene3D G3DSA:3.40.50.360 3 184 3.6E-40 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_01945 f1874f8f7b2109201922a6747144245a 246 Pfam PF03358 NADPH-dependent FMN reductase 12 156 6.7E-31 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDG55_01945 f1874f8f7b2109201922a6747144245a 246 SUPERFAMILY SSF52218 7 182 4.35E-31 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_01945 f1874f8f7b2109201922a6747144245a 246 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 12 184 2.1E-70 T 13-10-2018 IPR019912 FMN reductase, MsuE-like CDG55_03885 f79141b25ddd733ca823b9f1b1cbaeec 141 Pfam PF09335 SNARE associated Golgi protein 22 129 1.1E-13 T 13-10-2018 IPR032816 SNARE associated Golgi protein CDG55_03885 f79141b25ddd733ca823b9f1b1cbaeec 141 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 2 136 6.0E-8 T 13-10-2018 IPR020143 Uncharacterised protein family, RP436 CDG55_02665 b06dfbb0b50050480dc47829fa533efb 129 SUPERFAMILY SSF55298 1 126 2.04E-44 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CDG55_02665 b06dfbb0b50050480dc47829fa533efb 129 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 4 124 8.6E-48 T 13-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 CDG55_02665 b06dfbb0b50050480dc47829fa533efb 129 Gene3D G3DSA:3.30.1330.40 3 125 4.2E-50 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CDG55_02665 b06dfbb0b50050480dc47829fa533efb 129 Pfam PF01042 Endoribonuclease L-PSP 9 124 2.2E-37 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CDG55_03665 c15d420f727881769473fbacf50bbcb4 202 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 25 198 9.3E-27 T 13-10-2018 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like CDG55_03665 c15d420f727881769473fbacf50bbcb4 202 Gene3D G3DSA:2.60.120.590 11 202 7.0E-59 T 13-10-2018 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily CDG55_03665 c15d420f727881769473fbacf50bbcb4 202 SUPERFAMILY SSF51197 11 201 4.12E-60 T 13-10-2018 CDG55_10085 86035123de5c435a95a70efc10857d5b 125 Pfam PF16137 Domain of unknown function (DUF4845) 30 112 2.9E-16 T 13-10-2018 IPR032314 Protein of unknown function DUF4845 CDG55_07555 8bb24c45249e9eeba0effc7e993b6589 187 Gene3D G3DSA:3.40.30.10 1 186 1.6E-58 T 13-10-2018 CDG55_07555 8bb24c45249e9eeba0effc7e993b6589 187 Pfam PF00578 AhpC/TSA family 6 132 1.0E-30 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_07555 8bb24c45249e9eeba0effc7e993b6589 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 182 7.5E-7 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_07555 8bb24c45249e9eeba0effc7e993b6589 187 PIRSF PIRSF000239 1 187 4.9E-46 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_07555 8bb24c45249e9eeba0effc7e993b6589 187 SUPERFAMILY SSF52833 3 186 2.9E-53 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_07555 8bb24c45249e9eeba0effc7e993b6589 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 8.3E-98 T 13-10-2018 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDG55_11615 7b425ff1f0b2ccc32eb23011bb91f742 147 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 139 2.3E-4 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDG55_11615 7b425ff1f0b2ccc32eb23011bb91f742 147 SUPERFAMILY SSF54593 1 142 1.94E-26 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDG55_11615 7b425ff1f0b2ccc32eb23011bb91f742 147 Gene3D G3DSA:3.10.180.10 7 147 7.6E-41 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDG55_09410 8891838b298d7439b5c866143ff54592 234 SUPERFAMILY SSF51206 9 139 9.03E-28 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CDG55_09410 8891838b298d7439b5c866143ff54592 234 SMART SM00100 15 136 6.7E-6 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CDG55_09410 8891838b298d7439b5c866143ff54592 234 Pfam PF13545 Crp-like helix-turn-helix domain 153 225 5.6E-16 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDG55_09410 8891838b298d7439b5c866143ff54592 234 Gene3D G3DSA:1.10.10.10 151 231 1.9E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_09410 8891838b298d7439b5c866143ff54592 234 SMART SM00419 171 219 4.1E-4 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDG55_09410 8891838b298d7439b5c866143ff54592 234 SUPERFAMILY SSF46785 150 227 1.08E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_09410 8891838b298d7439b5c866143ff54592 234 Pfam PF00027 Cyclic nucleotide-binding domain 35 121 1.3E-15 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CDG55_09410 8891838b298d7439b5c866143ff54592 234 Gene3D G3DSA:2.60.120.10 5 144 8.3E-21 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_03595 43f7e24918ee324962c3d712ebfe3175 137 Gene3D G3DSA:3.10.129.10 1 134 6.8E-37 T 13-10-2018 CDG55_03595 43f7e24918ee324962c3d712ebfe3175 137 SUPERFAMILY SSF54637 8 131 2.91E-34 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_03595 43f7e24918ee324962c3d712ebfe3175 137 Pfam PF03061 Thioesterase superfamily 27 99 1.0E-16 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CDG55_04090 30dadfe1950c64312606cd7bbb6b88f0 361 Pfam PF00155 Aminotransferase class I and II 31 356 8.6E-58 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDG55_04090 30dadfe1950c64312606cd7bbb6b88f0 361 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 360 58.116 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CDG55_04090 30dadfe1950c64312606cd7bbb6b88f0 361 SUPERFAMILY SSF53383 27 356 7.07E-76 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_04090 30dadfe1950c64312606cd7bbb6b88f0 361 Gene3D G3DSA:3.90.1150.10 26 350 4.2E-111 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_04090 30dadfe1950c64312606cd7bbb6b88f0 361 Gene3D G3DSA:3.40.640.10 44 268 4.2E-111 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_04090 30dadfe1950c64312606cd7bbb6b88f0 361 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 13 358 1.6E-96 T 13-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 CDG55_05310 141bd457665a5ab50abcb7306ede7d98 343 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 12 172 2.4E-41 T 13-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain CDG55_05310 141bd457665a5ab50abcb7306ede7d98 343 Gene3D G3DSA:3.40.50.300 7 204 2.1E-45 T 13-10-2018 CDG55_05310 141bd457665a5ab50abcb7306ede7d98 343 SUPERFAMILY SSF52540 12 198 5.28E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06230 080ffae7596a447035e024db2f314df5 304 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 31 259 2.6E-64 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CDG55_06230 080ffae7596a447035e024db2f314df5 304 SUPERFAMILY SSF52402 7 212 2.05E-73 T 13-10-2018 CDG55_06230 080ffae7596a447035e024db2f314df5 304 PIRSF PIRSF002936 2 304 1.4E-157 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDG55_06230 080ffae7596a447035e024db2f314df5 304 Gene3D G3DSA:3.40.50.620 9 214 1.7E-63 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_06230 080ffae7596a447035e024db2f314df5 304 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 11 304 2.2E-161 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDG55_06230 080ffae7596a447035e024db2f314df5 304 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 6 304 57.043 T 13-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 CDG55_14315 16ec18b39733a9c99145af160aff7ba4 269 Gene3D G3DSA:1.10.3470.10 34 262 1.2E-5 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CDG55_14315 16ec18b39733a9c99145af160aff7ba4 269 Pfam PF00950 ABC 3 transport family 6 259 1.2E-52 T 13-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 CDG55_14315 16ec18b39733a9c99145af160aff7ba4 269 SUPERFAMILY SSF81345 4 256 1.57E-31 T 13-10-2018 IPR037294 ABC transporter, BtuC-like CDG55_03875 a13a9324180db343b8db7bcceef8d9ac 157 Gene3D G3DSA:2.60.40.790 33 138 2.0E-19 T 13-10-2018 IPR008978 HSP20-like chaperone CDG55_03875 a13a9324180db343b8db7bcceef8d9ac 157 SUPERFAMILY SSF49764 32 137 9.42E-17 T 13-10-2018 IPR008978 HSP20-like chaperone CDG55_03875 a13a9324180db343b8db7bcceef8d9ac 157 Pfam PF00011 Hsp20/alpha crystallin family 42 137 5.1E-13 T 13-10-2018 IPR002068 Alpha crystallin/Hsp20 domain CDG55_13170 7dbe97afe130f95fe311edcfcc33a2e4 519 Pfam PF00795 Carbon-nitrogen hydrolase 228 476 9.3E-30 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CDG55_13170 7dbe97afe130f95fe311edcfcc33a2e4 519 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 73 458 1.2E-92 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 CDG55_13170 7dbe97afe130f95fe311edcfcc33a2e4 519 SUPERFAMILY SSF56317 224 489 1.18E-43 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CDG55_13170 7dbe97afe130f95fe311edcfcc33a2e4 519 Gene3D G3DSA:3.60.110.10 247 481 3.0E-14 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CDG55_13170 7dbe97afe130f95fe311edcfcc33a2e4 519 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 20 496 22.218 T 13-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 CDG55_01875 52762d557b4d4ec5782a2ec0229d2e17 566 SUPERFAMILY SSF64182 52 449 4.58E-113 T 13-10-2018 IPR038763 DHH phosphoesterase superfamily CDG55_01875 52762d557b4d4ec5782a2ec0229d2e17 566 Gene3D G3DSA:3.90.1640.30 46 318 6.9E-89 T 13-10-2018 CDG55_01875 52762d557b4d4ec5782a2ec0229d2e17 566 Pfam PF01368 DHH family 71 206 4.0E-10 T 13-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 CDG55_01875 52762d557b4d4ec5782a2ec0229d2e17 566 Gene3D G3DSA:3.10.310.30 319 450 4.2E-32 T 13-10-2018 CDG55_01875 52762d557b4d4ec5782a2ec0229d2e17 566 Pfam PF02272 DHHA1 domain 314 444 3.5E-25 T 13-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 CDG55_01875 52762d557b4d4ec5782a2ec0229d2e17 566 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 23 563 4.6E-153 T 13-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 CDG55_03080 6521de599d17160c5cbab2f60b393e26 150 Gene3D G3DSA:1.10.10.10 1 135 5.0E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_03080 6521de599d17160c5cbab2f60b393e26 150 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 128 9.9E-26 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CDG55_03080 6521de599d17160c5cbab2f60b393e26 150 Pfam PF02082 Transcriptional regulator 1 81 1.5E-19 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CDG55_03080 6521de599d17160c5cbab2f60b393e26 150 SUPERFAMILY SSF46785 2 128 2.18E-30 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_11260 1ae19f6b5cfd7693c43e9536059d1112 211 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 22 206 32.79 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CDG55_11260 1ae19f6b5cfd7693c43e9536059d1112 211 Pfam PF02669 K+-transporting ATPase, c chain 26 204 4.1E-68 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CDG55_11260 1ae19f6b5cfd7693c43e9536059d1112 211 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 25 205 1.0E-55 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CDG55_11260 1ae19f6b5cfd7693c43e9536059d1112 211 PIRSF PIRSF001296 22 210 8.4E-69 T 13-10-2018 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 8 304 34.081 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 SUPERFAMILY SSF56059 99 302 4.07E-55 T 13-10-2018 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 9 303 4.0E-99 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 Gene3D G3DSA:3.30.470.20 89 289 8.4E-82 T 13-10-2018 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 Pfam PF07478 D-ala D-ala ligase C-terminus 106 300 3.0E-54 T 13-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 Pfam PF01820 D-ala D-ala ligase N-terminus 9 88 2.1E-16 T 13-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 SUPERFAMILY SSF52440 9 99 7.58E-26 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 PIRSF PIRSF039102 6 51 6.9E-8 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 PIRSF PIRSF039102 41 308 2.5E-80 T 13-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_01790 600a6514da0ea3419a790ab570f9a776 308 Gene3D G3DSA:3.40.50.20 1 87 1.4E-32 T 13-10-2018 CDG55_00390 9ce131133e95ea9ad9db72ddcc8c41c7 100 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 12 91 1.3E-8 T 13-10-2018 IPR009241 Toxin HigB-like CDG55_00390 9ce131133e95ea9ad9db72ddcc8c41c7 100 PIRSF PIRSF028744 1 100 2.6E-42 T 13-10-2018 IPR014056 Addiction module killer protein, predicted CDG55_00390 9ce131133e95ea9ad9db72ddcc8c41c7 100 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 3 95 2.1E-40 T 13-10-2018 IPR014056 Addiction module killer protein, predicted CDG55_08545 1c0c31cc53cdc1a227880903ef41f0ec 608 Pfam PF01425 Amidase 33 440 1.0E-93 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_08545 1c0c31cc53cdc1a227880903ef41f0ec 608 Gene3D G3DSA:3.10.490.10 470 606 5.5E-51 T 13-10-2018 CDG55_08545 1c0c31cc53cdc1a227880903ef41f0ec 608 TIGRFAM TIGR02713 allophanate_hyd: allophanate hydrolase 40 597 5.3E-242 T 13-10-2018 IPR014085 Allophanate hydrolase KEGG: 00220+3.5.1.54|KEGG: 00791+3.5.1.54|MetaCyc: PWY-5169|MetaCyc: PWY-5703 CDG55_08545 1c0c31cc53cdc1a227880903ef41f0ec 608 Gene3D G3DSA:1.20.58.1700 297 370 1.0E-162 T 13-10-2018 CDG55_08545 1c0c31cc53cdc1a227880903ef41f0ec 608 Gene3D G3DSA:3.90.1300.10 39 444 1.0E-162 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_08545 1c0c31cc53cdc1a227880903ef41f0ec 608 SUPERFAMILY SSF75304 6 450 1.31E-112 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_02560 49c557191a40f688a1248c78a8b17976 293 SUPERFAMILY SSF53448 6 291 4.96E-90 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_02560 49c557191a40f688a1248c78a8b17976 293 Pfam PF00483 Nucleotidyl transferase 6 242 9.1E-73 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDG55_02560 49c557191a40f688a1248c78a8b17976 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 6 290 8.9E-155 T 13-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 CDG55_02560 49c557191a40f688a1248c78a8b17976 293 Gene3D G3DSA:3.90.550.10 3 293 4.8E-85 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_10935 686e382d7cff9bd2ebcdc3496051be45 163 Pfam PF06945 Protein of unknown function (DUF1289) 11 56 7.1E-14 T 13-10-2018 IPR010710 Protein of unknown function DUF1289 CDG55_02760 a68ad61cf63506534da088e27ad56c02 256 Pfam PF01925 Sulfite exporter TauE/SafE 10 245 1.4E-37 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 TIGRFAM TIGR02653 Lon_rel_chp: conserved hypothetical protein 7 678 0.0 T 13-10-2018 IPR013473 Conserved hypothetical protein CHP02653, peptidase S16 non-peptidase homologue CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 TIGRFAM TIGR02688 TIGR02688: TIGR02688 family protein 13 460 1.1E-186 T 13-10-2018 IPR014061 Conserved hypothetical protein CHP02688 CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 517 673 4.0E-12 T 13-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 SUPERFAMILY SSF52540 219 419 2.55E-6 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 Gene3D G3DSA:3.30.230.10 499 676 3.9E-22 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 SUPERFAMILY SSF54211 498 677 6.83E-24 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 631 649 6.8E-5 T 13-10-2018 CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 608 627 6.8E-5 T 13-10-2018 CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 228 247 6.8E-5 T 13-10-2018 CDG55_00880 5f07602d99af3fafacb02d0cf4231ec2 679 Pfam PF13337 Putative ATP-dependent Lon protease 15 469 2.0E-204 T 13-10-2018 IPR014061 Conserved hypothetical protein CHP02688 CDG55_01925 136456202ff163103e3165653de15237 647 SUPERFAMILY SSF56801 11 644 7.06E-187 T 13-10-2018 CDG55_01925 136456202ff163103e3165653de15237 647 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 22 79 4.5E-18 T 13-10-2018 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857 CDG55_01925 136456202ff163103e3165653de15237 647 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 19 641 1.7E-304 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 CDG55_01925 136456202ff163103e3165653de15237 647 Gene3D G3DSA:3.30.300.30 516 644 1.5E-30 T 13-10-2018 CDG55_01925 136456202ff163103e3165653de15237 647 Pfam PF13193 AMP-binding enzyme C-terminal domain 529 607 1.2E-25 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CDG55_01925 136456202ff163103e3165653de15237 647 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 1 643 52.04 T 13-10-2018 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00630+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-5108|MetaCyc: PWY-5132|MetaCyc: PWY-5133|MetaCyc: PWY-6672|MetaCyc: PWY-7118|MetaCyc: PWY-7857|Reactome: R-HSA-71384 CDG55_01925 136456202ff163103e3165653de15237 647 Pfam PF00501 AMP-binding enzyme 81 520 4.1E-95 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CDG55_01925 136456202ff163103e3165653de15237 647 Gene3D G3DSA:3.40.50.12780 48 513 1.2E-110 T 13-10-2018 CDG55_03895 21b7bc3273b581765b669b4dee283d10 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 3 63 7.9E-25 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDG55_03895 21b7bc3273b581765b669b4dee283d10 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 16.394 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDG55_03895 21b7bc3273b581765b669b4dee283d10 64 Gene3D G3DSA:2.40.50.530 4 63 4.7E-21 T 13-10-2018 CDG55_03895 21b7bc3273b581765b669b4dee283d10 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 7.1E-19 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDG55_03895 21b7bc3273b581765b669b4dee283d10 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 7.1E-19 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDG55_03895 21b7bc3273b581765b669b4dee283d10 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 7.1E-19 T 13-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 CDG55_03895 21b7bc3273b581765b669b4dee283d10 64 SUPERFAMILY SSF143034 3 63 4.32E-21 T 13-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03895 21b7bc3273b581765b669b4dee283d10 64 Pfam PF01632 Ribosomal protein L35 3 60 3.2E-22 T 13-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12775 d03d1ae96b30c3398e14f7ce680f483a 659 Gene3D G3DSA:1.10.10.160 109 190 6.6E-71 T 13-10-2018 IPR013986 DExx box DNA helicase domain superfamily CDG55_12775 d03d1ae96b30c3398e14f7ce680f483a 659 Pfam PF13361 UvrD-like helicase C-terminal domain 488 597 1.9E-18 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDG55_12775 d03d1ae96b30c3398e14f7ce680f483a 659 SUPERFAMILY SSF52540 6 628 9.09E-123 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12775 d03d1ae96b30c3398e14f7ce680f483a 659 Gene3D G3DSA:3.40.50.300 10 272 6.6E-71 T 13-10-2018 CDG55_12775 d03d1ae96b30c3398e14f7ce680f483a 659 Pfam PF13361 UvrD-like helicase C-terminal domain 278 411 2.1E-17 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDG55_12775 d03d1ae96b30c3398e14f7ce680f483a 659 Gene3D G3DSA:1.10.486.10 382 522 6.3E-63 T 13-10-2018 CDG55_12775 d03d1ae96b30c3398e14f7ce680f483a 659 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 271 7.7E-54 T 13-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 CDG55_12775 d03d1ae96b30c3398e14f7ce680f483a 659 Gene3D G3DSA:3.40.50.300 282 620 6.3E-63 T 13-10-2018 CDG55_06325 5f3a9d4411f1704b416e73b148bbd147 237 Pfam PF08291 Peptidase M15 137 174 3.0E-5 T 13-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 CDG55_06325 5f3a9d4411f1704b416e73b148bbd147 237 SUPERFAMILY SSF55166 99 229 1.88E-15 T 13-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 CDG55_02555 b63518300c19485f1d8e3025e52f5658 354 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 337 3.8E-154 T 13-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 CDG55_02555 b63518300c19485f1d8e3025e52f5658 354 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 2.5E-98 T 13-10-2018 IPR016040 NAD(P)-binding domain CDG55_02555 b63518300c19485f1d8e3025e52f5658 354 Gene3D G3DSA:3.90.25.10 201 331 1.4E-134 T 13-10-2018 CDG55_02555 b63518300c19485f1d8e3025e52f5658 354 SUPERFAMILY SSF51735 1 345 1.27E-92 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_02555 b63518300c19485f1d8e3025e52f5658 354 Gene3D G3DSA:3.40.50.720 3 323 1.4E-134 T 13-10-2018 CDG55_09960 abade3456c9551ff84a121c7d3c991ea 278 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 7 273 1.3E-92 T 13-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 CDG55_09960 abade3456c9551ff84a121c7d3c991ea 278 Pfam PF02219 Methylenetetrahydrofolate reductase 3 275 3.9E-82 T 13-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 CDG55_09960 abade3456c9551ff84a121c7d3c991ea 278 Gene3D G3DSA:3.20.20.220 1 278 1.0E-92 T 13-10-2018 CDG55_09960 abade3456c9551ff84a121c7d3c991ea 278 SUPERFAMILY SSF51730 3 276 3.14E-88 T 13-10-2018 IPR029041 FAD-linked oxidoreductase-like CDG55_12295 c362bf183511603a847687d499cb7dc7 285 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 283 7.3E-67 T 13-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 CDG55_12295 c362bf183511603a847687d499cb7dc7 285 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 270 38.272 T 13-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 CDG55_12295 c362bf183511603a847687d499cb7dc7 285 Gene3D G3DSA:3.40.50.150 1 285 4.1E-94 T 13-10-2018 CDG55_12295 c362bf183511603a847687d499cb7dc7 285 SUPERFAMILY SSF53335 8 276 1.77E-79 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_01205 42e2c75193fcd2961513fe0970c31e61 335 Gene3D G3DSA:3.40.190.170 37 247 1.2E-12 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily CDG55_01205 42e2c75193fcd2961513fe0970c31e61 335 SUPERFAMILY SSF53850 131 210 6.85E-5 T 13-10-2018 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 Gene3D G3DSA:1.20.58.760 402 600 9.8E-73 T 13-10-2018 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 616 631 7.9E-5 T 13-10-2018 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 197 216 7.9E-5 T 13-10-2018 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 SUPERFAMILY SSF140990 407 602 5.36E-74 T 13-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 Gene3D G3DSA:1.10.8.60 328 401 1.6E-27 T 13-10-2018 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 603 36.656 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 Gene3D G3DSA:3.40.50.300 141 327 3.6E-70 T 13-10-2018 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 103 594 3.4E-233 T 13-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 Pfam PF01434 Peptidase family M41 387 593 2.1E-78 T 13-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 Gene3D G3DSA:2.40.50.920 25 101 1.3E-12 T 13-10-2018 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 SMART SM00382 189 328 1.2E-25 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 193 325 4.8E-46 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 SUPERFAMILY SSF52540 147 396 5.94E-73 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10790 310f09c6071b36c4c37cbcf0c9fa3b63 631 Pfam PF06480 FtsH Extracellular 9 72 6.4E-9 T 13-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 CDG55_07435 44622067b0c741356483f039e358f56b 527 SUPERFAMILY SSF160467 2 69 6.41E-9 T 13-10-2018 CDG55_07435 44622067b0c741356483f039e358f56b 527 Gene3D G3DSA:2.40.100.10 403 522 1.7E-39 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_07435 44622067b0c741356483f039e358f56b 527 Gene3D G3DSA:3.30.1360.40 5 73 5.8E-10 T 13-10-2018 CDG55_07435 44622067b0c741356483f039e358f56b 527 SMART SM00796 1 192 5.0E-72 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CDG55_07435 44622067b0c741356483f039e358f56b 527 SMART SM00797 250 527 1.1E-92 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CDG55_07435 44622067b0c741356483f039e358f56b 527 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 231 517 1.3E-73 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CDG55_07435 44622067b0c741356483f039e358f56b 527 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 251 515 2.5E-75 T 13-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B CDG55_07435 44622067b0c741356483f039e358f56b 527 Gene3D G3DSA:2.40.100.10 74 202 1.6E-46 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_07435 44622067b0c741356483f039e358f56b 527 SUPERFAMILY SSF50891 405 517 1.14E-16 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_07435 44622067b0c741356483f039e358f56b 527 SUPERFAMILY SSF50891 81 202 7.21E-33 T 13-10-2018 IPR029000 Cyclophilin-like domain superfamily CDG55_07435 44622067b0c741356483f039e358f56b 527 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 2 192 3.1E-54 T 13-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 14 50 2.0E-14 T 13-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 PIRSF PIRSF000157 1 937 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 14 935 0.0 T 13-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 SMART SM00861 593 786 5.6E-60 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 Gene3D G3DSA:3.40.50.11610 723 932 4.8E-165 T 13-10-2018 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 Pfam PF02779 Transketolase, pyrimidine binding domain 593 787 8.2E-64 T 13-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 Gene3D G3DSA:3.40.50.970 165 527 5.1E-146 T 13-10-2018 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 Pfam PF00676 Dehydrogenase E1 component 213 515 1.2E-48 T 13-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 SUPERFAMILY SSF52518 575 793 8.05E-48 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 Gene3D G3DSA:3.40.50.12470 556 802 4.8E-165 T 13-10-2018 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 Gene3D G3DSA:1.10.287.1150 82 164 1.8E-25 T 13-10-2018 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 790 935 3.1E-50 T 13-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 CDG55_10890 faf64f8002680d25d24b7af3e5933eb8 946 SUPERFAMILY SSF52518 119 546 2.85E-86 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_06540 da8925f81fc9c3c254e8fbfd8caad57b 256 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 2 242 5.9E-68 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CDG55_06540 da8925f81fc9c3c254e8fbfd8caad57b 256 Gene3D G3DSA:3.40.1210.10 1 255 2.3E-83 T 13-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CDG55_06540 da8925f81fc9c3c254e8fbfd8caad57b 256 Pfam PF01975 Survival protein SurE 3 186 5.7E-57 T 13-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CDG55_06540 da8925f81fc9c3c254e8fbfd8caad57b 256 SUPERFAMILY SSF64167 2 252 1.83E-76 T 13-10-2018 CDG55_06540 da8925f81fc9c3c254e8fbfd8caad57b 256 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 256 35.101 T 13-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 CDG55_07820 e54c158023c06c69b170f18e2b9d1eff 423 Pfam PF13194 Domain of unknown function (DUF4010) 186 395 7.7E-32 T 13-10-2018 IPR025105 Domain of unknown function DUF4010 CDG55_07820 e54c158023c06c69b170f18e2b9d1eff 423 Pfam PF02308 MgtC family 22 136 2.5E-17 T 13-10-2018 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 Pfam PF00175 Oxidoreductase NAD-binding domain 359 464 4.0E-12 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 Gene3D G3DSA:3.40.50.360 27 194 5.3E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 Gene3D G3DSA:3.40.50.80 348 490 7.1E-40 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 382 391 2.2E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 449 457 2.2E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 295 302 2.2E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 395 406 2.2E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 426 442 2.2E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 358 377 2.2E-10 T 13-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 Pfam PF00258 Flavodoxin 46 174 2.2E-24 T 13-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00369 Flavodoxin signature 93 104 4.3E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00369 Flavodoxin signature 124 134 4.3E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 PRINTS PR00369 Flavodoxin signature 45 58 4.3E-7 T 13-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 SUPERFAMILY SSF63380 198 349 1.62E-14 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 SUPERFAMILY SSF52218 44 184 1.82E-37 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_09860 d122f755c2349d38546f380fac83f7f4 490 SUPERFAMILY SSF52343 351 490 3.93E-35 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_08145 01d4dc695300b96f935daf53b8f4ca07 226 Gene3D G3DSA:3.40.50.300 1 226 2.9E-72 T 13-10-2018 CDG55_08145 01d4dc695300b96f935daf53b8f4ca07 226 Pfam PF02224 Cytidylate kinase 6 222 1.5E-63 T 13-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CDG55_08145 01d4dc695300b96f935daf53b8f4ca07 226 SUPERFAMILY SSF52540 5 224 1.45E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08145 01d4dc695300b96f935daf53b8f4ca07 226 Hamap MF_00238 Cytidylate kinase [cmk]. 4 225 31.606 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CDG55_08145 01d4dc695300b96f935daf53b8f4ca07 226 TIGRFAM TIGR00017 cmk: cytidylate kinase 4 220 1.6E-67 T 13-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 6 409 1.4E-116 T 13-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 Gene3D G3DSA:3.30.460.10 2 155 1.8E-45 T 13-10-2018 CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 Gene3D G3DSA:1.10.3090.10 157 399 1.4E-66 T 13-10-2018 CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 SUPERFAMILY SSF81891 157 375 2.88E-39 T 13-10-2018 CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 Pfam PF01743 Poly A polymerase head domain 34 159 2.3E-28 T 13-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 200 247 1.4E-11 T 13-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 Pfam PF12626 Polymerase A arginine-rich C-terminus 296 407 2.0E-27 T 13-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 3 438 33.402 T 13-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 CDG55_03825 9de14bd40d4c0cef50faaf44d2418ace 484 SUPERFAMILY SSF81301 10 156 1.74E-33 T 13-10-2018 CDG55_10375 1d8c73ec3a7e3bfdf0a87afdeb8a6e78 411 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 411 1.3E-152 T 13-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 CDG55_10375 1d8c73ec3a7e3bfdf0a87afdeb8a6e78 411 Pfam PF02687 FtsX-like permease family 298 404 7.3E-11 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CDG55_10375 1d8c73ec3a7e3bfdf0a87afdeb8a6e78 411 Pfam PF12704 MacB-like periplasmic core domain 28 240 9.2E-14 T 13-10-2018 IPR025857 MacB-like periplasmic core domain CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 SUPERFAMILY SSF51735 1 254 2.01E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 Pfam PF00106 short chain dehydrogenase 6 205 9.9E-50 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 Gene3D G3DSA:3.40.50.720 1 256 1.4E-76 T 13-10-2018 CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 197 0.0032 T 13-10-2018 CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 6.6E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 6.6E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 6.6E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 6.6E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 136 152 6.6E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.6E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 181 1.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 142 150 1.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07420 6213f825fe85dd8c53a0d1f4e2994e1a 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.1E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 Gene3D G3DSA:1.20.5.100 192 218 2.3E-20 T 13-10-2018 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 SUPERFAMILY SSF48179 189 284 1.87E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 190 279 7.4E-25 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 PIRSF PIRSF500134 1 350 5.9E-109 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 PIRSF PIRSF500134 338 386 83.0 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 SUPERFAMILY SSF51735 1 192 2.09E-42 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 PIRSF PIRSF000124 1 385 3.1E-122 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 SUPERFAMILY SSF52413 281 384 1.96E-21 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 Gene3D G3DSA:3.40.50.720 1 191 1.2E-56 T 13-10-2018 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 376 3.8E-100 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 169 5.4E-32 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 Gene3D G3DSA:3.40.50.720 221 386 2.8E-55 T 13-10-2018 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 299 377 3.6E-8 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_11930 92cdafe3b7b531aa7bc3dc319f7bc510 386 SMART SM00984 298 385 4.8E-13 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_13035 a45077d1a62d1543ec78c3d34088af6e 84 Pfam PF01197 Ribosomal protein L31 1 78 2.7E-24 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13035 a45077d1a62d1543ec78c3d34088af6e 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 24.306 T 13-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13035 a45077d1a62d1543ec78c3d34088af6e 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 9.1E-17 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13035 a45077d1a62d1543ec78c3d34088af6e 84 SUPERFAMILY SSF143800 1 80 1.02E-21 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_13035 a45077d1a62d1543ec78c3d34088af6e 84 Gene3D G3DSA:2.30.170.50 1 83 6.2E-22 T 13-10-2018 CDG55_13035 a45077d1a62d1543ec78c3d34088af6e 84 PRINTS PR01249 Ribosomal protein L31 signature 44 59 1.7E-14 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13035 a45077d1a62d1543ec78c3d34088af6e 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.7E-14 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13035 a45077d1a62d1543ec78c3d34088af6e 84 PRINTS PR01249 Ribosomal protein L31 signature 59 77 1.7E-14 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 Gene3D G3DSA:3.40.50.300 1 205 6.4E-70 T 13-10-2018 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 Gene3D G3DSA:2.40.30.10 208 336 1.4E-52 T 13-10-2018 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 SUPERFAMILY SSF50447 207 303 6.28E-30 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.5E-14 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 Pfam PF03143 Elongation factor Tu C-terminal domain 300 394 3.1E-34 T 13-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 Gene3D G3DSA:2.40.30.10 340 394 3.5E-28 T 13-10-2018 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 203 1.6E-57 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 PRINTS PR00315 GTP-binding elongation factor signature 94 105 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 PRINTS PR00315 GTP-binding elongation factor signature 58 66 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 PRINTS PR00315 GTP-binding elongation factor signature 78 88 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.4E-24 T 13-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 SUPERFAMILY SSF52540 6 221 1.32E-59 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 395 2.6E-226 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 SUPERFAMILY SSF50465 300 394 7.44E-37 T 13-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 Pfam PF03144 Elongation factor Tu domain 2 227 295 1.0E-17 T 13-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 CDG55_13700 d51d3a1bbc035385a0f4abd34116ea33 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 59.364 T 13-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDG55_09635 255ea09e7fd74bb34e0219b062983644 302 Gene3D G3DSA:3.30.2350.10 83 299 9.3E-48 T 13-10-2018 CDG55_09635 255ea09e7fd74bb34e0219b062983644 302 Pfam PF00849 RNA pseudouridylate synthase 100 247 3.2E-24 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_09635 255ea09e7fd74bb34e0219b062983644 302 SUPERFAMILY SSF55120 86 297 3.68E-50 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_13080 fcbf2525455d7a92ccf4bb2dc778928b 214 SUPERFAMILY SSF53335 5 154 5.75E-9 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_13080 fcbf2525455d7a92ccf4bb2dc778928b 214 Pfam PF02390 Putative methyltransferase 23 156 8.8E-16 T 13-10-2018 CDG55_13080 fcbf2525455d7a92ccf4bb2dc778928b 214 Gene3D G3DSA:3.40.50.150 2 195 3.4E-23 T 13-10-2018 CDG55_13805 d0493e152953d8adac4975bf528e46a8 240 Pfam PF01895 PhoU domain 132 215 8.4E-16 T 13-10-2018 IPR026022 PhoU domain CDG55_13805 d0493e152953d8adac4975bf528e46a8 240 Pfam PF01895 PhoU domain 29 114 1.2E-16 T 13-10-2018 IPR026022 PhoU domain CDG55_13805 d0493e152953d8adac4975bf528e46a8 240 SUPERFAMILY SSF109755 14 236 4.92E-65 T 13-10-2018 CDG55_13805 d0493e152953d8adac4975bf528e46a8 240 Gene3D G3DSA:1.20.58.220 122 235 1.4E-32 T 13-10-2018 IPR038078 PhoU-like domain superfamily CDG55_13805 d0493e152953d8adac4975bf528e46a8 240 Gene3D G3DSA:1.20.58.220 4 121 9.5E-39 T 13-10-2018 IPR038078 PhoU-like domain superfamily CDG55_13805 d0493e152953d8adac4975bf528e46a8 240 PIRSF PIRSF003107 9 230 4.7E-64 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CDG55_13805 d0493e152953d8adac4975bf528e46a8 240 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 14 224 2.5E-64 T 13-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 CDG55_02440 08a38430f30be54caa78313c239d6464 469 Gene3D G3DSA:3.40.1190.10 94 322 6.8E-87 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_02440 08a38430f30be54caa78313c239d6464 469 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 401 5.2E-13 T 13-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 CDG55_02440 08a38430f30be54caa78313c239d6464 469 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 42 464 2.8E-126 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_02440 08a38430f30be54caa78313c239d6464 469 Pfam PF08245 Mur ligase middle domain 120 303 2.0E-44 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CDG55_02440 08a38430f30be54caa78313c239d6464 469 SUPERFAMILY SSF63418 14 109 7.32E-22 T 13-10-2018 IPR035911 MurE/MurF, N-terminal CDG55_02440 08a38430f30be54caa78313c239d6464 469 SUPERFAMILY SSF53623 114 323 6.28E-55 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_02440 08a38430f30be54caa78313c239d6464 469 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 14 466 30.633 T 13-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 CDG55_02440 08a38430f30be54caa78313c239d6464 469 SUPERFAMILY SSF53244 325 464 3.43E-25 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_02440 08a38430f30be54caa78313c239d6464 469 Pfam PF01225 Mur ligase family, catalytic domain 36 105 1.2E-7 T 13-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 CDG55_02440 08a38430f30be54caa78313c239d6464 469 Gene3D G3DSA:3.40.1390.10 1 93 1.8E-36 T 13-10-2018 CDG55_02440 08a38430f30be54caa78313c239d6464 469 Gene3D G3DSA:3.90.190.20 323 469 7.0E-40 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_12005 6e8276562318090142a51bbbfa1d6692 456 Gene3D G3DSA:3.30.160.390 6 93 3.3E-27 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CDG55_12005 6e8276562318090142a51bbbfa1d6692 456 Pfam PF13356 Arm DNA-binding domain 8 90 3.7E-15 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CDG55_12005 6e8276562318090142a51bbbfa1d6692 456 Gene3D G3DSA:1.10.443.10 217 401 8.3E-13 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_12005 6e8276562318090142a51bbbfa1d6692 456 SUPERFAMILY SSF56349 103 401 4.71E-48 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_12005 6e8276562318090142a51bbbfa1d6692 456 Gene3D G3DSA:1.10.150.130 94 212 7.8E-27 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_12005 6e8276562318090142a51bbbfa1d6692 456 Pfam PF00589 Phage integrase family 235 392 2.8E-12 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Pfam PF01043 SecA preprotein cross-linking domain 235 361 3.8E-33 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 819 0.0 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Pfam PF07516 SecA Wing and Scaffold domain 621 833 2.0E-65 T 13-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 SUPERFAMILY SSF81767 227 371 1.96E-36 T 13-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Gene3D G3DSA:3.90.1440.10 229 371 5.7E-166 T 13-10-2018 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 836 19.586 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 SMART SM00957 6 405 4.2E-282 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Gene3D G3DSA:3.40.50.300 420 624 2.6E-83 T 13-10-2018 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 SMART SM00958 228 361 1.5E-64 T 13-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Pfam PF02810 SEC-C motif 892 910 6.5E-10 T 13-10-2018 IPR004027 SEC-C motif CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 SUPERFAMILY SSF81886 624 900 3.27E-78 T 13-10-2018 IPR036266 SecA, Wing/Scaffold superfamily CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Pfam PF07517 SecA DEAD-like domain 8 405 3.4E-128 T 13-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Gene3D G3DSA:1.10.3060.10 625 836 2.7E-72 T 13-10-2018 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 PRINTS PR00906 SecA protein signature 117 127 5.1E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 PRINTS PR00906 SecA protein signature 170 190 5.1E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 PRINTS PR00906 SecA protein signature 379 396 5.1E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 PRINTS PR00906 SecA protein signature 63 87 5.1E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 PRINTS PR00906 SecA protein signature 416 429 5.1E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 PRINTS PR00906 SecA protein signature 101 115 5.1E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 PRINTS PR00906 SecA protein signature 342 364 5.1E-70 T 13-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 SUPERFAMILY SSF52540 6 418 3.15E-80 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 SUPERFAMILY SSF52540 419 622 9.31E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_11710 9fe77561009bf21d520e8f0d41d7f8db 911 Gene3D G3DSA:3.40.50.300 22 418 5.7E-166 T 13-10-2018 CDG55_04395 9817bafac9a507993ab73bccc6196699 237 SMART SM00357 4 66 2.3E-8 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CDG55_04395 9817bafac9a507993ab73bccc6196699 237 SUPERFAMILY SSF54523 105 221 5.41E-5 T 13-10-2018 CDG55_04395 9817bafac9a507993ab73bccc6196699 237 SUPERFAMILY SSF50249 2 66 1.54E-12 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_04395 9817bafac9a507993ab73bccc6196699 237 Pfam PF05901 Excalibur calcium-binding domain 199 232 2.1E-7 T 13-10-2018 IPR008613 Excalibur calcium-binding domain CDG55_04395 9817bafac9a507993ab73bccc6196699 237 Pfam PF00313 'Cold-shock' DNA-binding domain 4 65 9.3E-11 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_04395 9817bafac9a507993ab73bccc6196699 237 Gene3D G3DSA:2.40.50.140 1 72 3.4E-16 T 13-10-2018 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 Gene3D G3DSA:2.30.42.20 460 639 2.5E-53 T 13-10-2018 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 Pfam PF08676 MutL C terminal dimerisation domain 454 602 1.7E-44 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 Gene3D G3DSA:3.30.1370.100 502 597 2.5E-53 T 13-10-2018 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 8 317 1.5E-96 T 13-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 SUPERFAMILY SSF54211 198 337 1.02E-33 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 SMART SM00853 458 602 6.5E-46 T 13-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 7 642 26.832 T 13-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 220 336 3.2E-36 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 148 5.5E-13 T 13-10-2018 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 Gene3D G3DSA:3.30.230.10 224 335 3.1E-36 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 SUPERFAMILY SSF55874 8 209 3.89E-50 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 Gene3D G3DSA:3.30.565.10 8 223 7.8E-66 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 SMART SM01340 219 337 9.0E-52 T 13-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 CDG55_09620 25b704b38e7193b8f93487ce8c9baed5 646 SUPERFAMILY SSF118116 453 644 5.75E-57 T 13-10-2018 IPR037198 MutL, C-terminal domain superfamily CDG55_10200 ae55a45fdb12deec97b7f2f3ac2ac681 215 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 32 91 2.7E-11 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDG55_10200 ae55a45fdb12deec97b7f2f3ac2ac681 215 Pfam PF01467 Cytidylyltransferase-like 32 87 2.8E-8 T 13-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 CDG55_10200 ae55a45fdb12deec97b7f2f3ac2ac681 215 Gene3D G3DSA:3.40.50.620 25 210 2.8E-55 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10200 ae55a45fdb12deec97b7f2f3ac2ac681 215 SUPERFAMILY SSF52374 32 193 8.3E-23 T 13-10-2018 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 Gene3D G3DSA:3.30.860.10 1 91 2.6E-39 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.2E-22 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.2E-22 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.2E-22 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.674 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 SUPERFAMILY SSF54570 3 84 4.32E-34 T 13-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 2.4E-43 T 13-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 Pfam PF00203 Ribosomal protein S19 3 83 4.1E-35 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03130 7cb3f75181a5b476105095bd09278dd3 91 PIRSF PIRSF002144 1 91 3.7E-31 T 13-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_02970 4f4e98a4729d410e6bee4cc95533b5c3 200 SUPERFAMILY SSF142695 3 174 6.67E-61 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CDG55_02970 4f4e98a4729d410e6bee4cc95533b5c3 200 Gene3D G3DSA:3.40.50.10990 2 175 4.2E-70 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CDG55_02970 4f4e98a4729d410e6bee4cc95533b5c3 200 Pfam PF00925 GTP cyclohydrolase II 8 171 9.9E-65 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CDG55_02970 4f4e98a4729d410e6bee4cc95533b5c3 200 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 6.3E-76 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CDG55_02970 4f4e98a4729d410e6bee4cc95533b5c3 200 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 197 43.743 T 13-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CDG55_01505 e98cb376a556ef9a2af4d813a710b994 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 17 152 1.6E-53 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_01505 e98cb376a556ef9a2af4d813a710b994 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 17 153 2.1E-55 T 13-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_01505 e98cb376a556ef9a2af4d813a710b994 156 Gene3D G3DSA:3.40.50.960 3 156 2.0E-58 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_01505 e98cb376a556ef9a2af4d813a710b994 156 SUPERFAMILY SSF52121 11 156 1.44E-58 T 13-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_01505 e98cb376a556ef9a2af4d813a710b994 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 11 156 30.862 T 13-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_00105 60ca76cabe827e3f93fe12257f099f10 114 Pfam PF00893 Small Multidrug Resistance protein 7 98 8.3E-26 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CDG55_00105 60ca76cabe827e3f93fe12257f099f10 114 Gene3D G3DSA:1.10.3730.20 5 114 1.6E-35 T 13-10-2018 CDG55_00105 60ca76cabe827e3f93fe12257f099f10 114 SUPERFAMILY SSF103481 11 110 6.8E-19 T 13-10-2018 CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 SMART SM00316 640 711 5.6E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Pfam PF09371 Tex-like protein N-terminal domain 8 188 4.2E-55 T 13-10-2018 IPR018974 Tex-like protein, N-terminal CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Gene3D G3DSA:1.10.150.310 490 621 5.5E-49 T 13-10-2018 CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Pfam PF16921 Tex protein YqgF-like domain 317 442 2.1E-49 T 13-10-2018 IPR032639 Tex protein, YqgF-like domain CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 SUPERFAMILY SSF158832 1 311 3.92E-89 T 13-10-2018 CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Gene3D G3DSA:1.10.10.650 1 108 3.4E-36 T 13-10-2018 IPR023319 Tex-like protein, HTH domain superfamily CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 SUPERFAMILY SSF53098 312 460 1.59E-47 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 SUPERFAMILY SSF50249 628 715 8.58E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 SUPERFAMILY SSF47781 552 623 2.67E-19 T 13-10-2018 IPR010994 RuvA domain 2-like CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Gene3D G3DSA:1.10.3500.10 112 489 1.3E-134 T 13-10-2018 IPR023323 Tex-like domain superfamily CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Gene3D G3DSA:2.40.50.140 622 714 2.8E-29 T 13-10-2018 CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Pfam PF12836 Helix-hairpin-helix motif 482 546 7.1E-26 T 13-10-2018 CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Gene3D G3DSA:3.30.420.140 315 442 1.3E-134 T 13-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 SUPERFAMILY SSF47781 461 549 1.56E-26 T 13-10-2018 IPR010994 RuvA domain 2-like CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 SMART SM00732 316 415 1.2E-29 T 13-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 CDG55_02305 8c8e778486fb117a532fb877886c51e9 785 Pfam PF00575 S1 RNA binding domain 640 711 3.6E-21 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_09030 cbeab1de7b41b3b5cd17670718b143e2 103 Gene3D G3DSA:3.30.1420.10 1 29 7.7E-7 T 13-10-2018 CDG55_09030 cbeab1de7b41b3b5cd17670718b143e2 103 Pfam PF04358 DsrC like protein 2 103 4.9E-28 T 13-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE CDG55_09030 cbeab1de7b41b3b5cd17670718b143e2 103 SUPERFAMILY SSF69721 2 103 4.84E-29 T 13-10-2018 IPR025526 DsrC-like domain superfamily CDG55_09030 cbeab1de7b41b3b5cd17670718b143e2 103 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 103 8.4E-26 T 13-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE CDG55_09030 cbeab1de7b41b3b5cd17670718b143e2 103 PIRSF PIRSF006223 1 103 4.3E-21 T 13-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE CDG55_09030 cbeab1de7b41b3b5cd17670718b143e2 103 Gene3D G3DSA:1.10.10.370 33 103 3.7E-19 T 13-10-2018 CDG55_01140 59ad8d6e466a02707a020a57eb5962a5 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 16 29 5.7E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01140 59ad8d6e466a02707a020a57eb5962a5 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 40 60 5.7E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01140 59ad8d6e466a02707a020a57eb5962a5 121 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 5 16 5.7E-15 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01140 59ad8d6e466a02707a020a57eb5962a5 121 TIGRFAM TIGR02054 MerD: mercuric resistence transcriptional repressor protein MerD 1 119 2.8E-62 T 13-10-2018 IPR011797 Mercuric resistence transcriptional repressor protein MerD GO:0003677|GO:0045892|GO:0046689 CDG55_01140 59ad8d6e466a02707a020a57eb5962a5 121 SMART SM00422 4 73 7.5E-20 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_01140 59ad8d6e466a02707a020a57eb5962a5 121 Gene3D G3DSA:1.10.1660.10 1 121 1.4E-15 T 13-10-2018 CDG55_01140 59ad8d6e466a02707a020a57eb5962a5 121 SUPERFAMILY SSF46955 4 108 5.49E-16 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_01140 59ad8d6e466a02707a020a57eb5962a5 121 Pfam PF13411 MerR HTH family regulatory protein 4 72 1.2E-11 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_08905 0a98247199769198af14b1cf27294190 166 SMART SM00935 9 163 1.3E-33 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 CDG55_08905 0a98247199769198af14b1cf27294190 166 SUPERFAMILY SSF111384 21 163 7.59E-25 T 13-10-2018 CDG55_08905 0a98247199769198af14b1cf27294190 166 Pfam PF03938 Outer membrane protein (OmpH-like) 7 161 1.5E-22 T 13-10-2018 IPR005632 Chaperone protein Skp GO:0051082 CDG55_08905 0a98247199769198af14b1cf27294190 166 Gene3D G3DSA:3.30.910.20 12 166 4.5E-26 T 13-10-2018 IPR024930 Skp domain superfamily CDG55_09380 44f6286372699bea50b6ddfc1daeec3d 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 45 1.0E-9 T 13-10-2018 CDG55_09380 44f6286372699bea50b6ddfc1daeec3d 156 SUPERFAMILY SSF46785 2 62 1.46E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_09380 44f6286372699bea50b6ddfc1daeec3d 156 Pfam PF01037 Lrp/AsnC ligand binding domain 69 143 3.9E-18 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDG55_09380 44f6286372699bea50b6ddfc1daeec3d 156 Gene3D G3DSA:3.30.70.920 56 140 6.7E-20 T 13-10-2018 CDG55_09380 44f6286372699bea50b6ddfc1daeec3d 156 SUPERFAMILY SSF54909 68 144 1.61E-14 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_09380 44f6286372699bea50b6ddfc1daeec3d 156 SMART SM00344 3 112 5.3E-23 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDG55_09380 44f6286372699bea50b6ddfc1daeec3d 156 Gene3D G3DSA:1.10.10.10 1 55 1.8E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_01375 7a15a07bd446f24568a8f93679c0589c 300 Gene3D G3DSA:3.40.190.10 164 263 5.5E-59 T 13-10-2018 CDG55_01375 7a15a07bd446f24568a8f93679c0589c 300 Gene3D G3DSA:3.40.190.10 92 290 5.5E-59 T 13-10-2018 CDG55_01375 7a15a07bd446f24568a8f93679c0589c 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.4E-17 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_01375 7a15a07bd446f24568a8f93679c0589c 300 Gene3D G3DSA:1.10.10.10 1 87 6.3E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_01375 7a15a07bd446f24568a8f93679c0589c 300 SUPERFAMILY SSF46785 6 88 5.97E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_01375 7a15a07bd446f24568a8f93679c0589c 300 Pfam PF03466 LysR substrate binding domain 89 292 1.4E-39 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_01375 7a15a07bd446f24568a8f93679c0589c 300 SUPERFAMILY SSF53850 90 293 5.43E-39 T 13-10-2018 CDG55_03650 9f5fff25bb76ff97ceb05c6293b70636 418 Gene3D G3DSA:3.40.50.1950 4 194 1.8E-58 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CDG55_03650 9f5fff25bb76ff97ceb05c6293b70636 418 SUPERFAMILY SSF52507 7 185 8.24E-62 T 13-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 CDG55_03650 9f5fff25bb76ff97ceb05c6293b70636 418 Gene3D G3DSA:3.40.50.10300 197 417 2.8E-77 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CDG55_03650 9f5fff25bb76ff97ceb05c6293b70636 418 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 10 410 1.4E-144 T 13-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 CDG55_03650 9f5fff25bb76ff97ceb05c6293b70636 418 Pfam PF02441 Flavoprotein 11 182 9.3E-47 T 13-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 CDG55_03650 9f5fff25bb76ff97ceb05c6293b70636 418 SUPERFAMILY SSF102645 198 413 8.89E-73 T 13-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CDG55_03650 9f5fff25bb76ff97ceb05c6293b70636 418 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 199 382 4.3E-71 T 13-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 CDG55_08785 7c4472dca9295d4c2508459a6489dda0 199 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 188 1.1E-42 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CDG55_08785 7c4472dca9295d4c2508459a6489dda0 199 PIRSF PIRSF000709 1 193 2.5E-9 T 13-10-2018 CDG55_08785 7c4472dca9295d4c2508459a6489dda0 199 Gene3D G3DSA:3.40.50.1240 2 197 5.3E-42 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CDG55_08785 7c4472dca9295d4c2508459a6489dda0 199 SMART SM00855 2 159 2.3E-11 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CDG55_08785 7c4472dca9295d4c2508459a6489dda0 199 SUPERFAMILY SSF53254 2 188 5.35E-45 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CDG55_04160 3cdbf7975aa081ad094d21dcd592e4c5 269 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 2 266 26.708 T 13-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 CDG55_04160 3cdbf7975aa081ad094d21dcd592e4c5 269 Gene3D G3DSA:3.40.50.150 69 269 2.2E-59 T 13-10-2018 CDG55_04160 3cdbf7975aa081ad094d21dcd592e4c5 269 SUPERFAMILY SSF53335 33 265 2.23E-51 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_04160 3cdbf7975aa081ad094d21dcd592e4c5 269 Pfam PF04445 Putative SAM-dependent methyltransferase 44 264 1.1E-48 T 13-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 CDG55_07980 77fc2d108df0e9f0808639dd38129771 261 Gene3D G3DSA:3.20.20.70 1 259 1.6E-117 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_07980 77fc2d108df0e9f0808639dd38129771 261 SUPERFAMILY SSF110399 5 246 2.09E-87 T 13-10-2018 CDG55_07980 77fc2d108df0e9f0808639dd38129771 261 Pfam PF05690 Thiazole biosynthesis protein ThiG 8 254 2.2E-107 T 13-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CDG55_07980 77fc2d108df0e9f0808639dd38129771 261 Hamap MF_00443 Thiazole synthase [thiG]. 5 260 41.557 T 13-10-2018 IPR008867 Thiazole synthase GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 CDG55_12390 06dcc7fbb36891ad05f3fb1b0d58f4de 174 SUPERFAMILY SSF55068 1 163 1.29E-72 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_12390 06dcc7fbb36891ad05f3fb1b0d58f4de 174 Pfam PF01625 Peptide methionine sulfoxide reductase 3 153 4.9E-63 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_12390 06dcc7fbb36891ad05f3fb1b0d58f4de 174 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 3 152 7.8E-60 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_12390 06dcc7fbb36891ad05f3fb1b0d58f4de 174 Gene3D G3DSA:3.30.1060.10 1 160 6.1E-70 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_12390 06dcc7fbb36891ad05f3fb1b0d58f4de 174 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 1 157 36.555 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_11480 8b8981597e66c6a2db21c59ad91257d4 695 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 476 660 1.9E-41 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CDG55_11480 8b8981597e66c6a2db21c59ad91257d4 695 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 445 474 2.3E-7 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CDG55_11480 8b8981597e66c6a2db21c59ad91257d4 695 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 558 587 2.3E-7 T 13-10-2018 IPR004090 Chemotaxis methyl-accepting receptor GO:0004888|GO:0006935|GO:0007165|GO:0016020 CDG55_11480 8b8981597e66c6a2db21c59ad91257d4 695 SUPERFAMILY SSF58104 391 693 1.4E-70 T 13-10-2018 CDG55_11480 8b8981597e66c6a2db21c59ad91257d4 695 SMART SM00283 431 692 4.7E-89 T 13-10-2018 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0007165|GO:0016020 CDG55_11480 8b8981597e66c6a2db21c59ad91257d4 695 Gene3D G3DSA:1.10.287.950 368 694 9.5E-65 T 13-10-2018 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 Gene3D G3DSA:3.30.360.10 139 350 2.6E-79 T 13-10-2018 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 Gene3D G3DSA:3.40.50.720 1 138 1.1E-58 T 13-10-2018 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 1 367 5.2E-192 T 13-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 SMART SM00859 2 122 1.0E-25 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 121 1.5E-22 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 SUPERFAMILY SSF51735 1 147 9.85E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 SUPERFAMILY SSF55347 134 354 3.12E-75 T 13-10-2018 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 353 2.9E-54 T 13-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 33.012 T 13-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 CDG55_12835 c0e986062bf22865d8258b8a05ccf97c 372 PIRSF PIRSF000148 1 371 4.0E-67 T 13-10-2018 CDG55_02625 fca6dac419d4cbfbdec32b6f088831cd 369 Gene3D G3DSA:3.40.50.2000 22 191 3.0E-15 T 13-10-2018 CDG55_02625 fca6dac419d4cbfbdec32b6f088831cd 369 Pfam PF13692 Glycosyl transferases group 1 204 341 2.3E-14 T 13-10-2018 CDG55_02625 fca6dac419d4cbfbdec32b6f088831cd 369 Gene3D G3DSA:3.40.50.2000 192 351 8.0E-23 T 13-10-2018 CDG55_02625 fca6dac419d4cbfbdec32b6f088831cd 369 Pfam PF13439 Glycosyltransferase Family 4 25 183 5.0E-14 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDG55_02625 fca6dac419d4cbfbdec32b6f088831cd 369 SUPERFAMILY SSF53756 24 346 6.28E-46 T 13-10-2018 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 Pfam PF01330 RuvA N terminal domain 1 61 3.7E-20 T 13-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 Gene3D G3DSA:1.10.150.20 66 140 5.0E-25 T 13-10-2018 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 199 29.809 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 SUPERFAMILY SSF50249 1 62 1.09E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 Pfam PF14520 Helix-hairpin-helix domain 71 129 2.3E-18 T 13-10-2018 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 SUPERFAMILY SSF47781 65 136 8.15E-22 T 13-10-2018 IPR010994 RuvA domain 2-like CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 SMART SM00278 72 91 0.52 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 SMART SM00278 107 126 0.087 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 SUPERFAMILY SSF46929 153 198 1.44E-8 T 13-10-2018 IPR036267 RuvA, C-terminal domain superfamily CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 Gene3D G3DSA:2.40.50.140 1 65 1.3E-23 T 13-10-2018 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 198 2.5E-55 T 13-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 Pfam PF07499 RuvA, C-terminal domain 155 198 1.4E-11 T 13-10-2018 IPR011114 Holliday junction DNA helicase RuvA, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 CDG55_10235 31dfb3b5ca732af8d480054e72c52f76 200 Gene3D G3DSA:1.10.8.10 152 198 1.3E-12 T 13-10-2018 CDG55_07645 07611b9a1208de2074ac6b87ed076e41 412 Pfam PF03583 Secretory lipase 120 231 1.1E-8 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 CDG55_07645 07611b9a1208de2074ac6b87ed076e41 412 PIRSF PIRSF029171 1 412 1.1E-90 T 13-10-2018 IPR005152 Lipase, secreted GO:0004806|GO:0016042 CDG55_07645 07611b9a1208de2074ac6b87ed076e41 412 Gene3D G3DSA:3.40.50.1820 49 262 6.7E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_07645 07611b9a1208de2074ac6b87ed076e41 412 SUPERFAMILY SSF53474 79 399 1.45E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_07645 07611b9a1208de2074ac6b87ed076e41 412 Gene3D G3DSA:3.40.50.1820 333 409 1.9E-7 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_04190 475a905d28450640a4bdce9e487945ca 646 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 25 621 5.1E-185 T 13-10-2018 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 CDG55_04190 475a905d28450640a4bdce9e487945ca 646 Gene3D G3DSA:2.60.40.420 153 359 1.1E-38 T 13-10-2018 IPR008972 Cupredoxin CDG55_04190 475a905d28450640a4bdce9e487945ca 646 SUPERFAMILY SSF49503 15 149 5.52E-34 T 13-10-2018 IPR008972 Cupredoxin CDG55_04190 475a905d28450640a4bdce9e487945ca 646 SUPERFAMILY SSF49503 156 364 4.69E-40 T 13-10-2018 IPR008972 Cupredoxin CDG55_04190 475a905d28450640a4bdce9e487945ca 646 Pfam PF07731 Multicopper oxidase 510 623 8.8E-26 T 13-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 CDG55_04190 475a905d28450640a4bdce9e487945ca 646 Gene3D G3DSA:2.60.40.420 17 144 1.1E-36 T 13-10-2018 IPR008972 Cupredoxin CDG55_04190 475a905d28450640a4bdce9e487945ca 646 SUPERFAMILY SSF49503 466 621 5.52E-33 T 13-10-2018 IPR008972 Cupredoxin CDG55_04190 475a905d28450640a4bdce9e487945ca 646 Pfam PF07732 Multicopper oxidase 33 145 8.2E-35 T 13-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 CDG55_04190 475a905d28450640a4bdce9e487945ca 646 Pfam PF00394 Multicopper oxidase 159 318 8.8E-27 T 13-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 CDG55_07415 8215fe9ec26d8b282ea8e214ff05d1dc 365 SUPERFAMILY SSF109998 274 321 1.02E-5 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CDG55_07415 8215fe9ec26d8b282ea8e214ff05d1dc 365 Pfam PF12833 Helix-turn-helix domain 279 356 1.4E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_07415 8215fe9ec26d8b282ea8e214ff05d1dc 365 Gene3D G3DSA:1.10.10.60 252 360 2.5E-23 T 13-10-2018 CDG55_07415 8215fe9ec26d8b282ea8e214ff05d1dc 365 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 49 228 1.3E-34 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_07415 8215fe9ec26d8b282ea8e214ff05d1dc 365 SUPERFAMILY SSF46689 308 358 2.37E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_07415 8215fe9ec26d8b282ea8e214ff05d1dc 365 SMART SM00342 272 355 5.5E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_10590 c1bdc442f0fb9b1d190e45953d29e7b7 509 Gene3D G3DSA:3.40.50.620 5 229 1.4E-119 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10590 c1bdc442f0fb9b1d190e45953d29e7b7 509 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 5 227 7.9E-74 T 13-10-2018 IPR007357 Deoxyribodipyrimidine photolyase-related protein CDG55_10590 c1bdc442f0fb9b1d190e45953d29e7b7 509 SUPERFAMILY SSF48173 230 495 4.32E-61 T 13-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 CDG55_10590 c1bdc442f0fb9b1d190e45953d29e7b7 509 Gene3D G3DSA:1.10.579.10 322 442 1.7E-52 T 13-10-2018 CDG55_10590 c1bdc442f0fb9b1d190e45953d29e7b7 509 Gene3D G3DSA:1.10.10.1710 443 509 6.6E-26 T 13-10-2018 CDG55_10590 c1bdc442f0fb9b1d190e45953d29e7b7 509 Gene3D G3DSA:1.25.40.80 132 318 1.4E-119 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 SMART SM00382 92 247 3.3E-7 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 Pfam PF13541 Subunit ChlI of Mg-chelatase 347 431 5.6E-7 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 SUPERFAMILY SSF52540 71 289 4.47E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 Gene3D G3DSA:3.30.230.10 314 459 1.1E-18 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 Pfam PF13481 AAA domain 83 224 1.2E-11 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 PRINTS PR01874 DNA repair protein radA signature 10 34 3.6E-92 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 PRINTS PR01874 DNA repair protein radA signature 176 200 3.6E-92 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 PRINTS PR01874 DNA repair protein radA signature 250 276 3.6E-92 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 PRINTS PR01874 DNA repair protein radA signature 126 143 3.6E-92 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 PRINTS PR01874 DNA repair protein radA signature 84 112 3.6E-92 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 PRINTS PR01874 DNA repair protein radA signature 323 346 3.6E-92 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 PRINTS PR01874 DNA repair protein radA signature 215 243 3.6E-92 T 13-10-2018 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 Hamap MF_01498 DNA repair protein RadA [radA]. 21 456 42.952 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 452 1.3E-193 T 13-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 SUPERFAMILY SSF54211 257 455 6.07E-39 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_10490 0fef072277eede98f8d3ae8b03677ee7 463 Gene3D G3DSA:3.40.50.300 68 286 1.9E-40 T 13-10-2018 CDG55_00595 7c6526b1acb5b41539c00276effb40d8 403 Pfam PF01420 Type I restriction modification DNA specificity domain 200 351 4.7E-14 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 CDG55_00595 7c6526b1acb5b41539c00276effb40d8 403 Pfam PF01420 Type I restriction modification DNA specificity domain 1 183 1.2E-21 T 13-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 CDG55_00595 7c6526b1acb5b41539c00276effb40d8 403 SUPERFAMILY SSF116734 197 396 1.14E-38 T 13-10-2018 CDG55_00595 7c6526b1acb5b41539c00276effb40d8 403 SUPERFAMILY SSF116734 3 195 4.91E-45 T 13-10-2018 CDG55_00595 7c6526b1acb5b41539c00276effb40d8 403 Gene3D G3DSA:3.90.220.20 196 393 8.2E-39 T 13-10-2018 CDG55_00595 7c6526b1acb5b41539c00276effb40d8 403 Gene3D G3DSA:3.90.220.20 2 195 3.4E-42 T 13-10-2018 CDG55_00550 fc76ab59158bf4654908e84fea8fb3fe 95 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 7 88 3.9E-27 T 13-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system CDG55_00550 fc76ab59158bf4654908e84fea8fb3fe 95 Gene3D G3DSA:3.10.450.530 1 90 1.6E-18 T 13-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily CDG55_04320 b238f06dc5396f06705d8daf2ff5f03c 183 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 23 120 8.9E-26 T 13-10-2018 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04320 b238f06dc5396f06705d8daf2ff5f03c 183 Gene3D G3DSA:1.20.58.1610 2 121 3.8E-31 T 13-10-2018 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04320 b238f06dc5396f06705d8daf2ff5f03c 183 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 4 121 17.819 T 13-10-2018 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 Pfam PF03466 LysR substrate binding domain 92 293 1.3E-52 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 SUPERFAMILY SSF46785 1 111 2.39E-19 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 Gene3D G3DSA:1.10.10.10 1 86 5.9E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 Gene3D G3DSA:3.40.190.290 92 294 2.9E-44 T 13-10-2018 CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.4E-18 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 SUPERFAMILY SSF53850 93 293 1.3E-47 T 13-10-2018 CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 2.6E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 2.6E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_04400 907967a643cc57a1f978fbcd07af40b3 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 2.6E-5 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_10350 1bf52efcccf8140147b7b11a98a5c8dd 264 SUPERFAMILY SSF53474 2 260 7.54E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_10350 1bf52efcccf8140147b7b11a98a5c8dd 264 Pfam PF12697 Alpha/beta hydrolase family 44 256 1.2E-12 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_10350 1bf52efcccf8140147b7b11a98a5c8dd 264 Gene3D G3DSA:3.40.50.1820 1 264 2.1E-44 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_00995 9f60796c6974ee1423e32f01a31957df 90 Gene3D G3DSA:1.10.260.40 2 90 5.6E-21 T 13-10-2018 CDG55_00995 9f60796c6974ee1423e32f01a31957df 90 Pfam PF01381 Helix-turn-helix 37 75 1.1E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_00995 9f60796c6974ee1423e32f01a31957df 90 SMART SM00530 36 90 1.1E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_00995 9f60796c6974ee1423e32f01a31957df 90 SUPERFAMILY SSF47413 37 80 1.26E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_03890 b162e63f99dc5ad160ab31c485e64f6e 417 Pfam PF05977 Transmembrane secretion effector 7 397 1.8E-27 T 13-10-2018 IPR010290 Transmembrane secretion effector CDG55_03890 b162e63f99dc5ad160ab31c485e64f6e 417 Gene3D G3DSA:1.20.1250.20 9 403 5.6E-25 T 13-10-2018 CDG55_03890 b162e63f99dc5ad160ab31c485e64f6e 417 SUPERFAMILY SSF103473 13 402 3.14E-31 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_13090 6c9a6a4e3f385ff7990febbe04cbaab8 214 Pfam PF00753 Metallo-beta-lactamase superfamily 11 193 4.6E-29 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_13090 6c9a6a4e3f385ff7990febbe04cbaab8 214 Gene3D G3DSA:3.60.15.10 2 211 1.0E-75 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_13090 6c9a6a4e3f385ff7990febbe04cbaab8 214 SUPERFAMILY SSF56281 3 209 4.72E-55 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_13090 6c9a6a4e3f385ff7990febbe04cbaab8 214 SMART SM00849 13 193 1.3E-40 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_02205 964dc5a4e5fedb5ddf252c5301f284e8 335 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 41 193 1.5E-26 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_02205 964dc5a4e5fedb5ddf252c5301f284e8 335 Gene3D G3DSA:1.10.10.60 224 332 7.6E-24 T 13-10-2018 CDG55_02205 964dc5a4e5fedb5ddf252c5301f284e8 335 SUPERFAMILY SSF46689 280 330 4.93E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_02205 964dc5a4e5fedb5ddf252c5301f284e8 335 Pfam PF12833 Helix-turn-helix domain 251 328 1.1E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_02205 964dc5a4e5fedb5ddf252c5301f284e8 335 SMART SM00342 245 327 1.9E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 752 812 2.5E-30 T 13-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 SUPERFAMILY SSF55874 19 231 4.58E-73 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Pfam PF01751 Toprim domain 432 544 2.8E-17 T 13-10-2018 IPR006171 TOPRIM domain CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 16 822 100.643 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 SUPERFAMILY SSF54211 234 405 2.47E-59 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Gene3D G3DSA:3.30.230.10 233 411 9.2E-72 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 SMART SM00433 49 816 1.0E-264 T 13-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 538 550 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 518 535 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 433 447 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 500 516 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 755 771 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 49 64 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 84 97 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 281 294 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR00418 DNA topoisomerase II family signature 127 141 1.3E-71 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Pfam PF00204 DNA gyrase B 234 403 9.3E-61 T 13-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Gene3D G3DSA:3.40.50.670 412 588 1.0E-72 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 194 209 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 776 788 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 325 341 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 19 29 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 483 492 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 233 255 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 792 808 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 209 222 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 387 407 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 PRINTS PR01159 DNA gyrase subunit B signature 373 387 8.4E-72 T 13-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 SUPERFAMILY SSF56719 407 817 3.4E-87 T 13-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Gene3D G3DSA:3.10.20.690 605 702 3.2E-5 T 13-10-2018 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 19 818 1.8E-300 T 13-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Gene3D G3DSA:3.40.50.670 717 821 1.1E-26 T 13-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Gene3D G3DSA:3.30.565.10 15 232 1.2E-90 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 SMART SM00387 45 189 4.3E-31 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_01190 1055a98227904c77e0ed61e428863b9b 822 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 46 186 3.7E-23 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 SUPERFAMILY SSF52413 284 388 4.32E-25 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 SUPERFAMILY SSF51735 4 195 3.06E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 PIRSF PIRSF500134 2 384 9.1E-117 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 SMART SM00984 301 388 1.0E-13 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 193 282 1.3E-25 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 3 379 8.0E-107 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 Gene3D G3DSA:3.40.50.720 2 194 1.3E-59 T 13-10-2018 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 172 5.6E-35 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 PIRSF PIRSF000124 2 389 9.8E-134 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 Gene3D G3DSA:1.20.5.100 195 221 2.3E-19 T 13-10-2018 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 SUPERFAMILY SSF48179 192 288 1.63E-29 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 Gene3D G3DSA:3.40.50.720 224 389 2.3E-61 T 13-10-2018 CDG55_14785 d89c36c21f601c345c6a8c81c7cdaaa8 389 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 302 376 1.8E-10 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 PRINTS PR01806 Virulence factor MviN signature 416 433 4.4E-69 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 PRINTS PR01806 Virulence factor MviN signature 157 178 4.4E-69 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 PRINTS PR01806 Virulence factor MviN signature 52 68 4.4E-69 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 PRINTS PR01806 Virulence factor MviN signature 133 157 4.4E-69 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 PRINTS PR01806 Virulence factor MviN signature 357 376 4.4E-69 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 PRINTS PR01806 Virulence factor MviN signature 33 52 4.4E-69 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 PRINTS PR01806 Virulence factor MviN signature 259 285 4.4E-69 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 Pfam PF03023 MviN-like protein 30 474 6.1E-131 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 PIRSF PIRSF002869 1 512 2.1E-155 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 3 474 19.684 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_14830 a31012f4a84a463a817e212b1d2aad75 513 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 3 505 5.7E-134 T 13-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Pfam PF02310 B12 binding domain 749 842 3.3E-18 T 13-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 940 1209 2.6E-113 T 13-10-2018 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 SUPERFAMILY SSF52242 743 895 1.02E-44 T 13-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 SUPERFAMILY SSF47644 653 740 7.19E-28 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 TIGRFAM TIGR02082 metH: methionine synthase 12 1193 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 SMART SM01018 658 741 8.6E-43 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Gene3D G3DSA:1.10.1240.10 650 738 6.8E-40 T 13-10-2018 IPR036594 Methionine synthase domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Gene3D G3DSA:3.20.20.20 338 645 8.7E-132 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 SUPERFAMILY SSF56507 913 1224 3.27E-115 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 SUPERFAMILY SSF51717 353 621 1.3E-89 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Gene3D G3DSA:3.10.196.10 915 1223 3.1E-125 T 13-10-2018 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Pfam PF00809 Pterin binding enzyme 357 595 6.4E-56 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Gene3D G3DSA:3.20.20.330 2 337 2.1E-127 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Pfam PF02574 Homocysteine S-methyltransferase 16 322 3.7E-79 T 13-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Pfam PF02607 B12 binding domain 660 733 9.3E-24 T 13-10-2018 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 PIRSF PIRSF000381 1 1196 0.0 T 13-10-2018 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-7977|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 SUPERFAMILY SSF82282 6 396 1.03E-117 T 13-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Gene3D G3DSA:1.10.288.10 938 1093 3.1E-125 T 13-10-2018 CDG55_10505 84afbc9e7417131ca3bf03feff3622c8 1228 Gene3D G3DSA:3.40.50.280 745 897 2.1E-54 T 13-10-2018 CDG55_00015 dce1df81f1f4f8db483d201db903d854 137 Pfam PF05225 helix-turn-helix, Psq domain 4 29 1.8E-4 T 13-10-2018 IPR007889 DNA binding HTH domain, Psq-type GO:0003677 CDG55_07675 0767de69bcf94eb2e75a8eca196776c7 144 Gene3D G3DSA:3.30.10.10 77 143 3.3E-18 T 13-10-2018 CDG55_07675 0767de69bcf94eb2e75a8eca196776c7 144 Pfam PF11720 Peptidase inhibitor I78 family 81 144 1.5E-8 T 13-10-2018 IPR021719 Proteinase inhibitor I78 CDG55_07675 0767de69bcf94eb2e75a8eca196776c7 144 Pfam PF03891 Domain of unknown function (DUF333) 31 76 5.6E-23 T 13-10-2018 IPR005590 Protein of unknown function DUF333 CDG55_05420 2a73665d503f59ccbc6f6cc126758d6e 251 Gene3D G3DSA:3.60.21.10 1 219 2.7E-24 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CDG55_05420 2a73665d503f59ccbc6f6cc126758d6e 251 SUPERFAMILY SSF56300 2 233 1.11E-35 T 13-10-2018 CDG55_05420 2a73665d503f59ccbc6f6cc126758d6e 251 Pfam PF00149 Calcineurin-like phosphoesterase 2 188 8.5E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CDG55_03280 00c6c35b2c76d4f59c6ed844aa8ff20c 192 Gene3D G3DSA:1.20.1540.10 5 182 2.0E-15 T 13-10-2018 IPR035952 Rhomboid-like superfamily CDG55_03280 00c6c35b2c76d4f59c6ed844aa8ff20c 192 SUPERFAMILY SSF144091 10 188 3.4E-24 T 13-10-2018 CDG55_03280 00c6c35b2c76d4f59c6ed844aa8ff20c 192 Pfam PF01694 Rhomboid family 40 179 1.6E-12 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CDG55_03280 00c6c35b2c76d4f59c6ed844aa8ff20c 192 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 30 178 1.9E-43 T 13-10-2018 IPR023826 Rhomboid-like serine protease, proteobacteria CDG55_14255 a84b0730d6e77d92f52e0b47bcf3680f 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 17 89 3.0E-35 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14255 a84b0730d6e77d92f52e0b47bcf3680f 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 3 131 6.3E-42 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14255 a84b0730d6e77d92f52e0b47bcf3680f 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 130 20.023 T 13-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14255 a84b0730d6e77d92f52e0b47bcf3680f 139 Gene3D G3DSA:2.60.15.10 2 89 4.8E-30 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14255 a84b0730d6e77d92f52e0b47bcf3680f 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 4 83 1.4E-30 T 13-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14255 a84b0730d6e77d92f52e0b47bcf3680f 139 SUPERFAMILY SSF46604 87 135 1.54E-10 T 13-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14255 a84b0730d6e77d92f52e0b47bcf3680f 139 Gene3D G3DSA:1.20.5.440 90 132 1.0E-7 T 13-10-2018 CDG55_14255 a84b0730d6e77d92f52e0b47bcf3680f 139 SUPERFAMILY SSF51344 3 85 1.96E-25 T 13-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_05490 ac4864dae802bd4eec21b1803c6a4446 337 Gene3D G3DSA:3.40.50.1820 32 334 3.2E-88 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_05490 ac4864dae802bd4eec21b1803c6a4446 337 SUPERFAMILY SSF53474 50 325 2.41E-50 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_05490 ac4864dae802bd4eec21b1803c6a4446 337 Pfam PF12697 Alpha/beta hydrolase family 78 315 8.6E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_05490 ac4864dae802bd4eec21b1803c6a4446 337 PRINTS PR00111 Alpha/beta hydrolase fold signature 101 116 3.6E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_05490 ac4864dae802bd4eec21b1803c6a4446 337 PRINTS PR00111 Alpha/beta hydrolase fold signature 147 160 3.6E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_05490 ac4864dae802bd4eec21b1803c6a4446 337 PRINTS PR00111 Alpha/beta hydrolase fold signature 268 282 3.6E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_05490 ac4864dae802bd4eec21b1803c6a4446 337 PRINTS PR00111 Alpha/beta hydrolase fold signature 161 174 3.6E-13 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_08815 3a491ad60dc98e60d2651088daae89f7 753 SUPERFAMILY SSF56935 39 753 2.31E-99 T 13-10-2018 CDG55_08815 3a491ad60dc98e60d2651088daae89f7 753 Gene3D G3DSA:2.40.170.20 171 752 5.0E-64 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_08815 3a491ad60dc98e60d2651088daae89f7 753 Pfam PF00593 TonB dependent receptor 279 752 1.4E-37 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_08815 3a491ad60dc98e60d2651088daae89f7 753 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 163 1.6E-19 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_08815 3a491ad60dc98e60d2651088daae89f7 753 Gene3D G3DSA:2.170.130.10 47 168 3.0E-23 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_14700 0499bce11af525086b30c460960d6e60 401 Pfam PF00155 Aminotransferase class I and II 27 392 2.7E-82 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDG55_14700 0499bce11af525086b30c460960d6e60 401 Gene3D G3DSA:3.40.640.10 60 301 2.8E-153 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_14700 0499bce11af525086b30c460960d6e60 401 SUPERFAMILY SSF53383 1 397 2.07E-120 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_14700 0499bce11af525086b30c460960d6e60 401 Gene3D G3DSA:3.90.1150.10 11 392 2.8E-153 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_14700 0499bce11af525086b30c460960d6e60 401 PRINTS PR00799 Aspartate aminotransferase signature 342 360 1.2E-34 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CDG55_14700 0499bce11af525086b30c460960d6e60 401 PRINTS PR00799 Aspartate aminotransferase signature 176 195 1.2E-34 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CDG55_14700 0499bce11af525086b30c460960d6e60 401 PRINTS PR00799 Aspartate aminotransferase signature 274 299 1.2E-34 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CDG55_14700 0499bce11af525086b30c460960d6e60 401 PRINTS PR00799 Aspartate aminotransferase signature 207 219 1.2E-34 T 13-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 CDG55_07650 3463660908d2a3c976ac9beb588cc8fe 418 SUPERFAMILY SSF53383 4 416 8.8E-183 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_07650 3463660908d2a3c976ac9beb588cc8fe 418 Pfam PF00464 Serine hydroxymethyltransferase 8 386 4.1E-182 T 13-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CDG55_07650 3463660908d2a3c976ac9beb588cc8fe 418 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 6 417 53.339 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CDG55_07650 3463660908d2a3c976ac9beb588cc8fe 418 Gene3D G3DSA:3.40.640.10 36 288 1.6E-187 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_07650 3463660908d2a3c976ac9beb588cc8fe 418 Gene3D G3DSA:3.90.1150.10 9 396 1.6E-187 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_07650 3463660908d2a3c976ac9beb588cc8fe 418 PIRSF PIRSF000412 2 418 3.0E-170 T 13-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 CDG55_11510 3235542491e0caab16192eb3f324c857 114 SUPERFAMILY SSF57783 2 35 2.89E-14 T 13-10-2018 CDG55_11510 3235542491e0caab16192eb3f324c857 114 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 3 113 5.0E-48 T 13-10-2018 IPR004624 PhnA protein CDG55_11510 3235542491e0caab16192eb3f324c857 114 Pfam PF03831 PhnA domain 44 114 4.6E-32 T 13-10-2018 IPR013988 PhnA protein, C-terminal CDG55_11510 3235542491e0caab16192eb3f324c857 114 Pfam PF08274 PhnA Zinc-Ribbon 3 30 2.1E-16 T 13-10-2018 IPR013987 PhnA protein, N-terminal CDG55_11510 3235542491e0caab16192eb3f324c857 114 Gene3D G3DSA:2.20.25.10 1 41 2.8E-19 T 13-10-2018 CDG55_11510 3235542491e0caab16192eb3f324c857 114 Gene3D G3DSA:2.30.30.40 42 114 4.7E-32 T 13-10-2018 CDG55_11510 3235542491e0caab16192eb3f324c857 114 SUPERFAMILY SSF82057 39 114 4.12E-26 T 13-10-2018 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 Gene3D G3DSA:3.50.50.60 256 401 1.7E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 Gene3D G3DSA:1.10.1060.10 13 146 1.2E-31 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 9 473 1.1E-235 T 13-10-2018 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 28 135 4.6E-36 T 13-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 SUPERFAMILY SSF46548 10 160 1.41E-37 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 SUPERFAMILY SSF51971 148 402 4.0E-71 T 13-10-2018 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 150 460 2.8E-27 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 Gene3D G3DSA:3.40.50.720 147 255 3.5E-19 T 13-10-2018 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 PRINTS PR00419 Adrenodoxin reductase family signature 151 173 2.2E-32 T 13-10-2018 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 PRINTS PR00419 Adrenodoxin reductase family signature 174 187 2.2E-32 T 13-10-2018 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 PRINTS PR00419 Adrenodoxin reductase family signature 216 226 2.2E-32 T 13-10-2018 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 PRINTS PR00419 Adrenodoxin reductase family signature 326 339 2.2E-32 T 13-10-2018 CDG55_02510 30a875f09c2c97f58aef583a3a8099a2 473 PRINTS PR00419 Adrenodoxin reductase family signature 292 306 2.2E-32 T 13-10-2018 CDG55_14115 85815d8063362d0b39a5d661d4dcb86c 405 Pfam PF07690 Major Facilitator Superfamily 23 358 1.1E-34 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_14115 85815d8063362d0b39a5d661d4dcb86c 405 SUPERFAMILY SSF103473 12 399 1.16E-57 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_14115 85815d8063362d0b39a5d661d4dcb86c 405 Gene3D G3DSA:1.20.1250.20 14 398 3.0E-50 T 13-10-2018 CDG55_08080 67fcbca4b1e73466ce5a23b9fdb3e1e8 327 Pfam PF13177 DNA polymerase III, delta subunit 27 173 4.2E-34 T 13-10-2018 CDG55_08080 67fcbca4b1e73466ce5a23b9fdb3e1e8 327 SUPERFAMILY SSF52540 11 211 8.51E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08080 67fcbca4b1e73466ce5a23b9fdb3e1e8 327 Gene3D G3DSA:3.40.50.300 7 171 1.0E-42 T 13-10-2018 CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 24 93 9.9E-20 T 13-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 7 329 32.85 T 13-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 10 328 4.4E-106 T 13-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 Gene3D G3DSA:3.40.1390.10 2 102 2.5E-34 T 13-10-2018 CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 262 288 0.0066 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 226 260 2.3E-4 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 112 145 2.1E-8 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 149 182 2.1E-7 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 Gene3D G3DSA:2.160.10.10 103 312 8.2E-70 T 13-10-2018 CDG55_08900 8da4065057d898697af83f3b695c9dc2 356 SUPERFAMILY SSF51161 34 320 1.11E-72 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_10415 b2346726bc74eebdac1d004fcd593834 376 Pfam PF12698 ABC-2 family transporter protein 19 364 3.0E-29 T 13-10-2018 CDG55_10415 b2346726bc74eebdac1d004fcd593834 376 Gene3D G3DSA:3.40.1710.10 39 184 6.5E-6 T 13-10-2018 CDG55_05920 046ac3ee036a3e29158e4b29a63133c9 290 SUPERFAMILY SSF53474 28 264 3.78E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_05920 046ac3ee036a3e29158e4b29a63133c9 290 Pfam PF07859 alpha/beta hydrolase fold 72 181 1.1E-16 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 CDG55_05920 046ac3ee036a3e29158e4b29a63133c9 290 Gene3D G3DSA:3.40.50.1820 2 276 7.3E-53 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 6 228 9.4E-104 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 PRINTS PR00395 Ribosomal protein S2 signature 160 177 6.8E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 PRINTS PR00395 Ribosomal protein S2 signature 39 48 6.8E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 PRINTS PR00395 Ribosomal protein S2 signature 89 106 6.8E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 PRINTS PR00395 Ribosomal protein S2 signature 8 26 6.8E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 PRINTS PR00395 Ribosomal protein S2 signature 198 212 6.8E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 PRINTS PR00395 Ribosomal protein S2 signature 177 188 6.8E-36 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 Gene3D G3DSA:1.10.287.610 105 152 1.8E-92 T 13-10-2018 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 SUPERFAMILY SSF52313 8 234 2.62E-94 T 13-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 4 227 41.103 T 13-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 Pfam PF00318 Ribosomal protein S2 11 226 1.3E-94 T 13-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09990 630c55ce635ed932595d42453ffe4f5e 250 Gene3D G3DSA:3.40.50.10490 11 221 1.8E-92 T 13-10-2018 CDG55_01910 ed0de89b14cdbc9bbaf007324a54fa57 237 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 6 230 1.7E-31 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CDG55_01910 ed0de89b14cdbc9bbaf007324a54fa57 237 SUPERFAMILY SSF75217 75 235 7.41E-37 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CDG55_01910 ed0de89b14cdbc9bbaf007324a54fa57 237 PIRSF PIRSF015601 1 237 1.0E-47 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CDG55_01910 ed0de89b14cdbc9bbaf007324a54fa57 237 Gene3D G3DSA:3.40.1280.10 4 236 4.9E-33 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDG55_01910 ed0de89b14cdbc9bbaf007324a54fa57 237 Pfam PF04452 RNA methyltransferase 22 234 2.4E-46 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CDG55_14860 1b21d152bf658a55fcb5d62023bbc516 216 SUPERFAMILY SSF46689 2 75 2.14E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_14860 1b21d152bf658a55fcb5d62023bbc516 216 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 61 1.6E-6 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14860 1b21d152bf658a55fcb5d62023bbc516 216 Gene3D G3DSA:1.10.10.60 1 52 1.5E-25 T 13-10-2018 CDG55_14860 1b21d152bf658a55fcb5d62023bbc516 216 Gene3D G3DSA:1.10.357.10 53 216 8.4E-39 T 13-10-2018 CDG55_03410 510ca30f845e63ff51c8ebd44d9bd5ad 386 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 19 372 3.2E-138 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 CDG55_03410 510ca30f845e63ff51c8ebd44d9bd5ad 386 Gene3D G3DSA:3.40.50.1820 24 359 6.9E-137 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_03410 510ca30f845e63ff51c8ebd44d9bd5ad 386 PIRSF PIRSF000443 2 381 8.0E-131 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 CDG55_03410 510ca30f845e63ff51c8ebd44d9bd5ad 386 Gene3D G3DSA:1.10.1740.110 186 291 6.9E-137 T 13-10-2018 CDG55_03410 510ca30f845e63ff51c8ebd44d9bd5ad 386 Pfam PF00561 alpha/beta hydrolase fold 49 358 2.0E-30 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_03410 510ca30f845e63ff51c8ebd44d9bd5ad 386 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 8 373 28.665 T 13-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 CDG55_03410 510ca30f845e63ff51c8ebd44d9bd5ad 386 SUPERFAMILY SSF53474 11 373 5.41E-98 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_10800 409f87a2c7985c16b953f622bfdf76d4 108 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 6 94 2.1E-24 T 13-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 CDG55_10800 409f87a2c7985c16b953f622bfdf76d4 108 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 12 86 4.0E-30 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CDG55_10800 409f87a2c7985c16b953f622bfdf76d4 108 Gene3D G3DSA:3.30.110.60 2 104 3.7E-31 T 13-10-2018 IPR035920 YhbY-like superfamily CDG55_10800 409f87a2c7985c16b953f622bfdf76d4 108 Pfam PF01985 CRS1 / YhbY (CRM) domain 5 87 2.3E-21 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CDG55_10800 409f87a2c7985c16b953f622bfdf76d4 108 SMART SM01103 4 87 8.2E-38 T 13-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 CDG55_10800 409f87a2c7985c16b953f622bfdf76d4 108 SUPERFAMILY SSF75471 4 97 4.05E-28 T 13-10-2018 IPR035920 YhbY-like superfamily CDG55_08260 778d878fe8ba9a3695e4f973e3641239 143 Pfam PF00571 CBS domain 15 61 6.1E-12 T 13-10-2018 IPR000644 CBS domain CDG55_08260 778d878fe8ba9a3695e4f973e3641239 143 Pfam PF00571 CBS domain 73 127 7.2E-13 T 13-10-2018 IPR000644 CBS domain CDG55_08260 778d878fe8ba9a3695e4f973e3641239 143 SMART SM00116 15 62 1.5E-7 T 13-10-2018 IPR000644 CBS domain CDG55_08260 778d878fe8ba9a3695e4f973e3641239 143 SMART SM00116 80 127 1.2E-8 T 13-10-2018 IPR000644 CBS domain CDG55_08260 778d878fe8ba9a3695e4f973e3641239 143 SUPERFAMILY SSF54631 11 140 2.27E-33 T 13-10-2018 CDG55_08260 778d878fe8ba9a3695e4f973e3641239 143 Gene3D G3DSA:3.10.580.10 1 143 4.0E-44 T 13-10-2018 CDG55_06670 d2e41d80917f8a65f06a776a5a024429 281 Pfam PF11726 Inovirus Gp2 114 281 2.5E-17 T 13-10-2018 CDG55_06360 3f6796cca3483aa77e3a69fc6822aefa 497 Pfam PF14224 Domain of unknown function (DUF4331) 21 486 2.9E-146 T 13-10-2018 IPR025566 Protein of unknown function DUF4331 CDG55_12870 e0a7d1e11c5d4868065d51b1f434d3e0 123 Gene3D G3DSA:1.20.1270.180 14 117 3.4E-9 T 13-10-2018 CDG55_12870 e0a7d1e11c5d4868065d51b1f434d3e0 123 Pfam PF07007 Lysozyme inhibitor LprI 23 103 2.7E-12 T 13-10-2018 IPR009739 Lysozyme inhibitor LprI, N-terminal CDG55_02245 25116da215a767af18061993951fdac5 183 Pfam PF01381 Helix-turn-helix 15 66 2.0E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_02245 25116da215a767af18061993951fdac5 183 SUPERFAMILY SSF47413 8 74 8.85E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_02245 25116da215a767af18061993951fdac5 183 Pfam PF07883 Cupin domain 131 176 9.2E-8 T 13-10-2018 IPR013096 Cupin 2, conserved barrel CDG55_02245 25116da215a767af18061993951fdac5 183 Gene3D G3DSA:2.60.120.10 94 183 1.9E-15 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_02245 25116da215a767af18061993951fdac5 183 SMART SM00530 14 69 1.9E-13 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_02245 25116da215a767af18061993951fdac5 183 SUPERFAMILY SSF51182 91 178 1.16E-12 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CDG55_02245 25116da215a767af18061993951fdac5 183 Gene3D G3DSA:1.10.260.40 1 77 1.6E-18 T 13-10-2018 CDG55_06645 ba1d0258f29b42eb8a4b016963b6bfd3 227 Gene3D G3DSA:2.60.120.10 9 227 1.5E-75 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_06645 ba1d0258f29b42eb8a4b016963b6bfd3 227 Pfam PF02678 Pirin 12 119 4.7E-32 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 CDG55_06645 ba1d0258f29b42eb8a4b016963b6bfd3 227 SUPERFAMILY SSF51182 4 226 6.85E-62 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CDG55_06645 ba1d0258f29b42eb8a4b016963b6bfd3 227 PIRSF PIRSF006232 1 223 6.8E-45 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 CDG55_06645 ba1d0258f29b42eb8a4b016963b6bfd3 227 Gene3D G3DSA:2.60.120.10 12 135 1.5E-75 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_07815 894794e838fb982c3efec4c358bc0864 244 Pfam PF01980 Uncharacterised protein family UPF0066 21 151 6.6E-39 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain CDG55_07815 894794e838fb982c3efec4c358bc0864 244 Gene3D G3DSA:2.40.30.70 1 150 5.5E-44 T 13-10-2018 IPR036414 YaeB, N-terminal domain superfamily CDG55_07815 894794e838fb982c3efec4c358bc0864 244 SUPERFAMILY SSF118196 5 237 1.44E-65 T 13-10-2018 IPR036413 YaeB-like superfamily CDG55_07815 894794e838fb982c3efec4c358bc0864 244 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 5 154 1.3E-36 T 13-10-2018 IPR023370 YaeB-like, N-terminal domain CDG55_07815 894794e838fb982c3efec4c358bc0864 244 Gene3D G3DSA:3.30.2310.10 153 239 2.1E-11 T 13-10-2018 CDG55_10120 2642e848f4ae24b739b3447b19732a33 356 Pfam PF02618 YceG-like family 61 346 1.5E-78 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CDG55_10120 2642e848f4ae24b739b3447b19732a33 356 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 22 352 1.1E-86 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CDG55_10120 2642e848f4ae24b739b3447b19732a33 356 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 30 352 32.968 T 13-10-2018 IPR003770 Endolytic murein transglycosylase CDG55_10120 2642e848f4ae24b739b3447b19732a33 356 Gene3D G3DSA:1.10.8.1150 55 129 5.2E-8 T 13-10-2018 CDG55_10120 2642e848f4ae24b739b3447b19732a33 356 Gene3D G3DSA:3.30.160.60 320 356 1.3E-16 T 13-10-2018 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 46.231 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 SUPERFAMILY SSF53098 3 155 2.01E-52 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 Gene3D G3DSA:3.30.420.10 2 158 6.3E-51 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 3.4E-59 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 7.2E-36 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 7.2E-36 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 7.2E-36 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 7.2E-36 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 7.2E-36 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDG55_07360 92ab39cea11ff8d62d08256059c2298c 181 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 154 4.1E-62 T 13-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 CDG55_13155 120526c0119e77538337c4241b305183 198 Pfam PF01810 LysE type translocator 14 197 1.4E-38 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 SUPERFAMILY SSF52540 3 241 2.62E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 Pfam PF12848 ABC transporter 223 299 8.8E-12 T 13-10-2018 IPR032781 ABC-transporter extension domain CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 Pfam PF00005 ABC transporter 19 183 2.7E-24 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 SMART SM00382 28 230 6.1E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 SMART SM00382 343 513 4.3E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 Pfam PF00005 ABC transporter 335 467 1.4E-17 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 Gene3D G3DSA:3.40.50.300 4 278 3.3E-64 T 13-10-2018 CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 SUPERFAMILY SSF52540 304 512 3.9E-41 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 Gene3D G3DSA:3.40.50.300 280 550 3.1E-62 T 13-10-2018 CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 Pfam PF16326 ABC transporter C-terminal domain 561 629 7.0E-17 T 13-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 CDG55_12815 fef14467813e6a59f31a9fc9a2d8cdc0 635 Gene3D G3DSA:1.10.287.380 551 635 1.7E-19 T 13-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 CDG55_12985 f1191ba27d4b31c2c744ea3649a12384 310 SMART SM00363 22 77 2.9E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_12985 f1191ba27d4b31c2c744ea3649a12384 310 SUPERFAMILY SSF55120 96 307 1.44E-59 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_12985 f1191ba27d4b31c2c744ea3649a12384 310 Pfam PF01479 S4 domain 22 68 2.2E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_12985 f1191ba27d4b31c2c744ea3649a12384 310 SUPERFAMILY SSF55174 21 72 6.41E-10 T 13-10-2018 CDG55_12985 f1191ba27d4b31c2c744ea3649a12384 310 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 18 307 1.6E-80 T 13-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_12985 f1191ba27d4b31c2c744ea3649a12384 310 Gene3D G3DSA:3.10.290.10 11 77 2.5E-18 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CDG55_12985 f1191ba27d4b31c2c744ea3649a12384 310 Pfam PF00849 RNA pseudouridylate synthase 104 248 2.5E-31 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_12985 f1191ba27d4b31c2c744ea3649a12384 310 Gene3D G3DSA:3.30.2350.10 95 310 1.8E-69 T 13-10-2018 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 Hamap MF_00456 Glutamate 5-kinase [proB]. 15 268 35.554 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 Pfam PF01472 PUA domain 286 360 2.7E-19 T 13-10-2018 IPR002478 PUA domain GO:0003723 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 PIRSF PIRSF000729 10 377 5.8E-130 T 13-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 SMART SM00359 286 364 1.8E-14 T 13-10-2018 IPR002478 PUA domain GO:0003723 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 SUPERFAMILY SSF53633 15 265 8.12E-73 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 Gene3D G3DSA:3.40.1160.10 5 274 2.2E-93 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 Gene3D G3DSA:2.30.130.10 275 377 3.8E-30 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 PRINTS PR00474 Glutamate 5-kinase family signature 158 185 3.0E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 PRINTS PR00474 Glutamate 5-kinase family signature 126 147 3.0E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 PRINTS PR00474 Glutamate 5-kinase family signature 86 114 3.0E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 PRINTS PR00474 Glutamate 5-kinase family signature 218 238 3.0E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 PRINTS PR00474 Glutamate 5-kinase family signature 52 66 3.0E-48 T 13-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 Pfam PF00696 Amino acid kinase family 15 244 4.1E-47 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 TIGRFAM TIGR01027 proB: glutamate 5-kinase 15 375 1.4E-128 T 13-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 CDG55_06175 60a808b3de599f176f2b2bccd2648f0d 377 SUPERFAMILY SSF88697 286 376 5.3E-20 T 13-10-2018 IPR015947 PUA-like superfamily CDG55_02085 5fffae02f9bc8c2fec1bf4427b53f331 370 TIGRFAM TIGR03033 phage_rel_nuc: putative phage-type endonuclease 56 211 1.2E-37 T 13-10-2018 IPR017482 Putative phage-type endonuclease CDG55_02085 5fffae02f9bc8c2fec1bf4427b53f331 370 Pfam PF09588 YqaJ-like viral recombinase domain 61 203 8.7E-35 T 13-10-2018 IPR019080 YqaJ viral recombinase CDG55_02085 5fffae02f9bc8c2fec1bf4427b53f331 370 SUPERFAMILY SSF52980 55 244 2.52E-32 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_02085 5fffae02f9bc8c2fec1bf4427b53f331 370 Gene3D G3DSA:3.90.320.10 56 264 9.5E-37 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal CDG55_08190 ed3f23267f263efcfac0c78088555b3f 381 SUPERFAMILY SSF52540 59 197 4.57E-15 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08190 ed3f23267f263efcfac0c78088555b3f 381 Gene3D G3DSA:3.40.50.300 24 201 2.0E-22 T 13-10-2018 CDG55_08190 ed3f23267f263efcfac0c78088555b3f 381 Hamap MF_01919 Cell division protein ZapE [zapE]. 16 374 50.505 T 13-10-2018 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 CDG55_08190 ed3f23267f263efcfac0c78088555b3f 381 Pfam PF03969 AFG1-like ATPase 17 369 2.9E-130 T 13-10-2018 IPR005654 ATPase, AFG1-like GO:0005524 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 Gene3D G3DSA:2.60.34.10 380 518 6.0E-48 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 SUPERFAMILY SSF100920 383 535 1.57E-48 T 13-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 Gene3D G3DSA:3.30.420.40 191 361 1.2E-109 T 13-10-2018 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 615 42.733 T 13-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 SUPERFAMILY SSF53067 19 194 4.86E-53 T 13-10-2018 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 SUPERFAMILY SSF53067 201 376 2.82E-46 T 13-10-2018 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 Gene3D G3DSA:3.30.420.40 22 374 1.2E-109 T 13-10-2018 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 Gene3D G3DSA:3.90.640.10 239 311 1.2E-109 T 13-10-2018 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 PRINTS PR00301 70kDa heat shock protein signature 212 222 8.5E-51 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 PRINTS PR00301 70kDa heat shock protein signature 149 169 8.5E-51 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 PRINTS PR00301 70kDa heat shock protein signature 329 345 8.5E-51 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 PRINTS PR00301 70kDa heat shock protein signature 465 481 8.5E-51 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 PRINTS PR00301 70kDa heat shock protein signature 360 380 8.5E-51 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 PRINTS PR00301 70kDa heat shock protein signature 20 33 8.5E-51 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 PRINTS PR00301 70kDa heat shock protein signature 384 403 8.5E-51 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 Pfam PF00012 Hsp70 protein 21 594 1.3E-171 T 13-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 613 4.1E-264 T 13-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 SUPERFAMILY SSF100934 503 613 1.53E-26 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CDG55_07015 85d51878e29d22aaf5ac15499631b8fa 619 Gene3D G3DSA:1.20.1270.10 519 614 3.7E-20 T 13-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 CDG55_08290 b5d17def6da3d2e97a354b05a9996846 198 Pfam PF00881 Nitroreductase family 8 176 5.8E-15 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CDG55_08290 b5d17def6da3d2e97a354b05a9996846 198 Gene3D G3DSA:3.40.109.10 1 198 1.3E-81 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDG55_08290 b5d17def6da3d2e97a354b05a9996846 198 SUPERFAMILY SSF55469 3 197 3.8E-67 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDG55_13195 65a2822dd188cc18e5dcc48508e08702 704 Pfam PF00593 TonB dependent receptor 256 703 2.1E-47 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_13195 65a2822dd188cc18e5dcc48508e08702 704 Gene3D G3DSA:2.170.130.10 50 180 8.5E-31 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_13195 65a2822dd188cc18e5dcc48508e08702 704 Pfam PF07715 TonB-dependent Receptor Plug Domain 70 169 2.0E-17 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_13195 65a2822dd188cc18e5dcc48508e08702 704 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 71 703 1.9E-90 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CDG55_13195 65a2822dd188cc18e5dcc48508e08702 704 Gene3D G3DSA:2.40.170.20 181 704 4.0E-114 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_13195 65a2822dd188cc18e5dcc48508e08702 704 SUPERFAMILY SSF56935 31 704 1.35E-115 T 13-10-2018 CDG55_09945 43d19fbe26184d63c93e4c13142c0b63 243 Pfam PF00753 Metallo-beta-lactamase superfamily 46 173 9.8E-10 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_09945 43d19fbe26184d63c93e4c13142c0b63 243 Gene3D G3DSA:3.60.15.10 4 243 4.3E-77 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_09945 43d19fbe26184d63c93e4c13142c0b63 243 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 10 234 1.6E-90 T 13-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CDG55_09945 43d19fbe26184d63c93e4c13142c0b63 243 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 174 243 3.0E-22 T 13-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CDG55_09945 43d19fbe26184d63c93e4c13142c0b63 243 PIRSF PIRSF005457 1 243 1.5E-90 T 13-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CDG55_09945 43d19fbe26184d63c93e4c13142c0b63 243 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 5 243 38.931 T 13-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 CDG55_09945 43d19fbe26184d63c93e4c13142c0b63 243 SMART SM00849 15 173 8.2E-28 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_09945 43d19fbe26184d63c93e4c13142c0b63 243 SUPERFAMILY SSF56281 4 242 9.52E-61 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_01545 84a8feb1f47fcbbea91e8bb03c19b76d 282 SUPERFAMILY SSF52821 8 145 1.57E-26 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_01545 84a8feb1f47fcbbea91e8bb03c19b76d 282 Gene3D G3DSA:3.40.250.10 151 276 4.2E-28 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_01545 84a8feb1f47fcbbea91e8bb03c19b76d 282 SUPERFAMILY SSF52821 151 280 3.27E-29 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_01545 84a8feb1f47fcbbea91e8bb03c19b76d 282 Gene3D G3DSA:3.40.250.10 7 141 1.6E-26 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_01545 84a8feb1f47fcbbea91e8bb03c19b76d 282 Pfam PF00581 Rhodanese-like domain 157 268 7.8E-16 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_01545 84a8feb1f47fcbbea91e8bb03c19b76d 282 Pfam PF00581 Rhodanese-like domain 14 122 5.6E-12 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_01545 84a8feb1f47fcbbea91e8bb03c19b76d 282 SMART SM00450 12 127 5.5E-8 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_01545 84a8feb1f47fcbbea91e8bb03c19b76d 282 SMART SM00450 154 273 7.0E-19 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_10605 ec21fc9b91f8dfe0c141930a1da4fc8d 390 Pfam PF00465 Iron-containing alcohol dehydrogenase 20 382 4.9E-128 T 13-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 CDG55_10605 ec21fc9b91f8dfe0c141930a1da4fc8d 390 Gene3D G3DSA:1.20.1090.10 193 390 4.1E-78 T 13-10-2018 CDG55_10605 ec21fc9b91f8dfe0c141930a1da4fc8d 390 SUPERFAMILY SSF56796 13 389 6.41E-136 T 13-10-2018 CDG55_10605 ec21fc9b91f8dfe0c141930a1da4fc8d 390 Gene3D G3DSA:3.40.50.1970 8 191 7.9E-56 T 13-10-2018 CDG55_01720 9d114757d3f1765456c0f4a81c69ac49 303 Gene3D G3DSA:3.40.50.1820 44 300 5.8E-79 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_01720 9d114757d3f1765456c0f4a81c69ac49 303 SUPERFAMILY SSF53474 45 296 1.65E-56 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_01720 9d114757d3f1765456c0f4a81c69ac49 303 Pfam PF07859 alpha/beta hydrolase fold 75 277 9.9E-59 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 CDG55_09760 e7548c8b7a958ae3753d79ffb18cce31 333 SUPERFAMILY SSF46785 15 57 6.8E-7 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_09760 e7548c8b7a958ae3753d79ffb18cce31 333 Pfam PF13280 WYL domain 158 330 3.8E-23 T 13-10-2018 IPR026881 WYL domain CDG55_01065 4e99d28962dc76541eac1f8b1c826c10 134 SMART SM00974 15 91 1.2E-9 T 13-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding CDG55_01065 4e99d28962dc76541eac1f8b1c826c10 134 Pfam PF10544 T5orf172 domain 7 81 2.3E-12 T 13-10-2018 IPR018306 Bacteriophage T5, Orf172 DNA-binding CDG55_12115 c1fc235540b4d5a77585ac20d6559760 279 Pfam PF00149 Calcineurin-like phosphoesterase 8 130 1.5E-13 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CDG55_12115 c1fc235540b4d5a77585ac20d6559760 279 PIRSF PIRSF000903 4 278 1.6E-91 T 13-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 CDG55_12115 c1fc235540b4d5a77585ac20d6559760 279 SUPERFAMILY SSF56300 7 267 2.06E-48 T 13-10-2018 CDG55_12115 c1fc235540b4d5a77585ac20d6559760 279 Gene3D G3DSA:3.60.21.10 6 277 2.6E-65 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CDG55_12115 c1fc235540b4d5a77585ac20d6559760 279 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 6 273 9.2E-83 T 13-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 CDG55_11755 adbed48d40781a46bc3d12a3d81b6c91 443 Pfam PF03553 Na+/H+ antiporter family 86 221 3.0E-12 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CDG55_11755 adbed48d40781a46bc3d12a3d81b6c91 443 Pfam PF03553 Na+/H+ antiporter family 244 435 1.7E-8 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CDG55_00680 4f4fe74057314074a2946632a33e26d4 572 SUPERFAMILY SSF51905 5 532 1.68E-41 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_00680 4f4fe74057314074a2946632a33e26d4 572 Pfam PF00732 GMC oxidoreductase 8 283 5.9E-11 T 13-10-2018 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 Reactome: R-HSA-6798163 CDG55_00680 4f4fe74057314074a2946632a33e26d4 572 Pfam PF05199 GMC oxidoreductase 468 526 1.6E-17 T 13-10-2018 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 Reactome: R-HSA-6798163 CDG55_00680 4f4fe74057314074a2946632a33e26d4 572 Gene3D G3DSA:3.50.50.60 451 534 1.0E-19 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_00680 4f4fe74057314074a2946632a33e26d4 572 Gene3D G3DSA:3.50.50.60 163 328 7.0E-27 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_00680 4f4fe74057314074a2946632a33e26d4 572 Gene3D G3DSA:3.50.50.60 3 162 2.8E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_13330 4def94ab5649d5fdc4afef4c072ac30e 603 Pfam PF00361 Proton-conducting membrane transporter 143 436 2.3E-38 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_13330 4def94ab5649d5fdc4afef4c072ac30e 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 394 420 3.3E-6 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_13330 4def94ab5649d5fdc4afef4c072ac30e 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 251 275 3.3E-6 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_13330 4def94ab5649d5fdc4afef4c072ac30e 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 148 167 3.3E-6 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_13330 4def94ab5649d5fdc4afef4c072ac30e 603 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 178 202 3.3E-6 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_13760 23f16ddc9ee6ee50009a15ee75982c25 145 SUPERFAMILY SSF54637 7 133 5.72E-35 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_13760 23f16ddc9ee6ee50009a15ee75982c25 145 Pfam PF13279 Thioesterase-like superfamily 16 129 5.8E-19 T 13-10-2018 CDG55_13760 23f16ddc9ee6ee50009a15ee75982c25 145 Gene3D G3DSA:3.10.129.10 2 133 1.2E-40 T 13-10-2018 CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 6.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 6.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 6.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 6.1E-25 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 Gene3D G3DSA:3.40.50.720 1 277 1.9E-68 T 13-10-2018 CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.0E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 SUPERFAMILY SSF51735 1 271 7.03E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_10660 bcf59d3c134a209ae993e5a22ce2f19c 279 Pfam PF00106 short chain dehydrogenase 7 199 3.0E-48 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03020 786f3e67de4f67bb978e33fad861c661 337 SUPERFAMILY SSF144083 272 335 5.89E-14 T 13-10-2018 CDG55_03020 786f3e67de4f67bb978e33fad861c661 337 Pfam PF01544 CorA-like Mg2+ transporter protein 27 332 6.9E-53 T 13-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 CDG55_03020 786f3e67de4f67bb978e33fad861c661 337 Gene3D G3DSA:1.20.58.340 261 337 3.6E-15 T 13-10-2018 CDG55_03020 786f3e67de4f67bb978e33fad861c661 337 SUPERFAMILY SSF143865 2 274 3.92E-35 T 13-10-2018 CDG55_11625 6852d75f9040fba86131a67db9c98375 161 PIRSF PIRSF030820 2 160 6.3E-34 T 13-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 CDG55_11625 6852d75f9040fba86131a67db9c98375 161 Pfam PF06073 Bacterial protein of unknown function (DUF934) 54 155 6.8E-32 T 13-10-2018 IPR008318 Uncharacterised conserved protein UCP030820 CDG55_06755 79152e7ea116821a42f93d30f2c66a51 1040 Pfam PF13289 SIR2-like domain 104 243 2.9E-21 T 13-10-2018 IPR039444 SIR2-like domain CDG55_06755 79152e7ea116821a42f93d30f2c66a51 1040 SUPERFAMILY SSF52540 346 489 4.3E-10 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06755 79152e7ea116821a42f93d30f2c66a51 1040 SUPERFAMILY SSF48452 806 931 2.21E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_06755 79152e7ea116821a42f93d30f2c66a51 1040 Gene3D G3DSA:1.25.40.10 621 974 1.6E-16 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_06755 79152e7ea116821a42f93d30f2c66a51 1040 Gene3D G3DSA:3.40.50.300 348 544 3.6E-5 T 13-10-2018 CDG55_06755 79152e7ea116821a42f93d30f2c66a51 1040 SUPERFAMILY SSF52540 233 548 6.54E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10700 5fb63d0f6a6ea8f29ea2ccfe1ba98394 87 Pfam PF10985 Protein of unknown function (DUF2805) 13 83 1.0E-34 T 13-10-2018 IPR019882 Conserved hypothetical protein CHP03643 CDG55_10700 5fb63d0f6a6ea8f29ea2ccfe1ba98394 87 TIGRFAM TIGR03643 TIGR03643: TIGR03643 family protein 11 82 1.1E-35 T 13-10-2018 IPR019882 Conserved hypothetical protein CHP03643 CDG55_01810 7f3f3d763598a6fe67da30a31381e823 300 SUPERFAMILY SSF54211 133 277 2.96E-47 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_01810 7f3f3d763598a6fe67da30a31381e823 300 SUPERFAMILY SSF54211 3 125 1.52E-36 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_01810 7f3f3d763598a6fe67da30a31381e823 300 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 298 3.3E-110 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CDG55_01810 7f3f3d763598a6fe67da30a31381e823 300 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 279 42.558 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CDG55_01810 7f3f3d763598a6fe67da30a31381e823 300 Gene3D G3DSA:3.30.230.20 1 127 2.3E-42 T 13-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CDG55_01810 7f3f3d763598a6fe67da30a31381e823 300 Gene3D G3DSA:3.30.1700.10 128 299 1.1E-61 T 13-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CDG55_01810 7f3f3d763598a6fe67da30a31381e823 300 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 274 1.5E-96 T 13-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 CDG55_05515 7a72acded21a98b6c0b818bf6107883a 268 SUPERFAMILY SSF144091 16 217 1.31E-37 T 13-10-2018 CDG55_05515 7a72acded21a98b6c0b818bf6107883a 268 Pfam PF01694 Rhomboid family 65 213 6.2E-34 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CDG55_05515 7a72acded21a98b6c0b818bf6107883a 268 Gene3D G3DSA:1.20.1540.10 11 244 6.0E-34 T 13-10-2018 IPR035952 Rhomboid-like superfamily CDG55_13990 576dcaadf5dc34f93d3128f897d18d69 262 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 6 193 1.6E-23 T 13-10-2018 IPR010239 Conserved hypothetical protein CHP02001 CDG55_13990 576dcaadf5dc34f93d3128f897d18d69 262 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 31 163 5.9E-20 T 13-10-2018 IPR010239 Conserved hypothetical protein CHP02001 CDG55_04565 996faff7e680d03dd1a4e1315017def8 247 Hamap MF_01274 Type III pantothenate kinase [coaX]. 2 242 19.599 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CDG55_04565 996faff7e680d03dd1a4e1315017def8 247 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 4 237 7.3E-29 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CDG55_04565 996faff7e680d03dd1a4e1315017def8 247 Pfam PF03309 Type III pantothenate kinase 4 198 2.8E-43 T 13-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 CDG55_04565 996faff7e680d03dd1a4e1315017def8 247 SUPERFAMILY SSF53067 118 239 7.4E-26 T 13-10-2018 CDG55_04565 996faff7e680d03dd1a4e1315017def8 247 Gene3D G3DSA:3.30.420.40 6 234 1.7E-47 T 13-10-2018 CDG55_04565 996faff7e680d03dd1a4e1315017def8 247 SUPERFAMILY SSF53067 4 111 1.65E-20 T 13-10-2018 CDG55_04565 996faff7e680d03dd1a4e1315017def8 247 Gene3D G3DSA:3.30.420.490 119 227 1.7E-47 T 13-10-2018 CDG55_07835 73a2fd239cdd4c7bc1429f9cdfd67a04 303 SUPERFAMILY SSF51391 183 299 1.44E-23 T 13-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_07835 73a2fd239cdd4c7bc1429f9cdfd67a04 303 Pfam PF00293 NUDIX domain 9 125 4.2E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_07835 73a2fd239cdd4c7bc1429f9cdfd67a04 303 Gene3D G3DSA:3.20.20.70 149 302 2.0E-28 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_07835 73a2fd239cdd4c7bc1429f9cdfd67a04 303 SUPERFAMILY SSF55811 5 126 3.66E-27 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_07835 73a2fd239cdd4c7bc1429f9cdfd67a04 303 Pfam PF02581 Thiamine monophosphate synthase 153 298 1.3E-20 T 13-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_07835 73a2fd239cdd4c7bc1429f9cdfd67a04 303 Gene3D G3DSA:3.90.79.10 5 129 1.0E-26 T 13-10-2018 CDG55_07835 73a2fd239cdd4c7bc1429f9cdfd67a04 303 PRINTS PR00502 NUDIX hydrolase family signature 34 48 1.8E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDG55_07835 73a2fd239cdd4c7bc1429f9cdfd67a04 303 PRINTS PR00502 NUDIX hydrolase family signature 48 63 1.8E-6 T 13-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 CDG55_15080 cd411dca3206b2e905607a35e587ca4c 232 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 116 217 1.9E-10 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CDG55_15080 cd411dca3206b2e905607a35e587ca4c 232 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 83 1.7E-8 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CDG55_15080 cd411dca3206b2e905607a35e587ca4c 232 SMART SM00855 3 176 1.3E-10 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CDG55_15080 cd411dca3206b2e905607a35e587ca4c 232 SUPERFAMILY SSF53254 1 222 5.76E-34 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CDG55_15080 cd411dca3206b2e905607a35e587ca4c 232 PIRSF PIRSF000709 1 82 2.7E-4 T 13-10-2018 CDG55_15080 cd411dca3206b2e905607a35e587ca4c 232 Gene3D G3DSA:3.40.50.1240 1 227 7.8E-33 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CDG55_08860 4a221a718e8cc9ca6c6fe2dbf638210c 457 Pfam PF03109 ABC1 family 128 232 1.5E-26 T 13-10-2018 IPR004147 UbiB domain CDG55_08860 4a221a718e8cc9ca6c6fe2dbf638210c 457 SUPERFAMILY SSF56112 106 317 2.55E-10 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SUPERFAMILY SSF50249 429 534 8.21E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SUPERFAMILY SSF50249 189 277 2.69E-28 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Pfam PF00575 S1 RNA binding domain 189 260 2.4E-22 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Pfam PF00575 S1 RNA binding domain 18 86 2.2E-8 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Pfam PF00575 S1 RNA binding domain 450 520 7.2E-15 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Pfam PF00575 S1 RNA binding domain 275 347 2.6E-21 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Pfam PF00575 S1 RNA binding domain 102 171 4.7E-14 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Pfam PF00575 S1 RNA binding domain 362 434 1.1E-19 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PIRSF PIRSF002111 1 534 3.1E-213 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Gene3D G3DSA:2.40.50.140 187 268 2.0E-29 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SMART SM00316 190 260 5.8E-30 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SMART SM00316 275 347 1.9E-25 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SMART SM00316 362 434 1.5E-21 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SMART SM00316 103 171 3.8E-11 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SMART SM00316 19 87 1.4E-8 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SMART SM00316 449 520 3.5E-20 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Gene3D G3DSA:2.40.50.140 100 183 6.3E-9 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Gene3D G3DSA:2.40.50.140 5 99 7.5E-18 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.7E-87 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Gene3D G3DSA:2.40.50.140 445 528 2.6E-20 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Gene3D G3DSA:2.40.50.140 358 444 8.1E-25 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 Gene3D G3DSA:2.40.50.140 269 357 1.6E-28 T 13-10-2018 CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SUPERFAMILY SSF50249 103 184 8.58E-16 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SUPERFAMILY SSF50249 255 371 1.19E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SUPERFAMILY SSF50249 347 437 4.58E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 SUPERFAMILY SSF50249 2 112 2.69E-21 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_08150 631c57ba93ad75a1afa604b43da17abb 560 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 9.7E-211 T 13-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 CDG55_01765 3b2f8137ef4be2d5d73258d679e690ce 150 Pfam PF01047 MarR family 35 91 2.8E-12 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_01765 3b2f8137ef4be2d5d73258d679e690ce 150 SMART SM00347 28 126 1.0E-14 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_01765 3b2f8137ef4be2d5d73258d679e690ce 150 SUPERFAMILY SSF46785 2 143 5.4E-28 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_01765 3b2f8137ef4be2d5d73258d679e690ce 150 Gene3D G3DSA:1.10.10.10 4 138 3.3E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_00840 28212aff70ab7c0ca9bc6dbe8d0ebb8d 410 Pfam PF13635 Domain of unknown function (DUF4143) 250 353 1.1E-8 T 13-10-2018 IPR025420 Domain of unknown function DUF4143 CDG55_00840 28212aff70ab7c0ca9bc6dbe8d0ebb8d 410 Pfam PF13173 AAA domain 24 152 4.8E-35 T 13-10-2018 CDG55_00840 28212aff70ab7c0ca9bc6dbe8d0ebb8d 410 SUPERFAMILY SSF52540 7 177 4.03E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_07495 72852d7820cfe8a946f67027be3584a5 260 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 2 89 1.3E-8 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CDG55_07495 72852d7820cfe8a946f67027be3584a5 260 Gene3D G3DSA:3.40.50.720 1 155 1.2E-42 T 13-10-2018 CDG55_07495 72852d7820cfe8a946f67027be3584a5 260 SUPERFAMILY SSF51735 2 157 2.78E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_07495 72852d7820cfe8a946f67027be3584a5 260 Gene3D G3DSA:1.10.1040.20 156 256 2.4E-34 T 13-10-2018 IPR037108 TM1727-like, C-terminal domain superfamily CDG55_07495 72852d7820cfe8a946f67027be3584a5 260 SUPERFAMILY SSF48179 159 257 3.4E-24 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_07495 72852d7820cfe8a946f67027be3584a5 260 Pfam PF10728 Domain of unknown function (DUF2520) 126 250 3.1E-28 T 13-10-2018 IPR018931 Domain of unknown function DUF2520 CDG55_12135 a7a428f026440233c952d9218ca347d9 142 Gene3D G3DSA:3.90.1180.10 1 142 4.9E-62 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_12135 a7a428f026440233c952d9218ca347d9 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 6 142 6.4E-64 T 13-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12135 a7a428f026440233c952d9218ca347d9 142 PIRSF PIRSF002181 1 142 1.1E-49 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CDG55_12135 a7a428f026440233c952d9218ca347d9 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.533 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CDG55_12135 a7a428f026440233c952d9218ca347d9 142 SUPERFAMILY SSF52161 1 140 2.09E-58 T 13-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_12135 a7a428f026440233c952d9218ca347d9 142 Pfam PF00572 Ribosomal protein L13 15 138 2.7E-56 T 13-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 CDG55_14020 92bfd14b679be84c7105fb09da11de0b 559 Gene3D G3DSA:3.30.300.310 463 559 1.7E-32 T 13-10-2018 CDG55_14020 92bfd14b679be84c7105fb09da11de0b 559 Pfam PF00501 AMP-binding enzyme 31 466 6.4E-108 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CDG55_14020 92bfd14b679be84c7105fb09da11de0b 559 Gene3D G3DSA:3.40.50.12780 13 462 1.7E-113 T 13-10-2018 CDG55_14020 92bfd14b679be84c7105fb09da11de0b 559 Pfam PF13193 AMP-binding enzyme C-terminal domain 475 549 1.1E-19 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CDG55_14020 92bfd14b679be84c7105fb09da11de0b 559 SUPERFAMILY SSF56801 20 558 5.23E-151 T 13-10-2018 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 Pfam PF13328 HD domain 67 214 9.4E-38 T 13-10-2018 IPR003607 HD/PDEase domain CDG55_03785 688fe46200b6792362d217a4b749d89a 768 SUPERFAMILY SSF109604 33 229 9.1E-45 T 13-10-2018 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 Gene3D G3DSA:1.10.3210.10 26 230 2.6E-42 T 13-10-2018 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 Gene3D G3DSA:3.10.20.30 430 502 1.1E-28 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_03785 688fe46200b6792362d217a4b749d89a 768 Pfam PF02824 TGS domain 434 493 1.1E-18 T 13-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 Pfam PF13291 ACT domain 689 763 2.5E-18 T 13-10-2018 IPR002912 ACT domain CDG55_03785 688fe46200b6792362d217a4b749d89a 768 Gene3D G3DSA:3.30.460.10 232 362 7.4E-50 T 13-10-2018 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 SUPERFAMILY SSF55021 689 765 6.66E-13 T 13-10-2018 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 SUPERFAMILY SSF81271 432 493 1.94E-18 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 79 762 9.2E-172 T 13-10-2018 IPR004811 RelA/SpoT family GO:0015969 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 SMART SM00954 274 383 4.0E-61 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 Pfam PF04607 Region found in RelA / SpoT proteins 274 382 1.2E-34 T 13-10-2018 IPR007685 RelA/SpoT GO:0015969 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 Gene3D G3DSA:3.30.70.260 690 766 2.6E-17 T 13-10-2018 CDG55_03785 688fe46200b6792362d217a4b749d89a 768 SUPERFAMILY SSF81301 231 388 9.97E-59 T 13-10-2018 CDG55_07660 5c3f10e8f8c2bff5123f8d7caff559a1 84 Pfam PF00037 4Fe-4S binding domain 5 25 5.5E-5 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDG55_07660 5c3f10e8f8c2bff5123f8d7caff559a1 84 SUPERFAMILY SSF54862 4 73 4.89E-17 T 13-10-2018 CDG55_07660 5c3f10e8f8c2bff5123f8d7caff559a1 84 Gene3D G3DSA:3.30.70.20 2 81 6.0E-30 T 13-10-2018 CDG55_15165 a6aebb9a9b2610d9ebf274dbf5747de6 131 SUPERFAMILY SSF54211 9 120 2.78E-24 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_15165 a6aebb9a9b2610d9ebf274dbf5747de6 131 Pfam PF00825 Ribonuclease P 9 114 2.8E-24 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CDG55_15165 a6aebb9a9b2610d9ebf274dbf5747de6 131 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 17 109 5.0E-37 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CDG55_15165 a6aebb9a9b2610d9ebf274dbf5747de6 131 Gene3D G3DSA:3.30.230.10 1 121 2.9E-34 T 13-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CDG55_15165 a6aebb9a9b2610d9ebf274dbf5747de6 131 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 117 15.949 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CDG55_15165 a6aebb9a9b2610d9ebf274dbf5747de6 131 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 10 117 9.7E-21 T 13-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 CDG55_07090 287ed19693dead978ed4c3c3f06dfc9b 234 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 187 2.1E-17 T 13-10-2018 CDG55_07090 287ed19693dead978ed4c3c3f06dfc9b 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 1.1E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_07090 287ed19693dead978ed4c3c3f06dfc9b 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 1.1E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_07090 287ed19693dead978ed4c3c3f06dfc9b 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 1.1E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_07090 287ed19693dead978ed4c3c3f06dfc9b 234 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 1.1E-5 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_07090 287ed19693dead978ed4c3c3f06dfc9b 234 SUPERFAMILY SSF56784 13 214 6.73E-34 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_07090 287ed19693dead978ed4c3c3f06dfc9b 234 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 187 9.8E-12 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_07090 287ed19693dead978ed4c3c3f06dfc9b 234 Gene3D G3DSA:3.40.50.1000 11 193 5.3E-28 T 13-10-2018 IPR023214 HAD superfamily CDG55_11280 00128a20e0eb40b4ee4ce15116e52341 205 SUPERFAMILY SSF56784 1 193 3.53E-44 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_11280 00128a20e0eb40b4ee4ce15116e52341 205 Gene3D G3DSA:3.40.50.1000 3 191 5.8E-78 T 13-10-2018 IPR023214 HAD superfamily CDG55_11280 00128a20e0eb40b4ee4ce15116e52341 205 Gene3D G3DSA:3.90.1470.10 13 128 5.8E-78 T 13-10-2018 CDG55_11280 00128a20e0eb40b4ee4ce15116e52341 205 TIGRFAM TIGR02137 HSK-PSP: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein 1 201 1.4E-96 T 13-10-2018 IPR011863 Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3 CDG55_11280 00128a20e0eb40b4ee4ce15116e52341 205 Pfam PF00702 haloacid dehalogenase-like hydrolase 59 164 1.2E-10 T 13-10-2018 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 PIRSF PIRSF006076 2 837 3.8E-241 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Gene3D G3DSA:3.10.20.310 24 97 4.3E-16 T 13-10-2018 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Gene3D G3DSA:3.10.20.310 273 349 6.2E-14 T 13-10-2018 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 33 837 1.0E-232 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Gene3D G3DSA:3.10.20.310 350 427 9.6E-24 T 13-10-2018 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Gene3D G3DSA:3.10.20.310 98 179 1.1E-15 T 13-10-2018 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Pfam PF01103 Surface antigen 454 837 1.7E-72 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 5 837 23.378 T 13-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Gene3D G3DSA:3.10.20.310 181 272 1.3E-19 T 13-10-2018 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Pfam PF07244 Surface antigen variable number repeat 273 350 6.5E-11 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Pfam PF07244 Surface antigen variable number repeat 353 427 2.4E-15 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Pfam PF07244 Surface antigen variable number repeat 182 269 2.5E-13 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Pfam PF07244 Surface antigen variable number repeat 99 178 2.9E-10 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CDG55_08910 8c191e7fbb3840c55298c3773c74dd23 837 Gene3D G3DSA:2.40.160.50 433 837 5.5E-105 T 13-10-2018 CDG55_11800 9d5d7babe83d186a827dbe041b1e63b1 239 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 231 1.9E-29 T 13-10-2018 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 CDG55_11800 9d5d7babe83d186a827dbe041b1e63b1 239 Gene3D G3DSA:3.20.20.190 1 238 3.0E-53 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CDG55_11800 9d5d7babe83d186a827dbe041b1e63b1 239 SUPERFAMILY SSF51695 1 236 9.0E-50 T 13-10-2018 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily GO:0006629|GO:0008081 CDG55_13810 8dc933dadcdcbd54c063acd1f0ac03e0 631 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 142 592 101.406 T 13-10-2018 IPR037509 Phosphomethylpyrimidine synthase GO:0009228|GO:0016830 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDG55_13810 8dc933dadcdcbd54c063acd1f0ac03e0 631 Gene3D G3DSA:3.20.20.540 211 523 2.1E-157 T 13-10-2018 IPR038521 ThiC/Bza superfamily KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDG55_13810 8dc933dadcdcbd54c063acd1f0ac03e0 631 Pfam PF01964 Radical SAM ThiC family 143 587 3.0E-206 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDG55_13810 8dc933dadcdcbd54c063acd1f0ac03e0 631 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 142 590 1.5E-221 T 13-10-2018 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDG55_13810 8dc933dadcdcbd54c063acd1f0ac03e0 631 Pfam PF13667 ThiC-associated domain 27 102 6.2E-32 T 13-10-2018 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 Gene3D G3DSA:4.10.320.10 104 152 1.8E-13 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 SUPERFAMILY SSF47005 114 150 4.97E-10 T 13-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 Pfam PF02817 e3 binding domain 116 146 2.9E-11 T 13-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 SUPERFAMILY SSF52777 170 397 4.89E-87 T 13-10-2018 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 Pfam PF00364 Biotin-requiring enzyme 4 75 1.7E-18 T 13-10-2018 IPR000089 Biotin/lipoyl attachment CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 4 397 6.0E-179 T 13-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 168 395 1.1E-79 T 13-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 Gene3D G3DSA:2.40.50.100 1 103 1.1E-20 T 13-10-2018 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 Gene3D G3DSA:3.30.559.10 166 398 9.3E-94 T 13-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 CDG55_10885 eade6fbd00c214a10d78c642a6e1ef20 398 SUPERFAMILY SSF51230 1 96 2.22E-24 T 13-10-2018 IPR011053 Single hybrid motif CDG55_02420 718e473dc8c552fc296a18726d86b851 307 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 3 302 36.665 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CDG55_02420 718e473dc8c552fc296a18726d86b851 307 Gene3D G3DSA:3.40.50.150 6 301 6.4E-101 T 13-10-2018 CDG55_02420 718e473dc8c552fc296a18726d86b851 307 SUPERFAMILY SSF53335 3 302 2.05E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_02420 718e473dc8c552fc296a18726d86b851 307 Pfam PF01795 MraW methylase family 2 301 1.4E-105 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CDG55_02420 718e473dc8c552fc296a18726d86b851 307 SUPERFAMILY SSF81799 111 207 7.98E-35 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 CDG55_02420 718e473dc8c552fc296a18726d86b851 307 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 301 2.0E-106 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CDG55_02420 718e473dc8c552fc296a18726d86b851 307 Gene3D G3DSA:1.10.150.170 110 209 6.4E-101 T 13-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 CDG55_02420 718e473dc8c552fc296a18726d86b851 307 PIRSF PIRSF004486 1 303 1.2E-102 T 13-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 Gene3D G3DSA:2.40.110.10 161 281 9.9E-92 T 13-10-2018 CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 9.7E-17 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 584 3.4E-25 T 13-10-2018 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 1.6E-14 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 SUPERFAMILY SSF56645 38 279 6.28E-57 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 450 3.3E-17 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 SUPERFAMILY SSF47203 288 474 4.99E-47 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 Gene3D G3DSA:1.10.540.10 44 160 9.9E-92 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 4 27 1.1E-5 T 13-10-2018 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria CDG55_11840 6c56544526e3ef7fc46d1c84c593fc43 593 Gene3D G3DSA:1.20.140.10 282 451 9.9E-92 T 13-10-2018 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 SUPERFAMILY SSF64484 11 1361 0.0 T 13-10-2018 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Pfam PF04560 RNA polymerase Rpb2, domain 7 1285 1359 4.8E-26 T 13-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1361 12.289 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Pfam PF04565 RNA polymerase Rpb2, domain 3 522 589 3.7E-30 T 13-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:3.90.1100.10 18 159 1.5E-51 T 13-10-2018 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:3.90.1100.10 451 633 4.6E-69 T 13-10-2018 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:2.40.270.10 799 841 4.8E-6 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:3.90.1110.10 160 275 3.7E-28 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:2.40.50.100 723 797 1.3E-31 T 13-10-2018 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Pfam PF00562 RNA polymerase Rpb2, domain 6 726 1283 4.3E-159 T 13-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:3.90.1800.10 1271 1324 7.8E-11 T 13-10-2018 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:3.90.1100.10 654 722 3.9E-21 T 13-10-2018 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:2.40.50.150 842 964 3.5E-44 T 13-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1358 0.0 T 13-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:3.90.1110.10 321 450 2.2E-33 T 13-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Gene3D G3DSA:2.40.270.10 1046 1261 2.5E-86 T 13-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Pfam PF04563 RNA polymerase beta subunit 26 508 3.9E-40 T 13-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Pfam PF04561 RNA polymerase Rpb2, domain 2 350 463 1.4E-14 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Pfam PF04561 RNA polymerase Rpb2, domain 2 153 227 2.3E-6 T 13-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_13660 04b7ddc236776a43f063da370ad2a548 1362 Pfam PF10385 RNA polymerase beta subunit external 1 domain 600 665 1.8E-22 T 13-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 CDG55_08235 feeeb8a761cfc99c6a05205b2f47f2df 305 SUPERFAMILY SSF46785 4 89 4.76E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_08235 feeeb8a761cfc99c6a05205b2f47f2df 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.7E-12 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_08235 feeeb8a761cfc99c6a05205b2f47f2df 305 Gene3D G3DSA:3.40.190.10 93 294 9.1E-56 T 13-10-2018 CDG55_08235 feeeb8a761cfc99c6a05205b2f47f2df 305 SUPERFAMILY SSF53850 90 299 3.43E-41 T 13-10-2018 CDG55_08235 feeeb8a761cfc99c6a05205b2f47f2df 305 Gene3D G3DSA:3.40.190.10 166 267 9.1E-56 T 13-10-2018 CDG55_08235 feeeb8a761cfc99c6a05205b2f47f2df 305 Pfam PF03466 LysR substrate binding domain 89 296 2.8E-41 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_08235 feeeb8a761cfc99c6a05205b2f47f2df 305 Gene3D G3DSA:1.10.10.10 3 92 1.1E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_08675 86c9d463db0323bb2456200779fda1b6 395 Gene3D G3DSA:3.40.640.10 6 258 2.0E-87 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_08675 86c9d463db0323bb2456200779fda1b6 395 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 12 392 1.7E-175 T 13-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 CDG55_08675 86c9d463db0323bb2456200779fda1b6 395 Gene3D G3DSA:3.90.1150.10 261 395 6.8E-52 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_08675 86c9d463db0323bb2456200779fda1b6 395 Hamap MF_02056 O-succinylhomoserine sulfhydrylase [metZ]. 13 393 52.518 T 13-10-2018 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 CDG55_08675 86c9d463db0323bb2456200779fda1b6 395 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 392 8.4E-140 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDG55_08675 86c9d463db0323bb2456200779fda1b6 395 PIRSF PIRSF001434 2 395 9.1E-131 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDG55_08675 86c9d463db0323bb2456200779fda1b6 395 SUPERFAMILY SSF53383 25 393 2.5E-119 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_10060 557a83bd8be0c84513fa9ee773e7a809 242 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 5 238 1.7E-94 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CDG55_10060 557a83bd8be0c84513fa9ee773e7a809 242 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 242 127.335 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CDG55_10060 557a83bd8be0c84513fa9ee773e7a809 242 SUPERFAMILY SSF63892 3 239 5.23E-97 T 13-10-2018 IPR036130 Pyridoxine 5'-phosphate synthase GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CDG55_10060 557a83bd8be0c84513fa9ee773e7a809 242 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 5 237 9.9E-101 T 13-10-2018 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 CDG55_10060 557a83bd8be0c84513fa9ee773e7a809 242 Gene3D G3DSA:3.20.20.70 1 242 2.9E-103 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_12435 8a0bb9b8fe022cc45e3430387b964303 571 Pfam PF02254 TrkA-N domain 431 544 1.5E-17 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDG55_12435 8a0bb9b8fe022cc45e3430387b964303 571 SUPERFAMILY SSF51735 429 560 3.95E-23 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_12435 8a0bb9b8fe022cc45e3430387b964303 571 Pfam PF00999 Sodium/hydrogen exchanger family 13 389 4.7E-73 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CDG55_12435 8a0bb9b8fe022cc45e3430387b964303 571 Gene3D G3DSA:3.40.50.720 425 568 1.8E-26 T 13-10-2018 CDG55_12435 8a0bb9b8fe022cc45e3430387b964303 571 Gene3D G3DSA:1.20.1530.20 4 399 1.3E-77 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 Pfam PF02151 UvrB/uvrC motif 212 241 1.7E-7 T 13-10-2018 IPR001943 UVR domain GO:0005515 CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 SUPERFAMILY SSF82771 19 102 5.49E-23 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 SUPERFAMILY SSF46600 193 246 9.68E-13 T 13-10-2018 IPR036876 UVR domain superfamily CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 SMART SM00465 19 100 2.0E-22 T 13-10-2018 IPR000305 GIY-YIG endonuclease CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 Hamap MF_00203 UvrABC system protein C [uvrC]. 6 596 26.477 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 389 531 1.6E-47 T 13-10-2018 IPR001162 UvrC family homology region CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 SUPERFAMILY SSF47781 510 598 3.81E-23 T 13-10-2018 IPR010994 RuvA domain 2-like CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 SMART SM00278 577 596 8.5 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 SMART SM00278 545 564 86.0 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 Gene3D G3DSA:3.40.1440.10 5 104 5.9E-31 T 13-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 Gene3D G3DSA:1.10.150.20 544 598 1.4E-18 T 13-10-2018 CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 Gene3D G3DSA:3.30.420.340 376 541 6.1E-52 T 13-10-2018 IPR038476 UvrC homology region 2 superfamily CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 Pfam PF01541 GIY-YIG catalytic domain 21 95 2.4E-8 T 13-10-2018 IPR000305 GIY-YIG endonuclease CDG55_13560 ee2df8bdf83aa02f82262b461126e0f8 599 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 578 6.8E-177 T 13-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 CDG55_07300 383dffb0a2774557a68b2aeebf49af05 301 Gene3D G3DSA:1.25.40.10 156 292 6.9E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_07300 383dffb0a2774557a68b2aeebf49af05 301 SUPERFAMILY SSF48452 196 280 4.7E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 PIRSF PIRSF006092 1 158 6.3E-53 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 Gene3D G3DSA:3.10.50.30 76 158 1.3E-32 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 Gene3D G3DSA:1.10.287.180 1 75 1.3E-29 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 157 4.1E-30 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 SUPERFAMILY SSF46557 3 77 8.24E-27 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 SUPERFAMILY SSF54534 82 157 3.14E-25 T 13-10-2018 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 73 3.4E-30 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 4.1E-58 T 13-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 CDG55_10825 d5f7c244546ebd0fcb76dfe5ada2f3d8 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 32.441 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 CDG55_13820 d9d358904a6a22956807bb4f005a585f 271 Gene3D G3DSA:3.60.21.10 2 268 9.0E-62 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CDG55_13820 d9d358904a6a22956807bb4f005a585f 271 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 13 256 34.53 T 13-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 CDG55_13820 d9d358904a6a22956807bb4f005a585f 271 SUPERFAMILY SSF56300 15 260 9.5E-54 T 13-10-2018 CDG55_13820 d9d358904a6a22956807bb4f005a585f 271 Pfam PF00149 Calcineurin-like phosphoesterase 14 202 3.0E-14 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CDG55_13820 d9d358904a6a22956807bb4f005a585f 271 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 208 256 9.0E-12 T 13-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 CDG55_11180 1ee38569982cdb99e8554d01978843b4 305 SUPERFAMILY SSF52151 36 287 3.66E-56 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CDG55_11180 1ee38569982cdb99e8554d01978843b4 305 Gene3D G3DSA:3.40.1090.10 25 134 3.6E-25 T 13-10-2018 CDG55_11180 1ee38569982cdb99e8554d01978843b4 305 Gene3D G3DSA:3.40.1090.10 135 252 1.0E-14 T 13-10-2018 CDG55_11180 1ee38569982cdb99e8554d01978843b4 305 Pfam PF01734 Patatin-like phospholipase 41 198 7.5E-23 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 CDG55_08845 69a66adc040dcaef227a4891acbe4951 594 Pfam PF04183 IucA / IucC family 144 377 1.1E-52 T 13-10-2018 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0019290 CDG55_08845 69a66adc040dcaef227a4891acbe4951 594 Gene3D G3DSA:1.10.510.40 395 580 7.6E-15 T 13-10-2018 CDG55_08845 69a66adc040dcaef227a4891acbe4951 594 Pfam PF06276 Ferric iron reductase FhuF-like transporter 408 567 3.2E-34 T 13-10-2018 IPR022770 Ferric iron reductase FhuF domain CDG55_07210 39daafb8ba29d81fb7157a5839726cdb 379 Gene3D G3DSA:3.30.1360.100 299 379 3.9E-7 T 13-10-2018 CDG55_07210 39daafb8ba29d81fb7157a5839726cdb 379 SUPERFAMILY SSF53067 1 133 1.17E-15 T 13-10-2018 CDG55_07210 39daafb8ba29d81fb7157a5839726cdb 379 Gene3D G3DSA:3.30.420.380 27 219 4.8E-16 T 13-10-2018 CDG55_07210 39daafb8ba29d81fb7157a5839726cdb 379 Pfam PF12693 GspL periplasmic domain 232 368 4.7E-13 T 13-10-2018 IPR025691 GspL periplasmic domain CDG55_07210 39daafb8ba29d81fb7157a5839726cdb 379 Pfam PF05134 Type II secretion system (T2SS), protein L 40 193 1.4E-11 T 13-10-2018 IPR024230 GspL, cytoplasmic actin-ATPase-like domain CDG55_07210 39daafb8ba29d81fb7157a5839726cdb 379 Gene3D G3DSA:3.30.420.370 131 202 4.8E-16 T 13-10-2018 CDG55_07210 39daafb8ba29d81fb7157a5839726cdb 379 PIRSF PIRSF015761 8 379 2.3E-20 T 13-10-2018 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 CDG55_03725 3916214f51ae7827d8382075ab8f8ab1 484 PIRSF PIRSF000204 4 481 1.3E-189 T 13-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 CDG55_03725 3916214f51ae7827d8382075ab8f8ab1 484 Pfam PF02233 NAD(P) transhydrogenase beta subunit 10 477 9.0E-182 T 13-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CDG55_03725 3916214f51ae7827d8382075ab8f8ab1 484 Gene3D G3DSA:3.40.50.1220 301 480 5.1E-82 T 13-10-2018 CDG55_03725 3916214f51ae7827d8382075ab8f8ab1 484 SUPERFAMILY SSF52467 308 480 8.18E-74 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CDG55_12850 47d2747ce2751d14013856815b232727 321 Gene3D G3DSA:3.40.50.1170 1 203 1.2E-35 T 13-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 CDG55_12850 47d2747ce2751d14013856815b232727 321 SMART SM00870 3 315 9.3E-18 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CDG55_12850 47d2747ce2751d14013856815b232727 321 SUPERFAMILY SSF53774 1 320 1.96E-57 T 13-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 CDG55_12850 47d2747ce2751d14013856815b232727 321 PIRSF PIRSF500176 1 304 4.2E-38 T 13-10-2018 CDG55_12850 47d2747ce2751d14013856815b232727 321 Pfam PF00710 Asparaginase, N-terminal 3 188 5.1E-32 T 13-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 CDG55_12850 47d2747ce2751d14013856815b232727 321 Gene3D G3DSA:3.40.50.40 204 319 1.7E-9 T 13-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 CDG55_12850 47d2747ce2751d14013856815b232727 321 PIRSF PIRSF001220 1 313 7.4E-31 T 13-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 CDG55_12710 d529556529d401e22fa49a98f414faeb 329 Gene3D G3DSA:1.10.8.60 144 209 5.6E-10 T 13-10-2018 CDG55_12710 d529556529d401e22fa49a98f414faeb 329 Gene3D G3DSA:3.40.50.300 6 134 5.0E-23 T 13-10-2018 CDG55_12710 d529556529d401e22fa49a98f414faeb 329 Gene3D G3DSA:1.20.272.10 210 328 8.5E-18 T 13-10-2018 CDG55_12710 d529556529d401e22fa49a98f414faeb 329 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 20 319 1.6E-41 T 13-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 CDG55_12710 d529556529d401e22fa49a98f414faeb 329 Pfam PF06144 DNA polymerase III, delta subunit 20 181 4.2E-15 T 13-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 CDG55_12710 d529556529d401e22fa49a98f414faeb 329 SUPERFAMILY SSF52540 7 206 1.28E-24 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_12710 d529556529d401e22fa49a98f414faeb 329 SUPERFAMILY SSF48019 208 325 9.52E-22 T 13-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 CDG55_08600 41aa3e2930a7995c06cf1e81ea77c1e7 102 Pfam PF01381 Helix-turn-helix 35 83 7.1E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_08600 41aa3e2930a7995c06cf1e81ea77c1e7 102 Gene3D G3DSA:1.10.260.40 24 99 4.6E-8 T 13-10-2018 CDG55_08600 41aa3e2930a7995c06cf1e81ea77c1e7 102 SUPERFAMILY SSF47413 26 86 1.29E-8 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_02730 d12cd52232885b57678d5fa669e8f69f 182 SUPERFAMILY SSF50447 10 98 2.05E-22 T 13-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily CDG55_02730 d12cd52232885b57678d5fa669e8f69f 182 Pfam PF01782 RimM N-terminal domain 13 95 2.5E-23 T 13-10-2018 IPR002676 RimM, N-terminal GO:0006364 CDG55_02730 d12cd52232885b57678d5fa669e8f69f 182 Gene3D G3DSA:2.30.30.240 99 182 1.7E-32 T 13-10-2018 CDG55_02730 d12cd52232885b57678d5fa669e8f69f 182 SUPERFAMILY SSF50346 104 179 2.35E-18 T 13-10-2018 IPR011033 PRC-barrel-like superfamily CDG55_02730 d12cd52232885b57678d5fa669e8f69f 182 Gene3D G3DSA:2.40.30.60 1 98 2.0E-36 T 13-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 CDG55_02730 d12cd52232885b57678d5fa669e8f69f 182 Pfam PF05239 PRC-barrel domain 102 177 1.5E-7 T 13-10-2018 IPR027275 PRC-barrel domain CDG55_02730 d12cd52232885b57678d5fa669e8f69f 182 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 12 179 1.2E-45 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CDG55_02730 d12cd52232885b57678d5fa669e8f69f 182 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 11 182 22.849 T 13-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 CDG55_00930 7469dbfc93a9c30271ac73cec76e441b 226 Gene3D G3DSA:1.20.1260.10 75 168 2.4E-21 T 13-10-2018 IPR012347 Ferritin-like CDG55_00930 7469dbfc93a9c30271ac73cec76e441b 226 Gene3D G3DSA:1.20.1260.10 169 226 1.4E-21 T 13-10-2018 IPR012347 Ferritin-like CDG55_00930 7469dbfc93a9c30271ac73cec76e441b 226 Pfam PF03713 Domain of unknown function (DUF305) 78 222 1.9E-41 T 13-10-2018 IPR005183 Domain of unknown function DUF305 CDG55_13205 6125a905b0fcd157d314983fac21b1b0 291 Pfam PF01430 Hsp33 protein 5 278 1.4E-71 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CDG55_13205 6125a905b0fcd157d314983fac21b1b0 291 PIRSF PIRSF005261 1 289 1.0E-63 T 13-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 CDG55_13205 6125a905b0fcd157d314983fac21b1b0 291 SUPERFAMILY SSF118352 231 287 5.1E-15 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CDG55_13205 6125a905b0fcd157d314983fac21b1b0 291 SUPERFAMILY SSF64397 3 237 2.75E-60 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CDG55_13205 6125a905b0fcd157d314983fac21b1b0 291 Gene3D G3DSA:1.10.287.480 183 230 1.3E-17 T 13-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily CDG55_13205 6125a905b0fcd157d314983fac21b1b0 291 Gene3D G3DSA:3.90.1280.10 231 288 1.0E-17 T 13-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 CDG55_13205 6125a905b0fcd157d314983fac21b1b0 291 Gene3D G3DSA:3.55.30.10 1 175 3.6E-50 T 13-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 CDG55_12125 041069cb3f22dcd0b48a7523dfd649ce 322 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 29 316 3.7E-101 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 CDG55_12125 041069cb3f22dcd0b48a7523dfd649ce 322 Gene3D G3DSA:3.40.718.10 1 322 9.9E-116 T 13-10-2018 CDG55_12125 041069cb3f22dcd0b48a7523dfd649ce 322 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 4 320 2.2E-118 T 13-10-2018 IPR005255 PdxA family GO:0051287|GO:0055114 KEGG: 00750+1.1.1.262 CDG55_12125 041069cb3f22dcd0b48a7523dfd649ce 322 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 1 321 32.704 T 13-10-2018 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase GO:0042823|GO:0050570 KEGG: 00750+1.1.1.262 CDG55_12125 041069cb3f22dcd0b48a7523dfd649ce 322 SUPERFAMILY SSF53659 4 321 3.24E-100 T 13-10-2018 CDG55_01895 dd695b66028440dbd024d17cf0a6b20e 350 SUPERFAMILY SSF51395 3 349 2.46E-111 T 13-10-2018 CDG55_01895 dd695b66028440dbd024d17cf0a6b20e 350 Gene3D G3DSA:3.20.20.70 1 350 3.3E-131 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_01895 dd695b66028440dbd024d17cf0a6b20e 350 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 328 7.5E-81 T 13-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 CDG55_11725 93a9f119a1e72e31cdce15c61d5afeef 176 SUPERFAMILY SSF52799 20 146 7.07E-26 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CDG55_11725 93a9f119a1e72e31cdce15c61d5afeef 176 Pfam PF00782 Dual specificity phosphatase, catalytic domain 36 142 1.3E-13 T 13-10-2018 IPR000340 Dual specificity phosphatase, catalytic domain GO:0008138|GO:0016311 CDG55_11725 93a9f119a1e72e31cdce15c61d5afeef 176 Gene3D G3DSA:3.90.190.10 10 173 1.3E-36 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CDG55_05605 9afc50c311faa76367e272c1e109e139 482 Pfam PF05235 CHAD domain 229 438 6.5E-32 T 13-10-2018 IPR007899 CHAD domain CDG55_05605 9afc50c311faa76367e272c1e109e139 482 Pfam PF01928 CYTH domain 2 193 6.2E-19 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 CDG55_05605 9afc50c311faa76367e272c1e109e139 482 SMART SM01118 1 201 9.8E-27 T 13-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 CDG55_05605 9afc50c311faa76367e272c1e109e139 482 SMART SM00880 227 474 1.6E-40 T 13-10-2018 IPR007899 CHAD domain CDG55_05605 9afc50c311faa76367e272c1e109e139 482 Gene3D G3DSA:1.40.20.10 206 479 1.7E-38 T 13-10-2018 IPR038186 CHAD domain superfamily CDG55_05605 9afc50c311faa76367e272c1e109e139 482 SUPERFAMILY SSF55154 1 211 5.23E-37 T 13-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 CDG55_05605 9afc50c311faa76367e272c1e109e139 482 Gene3D G3DSA:2.40.320.10 1 196 1.3E-33 T 13-10-2018 CDG55_08230 13b3aebe71cd308fd47093609785150f 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 165 177 5.8E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_08230 13b3aebe71cd308fd47093609785150f 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 95 111 5.8E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_08230 13b3aebe71cd308fd47093609785150f 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 196 208 5.8E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_08230 13b3aebe71cd308fd47093609785150f 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 72 85 5.8E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_08230 13b3aebe71cd308fd47093609785150f 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 7 252 1.9E-98 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_08230 13b3aebe71cd308fd47093609785150f 264 Hamap MF_01974 Methionine aminopeptidase [map]. 6 254 40.939 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_08230 13b3aebe71cd308fd47093609785150f 264 SUPERFAMILY SSF55920 7 257 5.76E-92 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CDG55_08230 13b3aebe71cd308fd47093609785150f 264 Pfam PF00557 Metallopeptidase family M24 15 245 7.5E-54 T 13-10-2018 IPR000994 Peptidase M24 CDG55_08230 13b3aebe71cd308fd47093609785150f 264 Gene3D G3DSA:3.90.230.10 4 256 2.0E-106 T 13-10-2018 CDG55_10915 0543a9d34034043cf19f47f8fd884d05 133 Gene3D G3DSA:1.20.1300.10 2 132 2.0E-31 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10915 0543a9d34034043cf19f47f8fd884d05 133 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 6 126 7.1E-23 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10915 0543a9d34034043cf19f47f8fd884d05 133 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 23 130 1.8E-29 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10915 0543a9d34034043cf19f47f8fd884d05 133 PIRSF PIRSF000178 2 132 5.4E-21 T 13-10-2018 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10915 0543a9d34034043cf19f47f8fd884d05 133 SUPERFAMILY SSF81343 6 131 2.83E-23 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 Gene3D G3DSA:3.40.50.10750 527 680 1.8E-128 T 13-10-2018 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 SUPERFAMILY SSF52540 1 159 1.01E-13 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 Pfam PF07085 DRTGG domain 233 344 2.3E-20 T 13-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 Gene3D G3DSA:3.40.1390.20 223 366 6.5E-11 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 SUPERFAMILY SSF75138 230 353 3.65E-16 T 13-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 Gene3D G3DSA:3.40.50.300 3 173 3.7E-11 T 13-10-2018 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 SUPERFAMILY SSF53659 393 709 2.11E-88 T 13-10-2018 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 PIRSF PIRSF006107 1 711 0.0 T 13-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 Pfam PF13500 AAA domain 3 226 8.1E-24 T 13-10-2018 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 405 704 4.8E-126 T 13-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 Pfam PF01515 Phosphate acetyl/butaryl transferase 390 704 1.4E-116 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDG55_03460 a5ddf96981d4229b0e95424466a2cbe7 711 Gene3D G3DSA:3.40.50.10950 398 707 1.8E-128 T 13-10-2018 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 PIRSF PIRSF000774 1 481 1.4E-144 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 11 479 5.7E-153 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 Pfam PF04963 Sigma-54 factor, core binding domain 111 308 9.7E-54 T 13-10-2018 IPR007046 RNA polymerase sigma factor 54, core-binding domain GO:0003677|GO:0006352 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 Gene3D G3DSA:1.10.10.60 422 480 1.1E-25 T 13-10-2018 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 PRINTS PR00045 Sigma-54 factor signature 192 209 7.5E-32 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 PRINTS PR00045 Sigma-54 factor signature 381 393 7.5E-32 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 PRINTS PR00045 Sigma-54 factor signature 455 473 7.5E-32 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 PRINTS PR00045 Sigma-54 factor signature 397 408 7.5E-32 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 7 48 6.8E-14 T 13-10-2018 IPR000394 RNA polymerase sigma factor 54 GO:0001216|GO:0016987 CDG55_04055 a43072c50027021b9cf0a715474c3484 482 Gene3D G3DSA:1.10.10.1330 115 260 1.2E-19 T 13-10-2018 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily CDG55_04055 a43072c50027021b9cf0a715474c3484 482 Pfam PF04552 Sigma-54, DNA binding domain 323 479 1.7E-69 T 13-10-2018 IPR007634 RNA polymerase sigma factor 54, DNA-binding CDG55_14060 784329e33918919f8e5fca9d6089e086 253 Gene3D G3DSA:3.20.20.80 33 246 4.5E-68 T 13-10-2018 CDG55_14060 784329e33918919f8e5fca9d6089e086 253 Pfam PF01183 Glycosyl hydrolases family 25 51 224 6.3E-45 T 13-10-2018 IPR002053 Glycoside hydrolase, family 25 GO:0003796|GO:0009253|GO:0016998 CDG55_14060 784329e33918919f8e5fca9d6089e086 253 SMART SM00641 47 152 1.1E-10 T 13-10-2018 IPR018077 Glycoside hydrolase, family 25 subgroup CDG55_14060 784329e33918919f8e5fca9d6089e086 253 SUPERFAMILY SSF51445 44 246 1.12E-57 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CDG55_10135 cf353a37957a58557aa62e49de8214b5 200 SUPERFAMILY SSF53474 4 179 7.94E-31 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_10135 cf353a37957a58557aa62e49de8214b5 200 Gene3D G3DSA:3.40.50.1820 2 182 9.5E-47 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_10135 cf353a37957a58557aa62e49de8214b5 200 Pfam PF06821 Serine hydrolase 4 177 5.3E-51 T 13-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 CDG55_12380 350d87d4f348efe649b930b3950c4d22 169 PIRSF PIRSF000194 3 169 9.7E-54 T 13-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 CDG55_12380 350d87d4f348efe649b930b3950c4d22 169 Gene3D G3DSA:3.40.430.10 6 169 6.4E-51 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CDG55_12380 350d87d4f348efe649b930b3950c4d22 169 SUPERFAMILY SSF53597 8 169 2.66E-49 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CDG55_12380 350d87d4f348efe649b930b3950c4d22 169 PRINTS PR00070 Dihydrofolate reductase signature 46 57 1.7E-14 T 13-10-2018 CDG55_12380 350d87d4f348efe649b930b3950c4d22 169 PRINTS PR00070 Dihydrofolate reductase signature 33 41 1.7E-14 T 13-10-2018 CDG55_12380 350d87d4f348efe649b930b3950c4d22 169 PRINTS PR00070 Dihydrofolate reductase signature 19 29 1.7E-14 T 13-10-2018 CDG55_12380 350d87d4f348efe649b930b3950c4d22 169 PRINTS PR00070 Dihydrofolate reductase signature 103 117 1.7E-14 T 13-10-2018 CDG55_12380 350d87d4f348efe649b930b3950c4d22 169 Pfam PF00186 Dihydrofolate reductase 8 169 1.2E-54 T 13-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 218 353 2.7E-21 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 SMART SM00175 217 377 0.0093 T 13-10-2018 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 Gene3D G3DSA:3.40.50.300 217 379 5.4E-103 T 13-10-2018 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 SUPERFAMILY SSF52540 72 370 1.86E-44 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 SUPERFAMILY SSF116878 121 451 1.96E-49 T 13-10-2018 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 Pfam PF01926 50S ribosome-binding GTPase 218 313 8.4E-24 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 Pfam PF12631 MnmE helical domain 123 448 1.5E-56 T 13-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 451 6.1E-106 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 Gene3D G3DSA:1.20.120.430 122 451 5.4E-103 T 13-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 120 6.1E-36 T 13-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 5 451 32.438 T 13-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 Gene3D G3DSA:3.30.1360.120 1 121 3.5E-40 T 13-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 219 239 1.0E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_15150 b53654c2b231e56a083e7d5a9cdc6e71 451 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 286 304 1.0E-5 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_11230 129ddc4cdad48d74e9e32d651041a1a6 470 Pfam PF00120 Glutamine synthetase, catalytic domain 148 465 1.4E-83 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDG55_11230 129ddc4cdad48d74e9e32d651041a1a6 470 SMART SM01230 146 391 5.8E-71 T 13-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 CDG55_11230 129ddc4cdad48d74e9e32d651041a1a6 470 SUPERFAMILY SSF55931 148 467 1.67E-83 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDG55_11230 129ddc4cdad48d74e9e32d651041a1a6 470 Gene3D G3DSA:3.30.590.10 149 468 8.1E-86 T 13-10-2018 CDG55_10365 6700bc6fd3f8c8714e18be29e6ef2c29 808 Pfam PF03772 Competence protein 242 522 5.2E-58 T 13-10-2018 IPR004477 ComEC/Rec2-related protein CDG55_10365 6700bc6fd3f8c8714e18be29e6ef2c29 808 Gene3D G3DSA:3.60.15.10 548 799 1.1E-55 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_10365 6700bc6fd3f8c8714e18be29e6ef2c29 808 SUPERFAMILY SSF56281 549 801 2.29E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_10365 6700bc6fd3f8c8714e18be29e6ef2c29 808 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 263 454 3.6E-21 T 13-10-2018 IPR004477 ComEC/Rec2-related protein CDG55_10365 6700bc6fd3f8c8714e18be29e6ef2c29 808 SMART SM00849 556 753 4.8E-4 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_10365 6700bc6fd3f8c8714e18be29e6ef2c29 808 Pfam PF00753 Metallo-beta-lactamase superfamily 553 627 8.5E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_10365 6700bc6fd3f8c8714e18be29e6ef2c29 808 Pfam PF13567 Domain of unknown function (DUF4131) 23 187 3.3E-11 T 13-10-2018 IPR025405 Domain of unknown function DUF4131 CDG55_10365 6700bc6fd3f8c8714e18be29e6ef2c29 808 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 86 781 6.1E-94 T 13-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 CDG55_11520 f86a6d346e465f7e986b4d360eca4023 111 Pfam PF09406 Protein of unknown function (DUF2004) 11 111 9.9E-14 T 13-10-2018 IPR018546 Protein of unknown function DUF2004 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 Pfam PF05191 Adenylate kinase, active site lid 123 158 3.7E-16 T 13-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 TIGRFAM TIGR01351 adk: adenylate kinase 2 211 6.8E-73 T 13-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 SUPERFAMILY SSF52540 1 188 5.23E-46 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 Pfam PF00406 Adenylate kinase 5 185 9.2E-54 T 13-10-2018 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 PRINTS PR00094 Adenylate kinase signature 156 171 4.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 PRINTS PR00094 Adenylate kinase signature 32 46 4.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 PRINTS PR00094 Adenylate kinase signature 81 97 4.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 PRINTS PR00094 Adenylate kinase signature 173 187 4.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 PRINTS PR00094 Adenylate kinase signature 4 17 4.7E-32 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 Gene3D G3DSA:3.40.50.300 1 217 2.8E-79 T 13-10-2018 CDG55_05755 95d9660d2e12f2af2b66e8de210faec4 217 Hamap MF_00235 Adenylate kinase [adk]. 1 216 50.669 T 13-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 SUPERFAMILY SSF51735 222 457 4.87E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 350 358 1.9E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 370 389 1.9E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 297 308 1.9E-7 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 226 400 1.0E-5 T 13-10-2018 CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 232 456 6.6E-46 T 13-10-2018 CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 Gene3D G3DSA:3.40.50.720 24 219 1.4E-56 T 13-10-2018 CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 Gene3D G3DSA:3.40.50.720 221 462 2.4E-60 T 13-10-2018 CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 344 360 5.4E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 227 244 5.4E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 297 308 5.4E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 370 389 5.4E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 390 407 5.4E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_07135 98b0e66e80a5669d7f4374320b518a39 463 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 423 443 5.4E-33 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04700 2c882712ec86a17a75bf6f1c4217815a 264 Pfam PF02616 Segregation and condensation protein ScpA 53 145 7.8E-14 T 13-10-2018 IPR003768 Segregation and condensation protein A CDG55_04700 2c882712ec86a17a75bf6f1c4217815a 264 Pfam PF02616 Segregation and condensation protein ScpA 184 260 9.1E-7 T 13-10-2018 IPR003768 Segregation and condensation protein A CDG55_04355 46c1dd35c7413479c54d7ebff64fa807 180 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 5 152 27.771 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04355 46c1dd35c7413479c54d7ebff64fa807 180 Gene3D G3DSA:3.30.70.3270 31 175 1.3E-41 T 13-10-2018 CDG55_04355 46c1dd35c7413479c54d7ebff64fa807 180 Pfam PF12838 4Fe-4S dicluster domain 59 113 7.8E-12 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDG55_04355 46c1dd35c7413479c54d7ebff64fa807 180 SUPERFAMILY SSF54862 40 160 7.53E-28 T 13-10-2018 CDG55_04355 46c1dd35c7413479c54d7ebff64fa807 180 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 14 137 3.9E-48 T 13-10-2018 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_05680 fb5ea6bbd5cd53af2b645849a1b9cc35 233 Gene3D G3DSA:3.30.110.170 35 225 2.3E-18 T 13-10-2018 CDG55_05680 fb5ea6bbd5cd53af2b645849a1b9cc35 233 Pfam PF04402 Protein of unknown function (DUF541) 33 228 2.2E-24 T 13-10-2018 IPR007497 Protein of unknown function DUF541 CDG55_05680 fb5ea6bbd5cd53af2b645849a1b9cc35 233 Gene3D G3DSA:3.30.70.2970 44 146 2.3E-18 T 13-10-2018 CDG55_11285 9a46a2828ab851ddf055e754d0262bd5 244 PIRSF PIRSF000857 5 244 2.0E-77 T 13-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 CDG55_11285 9a46a2828ab851ddf055e754d0262bd5 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 213 8.1E-47 T 13-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 CDG55_11285 9a46a2828ab851ddf055e754d0262bd5 244 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 42 237 3.4E-78 T 13-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 CDG55_11285 9a46a2828ab851ddf055e754d0262bd5 244 SUPERFAMILY SSF52402 13 201 2.51E-46 T 13-10-2018 CDG55_11285 9a46a2828ab851ddf055e754d0262bd5 244 Gene3D G3DSA:3.40.50.620 9 228 1.3E-66 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_07810 ad7028fa777e58c2ce28dc9ef5a8743a 259 Pfam PF00970 Oxidoreductase FAD-binding domain 15 99 3.2E-10 T 13-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 CDG55_07810 ad7028fa777e58c2ce28dc9ef5a8743a 259 Gene3D G3DSA:3.40.50.80 100 255 1.7E-37 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_07810 ad7028fa777e58c2ce28dc9ef5a8743a 259 Gene3D G3DSA:2.40.30.10 1 96 1.2E-28 T 13-10-2018 CDG55_07810 ad7028fa777e58c2ce28dc9ef5a8743a 259 SUPERFAMILY SSF52343 102 257 1.57E-36 T 13-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CDG55_07810 ad7028fa777e58c2ce28dc9ef5a8743a 259 SUPERFAMILY SSF63380 7 99 4.84E-25 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_07810 ad7028fa777e58c2ce28dc9ef5a8743a 259 Pfam PF00175 Oxidoreductase NAD-binding domain 112 230 7.9E-8 T 13-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 CDG55_12500 86d71e47645ec0aa0e65ae3c9759bfb1 895 Gene3D G3DSA:3.40.50.300 269 455 3.4E-9 T 13-10-2018 CDG55_12500 86d71e47645ec0aa0e65ae3c9759bfb1 895 Pfam PF04851 Type III restriction enzyme, res subunit 7 249 5.4E-16 T 13-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 CDG55_12500 86d71e47645ec0aa0e65ae3c9759bfb1 895 SUPERFAMILY SSF52540 56 423 6.39E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09085 0062d95f403c0076189ec3d0a18bc72c 450 SUPERFAMILY SSF103473 18 430 5.89E-54 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_09085 0062d95f403c0076189ec3d0a18bc72c 450 Gene3D G3DSA:1.20.1250.20 16 208 6.9E-40 T 13-10-2018 CDG55_09085 0062d95f403c0076189ec3d0a18bc72c 450 Pfam PF07690 Major Facilitator Superfamily 30 389 1.4E-25 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_09085 0062d95f403c0076189ec3d0a18bc72c 450 Gene3D G3DSA:1.20.1250.20 229 437 4.2E-31 T 13-10-2018 CDG55_04660 4899ea75151d0bb2ca136a8fa5f4c7b5 594 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 76 508 2.3E-76 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CDG55_04660 4899ea75151d0bb2ca136a8fa5f4c7b5 594 SUPERFAMILY SSF53850 27 588 1.99E-90 T 13-10-2018 CDG55_04660 4899ea75151d0bb2ca136a8fa5f4c7b5 594 Gene3D G3DSA:3.40.190.10 217 336 1.4E-20 T 13-10-2018 CDG55_04660 4899ea75151d0bb2ca136a8fa5f4c7b5 594 Gene3D G3DSA:3.90.76.10 42 216 5.9E-34 T 13-10-2018 CDG55_04660 4899ea75151d0bb2ca136a8fa5f4c7b5 594 PIRSF PIRSF002741 3 592 2.4E-57 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDG55_04660 4899ea75151d0bb2ca136a8fa5f4c7b5 594 Gene3D G3DSA:3.10.105.10 337 557 2.2E-32 T 13-10-2018 CDG55_05390 2360fd54acae764442bb312fe1150f70 252 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 5.3E-21 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDG55_05390 2360fd54acae764442bb312fe1150f70 252 Gene3D G3DSA:1.10.10.10 1 54 8.7E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_05390 2360fd54acae764442bb312fe1150f70 252 Pfam PF00455 DeoR C terminal sensor domain 75 231 5.8E-48 T 13-10-2018 IPR014036 DeoR C-terminal sensor domain CDG55_05390 2360fd54acae764442bb312fe1150f70 252 SUPERFAMILY SSF100950 74 233 8.37E-26 T 13-10-2018 IPR037171 NagB/RpiA transferase-like CDG55_05390 2360fd54acae764442bb312fe1150f70 252 SMART SM00420 6 58 4.9E-23 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDG55_05390 2360fd54acae764442bb312fe1150f70 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.5E-13 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDG55_05390 2360fd54acae764442bb312fe1150f70 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.5E-13 T 13-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 CDG55_05390 2360fd54acae764442bb312fe1150f70 252 SUPERFAMILY SSF46785 6 68 3.67E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_05390 2360fd54acae764442bb312fe1150f70 252 SMART SM01134 72 232 4.6E-60 T 13-10-2018 CDG55_09230 9be89e98f58bf8c8df73488b41cd8f8b 908 Pfam PF17243 POTRA domain TamA domain 1 245 313 5.1E-10 T 13-10-2018 IPR035243 TamA, POTRA domain 1 CDG55_09230 9be89e98f58bf8c8df73488b41cd8f8b 908 Gene3D G3DSA:3.10.20.310 315 402 1.1E-16 T 13-10-2018 CDG55_09230 9be89e98f58bf8c8df73488b41cd8f8b 908 Gene3D G3DSA:2.40.160.50 575 908 1.1E-91 T 13-10-2018 CDG55_09230 9be89e98f58bf8c8df73488b41cd8f8b 908 Pfam PF01103 Surface antigen 711 906 1.9E-34 T 13-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 CDG55_09230 9be89e98f58bf8c8df73488b41cd8f8b 908 Pfam PF07244 Surface antigen variable number repeat 322 397 1.9E-5 T 13-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 CDG55_09230 9be89e98f58bf8c8df73488b41cd8f8b 908 Gene3D G3DSA:3.10.20.310 403 480 8.3E-6 T 13-10-2018 CDG55_03225 d62d98601d5b7b74164ddb0d4040b590 128 SUPERFAMILY SSF53137 15 128 5.89E-47 T 13-10-2018 CDG55_03225 d62d98601d5b7b74164ddb0d4040b590 128 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 9 125 3.1E-54 T 13-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03225 d62d98601d5b7b74164ddb0d4040b590 128 Pfam PF00411 Ribosomal protein S11 18 127 3.5E-50 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CDG55_03225 d62d98601d5b7b74164ddb0d4040b590 128 Gene3D G3DSA:3.30.420.80 1 128 5.2E-54 T 13-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_03225 d62d98601d5b7b74164ddb0d4040b590 128 PIRSF PIRSF002131 1 128 1.1E-51 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CDG55_03225 d62d98601d5b7b74164ddb0d4040b590 128 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 128 32.395 T 13-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 CDG55_12980 948283bf49720f8ac14b8d6f49ef9d36 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 75 176 4.0E-11 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_12980 948283bf49720f8ac14b8d6f49ef9d36 224 Gene3D G3DSA:1.10.150.240 20 83 5.8E-50 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CDG55_12980 948283bf49720f8ac14b8d6f49ef9d36 224 SUPERFAMILY SSF56784 3 216 6.3E-56 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_12980 948283bf49720f8ac14b8d6f49ef9d36 224 Gene3D G3DSA:3.40.50.1000 8 204 5.8E-50 T 13-10-2018 IPR023214 HAD superfamily CDG55_12980 948283bf49720f8ac14b8d6f49ef9d36 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 183 1.0E-32 T 13-10-2018 CDG55_04835 5b765913179e6c94f7d7d90a910dbaf6 359 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 7 252 36.215 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD CDG55_04835 5b765913179e6c94f7d7d90a910dbaf6 359 SUPERFAMILY SSF48452 43 128 3.08E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_04835 5b765913179e6c94f7d7d90a910dbaf6 359 Pfam PF13525 Outer membrane lipoprotein 39 242 1.1E-60 T 13-10-2018 IPR039565 Outer membrane lipoprotein BamD-like CDG55_04835 5b765913179e6c94f7d7d90a910dbaf6 359 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 10 254 1.0E-76 T 13-10-2018 IPR017689 Outer membrane protein assembly factor BamD CDG55_04835 5b765913179e6c94f7d7d90a910dbaf6 359 Gene3D G3DSA:1.25.40.10 40 261 2.0E-49 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_11645 45d2b63e75c4595b028e0caf330a0661 337 SUPERFAMILY SSF46689 283 331 2.28E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_11645 45d2b63e75c4595b028e0caf330a0661 337 SMART SM00342 248 330 2.2E-23 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_11645 45d2b63e75c4595b028e0caf330a0661 337 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 204 6.9E-48 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_11645 45d2b63e75c4595b028e0caf330a0661 337 Pfam PF12833 Helix-turn-helix domain 255 331 3.5E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_11645 45d2b63e75c4595b028e0caf330a0661 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 1.8E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_11645 45d2b63e75c4595b028e0caf330a0661 337 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 1.8E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_11645 45d2b63e75c4595b028e0caf330a0661 337 Gene3D G3DSA:1.10.10.60 227 336 1.6E-25 T 13-10-2018 CDG55_01625 9cb3dcc32e8e3a077cdb6ca64267b6cb 525 SUPERFAMILY SSF55931 16 522 2.75E-178 T 13-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 CDG55_01625 9cb3dcc32e8e3a077cdb6ca64267b6cb 525 Pfam PF04262 Glutamate-cysteine ligase 18 388 2.3E-148 T 13-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CDG55_01625 9cb3dcc32e8e3a077cdb6ca64267b6cb 525 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 525 184.913 T 13-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CDG55_01625 9cb3dcc32e8e3a077cdb6ca64267b6cb 525 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 18 524 6.9E-166 T 13-10-2018 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 CDG55_01625 9cb3dcc32e8e3a077cdb6ca64267b6cb 525 Gene3D G3DSA:3.30.590.20 19 525 1.6E-178 T 13-10-2018 CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 SMART SM01228 543 614 8.4E-41 T 13-10-2018 CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 Pfam PF13932 GidA associated domain 402 613 1.7E-75 T 13-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 SUPERFAMILY SSF51905 7 261 3.48E-50 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 619 2.8E-273 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 Pfam PF01134 Glucose inhibited division protein A 8 398 4.5E-164 T 13-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 Gene3D G3DSA:1.10.10.1800 459 547 1.5E-23 T 13-10-2018 CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 Gene3D G3DSA:1.10.150.570 566 619 1.2E-21 T 13-10-2018 CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 621 41.748 T 13-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 Gene3D G3DSA:3.50.50.60 302 458 1.6E-55 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09885 6a1fb69ad788a433d4d0d012f8da4421 626 Gene3D G3DSA:3.50.50.60 2 223 7.2E-87 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_03135 6afb97e0296ad3698153a59a3d035169 109 SUPERFAMILY SSF54843 1 107 1.2E-41 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_03135 6afb97e0296ad3698153a59a3d035169 109 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 4.0E-36 T 13-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 CDG55_03135 6afb97e0296ad3698153a59a3d035169 109 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 109 25.388 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03135 6afb97e0296ad3698153a59a3d035169 109 Gene3D G3DSA:3.90.470.10 1 109 2.0E-44 T 13-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_03135 6afb97e0296ad3698153a59a3d035169 109 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 3.0E-46 T 13-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12030 3d7b961554a9ab6eec88a13cba75f7c6 376 SUPERFAMILY SSF51713 1 365 4.05E-163 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDG55_12030 3d7b961554a9ab6eec88a13cba75f7c6 376 Pfam PF01702 Queuine tRNA-ribosyltransferase 127 362 2.6E-93 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDG55_12030 3d7b961554a9ab6eec88a13cba75f7c6 376 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 7 368 2.3E-163 T 13-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDG55_12030 3d7b961554a9ab6eec88a13cba75f7c6 376 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 365 57.212 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDG55_12030 3d7b961554a9ab6eec88a13cba75f7c6 376 Gene3D G3DSA:3.20.20.105 1 368 5.5E-172 T 13-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDG55_12030 3d7b961554a9ab6eec88a13cba75f7c6 376 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 8 369 3.7E-172 T 13-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 CDG55_09355 b71d9bf6e3daa5762a31173c08c2eaec 94 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 73 5.2E-17 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CDG55_09355 b71d9bf6e3daa5762a31173c08c2eaec 94 SUPERFAMILY SSF54909 2 91 1.61E-24 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_09355 b71d9bf6e3daa5762a31173c08c2eaec 94 Gene3D G3DSA:3.30.70.100 1 93 3.7E-26 T 13-10-2018 CDG55_03685 35ba0d7230dff11f43756a4872818f49 352 Gene3D G3DSA:1.10.40.50 285 352 3.0E-22 T 13-10-2018 CDG55_03685 35ba0d7230dff11f43756a4872818f49 352 Gene3D G3DSA:2.40.50.140 32 115 9.1E-17 T 13-10-2018 CDG55_03685 35ba0d7230dff11f43756a4872818f49 352 SUPERFAMILY SSF52540 128 348 9.6E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03685 35ba0d7230dff11f43756a4872818f49 352 Pfam PF03193 RsgA GTPase 114 285 4.6E-49 T 13-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 CDG55_03685 35ba0d7230dff11f43756a4872818f49 352 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 34 349 32.78 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 CDG55_03685 35ba0d7230dff11f43756a4872818f49 352 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 92 342 6.1E-71 T 13-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 CDG55_03685 35ba0d7230dff11f43756a4872818f49 352 Gene3D G3DSA:3.40.50.300 117 284 8.0E-43 T 13-10-2018 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 SMART SM00984 317 417 7.9E-33 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 SUPERFAMILY SSF52413 300 416 4.19E-28 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 SUPERFAMILY SSF48179 201 292 1.68E-25 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 PIRSF PIRSF000124 6 422 2.0E-62 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 SUPERFAMILY SSF51735 7 191 2.31E-48 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 416 3.1E-21 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 Gene3D G3DSA:3.40.50.720 200 422 3.9E-56 T 13-10-2018 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 PIRSF PIRSF500136 1 423 1.7E-150 T 13-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 Gene3D G3DSA:3.40.50.720 2 197 3.4E-60 T 13-10-2018 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 202 290 1.3E-24 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 7 180 6.5E-37 T 13-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14795 55fac2f5b04d793783b9a3ff78680cca 424 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 7 408 4.0E-124 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDG55_03795 9505a7d603cd08c7e77929ac5242496e 200 Gene3D G3DSA:3.40.50.10610 43 192 3.4E-29 T 13-10-2018 CDG55_03795 9505a7d603cd08c7e77929ac5242496e 200 Pfam PF13036 Peptidoglycan-synthase activator LpoB 45 189 4.5E-53 T 13-10-2018 IPR014094 Penicillin-binding protein activator LpoB CDG55_03795 9505a7d603cd08c7e77929ac5242496e 200 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 9 191 1.1E-65 T 13-10-2018 IPR014094 Penicillin-binding protein activator LpoB CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 Gene3D G3DSA:3.30.420.10 1 157 6.6E-52 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 SUPERFAMILY SSF53098 4 138 2.09E-47 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 226 450 1.0E-78 T 13-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 Hamap MF_00042 Ribonuclease H [rnhA]. 2 145 27.047 T 13-10-2018 IPR022892 Ribonuclease HI GO:0004523 CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 Gene3D G3DSA:3.30.420.10 221 401 1.3E-50 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 Pfam PF00075 RNase H 4 136 6.0E-42 T 13-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 Pfam PF00929 Exonuclease 228 387 1.5E-29 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 SMART SM00479 226 396 1.8E-39 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 SUPERFAMILY SSF53098 220 395 9.62E-49 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_05935 6f3414058d93d13b2ba70254ea0bd09b 453 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 229 434 1.8E-56 T 13-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 CDG55_11545 10ce6a73513382d98671abd115b3febb 267 Gene3D G3DSA:1.25.40.10 26 266 6.8E-35 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_11545 10ce6a73513382d98671abd115b3febb 267 SMART SM00671 95 131 0.0013 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_11545 10ce6a73513382d98671abd115b3febb 267 SMART SM00671 206 241 0.015 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_11545 10ce6a73513382d98671abd115b3febb 267 SMART SM00671 59 94 5.8E-6 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_11545 10ce6a73513382d98671abd115b3febb 267 Pfam PF08238 Sel1 repeat 208 240 7.8 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_11545 10ce6a73513382d98671abd115b3febb 267 Pfam PF08238 Sel1 repeat 59 93 7.3E-4 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_11545 10ce6a73513382d98671abd115b3febb 267 Pfam PF08238 Sel1 repeat 96 131 0.19 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_11545 10ce6a73513382d98671abd115b3febb 267 SUPERFAMILY SSF81901 32 251 1.22E-23 T 13-10-2018 CDG55_03350 012daf329bb49a95859aeb29c54ba012 416 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 3 303 21.409 T 13-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial CDG55_03350 012daf329bb49a95859aeb29c54ba012 416 Pfam PF03631 Virulence factor BrkB 31 278 6.6E-53 T 13-10-2018 IPR017039 Virulence factor BrkB CDG55_03350 012daf329bb49a95859aeb29c54ba012 416 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 20 279 1.5E-58 T 13-10-2018 IPR017039 Virulence factor BrkB CDG55_06455 8c60adc5c3069e5c1ba6a6be8b2f4633 273 SMART SM00220 26 267 4.7E-6 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 CDG55_06455 8c60adc5c3069e5c1ba6a6be8b2f4633 273 SUPERFAMILY SSF56112 32 268 1.01E-25 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_06455 8c60adc5c3069e5c1ba6a6be8b2f4633 273 Gene3D G3DSA:1.10.510.10 116 271 4.9E-26 T 13-10-2018 CDG55_06455 8c60adc5c3069e5c1ba6a6be8b2f4633 273 Pfam PF00069 Protein kinase domain 126 258 1.1E-16 T 13-10-2018 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 CDG55_10140 a43fe689079d4531de187ccbcbafa7b9 277 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 7 270 3.4E-128 T 13-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 CDG55_10140 a43fe689079d4531de187ccbcbafa7b9 277 Gene3D G3DSA:1.10.3720.10 13 272 7.3E-71 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_10140 a43fe689079d4531de187ccbcbafa7b9 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 272 1.0E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_10140 a43fe689079d4531de187ccbcbafa7b9 277 SUPERFAMILY SSF161098 14 263 5.51E-57 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_10140 a43fe689079d4531de187ccbcbafa7b9 277 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 5 266 2.6E-96 T 13-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 CDG55_06185 f60295ef5adb5accbec8b0d56ece5dff 402 SUPERFAMILY SSF54511 235 345 7.15E-5 T 13-10-2018 IPR009017 Green fluorescent protein CDG55_06185 f60295ef5adb5accbec8b0d56ece5dff 402 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 21 396 1.0E-163 T 13-10-2018 IPR011673 Protein of unknown function DUF1615 CDG55_06185 f60295ef5adb5accbec8b0d56ece5dff 402 Pfam PF07759 Protein of unknown function (DUF1615) 52 396 2.0E-121 T 13-10-2018 IPR011673 Protein of unknown function DUF1615 CDG55_01295 d29c104d429053719ff0ee33716d2c8c 480 Gene3D G3DSA:3.40.309.10 257 446 9.7E-137 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CDG55_01295 d29c104d429053719ff0ee33716d2c8c 480 SUPERFAMILY SSF53720 9 478 3.01E-121 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_01295 d29c104d429053719ff0ee33716d2c8c 480 Pfam PF00171 Aldehyde dehydrogenase family 23 472 1.1E-127 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_01295 d29c104d429053719ff0ee33716d2c8c 480 Gene3D G3DSA:3.40.605.10 32 466 9.7E-137 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 Pfam PF08328 Adenylosuccinate lyase C-terminal 328 445 5.1E-46 T 13-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 Gene3D G3DSA:1.10.275.10 1 115 6.4E-48 T 13-10-2018 IPR024083 Fumarase/histidase, N-terminal CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 PRINTS PR00149 Fumarate lyase superfamily signature 160 178 3.3E-17 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 PRINTS PR00149 Fumarate lyase superfamily signature 115 133 3.3E-17 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 PRINTS PR00149 Fumarate lyase superfamily signature 248 275 3.3E-17 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 PRINTS PR00149 Fumarate lyase superfamily signature 291 307 3.3E-17 T 13-10-2018 IPR000362 Fumarate lyase family CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 Gene3D G3DSA:1.20.200.10 116 446 2.2E-147 T 13-10-2018 CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 SUPERFAMILY SSF48557 8 455 9.58E-104 T 13-10-2018 IPR008948 L-Aspartase-like GO:0003824 CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 Pfam PF00206 Lyase 12 309 1.8E-64 T 13-10-2018 IPR022761 Fumarate lyase, N-terminal CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 10 454 4.0E-130 T 13-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 CDG55_06495 5b9d65f8317b1bc9d0ba54f42d9ab789 462 Gene3D G3DSA:1.10.40.30 379 445 2.2E-147 T 13-10-2018 CDG55_08870 3b7057e1cbc096d9981f3d829176dd6e 399 Gene3D G3DSA:1.20.140.10 246 396 9.3E-31 T 13-10-2018 CDG55_08870 3b7057e1cbc096d9981f3d829176dd6e 399 SUPERFAMILY SSF56645 5 252 2.88E-45 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_08870 3b7057e1cbc096d9981f3d829176dd6e 399 Gene3D G3DSA:1.10.540.10 1 129 2.2E-5 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_08870 3b7057e1cbc096d9981f3d829176dd6e 399 SUPERFAMILY SSF47203 239 393 4.03E-32 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_08870 3b7057e1cbc096d9981f3d829176dd6e 399 Gene3D G3DSA:2.40.110.10 130 245 1.2E-35 T 13-10-2018 CDG55_08870 3b7057e1cbc096d9981f3d829176dd6e 399 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 224 9.8E-23 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_08870 3b7057e1cbc096d9981f3d829176dd6e 399 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 241 390 6.5E-39 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 Gene3D G3DSA:1.20.1580.10 694 832 1.1E-141 T 13-10-2018 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 Gene3D G3DSA:1.20.1580.10 92 493 1.2E-244 T 13-10-2018 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 Gene3D G3DSA:3.30.190.20 132 245 1.2E-244 T 13-10-2018 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 Gene3D G3DSA:3.40.50.300 618 938 1.1E-141 T 13-10-2018 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 Gene3D G3DSA:1.10.8.280 288 404 1.2E-244 T 13-10-2018 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 SUPERFAMILY SSF52540 616 913 1.16E-53 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 Pfam PF00005 ABC transporter 625 862 3.8E-11 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 Gene3D G3DSA:3.40.50.300 8 596 1.2E-244 T 13-10-2018 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 Hamap MF_00205 UvrABC system protein A [uvrA]. 3 942 22.316 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 SUPERFAMILY SSF52540 6 570 7.14E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01970 2867d1b043f8d23d56de4a87c8034363 943 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 6 927 0.0 T 13-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 CDG55_05165 46d2adf1f1c9d4f946e05e3e8f442baa 145 Gene3D G3DSA:3.30.1490.190 85 141 8.3E-23 T 13-10-2018 CDG55_05165 46d2adf1f1c9d4f946e05e3e8f442baa 145 SUPERFAMILY SSF46785 6 135 8.59E-44 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_05165 46d2adf1f1c9d4f946e05e3e8f442baa 145 Pfam PF01475 Ferric uptake regulator family 10 130 8.7E-45 T 13-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 CDG55_05165 46d2adf1f1c9d4f946e05e3e8f442baa 145 Gene3D G3DSA:1.10.10.10 2 84 1.1E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_02390 4fe24b796732df75b01ccf3044d30558 468 Pfam PF00324 Amino acid permease 23 465 9.2E-116 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CDG55_02390 4fe24b796732df75b01ccf3044d30558 468 Gene3D G3DSA:1.20.1740.10 13 467 1.7E-62 T 13-10-2018 CDG55_02390 4fe24b796732df75b01ccf3044d30558 468 PIRSF PIRSF006060 1 468 1.4E-74 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CDG55_03485 c1acb0a950f2609d89c7a391045226f6 339 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 4 337 47.931 T 13-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 CDG55_03485 c1acb0a950f2609d89c7a391045226f6 339 SUPERFAMILY SSF51445 3 292 7.05E-78 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CDG55_03485 c1acb0a950f2609d89c7a391045226f6 339 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 6 298 8.0E-75 T 13-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 CDG55_03485 c1acb0a950f2609d89c7a391045226f6 339 Gene3D G3DSA:3.20.20.300 1 338 2.1E-111 T 13-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 CDG55_07595 1c356cf6d9863241f3acb1f6ad4ea75a 203 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 108 198 1.6E-42 T 13-10-2018 IPR012997 Rare lipoprotein A CDG55_07595 1c356cf6d9863241f3acb1f6ad4ea75a 203 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 27 198 24.56 T 13-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 CDG55_07595 1c356cf6d9863241f3acb1f6ad4ea75a 203 Gene3D G3DSA:2.40.40.10 105 199 2.1E-39 T 13-10-2018 IPR036908 RlpA-like domain superfamily CDG55_07595 1c356cf6d9863241f3acb1f6ad4ea75a 203 Pfam PF03330 Lytic transglycolase 106 194 3.8E-26 T 13-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain CDG55_07595 1c356cf6d9863241f3acb1f6ad4ea75a 203 SUPERFAMILY SSF50685 106 199 4.53E-14 T 13-10-2018 IPR036908 RlpA-like domain superfamily CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 Pfam PF01336 OB-fold nucleic acid binding domain 19 103 6.1E-18 T 13-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 SUPERFAMILY SSF55681 113 586 8.76E-105 T 13-10-2018 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 Gene3D G3DSA:3.30.930.10 120 582 6.2E-196 T 13-10-2018 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 2 585 33.305 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 Gene3D G3DSA:3.30.1360.30 275 423 6.2E-196 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 Gene3D G3DSA:2.40.50.140 1 107 2.4E-34 T 13-10-2018 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 SUPERFAMILY SSF55261 293 422 4.09E-43 T 13-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 SUPERFAMILY SSF50249 2 106 1.56E-33 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 4.5E-240 T 13-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 559 1.3E-107 T 13-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 Pfam PF02938 GAD domain 311 409 2.0E-28 T 13-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 1.2E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 1.2E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 1.2E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_11880 772629b0321b2e370f34cc8e60b812a8 593 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 1.2E-26 T 13-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.8E-36 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.8E-36 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.8E-36 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.8E-36 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 36.764 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 Gene3D G3DSA:3.90.1170.10 1 137 5.2E-55 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 4.5E-47 T 13-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 SUPERFAMILY SSF54686 1 134 1.31E-53 T 13-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 CDG55_03145 c22280b150b0a9860bad9d9c77caa2c7 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 5.7E-57 T 13-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_07915 b9431f33ac2d31bee367cc3c02ca3c49 209 SUPERFAMILY SSF53474 3 208 8.4E-35 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_07915 b9431f33ac2d31bee367cc3c02ca3c49 209 Gene3D G3DSA:3.40.50.1820 1 209 4.3E-43 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_08025 35290157e963dcf3bcb3ccf25bab1df7 821 Pfam PF03968 OstA-like protein 110 242 6.8E-10 T 13-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal CDG55_08025 35290157e963dcf3bcb3ccf25bab1df7 821 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 12 795 19.071 T 13-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 CDG55_08025 35290157e963dcf3bcb3ccf25bab1df7 821 Pfam PF04453 Organic solvent tolerance protein 350 728 6.7E-79 T 13-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 CDG55_04270 8956a50a99834c439c03be0fa836eaae 546 SUPERFAMILY SSF51905 39 354 5.99E-22 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_04270 8956a50a99834c439c03be0fa836eaae 546 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 37 524 49.237 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CDG55_04270 8956a50a99834c439c03be0fa836eaae 546 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 41 524 8.2E-218 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CDG55_04270 8956a50a99834c439c03be0fa836eaae 546 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 41 522 2.4E-189 T 13-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 SUPERFAMILY SSF50974 552 901 2.38E-20 T 13-10-2018 IPR011045 Nitrous oxide reductase, N-terminal Reactome: R-HSA-114608 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:2.180.10.10 2232 2356 2.2E-6 T 13-10-2018 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:2.180.10.10 2604 2849 1.9E-23 T 13-10-2018 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 2771 2849 2.8E-17 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:2.130.10.10 530 709 1.5E-5 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:2.130.10.10 710 915 8.7E-12 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:2.60.40.10 1236 1324 1.8E-12 T 13-10-2018 IPR013783 Immunoglobulin-like fold CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:2.60.40.10 1326 1411 3.6E-13 T 13-10-2018 IPR013783 Immunoglobulin-like fold CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2627 2661 0.0011 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2364 2404 2.6E-4 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2136 2172 8.3E-4 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2217 2253 3.8E-7 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2245 2277 8.6E-4 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1873 1911 1.6E-4 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1979 2017 0.0013 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2496 2523 0.002 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1925 1954 1.2E-4 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 1832 1865 5.3E-5 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2066 2093 4.4E-4 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2322 2363 7.6E-10 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2280 2320 0.0021 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 2175 2211 4.2E-7 T 13-10-2018 IPR006530 YD repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 SUPERFAMILY SSF49313 1240 1325 8.03E-11 T 13-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 SUPERFAMILY SSF69304 2305 2497 1.31E-5 T 13-10-2018 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 2066 2089 1.0E-4 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 2175 2211 4.8E-5 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 2217 2253 1.2E-8 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 2326 2347 4.1E-5 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 2627 2657 1.2E-4 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 1832 1867 5.5E-7 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 2259 2295 1.1E-7 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 2343 2378 1.1E-5 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 2385 2422 3.9E-5 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Pfam PF05593 RHS Repeat 1924 1951 1.4E-4 T 13-10-2018 IPR031325 RHS repeat CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 SUPERFAMILY SSF49313 1328 1414 3.73E-10 T 13-10-2018 IPR015919 Cadherin-like superfamily GO:0005509|GO:0016020 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:3.90.930.1 2357 2501 2.9E-12 T 13-10-2018 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:3.90.930.1 2050 2146 7.6E-7 T 13-10-2018 CDG55_04925 0122858f833279e64c70cbf32d0dcaa1 3044 Gene3D G3DSA:3.90.930.1 1906 2049 3.0E-9 T 13-10-2018 CDG55_13340 753936b74d5dd79118e32cff33d00759 91 PIRSF PIRSF028784 1 91 6.2E-28 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CDG55_13340 753936b74d5dd79118e32cff33d00759 91 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 34 84 7.3E-18 T 13-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 CDG55_03170 483d23e0f91a1d4df90de2beb18616c6 178 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 178 42.034 T 13-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03170 483d23e0f91a1d4df90de2beb18616c6 178 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.4E-41 T 13-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03170 483d23e0f91a1d4df90de2beb18616c6 178 Gene3D G3DSA:3.30.1440.10 1 178 4.9E-78 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03170 483d23e0f91a1d4df90de2beb18616c6 178 PIRSF PIRSF002161 1 178 1.9E-65 T 13-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03170 483d23e0f91a1d4df90de2beb18616c6 178 Pfam PF00281 Ribosomal protein L5 24 80 5.9E-27 T 13-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03170 483d23e0f91a1d4df90de2beb18616c6 178 SUPERFAMILY SSF55282 3 178 3.77E-76 T 13-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_12890 60f54d754558ecc7d1ecd42d72f0fe6a 216 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 2.3E-83 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 CDG55_12890 60f54d754558ecc7d1ecd42d72f0fe6a 216 Gene3D G3DSA:3.20.19.10 1 184 7.3E-77 T 13-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 CDG55_12890 60f54d754558ecc7d1ecd42d72f0fe6a 216 SUPERFAMILY SSF52016 1 204 5.69E-61 T 13-10-2018 CDG55_12890 60f54d754558ecc7d1ecd42d72f0fe6a 216 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 43.325 T 13-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 CDG55_12890 60f54d754558ecc7d1ecd42d72f0fe6a 216 Pfam PF00694 Aconitase C-terminal domain 1 132 7.2E-37 T 13-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 CDG55_00295 a9257fa43612ae99a114a0a56d13bb1a 399 Pfam PF13356 Arm DNA-binding domain 3 74 8.5E-10 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CDG55_00295 a9257fa43612ae99a114a0a56d13bb1a 399 Gene3D G3DSA:1.10.150.130 83 201 3.0E-20 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_00295 a9257fa43612ae99a114a0a56d13bb1a 399 Gene3D G3DSA:3.30.160.390 1 77 1.1E-20 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CDG55_00295 a9257fa43612ae99a114a0a56d13bb1a 399 SUPERFAMILY SSF56349 89 389 7.06E-43 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_00295 a9257fa43612ae99a114a0a56d13bb1a 399 Pfam PF00589 Phage integrase family 226 379 2.7E-13 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_00295 a9257fa43612ae99a114a0a56d13bb1a 399 Gene3D G3DSA:1.10.443.10 202 390 8.2E-13 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_09925 d1b9287efe38a224c1b3df93f0db1520 341 SUPERFAMILY SSF55021 248 335 3.78E-21 T 13-10-2018 CDG55_09925 d1b9287efe38a224c1b3df93f0db1520 341 Gene3D G3DSA:3.40.50.300 1 232 3.8E-73 T 13-10-2018 CDG55_09925 d1b9287efe38a224c1b3df93f0db1520 341 SMART SM00930 262 337 2.0E-21 T 13-10-2018 IPR018449 NIL domain CDG55_09925 d1b9287efe38a224c1b3df93f0db1520 341 Gene3D G3DSA:3.30.70.260 233 339 6.5E-27 T 13-10-2018 CDG55_09925 d1b9287efe38a224c1b3df93f0db1520 341 Pfam PF09383 NIL domain 265 335 3.3E-20 T 13-10-2018 IPR018449 NIL domain CDG55_09925 d1b9287efe38a224c1b3df93f0db1520 341 SMART SM00382 30 218 3.7E-13 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_09925 d1b9287efe38a224c1b3df93f0db1520 341 Pfam PF00005 ABC transporter 21 169 3.2E-36 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_09925 d1b9287efe38a224c1b3df93f0db1520 341 SUPERFAMILY SSF52540 1 240 1.09E-81 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_11630 1731b633fa221611976391db920126c5 547 SUPERFAMILY SSF55124 253 419 2.76E-23 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_11630 1731b633fa221611976391db920126c5 547 Gene3D G3DSA:3.90.480.10 53 387 7.5E-75 T 13-10-2018 CDG55_11630 1731b633fa221611976391db920126c5 547 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 409 544 2.1E-10 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_11630 1731b633fa221611976391db920126c5 547 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 328 396 1.3E-15 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_11630 1731b633fa221611976391db920126c5 547 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 109 6.3E-17 T 13-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_11630 1731b633fa221611976391db920126c5 547 Gene3D G3DSA:3.30.413.10 406 547 3.4E-31 T 13-10-2018 CDG55_11630 1731b633fa221611976391db920126c5 547 SUPERFAMILY SSF55124 1 125 1.35E-29 T 13-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_11630 1731b633fa221611976391db920126c5 547 SUPERFAMILY SSF56014 405 546 1.2E-39 T 13-10-2018 CDG55_11630 1731b633fa221611976391db920126c5 547 SUPERFAMILY SSF56014 120 278 1.26E-42 T 13-10-2018 CDG55_11630 1731b633fa221611976391db920126c5 547 Gene3D G3DSA:3.30.413.10 119 315 7.5E-75 T 13-10-2018 CDG55_11630 1731b633fa221611976391db920126c5 547 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 274 1.3E-38 T 13-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 PIRSF PIRSF002583 1 639 7.9E-212 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 SUPERFAMILY SSF55874 7 217 2.69E-65 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 SUPERFAMILY SSF110942 528 638 9.02E-34 T 13-10-2018 IPR037196 HSP90, C-terminal domain CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 Gene3D G3DSA:1.20.120.790 509 639 1.7E-42 T 13-10-2018 IPR037196 HSP90, C-terminal domain CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 Pfam PF00183 Hsp90 protein 235 637 4.6E-125 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 PRINTS PR00775 90kDa heat shock protein signature 95 112 1.9E-62 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 PRINTS PR00775 90kDa heat shock protein signature 174 191 1.9E-62 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 PRINTS PR00775 90kDa heat shock protein signature 192 210 1.9E-62 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 PRINTS PR00775 90kDa heat shock protein signature 77 94 1.9E-62 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 PRINTS PR00775 90kDa heat shock protein signature 122 144 1.9E-62 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 PRINTS PR00775 90kDa heat shock protein signature 7 27 1.9E-62 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 PRINTS PR00775 90kDa heat shock protein signature 28 50 1.9E-62 T 13-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 31 184 2.0E-12 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 Gene3D G3DSA:3.30.565.10 1 229 1.1E-77 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 SMART SM00387 29 186 2.8E-4 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 Hamap MF_00505 Chaperone protein HtpG [htpG]. 4 638 31.338 T 13-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 Gene3D G3DSA:3.30.230.80 244 415 1.5E-64 T 13-10-2018 CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 SUPERFAMILY SSF54211 245 502 2.43E-92 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_13620 9c1b8b24a252739f3af0732dc16d5f97 639 Gene3D G3DSA:3.40.50.11260 416 503 2.0E-31 T 13-10-2018 CDG55_02350 9c9137aefdb547856b93a19565180954 408 SUPERFAMILY SSF111369 103 322 6.02E-21 T 13-10-2018 CDG55_02350 9c9137aefdb547856b93a19565180954 408 Gene3D G3DSA:2.40.420.20 79 386 1.8E-61 T 13-10-2018 CDG55_02350 9c9137aefdb547856b93a19565180954 408 Gene3D G3DSA:2.40.50.100 105 244 1.8E-61 T 13-10-2018 CDG55_02350 9c9137aefdb547856b93a19565180954 408 Gene3D G3DSA:2.40.30.170 91 323 1.8E-61 T 13-10-2018 CDG55_02350 9c9137aefdb547856b93a19565180954 408 Gene3D G3DSA:1.10.287.470 139 209 1.8E-61 T 13-10-2018 CDG55_02350 9c9137aefdb547856b93a19565180954 408 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 90 316 3.2E-29 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDG55_02350 9c9137aefdb547856b93a19565180954 408 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 78 396 4.3E-40 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CDG55_01680 ff2f36f4271df0c192268cb3d201fce9 183 SUPERFAMILY SSF55729 18 180 1.52E-32 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_01680 ff2f36f4271df0c192268cb3d201fce9 183 Gene3D G3DSA:3.40.630.30 14 183 8.6E-49 T 13-10-2018 CDG55_01680 ff2f36f4271df0c192268cb3d201fce9 183 Pfam PF13420 Acetyltransferase (GNAT) domain 18 174 2.6E-22 T 13-10-2018 CDG55_15160 bc1d6a84bb58a7357bde399bc534e9ff 106 Pfam PF01809 Haemolytic domain 3 68 4.7E-30 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CDG55_15160 bc1d6a84bb58a7357bde399bc534e9ff 106 SMART SM01234 1 68 1.9E-45 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CDG55_15160 bc1d6a84bb58a7357bde399bc534e9ff 106 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 7 72 8.8E-29 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CDG55_15160 bc1d6a84bb58a7357bde399bc534e9ff 106 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 69 24.187 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CDG55_15160 bc1d6a84bb58a7357bde399bc534e9ff 106 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 16 68 1.0E-21 T 13-10-2018 IPR002696 Putative membrane protein insertion efficiency factor CDG55_05440 8c85a28b872a61d6db892f9247aebb8e 800 Pfam PF03895 YadA-like membrane anchor domain 743 797 1.2E-8 T 13-10-2018 IPR005594 YadA-like, C-terminal CDG55_05440 8c85a28b872a61d6db892f9247aebb8e 800 Gene3D G3DSA:3.30.1300.30 695 797 3.4E-17 T 13-10-2018 CDG55_05440 8c85a28b872a61d6db892f9247aebb8e 800 SUPERFAMILY SSF54523 703 797 2.04E-13 T 13-10-2018 CDG55_04905 431ae895c26130dcfd1904f27bf69041 348 Pfam PF07603 Protein of unknown function (DUF1566) 197 345 1.2E-27 T 13-10-2018 IPR011460 Protein of unknown function DUF1566 CDG55_01345 a051b21854c92082145ee420102117a5 366 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 352 1.2E-68 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CDG55_01345 a051b21854c92082145ee420102117a5 366 Gene3D G3DSA:1.10.287.470 92 164 2.7E-74 T 13-10-2018 CDG55_01345 a051b21854c92082145ee420102117a5 366 SUPERFAMILY SSF111369 49 241 3.53E-20 T 13-10-2018 CDG55_01345 a051b21854c92082145ee420102117a5 366 Gene3D G3DSA:2.40.30.170 44 279 2.7E-74 T 13-10-2018 CDG55_01345 a051b21854c92082145ee420102117a5 366 Gene3D G3DSA:2.40.50.100 58 204 2.7E-74 T 13-10-2018 CDG55_01345 a051b21854c92082145ee420102117a5 366 Gene3D G3DSA:2.40.420.20 41 350 2.7E-74 T 13-10-2018 CDG55_01345 a051b21854c92082145ee420102117a5 366 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 55 262 6.2E-17 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDG55_06565 189e542f8a1eb3dd3fb56967ccb8f7ab 133 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 3 123 7.6E-24 T 13-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CDG55_06565 189e542f8a1eb3dd3fb56967ccb8f7ab 133 SUPERFAMILY SSF54593 1 126 1.34E-36 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDG55_06565 189e542f8a1eb3dd3fb56967ccb8f7ab 133 Gene3D G3DSA:3.10.180.10 1 133 6.2E-51 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDG55_06565 189e542f8a1eb3dd3fb56967ccb8f7ab 133 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 130 1.0E-66 T 13-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 CDG55_06685 1411fbd8a13450c2f0c01e5a1cb5f7f8 344 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 340 3.7E-118 T 13-10-2018 IPR017686 Phage/plasmid-like protein CDG55_06685 1411fbd8a13450c2f0c01e5a1cb5f7f8 344 Pfam PF06067 Domain of unknown function (DUF932) 77 324 4.8E-80 T 13-10-2018 IPR026325 Protein of unknown function DUF932 CDG55_01905 95190b2c98604e5bdaa780c7efc75e41 438 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 44 221 6.7E-55 T 13-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 CDG55_01905 95190b2c98604e5bdaa780c7efc75e41 438 Gene3D G3DSA:3.40.50.11720 38 219 1.5E-41 T 13-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 CDG55_01905 95190b2c98604e5bdaa780c7efc75e41 438 SUPERFAMILY SSF53756 66 432 2.3E-11 T 13-10-2018 CDG55_01905 95190b2c98604e5bdaa780c7efc75e41 438 Gene3D G3DSA:3.40.50.2000 225 416 9.9E-61 T 13-10-2018 CDG55_01315 cbb0e24b9844003a592b45e72c126fb4 320 SUPERFAMILY SSF53328 1 187 9.03E-60 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDG55_01315 cbb0e24b9844003a592b45e72c126fb4 320 SUPERFAMILY SSF50486 214 319 4.08E-25 T 13-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 CDG55_01315 cbb0e24b9844003a592b45e72c126fb4 320 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 314 34.675 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CDG55_01315 cbb0e24b9844003a592b45e72c126fb4 320 Pfam PF02911 Formyl transferase, C-terminal domain 211 309 1.9E-21 T 13-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDG55_01315 cbb0e24b9844003a592b45e72c126fb4 320 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 2 312 2.2E-92 T 13-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 CDG55_01315 cbb0e24b9844003a592b45e72c126fb4 320 Gene3D G3DSA:3.40.50.170 1 213 1.1E-75 T 13-10-2018 CDG55_01315 cbb0e24b9844003a592b45e72c126fb4 320 Pfam PF00551 Formyl transferase 2 184 3.2E-46 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDG55_01315 cbb0e24b9844003a592b45e72c126fb4 320 Gene3D G3DSA:3.10.25.10 214 317 5.1E-25 T 13-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDG55_13085 a5db4b14fd39a83afd9b0f833bbc47e2 63 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 1 61 17.625 T 13-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 CDG55_13085 a5db4b14fd39a83afd9b0f833bbc47e2 63 SUPERFAMILY SSF57716 2 59 2.42E-19 T 13-10-2018 CDG55_13085 a5db4b14fd39a83afd9b0f833bbc47e2 63 Gene3D G3DSA:3.30.50.10 2 62 9.3E-21 T 13-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 CDG55_13085 a5db4b14fd39a83afd9b0f833bbc47e2 63 Pfam PF03884 DNA gyrase inhibitor YacG 6 52 5.3E-22 T 13-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 CDG55_05700 6aff752ec64f83fd827445e1ffd71fe0 459 Gene3D G3DSA:1.10.3720.10 223 457 4.7E-36 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_05700 6aff752ec64f83fd827445e1ffd71fe0 459 SUPERFAMILY SSF161098 170 450 3.66E-34 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_05700 6aff752ec64f83fd827445e1ffd71fe0 459 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 164 454 1.4E-87 T 13-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 CDG55_05700 6aff752ec64f83fd827445e1ffd71fe0 459 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 249 455 4.2E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_05700 6aff752ec64f83fd827445e1ffd71fe0 459 Pfam PF12501 Phosphate ATP-binding cassette transporter 8 180 6.2E-36 T 13-10-2018 IPR022182 ABC transporter phosphate permease PstC, N-terminal domain GO:0006817 CDG55_07245 14dfe18753c9c7d49e319d507135855b 266 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 265 18.315 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CDG55_07245 14dfe18753c9c7d49e319d507135855b 266 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 258 2.8E-78 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CDG55_07245 14dfe18753c9c7d49e319d507135855b 266 Pfam PF02673 Bacitracin resistance protein BacA 9 260 3.4E-86 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CDG55_10035 7e8c600eeca1764c40dc79f800f24348 252 SUPERFAMILY SSF102705 1 251 1.96E-77 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CDG55_10035 7e8c600eeca1764c40dc79f800f24348 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 6 240 1.0E-61 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CDG55_10035 7e8c600eeca1764c40dc79f800f24348 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 3 250 2.7E-60 T 13-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CDG55_10035 7e8c600eeca1764c40dc79f800f24348 252 Gene3D G3DSA:3.40.1390.30 98 223 1.4E-79 T 13-10-2018 CDG55_10035 7e8c600eeca1764c40dc79f800f24348 252 Gene3D G3DSA:3.40.1390.30 7 239 1.4E-79 T 13-10-2018 CDG55_03400 c77936f5e3761d6f7f767139d5761ce4 195 SMART SM00671 125 156 240.0 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_03400 c77936f5e3761d6f7f767139d5761ce4 195 SMART SM00671 89 124 2.7E-10 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_03400 c77936f5e3761d6f7f767139d5761ce4 195 SMART SM00671 53 88 7.0E-7 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_03400 c77936f5e3761d6f7f767139d5761ce4 195 Gene3D G3DSA:1.25.40.10 22 195 3.1E-35 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_03400 c77936f5e3761d6f7f767139d5761ce4 195 Pfam PF08238 Sel1 repeat 54 87 2.1E-4 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_03400 c77936f5e3761d6f7f767139d5761ce4 195 Pfam PF08238 Sel1 repeat 89 124 5.6E-9 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_03400 c77936f5e3761d6f7f767139d5761ce4 195 Pfam PF08238 Sel1 repeat 129 152 19.0 T 13-10-2018 IPR006597 Sel1-like repeat CDG55_03400 c77936f5e3761d6f7f767139d5761ce4 195 SUPERFAMILY SSF81901 41 152 1.96E-26 T 13-10-2018 CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 327 416 2.7E-23 T 13-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 422 511 1.7E-23 T 13-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 SUPERFAMILY SSF53686 8 363 3.14E-96 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 Gene3D G3DSA:3.40.1020.10 336 512 2.2E-63 T 13-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 314 3.9E-76 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 5 511 1.7E-215 T 13-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 Gene3D G3DSA:3.40.50.1100 50 146 6.3E-129 T 13-10-2018 CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 SUPERFAMILY SSF55021 417 511 2.22E-24 T 13-10-2018 CDG55_08395 daac6ad9b9356ab2dafa419bbab70147 512 Gene3D G3DSA:3.40.50.1100 14 325 6.3E-129 T 13-10-2018 CDG55_15100 d2cc250078d3cc8403f3985358c7a53c 318 Pfam PF03741 Integral membrane protein TerC family 80 282 1.7E-52 T 13-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 CDG55_15100 d2cc250078d3cc8403f3985358c7a53c 318 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 6 313 1.5E-118 T 13-10-2018 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 SUPERFAMILY SSF50249 7 83 4.28E-32 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 6 81 25.009 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 Pfam PF00366 Ribosomal protein S17 11 78 1.5E-31 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 Gene3D G3DSA:2.40.50.140 2 84 5.1E-35 T 13-10-2018 CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 PRINTS PR00973 Ribosomal protein S17 family signature 57 67 3.6E-12 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 PRINTS PR00973 Ribosomal protein S17 family signature 67 74 3.6E-12 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 PRINTS PR00973 Ribosomal protein S17 family signature 25 48 3.6E-12 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 7 77 2.0E-34 T 13-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03155 60b140eb55cbe991ac2bb7183a10a3ea 85 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 7 77 1.9E-36 T 13-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_09265 1ab2656d4b6d1b234ede76782574abbd 257 Gene3D G3DSA:3.40.50.720 11 257 1.4E-82 T 13-10-2018 CDG55_09265 1ab2656d4b6d1b234ede76782574abbd 257 SUPERFAMILY SSF69572 3 255 3.4E-84 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CDG55_09265 1ab2656d4b6d1b234ede76782574abbd 257 Pfam PF00899 ThiF family 19 252 2.9E-63 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDG55_14730 087d653fb4a4c56596a0a80e973ada23 624 Pfam PF13727 CoA-binding domain 84 237 8.6E-8 T 13-10-2018 CDG55_14730 087d653fb4a4c56596a0a80e973ada23 624 SUPERFAMILY SSF51735 147 271 4.72E-15 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_14730 087d653fb4a4c56596a0a80e973ada23 624 Gene3D G3DSA:3.40.50.720 281 613 1.9E-115 T 13-10-2018 CDG55_14730 087d653fb4a4c56596a0a80e973ada23 624 Pfam PF02719 Polysaccharide biosynthesis protein 286 573 2.8E-124 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CDG55_14730 087d653fb4a4c56596a0a80e973ada23 624 Gene3D G3DSA:3.40.50.720 146 267 6.1E-28 T 13-10-2018 CDG55_14730 087d653fb4a4c56596a0a80e973ada23 624 SUPERFAMILY SSF51735 283 552 5.22E-53 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09830 46da32176e6e62ee438c55a1fb5143d7 332 Gene3D G3DSA:3.20.20.140 1 332 1.5E-109 T 13-10-2018 CDG55_09830 46da32176e6e62ee438c55a1fb5143d7 332 Hamap MF_01962 Adenine deaminase. 6 318 89.573 T 13-10-2018 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 CDG55_09830 46da32176e6e62ee438c55a1fb5143d7 332 Pfam PF00962 Adenosine/AMP deaminase 10 326 2.8E-80 T 13-10-2018 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 CDG55_09830 46da32176e6e62ee438c55a1fb5143d7 332 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 10 329 1.7E-125 T 13-10-2018 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 CDG55_09830 46da32176e6e62ee438c55a1fb5143d7 332 SUPERFAMILY SSF51556 5 330 1.06E-90 T 13-10-2018 IPR032466 Metal-dependent hydrolase CDG55_12560 69a355c1918e1aa390ac015b2dd45384 674 Pfam PF03235 Protein of unknown function DUF262 10 219 8.6E-32 T 13-10-2018 IPR004919 Domain of unknown function DUF262 CDG55_12560 69a355c1918e1aa390ac015b2dd45384 674 Pfam PF07510 Protein of unknown function (DUF1524) 410 551 3.6E-27 T 13-10-2018 IPR011089 Domain of unknown function DUF1524 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 Pfam PF03717 Penicillin-binding Protein dimerisation domain 73 247 3.3E-17 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 Gene3D G3DSA:3.40.710.10 325 507 5.2E-125 T 13-10-2018 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 Gene3D G3DSA:3.30.450.330 264 591 5.2E-125 T 13-10-2018 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 Pfam PF00905 Penicillin binding protein transpeptidase domain 289 587 3.4E-73 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 24 602 40.636 T 13-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 Gene3D G3DSA:3.90.1310.10 58 138 2.7E-10 T 13-10-2018 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 Gene3D G3DSA:3.90.1310.10 156 263 7.1E-32 T 13-10-2018 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 SUPERFAMILY SSF56519 68 262 4.84E-36 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CDG55_02430 6d9e9590c48f984f8148a633497d75d2 609 SUPERFAMILY SSF56601 214 601 1.88E-92 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_10690 f230f6e2f9a6c1f1dc62a0227fb0afc9 169 Pfam PF01292 Prokaryotic cytochrome b561 4 165 9.0E-22 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CDG55_10690 f230f6e2f9a6c1f1dc62a0227fb0afc9 169 SUPERFAMILY SSF81342 4 165 1.26E-20 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CDG55_03500 f8f87177516333c6bf1e655dc35c7d7a 148 Gene3D G3DSA:2.40.128.520 21 148 1.0E-17 T 13-10-2018 CDG55_03500 f8f87177516333c6bf1e655dc35c7d7a 148 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 26 146 4.9E-26 T 13-10-2018 IPR019223 Domain of unknown function DUF2147 CDG55_09065 402b9e8a41e13ce24f9f261bff2a2601 207 Pfam PF12804 MobA-like NTP transferase domain 11 168 2.0E-20 T 13-10-2018 IPR025877 MobA-like NTP transferase CDG55_09065 402b9e8a41e13ce24f9f261bff2a2601 207 Gene3D G3DSA:3.90.550.10 5 204 2.8E-33 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_09065 402b9e8a41e13ce24f9f261bff2a2601 207 SUPERFAMILY SSF53448 9 195 1.71E-19 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_03055 0cc734ca5f427286e669a671ee444610 851 PIRSF PIRSF500064 9 832 9.1E-231 T 13-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 CDG55_03055 0cc734ca5f427286e669a671ee444610 851 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 15 818 1.3E-300 T 13-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 CDG55_03055 0cc734ca5f427286e669a671ee444610 851 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 15 823 23.403 T 13-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 CDG55_03055 0cc734ca5f427286e669a671ee444610 851 Pfam PF01553 Acyltransferase 294 434 3.3E-20 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_03055 0cc734ca5f427286e669a671ee444610 851 SMART SM00563 311 438 2.3E-25 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_03055 0cc734ca5f427286e669a671ee444610 851 SUPERFAMILY SSF69593 259 494 5.23E-25 T 13-10-2018 CDG55_03055 0cc734ca5f427286e669a671ee444610 851 PIRSF PIRSF000437 28 834 9.7E-223 T 13-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 CDG55_07840 cf4c413c0348d78ec9f9c3f6574ad804 189 Gene3D G3DSA:1.25.40.10 89 167 4.6E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_07840 cf4c413c0348d78ec9f9c3f6574ad804 189 SUPERFAMILY SSF48452 78 186 1.16E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 Gene3D G3DSA:3.30.70.920 56 149 1.9E-20 T 13-10-2018 CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 SMART SM00344 4 113 4.0E-44 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 Gene3D G3DSA:1.10.10.10 1 55 4.6E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 SUPERFAMILY SSF54909 66 151 1.21E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 SUPERFAMILY SSF46785 3 61 6.29E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 2.0E-17 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 2.0E-17 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 2.0E-17 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 1.4E-17 T 13-10-2018 CDG55_14635 a354e9bc33b340ea38df66cd45c5e168 155 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 5.1E-19 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 Gene3D G3DSA:1.10.540.10 2 120 1.0E-34 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 229 377 2.7E-38 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 SUPERFAMILY SSF56645 4 241 2.23E-82 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 Gene3D G3DSA:2.40.110.10 121 234 1.9E-40 T 13-10-2018 CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 118 8.6E-33 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 PIRSF PIRSF016578 8 380 5.3E-16 T 13-10-2018 CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 217 5.3E-24 T 13-10-2018 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0016627|GO:0055114 CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 SUPERFAMILY SSF47203 229 379 3.22E-44 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_07870 3440a71d0f9d738a96b94e85f9632389 381 Gene3D G3DSA:1.20.140.10 235 381 2.8E-41 T 13-10-2018 CDG55_10440 5218b5a6f0c95350bb3ba335a0cc9197 249 Gene3D G3DSA:3.40.50.620 1 247 7.6E-83 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10440 5218b5a6f0c95350bb3ba335a0cc9197 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 3.7E-44 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDG55_10440 5218b5a6f0c95350bb3ba335a0cc9197 249 SUPERFAMILY SSF52402 1 242 2.37E-82 T 13-10-2018 CDG55_10440 5218b5a6f0c95350bb3ba335a0cc9197 249 SMART SM00893 23 211 7.9E-65 T 13-10-2018 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: R-HSA-611105 CDG55_10440 5218b5a6f0c95350bb3ba335a0cc9197 249 PIRSF PIRSF000090 1 249 1.5E-80 T 13-10-2018 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 Reactome: R-HSA-611105|Reactome: R-HSA-8876725 CDG55_06830 8d3ce608e2874f84b5b9a0a99d17ffe2 349 Pfam PF02353 Mycolic acid cyclopropane synthetase 67 330 2.6E-44 T 13-10-2018 CDG55_06830 8d3ce608e2874f84b5b9a0a99d17ffe2 349 SUPERFAMILY SSF53335 70 338 3.38E-58 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_06830 8d3ce608e2874f84b5b9a0a99d17ffe2 349 Gene3D G3DSA:3.40.50.150 57 340 3.1E-73 T 13-10-2018 CDG55_14420 e6dd25f009df4e4541973b8282aa5a28 130 Pfam PF04247 Invasion gene expression up-regulator, SirB 5 127 1.1E-12 T 13-10-2018 IPR007360 Invasion gene expression up-regulator, SirB CDG55_02210 647954c72c62d70a0d4c4b94c171cdae 214 Pfam PF04116 Fatty acid hydroxylase superfamily 5 154 5.0E-8 T 13-10-2018 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0008610|GO:0016491|GO:0055114 CDG55_08970 9b952193b966fad6162006a96484ae0a 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 2.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_08970 9b952193b966fad6162006a96484ae0a 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 2.3E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_08970 9b952193b966fad6162006a96484ae0a 213 SUPERFAMILY SSF46689 12 83 1.18E-18 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_08970 9b952193b966fad6162006a96484ae0a 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 70 2.1E-15 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_08970 9b952193b966fad6162006a96484ae0a 213 Gene3D G3DSA:1.10.10.60 5 70 8.4E-25 T 13-10-2018 CDG55_08970 9b952193b966fad6162006a96484ae0a 213 Gene3D G3DSA:1.10.357.10 86 213 1.8E-17 T 13-10-2018 CDG55_09235 206b18e3506552c15fb4579a56270363 439 SUPERFAMILY SSF103473 9 427 3.66E-35 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_09235 206b18e3506552c15fb4579a56270363 439 Pfam PF07690 Major Facilitator Superfamily 17 311 6.6E-19 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_09235 206b18e3506552c15fb4579a56270363 439 Gene3D G3DSA:1.20.1250.20 7 424 9.2E-32 T 13-10-2018 CDG55_05720 f48cba11d2b35fbdb6a1698b77c531c9 211 Pfam PF09997 Predicted membrane protein (DUF2238) 42 191 6.4E-45 T 13-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 CDG55_00310 6aacb0693e033409c84b56fc16f863b0 73 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 67 2.7E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_00310 6aacb0693e033409c84b56fc16f863b0 73 SUPERFAMILY SSF47413 13 67 1.48E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_00310 6aacb0693e033409c84b56fc16f863b0 73 Gene3D G3DSA:1.10.260.40 1 71 1.4E-8 T 13-10-2018 CDG55_00725 6aacb0693e033409c84b56fc16f863b0 73 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 67 2.7E-17 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_00725 6aacb0693e033409c84b56fc16f863b0 73 SUPERFAMILY SSF47413 13 67 1.48E-7 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_00725 6aacb0693e033409c84b56fc16f863b0 73 Gene3D G3DSA:1.10.260.40 1 71 1.4E-8 T 13-10-2018 CDG55_06750 ad181724f13b78ea91cf1ed3782ecfbb 354 Pfam PF01661 Macro domain 18 129 8.7E-21 T 13-10-2018 IPR002589 Macro domain CDG55_06750 ad181724f13b78ea91cf1ed3782ecfbb 354 SUPERFAMILY SSF52949 1 148 1.43E-45 T 13-10-2018 CDG55_06750 ad181724f13b78ea91cf1ed3782ecfbb 354 Gene3D G3DSA:3.40.220.10 1 148 1.5E-44 T 13-10-2018 CDG55_06750 ad181724f13b78ea91cf1ed3782ecfbb 354 SMART SM00506 1 132 9.3E-19 T 13-10-2018 IPR002589 Macro domain CDG55_04075 d9d4a514d7b09a5ffd439536c1831334 229 Pfam PF01634 ATP phosphoribosyltransferase 70 221 4.3E-49 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CDG55_04075 d9d4a514d7b09a5ffd439536c1831334 229 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 20 225 54.762 T 13-10-2018 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 CDG55_04075 d9d4a514d7b09a5ffd439536c1831334 229 Gene3D G3DSA:3.40.190.10 22 212 3.3E-70 T 13-10-2018 CDG55_04075 d9d4a514d7b09a5ffd439536c1831334 229 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 21 201 1.3E-57 T 13-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 CDG55_04075 d9d4a514d7b09a5ffd439536c1831334 229 Gene3D G3DSA:3.40.190.10 112 193 3.3E-70 T 13-10-2018 CDG55_04075 d9d4a514d7b09a5ffd439536c1831334 229 SUPERFAMILY SSF53850 19 224 8.03E-65 T 13-10-2018 CDG55_05005 d729a661a8caf1c882eeb88509acd0a4 150 Pfam PF03653 Uncharacterised protein family (UPF0093) 6 148 9.2E-49 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 CDG55_05005 d729a661a8caf1c882eeb88509acd0a4 150 PIRSF PIRSF004638 1 150 1.2E-49 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 CDG55_05005 d729a661a8caf1c882eeb88509acd0a4 150 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 7 148 3.9E-41 T 13-10-2018 IPR005265 Uncharacterised protein family UPF0093 CDG55_08015 cd2cabcba48113b4497ee966621227fe 345 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 328 2.3E-94 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDG55_08015 cd2cabcba48113b4497ee966621227fe 345 PIRSF PIRSF001359 1 329 1.1E-81 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDG55_08015 cd2cabcba48113b4497ee966621227fe 345 SUPERFAMILY SSF51569 3 328 1.11E-104 T 13-10-2018 CDG55_08015 cd2cabcba48113b4497ee966621227fe 345 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 1.1E-90 T 13-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 CDG55_08015 cd2cabcba48113b4497ee966621227fe 345 Gene3D G3DSA:3.20.20.70 1 345 1.2E-152 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_08015 cd2cabcba48113b4497ee966621227fe 345 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 344 1.3E-193 T 13-10-2018 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 CDG55_05375 512371f1a21c0a9b84432484d430f1ad 222 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 87 155 2.9E-15 T 13-10-2018 CDG55_05375 512371f1a21c0a9b84432484d430f1ad 222 Gene3D G3DSA:3.40.50.150 53 174 9.8E-21 T 13-10-2018 CDG55_05375 512371f1a21c0a9b84432484d430f1ad 222 SUPERFAMILY SSF53335 64 218 9.21E-22 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_02745 36a7e9e6ceaa0c58642c80129fbdfde4 323 Gene3D G3DSA:3.40.50.1820 34 323 1.4E-82 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_02745 36a7e9e6ceaa0c58642c80129fbdfde4 323 SUPERFAMILY SSF53474 37 289 8.11E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_02745 36a7e9e6ceaa0c58642c80129fbdfde4 323 Pfam PF00561 alpha/beta hydrolase fold 42 144 5.1E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_10150 86ad3308219e85df21bb825226acb9ef 356 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 2.1E-121 T 13-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 CDG55_10150 86ad3308219e85df21bb825226acb9ef 356 Gene3D G3DSA:3.40.50.300 2 294 1.0E-81 T 13-10-2018 CDG55_10150 86ad3308219e85df21bb825226acb9ef 356 SMART SM00382 27 214 6.0E-21 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_10150 86ad3308219e85df21bb825226acb9ef 356 SUPERFAMILY SSF52540 3 244 1.95E-86 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10150 86ad3308219e85df21bb825226acb9ef 356 SUPERFAMILY SSF50331 240 348 3.17E-6 T 13-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal CDG55_10150 86ad3308219e85df21bb825226acb9ef 356 Pfam PF00005 ABC transporter 18 164 3.8E-37 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_09965 ab780bcea08451061c1bbae042e7558e 240 Gene3D G3DSA:3.40.1280.10 72 240 7.8E-53 T 13-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CDG55_09965 ab780bcea08451061c1bbae042e7558e 240 PIRSF PIRSF015601 1 239 1.4E-62 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CDG55_09965 ab780bcea08451061c1bbae042e7558e 240 SUPERFAMILY SSF88697 1 68 1.32E-15 T 13-10-2018 IPR015947 PUA-like superfamily CDG55_09965 ab780bcea08451061c1bbae042e7558e 240 SUPERFAMILY SSF75217 73 238 2.53E-47 T 13-10-2018 IPR029028 Alpha/beta knot methyltransferases CDG55_09965 ab780bcea08451061c1bbae042e7558e 240 Pfam PF04452 RNA methyltransferase 17 235 7.1E-69 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CDG55_09965 ab780bcea08451061c1bbae042e7558e 240 Gene3D G3DSA:2.40.240.20 1 67 1.4E-19 T 13-10-2018 CDG55_09965 ab780bcea08451061c1bbae042e7558e 240 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 1 237 1.4E-60 T 13-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 SUPERFAMILY SSF51905 2 313 1.4E-52 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 7.1E-38 T 13-10-2018 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 7.1E-38 T 13-10-2018 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 7.1E-38 T 13-10-2018 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 7.1E-38 T 13-10-2018 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 7.1E-38 T 13-10-2018 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 312 1.0E-119 T 13-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 Gene3D G3DSA:3.50.50.60 117 243 2.7E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 293 312 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 198 214 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 237 258 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 2.3E-78 T 13-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 Gene3D G3DSA:3.50.50.60 8 311 2.7E-121 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05065 8aec3ee1be7a9eff3886e9d224c625a2 316 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 300 2.9E-49 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_13800 9f0e9c08d1b501d005ef77479ce79d66 90 SUPERFAMILY SSF111148 1 88 4.58E-35 T 13-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 CDG55_13800 9f0e9c08d1b501d005ef77479ce79d66 90 Gene3D G3DSA:1.10.3880.10 1 90 8.6E-34 T 13-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 CDG55_13800 9f0e9c08d1b501d005ef77479ce79d66 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 25.244 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 CDG55_13800 9f0e9c08d1b501d005ef77479ce79d66 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 73 2.0E-33 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 CDG55_13800 9f0e9c08d1b501d005ef77479ce79d66 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 3.5E-38 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 CDG55_13800 9f0e9c08d1b501d005ef77479ce79d66 90 PIRSF PIRSF029827 1 90 1.4E-37 T 13-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 CDG55_11795 5e00fea58dc15cbb78f6e093bcbc6cbb 195 Gene3D G3DSA:1.20.1200.10 17 189 1.5E-54 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDG55_11795 5e00fea58dc15cbb78f6e093bcbc6cbb 195 SUPERFAMILY SSF89028 7 185 3.53E-56 T 13-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDG55_11795 5e00fea58dc15cbb78f6e093bcbc6cbb 195 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 185 2.8E-51 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDG55_11795 5e00fea58dc15cbb78f6e093bcbc6cbb 195 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 26 186 2.0E-76 T 13-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDG55_11795 5e00fea58dc15cbb78f6e093bcbc6cbb 195 Pfam PF01923 Cobalamin adenosyltransferase 8 172 1.9E-54 T 13-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 CDG55_10010 c0f723b4150438ff3492aee912d4483e 310 Pfam PF13737 Transposase DDE domain 23 130 8.4E-42 T 13-10-2018 IPR025668 Transposase DDE domain CDG55_06605 6c62f245890d2aab8ce558a9f132c5a4 100 Pfam PF04328 Selenoprotein, putative 37 100 9.9E-23 T 13-10-2018 IPR007423 Selenoprotein, putative CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 208 216 1.7E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 1.7E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 192 202 1.7E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 1.7E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 1.7E-22 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 319 5.1E-113 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 Gene3D G3DSA:3.40.50.620 1 327 1.3E-151 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 SUPERFAMILY SSF48163 313 471 1.57E-33 T 13-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 468 6.4E-143 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 Gene3D G3DSA:1.10.10.350 370 493 2.3E-29 T 13-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 2 470 30.318 T 13-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 CDG55_02405 3f09ba09b1aeb8ecda012750510374d0 502 SUPERFAMILY SSF52374 2 307 2.94E-113 T 13-10-2018 CDG55_11170 6d11285d9100284026efcd1e45ae10c3 415 Pfam PF13000 Acetyl-coenzyme A transporter 1 107 157 2.7E-6 T 13-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 CDG55_11170 6d11285d9100284026efcd1e45ae10c3 415 Pfam PF13000 Acetyl-coenzyme A transporter 1 9 94 2.3E-17 T 13-10-2018 IPR024371 Acetyl-coenzyme A transporter 1-like GO:0008521|GO:0016021 Reactome: R-HSA-425397|Reactome: R-HSA-5619061 CDG55_11170 6d11285d9100284026efcd1e45ae10c3 415 SUPERFAMILY SSF103473 5 410 4.32E-27 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_11170 6d11285d9100284026efcd1e45ae10c3 415 Gene3D G3DSA:1.20.1250.20 4 204 4.1E-8 T 13-10-2018 CDG55_11170 6d11285d9100284026efcd1e45ae10c3 415 Gene3D G3DSA:1.20.1250.20 215 415 8.5E-9 T 13-10-2018 CDG55_10020 10bd29df0b7b8ff7b0d341bde6c842e4 449 Gene3D G3DSA:1.20.1250.20 16 211 9.3E-40 T 13-10-2018 CDG55_10020 10bd29df0b7b8ff7b0d341bde6c842e4 449 Pfam PF07690 Major Facilitator Superfamily 32 392 3.4E-27 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_10020 10bd29df0b7b8ff7b0d341bde6c842e4 449 SUPERFAMILY SSF103473 15 433 4.05E-55 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_10020 10bd29df0b7b8ff7b0d341bde6c842e4 449 Gene3D G3DSA:1.20.1250.20 231 439 2.2E-30 T 13-10-2018 CDG55_02530 736a03b684917baa78d1e06190ff969b 186 Gene3D G3DSA:3.10.310.50 33 182 2.2E-41 T 13-10-2018 CDG55_02530 736a03b684917baa78d1e06190ff969b 186 Pfam PF04536 TPM domain 38 161 3.2E-13 T 13-10-2018 IPR007621 TPM domain CDG55_08365 1377755915d9bda575d900e43de1aa81 362 SUPERFAMILY SSF103088 70 196 1.27E-10 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_08365 1377755915d9bda575d900e43de1aa81 362 Pfam PF00691 OmpA family 81 190 4.1E-9 T 13-10-2018 IPR006665 OmpA-like domain CDG55_08365 1377755915d9bda575d900e43de1aa81 362 Gene3D G3DSA:3.30.1330.60 41 198 1.7E-14 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_02815 1303e2159d5304df4acff5b2a1682289 290 Pfam PF14257 Domain of unknown function (DUF4349) 19 152 1.1E-14 T 13-10-2018 IPR025645 Domain of unknown function DUF4349 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 Gene3D G3DSA:3.20.20.70 7 297 2.0E-122 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 SMART SM01130 7 295 1.1E-149 T 13-10-2018 IPR002220 DapA-like GO:0016829 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 Pfam PF00701 Dihydrodipicolinate synthetase family 8 293 2.0E-106 T 13-10-2018 IPR002220 DapA-like GO:0016829 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 10 292 8.1E-114 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 SUPERFAMILY SSF51569 7 295 7.33E-108 T 13-10-2018 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 41 62 4.0E-36 T 13-10-2018 IPR002220 DapA-like GO:0016829 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 77 95 4.0E-36 T 13-10-2018 IPR002220 DapA-like GO:0016829 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 134 151 4.0E-36 T 13-10-2018 IPR002220 DapA-like GO:0016829 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 109 125 4.0E-36 T 13-10-2018 IPR002220 DapA-like GO:0016829 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 PIRSF PIRSF001365 4 297 1.1E-98 T 13-10-2018 IPR002220 DapA-like GO:0016829 CDG55_01460 0900807741fa32b16020bf284f6d9061 297 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 7 293 66.913 T 13-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 221 241 4.4E-31 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 179 201 4.4E-31 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 348 359 4.4E-31 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 99 113 4.4E-31 T 13-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 SMART SM00839 190 420 8.0E-92 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 Gene3D G3DSA:3.40.50.720 188 423 6.4E-85 T 13-10-2018 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 PIRSF PIRSF000185 9 423 1.7E-161 T 13-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 188 420 3.4E-73 T 13-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 SUPERFAMILY SSF51735 188 423 3.77E-74 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 42 169 1.2E-55 T 13-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 Gene3D G3DSA:3.40.50.10860 44 187 1.1E-64 T 13-10-2018 CDG55_10650 f8f19df355e7234369ed2a489cdf8ab5 424 SUPERFAMILY SSF53223 10 190 5.12E-68 T 13-10-2018 CDG55_14575 9915491aeeba4ca9f527c41fc20b93ab 81 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 1 72 2.0E-14 T 13-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ CDG55_14575 9915491aeeba4ca9f527c41fc20b93ab 81 Pfam PF04221 RelB antitoxin 1 69 1.1E-14 T 13-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ CDG55_14575 9915491aeeba4ca9f527c41fc20b93ab 81 Gene3D G3DSA:1.10.1220.10 1 81 4.9E-30 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 Pfam PF00849 RNA pseudouridylate synthase 67 199 2.7E-16 T 13-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 Gene3D G3DSA:3.30.70.1560 134 217 1.8E-48 T 13-10-2018 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 Pfam PF01479 S4 domain 4 47 5.0E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 SMART SM00363 3 64 1.8E-8 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 71 231 1.6E-52 T 13-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 Gene3D G3DSA:3.10.290.10 1 58 5.8E-19 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 Gene3D G3DSA:3.30.70.580 68 235 1.8E-48 T 13-10-2018 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 SUPERFAMILY SSF55174 5 97 2.36E-16 T 13-10-2018 CDG55_04690 2a5b712f8400af8cd5ef104722bd2bbe 311 SUPERFAMILY SSF55120 66 235 1.51E-40 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 Pfam PF00890 FAD binding domain 19 436 1.8E-113 T 13-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 Gene3D G3DSA:1.20.58.100 467 579 1.3E-30 T 13-10-2018 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 SUPERFAMILY SSF51905 14 470 5.99E-80 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 SUPERFAMILY SSF56425 246 364 1.29E-41 T 13-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 Pfam PF02910 Fumarate reductase flavoprotein C-term 495 630 2.4E-34 T 13-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 SUPERFAMILY SSF46977 486 631 6.02E-38 T 13-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 19 629 2.5E-225 T 13-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 Gene3D G3DSA:4.10.80.40 591 631 2.1E-6 T 13-10-2018 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 17 631 2.8E-260 T 13-10-2018 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10905 fa1bff665e515f8020b0025b39f29d7e 631 PIRSF PIRSF000171 8 611 2.5E-33 T 13-10-2018 CDG55_00545 e03aa62e7cc5760cfd42ab4ae9d38f88 103 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 41 96 1.4E-18 T 13-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system CDG55_10465 4c7a09879515fbf4900b1491a36c2e94 284 Gene3D G3DSA:3.10.310.10 117 266 5.6E-107 T 13-10-2018 CDG55_10465 4c7a09879515fbf4900b1491a36c2e94 284 SUPERFAMILY SSF54506 2 279 1.57E-56 T 13-10-2018 CDG55_10465 4c7a09879515fbf4900b1491a36c2e94 284 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 277 9.0E-93 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDG55_10465 4c7a09879515fbf4900b1491a36c2e94 284 Pfam PF01678 Diaminopimelate epimerase 5 125 7.4E-32 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDG55_10465 4c7a09879515fbf4900b1491a36c2e94 284 Pfam PF01678 Diaminopimelate epimerase 158 271 9.7E-28 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDG55_10465 4c7a09879515fbf4900b1491a36c2e94 284 Gene3D G3DSA:3.10.310.10 4 274 5.6E-107 T 13-10-2018 CDG55_10465 4c7a09879515fbf4900b1491a36c2e94 284 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 279 38.759 T 13-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 CDG55_01915 d019c90cedfb898f929481489c348f2c 323 SUPERFAMILY SSF50182 143 206 3.6E-16 T 13-10-2018 IPR010920 LSM domain superfamily CDG55_01915 d019c90cedfb898f929481489c348f2c 323 Gene3D G3DSA:2.30.30.60 159 208 2.3E-14 T 13-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily CDG55_01915 d019c90cedfb898f929481489c348f2c 323 SUPERFAMILY SSF82689 212 310 3.79E-24 T 13-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 CDG55_01915 d019c90cedfb898f929481489c348f2c 323 Pfam PF00924 Mechanosensitive ion channel 106 300 6.9E-44 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDG55_01915 d019c90cedfb898f929481489c348f2c 323 Gene3D G3DSA:3.30.70.100 210 304 1.5E-21 T 13-10-2018 CDG55_01915 d019c90cedfb898f929481489c348f2c 323 SUPERFAMILY SSF82861 57 142 1.57E-8 T 13-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 CDG55_01600 d369e23fd729e5b697156d920efd529b 384 Gene3D G3DSA:3.90.1150.10 17 379 1.6E-125 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_01600 d369e23fd729e5b697156d920efd529b 384 SUPERFAMILY SSF53383 4 383 9.38E-95 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_01600 d369e23fd729e5b697156d920efd529b 384 Gene3D G3DSA:3.40.640.10 41 280 1.6E-125 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_01600 d369e23fd729e5b697156d920efd529b 384 Pfam PF00155 Aminotransferase class I and II 29 377 1.7E-60 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDG55_10780 3adaa2666c7e332099a214db232a814a 284 Pfam PF00809 Pterin binding enzyme 26 265 2.8E-84 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10780 3adaa2666c7e332099a214db232a814a 284 Gene3D G3DSA:3.20.20.20 3 283 1.0E-112 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10780 3adaa2666c7e332099a214db232a814a 284 SUPERFAMILY SSF51717 11 280 1.22E-101 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_10780 3adaa2666c7e332099a214db232a814a 284 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 24 280 7.4E-101 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 CDG55_03215 ca856236dc39419630b3c2e5826989ea 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 8.4E-21 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03215 ca856236dc39419630b3c2e5826989ea 38 Pfam PF00444 Ribosomal protein L36 1 38 2.5E-19 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03215 ca856236dc39419630b3c2e5826989ea 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 13-10-2018 CDG55_03215 ca856236dc39419630b3c2e5826989ea 38 SUPERFAMILY SSF57840 1 38 1.11E-16 T 13-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03215 ca856236dc39419630b3c2e5826989ea 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 17.47 T 13-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11775 47a58949e7be63ebcf958373cba34d61 382 Pfam PF00990 Diguanylate cyclase, GGDEF domain 219 375 1.0E-47 T 13-10-2018 IPR000160 GGDEF domain CDG55_11775 47a58949e7be63ebcf958373cba34d61 382 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 213 377 2.4E-56 T 13-10-2018 IPR000160 GGDEF domain CDG55_11775 47a58949e7be63ebcf958373cba34d61 382 SUPERFAMILY SSF55073 222 377 1.49E-47 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_11775 47a58949e7be63ebcf958373cba34d61 382 SMART SM00267 206 379 1.4E-54 T 13-10-2018 IPR000160 GGDEF domain CDG55_11775 47a58949e7be63ebcf958373cba34d61 382 Gene3D G3DSA:3.30.70.270 211 380 1.4E-54 T 13-10-2018 CDG55_00895 867a407ae51a1a10c57bba50c854377c 313 SUPERFAMILY SSF52540 16 258 2.59E-25 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00895 867a407ae51a1a10c57bba50c854377c 313 Gene3D G3DSA:3.40.50.300 18 248 4.0E-28 T 13-10-2018 CDG55_00895 867a407ae51a1a10c57bba50c854377c 313 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 79 226 2.0E-14 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_00895 867a407ae51a1a10c57bba50c854377c 313 SMART SM00382 75 229 1.4E-6 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 Pfam PF13538 UvrD-like helicase C-terminal domain 527 571 1.1E-12 T 13-10-2018 IPR027785 UvrD-like helicase C-terminal domain CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 Pfam PF13604 AAA domain 146 338 7.6E-33 T 13-10-2018 CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 Gene3D G3DSA:3.40.50.300 335 465 1.8E-13 T 13-10-2018 CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 Gene3D G3DSA:3.40.50.300 466 587 6.0E-24 T 13-10-2018 CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 82 597 4.8E-126 T 13-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 SMART SM00382 158 366 2.0E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 Gene3D G3DSA:3.40.50.300 112 334 7.3E-53 T 13-10-2018 CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 22 596 41.204 T 13-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 CDG55_13245 b42fa07a9c32047f1d5e3d1e11cbec2f 603 SUPERFAMILY SSF52540 146 579 7.16E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 Gene3D G3DSA:1.10.287.70 27 249 3.0E-58 T 13-10-2018 CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 PRINTS PR00169 Potassium channel signature 21 49 2.0E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 PRINTS PR00169 Potassium channel signature 63 86 2.0E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 PRINTS PR00169 Potassium channel signature 130 156 2.0E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 PRINTS PR00169 Potassium channel signature 159 182 2.0E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 PRINTS PR00169 Potassium channel signature 219 245 2.0E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 PRINTS PR00169 Potassium channel signature 190 212 2.0E-34 T 13-10-2018 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 Pfam PF00520 Ion transport protein 28 246 1.2E-27 T 13-10-2018 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 CDG55_09190 26906472d3a949fc66014ece7b4d2fa1 327 SUPERFAMILY SSF81324 26 246 4.58E-49 T 13-10-2018 CDG55_13310 567141ead06d83a255e200fa8c7320d3 500 Gene3D G3DSA:3.40.50.300 272 494 3.8E-12 T 13-10-2018 CDG55_13310 567141ead06d83a255e200fa8c7320d3 500 Pfam PF13361 UvrD-like helicase C-terminal domain 425 477 5.2E-10 T 13-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 CDG55_13310 567141ead06d83a255e200fa8c7320d3 500 SUPERFAMILY SSF52540 9 481 2.73E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13310 567141ead06d83a255e200fa8c7320d3 500 Pfam PF13245 AAA domain 13 252 4.8E-13 T 13-10-2018 CDG55_05665 c0fa0f4c62089d0f266b640be7af3f27 233 SUPERFAMILY SSF46689 28 102 7.83E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_05665 c0fa0f4c62089d0f266b640be7af3f27 233 Gene3D G3DSA:1.10.10.60 28 78 6.9E-16 T 13-10-2018 CDG55_05665 c0fa0f4c62089d0f266b640be7af3f27 233 Pfam PF00440 Bacterial regulatory proteins, tetR family 52 88 1.5E-8 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_05665 c0fa0f4c62089d0f266b640be7af3f27 233 Gene3D G3DSA:1.10.357.10 79 232 5.5E-28 T 13-10-2018 CDG55_02525 e290d81dd44ba397dda015ded4262e62 353 Gene3D G3DSA:3.10.310.50 81 220 5.4E-45 T 13-10-2018 CDG55_02525 e290d81dd44ba397dda015ded4262e62 353 Pfam PF04536 TPM domain 92 215 8.9E-38 T 13-10-2018 IPR007621 TPM domain CDG55_14335 925563872e88d8dc708ef5f1bb54b582 201 Gene3D G3DSA:3.30.70.1070 122 201 9.5E-15 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CDG55_14335 925563872e88d8dc708ef5f1bb54b582 201 Pfam PF05036 Sporulation related domain 127 200 2.6E-17 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 CDG55_14335 925563872e88d8dc708ef5f1bb54b582 201 SUPERFAMILY SSF110997 125 200 6.54E-16 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CDG55_14490 891d7185e2946f24fcf0b8d9643f366d 1161 SUPERFAMILY SSF52540 428 909 1.54E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14490 891d7185e2946f24fcf0b8d9643f366d 1161 TIGRFAM TIGR02562 cas3_yersinia: CRISPR-associated helicase Cas3, subtype I-F/YPEST 1 1158 7.2E-300 T 13-10-2018 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type CDG55_14490 891d7185e2946f24fcf0b8d9643f366d 1161 Gene3D G3DSA:1.10.3210.30 80 284 8.8E-9 T 13-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily CDG55_06255 34c1b70486f1558eeb4b9d04db2564bb 534 SUPERFAMILY SSF51621 15 515 4.08E-125 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CDG55_06255 34c1b70486f1558eeb4b9d04db2564bb 534 Pfam PF00463 Isocitrate lyase family 317 396 1.8E-11 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CDG55_06255 34c1b70486f1558eeb4b9d04db2564bb 534 Pfam PF00463 Isocitrate lyase family 98 270 1.1E-24 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CDG55_06255 34c1b70486f1558eeb4b9d04db2564bb 534 Pfam PF00463 Isocitrate lyase family 432 521 1.9E-10 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CDG55_06255 34c1b70486f1558eeb4b9d04db2564bb 534 PIRSF PIRSF001362 286 410 4.5E-13 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CDG55_06255 34c1b70486f1558eeb4b9d04db2564bb 534 PIRSF PIRSF001362 415 534 8.5E-7 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CDG55_06255 34c1b70486f1558eeb4b9d04db2564bb 534 PIRSF PIRSF001362 3 275 4.0E-31 T 13-10-2018 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 CDG55_00435 c359b7858f5a43fa0cb6fe7cb3bcd67b 212 Gene3D G3DSA:3.20.20.70 2 212 9.6E-64 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_00435 c359b7858f5a43fa0cb6fe7cb3bcd67b 212 SUPERFAMILY SSF51366 4 209 3.92E-56 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CDG55_00435 c359b7858f5a43fa0cb6fe7cb3bcd67b 212 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 3 212 37.199 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CDG55_00435 c359b7858f5a43fa0cb6fe7cb3bcd67b 212 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 5 205 2.3E-44 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CDG55_07935 ce558e3fb06ae4eebac7f1f565d9f6e8 103 SUPERFAMILY SSF46785 12 100 1.59E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_07935 ce558e3fb06ae4eebac7f1f565d9f6e8 103 Gene3D G3DSA:1.10.10.10 6 102 8.1E-24 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07935 ce558e3fb06ae4eebac7f1f565d9f6e8 103 SMART SM00418 19 97 5.9E-18 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_07935 ce558e3fb06ae4eebac7f1f565d9f6e8 103 Pfam PF01022 Bacterial regulatory protein, arsR family 28 71 2.1E-11 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_07935 ce558e3fb06ae4eebac7f1f565d9f6e8 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 3.4E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_07935 ce558e3fb06ae4eebac7f1f565d9f6e8 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 21 36 3.4E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_07935 ce558e3fb06ae4eebac7f1f565d9f6e8 103 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 3.4E-9 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_04215 b504bd49bf17f7d09f8a44c0bd0bb682 162 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 7 158 43.17 T 13-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 CDG55_04215 b504bd49bf17f7d09f8a44c0bd0bb682 162 Gene3D G3DSA:3.30.160.70 3 74 3.1E-19 T 13-10-2018 CDG55_04215 b504bd49bf17f7d09f8a44c0bd0bb682 162 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 3 75 5.0E-11 T 13-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CDG55_04215 b504bd49bf17f7d09f8a44c0bd0bb682 162 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 79 158 5.3E-31 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDG55_04215 b504bd49bf17f7d09f8a44c0bd0bb682 162 SUPERFAMILY SSF46767 77 158 4.84E-31 T 13-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 CDG55_04215 b504bd49bf17f7d09f8a44c0bd0bb682 162 Gene3D G3DSA:1.10.10.10 75 160 3.1E-35 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04215 b504bd49bf17f7d09f8a44c0bd0bb682 162 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 78 157 3.2E-34 T 13-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 CDG55_04215 b504bd49bf17f7d09f8a44c0bd0bb682 162 SUPERFAMILY SSF53155 3 83 2.55E-20 T 13-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 193 6.2E-4 T 13-10-2018 CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.1E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.1E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.1E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.1E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.1E-27 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 SUPERFAMILY SSF51735 5 264 7.72E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 Pfam PF00106 short chain dehydrogenase 10 195 5.2E-49 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 Gene3D G3DSA:3.40.50.720 1 268 2.6E-64 T 13-10-2018 CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_11090 e5a57c03ac70648e7e5058d0ef7dce01 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.3E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09645 8d75ab16923b1a3ba1acb31992353c82 147 PIRSF PIRSF037663 1 143 1.6E-11 T 13-10-2018 IPR017255 Acetyltransferase, GNAT, predicted CDG55_09645 8d75ab16923b1a3ba1acb31992353c82 147 SUPERFAMILY SSF55729 1 142 8.18E-33 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_09645 8d75ab16923b1a3ba1acb31992353c82 147 Pfam PF00583 Acetyltransferase (GNAT) family 31 133 1.0E-16 T 13-10-2018 IPR000182 GNAT domain CDG55_09645 8d75ab16923b1a3ba1acb31992353c82 147 Gene3D G3DSA:3.40.630.30 3 139 1.9E-35 T 13-10-2018 CDG55_14745 36a25a0d9853ffc17e71dd544bf12ac8 312 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 223 2.6E-34 T 13-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 CDG55_14745 36a25a0d9853ffc17e71dd544bf12ac8 312 Gene3D G3DSA:3.40.50.720 1 310 8.7E-59 T 13-10-2018 CDG55_14745 36a25a0d9853ffc17e71dd544bf12ac8 312 SUPERFAMILY SSF51735 1 310 1.09E-63 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_02465 af14d114d0c9d2bb13ec5516a54173b9 207 Pfam PF05137 Fimbrial assembly protein (PilN) 100 187 1.6E-17 T 13-10-2018 IPR007813 Fimbrial assembly PilN CDG55_11600 5d522db635c687238cc00d37766756ea 356 Gene3D G3DSA:3.30.1330.60 224 345 2.7E-44 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_11600 5d522db635c687238cc00d37766756ea 356 SUPERFAMILY SSF56925 30 200 1.12E-16 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CDG55_11600 5d522db635c687238cc00d37766756ea 356 Pfam PF13505 Outer membrane protein beta-barrel domain 7 193 5.0E-11 T 13-10-2018 IPR027385 Outer membrane protein beta-barrel CDG55_11600 5d522db635c687238cc00d37766756ea 356 Pfam PF00691 OmpA family 239 335 1.1E-23 T 13-10-2018 IPR006665 OmpA-like domain CDG55_11600 5d522db635c687238cc00d37766756ea 356 Gene3D G3DSA:2.40.160.20 13 195 1.9E-17 T 13-10-2018 CDG55_11600 5d522db635c687238cc00d37766756ea 356 PRINTS PR01021 OMPA domain signature 285 301 3.2E-11 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_11600 5d522db635c687238cc00d37766756ea 356 PRINTS PR01021 OMPA domain signature 270 285 3.2E-11 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_11600 5d522db635c687238cc00d37766756ea 356 PRINTS PR01021 OMPA domain signature 240 262 3.2E-11 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_11600 5d522db635c687238cc00d37766756ea 356 SUPERFAMILY SSF103088 211 338 1.44E-34 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_06970 c5495dd63b7e5fcae5e630a1e7be8df4 216 PIRSF PIRSF006324 2 215 1.7E-47 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_06970 c5495dd63b7e5fcae5e630a1e7be8df4 216 Pfam PF01810 LysE type translocator 17 213 1.2E-40 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_13690 9f9fe41e630f80966ab70061bbc2543c 146 Gene3D G3DSA:1.20.5.1030 88 144 8.2E-15 T 13-10-2018 IPR038379 SecE superfamily CDG55_13690 9f9fe41e630f80966ab70061bbc2543c 146 PRINTS PR01650 Bacterial translocase SecE signature 66 87 2.9E-13 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CDG55_13690 9f9fe41e630f80966ab70061bbc2543c 146 PRINTS PR01650 Bacterial translocase SecE signature 87 107 2.9E-13 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CDG55_13690 9f9fe41e630f80966ab70061bbc2543c 146 PRINTS PR01650 Bacterial translocase SecE signature 111 131 2.9E-13 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CDG55_13690 9f9fe41e630f80966ab70061bbc2543c 146 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 94 144 6.2E-16 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDG55_13690 9f9fe41e630f80966ab70061bbc2543c 146 Hamap MF_00422 Protein translocase subunit SecE [secE]. 88 143 11.978 T 13-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 CDG55_13690 9f9fe41e630f80966ab70061bbc2543c 146 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 91 145 3.6E-17 T 13-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 CDG55_11325 cd68c0ef5f15508080590af982b84d3e 105 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 30 100 1.2E-14 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CDG55_11325 cd68c0ef5f15508080590af982b84d3e 105 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 14 105 5.7E-27 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CDG55_11325 cd68c0ef5f15508080590af982b84d3e 105 SUPERFAMILY SSF141000 13 103 1.44E-25 T 13-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 CDG55_11325 cd68c0ef5f15508080590af982b84d3e 105 Gene3D G3DSA:1.10.20.60 10 103 6.9E-20 T 13-10-2018 CDG55_11325 cd68c0ef5f15508080590af982b84d3e 105 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 12 105 21.281 T 13-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 CDG55_01340 ecb61be4ce81c645bd029d611876af44 207 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 60 2.2E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_01340 ecb61be4ce81c645bd029d611876af44 207 SUPERFAMILY SSF46689 7 87 3.59E-17 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_01340 ecb61be4ce81c645bd029d611876af44 207 Gene3D G3DSA:1.10.357.10 1 202 2.4E-39 T 13-10-2018 CDG55_01340 ecb61be4ce81c645bd029d611876af44 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 6.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_01340 ecb61be4ce81c645bd029d611876af44 207 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 6.3E-9 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_01100 d1e7ad11ed932218eaecd69187a90220 127 SUPERFAMILY SSF48295 13 60 1.46E-11 T 13-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 CDG55_01100 d1e7ad11ed932218eaecd69187a90220 127 Pfam PF01527 Transposase 14 63 1.3E-10 T 13-10-2018 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 CDG55_02455 09228f32805996f2384e4b1d945e1c6b 850 Pfam PF00905 Penicillin binding protein transpeptidase domain 424 597 2.1E-25 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDG55_02455 09228f32805996f2384e4b1d945e1c6b 850 Gene3D G3DSA:2.40.50.140 322 416 2.5E-25 T 13-10-2018 CDG55_02455 09228f32805996f2384e4b1d945e1c6b 850 SUPERFAMILY SSF53955 54 261 7.31E-75 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_02455 09228f32805996f2384e4b1d945e1c6b 850 Gene3D G3DSA:1.10.3810.10 55 249 2.8E-74 T 13-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_02455 09228f32805996f2384e4b1d945e1c6b 850 SUPERFAMILY SSF56601 217 763 4.73E-122 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_02455 09228f32805996f2384e4b1d945e1c6b 850 Pfam PF00912 Transglycosylase 61 235 1.5E-61 T 13-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_02455 09228f32805996f2384e4b1d945e1c6b 850 Pfam PF17092 Penicillin-binding protein OB-like domain 325 419 1.0E-17 T 13-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_02455 09228f32805996f2384e4b1d945e1c6b 850 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 74 752 1.1E-180 T 13-10-2018 CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 Pfam PF12848 ABC transporter 230 304 7.3E-11 T 13-10-2018 IPR032781 ABC-transporter extension domain CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 Gene3D G3DSA:3.40.50.300 287 552 9.6E-73 T 13-10-2018 CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 Gene3D G3DSA:3.40.50.300 1 286 1.6E-83 T 13-10-2018 CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 551 8.7E-287 T 13-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 SUPERFAMILY SSF52540 9 244 5.75E-49 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 Pfam PF00005 ABC transporter 22 191 5.9E-27 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 Pfam PF00005 ABC transporter 340 473 1.0E-22 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 SUPERFAMILY SSF52540 302 531 3.12E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 SMART SM00382 348 521 1.6E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_02335 6b7ef806e4383a4b12735df16fb00c30 553 SMART SM00382 31 242 7.6E-9 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_10360 9b9a902f6e620019de925138fc05369d 316 PIRSF PIRSF026649 7 292 3.1E-64 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CDG55_10360 9b9a902f6e620019de925138fc05369d 316 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 19 284 4.7E-36 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CDG55_08240 51dc8a3dd8043ccba125cba9676eac53 141 SUPERFAMILY SSF109604 2 121 1.57E-23 T 13-10-2018 CDG55_08240 51dc8a3dd8043ccba125cba9676eac53 141 Gene3D G3DSA:1.10.3210.10 1 141 2.4E-23 T 13-10-2018 CDG55_14950 c35f684e7740697fd318fe42d9a3085a 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 12 146 1.6E-17 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CDG55_14950 c35f684e7740697fd318fe42d9a3085a 160 SUPERFAMILY SSF54534 13 149 5.3E-36 T 13-10-2018 CDG55_14950 c35f684e7740697fd318fe42d9a3085a 160 Gene3D G3DSA:3.10.50.40 11 160 1.7E-38 T 13-10-2018 CDG55_07640 a97b43a7659298b51810f667be1b9646 230 Gene3D G3DSA:3.30.420.10 3 184 2.3E-20 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_07640 a97b43a7659298b51810f667be1b9646 230 SMART SM00479 2 170 2.9E-4 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CDG55_07640 a97b43a7659298b51810f667be1b9646 230 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 187 213 4.4E-5 T 13-10-2018 IPR024530 Putative quorum-sensing-regulated virulence factor CDG55_07640 a97b43a7659298b51810f667be1b9646 230 SUPERFAMILY SSF53098 3 192 8.18E-20 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_13000 71a447b1508f878de002c1966ffa4664 613 Pfam PF13193 AMP-binding enzyme C-terminal domain 486 565 1.0E-6 T 13-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain CDG55_13000 71a447b1508f878de002c1966ffa4664 613 Gene3D G3DSA:3.40.50.12780 34 470 2.3E-64 T 13-10-2018 CDG55_13000 71a447b1508f878de002c1966ffa4664 613 Gene3D G3DSA:3.30.300.30 473 580 1.4E-11 T 13-10-2018 CDG55_13000 71a447b1508f878de002c1966ffa4664 613 Pfam PF00501 AMP-binding enzyme 51 477 8.8E-62 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CDG55_13000 71a447b1508f878de002c1966ffa4664 613 SUPERFAMILY SSF56801 50 576 2.88E-96 T 13-10-2018 CDG55_08795 25f488cb740779e73446fe855f17b7cd 172 Gene3D G3DSA:3.40.50.300 2 169 1.1E-55 T 13-10-2018 CDG55_08795 25f488cb740779e73446fe855f17b7cd 172 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 166 1.1E-59 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 CDG55_08795 25f488cb740779e73446fe855f17b7cd 172 PIRSF PIRSF006135 1 171 1.1E-55 T 13-10-2018 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-6269|MetaCyc: PWY-7962|MetaCyc: PWY-7971|MetaCyc: PWY-7972 CDG55_08795 25f488cb740779e73446fe855f17b7cd 172 SUPERFAMILY SSF52540 3 169 2.55E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 365 381 6.9E-19 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 390 412 6.9E-19 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 157 6.9E-19 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 279 297 6.9E-19 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 234 252 6.9E-19 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 Pfam PF13806 Rieske-like [2Fe-2S] domain 14 117 8.6E-37 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 Gene3D G3DSA:3.50.50.60 247 372 1.4E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 137 415 1.0E-59 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 Gene3D G3DSA:2.102.10.10 8 120 4.5E-35 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 SUPERFAMILY SSF51905 275 439 3.45E-30 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 Gene3D G3DSA:3.50.50.60 139 421 1.4E-91 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 SUPERFAMILY SSF50022 13 121 3.7E-35 T 13-10-2018 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily GO:0016491|GO:0051537|GO:0055114 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 SUPERFAMILY SSF51905 135 324 2.92E-45 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 14 117 1.4E-31 T 13-10-2018 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 412 4.2E-11 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 366 380 4.2E-11 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 137 159 4.2E-11 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 304 4.2E-11 T 13-10-2018 CDG55_09075 e9b14256223945313ac3edfcd0ad45e7 539 Gene3D G3DSA:3.30.390.30 449 510 5.1E-7 T 13-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 CDG55_14690 a95212555c81456dd6191977137413be 293 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 3 291 49.432 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 CDG55_14690 a95212555c81456dd6191977137413be 293 SUPERFAMILY SSF51621 1 288 1.3E-98 T 13-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 CDG55_14690 a95212555c81456dd6191977137413be 293 Gene3D G3DSA:3.20.20.60 2 293 1.1E-101 T 13-10-2018 CDG55_14690 a95212555c81456dd6191977137413be 293 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 6 287 7.3E-130 T 13-10-2018 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 CDG55_14690 a95212555c81456dd6191977137413be 293 Pfam PF13714 Phosphoenolpyruvate phosphomutase 14 252 7.7E-48 T 13-10-2018 CDG55_08700 6f423e20c6ba7a794dc8730cbf200c58 363 Gene3D G3DSA:2.40.160.10 8 363 1.2E-49 T 13-10-2018 IPR023614 Porin domain superfamily CDG55_08700 6f423e20c6ba7a794dc8730cbf200c58 363 SUPERFAMILY SSF56935 15 363 1.95E-42 T 13-10-2018 CDG55_08700 6f423e20c6ba7a794dc8730cbf200c58 363 Pfam PF13609 Gram-negative porin 7 342 1.2E-26 T 13-10-2018 CDG55_07940 45e3323db5b2d942e0aa81ac62158fb3 189 SUPERFAMILY SSF48498 78 178 2.97E-8 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CDG55_07940 45e3323db5b2d942e0aa81ac62158fb3 189 SUPERFAMILY SSF46689 3 57 3.75E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_07940 45e3323db5b2d942e0aa81ac62158fb3 189 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 53 2.7E-13 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_07940 45e3323db5b2d942e0aa81ac62158fb3 189 Gene3D G3DSA:1.10.357.10 1 185 7.5E-38 T 13-10-2018 CDG55_07940 45e3323db5b2d942e0aa81ac62158fb3 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 1.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_07940 45e3323db5b2d942e0aa81ac62158fb3 189 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 1.0E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_03265 958486198f5b74f5477e40fac94069af 85 SUPERFAMILY SSF109910 7 81 1.83E-19 T 13-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily CDG55_03265 958486198f5b74f5477e40fac94069af 85 Pfam PF03937 Flavinator of succinate dehydrogenase 10 79 9.8E-19 T 13-10-2018 IPR005631 Flavinator of succinate dehydrogenase CDG55_03265 958486198f5b74f5477e40fac94069af 85 Gene3D G3DSA:1.10.150.250 4 84 7.7E-22 T 13-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily CDG55_06810 41dee46ea04a5ffd751c055261e2f3c8 424 Pfam PF13450 NAD(P)-binding Rossmann-like domain 5 74 1.2E-13 T 13-10-2018 CDG55_06810 41dee46ea04a5ffd751c055261e2f3c8 424 Gene3D G3DSA:1.10.405.20 75 199 1.6E-25 T 13-10-2018 CDG55_06810 41dee46ea04a5ffd751c055261e2f3c8 424 Gene3D G3DSA:3.50.50.60 3 398 1.6E-25 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06810 41dee46ea04a5ffd751c055261e2f3c8 424 Gene3D G3DSA:3.30.70.1990 282 370 1.6E-25 T 13-10-2018 CDG55_06810 41dee46ea04a5ffd751c055261e2f3c8 424 SUPERFAMILY SSF51905 1 420 5.83E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_06805 ccc22a55e72ca608b923c10f61c8bf97 328 Pfam PF00487 Fatty acid desaturase 58 278 1.3E-19 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 CDG55_06805 ccc22a55e72ca608b923c10f61c8bf97 328 PRINTS PR00075 Fatty acid desaturase family 1 signature 36 56 8.1E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_06805 ccc22a55e72ca608b923c10f61c8bf97 328 PRINTS PR00075 Fatty acid desaturase family 1 signature 213 234 8.1E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_06805 ccc22a55e72ca608b923c10f61c8bf97 328 PRINTS PR00075 Fatty acid desaturase family 1 signature 118 147 8.1E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_06805 ccc22a55e72ca608b923c10f61c8bf97 328 PRINTS PR00075 Fatty acid desaturase family 1 signature 256 270 8.1E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_06805 ccc22a55e72ca608b923c10f61c8bf97 328 PRINTS PR00075 Fatty acid desaturase family 1 signature 81 101 8.1E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 Gene3D G3DSA:3.40.50.20 1 85 1.3E-34 T 13-10-2018 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 SUPERFAMILY SSF51246 329 442 7.32E-41 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 SUPERFAMILY SSF56059 83 345 7.42E-67 T 13-10-2018 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 116 320 1.4E-74 T 13-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 SMART SM00878 334 440 4.5E-60 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 Gene3D G3DSA:3.30.470.20 87 430 9.3E-146 T 13-10-2018 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 Gene3D G3DSA:3.30.1490.20 131 201 9.3E-146 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 443 7.1E-206 T 13-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 Pfam PF02785 Biotin carboxylase C-terminal domain 334 440 2.0E-37 T 13-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 4.7E-44 T 13-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 CDG55_09110 b11807439e8a9c4c0a575d11962acc0d 454 SUPERFAMILY SSF52440 1 113 7.19E-48 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_08705 8d445c073e2f21b32962e55d5bdcff56 207 Pfam PF06078 Bacterial protein of unknown function (DUF937) 18 181 5.6E-15 T 13-10-2018 IPR009282 Protein of unknown function DUF937 CDG55_08705 8d445c073e2f21b32962e55d5bdcff56 207 Gene3D G3DSA:1.10.10.690 56 206 1.6E-25 T 13-10-2018 IPR027405 YidB-like CDG55_08705 8d445c073e2f21b32962e55d5bdcff56 207 SUPERFAMILY SSF140804 91 205 1.01E-23 T 13-10-2018 IPR027405 YidB-like CDG55_01465 b7144648e56429cdf81b75ff7130944b 210 Gene3D G3DSA:3.40.50.850 5 210 1.9E-78 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CDG55_01465 b7144648e56429cdf81b75ff7130944b 210 SUPERFAMILY SSF52499 6 208 4.06E-50 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CDG55_01465 b7144648e56429cdf81b75ff7130944b 210 Pfam PF00857 Isochorismatase family 9 201 5.1E-35 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CDG55_12860 bd01e98f917e6372e80ba6455aba2587 335 Pfam PF12833 Helix-turn-helix domain 254 332 2.0E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_12860 bd01e98f917e6372e80ba6455aba2587 335 Gene3D G3DSA:1.10.10.60 228 335 2.7E-25 T 13-10-2018 CDG55_12860 bd01e98f917e6372e80ba6455aba2587 335 SMART SM00342 248 330 1.2E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_12860 bd01e98f917e6372e80ba6455aba2587 335 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 205 6.6E-35 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_12860 bd01e98f917e6372e80ba6455aba2587 335 SUPERFAMILY SSF46689 283 332 7.17E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_13970 b368418397eab531724dd7c55549e770 470 Pfam PF00909 Ammonium Transporter Family 75 467 2.6E-119 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 CDG55_13970 b368418397eab531724dd7c55549e770 470 SUPERFAMILY SSF111352 69 451 2.62E-130 T 13-10-2018 CDG55_13970 b368418397eab531724dd7c55549e770 470 TIGRFAM TIGR00836 amt: ammonium transporter 73 467 1.6E-134 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 CDG55_13970 b368418397eab531724dd7c55549e770 470 Gene3D G3DSA:1.10.3430.10 55 470 2.9E-141 T 13-10-2018 IPR029020 Ammonium/urea transporter CDG55_13970 b368418397eab531724dd7c55549e770 470 PRINTS PR00342 Rhesus blood group protein signature 168 184 4.6E-7 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 CDG55_13970 b368418397eab531724dd7c55549e770 470 PRINTS PR00342 Rhesus blood group protein signature 295 317 4.6E-7 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 CDG55_13970 b368418397eab531724dd7c55549e770 470 PRINTS PR00342 Rhesus blood group protein signature 350 368 4.6E-7 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 CDG55_13970 b368418397eab531724dd7c55549e770 470 PRINTS PR00342 Rhesus blood group protein signature 264 282 4.6E-7 T 13-10-2018 IPR002229 Blood group Rhesus C/E/D polypeptide GO:0016020 CDG55_14500 f98c6108af683a45bd32f8a7a736d2fc 349 Pfam PF13395 HNH endonuclease 235 282 2.0E-8 T 13-10-2018 IPR003615 HNH nuclease CDG55_14500 f98c6108af683a45bd32f8a7a736d2fc 349 SMART SM00507 222 275 7.2E-6 T 13-10-2018 IPR003615 HNH nuclease CDG55_14500 f98c6108af683a45bd32f8a7a736d2fc 349 Gene3D G3DSA:3.30.40.60 216 305 1.1E-11 T 13-10-2018 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 SMART SM00984 300 404 4.2E-33 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 SUPERFAMILY SSF48179 185 281 9.35E-24 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 Gene3D G3DSA:1.20.5.100 187 214 3.6E-10 T 13-10-2018 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 SUPERFAMILY SSF51735 1 188 6.99E-7 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 186 276 8.0E-25 T 13-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 Gene3D G3DSA:3.40.50.720 215 419 1.0E-61 T 13-10-2018 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 PIRSF PIRSF000124 1 419 2.3E-117 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 SUPERFAMILY SSF52413 285 414 3.14E-31 T 13-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 104 400 4.5E-58 T 13-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 PIRSF PIRSF500134 1 419 3.7E-112 T 13-10-2018 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|MetaCyc: PWY-7820 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 Gene3D G3DSA:3.40.50.720 1 186 3.9E-12 T 13-10-2018 CDG55_14720 de6e87ccee6461213301b8e9d28bfea1 419 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 300 404 2.8E-24 T 13-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 CDG55_03535 bacdb66d9b48c6e66470bf0ccce0b434 159 Pfam PF00691 OmpA family 56 151 3.8E-24 T 13-10-2018 IPR006665 OmpA-like domain CDG55_03535 bacdb66d9b48c6e66470bf0ccce0b434 159 SUPERFAMILY SSF103088 43 159 2.88E-36 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_03535 bacdb66d9b48c6e66470bf0ccce0b434 159 Gene3D G3DSA:3.30.1330.60 24 158 1.8E-41 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_03535 bacdb66d9b48c6e66470bf0ccce0b434 159 PRINTS PR01021 OMPA domain signature 102 118 7.9E-18 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_03535 bacdb66d9b48c6e66470bf0ccce0b434 159 PRINTS PR01021 OMPA domain signature 87 102 7.9E-18 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_03535 bacdb66d9b48c6e66470bf0ccce0b434 159 PRINTS PR01021 OMPA domain signature 57 79 7.9E-18 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_11380 4c58b5d76b360339ef5dc348b7268ecf 235 Pfam PF00881 Nitroreductase family 13 209 8.2E-37 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CDG55_11380 4c58b5d76b360339ef5dc348b7268ecf 235 Gene3D G3DSA:3.40.109.10 2 230 1.1E-66 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDG55_11380 4c58b5d76b360339ef5dc348b7268ecf 235 SUPERFAMILY SSF55469 9 232 1.03E-48 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDG55_02195 714b74bea92a1e085e130a6c9bce0152 357 SMART SM00477 81 269 2.6E-33 T 13-10-2018 IPR020821 Extracellular Endonuclease, subunit A GO:0003676|GO:0016787|GO:0046872 CDG55_02195 714b74bea92a1e085e130a6c9bce0152 357 Pfam PF01223 DNA/RNA non-specific endonuclease 73 263 5.3E-41 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 CDG55_02195 714b74bea92a1e085e130a6c9bce0152 357 SUPERFAMILY SSF54060 55 277 9.42E-64 T 13-10-2018 CDG55_02195 714b74bea92a1e085e130a6c9bce0152 357 SMART SM00892 80 269 5.2E-39 T 13-10-2018 IPR001604 DNA/RNA non-specific endonuclease GO:0003676|GO:0016787|GO:0046872 CDG55_02195 714b74bea92a1e085e130a6c9bce0152 357 Gene3D G3DSA:3.40.570.10 65 289 3.4E-54 T 13-10-2018 CDG55_11450 68507141fb98df690a7e17519e4392fe 121 Pfam PF04304 Protein of unknown function (DUF454) 4 117 2.2E-34 T 13-10-2018 IPR007401 Protein of unknown function DUF454 CDG55_11450 68507141fb98df690a7e17519e4392fe 121 PIRSF PIRSF016789 1 121 2.6E-28 T 13-10-2018 IPR007401 Protein of unknown function DUF454 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 Gene3D G3DSA:1.10.580.10 38 364 2.6E-124 T 13-10-2018 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 PIRSF PIRSF001369 12 385 4.0E-109 T 13-10-2018 IPR024176 Citrate synthase, bacterial-type CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 Pfam PF00285 Citrate synthase, C-terminal domain 18 366 4.1E-113 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 SUPERFAMILY SSF48256 19 375 4.58E-121 T 13-10-2018 IPR036969 Citrate synthase superfamily GO:0046912 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 Gene3D G3DSA:1.10.230.10 233 331 2.6E-124 T 13-10-2018 IPR016143 Citrate synthase-like, small alpha subdomain CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 17 384 3.3E-151 T 13-10-2018 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 PRINTS PR00143 Citrate synthase signature 260 280 1.3E-36 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 PRINTS PR00143 Citrate synthase signature 185 200 1.3E-36 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 PRINTS PR00143 Citrate synthase signature 317 333 1.3E-36 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 PRINTS PR00143 Citrate synthase signature 207 235 1.3E-36 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 PRINTS PR00143 Citrate synthase signature 135 148 1.3E-36 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_14685 ce4a604dda882fc70deeb8e1fc15e340 385 PRINTS PR00143 Citrate synthase signature 337 351 1.3E-36 T 13-10-2018 IPR002020 Citrate synthase GO:0046912 CDG55_05095 3a1c4a074f23f8a3687a4272df7a4ee2 239 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 3 238 19.329 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 CDG55_05095 3a1c4a074f23f8a3687a4272df7a4ee2 239 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 53 230 7.5E-39 T 13-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 CDG55_05095 3a1c4a074f23f8a3687a4272df7a4ee2 239 SUPERFAMILY SSF63848 133 229 3.01E-26 T 13-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 CDG55_05095 3a1c4a074f23f8a3687a4272df7a4ee2 239 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 135 230 9.9E-26 T 13-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 CDG55_05095 3a1c4a074f23f8a3687a4272df7a4ee2 239 Gene3D G3DSA:2.160.20.70 128 238 4.7E-26 T 13-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 CDG55_12310 0b804fcbdb9f6f0d3f1a0b4a725733a9 80 Gene3D G3DSA:1.10.10.1130 1 78 2.8E-26 T 13-10-2018 CDG55_12310 0b804fcbdb9f6f0d3f1a0b4a725733a9 80 Pfam PF10982 Protein of unknown function (DUF2789) 1 74 1.0E-25 T 13-10-2018 IPR021250 Protein of unknown function DUF2789 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 PRINTS PR00073 Coprogen oxidase signature 38 54 9.2E-75 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 PRINTS PR00073 Coprogen oxidase signature 55 76 9.2E-75 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 PRINTS PR00073 Coprogen oxidase signature 132 154 9.2E-75 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 PRINTS PR00073 Coprogen oxidase signature 169 198 9.2E-75 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 PRINTS PR00073 Coprogen oxidase signature 241 268 9.2E-75 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 PRINTS PR00073 Coprogen oxidase signature 97 121 9.2E-75 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 PRINTS PR00073 Coprogen oxidase signature 269 295 9.2E-75 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 Gene3D G3DSA:3.40.1500.10 1 313 1.4E-137 T 13-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 SUPERFAMILY SSF102886 7 309 1.96E-125 T 13-10-2018 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 PIRSF PIRSF000166 1 310 6.8E-120 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_02960 2c1aff9517ae8f808637a2227f592394 313 Pfam PF01218 Coproporphyrinogen III oxidase 11 309 7.4E-120 T 13-10-2018 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-7159|Reactome: R-HSA-189451 CDG55_10735 ad2eaf3bbd1b80ae5acbef8176c20d09 286 Pfam PF01464 Transglycosylase SLT domain 94 200 4.0E-30 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CDG55_10735 ad2eaf3bbd1b80ae5acbef8176c20d09 286 SUPERFAMILY SSF53955 86 212 1.27E-48 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_10735 ad2eaf3bbd1b80ae5acbef8176c20d09 286 Gene3D G3DSA:1.10.530.10 50 218 4.3E-50 T 13-10-2018 CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 SUPERFAMILY SSF56601 250 609 1.04E-94 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 234 2.2E-46 T 13-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 Gene3D G3DSA:3.30.1390.30 85 160 6.8E-46 T 13-10-2018 CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 606 2.2E-217 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 3 610 49.285 T 13-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 SUPERFAMILY SSF56519 56 249 3.79E-52 T 13-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 Gene3D G3DSA:3.90.1310.10 64 244 6.8E-46 T 13-10-2018 CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 Pfam PF00905 Penicillin binding protein transpeptidase domain 267 601 3.7E-73 T 13-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 CDG55_05740 7b86bba7e3ebe4dd2f6dfca7acc57e4b 674 Gene3D G3DSA:3.40.710.10 245 618 1.3E-98 T 13-10-2018 CDG55_10535 93caebf8f9324ea756dc646953c1b445 387 Pfam PF01168 Alanine racemase, N-terminal domain 25 262 4.1E-22 T 13-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 CDG55_10535 93caebf8f9324ea756dc646953c1b445 387 Gene3D G3DSA:3.20.20.10 28 259 2.9E-34 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_10535 93caebf8f9324ea756dc646953c1b445 387 SUPERFAMILY SSF51419 25 265 4.86E-18 T 13-10-2018 IPR029066 PLP-binding barrel CDG55_03455 2fdc677c5d263b0b635955966e3e0eec 508 PIRSF PIRSF001394 1 505 4.9E-212 T 13-10-2018 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 CDG55_03455 2fdc677c5d263b0b635955966e3e0eec 508 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 14 285 4.2E-68 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CDG55_03455 2fdc677c5d263b0b635955966e3e0eec 508 Pfam PF05681 Fumarate hydratase (Fumerase) 13 285 2.5E-102 T 13-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 CDG55_03455 2fdc677c5d263b0b635955966e3e0eec 508 SUPERFAMILY SSF117457 316 486 5.1E-64 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CDG55_03455 2fdc677c5d263b0b635955966e3e0eec 508 Pfam PF05683 Fumarase C-terminus 289 488 4.5E-78 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CDG55_03455 2fdc677c5d263b0b635955966e3e0eec 508 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 325 486 8.1E-48 T 13-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 CDG55_03455 2fdc677c5d263b0b635955966e3e0eec 508 Gene3D G3DSA:3.20.130.10 301 487 5.3E-61 T 13-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 SUPERFAMILY SSF141371 327 432 2.16E-6 T 13-10-2018 CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 Pfam PF00561 alpha/beta hydrolase fold 58 293 7.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 Gene3D G3DSA:3.40.50.1820 23 306 1.1E-29 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 Gene3D G3DSA:2.40.10.220 324 435 4.4E-6 T 13-10-2018 CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 PRINTS PR00111 Alpha/beta hydrolase fold signature 134 147 5.1E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 PRINTS PR00111 Alpha/beta hydrolase fold signature 252 266 5.1E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 PRINTS PR00111 Alpha/beta hydrolase fold signature 82 97 5.1E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 PRINTS PR00111 Alpha/beta hydrolase fold signature 148 161 5.1E-5 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_03475 ceb4b5612d304cd150dfcaca69d88fe1 436 SUPERFAMILY SSF53474 36 307 1.45E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_08175 0bb01f5b25cd646c909b9494081cb33d 305 Pfam PF03956 Lysine exporter LysO 116 301 2.2E-51 T 13-10-2018 IPR005642 Lysine exporter LysO CDG55_08175 0bb01f5b25cd646c909b9494081cb33d 305 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 138 286 6.0E-60 T 13-10-2018 IPR005642 Lysine exporter LysO CDG55_03580 f557e50a332252ce1c9e9c4a80162290 111 Gene3D G3DSA:3.90.190.10 1 110 8.2E-31 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CDG55_03580 f557e50a332252ce1c9e9c4a80162290 111 Pfam PF04273 Putative phosphatase (DUF442) 2 106 3.7E-31 T 13-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 CDG55_03580 f557e50a332252ce1c9e9c4a80162290 111 SUPERFAMILY SSF52799 8 93 4.24E-5 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CDG55_03580 f557e50a332252ce1c9e9c4a80162290 111 TIGRFAM TIGR01244 TIGR01244: TIGR01244 family protein 3 105 1.7E-27 T 13-10-2018 IPR005939 Beta-lactamase hydrolase-like GO:0016787 CDG55_08210 adcafb4ad86cbaac2532a152d172a4e4 285 Gene3D G3DSA:3.40.50.1820 2 280 2.0E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_08210 adcafb4ad86cbaac2532a152d172a4e4 285 SUPERFAMILY SSF53474 4 268 1.91E-30 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_08210 adcafb4ad86cbaac2532a152d172a4e4 285 Pfam PF12146 Serine aminopeptidase, S33 42 142 5.0E-11 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 CDG55_08210 adcafb4ad86cbaac2532a152d172a4e4 285 PIRSF PIRSF037442 1 285 3.4E-73 T 13-10-2018 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 CDG55_07540 8447e02bd9dfc740f851edde3b498147 349 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 39 210 7.0E-19 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_07540 8447e02bd9dfc740f851edde3b498147 349 SUPERFAMILY SSF46689 290 339 2.11E-12 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_07540 8447e02bd9dfc740f851edde3b498147 349 Pfam PF12833 Helix-turn-helix domain 259 334 3.0E-17 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_07540 8447e02bd9dfc740f851edde3b498147 349 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 303 318 3.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_07540 8447e02bd9dfc740f851edde3b498147 349 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 318 334 3.1E-6 T 13-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 CDG55_07540 8447e02bd9dfc740f851edde3b498147 349 Gene3D G3DSA:1.10.10.60 236 345 3.8E-24 T 13-10-2018 CDG55_07540 8447e02bd9dfc740f851edde3b498147 349 SMART SM00342 252 334 6.4E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_03975 1fde06dea28fa6be891fc83252f74ba2 958 Pfam PF10101 Predicted membrane protein (DUF2339) 209 948 2.0E-104 T 13-10-2018 IPR019286 Protein of unknown function DUF2339, transmembrane CDG55_13835 21296f230f66ba8766f97d5eb0839cb6 397 Pfam PF01098 Cell cycle protein 32 385 2.7E-100 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_13835 21296f230f66ba8766f97d5eb0839cb6 397 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 30 383 2.7E-122 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_13835 21296f230f66ba8766f97d5eb0839cb6 397 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 27 395 37.072 T 13-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_05695 998b9298e5c101329fd6cc05ba8ae986 343 SUPERFAMILY SSF53850 20 337 9.77E-62 T 13-10-2018 CDG55_05695 998b9298e5c101329fd6cc05ba8ae986 343 Gene3D G3DSA:3.40.190.10 115 281 6.9E-51 T 13-10-2018 CDG55_05695 998b9298e5c101329fd6cc05ba8ae986 343 Gene3D G3DSA:3.40.190.10 29 308 6.9E-51 T 13-10-2018 CDG55_05695 998b9298e5c101329fd6cc05ba8ae986 343 Pfam PF12849 PBP superfamily domain 21 307 3.3E-40 T 13-10-2018 IPR024370 PBP domain CDG55_06005 0cd208f5b14b95c8e1bda47cd346ef82 264 Pfam PF05675 Protein of unknown function (DUF817) 9 245 3.5E-82 T 13-10-2018 IPR008535 Protein of unknown function DUF817 CDG55_06005 0cd208f5b14b95c8e1bda47cd346ef82 264 PIRSF PIRSF009141 2 262 2.7E-73 T 13-10-2018 IPR008535 Protein of unknown function DUF817 CDG55_14775 271aa006fa962957a3b07cf249d7b629 295 SUPERFAMILY SSF53448 7 213 8.04E-48 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_14775 271aa006fa962957a3b07cf249d7b629 295 Gene3D G3DSA:3.90.550.10 1 260 9.0E-52 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_14775 271aa006fa962957a3b07cf249d7b629 295 Pfam PF00535 Glycosyl transferase family 2 9 136 2.2E-33 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDG55_12645 7a27d249ecc9e47ec0cabfad9a4f73ce 234 Gene3D G3DSA:3.40.50.360 1 234 3.9E-79 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_12645 7a27d249ecc9e47ec0cabfad9a4f73ce 234 SUPERFAMILY SSF52218 4 222 8.61E-64 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_12645 7a27d249ecc9e47ec0cabfad9a4f73ce 234 Pfam PF03358 NADPH-dependent FMN reductase 28 170 4.0E-27 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDG55_12645 7a27d249ecc9e47ec0cabfad9a4f73ce 234 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 3 220 1.0E-118 T 13-10-2018 IPR014063 Arsenate resistance ArsH CDG55_05055 b1c118dc5e8872be1ff0bf778ce74662 271 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 113 233 1.3E-39 T 13-10-2018 IPR007472 N-end rule aminoacyl transferase, C-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 CDG55_05055 b1c118dc5e8872be1ff0bf778ce74662 271 PIRSF PIRSF037208 4 252 6.4E-99 T 13-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 CDG55_05055 b1c118dc5e8872be1ff0bf778ce74662 271 SUPERFAMILY SSF55729 84 246 2.04E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_05055 b1c118dc5e8872be1ff0bf778ce74662 271 Hamap MF_00689 Aspartate/glutamate leucyltransferase [bpt]. 11 239 39.984 T 13-10-2018 IPR017138 Aspartate/glutamate leucyltransferase GO:0008914|GO:0071596 MetaCyc: PWY-7802 CDG55_05055 b1c118dc5e8872be1ff0bf778ce74662 271 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 21 91 1.6E-16 T 13-10-2018 IPR007471 N-end aminoacyl transferase, N-terminal GO:0004057|GO:0016598 MetaCyc: PWY-7802 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 51 361 1.5E-107 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 Gene3D G3DSA:1.10.1160.10 285 363 5.9E-33 T 13-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 Gene3D G3DSA:2.40.240.10 372 486 2.1E-78 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 Gene3D G3DSA:3.90.800.10 125 233 1.1E-101 T 13-10-2018 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 24 570 49.912 T 13-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 Gene3D G3DSA:2.40.240.10 364 567 2.1E-78 T 13-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 52 570 2.3E-229 T 13-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 Gene3D G3DSA:3.40.50.620 52 271 1.1E-101 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 364 549 4.8E-57 T 13-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 PRINTS PR00987 Glutamyl-tRNA synthetase signature 234 244 3.2E-7 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 PRINTS PR00987 Glutamyl-tRNA synthetase signature 55 67 3.2E-7 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 PRINTS PR00987 Glutamyl-tRNA synthetase signature 84 97 3.2E-7 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 SUPERFAMILY SSF52374 51 370 2.42E-95 T 13-10-2018 CDG55_09585 af10627db05d3b60014b83a399c02dbb 575 SUPERFAMILY SSF50715 364 569 1.36E-68 T 13-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 SUPERFAMILY SSF51306 59 273 8.63E-64 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 Pfam PF00717 Peptidase S24-like 68 149 2.9E-20 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 Gene3D G3DSA:2.170.230.10 136 230 5.5E-66 T 13-10-2018 CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 Pfam PF10502 Signal peptidase, peptidase S26 229 268 5.5E-5 T 13-10-2018 IPR019533 Peptidase S26 CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 231 250 2.7E-24 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 61 77 2.7E-24 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 125 137 2.7E-24 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 49 269 1.9E-49 T 13-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 CDG55_10090 58001c1de79b05138fd53c9680c3d453 287 Gene3D G3DSA:2.10.109.10 59 270 5.5E-66 T 13-10-2018 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 79 104 6.1E-35 T 13-10-2018 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 6.1E-35 T 13-10-2018 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 242 268 6.1E-35 T 13-10-2018 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 310 322 6.1E-35 T 13-10-2018 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 107 127 6.1E-35 T 13-10-2018 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 220 241 6.1E-35 T 13-10-2018 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 Pfam PF13244 Domain of unknown function (DUF4040) 624 685 2.8E-18 T 13-10-2018 IPR025383 Domain of unknown function DUF4040 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 108 5.1E-7 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_13320 2d8c2e96b0b446988333531f23388028 947 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 798 924 7.7E-34 T 13-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CDG55_13320 2d8c2e96b0b446988333531f23388028 947 Pfam PF00361 Proton-conducting membrane transporter 130 418 1.4E-63 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_02095 337eec710c1f68f5aca14e9c4d033af0 77 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 13 68 1.0E-16 T 13-10-2018 IPR010260 DNA-binding transcriptional activator AlpA CDG55_12420 b15d9c45c48caec82fdeb0024da42f2a 484 Pfam PF00171 Aldehyde dehydrogenase family 6 451 7.4E-93 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_12420 b15d9c45c48caec82fdeb0024da42f2a 484 Gene3D G3DSA:3.40.605.10 28 451 5.1E-147 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_12420 b15d9c45c48caec82fdeb0024da42f2a 484 SUPERFAMILY SSF53720 7 453 3.8E-111 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_12420 b15d9c45c48caec82fdeb0024da42f2a 484 PIRSF PIRSF036492 1 484 1.5E-157 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 CDG55_12420 b15d9c45c48caec82fdeb0024da42f2a 484 Gene3D G3DSA:3.40.309.10 229 431 5.1E-147 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CDG55_06960 6fac96bf6cbab0eba45736f1f40face9 610 Pfam PF02254 TrkA-N domain 407 521 1.1E-18 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDG55_06960 6fac96bf6cbab0eba45736f1f40face9 610 Pfam PF00999 Sodium/hydrogen exchanger family 15 378 2.7E-66 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CDG55_06960 6fac96bf6cbab0eba45736f1f40face9 610 SUPERFAMILY SSF51735 406 535 1.09E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_06960 6fac96bf6cbab0eba45736f1f40face9 610 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 17 289 9.9E-78 T 13-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 CDG55_06960 6fac96bf6cbab0eba45736f1f40face9 610 Gene3D G3DSA:3.40.50.720 405 565 4.2E-33 T 13-10-2018 CDG55_06960 6fac96bf6cbab0eba45736f1f40face9 610 Gene3D G3DSA:1.20.1530.20 7 391 4.4E-81 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CDG55_01685 eca25d6badfbb0d8b6c45747b14526f0 245 Gene3D G3DSA:2.40.230.20 17 239 1.8E-26 T 13-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 CDG55_01685 eca25d6badfbb0d8b6c45747b14526f0 245 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 45 209 1.5E-13 T 13-10-2018 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 CDG55_01685 eca25d6badfbb0d8b6c45747b14526f0 245 SUPERFAMILY SSF111364 25 245 2.09E-61 T 13-10-2018 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily GO:0009279 CDG55_12720 1305a83992f00d67b0bf937f2026dc89 276 SUPERFAMILY SSF52467 7 274 1.45E-62 T 13-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily CDG55_12720 1305a83992f00d67b0bf937f2026dc89 276 Pfam PF02146 Sir2 family 28 192 1.6E-20 T 13-10-2018 IPR003000 Sirtuin family GO:0070403 CDG55_12720 1305a83992f00d67b0bf937f2026dc89 276 Gene3D G3DSA:3.30.1600.10 37 192 1.9E-38 T 13-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily CDG55_12720 1305a83992f00d67b0bf937f2026dc89 276 Gene3D G3DSA:3.40.50.1220 19 259 1.9E-38 T 13-10-2018 CDG55_14955 081f3828ee419d2f7321d11c43257175 180 SUPERFAMILY SSF52218 1 174 9.73E-34 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_14955 081f3828ee419d2f7321d11c43257175 180 Pfam PF03358 NADPH-dependent FMN reductase 1 137 6.9E-31 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDG55_14955 081f3828ee419d2f7321d11c43257175 180 Gene3D G3DSA:3.40.50.360 1 177 6.0E-41 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_12640 f989fa089f15e0acc06649f3fc970bdf 779 Gene3D G3DSA:2.40.170.20 176 779 3.3E-139 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_12640 f989fa089f15e0acc06649f3fc970bdf 779 Gene3D G3DSA:2.170.130.10 44 172 6.9E-41 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_12640 f989fa089f15e0acc06649f3fc970bdf 779 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 160 1.3E-19 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_12640 f989fa089f15e0acc06649f3fc970bdf 779 Pfam PF00593 TonB dependent receptor 236 778 2.7E-51 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_12640 f989fa089f15e0acc06649f3fc970bdf 779 SUPERFAMILY SSF56935 56 779 2.44E-125 T 13-10-2018 CDG55_12640 f989fa089f15e0acc06649f3fc970bdf 779 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 64 778 7.5E-81 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CDG55_00575 ef49cdc6e3fd530389d6195386a54a1e 299 Pfam PF02195 ParB-like nuclease domain 37 123 7.5E-23 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CDG55_00575 ef49cdc6e3fd530389d6195386a54a1e 299 SMART SM00470 35 124 1.2E-26 T 13-10-2018 IPR003115 ParB/Sulfiredoxin CDG55_00575 ef49cdc6e3fd530389d6195386a54a1e 299 SUPERFAMILY SSF109709 118 218 1.7E-12 T 13-10-2018 CDG55_00575 ef49cdc6e3fd530389d6195386a54a1e 299 Gene3D G3DSA:3.90.1530.30 48 109 2.4E-21 T 13-10-2018 CDG55_00575 ef49cdc6e3fd530389d6195386a54a1e 299 SUPERFAMILY SSF110849 37 126 2.27E-26 T 13-10-2018 IPR036086 ParB/Sulfiredoxin superfamily CDG55_00575 ef49cdc6e3fd530389d6195386a54a1e 299 Gene3D G3DSA:1.10.10.2830 111 229 6.6E-9 T 13-10-2018 CDG55_00575 ef49cdc6e3fd530389d6195386a54a1e 299 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 34 210 5.7E-36 T 13-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 CDG55_02415 e323518118a272ef0955850058e3cdf6 331 SUPERFAMILY SSF53850 20 327 2.04E-84 T 13-10-2018 CDG55_02415 e323518118a272ef0955850058e3cdf6 331 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 17 326 5.4E-142 T 13-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 CDG55_02415 e323518118a272ef0955850058e3cdf6 331 Pfam PF13531 Bacterial extracellular solute-binding protein 40 280 3.8E-44 T 13-10-2018 CDG55_02415 e323518118a272ef0955850058e3cdf6 331 Gene3D G3DSA:3.40.190.10 27 295 4.9E-133 T 13-10-2018 CDG55_02415 e323518118a272ef0955850058e3cdf6 331 Gene3D G3DSA:3.40.190.10 114 325 4.9E-133 T 13-10-2018 CDG55_14930 cb9ca4e08811042b7588dca8c189b12f 188 Gene3D G3DSA:3.40.50.1580 1 187 2.0E-34 T 13-10-2018 CDG55_14930 cb9ca4e08811042b7588dca8c189b12f 188 SUPERFAMILY SSF53167 4 181 2.75E-31 T 13-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 CDG55_14930 cb9ca4e08811042b7588dca8c189b12f 188 Pfam PF01048 Phosphorylase superfamily 28 169 2.5E-12 T 13-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 Hamap MF_01151 Protein GrpE [grpE]. 3 181 16.173 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 Gene3D G3DSA:3.90.20.20 24 127 2.4E-16 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 SUPERFAMILY SSF51064 136 180 6.02E-11 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 Gene3D G3DSA:2.30.22.10 128 181 1.1E-14 T 13-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 PRINTS PR00773 GrpE protein signature 60 76 1.7E-9 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 PRINTS PR00773 GrpE protein signature 160 179 1.7E-9 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 PRINTS PR00773 GrpE protein signature 135 150 1.7E-9 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 SUPERFAMILY SSF58014 33 128 4.71E-18 T 13-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 CDG55_15015 7f19dd6ae8a3b93c80ba62f44cc61728 181 Pfam PF01025 GrpE 25 180 1.1E-34 T 13-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 CDG55_06520 d32c6838f0f4bdba5b30f16e9f3c349f 178 SUPERFAMILY SSF51161 5 176 3.33E-44 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_06520 d32c6838f0f4bdba5b30f16e9f3c349f 178 Gene3D G3DSA:2.160.10.10 4 178 1.4E-55 T 13-10-2018 CDG55_06520 d32c6838f0f4bdba5b30f16e9f3c349f 178 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 97 130 3.6E-9 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_06520 d32c6838f0f4bdba5b30f16e9f3c349f 178 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 47 1.4E-4 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_10065 df9f96ce5b9bacbcb36a5a695aa1b144 235 Gene3D G3DSA:1.20.1440.120 73 235 5.3E-41 T 13-10-2018 CDG55_10065 df9f96ce5b9bacbcb36a5a695aa1b144 235 Pfam PF11967 Recombination protein O N terminal 3 41 1.9E-8 T 13-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal CDG55_10065 df9f96ce5b9bacbcb36a5a695aa1b144 235 Pfam PF02565 Recombination protein O C terminal 76 227 9.2E-16 T 13-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 CDG55_10065 df9f96ce5b9bacbcb36a5a695aa1b144 235 SUPERFAMILY SSF50249 1 69 2.91E-6 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_10065 df9f96ce5b9bacbcb36a5a695aa1b144 235 Gene3D G3DSA:2.40.50.140 4 69 2.9E-10 T 13-10-2018 CDG55_00665 71364e44205b22f04154ea30879cb1a9 213 Gene3D G3DSA:3.90.1680.10 1 211 4.7E-55 T 13-10-2018 IPR036590 SOS response associated peptidase-like CDG55_00665 71364e44205b22f04154ea30879cb1a9 213 Pfam PF02586 SOS response associated peptidase (SRAP) 26 190 1.9E-28 T 13-10-2018 IPR003738 SOS response associated peptidase (SRAP) CDG55_00665 71364e44205b22f04154ea30879cb1a9 213 SUPERFAMILY SSF143081 20 201 1.14E-51 T 13-10-2018 IPR036590 SOS response associated peptidase-like CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 SUPERFAMILY SSF52029 184 376 1.24E-82 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 Gene3D G3DSA:3.50.7.10 173 379 8.9E-236 T 13-10-2018 IPR027409 GroEL-like apical domain superfamily CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 523 1.5E-96 T 13-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 Hamap MF_00600 60 kDa chaperonin [groL]. 2 544 41.407 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 83 110 8.2E-75 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 398 419 8.2E-75 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 350 375 8.2E-75 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 268 291 8.2E-75 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 PRINTS PR00298 60kDa chaperonin signature 27 53 8.2E-75 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 Gene3D G3DSA:1.10.560.10 8 521 8.9E-236 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 SUPERFAMILY SSF48592 7 521 5.42E-77 T 13-10-2018 IPR027413 GroEL-like equatorial domain superfamily CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 527 1.4E-254 T 13-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 SUPERFAMILY SSF54849 139 203 2.52E-24 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CDG55_00415 e4bfe23eda6b05eff10a1663f9a96968 546 Gene3D G3DSA:3.30.260.10 138 410 8.9E-236 T 13-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CDG55_04880 51c9e82d46f2d6205fbf296c7fbb12be 292 Pfam PF11726 Inovirus Gp2 122 290 1.4E-18 T 13-10-2018 CDG55_00525 06e27c8f33f878d84d9b96a77a2b084d 88 SUPERFAMILY SSF46785 23 86 6.06E-21 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00525 06e27c8f33f878d84d9b96a77a2b084d 88 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 80 4.4E-22 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_00525 06e27c8f33f878d84d9b96a77a2b084d 88 Gene3D G3DSA:1.10.10.10 21 88 2.1E-23 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_00525 06e27c8f33f878d84d9b96a77a2b084d 88 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 57 68 4.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_00525 06e27c8f33f878d84d9b96a77a2b084d 88 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 47 4.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_00525 06e27c8f33f878d84d9b96a77a2b084d 88 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 57 4.1E-9 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 SUPERFAMILY SSF54713 57 269 4.51E-44 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 286 3.5E-96 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 Gene3D G3DSA:1.10.8.10 1 56 1.0E-24 T 13-10-2018 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 SUPERFAMILY SSF46934 4 54 1.28E-17 T 13-10-2018 IPR009060 UBA-like superfamily GO:0005515 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 Gene3D G3DSA:1.10.286.20 188 234 3.4E-36 T 13-10-2018 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 Gene3D G3DSA:3.30.479.20 57 148 1.2E-26 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 Hamap MF_00050 Elongation factor Ts [tsf]. 1 288 73.55 T 13-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 Pfam PF00889 Elongation factor TS 71 269 2.4E-62 T 13-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 CDG55_09985 8f6c37b818200926133aa6bb075b6115 292 Gene3D G3DSA:3.30.479.20 153 268 3.4E-36 T 13-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 CDG55_13240 b0e64db710cd3062ff27e7888b6056ca 432 Gene3D G3DSA:3.40.710.30 38 409 5.3E-76 T 13-10-2018 CDG55_13240 b0e64db710cd3062ff27e7888b6056ca 432 SUPERFAMILY SSF56601 36 387 1.29E-68 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_13240 b0e64db710cd3062ff27e7888b6056ca 432 Pfam PF00144 Beta-lactamase 46 390 1.5E-54 T 13-10-2018 IPR001466 Beta-lactamase-related CDG55_08895 52df11808014df91b34b49406a7f4251 161 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 16 157 31.07 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CDG55_08895 52df11808014df91b34b49406a7f4251 161 SUPERFAMILY SSF54637 20 153 1.05E-43 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_08895 52df11808014df91b34b49406a7f4251 161 Pfam PF07977 FabA-like domain 25 149 2.2E-32 T 13-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CDG55_08895 52df11808014df91b34b49406a7f4251 161 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 16 153 4.4E-56 T 13-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CDG55_08895 52df11808014df91b34b49406a7f4251 161 Gene3D G3DSA:3.10.129.10 10 158 5.5E-55 T 13-10-2018 CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 PIRSF PIRSF019169 2 352 1.2E-121 T 13-10-2018 IPR005883 Type IV pilus assembly protein PilM CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 SUPERFAMILY SSF53067 193 350 3.63E-24 T 13-10-2018 CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 12 351 7.5E-113 T 13-10-2018 IPR005883 Type IV pilus assembly protein PilM CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 Pfam PF11104 Type IV pilus assembly protein PilM; 14 351 1.3E-135 T 13-10-2018 IPR005883 Type IV pilus assembly protein PilM CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 Gene3D G3DSA:3.30.420.40 188 315 1.1E-85 T 13-10-2018 CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 SUPERFAMILY SSF53067 12 178 3.37E-13 T 13-10-2018 CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 Gene3D G3DSA:3.30.420.40 13 349 1.1E-85 T 13-10-2018 CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 SMART SM00842 12 181 0.0015 T 13-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 CDG55_02460 5fd2d0d47f83f54d09a190e9d6ba410c 352 Gene3D G3DSA:3.30.1490.300 88 147 1.1E-85 T 13-10-2018 CDG55_05480 a4ea20cb8067d3a12a645784b3cfd0d5 755 Gene3D G3DSA:2.170.130.10 38 182 3.5E-42 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_05480 a4ea20cb8067d3a12a645784b3cfd0d5 755 Gene3D G3DSA:2.40.170.20 188 755 5.1E-184 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_05480 a4ea20cb8067d3a12a645784b3cfd0d5 755 Pfam PF00593 TonB dependent receptor 285 754 2.8E-55 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_05480 a4ea20cb8067d3a12a645784b3cfd0d5 755 SUPERFAMILY SSF56935 48 755 5.19E-127 T 13-10-2018 CDG55_05480 a4ea20cb8067d3a12a645784b3cfd0d5 755 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 64 755 4.3E-67 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CDG55_05480 a4ea20cb8067d3a12a645784b3cfd0d5 755 Pfam PF07715 TonB-dependent Receptor Plug Domain 61 177 2.5E-26 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_04020 c4d8cf26a9270ecab3ba6acf2727fa9e 322 SUPERFAMILY SSF81606 141 315 2.54E-5 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CDG55_04020 c4d8cf26a9270ecab3ba6acf2727fa9e 322 Gene3D G3DSA:3.60.40.10 95 321 2.8E-44 T 13-10-2018 IPR036457 PPM-type phosphatase domain superfamily KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CDG55_04020 c4d8cf26a9270ecab3ba6acf2727fa9e 322 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 152 312 2.2E-23 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CDG55_04020 c4d8cf26a9270ecab3ba6acf2727fa9e 322 SMART SM00331 126 320 4.6E-12 T 13-10-2018 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04658+3.1.3.16|KEGG: 04660+3.1.3.16 CDG55_13160 e5ffb0b988d3c002eee14fd7f6331d3c 85 SUPERFAMILY SSF64307 8 84 8.37E-21 T 13-10-2018 IPR036868 TusA-like domain superfamily CDG55_13160 e5ffb0b988d3c002eee14fd7f6331d3c 85 Gene3D G3DSA:3.30.110.40 2 85 2.5E-27 T 13-10-2018 IPR036868 TusA-like domain superfamily CDG55_13160 e5ffb0b988d3c002eee14fd7f6331d3c 85 Pfam PF01206 Sulfurtransferase TusA 11 84 4.4E-24 T 13-10-2018 IPR001455 TusA-like domain CDG55_08330 8a4404af339070c40646fbbe8c8955c3 207 Pfam PF07290 Protein of unknown function (DUF1449) 15 195 3.2E-18 T 13-10-2018 IPR010840 Protein of unknown function DUF1449 CDG55_11820 7e4cbda4ca9b5a8e0f13e38e21da5862 228 SUPERFAMILY SSF46894 129 225 4.25E-24 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_11820 7e4cbda4ca9b5a8e0f13e38e21da5862 228 SUPERFAMILY SSF52172 1 124 1.32E-41 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_11820 7e4cbda4ca9b5a8e0f13e38e21da5862 228 Gene3D G3DSA:3.40.50.2300 1 126 5.7E-38 T 13-10-2018 CDG55_11820 7e4cbda4ca9b5a8e0f13e38e21da5862 228 Pfam PF00072 Response regulator receiver domain 4 113 3.2E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11820 7e4cbda4ca9b5a8e0f13e38e21da5862 228 SMART SM00448 2 112 8.0E-42 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11820 7e4cbda4ca9b5a8e0f13e38e21da5862 228 Gene3D G3DSA:1.10.10.10 127 225 7.0E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_11820 7e4cbda4ca9b5a8e0f13e38e21da5862 228 SMART SM00862 144 223 2.4E-24 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_11820 7e4cbda4ca9b5a8e0f13e38e21da5862 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 223 1.3E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_12825 faa7e393ada6bb0512d88bf626938a76 311 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 11 302 1.2E-63 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CDG55_12825 faa7e393ada6bb0512d88bf626938a76 311 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 9 311 40.611 T 13-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 CDG55_12825 faa7e393ada6bb0512d88bf626938a76 311 PIRSF PIRSF026649 9 311 1.1E-82 T 13-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 CDG55_01235 a04ec2300aaf0fcfd5c05ebb9030f793 375 Gene3D G3DSA:3.30.420.40 140 335 7.4E-124 T 13-10-2018 CDG55_01235 a04ec2300aaf0fcfd5c05ebb9030f793 375 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 3 375 40.138 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 CDG55_01235 a04ec2300aaf0fcfd5c05ebb9030f793 375 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 4 373 3.2E-133 T 13-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 CDG55_01235 a04ec2300aaf0fcfd5c05ebb9030f793 375 Gene3D G3DSA:3.30.420.40 11 370 7.4E-124 T 13-10-2018 CDG55_01235 a04ec2300aaf0fcfd5c05ebb9030f793 375 SUPERFAMILY SSF53067 4 347 4.53E-23 T 13-10-2018 CDG55_11690 7183ac246b4080e83318c606e2a25b7d 213 Pfam PF03006 Haemolysin-III related 12 205 5.7E-35 T 13-10-2018 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 CDG55_11690 7183ac246b4080e83318c606e2a25b7d 213 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 13 212 1.1E-58 T 13-10-2018 IPR005744 Hly-III GO:0016021|GO:0019835 CDG55_03495 611659fb1d600199cf57a70a5bdd0464 148 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 25 145 3.1E-25 T 13-10-2018 IPR019223 Domain of unknown function DUF2147 CDG55_03495 611659fb1d600199cf57a70a5bdd0464 148 Gene3D G3DSA:2.40.128.520 20 148 3.2E-17 T 13-10-2018 CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 SMART SM00382 336 503 5.1E-10 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 SMART SM00382 26 222 1.3E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 Gene3D G3DSA:3.40.50.300 274 541 5.4E-53 T 13-10-2018 CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 Gene3D G3DSA:3.40.50.300 1 258 5.2E-54 T 13-10-2018 CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 Pfam PF00005 ABC transporter 329 459 5.1E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 Pfam PF12848 ABC transporter 216 294 1.4E-29 T 13-10-2018 IPR032781 ABC-transporter extension domain CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 Pfam PF00005 ABC transporter 18 177 1.6E-19 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 SUPERFAMILY SSF52540 2 254 5.8E-45 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01200 3e142ef2677563404e3a52e92b91f98f 642 SUPERFAMILY SSF52540 293 534 1.28E-42 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04755 d29238a845e83b42df0ff4f346b9630e 255 Gene3D G3DSA:3.40.1190.20 1 237 3.1E-79 T 13-10-2018 IPR029056 Ribokinase-like CDG55_04755 d29238a845e83b42df0ff4f346b9630e 255 Pfam PF08543 Phosphomethylpyrimidine kinase 12 241 2.6E-69 T 13-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 CDG55_04755 d29238a845e83b42df0ff4f346b9630e 255 SUPERFAMILY SSF53613 2 240 1.41E-60 T 13-10-2018 IPR029056 Ribokinase-like CDG55_06515 f0eba15b5e52cb1db3debbafad8e3359 225 Pfam PF10946 Protein of unknown function DUF2625 4 209 1.8E-85 T 13-10-2018 IPR021239 Protein of unknown function DUF2625 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 SMART SM00388 812 877 1.0E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 SUPERFAMILY SSF52172 1054 1166 5.69E-16 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 SUPERFAMILY SSF55874 868 1036 1.18E-34 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Pfam PF12860 PAS fold 665 778 2.2E-42 T 13-10-2018 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 PRINTS PR00344 Bacterial sensor protein C-terminal signature 995 1013 1.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 PRINTS PR00344 Bacterial sensor protein C-terminal signature 960 974 1.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1019 1032 1.5E-8 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 SMART SM00448 1054 1163 4.6E-8 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Gene3D G3DSA:3.30.565.10 876 1037 1.2E-32 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 SUPERFAMILY SSF55785 650 772 6.75E-9 T 13-10-2018 IPR035965 PAS domain superfamily CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 922 1034 2.8E-17 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Gene3D G3DSA:1.20.1730.10 43 486 3.3E-20 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Gene3D G3DSA:3.30.450.20 647 777 1.4E-11 T 13-10-2018 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Gene3D G3DSA:3.40.50.2300 1047 1167 6.4E-17 T 13-10-2018 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Pfam PF00072 Response regulator receiver domain 1056 1161 1.5E-11 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Gene3D G3DSA:1.10.287.130 778 875 2.5E-12 T 13-10-2018 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 Pfam PF00512 His Kinase A (phospho-acceptor) domain 812 877 1.9E-8 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 SUPERFAMILY SSF47384 800 877 3.53E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_14190 c888715dbe7c5a9098b4e816b2fd5834 1172 SMART SM00387 921 1035 1.9E-20 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_03605 ea562b943d3de833202183839d7b01d0 162 Gene3D G3DSA:3.30.70.860 96 162 2.1E-29 T 13-10-2018 IPR035571 UPF0234-like, C-terminal CDG55_03605 ea562b943d3de833202183839d7b01d0 162 SUPERFAMILY SSF89963 2 87 5.49E-28 T 13-10-2018 IPR036183 YajQ-like superfamily CDG55_03605 ea562b943d3de833202183839d7b01d0 162 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 162 25.451 T 13-10-2018 IPR007551 Protein of unknown function DUF520 CDG55_03605 ea562b943d3de833202183839d7b01d0 162 Gene3D G3DSA:3.30.70.990 9 95 3.0E-28 T 13-10-2018 IPR035570 UPF0234, N-terminal CDG55_03605 ea562b943d3de833202183839d7b01d0 162 Pfam PF04461 Protein of unknown function (DUF520) 2 161 5.7E-62 T 13-10-2018 IPR007551 Protein of unknown function DUF520 CDG55_03605 ea562b943d3de833202183839d7b01d0 162 SUPERFAMILY SSF89963 90 162 1.83E-27 T 13-10-2018 IPR036183 YajQ-like superfamily CDG55_02360 4e04dc6a5797a5e4fbd87a4a5f8b7de5 311 Gene3D G3DSA:1.20.1510.10 19 213 3.2E-48 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_02360 4e04dc6a5797a5e4fbd87a4a5f8b7de5 311 SUPERFAMILY SSF161111 19 214 4.45E-59 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_02360 4e04dc6a5797a5e4fbd87a4a5f8b7de5 311 Pfam PF01545 Cation efflux family 22 213 2.1E-48 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDG55_02360 4e04dc6a5797a5e4fbd87a4a5f8b7de5 311 SUPERFAMILY SSF160240 218 289 8.24E-7 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CDG55_02360 4e04dc6a5797a5e4fbd87a4a5f8b7de5 311 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 19 291 2.8E-89 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDG55_03050 197b9ece2afa345c19c14e9836e1e4cf 326 Gene3D G3DSA:3.40.190.170 52 294 3.4E-14 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily CDG55_03050 197b9ece2afa345c19c14e9836e1e4cf 326 SUPERFAMILY SSF53850 129 271 7.47E-6 T 13-10-2018 CDG55_05190 e0f5b6ced6fe291e4eb079cc9c3faa6d 416 SUPERFAMILY SSF56300 4 342 1.76E-52 T 13-10-2018 CDG55_05190 e0f5b6ced6fe291e4eb079cc9c3faa6d 416 Pfam PF00149 Calcineurin-like phosphoesterase 4 234 3.0E-16 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CDG55_05190 e0f5b6ced6fe291e4eb079cc9c3faa6d 416 Gene3D G3DSA:3.60.21.10 1 284 2.5E-75 T 13-10-2018 IPR029052 Metallo-dependent phosphatase-like CDG55_05190 e0f5b6ced6fe291e4eb079cc9c3faa6d 416 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 291 386 3.5E-8 T 13-10-2018 IPR026843 Nuclease SbcCD subunit D, C-terminal domain CDG55_05190 e0f5b6ced6fe291e4eb079cc9c3faa6d 416 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 4 260 1.1E-53 T 13-10-2018 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 CDG55_12395 ceaf75cc712dacf51ee212e73d1218fe 134 Gene3D G3DSA:3.30.420.270 61 130 2.5E-13 T 13-10-2018 CDG55_12395 ceaf75cc712dacf51ee212e73d1218fe 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 133 4.8E-29 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 CDG55_02835 3890b42593464680c70ba22402075178 365 Pfam PF01594 AI-2E family transporter 13 345 1.4E-42 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 SUPERFAMILY SSF55831 1 280 7.72E-129 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 Hamap MF_00008 Thymidylate synthase [thyA]. 1 280 39.866 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 PRINTS PR00108 Thymidylate synthase family signature 157 172 4.0E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 PRINTS PR00108 Thymidylate synthase family signature 42 63 4.0E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 PRINTS PR00108 Thymidylate synthase family signature 131 150 4.0E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 PRINTS PR00108 Thymidylate synthase family signature 175 201 4.0E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 PRINTS PR00108 Thymidylate synthase family signature 213 230 4.0E-47 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 Pfam PF00303 Thymidylate synthase 2 280 3.2E-118 T 13-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 280 1.1E-139 T 13-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_12375 ffcb7c9c444c203d6071aa08d77d0f77 280 Gene3D G3DSA:3.30.572.10 1 280 4.1E-131 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_06405 46ef16d8f8b14a91a6a5ab88835a75aa 480 Gene3D G3DSA:1.25.40.10 271 476 2.5E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_06405 46ef16d8f8b14a91a6a5ab88835a75aa 480 Pfam PF14559 Tetratricopeptide repeat 347 412 1.1E-5 T 13-10-2018 CDG55_06405 46ef16d8f8b14a91a6a5ab88835a75aa 480 Gene3D G3DSA:3.30.2010.10 65 148 3.2E-7 T 13-10-2018 CDG55_06405 46ef16d8f8b14a91a6a5ab88835a75aa 480 SUPERFAMILY SSF48452 298 457 8.39E-10 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_06405 46ef16d8f8b14a91a6a5ab88835a75aa 480 Pfam PF01435 Peptidase family M48 77 256 2.2E-32 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CDG55_06405 46ef16d8f8b14a91a6a5ab88835a75aa 480 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 15 478 31.297 T 13-10-2018 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 Pfam PF00403 Heavy-metal-associated domain 25 85 1.8E-17 T 13-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 TIGRFAM TIGR02052 MerP: mercuric transport protein periplasmic component 1 90 8.7E-44 T 13-10-2018 IPR011795 Mercuric transport protein periplasmic component GO:0015097|GO:0015694|GO:0042597|GO:0045340|GO:0046689 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 PRINTS PR00946 Mercury scavenger protein signature 31 47 3.6E-55 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 PRINTS PR00946 Mercury scavenger protein signature 20 31 3.6E-55 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 PRINTS PR00946 Mercury scavenger protein signature 2 20 3.6E-55 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 PRINTS PR00946 Mercury scavenger protein signature 47 62 3.6E-55 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 PRINTS PR00946 Mercury scavenger protein signature 76 90 3.6E-55 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 PRINTS PR00946 Mercury scavenger protein signature 62 76 3.6E-55 T 13-10-2018 IPR001802 Mercuric transport protein periplasmic component/copper chaperone CopZ GO:0046872 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 SUPERFAMILY SSF55008 17 88 8.51E-22 T 13-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 CDG55_01125 59c1db73d80ee3ca4e51ce40c59c6c18 91 Gene3D G3DSA:3.30.70.100 20 90 1.3E-23 T 13-10-2018 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.4E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.4E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.4E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.4E-33 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 Pfam PF01926 50S ribosome-binding GTPase 5 126 9.8E-23 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 1.3E-157 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 Gene3D G3DSA:3.40.50.300 4 278 3.1E-151 T 13-10-2018 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 44.689 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 PIRSF PIRSF006641 1 363 7.4E-155 T 13-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 SUPERFAMILY SSF52540 3 301 2.01E-82 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 Gene3D G3DSA:3.10.20.30 48 361 3.1E-151 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 Gene3D G3DSA:1.10.150.300 113 200 3.1E-151 T 13-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 SUPERFAMILY SSF81271 279 360 4.14E-37 T 13-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 CDG55_09390 1a8283ad89871e9ee0d0c02015b84154 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 3.9E-40 T 13-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 CDG55_13495 657a6aacd71c3efff1024dee42a5e2b1 162 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 6 155 1.9E-58 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_13495 657a6aacd71c3efff1024dee42a5e2b1 162 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 3 162 36.207 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_13495 657a6aacd71c3efff1024dee42a5e2b1 162 Gene3D G3DSA:3.30.1060.10 1 161 3.4E-67 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_13495 657a6aacd71c3efff1024dee42a5e2b1 162 SUPERFAMILY SSF55068 3 159 2.22E-66 T 13-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_13495 657a6aacd71c3efff1024dee42a5e2b1 162 Pfam PF01625 Peptide methionine sulfoxide reductase 6 156 8.3E-62 T 13-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 CDG55_08135 e151ba86c33eff7da24c88757c74f2b0 174 Pfam PF14437 MafB19-like deaminase 12 159 3.1E-31 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CDG55_08135 e151ba86c33eff7da24c88757c74f2b0 174 SUPERFAMILY SSF53927 10 163 1.84E-50 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CDG55_08135 e151ba86c33eff7da24c88757c74f2b0 174 Gene3D G3DSA:3.40.140.10 2 173 8.3E-55 T 13-10-2018 CDG55_08135 e151ba86c33eff7da24c88757c74f2b0 174 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 17 159 40.111 T 13-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 CDG55_06845 f84711dec63724a93a19cf3676b21fcb 166 Pfam PF16036 Chalcone isomerase-like 58 164 8.4E-12 T 13-10-2018 IPR016087 Chalcone isomerase GO:0016872 CDG55_12880 d1257d633a17cd7daeb6868b075d7439 359 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 358 51.16 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 CDG55_12880 d1257d633a17cd7daeb6868b075d7439 359 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 353 1.6E-154 T 13-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 CDG55_12880 d1257d633a17cd7daeb6868b075d7439 359 SMART SM01329 4 354 2.2E-198 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDG55_12880 d1257d633a17cd7daeb6868b075d7439 359 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 354 2.9E-136 T 13-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 CDG55_12880 d1257d633a17cd7daeb6868b075d7439 359 SUPERFAMILY SSF53659 1 358 1.92E-119 T 13-10-2018 CDG55_12880 d1257d633a17cd7daeb6868b075d7439 359 Gene3D G3DSA:3.40.718.10 2 359 3.8E-144 T 13-10-2018 CDG55_10210 3639a0bc5d06eaf1ba6e7a2ad9ca4fe3 253 SUPERFAMILY SSF55469 24 250 4.45E-48 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDG55_10210 3639a0bc5d06eaf1ba6e7a2ad9ca4fe3 253 Pfam PF00881 Nitroreductase family 29 230 6.2E-36 T 13-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 CDG55_10210 3639a0bc5d06eaf1ba6e7a2ad9ca4fe3 253 Gene3D G3DSA:3.40.109.10 21 253 8.5E-56 T 13-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 CDG55_09370 0debebfc321855859adea396db395a54 185 Pfam PF01553 Acyltransferase 29 142 2.2E-13 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_09370 0debebfc321855859adea396db395a54 185 SMART SM00563 33 149 5.6E-17 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_09370 0debebfc321855859adea396db395a54 185 SUPERFAMILY SSF69593 25 145 4.05E-16 T 13-10-2018 CDG55_14005 87a33e4f14a49bb329d69ae28831721d 175 Pfam PF00719 Inorganic pyrophosphatase 18 173 4.1E-52 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CDG55_14005 87a33e4f14a49bb329d69ae28831721d 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.808 T 13-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CDG55_14005 87a33e4f14a49bb329d69ae28831721d 175 SUPERFAMILY SSF50324 3 174 5.49E-67 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CDG55_14005 87a33e4f14a49bb329d69ae28831721d 175 Gene3D G3DSA:3.90.80.10 1 175 8.8E-72 T 13-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 CDG55_12210 8dece8a2808c622ba36dbdf059c3fee4 601 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 14 354 1.3E-123 T 13-10-2018 IPR010839 Acyclic terpene utilisation CDG55_10715 779a50698240980be3b2842e264c4e3c 162 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 157 47.533 T 13-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 SUPERFAMILY SSF46557 3 77 1.31E-23 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 3 158 6.2E-70 T 13-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 Gene3D G3DSA:1.10.287.180 1 76 1.2E-27 T 13-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 156 5.3E-22 T 13-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 PIRSF PIRSF006092 1 158 6.2E-40 T 13-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 24.242 T 13-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 SUPERFAMILY SSF54534 80 156 5.23E-19 T 13-10-2018 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 Gene3D G3DSA:3.10.50.30 77 159 2.4E-28 T 13-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 CDG55_10715 779a50698240980be3b2842e264c4e3c 162 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 1.6E-22 T 13-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 CDG55_01510 20ff3c79a1c06342c91dcf20fd0fd7a8 373 SUPERFAMILY SSF55821 2 202 1.33E-85 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CDG55_01510 20ff3c79a1c06342c91dcf20fd0fd7a8 373 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 4 199 3.5E-75 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_01510 20ff3c79a1c06342c91dcf20fd0fd7a8 373 PIRSF PIRSF001259 2 373 2.7E-117 T 13-10-2018 CDG55_01510 20ff3c79a1c06342c91dcf20fd0fd7a8 373 Pfam PF00925 GTP cyclohydrolase II 210 365 6.5E-30 T 13-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CDG55_01510 20ff3c79a1c06342c91dcf20fd0fd7a8 373 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 5.0E-83 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_01510 20ff3c79a1c06342c91dcf20fd0fd7a8 373 SUPERFAMILY SSF142695 205 365 1.29E-35 T 13-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 CDG55_01510 20ff3c79a1c06342c91dcf20fd0fd7a8 373 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 39.044 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_01510 20ff3c79a1c06342c91dcf20fd0fd7a8 373 Gene3D G3DSA:3.90.870.10 1 206 5.3E-87 T 13-10-2018 CDG55_01645 cada9b338e103cf567456f0b76398be3 195 Pfam PF05728 Uncharacterised protein family (UPF0227) 3 191 1.7E-44 T 13-10-2018 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA CDG55_01645 cada9b338e103cf567456f0b76398be3 195 SUPERFAMILY SSF53474 2 195 7.33E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_01645 cada9b338e103cf567456f0b76398be3 195 Gene3D G3DSA:3.40.50.1820 2 194 9.4E-52 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_04775 7e4fe08c29a083894ce92867cf11b763 193 Pfam PF01195 Peptidyl-tRNA hydrolase 6 188 1.4E-54 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CDG55_04775 7e4fe08c29a083894ce92867cf11b763 193 Gene3D G3DSA:3.40.50.1470 1 193 5.2E-75 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 CDG55_04775 7e4fe08c29a083894ce92867cf11b763 193 SUPERFAMILY SSF53178 5 191 1.7E-69 T 13-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 CDG55_04775 7e4fe08c29a083894ce92867cf11b763 193 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 188 1.7E-66 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CDG55_04775 7e4fe08c29a083894ce92867cf11b763 193 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 181 35.377 T 13-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 CDG55_06675 5db33e3385de0bb41fd7606a32891e1c 76 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 10 65 6.9E-20 T 13-10-2018 IPR010260 DNA-binding transcriptional activator AlpA CDG55_14045 728ab658481f70b702288e27505eff01 208 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 24 198 1.5E-55 T 13-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG CDG55_14045 728ab658481f70b702288e27505eff01 208 Gene3D G3DSA:3.40.50.450 14 207 3.6E-70 T 13-10-2018 CDG55_14045 728ab658481f70b702288e27505eff01 208 Pfam PF03641 Possible lysine decarboxylase 67 194 1.1E-41 T 13-10-2018 IPR031100 LOG family CDG55_14045 728ab658481f70b702288e27505eff01 208 SUPERFAMILY SSF102405 23 199 7.02E-60 T 13-10-2018 CDG55_07060 188e67caaaa994c9d411b0812ead738f 623 Pfam PF13616 PPIC-type PPIASE domain 252 361 6.6E-29 T 13-10-2018 CDG55_07060 188e67caaaa994c9d411b0812ead738f 623 Gene3D G3DSA:1.10.4030.30 38 177 3.6E-12 T 13-10-2018 CDG55_07060 188e67caaaa994c9d411b0812ead738f 623 SUPERFAMILY SSF109998 41 290 5.23E-23 T 13-10-2018 IPR027304 Trigger factor/SurA domain superfamily CDG55_07060 188e67caaaa994c9d411b0812ead738f 623 Pfam PF13624 SurA N-terminal domain 1 158 1.4E-39 T 13-10-2018 CDG55_07060 188e67caaaa994c9d411b0812ead738f 623 Gene3D G3DSA:3.10.50.40 257 389 3.2E-26 T 13-10-2018 CDG55_07060 188e67caaaa994c9d411b0812ead738f 623 SUPERFAMILY SSF54534 265 359 5.76E-24 T 13-10-2018 CDG55_07605 fd22bd51319192070caf996f459b058e 380 Pfam PF01098 Cell cycle protein 39 379 4.1E-104 T 13-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_07605 fd22bd51319192070caf996f459b058e 380 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 27 380 26.95 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_07605 fd22bd51319192070caf996f459b058e 380 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 33 380 4.1E-127 T 13-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_01980 4932d747aa664a056af02fd798a2673b 83 Pfam PF06993 Protein of unknown function (DUF1304) 11 80 4.9E-18 T 13-10-2018 IPR009732 Protein of unknown function DUF1304 CDG55_14875 c6169b26116ae37fac2701ee0d7ca04c 237 Pfam PF13489 Methyltransferase domain 50 203 2.3E-25 T 13-10-2018 CDG55_14875 c6169b26116ae37fac2701ee0d7ca04c 237 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 10 235 37.624 T 13-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 CDG55_14875 c6169b26116ae37fac2701ee0d7ca04c 237 SUPERFAMILY SSF53335 14 230 1.75E-50 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_14875 c6169b26116ae37fac2701ee0d7ca04c 237 Gene3D G3DSA:3.40.50.150 10 235 8.3E-78 T 13-10-2018 CDG55_14875 c6169b26116ae37fac2701ee0d7ca04c 237 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 10 229 1.9E-90 T 13-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 CDG55_03995 fd09781b241a272122cbafdae7c3569a 144 Gene3D G3DSA:3.30.300.20 48 141 4.9E-32 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_03995 fd09781b241a272122cbafdae7c3569a 144 Pfam PF02566 OsmC-like protein 44 138 4.0E-15 T 13-10-2018 IPR003718 OsmC/Ohr family CDG55_03995 fd09781b241a272122cbafdae7c3569a 144 Gene3D G3DSA:2.20.25.10 1 47 1.2E-21 T 13-10-2018 CDG55_03995 fd09781b241a272122cbafdae7c3569a 144 SUPERFAMILY SSF82784 1 140 1.57E-43 T 13-10-2018 IPR036102 OsmC/Ohr superfamily CDG55_03995 fd09781b241a272122cbafdae7c3569a 144 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 139 4.1E-54 T 13-10-2018 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 CDG55_12100 14c0374381078f7db6d1a734f0251bb3 66 SUPERFAMILY SSF140319 3 64 4.71E-27 T 13-10-2018 IPR036762 IscX-like superfamily CDG55_12100 14c0374381078f7db6d1a734f0251bb3 66 Gene3D G3DSA:1.10.10.600 1 66 2.9E-28 T 13-10-2018 IPR036762 IscX-like superfamily CDG55_12100 14c0374381078f7db6d1a734f0251bb3 66 PIRSF PIRSF039003 3 66 2.8E-35 T 13-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 CDG55_12100 14c0374381078f7db6d1a734f0251bb3 66 Pfam PF04384 Iron-sulphur cluster assembly 3 65 7.0E-32 T 13-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 CDG55_12100 14c0374381078f7db6d1a734f0251bb3 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 65 9.9E-32 T 13-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 CDG55_13965 b00f9ede176e3301c01f0061defe3bd7 154 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 79.936 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CDG55_13965 b00f9ede176e3301c01f0061defe3bd7 154 Pfam PF03477 ATP cone domain 50 136 3.5E-17 T 13-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 CDG55_13965 b00f9ede176e3301c01f0061defe3bd7 154 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 146 3.8E-59 T 13-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 CDG55_07055 2a73c57cac0371850b260f7277f917cc 90 Gene3D G3DSA:4.10.520.10 1 90 4.6E-39 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CDG55_07055 2a73c57cac0371850b260f7277f917cc 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.8E-20 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_07055 2a73c57cac0371850b260f7277f917cc 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.8E-20 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_07055 2a73c57cac0371850b260f7277f917cc 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.8E-20 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_07055 2a73c57cac0371850b260f7277f917cc 90 SUPERFAMILY SSF47729 1 89 1.77E-34 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CDG55_07055 2a73c57cac0371850b260f7277f917cc 90 SMART SM00411 1 90 5.1E-48 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_07055 2a73c57cac0371850b260f7277f917cc 90 Pfam PF00216 Bacterial DNA-binding protein 1 89 2.8E-36 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_06610 5d698d839e735f8b198499b862d9b42e 319 PIRSF PIRSF002849 2 318 2.2E-119 T 13-10-2018 CDG55_06610 5d698d839e735f8b198499b862d9b42e 319 Gene3D G3DSA:3.40.50.300 42 206 1.8E-41 T 13-10-2018 CDG55_06610 5d698d839e735f8b198499b862d9b42e 319 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 60 190 3.7E-59 T 13-10-2018 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 CDG55_06610 5d698d839e735f8b198499b862d9b42e 319 SUPERFAMILY SSF52540 53 303 2.6E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_06610 5d698d839e735f8b198499b862d9b42e 319 Gene3D G3DSA:1.10.8.300 221 318 1.0E-22 T 13-10-2018 CDG55_10340 d6612688821cf62c8099db68d492e534 208 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 1 185 8.8E-71 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CDG55_10340 d6612688821cf62c8099db68d492e534 208 Pfam PF00551 Formyl transferase 1 176 1.6E-58 T 13-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDG55_10340 d6612688821cf62c8099db68d492e534 208 Gene3D G3DSA:3.40.50.170 1 205 2.8E-76 T 13-10-2018 CDG55_10340 d6612688821cf62c8099db68d492e534 208 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 2 183 30.542 T 13-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 CDG55_10340 d6612688821cf62c8099db68d492e534 208 SUPERFAMILY SSF53328 1 197 3.79E-63 T 13-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 CDG55_07240 760e4e8aae45a511d25b9819bdc12a89 626 Gene3D G3DSA:3.30.2010.10 89 180 1.6E-12 T 13-10-2018 CDG55_07240 760e4e8aae45a511d25b9819bdc12a89 626 Pfam PF01435 Peptidase family M48 104 316 3.0E-4 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CDG55_09010 7c76b98b5bd94b4528f9e50de1ad714b 335 Pfam PF16363 GDP-mannose 4,6 dehydratase 3 323 2.2E-41 T 13-10-2018 IPR016040 NAD(P)-binding domain CDG55_09010 7c76b98b5bd94b4528f9e50de1ad714b 335 Gene3D G3DSA:3.90.25.10 193 328 4.9E-91 T 13-10-2018 CDG55_09010 7c76b98b5bd94b4528f9e50de1ad714b 335 Gene3D G3DSA:3.40.50.720 2 273 4.9E-91 T 13-10-2018 CDG55_09010 7c76b98b5bd94b4528f9e50de1ad714b 335 SUPERFAMILY SSF51735 2 331 6.18E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09010 7c76b98b5bd94b4528f9e50de1ad714b 335 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 1 331 9.8E-80 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDG55_06075 7f4e9ef8652a69a7f9941960117e3f9b 293 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 13 291 3.7E-95 T 13-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 CDG55_06075 7f4e9ef8652a69a7f9941960117e3f9b 293 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 8 292 28.141 T 13-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 CDG55_06075 7f4e9ef8652a69a7f9941960117e3f9b 293 Pfam PF01040 UbiA prenyltransferase family 31 275 5.7E-58 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 CDG55_06075 7f4e9ef8652a69a7f9941960117e3f9b 293 Gene3D G3DSA:1.10.357.140 26 187 2.2E-40 T 13-10-2018 CDG55_09755 99c136245e8e9681619fe067edf14bc0 516 Gene3D G3DSA:3.30.1490.270 385 445 2.4E-25 T 13-10-2018 CDG55_09755 99c136245e8e9681619fe067edf14bc0 516 Pfam PF14403 Circularly permuted ATP-grasp type 2 115 489 2.0E-147 T 13-10-2018 IPR025841 Circularly permuted ATP-grasp type 2 CDG55_09755 99c136245e8e9681619fe067edf14bc0 516 PIRSF PIRSF005522 36 516 2.2E-214 T 13-10-2018 IPR016450 Uncharacterised conserved protein UCP005522 CDG55_09755 99c136245e8e9681619fe067edf14bc0 516 SUPERFAMILY SSF56059 66 504 7.73E-55 T 13-10-2018 CDG55_09755 99c136245e8e9681619fe067edf14bc0 516 Gene3D G3DSA:3.40.50.11290 250 348 1.7E-39 T 13-10-2018 CDG55_11740 1bd636201096280e3a59a4410d962381 428 PIRSF PIRSF001563 5 428 4.4E-107 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CDG55_11740 1bd636201096280e3a59a4410d962381 428 SUPERFAMILY SSF53244 291 425 2.93E-27 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_11740 1bd636201096280e3a59a4410d962381 428 SUPERFAMILY SSF53623 10 288 1.72E-84 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_11740 1bd636201096280e3a59a4410d962381 428 Gene3D G3DSA:3.40.1190.10 2 289 1.1E-89 T 13-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 CDG55_11740 1bd636201096280e3a59a4410d962381 428 TIGRFAM TIGR01499 folC: bifunctional protein FolC 31 423 9.1E-103 T 13-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 CDG55_11740 1bd636201096280e3a59a4410d962381 428 Pfam PF08245 Mur ligase middle domain 53 270 5.2E-17 T 13-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 CDG55_11740 1bd636201096280e3a59a4410d962381 428 Gene3D G3DSA:3.90.190.20 291 428 1.5E-28 T 13-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 Pfam PF00814 Glycoprotease family 25 305 4.4E-102 T 13-10-2018 IPR000905 Gcp-like domain CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 Gene3D G3DSA:3.30.420.40 3 313 2.5E-126 T 13-10-2018 CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 312 4.2E-133 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 261 270 4.3E-49 T 13-10-2018 IPR017861 Kae1/TsaD family CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 4.3E-49 T 13-10-2018 IPR017861 Kae1/TsaD family CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 4.3E-49 T 13-10-2018 IPR017861 Kae1/TsaD family CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 4.3E-49 T 13-10-2018 IPR017861 Kae1/TsaD family CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 4.3E-49 T 13-10-2018 IPR017861 Kae1/TsaD family CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 4.3E-49 T 13-10-2018 IPR017861 Kae1/TsaD family CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 SUPERFAMILY SSF53067 3 121 1.62E-29 T 13-10-2018 CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 329 63.649 T 13-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 SUPERFAMILY SSF53067 101 307 3.24E-44 T 13-10-2018 CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 Gene3D G3DSA:3.30.420.40 129 291 2.5E-126 T 13-10-2018 CDG55_06430 b0f536ca96453a0e4ff8a39566a5a549 335 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 304 2.4E-118 T 13-10-2018 IPR017861 Kae1/TsaD family CDG55_05675 e52911243df2c82344dc847dd7955055 364 Pfam PF00487 Fatty acid desaturase 75 340 9.5E-29 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 CDG55_14280 6b9e51c494e59a12ca3eb37f18424530 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 9.9E-35 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CDG55_14280 6b9e51c494e59a12ca3eb37f18424530 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 9.7E-45 T 13-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 CDG55_14280 6b9e51c494e59a12ca3eb37f18424530 156 SUPERFAMILY SSF81573 63 121 1.31E-11 T 13-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CDG55_14280 6b9e51c494e59a12ca3eb37f18424530 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 13.144 T 13-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 CDG55_14280 6b9e51c494e59a12ca3eb37f18424530 156 Gene3D G3DSA:1.20.5.620 62 122 3.7E-13 T 13-10-2018 CDG55_13410 59e80b17f96c35c445e52ee110b9c76a 201 SUPERFAMILY SSF52540 1 197 5.23E-37 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13410 59e80b17f96c35c445e52ee110b9c76a 201 Pfam PF01121 Dephospho-CoA kinase 4 178 1.1E-64 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CDG55_13410 59e80b17f96c35c445e52ee110b9c76a 201 Gene3D G3DSA:3.40.50.300 1 201 2.0E-66 T 13-10-2018 CDG55_13410 59e80b17f96c35c445e52ee110b9c76a 201 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 187 7.3E-57 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CDG55_13410 59e80b17f96c35c445e52ee110b9c76a 201 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 196 27.092 T 13-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 CDG55_11240 843f9c3e1507b1fc9412bb520da24d9d 354 Pfam PF12833 Helix-turn-helix domain 274 351 4.5E-18 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_11240 843f9c3e1507b1fc9412bb520da24d9d 354 Gene3D G3DSA:1.10.10.60 248 353 4.4E-22 T 13-10-2018 CDG55_11240 843f9c3e1507b1fc9412bb520da24d9d 354 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 41 223 5.4E-33 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_11240 843f9c3e1507b1fc9412bb520da24d9d 354 SMART SM00342 268 350 5.1E-22 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_11240 843f9c3e1507b1fc9412bb520da24d9d 354 SUPERFAMILY SSF46689 304 353 2.21E-11 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_08200 a90fe45a271a9b6aec6ddc2cbc276142 222 Pfam PF02586 SOS response associated peptidase (SRAP) 29 206 6.2E-25 T 13-10-2018 IPR003738 SOS response associated peptidase (SRAP) CDG55_08200 a90fe45a271a9b6aec6ddc2cbc276142 222 SUPERFAMILY SSF143081 22 204 2.75E-42 T 13-10-2018 IPR036590 SOS response associated peptidase-like CDG55_08200 a90fe45a271a9b6aec6ddc2cbc276142 222 Gene3D G3DSA:3.90.1680.10 1 211 6.0E-43 T 13-10-2018 IPR036590 SOS response associated peptidase-like CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 687 1.4E-228 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 2 686 24.681 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 549 5.8E-202 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 Pfam PF05746 DALR anticodon binding domain 581 678 1.8E-7 T 13-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 SUPERFAMILY SSF109604 336 488 9.0E-16 T 13-10-2018 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 244 259 3.6E-33 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 6 19 3.6E-33 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 316 332 3.6E-33 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 49 61 3.6E-33 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02900 c21f19b8ecfffe1883a3be18e2a19b9a 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 392 411 3.6E-33 T 13-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_08195 fd59bc1e908bd936b0a7c2588e463dd9 720 Gene3D G3DSA:1.20.1220.12 579 720 1.6E-70 T 13-10-2018 CDG55_08195 fd59bc1e908bd936b0a7c2588e463dd9 720 Pfam PF01274 Malate synthase 17 691 8.8E-163 T 13-10-2018 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CDG55_08195 fd59bc1e908bd936b0a7c2588e463dd9 720 Hamap MF_00641 Malate synthase G [glcB]. 1 720 381.832 T 13-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CDG55_08195 fd59bc1e908bd936b0a7c2588e463dd9 720 Gene3D G3DSA:2.170.170.11 132 261 3.2E-268 T 13-10-2018 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CDG55_08195 fd59bc1e908bd936b0a7c2588e463dd9 720 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 715 0.0 T 13-10-2018 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CDG55_08195 fd59bc1e908bd936b0a7c2588e463dd9 720 Gene3D G3DSA:3.20.20.360 10 578 3.2E-268 T 13-10-2018 CDG55_08195 fd59bc1e908bd936b0a7c2588e463dd9 720 SUPERFAMILY SSF51645 4 716 5.1E-293 T 13-10-2018 IPR011076 Malate synthase-like superfamily GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7854 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 PIRSF PIRSF000521 122 159 0.28 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 PIRSF PIRSF000521 23 121 9.4E-4 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 PIRSF PIRSF000521 161 401 3.6E-36 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 14 398 1.5E-154 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 Pfam PF00202 Aminotransferase class-III 24 398 1.3E-121 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 6 400 3.4E-219 T 13-10-2018 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 SUPERFAMILY SSF53383 14 399 6.45E-127 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 Gene3D G3DSA:3.90.1150.10 24 391 4.4E-151 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 Gene3D G3DSA:3.40.640.10 58 303 4.4E-151 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_10645 d33c6c40a8bbdbf58d0309e9c6d6e0af 401 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 401 69.979 T 13-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Gene3D G3DSA:1.10.730.10 14 807 0.0 T 13-10-2018 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Gene3D G3DSA:3.10.20.590 815 874 2.6E-19 T 13-10-2018 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Pfam PF09334 tRNA synthetases class I (M) 41 177 4.9E-19 T 13-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 SUPERFAMILY SSF50677 232 427 8.27E-52 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Gene3D G3DSA:3.10.330.110 583 645 0.0 T 13-10-2018 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 SUPERFAMILY SSF52374 10 685 4.38E-144 T 13-10-2018 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Pfam PF08264 Anticodon-binding domain of tRNA 718 834 5.9E-11 T 13-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 227 417 1.0E-72 T 13-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 432 588 3.9E-7 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 635 675 5.7E-7 T 13-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 10 874 0.0 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 132 149 1.3E-48 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 540 562 1.3E-48 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 501 519 1.3E-48 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 158 174 1.3E-48 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 190 203 1.3E-48 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 573 583 1.3E-48 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 PRINTS PR00985 Leucyl-tRNA synthetase signature 221 240 1.3E-48 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Gene3D G3DSA:3.90.740.10 233 428 0.0 T 13-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Gene3D G3DSA:3.40.50.620 38 582 0.0 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 SUPERFAMILY SSF47323 679 874 2.24E-25 T 13-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_12700 035fa1c751ba68116bbf45bbe4cdaae9 874 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 9 874 22.84 T 13-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 CDG55_02180 d246eacae5121c1b33f43e84d8e9e3f0 387 Gene3D G3DSA:1.10.150.130 92 203 1.1E-26 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_02180 d246eacae5121c1b33f43e84d8e9e3f0 387 Pfam PF00589 Phage integrase family 224 366 1.8E-17 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_02180 d246eacae5121c1b33f43e84d8e9e3f0 387 SUPERFAMILY SSF56349 97 376 2.56E-57 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_02180 d246eacae5121c1b33f43e84d8e9e3f0 387 Gene3D G3DSA:3.30.160.390 1 87 8.8E-30 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CDG55_02180 d246eacae5121c1b33f43e84d8e9e3f0 387 Pfam PF13356 Arm DNA-binding domain 2 86 1.1E-19 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CDG55_02180 d246eacae5121c1b33f43e84d8e9e3f0 387 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 97 145 5.6E-6 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDG55_02180 d246eacae5121c1b33f43e84d8e9e3f0 387 Gene3D G3DSA:1.10.443.10 204 377 1.0E-13 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_00450 f2abcb6adc981f6a92b2f75f79a1aee4 341 Pfam PF00665 Integrase core domain 180 285 2.7E-15 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CDG55_00450 f2abcb6adc981f6a92b2f75f79a1aee4 341 Gene3D G3DSA:3.30.420.10 172 333 1.6E-10 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_00450 f2abcb6adc981f6a92b2f75f79a1aee4 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 13-10-2018 IPR025246 Transposase IS30-like HTH domain CDG55_00450 f2abcb6adc981f6a92b2f75f79a1aee4 341 SUPERFAMILY SSF53098 180 326 1.52E-27 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 Gene3D G3DSA:1.10.10.10 2 53 2.2E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 6.4E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 6.4E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 6.4E-8 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 SUPERFAMILY SSF46785 1 56 1.26E-12 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 SUPERFAMILY SSF54909 64 139 7.15E-12 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 2.6E-10 T 13-10-2018 CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 Pfam PF01037 Lrp/AsnC ligand binding domain 68 137 3.0E-10 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 Gene3D G3DSA:3.30.70.920 57 140 2.9E-13 T 13-10-2018 CDG55_10655 ce58082dfc36182bfc5d7c0690dec73c 140 SMART SM00344 1 107 7.8E-11 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDG55_11300 55e3e8a7c4aab4e4548df580888bf8b4 484 SMART SM00316 37 113 7.6E-13 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_11300 55e3e8a7c4aab4e4548df580888bf8b4 484 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 420 1.2E-152 T 13-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 CDG55_11300 55e3e8a7c4aab4e4548df580888bf8b4 484 Gene3D G3DSA:2.40.50.140 31 118 6.6E-26 T 13-10-2018 CDG55_11300 55e3e8a7c4aab4e4548df580888bf8b4 484 Pfam PF00575 S1 RNA binding domain 38 111 2.7E-6 T 13-10-2018 IPR003029 S1 domain GO:0003676 CDG55_11300 55e3e8a7c4aab4e4548df580888bf8b4 484 SUPERFAMILY SSF50249 39 118 7.76E-19 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_11300 55e3e8a7c4aab4e4548df580888bf8b4 484 Pfam PF10150 Ribonuclease E/G family 115 387 2.6E-102 T 13-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 CDG55_11650 f52f78d658e0baaf9f5e2aea8b3e53f8 401 SUPERFAMILY SSF53901 4 399 1.36E-62 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_11650 f52f78d658e0baaf9f5e2aea8b3e53f8 401 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 399 7.9E-132 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_11650 f52f78d658e0baaf9f5e2aea8b3e53f8 401 Pfam PF02803 Thiolase, C-terminal domain 278 399 1.2E-46 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CDG55_11650 f52f78d658e0baaf9f5e2aea8b3e53f8 401 Gene3D G3DSA:3.40.47.10 6 298 1.7E-143 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_11650 f52f78d658e0baaf9f5e2aea8b3e53f8 401 PIRSF PIRSF000429 1 401 1.6E-112 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_11650 f52f78d658e0baaf9f5e2aea8b3e53f8 401 Gene3D G3DSA:3.40.47.10 125 396 1.7E-143 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_11650 f52f78d658e0baaf9f5e2aea8b3e53f8 401 Pfam PF00108 Thiolase, N-terminal domain 5 270 3.1E-48 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CDG55_01230 63d235ef2a140b70733135c190d510cb 111 Gene3D G3DSA:2.60.300.12 5 111 1.5E-32 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CDG55_01230 63d235ef2a140b70733135c190d510cb 111 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 6 110 1.7E-37 T 13-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 CDG55_01230 63d235ef2a140b70733135c190d510cb 111 Pfam PF01521 Iron-sulphur cluster biosynthesis 6 106 2.6E-18 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CDG55_01230 63d235ef2a140b70733135c190d510cb 111 SUPERFAMILY SSF89360 5 100 9.02E-30 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CDG55_01230 63d235ef2a140b70733135c190d510cb 111 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 111 33.095 T 13-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 CDG55_13395 e7b02bf24ab994d2cae7448fcca6241d 571 Gene3D G3DSA:3.30.450.90 158 293 1.3E-47 T 13-10-2018 CDG55_13395 e7b02bf24ab994d2cae7448fcca6241d 571 Pfam PF00437 Type II/IV secretion system protein 194 460 4.4E-90 T 13-10-2018 IPR001482 Type II/IV secretion system protein CDG55_13395 e7b02bf24ab994d2cae7448fcca6241d 571 SUPERFAMILY SSF160246 6 148 7.06E-33 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily CDG55_13395 e7b02bf24ab994d2cae7448fcca6241d 571 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 46 150 7.3E-15 T 13-10-2018 IPR007831 General secretory system II, protein E, N-terminal CDG55_13395 e7b02bf24ab994d2cae7448fcca6241d 571 Gene3D G3DSA:3.30.300.160 67 148 5.1E-9 T 13-10-2018 CDG55_13395 e7b02bf24ab994d2cae7448fcca6241d 571 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 13 570 2.7E-260 T 13-10-2018 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 CDG55_13395 e7b02bf24ab994d2cae7448fcca6241d 571 SUPERFAMILY SSF52540 182 569 2.62E-99 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13395 e7b02bf24ab994d2cae7448fcca6241d 571 Gene3D G3DSA:3.40.50.300 296 571 2.3E-104 T 13-10-2018 CDG55_09035 89f80bb435287764be2656a64ad3759d 160 SUPERFAMILY SSF46785 7 144 1.6E-43 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_09035 89f80bb435287764be2656a64ad3759d 160 Pfam PF01638 HxlR-like helix-turn-helix 19 105 2.2E-24 T 13-10-2018 IPR002577 Helix-turn-helix, HxlR type CDG55_09035 89f80bb435287764be2656a64ad3759d 160 Gene3D G3DSA:1.10.10.10 2 160 3.7E-53 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_02070 6e9aa6c2e8d6e48ee3423c6a0a061635 175 Pfam PF07603 Protein of unknown function (DUF1566) 50 172 3.2E-26 T 13-10-2018 IPR011460 Protein of unknown function DUF1566 CDG55_04900 6e9aa6c2e8d6e48ee3423c6a0a061635 175 Pfam PF07603 Protein of unknown function (DUF1566) 50 172 3.2E-26 T 13-10-2018 IPR011460 Protein of unknown function DUF1566 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 SUPERFAMILY SSF53901 266 389 2.65E-43 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 Gene3D G3DSA:3.40.47.10 138 384 6.3E-141 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 Pfam PF00108 Thiolase, N-terminal domain 9 257 3.6E-73 T 13-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 Gene3D G3DSA:3.40.47.10 9 271 6.3E-141 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 SUPERFAMILY SSF53901 5 261 2.47E-72 T 13-10-2018 IPR016039 Thiolase-like GO:0003824 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 6 390 61.426 T 13-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 11 388 3.9E-129 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 Pfam PF02803 Thiolase, C-terminal domain 265 389 7.5E-47 T 13-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 PIRSF PIRSF000429 3 390 2.2E-122 T 13-10-2018 IPR002155 Thiolase GO:0016747 CDG55_13525 b36dc00e430ddcdcfc5bf98ecae421a8 390 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 8 390 3.0E-191 T 13-10-2018 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 CDG55_05535 7fdc3ef7d17bf94baf9d93a13ced5bac 233 Pfam PF01988 VIT family 18 225 6.8E-55 T 13-10-2018 IPR008217 Ccc1 family CDG55_12430 073c838be5388500f1234328f656ad8e 51 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 15.423 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12430 073c838be5388500f1234328f656ad8e 51 Pfam PF00471 Ribosomal protein L33 4 49 2.8E-18 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12430 073c838be5388500f1234328f656ad8e 51 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 3 51 3.6E-25 T 13-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12430 073c838be5388500f1234328f656ad8e 51 Gene3D G3DSA:2.20.28.120 1 51 2.6E-28 T 13-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12430 073c838be5388500f1234328f656ad8e 51 SUPERFAMILY SSF57829 1 49 6.71E-19 T 13-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 CDG55_08490 09f21baa981179ce0de3600b6c504c23 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 22 277 1.7E-113 T 13-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDG55_08490 09f21baa981179ce0de3600b6c504c23 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 17 279 48.055 T 13-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDG55_08490 09f21baa981179ce0de3600b6c504c23 285 SUPERFAMILY SSF51569 8 281 1.74E-99 T 13-10-2018 CDG55_08490 09f21baa981179ce0de3600b6c504c23 285 Gene3D G3DSA:3.20.20.70 3 285 2.6E-95 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_08490 09f21baa981179ce0de3600b6c504c23 285 Pfam PF00793 DAHP synthetase I family 14 276 5.0E-71 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDG55_09470 f88e4321a272c7db6ef819aeda352785 139 Gene3D G3DSA:2.170.150.20 2 139 2.0E-64 T 13-10-2018 CDG55_09470 f88e4321a272c7db6ef819aeda352785 139 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 137 5.8E-59 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDG55_09470 f88e4321a272c7db6ef819aeda352785 139 Pfam PF01641 SelR domain 10 128 6.0E-57 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDG55_09470 f88e4321a272c7db6ef819aeda352785 139 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 38.03 T 13-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 CDG55_09470 f88e4321a272c7db6ef819aeda352785 139 SUPERFAMILY SSF51316 5 138 6.28E-61 T 13-10-2018 IPR011057 Mss4-like superfamily CDG55_01780 4ae852b29b26b4039b5e16fde07d3351 365 Gene3D G3DSA:3.40.50.2000 9 186 5.8E-60 T 13-10-2018 CDG55_01780 4ae852b29b26b4039b5e16fde07d3351 365 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 195 353 1.4E-37 T 13-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 CDG55_01780 4ae852b29b26b4039b5e16fde07d3351 365 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 6 362 1.7E-105 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_01780 4ae852b29b26b4039b5e16fde07d3351 365 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 12 365 34.082 T 13-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_01780 4ae852b29b26b4039b5e16fde07d3351 365 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 12 148 7.7E-43 T 13-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_01780 4ae852b29b26b4039b5e16fde07d3351 365 SUPERFAMILY SSF53756 10 364 1.68E-114 T 13-10-2018 CDG55_01780 4ae852b29b26b4039b5e16fde07d3351 365 Gene3D G3DSA:3.40.50.2000 187 349 3.4E-47 T 13-10-2018 CDG55_08525 71caa2f06d40fd8485b789684eb97e4c 298 Gene3D G3DSA:3.60.15.10 10 296 2.5E-100 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_08525 71caa2f06d40fd8485b789684eb97e4c 298 SMART SM00849 23 213 5.8E-21 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_08525 71caa2f06d40fd8485b789684eb97e4c 298 Pfam PF00753 Metallo-beta-lactamase superfamily 22 213 7.1E-19 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_08525 71caa2f06d40fd8485b789684eb97e4c 298 SUPERFAMILY SSF56281 20 262 2.38E-44 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 SUPERFAMILY SSF54768 115 229 3.3E-26 T 13-10-2018 CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 Gene3D G3DSA:1.10.1520.10 8 155 2.1E-45 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 15 228 3.5E-71 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 Pfam PF14622 Ribonuclease-III-like 26 136 2.8E-33 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 SMART SM00535 26 156 9.2E-49 T 13-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 SMART SM00358 163 230 7.2E-18 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 Gene3D G3DSA:3.30.160.20 161 231 3.5E-17 T 13-10-2018 CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 SUPERFAMILY SSF69065 9 165 5.93E-48 T 13-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 Pfam PF00035 Double-stranded RNA binding motif 163 229 6.8E-11 T 13-10-2018 IPR014720 Double-stranded RNA-binding domain CDG55_10080 2aa7654153d933827ccc07c4f819c9b7 231 Hamap MF_00104 Ribonuclease 3 [rnc]. 14 226 29.33 T 13-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 CDG55_07160 71edb93d1c783be9323a8af359b09f58 73 Pfam PF09397 Ftsk gamma domain 3 49 1.2E-11 T 13-10-2018 IPR018541 FtsK gamma domain CDG55_07160 71edb93d1c783be9323a8af359b09f58 73 SMART SM00843 1 57 4.8E-4 T 13-10-2018 IPR018541 FtsK gamma domain CDG55_07160 71edb93d1c783be9323a8af359b09f58 73 Gene3D G3DSA:1.10.10.10 1 54 2.7E-11 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07160 71edb93d1c783be9323a8af359b09f58 73 SUPERFAMILY SSF46785 3 49 2.72E-8 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_09775 a4b27c1331fd44c7f70d77b1b90d79c5 388 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 367 26.016 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 CDG55_09775 a4b27c1331fd44c7f70d77b1b90d79c5 388 Gene3D G3DSA:3.30.930.10 4 328 2.3E-57 T 13-10-2018 CDG55_09775 a4b27c1331fd44c7f70d77b1b90d79c5 388 PIRSF PIRSF001549 6 375 2.5E-33 T 13-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 CDG55_09775 a4b27c1331fd44c7f70d77b1b90d79c5 388 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 15 323 3.3E-82 T 13-10-2018 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 CDG55_09775 a4b27c1331fd44c7f70d77b1b90d79c5 388 Pfam PF13393 Histidyl-tRNA synthetase 12 322 2.9E-98 T 13-10-2018 CDG55_09775 a4b27c1331fd44c7f70d77b1b90d79c5 388 SUPERFAMILY SSF55681 7 319 2.79E-47 T 13-10-2018 CDG55_12865 b777b9856e859f458e4de8d9ec99eced 73 SUPERFAMILY SSF50249 4 71 4.0E-29 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_12865 b777b9856e859f458e4de8d9ec99eced 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 2 73 27.121 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CDG55_12865 b777b9856e859f458e4de8d9ec99eced 73 Pfam PF01176 Translation initiation factor 1A / IF-1 8 71 1.4E-28 T 13-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 CDG55_12865 b777b9856e859f458e4de8d9ec99eced 73 Gene3D G3DSA:2.40.50.140 2 71 2.0E-37 T 13-10-2018 CDG55_12865 b777b9856e859f458e4de8d9ec99eced 73 SMART SM00316 5 73 1.9E-7 T 13-10-2018 IPR022967 RNA-binding domain, S1 CDG55_12865 b777b9856e859f458e4de8d9ec99eced 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 4 71 2.3E-38 T 13-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 CDG55_02310 d740c386fcb22cd1bc156d7cef4e132d 235 Pfam PF03591 AzlC protein 25 160 8.2E-31 T 13-10-2018 IPR011606 Branched-chain amino acid transport, permease CDG55_02825 9ad700edae66c95f78197193a8b7d40b 403 Gene3D G3DSA:1.20.1720.10 11 385 6.3E-66 T 13-10-2018 CDG55_02825 9ad700edae66c95f78197193a8b7d40b 403 Pfam PF07690 Major Facilitator Superfamily 17 352 2.3E-38 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_02825 9ad700edae66c95f78197193a8b7d40b 403 SUPERFAMILY SSF103473 12 388 1.83E-55 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_12345 94941df8910c6f5d989ec1d1f2e75190 99 SUPERFAMILY SSF54909 1 95 1.25E-18 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_12345 94941df8910c6f5d989ec1d1f2e75190 99 Gene3D G3DSA:3.30.70.100 1 90 7.2E-25 T 13-10-2018 CDG55_09405 4111375cf6d75b64f05308950e3a60e4 177 Pfam PF06127 Protein of unknown function (DUF962) 1 146 4.9E-26 T 13-10-2018 IPR009305 Protein of unknown function DUF962 CDG55_03175 a7060ec685577080daa015d2419fa119 101 Gene3D G3DSA:4.10.830.10 41 101 5.8E-22 T 13-10-2018 CDG55_03175 a7060ec685577080daa015d2419fa119 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 2.4E-25 T 13-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03175 a7060ec685577080daa015d2419fa119 101 SUPERFAMILY SSF57716 2 101 1.07E-38 T 13-10-2018 CDG55_03175 a7060ec685577080daa015d2419fa119 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 27.772 T 13-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid CDG55_05925 670740642268b573b1f6876cab682c8c 250 SUPERFAMILY SSF55811 72 239 1.04E-43 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_05925 670740642268b573b1f6876cab682c8c 250 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 87 118 1.3E-11 T 13-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 CDG55_05925 670740642268b573b1f6876cab682c8c 250 Pfam PF00293 NUDIX domain 125 229 1.4E-17 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_05925 670740642268b573b1f6876cab682c8c 250 Gene3D G3DSA:3.90.79.20 3 119 5.0E-20 T 13-10-2018 CDG55_05925 670740642268b573b1f6876cab682c8c 250 Gene3D G3DSA:3.90.79.10 120 250 4.8E-39 T 13-10-2018 CDG55_14390 c64f866bf3ec1d5e5cf76559ba23fa7a 122 Pfam PF04076 Bacterial OB fold (BOF) protein 31 119 2.9E-18 T 13-10-2018 IPR005220 Bacterial OB-fold CDG55_14390 c64f866bf3ec1d5e5cf76559ba23fa7a 122 SUPERFAMILY SSF101756 35 119 2.88E-21 T 13-10-2018 IPR036700 Bacterial OB-fold superfamily CDG55_14390 c64f866bf3ec1d5e5cf76559ba23fa7a 122 Gene3D G3DSA:2.40.50.200 17 120 1.7E-23 T 13-10-2018 IPR036700 Bacterial OB-fold superfamily CDG55_07830 749ae6f6cfcdba64b6e1952021674131 56 Gene3D G3DSA:2.10.70.10 19 56 2.2E-17 T 13-10-2018 CDG55_07830 749ae6f6cfcdba64b6e1952021674131 56 Pfam PF10636 Hemin uptake protein hemP 21 56 6.8E-16 T 13-10-2018 IPR019600 Hemin uptake protein HemP CDG55_05435 f84ed33a0fb22ab8e0052aaa2bd7e7ff 146 Gene3D G3DSA:1.10.260.40 19 96 2.9E-14 T 13-10-2018 CDG55_05435 f84ed33a0fb22ab8e0052aaa2bd7e7ff 146 SUPERFAMILY SSF47413 57 97 3.85E-5 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_11595 7fe2b92bc9aac30c24ccc3d7a273c4ac 401 SUPERFAMILY SSF103365 15 401 7.06E-131 T 13-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 CDG55_11595 7fe2b92bc9aac30c24ccc3d7a273c4ac 401 Pfam PF01139 tRNA-splicing ligase RtcB 31 401 1.9E-130 T 13-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 CDG55_11595 7fe2b92bc9aac30c24ccc3d7a273c4ac 401 Gene3D G3DSA:3.90.1860.10 3 401 7.1E-115 T 13-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 CDG55_03855 9c7ec78ea1ddbf1c99514c0c680c4b7a 179 Gene3D G3DSA:1.10.60.30 30 105 2.4E-20 T 13-10-2018 CDG55_03855 9c7ec78ea1ddbf1c99514c0c680c4b7a 179 SUPERFAMILY SSF158710 31 173 4.45E-35 T 13-10-2018 IPR023153 PSPTO4464-like domain superfamily CDG55_03855 9c7ec78ea1ddbf1c99514c0c680c4b7a 179 PIRSF PIRSF016183 4 178 7.2E-40 T 13-10-2018 IPR006839 Ribosome-associated, YjgA CDG55_03855 9c7ec78ea1ddbf1c99514c0c680c4b7a 179 Pfam PF04751 Protein of unknown function (DUF615) 20 152 1.3E-32 T 13-10-2018 IPR006839 Ribosome-associated, YjgA CDG55_03575 52c0fbf7a63f7523ac1391fecb65c5bf 658 Gene3D G3DSA:2.60.40.10 369 465 1.6E-6 T 13-10-2018 IPR013783 Immunoglobulin-like fold CDG55_03575 52c0fbf7a63f7523ac1391fecb65c5bf 658 Gene3D G3DSA:2.60.40.10 49 152 1.2E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold CDG55_03575 52c0fbf7a63f7523ac1391fecb65c5bf 658 SUPERFAMILY SSF49373 70 148 9.42E-5 T 13-10-2018 IPR008964 Invasin/intimin cell-adhesion fragments CDG55_03575 52c0fbf7a63f7523ac1391fecb65c5bf 658 Pfam PF02369 Bacterial Ig-like domain (group 1) 67 144 3.7E-8 T 13-10-2018 IPR003344 Big-1 (bacterial Ig-like domain 1) domain CDG55_05025 e259711ece187fad264bbaa578f34d33 156 SUPERFAMILY SSF47973 6 149 3.79E-59 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily CDG55_05025 e259711ece187fad264bbaa578f34d33 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.086 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CDG55_05025 e259711ece187fad264bbaa578f34d33 156 PIRSF PIRSF002122 3 156 3.7E-58 T 13-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 CDG55_05025 e259711ece187fad264bbaa578f34d33 156 Gene3D G3DSA:1.10.455.10 2 155 2.0E-59 T 13-10-2018 IPR036823 Ribosomal protein S7 domain superfamily CDG55_05025 e259711ece187fad264bbaa578f34d33 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 2.1E-67 T 13-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 CDG55_05025 e259711ece187fad264bbaa578f34d33 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.9E-64 T 13-10-2018 IPR023798 Ribosomal protein S7 domain CDG55_06780 9b0fc825d7cacec74c205ce726a8d6b3 821 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 131 237 1.1E-16 T 13-10-2018 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0016627|GO:0050660|GO:0055114 CDG55_06780 9b0fc825d7cacec74c205ce726a8d6b3 821 Gene3D G3DSA:1.20.140.10 366 512 7.9E-92 T 13-10-2018 CDG55_06780 9b0fc825d7cacec74c205ce726a8d6b3 821 SUPERFAMILY SSF47203 366 517 1.61E-23 T 13-10-2018 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal GO:0016627|GO:0055114 CDG55_06780 9b0fc825d7cacec74c205ce726a8d6b3 821 Pfam PF09317 Domain of unknown function (DUF1974) 520 804 1.5E-94 T 13-10-2018 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.8.8+1.3.8.7|KEGG: 00280+1.3.8.7|KEGG: 00410+1.3.8.7|KEGG: 00640+1.3.8.7|MetaCyc: PWY-7094|MetaCyc: PWY-7654 CDG55_06780 9b0fc825d7cacec74c205ce726a8d6b3 821 Gene3D G3DSA:1.10.540.10 128 240 7.9E-92 T 13-10-2018 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily GO:0016627|GO:0050660|GO:0055114 CDG55_06780 9b0fc825d7cacec74c205ce726a8d6b3 821 SUPERFAMILY SSF56645 130 361 4.32E-42 T 13-10-2018 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily GO:0016627|GO:0055114 CDG55_06780 9b0fc825d7cacec74c205ce726a8d6b3 821 Gene3D G3DSA:2.40.110.10 241 365 7.9E-92 T 13-10-2018 CDG55_06780 9b0fc825d7cacec74c205ce726a8d6b3 821 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 366 507 5.2E-13 T 13-10-2018 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 CDG55_13105 76cf3f20bf010b3cf691ac6e2a2967f6 292 Gene3D G3DSA:3.40.50.1860 114 227 5.7E-76 T 13-10-2018 CDG55_13105 76cf3f20bf010b3cf691ac6e2a2967f6 292 SUPERFAMILY SSF53681 22 125 8.83E-34 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDG55_13105 76cf3f20bf010b3cf691ac6e2a2967f6 292 Hamap MF_00258 Glutamate racemase [murI]. 21 279 34.177 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDG55_13105 76cf3f20bf010b3cf691ac6e2a2967f6 292 SUPERFAMILY SSF53681 127 268 8.34E-30 T 13-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDG55_13105 76cf3f20bf010b3cf691ac6e2a2967f6 292 TIGRFAM TIGR00067 glut_race: glutamate racemase 23 265 6.5E-66 T 13-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDG55_13105 76cf3f20bf010b3cf691ac6e2a2967f6 292 Pfam PF01177 Asp/Glu/Hydantoin racemase 23 235 1.6E-27 T 13-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 CDG55_13105 76cf3f20bf010b3cf691ac6e2a2967f6 292 Gene3D G3DSA:3.40.50.1860 22 255 5.7E-76 T 13-10-2018 CDG55_13945 600ea57305e0fa1c72e0536f668ea6df 219 Gene3D G3DSA:2.40.30.20 1 88 1.3E-27 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_13945 600ea57305e0fa1c72e0536f668ea6df 219 Gene3D G3DSA:2.40.30.20 101 205 5.7E-34 T 13-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 CDG55_13945 600ea57305e0fa1c72e0536f668ea6df 219 Pfam PF00677 Lumazine binding domain 3 86 9.4E-22 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_13945 600ea57305e0fa1c72e0536f668ea6df 219 Pfam PF00677 Lumazine binding domain 99 183 8.9E-24 T 13-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_13945 600ea57305e0fa1c72e0536f668ea6df 219 PIRSF PIRSF000498 1 212 7.9E-78 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_13945 600ea57305e0fa1c72e0536f668ea6df 219 SUPERFAMILY SSF63380 92 193 2.13E-31 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_13945 600ea57305e0fa1c72e0536f668ea6df 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 1.2E-63 T 13-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_13945 600ea57305e0fa1c72e0536f668ea6df 219 SUPERFAMILY SSF63380 1 88 1.36E-26 T 13-10-2018 IPR017938 Riboflavin synthase-like beta-barrel CDG55_03820 d2908ca49bfbdab4a6f7d50d210a0f70 142 Gene3D G3DSA:1.10.150.280 70 141 6.5E-23 T 13-10-2018 CDG55_03820 d2908ca49bfbdab4a6f7d50d210a0f70 142 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 78 141 7.3E-24 T 13-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain CDG55_03820 d2908ca49bfbdab4a6f7d50d210a0f70 142 Pfam PF12836 Helix-hairpin-helix motif 80 140 1.2E-22 T 13-10-2018 CDG55_03820 d2908ca49bfbdab4a6f7d50d210a0f70 142 SUPERFAMILY SSF47781 69 139 1.78E-28 T 13-10-2018 IPR010994 RuvA domain 2-like CDG55_03820 d2908ca49bfbdab4a6f7d50d210a0f70 142 SMART SM00278 90 109 0.046 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_03820 d2908ca49bfbdab4a6f7d50d210a0f70 142 SMART SM00278 120 139 5.9 T 13-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 CDG55_07110 a16f366c6888d9808161240f646389a0 221 SUPERFAMILY SSF51735 3 206 2.83E-32 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_07110 a16f366c6888d9808161240f646389a0 221 Gene3D G3DSA:3.40.50.720 2 221 3.0E-47 T 13-10-2018 CDG55_07110 a16f366c6888d9808161240f646389a0 221 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 8 84 8.8E-7 T 13-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 CDG55_10250 3d753402701816d985fc92883e7fbc05 135 Pfam PF03061 Thioesterase superfamily 19 101 4.0E-15 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CDG55_10250 3d753402701816d985fc92883e7fbc05 135 SUPERFAMILY SSF54637 2 129 6.9E-38 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_10250 3d753402701816d985fc92883e7fbc05 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 114 2.1E-25 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CDG55_10250 3d753402701816d985fc92883e7fbc05 135 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 5 126 2.2E-46 T 13-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 CDG55_10250 3d753402701816d985fc92883e7fbc05 135 Gene3D G3DSA:3.10.129.10 1 134 4.1E-40 T 13-10-2018 CDG55_10250 3d753402701816d985fc92883e7fbc05 135 PIRSF PIRSF003230 1 135 2.1E-52 T 13-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 CDG55_10445 7fe440936d2b0bdea026ff7d4d690d15 193 Gene3D G3DSA:1.10.3210.10 7 161 6.0E-10 T 13-10-2018 CDG55_10445 7fe440936d2b0bdea026ff7d4d690d15 193 SUPERFAMILY SSF109604 22 141 1.31E-11 T 13-10-2018 CDG55_13675 acbcbb521d22da4e6d3e524f8b4f698a 231 Pfam PF00687 Ribosomal protein L1p/L10e family 35 220 1.7E-49 T 13-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CDG55_13675 acbcbb521d22da4e6d3e524f8b4f698a 231 Gene3D G3DSA:3.30.190.20 21 225 3.7E-76 T 13-10-2018 CDG55_13675 acbcbb521d22da4e6d3e524f8b4f698a 231 Gene3D G3DSA:3.40.50.790 68 159 3.7E-76 T 13-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CDG55_13675 acbcbb521d22da4e6d3e524f8b4f698a 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 1.6E-100 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CDG55_13675 acbcbb521d22da4e6d3e524f8b4f698a 231 PIRSF PIRSF002155 1 227 2.7E-74 T 13-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_13675 acbcbb521d22da4e6d3e524f8b4f698a 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.096 T 13-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 CDG55_13675 acbcbb521d22da4e6d3e524f8b4f698a 231 SUPERFAMILY SSF56808 6 227 4.84E-79 T 13-10-2018 IPR023674 Ribosomal protein L1-like CDG55_10845 42483161c82eb7519edbe315c021cf71 297 Pfam PF04228 Putative neutral zinc metallopeptidase 1 296 4.1E-114 T 13-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative CDG55_05585 2c60bac6e0707506ce78df0820a494f6 272 SUPERFAMILY SSF54506 2 271 8.03E-68 T 13-10-2018 CDG55_05585 2c60bac6e0707506ce78df0820a494f6 272 Pfam PF02567 Phenazine biosynthesis-like protein 6 267 1.4E-52 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDG55_05585 2c60bac6e0707506ce78df0820a494f6 272 Gene3D G3DSA:3.10.310.10 117 260 3.6E-81 T 13-10-2018 CDG55_05585 2c60bac6e0707506ce78df0820a494f6 272 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 2 270 2.0E-37 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDG55_05585 2c60bac6e0707506ce78df0820a494f6 272 PIRSF PIRSF016184 1 272 8.0E-47 T 13-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 CDG55_05585 2c60bac6e0707506ce78df0820a494f6 272 Gene3D G3DSA:3.10.310.10 4 267 3.6E-81 T 13-10-2018 CDG55_11905 3a6f8af774f14e0747dfabb8eb89af29 287 Pfam PF02485 Core-2/I-Branching enzyme 13 261 2.8E-24 T 13-10-2018 IPR003406 Glycosyl transferase, family 14 GO:0008375|GO:0016020 CDG55_02010 fe7ad57eaa67e0125b34f33896d14445 432 Gene3D G3DSA:3.50.50.60 1 281 1.0E-20 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_02010 fe7ad57eaa67e0125b34f33896d14445 432 SUPERFAMILY SSF51905 2 407 5.92E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_02010 fe7ad57eaa67e0125b34f33896d14445 432 Pfam PF01593 Flavin containing amine oxidoreductase 10 269 4.6E-15 T 13-10-2018 IPR002937 Amine oxidase GO:0016491|GO:0055114 CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 Gene3D G3DSA:2.30.33.40 1 96 5.9E-36 T 13-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 Pfam PF00166 Chaperonin 10 Kd subunit 3 93 6.9E-34 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 SUPERFAMILY SSF50129 2 95 3.06E-33 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 PRINTS PR00297 10kDa chaperonin signature 26 47 8.3E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 PRINTS PR00297 10kDa chaperonin signature 60 72 8.3E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 PRINTS PR00297 10kDa chaperonin signature 4 19 8.3E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 PRINTS PR00297 10kDa chaperonin signature 81 94 8.3E-33 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 SMART SM00883 3 94 1.1E-56 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_05425 55302222e0ebca6d648bbf2fd31ae1ed 96 Hamap MF_00580 10 kDa chaperonin [groS]. 3 95 26.705 T 13-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 Pfam PF07549 SecD/SecF GG Motif 115 139 2.6E-7 T 13-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 SUPERFAMILY SSF82866 428 626 1.44E-45 T 13-10-2018 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 PRINTS PR00702 Acriflavin resistance protein family signature 520 544 8.8E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 8.8E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 PRINTS PR00702 Acriflavin resistance protein family signature 595 618 8.8E-8 T 13-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 122 618 5.7E-134 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 Gene3D G3DSA:1.20.1640.10 468 622 2.7E-13 T 13-10-2018 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 Pfam PF02355 Protein export membrane protein 455 620 6.7E-18 T 13-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 356 611 2.4E-70 T 13-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 Pfam PF13721 SecD export protein N-terminal TM region 2 102 1.6E-35 T 13-10-2018 IPR027398 SecD export protein N-terminal TM domain CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 Gene3D G3DSA:3.30.1360.200 279 449 9.1E-48 T 13-10-2018 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 632 49.645 T 13-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 CDG55_12040 be1a87472b4fc59dd4a79dae2dd5e998 633 Gene3D G3DSA:3.30.70.3400 221 455 9.1E-48 T 13-10-2018 CDG55_02000 8ccee9c5ab31588b39c53e351100dc2c 194 Pfam PF00436 Single-strand binding protein family 4 108 1.1E-39 T 13-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 CDG55_02000 8ccee9c5ab31588b39c53e351100dc2c 194 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 1 194 3.9E-51 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CDG55_02000 8ccee9c5ab31588b39c53e351100dc2c 194 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 35.427 T 13-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 CDG55_02000 8ccee9c5ab31588b39c53e351100dc2c 194 SUPERFAMILY SSF50249 2 194 6.51E-52 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_02000 8ccee9c5ab31588b39c53e351100dc2c 194 Gene3D G3DSA:2.40.50.140 1 123 1.4E-44 T 13-10-2018 CDG55_09730 2e50391e5275702c3e493fb360619f9c 481 Pfam PF00772 DnaB-like helicase N terminal domain 31 133 2.9E-28 T 13-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 CDG55_09730 2e50391e5275702c3e493fb360619f9c 481 Gene3D G3DSA:3.40.50.300 190 475 4.6E-102 T 13-10-2018 CDG55_09730 2e50391e5275702c3e493fb360619f9c 481 SUPERFAMILY SSF52540 210 461 1.34E-47 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_09730 2e50391e5275702c3e493fb360619f9c 481 Gene3D G3DSA:1.10.860.10 24 189 2.0E-42 T 13-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CDG55_09730 2e50391e5275702c3e493fb360619f9c 481 SUPERFAMILY SSF48024 29 141 8.89E-30 T 13-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 CDG55_09730 2e50391e5275702c3e493fb360619f9c 481 Pfam PF03796 DnaB-like helicase C terminal domain 212 468 4.3E-108 T 13-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 CDG55_09730 2e50391e5275702c3e493fb360619f9c 481 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 31 470 2.1E-163 T 13-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 CDG55_08450 0e19a813eedd2e8dc329180ab82d4304 301 SUPERFAMILY SSF53474 3 299 1.12E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_08450 0e19a813eedd2e8dc329180ab82d4304 301 Pfam PF12697 Alpha/beta hydrolase family 23 291 7.2E-14 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_08450 0e19a813eedd2e8dc329180ab82d4304 301 Gene3D G3DSA:3.40.50.1820 2 300 1.1E-37 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_06090 ce42120dee588fb9e95f7e2e38dd1905 146 Pfam PF10881 Protein of unknown function (DUF2726) 37 145 5.8E-16 T 13-10-2018 IPR024402 Domain of unknown function DUF2726 CDG55_06090 ce42120dee588fb9e95f7e2e38dd1905 146 Gene3D G3DSA:3.40.960.10 40 144 6.5E-8 T 13-10-2018 CDG55_02550 120b43b45f51082e8c649898dce64608 573 Gene3D G3DSA:3.40.50.300 350 573 8.4E-72 T 13-10-2018 CDG55_02550 120b43b45f51082e8c649898dce64608 573 Pfam PF00005 ABC transporter 377 529 5.7E-32 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_02550 120b43b45f51082e8c649898dce64608 573 SUPERFAMILY SSF52540 348 571 1.96E-67 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_02550 120b43b45f51082e8c649898dce64608 573 SUPERFAMILY SSF90123 8 513 1.7E-29 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CDG55_02550 120b43b45f51082e8c649898dce64608 573 Gene3D G3DSA:1.20.1560.10 5 329 2.3E-20 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CDG55_02550 120b43b45f51082e8c649898dce64608 573 SMART SM00382 386 573 8.4E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_02550 120b43b45f51082e8c649898dce64608 573 Pfam PF00664 ABC transporter transmembrane region 42 252 1.1E-13 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CDG55_14505 69b3335a375fd825299ae9d05a71be04 196 Pfam PF13649 Methyltransferase domain 41 129 4.9E-16 T 13-10-2018 CDG55_14505 69b3335a375fd825299ae9d05a71be04 196 SUPERFAMILY SSF53335 6 169 5.58E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_14505 69b3335a375fd825299ae9d05a71be04 196 Gene3D G3DSA:3.40.50.150 1 195 1.9E-52 T 13-10-2018 CDG55_15000 7ea12aff146f006b30474fce7370f941 365 Pfam PF07859 alpha/beta hydrolase fold 132 337 1.6E-62 T 13-10-2018 IPR013094 Alpha/beta hydrolase fold-3 GO:0016787 CDG55_15000 7ea12aff146f006b30474fce7370f941 365 Gene3D G3DSA:3.40.50.1820 58 360 2.9E-72 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_15000 7ea12aff146f006b30474fce7370f941 365 SUPERFAMILY SSF53474 70 352 1.4E-61 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_12015 a9782a4bd7a93b59720a3cac26dd9cf8 345 SUPERFAMILY SSF111337 1 340 1.57E-127 T 13-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CDG55_12015 a9782a4bd7a93b59720a3cac26dd9cf8 345 Gene3D G3DSA:3.40.1780.10 14 340 3.9E-115 T 13-10-2018 CDG55_12015 a9782a4bd7a93b59720a3cac26dd9cf8 345 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 341 44.701 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CDG55_12015 a9782a4bd7a93b59720a3cac26dd9cf8 345 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 340 2.1E-134 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CDG55_12015 a9782a4bd7a93b59720a3cac26dd9cf8 345 Gene3D G3DSA:2.40.10.240 63 159 3.9E-115 T 13-10-2018 CDG55_12015 a9782a4bd7a93b59720a3cac26dd9cf8 345 Pfam PF02547 Queuosine biosynthesis protein 3 340 2.3E-125 T 13-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 CDG55_04760 c9e3e411a8e641b8a35961a97c8bc95b 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 82 179 1.4E-7 T 13-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 CDG55_04760 c9e3e411a8e641b8a35961a97c8bc95b 224 Gene3D G3DSA:1.10.150.240 17 84 3.4E-57 T 13-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CDG55_04760 c9e3e411a8e641b8a35961a97c8bc95b 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 185 1.2E-27 T 13-10-2018 CDG55_04760 c9e3e411a8e641b8a35961a97c8bc95b 224 Gene3D G3DSA:3.40.50.1000 6 204 3.4E-57 T 13-10-2018 IPR023214 HAD superfamily CDG55_04760 c9e3e411a8e641b8a35961a97c8bc95b 224 SUPERFAMILY SSF56784 1 216 3.89E-50 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_08405 f1576b20d5ab35a0bff5bdaad5046ccf 228 Gene3D G3DSA:3.30.2010.10 129 223 1.2E-13 T 13-10-2018 CDG55_08405 f1576b20d5ab35a0bff5bdaad5046ccf 228 Pfam PF01863 Protein of unknown function DUF45 22 220 1.3E-41 T 13-10-2018 IPR002725 Protein of unknown function DUF45 CDG55_12175 a7155127098bcf5199b4ecfb228383e8 139 Pfam PF03259 Roadblock/LC7 domain 27 99 9.5E-6 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain CDG55_12175 a7155127098bcf5199b4ecfb228383e8 139 Gene3D G3DSA:3.30.450.30 23 136 8.6E-16 T 13-10-2018 CDG55_12175 a7155127098bcf5199b4ecfb228383e8 139 SUPERFAMILY SSF103196 25 133 1.03E-13 T 13-10-2018 CDG55_12175 a7155127098bcf5199b4ecfb228383e8 139 SMART SM00960 19 111 0.0098 T 13-10-2018 IPR004942 Roadblock/LAMTOR2 domain CDG55_02680 0daf9304f0a72cc48b492cea1f8daa33 207 Hamap MF_00328 Guanylate kinase [gmk]. 1 184 35.357 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CDG55_02680 0daf9304f0a72cc48b492cea1f8daa33 207 SUPERFAMILY SSF52540 2 185 6.22E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_02680 0daf9304f0a72cc48b492cea1f8daa33 207 Gene3D G3DSA:3.40.50.300 7 180 1.8E-65 T 13-10-2018 CDG55_02680 0daf9304f0a72cc48b492cea1f8daa33 207 SMART SM00072 2 184 5.0E-59 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CDG55_02680 0daf9304f0a72cc48b492cea1f8daa33 207 Gene3D G3DSA:3.30.63.10 34 93 1.8E-65 T 13-10-2018 CDG55_02680 0daf9304f0a72cc48b492cea1f8daa33 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 181 3.1E-73 T 13-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 CDG55_02680 0daf9304f0a72cc48b492cea1f8daa33 207 Pfam PF00625 Guanylate kinase 6 182 2.3E-49 T 13-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CDG55_01415 7952f6932612a0aba5b29a382ee0f1c4 52 Hamap MF_01361 UPF0391 membrane protein YtjA [ytjA]. 1 51 17.134 T 13-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDG55_01415 7952f6932612a0aba5b29a382ee0f1c4 52 Pfam PF07043 Protein of unknown function (DUF1328) 6 44 2.6E-9 T 13-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDG55_01415 7952f6932612a0aba5b29a382ee0f1c4 52 PIRSF PIRSF036466 1 52 5.3E-18 T 13-10-2018 IPR009760 Protein of unknown function DUF1328 GO:0005886 CDG55_06350 1a107c120bd9358f73c246b2b3b4631e 373 Gene3D G3DSA:1.25.40.10 40 158 9.2E-9 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_06350 1a107c120bd9358f73c246b2b3b4631e 373 SUPERFAMILY SSF48452 71 151 1.09E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_06350 1a107c120bd9358f73c246b2b3b4631e 373 Pfam PF14559 Tetratricopeptide repeat 100 154 4.4E-7 T 13-10-2018 CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 PRINTS PR00811 Bacterial general secretion pathway protein D signature 608 626 1.4E-34 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 PRINTS PR00811 Bacterial general secretion pathway protein D signature 631 645 1.4E-34 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 PRINTS PR00811 Bacterial general secretion pathway protein D signature 389 399 1.4E-34 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 PRINTS PR00811 Bacterial general secretion pathway protein D signature 475 499 1.4E-34 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 PRINTS PR00811 Bacterial general secretion pathway protein D signature 510 520 1.4E-34 T 13-10-2018 IPR001775 GspD/PilQ family CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 Pfam PF03958 Bacterial type II/III secretion system short domain 129 185 4.4E-8 T 13-10-2018 IPR005644 NolW-like CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 Pfam PF03958 Bacterial type II/III secretion system short domain 193 261 1.5E-12 T 13-10-2018 IPR005644 NolW-like CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 Pfam PF03958 Bacterial type II/III secretion system short domain 268 389 2.8E-13 T 13-10-2018 IPR005644 NolW-like CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 Gene3D G3DSA:3.30.1370.120 191 258 1.0E-15 T 13-10-2018 IPR038591 NolW-like superfamily CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 Pfam PF00263 Bacterial type II and III secretion system protein 479 643 2.0E-48 T 13-10-2018 IPR004846 Type II/III secretion system GO:0009306 CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 34 653 5.3E-165 T 13-10-2018 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 CDG55_13740 d57e9dfd7a62c266c8a87aebcaf5d27d 750 Gene3D G3DSA:3.30.1370.120 25 186 9.8E-53 T 13-10-2018 IPR038591 NolW-like superfamily CDG55_01705 abbf86ace9fbdabe0de5f8883944effe 615 Gene3D G3DSA:3.40.30.10 487 611 1.6E-23 T 13-10-2018 CDG55_01705 abbf86ace9fbdabe0de5f8883944effe 615 Pfam PF11412 Disulphide bond corrector protein DsbC 37 144 1.9E-26 T 13-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CDG55_01705 abbf86ace9fbdabe0de5f8883944effe 615 SUPERFAMILY SSF74863 36 144 1.44E-26 T 13-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CDG55_01705 abbf86ace9fbdabe0de5f8883944effe 615 Gene3D G3DSA:2.60.40.1250 29 159 8.2E-31 T 13-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CDG55_01705 abbf86ace9fbdabe0de5f8883944effe 615 Pfam PF00085 Thioredoxin 501 608 4.1E-8 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CDG55_01705 abbf86ace9fbdabe0de5f8883944effe 615 SUPERFAMILY SSF52833 496 608 2.63E-19 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_01705 abbf86ace9fbdabe0de5f8883944effe 615 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 224 424 2.3E-17 T 13-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 CDG55_10755 2836a7ac232315725cfc2da14b884420 537 Pfam PF00884 Sulfatase 224 488 1.7E-30 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CDG55_10755 2836a7ac232315725cfc2da14b884420 537 SUPERFAMILY SSF53649 226 510 1.87E-19 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CDG55_10755 2836a7ac232315725cfc2da14b884420 537 Gene3D G3DSA:3.40.720.10 208 529 2.8E-57 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CDG55_12470 d085f05d7d3f96db0b78ebfab59fb33c 276 Gene3D G3DSA:3.20.20.140 1 268 2.0E-68 T 13-10-2018 CDG55_12470 d085f05d7d3f96db0b78ebfab59fb33c 276 SUPERFAMILY SSF51556 3 269 1.59E-67 T 13-10-2018 IPR032466 Metal-dependent hydrolase CDG55_12470 d085f05d7d3f96db0b78ebfab59fb33c 276 PIRSF PIRSF005902 1 272 8.1E-59 T 13-10-2018 IPR001130 TatD family GO:0016788 CDG55_12470 d085f05d7d3f96db0b78ebfab59fb33c 276 Pfam PF01026 TatD related DNase 4 267 3.6E-57 T 13-10-2018 IPR001130 TatD family GO:0016788 CDG55_07450 70e428912d577acbe30e5673930358d9 235 Pfam PF00325 Bacterial regulatory proteins, crp family 176 207 2.4E-14 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDG55_07450 70e428912d577acbe30e5673930358d9 235 SMART SM00100 14 132 2.7E-21 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CDG55_07450 70e428912d577acbe30e5673930358d9 235 SMART SM00419 170 218 4.5E-13 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDG55_07450 70e428912d577acbe30e5673930358d9 235 Gene3D G3DSA:1.10.10.10 149 217 4.5E-32 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07450 70e428912d577acbe30e5673930358d9 235 SUPERFAMILY SSF51206 20 147 8.25E-31 T 13-10-2018 IPR018490 Cyclic nucleotide-binding-like CDG55_07450 70e428912d577acbe30e5673930358d9 235 SUPERFAMILY SSF46785 149 218 8.06E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_07450 70e428912d577acbe30e5673930358d9 235 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 176 192 1.1E-8 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDG55_07450 70e428912d577acbe30e5673930358d9 235 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 192 207 1.1E-8 T 13-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 CDG55_07450 70e428912d577acbe30e5673930358d9 235 Pfam PF00027 Cyclic nucleotide-binding domain 33 120 1.4E-21 T 13-10-2018 IPR000595 Cyclic nucleotide-binding domain CDG55_07450 70e428912d577acbe30e5673930358d9 235 Gene3D G3DSA:2.60.120.10 21 148 7.2E-42 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_14010 5544d5dfb6a43cec1bf478fab3e9f672 132 Gene3D G3DSA:1.20.120.550 5 131 3.2E-19 T 13-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily CDG55_14010 5544d5dfb6a43cec1bf478fab3e9f672 132 Pfam PF01124 MAPEG family 9 129 3.1E-25 T 13-10-2018 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein CDG55_14010 5544d5dfb6a43cec1bf478fab3e9f672 132 SUPERFAMILY SSF161084 8 129 4.05E-28 T 13-10-2018 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily CDG55_01305 661cddc6ac5b39ffc85754e07ae4e166 47 Pfam PF16951 Putative methionine and alanine importer, small subunit 1 34 2.9E-10 T 13-10-2018 IPR031596 Putative methionine and alanine importer, small subunit CDG55_13385 62ef5b6d6894976793a4f49e81605dbc 109 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 3.3E-35 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDG55_13385 62ef5b6d6894976793a4f49e81605dbc 109 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 3.3E-35 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDG55_13385 62ef5b6d6894976793a4f49e81605dbc 109 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 3.3E-35 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDG55_13385 62ef5b6d6894976793a4f49e81605dbc 109 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 3.3E-35 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDG55_13385 62ef5b6d6894976793a4f49e81605dbc 109 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 2 73 6.1E-25 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDG55_13385 62ef5b6d6894976793a4f49e81605dbc 109 Pfam PF03840 Preprotein translocase SecG subunit 4 72 2.0E-20 T 13-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 SUPERFAMILY SSF50249 3 123 8.57E-51 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 Gene3D G3DSA:2.40.50.140 1 124 4.6E-62 T 13-10-2018 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 2.1E-68 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 5.2E-42 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 PIRSF PIRSF002133 1 124 9.4E-53 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.281 T 13-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 3.8E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 3.8E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 3.8E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 3.8E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 3.8E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_05020 5532e74b9d0544f1d5b0543e5a89932b 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 3.8E-59 T 13-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_04300 d61db29ebda874cac3629a9b25a192cd 238 Gene3D G3DSA:3.40.50.2300 1 129 3.9E-37 T 13-10-2018 CDG55_04300 d61db29ebda874cac3629a9b25a192cd 238 SUPERFAMILY SSF52172 8 130 3.42E-38 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_04300 d61db29ebda874cac3629a9b25a192cd 238 SMART SM00862 155 231 2.8E-25 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_04300 d61db29ebda874cac3629a9b25a192cd 238 SUPERFAMILY SSF46894 135 232 5.1E-28 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_04300 d61db29ebda874cac3629a9b25a192cd 238 Gene3D G3DSA:1.10.10.10 130 238 7.6E-41 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04300 d61db29ebda874cac3629a9b25a192cd 238 Pfam PF00072 Response regulator receiver domain 10 119 1.1E-24 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_04300 d61db29ebda874cac3629a9b25a192cd 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 231 1.3E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_04300 d61db29ebda874cac3629a9b25a192cd 238 SMART SM00448 8 118 6.1E-40 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_10810 8a65c46b6774a1e9ac7afecccae376f6 202 Gene3D G3DSA:1.20.120.20 2 141 2.9E-12 T 13-10-2018 CDG55_10810 8a65c46b6774a1e9ac7afecccae376f6 202 SUPERFAMILY SSF58113 4 159 8.5E-9 T 13-10-2018 CDG55_00460 e3fa9a5548e7f066c401108e106594cf 104 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 41 96 3.1E-21 T 13-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system CDG55_01725 b28208dfd41b413e29b446c8f0ba0a12 145 Gene3D G3DSA:2.40.128.520 23 145 4.6E-17 T 13-10-2018 CDG55_01725 b28208dfd41b413e29b446c8f0ba0a12 145 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 27 143 1.9E-26 T 13-10-2018 IPR019223 Domain of unknown function DUF2147 CDG55_12505 16a689280fb81222b0dddf8437a007e5 583 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 317 339 7.9E-14 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CDG55_12505 16a689280fb81222b0dddf8437a007e5 583 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 340 354 7.9E-14 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CDG55_12505 16a689280fb81222b0dddf8437a007e5 583 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 116 135 7.9E-14 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CDG55_12505 16a689280fb81222b0dddf8437a007e5 583 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 61 73 7.9E-14 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CDG55_12505 16a689280fb81222b0dddf8437a007e5 583 SUPERFAMILY SSF53335 36 396 1.11E-63 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_12505 16a689280fb81222b0dddf8437a007e5 583 Pfam PF01555 DNA methylase 61 378 6.1E-40 T 13-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 CDG55_12505 16a689280fb81222b0dddf8437a007e5 583 PIRSF PIRSF015855 3 446 3.3E-116 T 13-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 CDG55_00515 e0c03324120b6591c3a3ea8b17d0c964 234 Gene3D G3DSA:3.30.420.10 67 210 3.0E-5 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_00515 e0c03324120b6591c3a3ea8b17d0c964 234 Pfam PF13610 DDE domain 74 212 9.8E-50 T 13-10-2018 IPR032874 DDE domain CDG55_00515 e0c03324120b6591c3a3ea8b17d0c964 234 SUPERFAMILY SSF53098 72 191 1.54E-8 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 SMART SM00729 43 250 1.3E-41 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 SUPERFAMILY SSF102114 5 310 4.19E-92 T 13-10-2018 CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 SMART SM00876 220 312 1.4E-41 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 5.1E-18 T 13-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 Hamap MF_01694 Biotin synthase [bioB]. 5 313 42.607 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 PIRSF PIRSF001619 1 318 4.4E-139 T 13-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 TIGRFAM TIGR00433 bioB: biotin synthase 14 310 2.7E-123 T 13-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 Gene3D G3DSA:3.20.20.70 4 314 1.3E-129 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_07345 14a4e88cd5021952f481f210980ac4e3 329 Pfam PF04055 Radical SAM superfamily 50 207 1.2E-15 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_14525 1ebc0fc8a49a306c48b5554e8b997739 87 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 74 3.6E-16 T 13-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM CDG55_14525 1ebc0fc8a49a306c48b5554e8b997739 87 Gene3D G3DSA:1.10.1220.170 41 86 1.7E-13 T 13-10-2018 CDG55_14525 1ebc0fc8a49a306c48b5554e8b997739 87 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 55 3.2E-10 T 13-10-2018 CDG55_14525 1ebc0fc8a49a306c48b5554e8b997739 87 SUPERFAMILY SSF143120 1 81 2.27E-24 T 13-10-2018 IPR036165 YefM-like superfamily CDG55_14525 1ebc0fc8a49a306c48b5554e8b997739 87 Gene3D G3DSA:3.40.1620.10 1 40 1.5E-10 T 13-10-2018 CDG55_02590 c1b741c00d99838769c4206bf66a23da 360 Pfam PF04443 Acyl-protein synthetase, LuxE 12 357 1.2E-50 T 13-10-2018 IPR007534 Acyl-protein synthetase, LuxE GO:0008218|GO:0047474 MetaCyc: PWY-7723 CDG55_02590 c1b741c00d99838769c4206bf66a23da 360 Gene3D G3DSA:3.40.50.12780 16 346 6.6E-14 T 13-10-2018 CDG55_02590 c1b741c00d99838769c4206bf66a23da 360 SUPERFAMILY SSF56801 77 345 1.7E-6 T 13-10-2018 CDG55_12325 f62a38885e82ce1697cca574dd35362b 663 Pfam PF01464 Transglycosylase SLT domain 504 607 1.3E-20 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CDG55_12325 f62a38885e82ce1697cca574dd35362b 663 SUPERFAMILY SSF53955 497 655 1.73E-39 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_12325 f62a38885e82ce1697cca574dd35362b 663 Gene3D G3DSA:1.10.530.10 491 650 2.7E-38 T 13-10-2018 CDG55_12325 f62a38885e82ce1697cca574dd35362b 663 Gene3D G3DSA:1.25.20.10 41 399 3.3E-54 T 13-10-2018 CDG55_12325 f62a38885e82ce1697cca574dd35362b 663 SUPERFAMILY SSF48435 42 493 1.31E-82 T 13-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 CDG55_07665 b9558f5f3f6bd26bdfbd5412a3aacac9 454 Pfam PF01136 Peptidase family U32 75 338 3.9E-95 T 13-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 CDG55_07665 b9558f5f3f6bd26bdfbd5412a3aacac9 454 Gene3D G3DSA:2.40.30.10 352 436 4.3E-10 T 13-10-2018 CDG55_07665 b9558f5f3f6bd26bdfbd5412a3aacac9 454 Pfam PF16325 Peptidase family U32 C-terminal domain 356 435 1.9E-20 T 13-10-2018 IPR032525 Peptidase family U32, C-terminal CDG55_11865 23ae04b6469cc7ca756541b4fb34760c 469 SUPERFAMILY SSF56024 284 433 1.53E-19 T 13-10-2018 CDG55_11865 23ae04b6469cc7ca756541b4fb34760c 469 Pfam PF13091 PLD-like domain 293 432 1.6E-21 T 13-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 CDG55_11865 23ae04b6469cc7ca756541b4fb34760c 469 Gene3D G3DSA:3.30.870.10 281 439 1.3E-26 T 13-10-2018 CDG55_11865 23ae04b6469cc7ca756541b4fb34760c 469 SUPERFAMILY SSF56024 58 252 1.38E-14 T 13-10-2018 CDG55_03630 8a4f68b0a60d4257ef17a23268ea73ec 203 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 202 14.427 T 13-10-2018 IPR006008 Intracellular septation protein A GO:0016021 CDG55_03630 8a4f68b0a60d4257ef17a23268ea73ec 203 Pfam PF04279 Intracellular septation protein A 1 201 6.4E-40 T 13-10-2018 IPR006008 Intracellular septation protein A GO:0016021 CDG55_13140 1418c1efb7ad304a8c40dbc790d1de66 288 Hamap MF_00697 UPF0276 protein . 7 274 44.817 T 13-10-2018 IPR007801 Uncharacterised protein family UPF0276 CDG55_13140 1418c1efb7ad304a8c40dbc790d1de66 288 Pfam PF05114 Protein of unknown function (DUF692) 7 266 3.1E-103 T 13-10-2018 IPR007801 Uncharacterised protein family UPF0276 CDG55_13140 1418c1efb7ad304a8c40dbc790d1de66 288 SUPERFAMILY SSF51658 26 205 8.17E-12 T 13-10-2018 IPR036237 Xylose isomerase-like superfamily CDG55_13140 1418c1efb7ad304a8c40dbc790d1de66 288 Gene3D G3DSA:3.20.20.150 3 280 6.3E-88 T 13-10-2018 CDG55_09700 581ac16b4e32a6a5e7045273eece4f61 292 Gene3D G3DSA:1.10.357.140 13 164 5.4E-20 T 13-10-2018 CDG55_09700 581ac16b4e32a6a5e7045273eece4f61 292 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 3 277 1.7E-81 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 CDG55_09700 581ac16b4e32a6a5e7045273eece4f61 292 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 1 283 17.057 T 13-10-2018 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 Reactome: R-HSA-189451 CDG55_09700 581ac16b4e32a6a5e7045273eece4f61 292 Pfam PF01040 UbiA prenyltransferase family 18 267 3.1E-58 T 13-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 CDG55_00795 9107997c16b959270c0697726055fb01 441 SUPERFAMILY SSF46689 8 110 8.6E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_00795 9107997c16b959270c0697726055fb01 441 SUPERFAMILY SSF53098 129 286 1.24E-17 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_00795 9107997c16b959270c0697726055fb01 441 Pfam PF13384 Homeodomain-like domain 3 51 8.3E-10 T 13-10-2018 CDG55_00795 9107997c16b959270c0697726055fb01 441 Gene3D G3DSA:3.30.420.10 125 318 4.1E-15 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_08950 1c0488d84a0cd0f20888d38b52314b96 242 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 1.1E-93 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CDG55_08950 1c0488d84a0cd0f20888d38b52314b96 242 SUPERFAMILY SSF53633 7 241 2.36E-63 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_08950 1c0488d84a0cd0f20888d38b52314b96 242 Pfam PF00696 Amino acid kinase family 11 220 4.4E-24 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CDG55_08950 1c0488d84a0cd0f20888d38b52314b96 242 PIRSF PIRSF005650 4 242 2.4E-84 T 13-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 CDG55_08950 1c0488d84a0cd0f20888d38b52314b96 242 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 241 41.357 T 13-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 CDG55_08950 1c0488d84a0cd0f20888d38b52314b96 242 Gene3D G3DSA:3.40.1160.10 2 242 1.7E-66 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_10115 6ca113829b4e459502c238d80ec94d30 202 Pfam PF02223 Thymidylate kinase 5 192 2.5E-52 T 13-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 CDG55_10115 6ca113829b4e459502c238d80ec94d30 202 Gene3D G3DSA:3.40.50.300 1 202 8.1E-65 T 13-10-2018 CDG55_10115 6ca113829b4e459502c238d80ec94d30 202 Hamap MF_00165 Thymidylate kinase [tmk]. 1 202 29.699 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CDG55_10115 6ca113829b4e459502c238d80ec94d30 202 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 192 1.0E-53 T 13-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 CDG55_10115 6ca113829b4e459502c238d80ec94d30 202 SUPERFAMILY SSF52540 1 200 1.49E-54 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04275 88d125cb9fc704f1bc15ab56ac87514b 427 Pfam PF00268 Ribonucleotide reductase, small chain 108 395 3.3E-86 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04275 88d125cb9fc704f1bc15ab56ac87514b 427 PIRSF PIRSF000355 78 427 2.6E-139 T 13-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 CDG55_04275 88d125cb9fc704f1bc15ab56ac87514b 427 Gene3D G3DSA:1.10.620.20 85 421 1.3E-110 T 13-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 CDG55_04275 88d125cb9fc704f1bc15ab56ac87514b 427 SUPERFAMILY SSF47240 71 401 6.84E-98 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_08595 0de56e113ca0e996e2cf8229817d407d 232 Pfam PF08856 Protein of unknown function (DUF1826) 25 153 2.9E-5 T 13-10-2018 IPR014955 Protein of unknown function DUF1826 CDG55_14245 1882eea19fb1484533b5692e009d07c1 181 SUPERFAMILY SSF52833 3 179 8.14E-55 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_14245 1882eea19fb1484533b5692e009d07c1 181 PRINTS PR01011 Glutathione peroxidase family signature 141 150 1.4E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_14245 1882eea19fb1484533b5692e009d07c1 181 PRINTS PR01011 Glutathione peroxidase family signature 23 40 1.4E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_14245 1882eea19fb1484533b5692e009d07c1 181 PRINTS PR01011 Glutathione peroxidase family signature 58 74 1.4E-18 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_14245 1882eea19fb1484533b5692e009d07c1 181 Pfam PF00255 Glutathione peroxidase 5 111 4.5E-40 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_14245 1882eea19fb1484533b5692e009d07c1 181 PIRSF PIRSF000303 1 181 1.8E-61 T 13-10-2018 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 Reactome: R-HSA-3299685 CDG55_14245 1882eea19fb1484533b5692e009d07c1 181 Gene3D G3DSA:3.40.30.10 1 181 1.5E-61 T 13-10-2018 CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 SUPERFAMILY SSF88697 240 296 2.39E-6 T 13-10-2018 IPR015947 PUA-like superfamily CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 180 234 1.2E-13 T 13-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 241 295 2.3E-10 T 13-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 Gene3D G3DSA:3.30.2350.10 1 239 2.3E-93 T 13-10-2018 CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 SUPERFAMILY SSF55120 8 235 8.06E-83 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 31 179 2.1E-62 T 13-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 Gene3D G3DSA:2.30.130.10 240 296 3.3E-5 T 13-10-2018 IPR036974 PUA domain superfamily GO:0003723 CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 10 217 5.7E-82 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_02755 21c6c76e8dd6efff642ed07bd6050e17 297 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 9 295 19.536 T 13-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_14945 41f551aae0aac46d4e412ccfcf0618ff 179 Pfam PF01252 Signal peptidase (SPase) II 24 165 1.1E-37 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CDG55_14945 41f551aae0aac46d4e412ccfcf0618ff 179 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 109 124 3.6E-19 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CDG55_14945 41f551aae0aac46d4e412ccfcf0618ff 179 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 145 161 3.6E-19 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CDG55_14945 41f551aae0aac46d4e412ccfcf0618ff 179 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 61 69 3.6E-19 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CDG55_14945 41f551aae0aac46d4e412ccfcf0618ff 179 TIGRFAM TIGR00077 lspA: signal peptidase II 17 172 6.6E-41 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CDG55_14945 41f551aae0aac46d4e412ccfcf0618ff 179 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 15 170 17.398 T 13-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 SMART SM00116 276 324 8.0E-8 T 13-10-2018 IPR000644 CBS domain CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 SMART SM00116 210 258 0.16 T 13-10-2018 IPR000644 CBS domain CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 Gene3D G3DSA:3.40.50.10490 4 196 2.6E-59 T 13-10-2018 CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 SUPERFAMILY SSF53697 8 322 9.34E-68 T 13-10-2018 CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 Gene3D G3DSA:3.10.580.10 197 322 2.7E-45 T 13-10-2018 CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 Pfam PF01380 SIS domain 41 172 8.7E-27 T 13-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 314 4.8E-105 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 PIRSF PIRSF004692 1 325 3.8E-134 T 13-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 Pfam PF00571 CBS domain 201 257 2.2E-6 T 13-10-2018 IPR000644 CBS domain CDG55_06280 a585f674ca844e2943e8372a542f60ae 325 Pfam PF00571 CBS domain 269 322 4.8E-12 T 13-10-2018 IPR000644 CBS domain CDG55_02805 da7835a290e51c2451c93b760c979b39 104 SUPERFAMILY SSF54909 4 100 1.2E-26 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_02805 da7835a290e51c2451c93b760c979b39 104 Gene3D G3DSA:3.30.70.100 1 104 7.3E-29 T 13-10-2018 CDG55_02805 da7835a290e51c2451c93b760c979b39 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 86 7.8E-19 T 13-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain CDG55_10545 abbcaa5d79cf402f5cf3bcfe3e2e4bf3 582 Pfam PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal 2 530 6.1E-96 T 13-10-2018 IPR031329 Neutral/alkaline non-lysosomal ceramidase, N-terminal KEGG: 00600+3.5.1.23|MetaCyc: PWY-6483|MetaCyc: PWY-7119|Reactome: R-HSA-1660662 CDG55_10835 9ba44d0e0eee5f484c1902cab128d604 207 Gene3D G3DSA:2.160.10.10 6 206 4.3E-55 T 13-10-2018 CDG55_10835 9ba44d0e0eee5f484c1902cab128d604 207 SUPERFAMILY SSF51161 64 202 1.16E-36 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_10835 9ba44d0e0eee5f484c1902cab128d604 207 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 108 142 5.1E-9 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_04135 bc46b96ca749879cd460fa6675196913 182 SUPERFAMILY SSF55811 3 163 2.03E-36 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_04135 bc46b96ca749879cd460fa6675196913 182 Pfam PF00293 NUDIX domain 43 143 3.4E-10 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_04135 bc46b96ca749879cd460fa6675196913 182 Gene3D G3DSA:2.20.70.10 1 35 2.9E-12 T 13-10-2018 CDG55_04135 bc46b96ca749879cd460fa6675196913 182 Pfam PF14803 Nudix N-terminal 3 35 1.1E-14 T 13-10-2018 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.13|KEGG: 00740+3.6.1.18 CDG55_04135 bc46b96ca749879cd460fa6675196913 182 Gene3D G3DSA:3.90.79.10 36 177 3.3E-37 T 13-10-2018 CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 Gene3D G3DSA:3.30.70.920 53 146 1.3E-17 T 13-10-2018 CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 SUPERFAMILY SSF54909 61 150 1.47E-17 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 2.4E-21 T 13-10-2018 CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 Gene3D G3DSA:1.10.10.10 1 52 6.1E-25 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 Pfam PF01037 Lrp/AsnC ligand binding domain 67 140 6.2E-18 T 13-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 SMART SM00344 1 110 7.8E-46 T 13-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 SUPERFAMILY SSF46785 1 61 1.1E-18 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.8E-18 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.8E-18 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_09450 907bd8147978a7d67b1c643b4cf142d0 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.8E-18 T 13-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 CDG55_07035 1edc7f1c55cf61360289c6c39dbd5ed8 405 Gene3D G3DSA:3.90.1150.10 5 377 7.0E-156 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_07035 1edc7f1c55cf61360289c6c39dbd5ed8 405 SUPERFAMILY SSF53383 3 392 1.48E-106 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_07035 1edc7f1c55cf61360289c6c39dbd5ed8 405 Gene3D G3DSA:3.40.640.10 16 263 7.0E-156 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_07035 1edc7f1c55cf61360289c6c39dbd5ed8 405 Pfam PF00266 Aminotransferase class-V 5 369 1.2E-80 T 13-10-2018 IPR000192 Aminotransferase class V domain CDG55_07035 1edc7f1c55cf61360289c6c39dbd5ed8 405 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 396 52.809 T 13-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 CDG55_07035 1edc7f1c55cf61360289c6c39dbd5ed8 405 PIRSF PIRSF005572 2 385 1.7E-127 T 13-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 CDG55_07035 1edc7f1c55cf61360289c6c39dbd5ed8 405 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 405 1.1E-205 T 13-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 Hamap MF_00268 Protein RecA [recA]. 5 329 51.62 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 SUPERFAMILY SSF54752 269 325 7.06E-20 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 Gene3D G3DSA:3.30.250.10 269 327 2.0E-24 T 13-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 PRINTS PR00142 RecA protein signature 93 122 9.6E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 PRINTS PR00142 RecA protein signature 210 238 9.6E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 PRINTS PR00142 RecA protein signature 165 194 9.6E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 PRINTS PR00142 RecA protein signature 297 314 9.6E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 PRINTS PR00142 RecA protein signature 243 272 9.6E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 PRINTS PR00142 RecA protein signature 127 156 9.6E-82 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 SMART SM00382 57 228 3.9E-11 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 SUPERFAMILY SSF52540 3 266 2.24E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 Gene3D G3DSA:3.40.50.300 26 267 1.1E-85 T 13-10-2018 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 Pfam PF00154 recA bacterial DNA recombination protein 7 267 1.6E-148 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_07080 f67591bed4d8fc8f8640402ab00cbe9e 348 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 1.3E-171 T 13-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 CDG55_02520 db1214edf91c4a41d26cadd2ad8bd4e9 196 Gene3D G3DSA:1.20.1440.20 18 195 6.6E-65 T 13-10-2018 IPR023353 LemA-like domain superfamily CDG55_02520 db1214edf91c4a41d26cadd2ad8bd4e9 196 Pfam PF04011 LemA family 13 195 9.9E-68 T 13-10-2018 IPR007156 LemA CDG55_02520 db1214edf91c4a41d26cadd2ad8bd4e9 196 SUPERFAMILY SSF140478 27 184 1.57E-53 T 13-10-2018 IPR023353 LemA-like domain superfamily CDG55_03990 ed79e0c4b468c2c0824b468494c47fb9 496 Gene3D G3DSA:3.40.50.300 218 495 6.8E-116 T 13-10-2018 CDG55_03990 ed79e0c4b468c2c0824b468494c47fb9 496 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 8 490 4.9E-209 T 13-10-2018 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 CDG55_03990 ed79e0c4b468c2c0824b468494c47fb9 496 Gene3D G3DSA:3.30.300.160 3 84 2.8E-6 T 13-10-2018 CDG55_03990 ed79e0c4b468c2c0824b468494c47fb9 496 Gene3D G3DSA:3.30.450.90 85 217 2.2E-51 T 13-10-2018 CDG55_03990 ed79e0c4b468c2c0824b468494c47fb9 496 Pfam PF00437 Type II/IV secretion system protein 119 384 2.9E-88 T 13-10-2018 IPR001482 Type II/IV secretion system protein CDG55_03990 ed79e0c4b468c2c0824b468494c47fb9 496 SMART SM00382 245 368 2.1E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_03990 ed79e0c4b468c2c0824b468494c47fb9 496 SUPERFAMILY SSF52540 102 490 1.6E-102 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03990 ed79e0c4b468c2c0824b468494c47fb9 496 SUPERFAMILY SSF160246 7 70 4.05E-14 T 13-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily CDG55_02300 409ff1d1563c5a24fc5d9a0b5d3a4ca3 254 SMART SM00448 21 132 2.2E-43 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_02300 409ff1d1563c5a24fc5d9a0b5d3a4ca3 254 Gene3D G3DSA:3.40.50.2300 8 141 1.3E-40 T 13-10-2018 CDG55_02300 409ff1d1563c5a24fc5d9a0b5d3a4ca3 254 Pfam PF00486 Transcriptional regulatory protein, C terminal 172 248 7.8E-22 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_02300 409ff1d1563c5a24fc5d9a0b5d3a4ca3 254 SUPERFAMILY SSF46894 154 250 5.67E-27 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_02300 409ff1d1563c5a24fc5d9a0b5d3a4ca3 254 SUPERFAMILY SSF52172 22 143 6.26E-42 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_02300 409ff1d1563c5a24fc5d9a0b5d3a4ca3 254 Pfam PF00072 Response regulator receiver domain 23 133 1.7E-29 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_02300 409ff1d1563c5a24fc5d9a0b5d3a4ca3 254 Gene3D G3DSA:1.10.10.10 146 254 1.6E-37 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_02300 409ff1d1563c5a24fc5d9a0b5d3a4ca3 254 SMART SM00862 172 248 3.7E-23 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_12960 b4a27f61bb66721401f94092a8bb24c6 350 PIRSF PIRSF038896 2 348 1.9E-90 T 13-10-2018 IPR024884 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D GO:0008270|GO:0070290 Reactome: R-HSA-2466712 CDG55_12960 b4a27f61bb66721401f94092a8bb24c6 350 Pfam PF12706 Beta-lactamase superfamily domain 113 308 9.4E-37 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_12960 b4a27f61bb66721401f94092a8bb24c6 350 Gene3D G3DSA:3.60.15.10 62 349 3.0E-70 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_12960 b4a27f61bb66721401f94092a8bb24c6 350 SUPERFAMILY SSF56281 93 314 1.97E-28 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_08830 fc2ed0052f53be9e52f71c12c71a393c 212 Pfam PF13523 Acetyltransferase (GNAT) domain 29 169 7.0E-36 T 13-10-2018 CDG55_08830 fc2ed0052f53be9e52f71c12c71a393c 212 SMART SM01006 24 71 2.5E-12 T 13-10-2018 IPR019432 Siderophore biosynthesis protein, conserved domain CDG55_08830 fc2ed0052f53be9e52f71c12c71a393c 212 Gene3D G3DSA:3.40.630.30 5 187 2.2E-41 T 13-10-2018 CDG55_08830 fc2ed0052f53be9e52f71c12c71a393c 212 SUPERFAMILY SSF55729 19 184 1.33E-39 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_02715 23b7a550b83b9251b26968679347756f 186 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 27 5.4E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02715 23b7a550b83b9251b26968679347756f 186 SUPERFAMILY SSF54523 8 106 1.49E-16 T 13-10-2018 CDG55_02715 23b7a550b83b9251b26968679347756f 186 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 6 28 9.7E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02715 23b7a550b83b9251b26968679347756f 186 Gene3D G3DSA:3.30.700.10 8 145 1.5E-18 T 13-10-2018 CDG55_02715 23b7a550b83b9251b26968679347756f 186 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 29 123 1.8E-9 T 13-10-2018 IPR031982 Type IV minor pilin ComP CDG55_02715 23b7a550b83b9251b26968679347756f 186 PRINTS PR00813 Bacterial general secretion pathway protein G signature 43 61 5.4E-9 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 CDG55_02715 23b7a550b83b9251b26968679347756f 186 PRINTS PR00813 Bacterial general secretion pathway protein G signature 7 32 5.4E-9 T 13-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 CDG55_08635 327e46d36468fbf8913b5332a40236d8 336 PIRSF PIRSF037167 5 332 1.9E-135 T 13-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 CDG55_08635 327e46d36468fbf8913b5332a40236d8 336 Pfam PF05175 Methyltransferase small domain 146 255 2.7E-17 T 13-10-2018 IPR007848 Methyltransferase small domain GO:0008168 CDG55_08635 327e46d36468fbf8913b5332a40236d8 336 SUPERFAMILY SSF53335 21 318 1.13E-45 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_08635 327e46d36468fbf8913b5332a40236d8 336 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 11 325 49.225 T 13-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 CDG55_08635 327e46d36468fbf8913b5332a40236d8 336 Gene3D G3DSA:3.40.50.150 109 307 3.4E-49 T 13-10-2018 CDG55_08635 327e46d36468fbf8913b5332a40236d8 336 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 20 328 1.4E-76 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 CDG55_08635 327e46d36468fbf8913b5332a40236d8 336 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 18 319 1.3E-110 T 13-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 CDG55_09675 db78e045f7e530120e4bc2af5a7c5a7d 253 Pfam PF06271 RDD family 88 247 1.8E-23 T 13-10-2018 IPR010432 RDD CDG55_09675 db78e045f7e530120e4bc2af5a7c5a7d 253 Pfam PF14237 Domain of unknown function (DUF4339) 4 46 4.7E-16 T 13-10-2018 IPR025640 Domain of unknown function DUF4339 Reactome: R-HSA-6798695 CDG55_01710 537f75f61881279c9cf20e639537a159 231 SUPERFAMILY SSF52833 3 90 3.16E-21 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_01710 537f75f61881279c9cf20e639537a159 231 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 84 2.5E-15 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_01710 537f75f61881279c9cf20e639537a159 231 Gene3D G3DSA:3.40.30.10 6 205 1.0E-57 T 13-10-2018 CDG55_01710 537f75f61881279c9cf20e639537a159 231 Gene3D G3DSA:1.20.1050.10 89 200 1.0E-57 T 13-10-2018 CDG55_01710 537f75f61881279c9cf20e639537a159 231 SUPERFAMILY SSF47616 86 207 1.04E-14 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CDG55_09095 6c858986970f3bff82d84396a742ba43 336 SUPERFAMILY SSF53850 8 262 9.1E-17 T 13-10-2018 CDG55_09095 6c858986970f3bff82d84396a742ba43 336 Gene3D G3DSA:3.40.190.10 95 210 7.9E-79 T 13-10-2018 CDG55_09095 6c858986970f3bff82d84396a742ba43 336 Pfam PF13379 NMT1-like family 5 243 4.6E-56 T 13-10-2018 CDG55_09095 6c858986970f3bff82d84396a742ba43 336 Gene3D G3DSA:3.40.190.10 11 334 7.9E-79 T 13-10-2018 CDG55_13920 29f9b42fe4d79cbef6ead4d75f724154 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 11 354 1.0E-66 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 CDG55_13920 29f9b42fe4d79cbef6ead4d75f724154 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 7 354 4.8E-103 T 13-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 CDG55_00965 b250e512bd5675ec6710290a7b745835 334 SUPERFAMILY SSF160240 238 311 8.63E-5 T 13-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 CDG55_00965 b250e512bd5675ec6710290a7b745835 334 SUPERFAMILY SSF161111 38 234 1.57E-57 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_00965 b250e512bd5675ec6710290a7b745835 334 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 38 311 9.4E-86 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDG55_00965 b250e512bd5675ec6710290a7b745835 334 Pfam PF01545 Cation efflux family 43 233 5.3E-48 T 13-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 CDG55_00965 b250e512bd5675ec6710290a7b745835 334 Gene3D G3DSA:1.20.1510.10 38 233 5.9E-45 T 13-10-2018 IPR027469 Cation efflux transmembrane domain superfamily CDG55_10860 7b0b0f886c7b90e333db1b2a52f66096 214 Pfam PF07290 Protein of unknown function (DUF1449) 11 213 8.7E-56 T 13-10-2018 IPR010840 Protein of unknown function DUF1449 CDG55_04350 0bbebdb6e351d4213b0b429aaf15ba38 338 Pfam PF00146 NADH dehydrogenase 24 329 6.2E-121 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04350 0bbebdb6e351d4213b0b429aaf15ba38 338 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 17 336 24.199 T 13-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_06180 bb75a664ffb2101ad50eec1fa4db83f6 224 Gene3D G3DSA:1.20.1440.100 25 96 1.6E-35 T 13-10-2018 CDG55_06180 bb75a664ffb2101ad50eec1fa4db83f6 224 Pfam PF12710 haloacid dehalogenase-like hydrolase 14 192 1.7E-29 T 13-10-2018 CDG55_06180 bb75a664ffb2101ad50eec1fa4db83f6 224 Gene3D G3DSA:3.40.50.1000 13 208 1.6E-35 T 13-10-2018 IPR023214 HAD superfamily CDG55_06180 bb75a664ffb2101ad50eec1fa4db83f6 224 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 13 203 1.9E-32 T 13-10-2018 IPR006385 HAD-superfamily hydrolase, subfamily IB, SerB1-like CDG55_06180 bb75a664ffb2101ad50eec1fa4db83f6 224 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 13 195 1.3E-24 T 13-10-2018 CDG55_06180 bb75a664ffb2101ad50eec1fa4db83f6 224 SUPERFAMILY SSF56784 10 205 2.44E-23 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 Gene3D G3DSA:3.30.300.20 216 340 4.2E-41 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 SUPERFAMILY SSF52540 41 234 7.92E-48 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 SUPERFAMILY SSF54814 213 339 5.69E-38 T 13-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 Pfam PF07650 KH domain 271 326 1.2E-14 T 13-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 Hamap MF_00367 GTPase Era [era]. 36 338 36.484 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 39 201 3.0E-33 T 13-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 109 127 3.9E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 41 61 3.9E-6 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 TIGRFAM TIGR00436 era: GTP-binding protein Era 39 321 1.1E-96 T 13-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 Gene3D G3DSA:3.40.50.300 35 213 1.0E-51 T 13-10-2018 CDG55_10075 319b4e2c6dd16ad1d9ccdacabdfc474e 341 Pfam PF01926 50S ribosome-binding GTPase 41 155 4.0E-26 T 13-10-2018 IPR006073 GTP binding domain GO:0005525 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 176 1.0E-51 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 Gene3D G3DSA:1.10.520.20 2 107 5.4E-30 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 PRINTS PR00125 ATP synthase delta subunit signature 151 169 1.3E-24 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.3E-24 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 PRINTS PR00125 ATP synthase delta subunit signature 136 151 1.3E-24 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 PRINTS PR00125 ATP synthase delta subunit signature 86 100 1.3E-24 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 PRINTS PR00125 ATP synthase delta subunit signature 75 86 1.3E-24 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 176 8.2E-43 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 178 18.542 T 13-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_14275 603a0d470f9894aedd30dcff31ed6875 178 SUPERFAMILY SSF47928 3 106 8.89E-25 T 13-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 CDG55_11360 af7a0903753778de6ee7cdc5202d0684 325 SUPERFAMILY SSF52151 50 298 4.36E-54 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CDG55_11360 af7a0903753778de6ee7cdc5202d0684 325 Pfam PF01734 Patatin-like phospholipase 55 212 1.7E-26 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 CDG55_11360 af7a0903753778de6ee7cdc5202d0684 325 Gene3D G3DSA:3.40.1090.10 35 143 1.5E-28 T 13-10-2018 CDG55_11360 af7a0903753778de6ee7cdc5202d0684 325 Gene3D G3DSA:3.40.1090.10 144 278 1.6E-18 T 13-10-2018 CDG55_07100 2dac12d4a0da897295440ac7b8009071 243 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 27 93 4.7E-7 T 13-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 CDG55_07100 2dac12d4a0da897295440ac7b8009071 243 SUPERFAMILY SSF53254 27 213 1.96E-14 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CDG55_07100 2dac12d4a0da897295440ac7b8009071 243 Gene3D G3DSA:3.40.50.1240 26 210 2.0E-11 T 13-10-2018 IPR029033 Histidine phosphatase superfamily CDG55_09555 1c347bd31e52b329b0ae54855a6f1f99 470 Pfam PF00155 Aminotransferase class I and II 145 446 6.0E-34 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDG55_09555 1c347bd31e52b329b0ae54855a6f1f99 470 SUPERFAMILY SSF46785 3 74 1.03E-15 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_09555 1c347bd31e52b329b0ae54855a6f1f99 470 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 6.4E-12 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_09555 1c347bd31e52b329b0ae54855a6f1f99 470 Gene3D G3DSA:3.40.640.10 140 359 9.6E-81 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_09555 1c347bd31e52b329b0ae54855a6f1f99 470 SMART SM00345 7 66 6.4E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_09555 1c347bd31e52b329b0ae54855a6f1f99 470 Gene3D G3DSA:1.10.10.10 1 75 4.3E-17 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_09555 1c347bd31e52b329b0ae54855a6f1f99 470 Gene3D G3DSA:3.90.1150.10 97 459 9.6E-81 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_09555 1c347bd31e52b329b0ae54855a6f1f99 470 SUPERFAMILY SSF53383 91 465 1.08E-84 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_09280 de1e984ecb21da312cb3f55c83da8629 212 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 71 2.0E-13 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_09280 de1e984ecb21da312cb3f55c83da8629 212 Gene3D G3DSA:3.40.30.10 1 82 3.1E-29 T 13-10-2018 CDG55_09280 de1e984ecb21da312cb3f55c83da8629 212 Pfam PF00043 Glutathione S-transferase, C-terminal domain 133 195 5.6E-6 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CDG55_09280 de1e984ecb21da312cb3f55c83da8629 212 SUPERFAMILY SSF52833 1 76 6.28E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_09280 de1e984ecb21da312cb3f55c83da8629 212 Gene3D G3DSA:1.20.1050.10 83 201 3.2E-30 T 13-10-2018 CDG55_09280 de1e984ecb21da312cb3f55c83da8629 212 SUPERFAMILY SSF47616 79 203 3.06E-20 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 191 6.8E-4 T 13-10-2018 CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 3.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 3.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 3.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.2E-24 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 2.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 2.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 2.7E-9 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 Pfam PF00106 short chain dehydrogenase 7 195 1.8E-53 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 SUPERFAMILY SSF51735 1 230 1.22E-64 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09345 9313619ddb01a58a3c9f8d74779de218 246 Gene3D G3DSA:3.40.50.720 1 242 6.1E-66 T 13-10-2018 CDG55_02345 954fbceca9c45cbeef6814a01ef089da 472 Pfam PF02321 Outer membrane efflux protein 84 240 2.0E-10 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CDG55_02345 954fbceca9c45cbeef6814a01ef089da 472 Pfam PF02321 Outer membrane efflux protein 286 428 1.7E-9 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CDG55_02345 954fbceca9c45cbeef6814a01ef089da 472 Gene3D G3DSA:1.20.1600.10 81 439 1.4E-32 T 13-10-2018 CDG55_02345 954fbceca9c45cbeef6814a01ef089da 472 SUPERFAMILY SSF56954 25 434 1.06E-42 T 13-10-2018 CDG55_13075 628d816e810b89240521e57972497bb6 396 Pfam PF03486 HI0933-like protein 4 388 4.4E-87 T 13-10-2018 CDG55_13075 628d816e810b89240521e57972497bb6 396 Gene3D G3DSA:1.10.8.260 266 319 1.5E-63 T 13-10-2018 IPR023166 HI0933-like insert domain superfamily CDG55_13075 628d816e810b89240521e57972497bb6 396 Gene3D G3DSA:3.50.50.60 5 387 1.5E-63 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_13075 628d816e810b89240521e57972497bb6 396 PRINTS PR00419 Adrenodoxin reductase family signature 4 26 1.7E-6 T 13-10-2018 CDG55_13075 628d816e810b89240521e57972497bb6 396 PRINTS PR00419 Adrenodoxin reductase family signature 27 40 1.7E-6 T 13-10-2018 CDG55_13075 628d816e810b89240521e57972497bb6 396 Gene3D G3DSA:2.40.30.10 187 336 1.5E-63 T 13-10-2018 CDG55_13075 628d816e810b89240521e57972497bb6 396 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 5 388 2.9E-83 T 13-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like CDG55_13075 628d816e810b89240521e57972497bb6 396 SUPERFAMILY SSF160996 199 336 2.35E-20 T 13-10-2018 CDG55_13075 628d816e810b89240521e57972497bb6 396 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 26 394 1.1E-169 T 13-10-2018 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 CDG55_13075 628d816e810b89240521e57972497bb6 396 SUPERFAMILY SSF51905 1 390 5.86E-37 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 SUPERFAMILY SSF52440 1 121 2.88E-42 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 Gene3D G3DSA:3.30.1490.20 136 200 2.4E-110 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 Hamap MF_00162 Glutathione synthetase [gshB]. 1 314 161.269 T 13-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 Gene3D G3DSA:3.40.50.20 6 113 2.4E-110 T 13-10-2018 CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 TIGRFAM TIGR01380 glut_syn: glutathione synthase 1 310 5.9E-130 T 13-10-2018 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 SUPERFAMILY SSF56059 122 309 6.03E-56 T 13-10-2018 CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 1 119 2.2E-41 T 13-10-2018 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 123 296 4.1E-76 T 13-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 CDG55_01775 bf0a7d222b86506b1a0a3fe815a45a3c 314 Gene3D G3DSA:3.30.470.20 114 294 2.4E-110 T 13-10-2018 CDG55_12950 1dfc1d6e9136a4729d4ba476377d2412 147 Pfam PF04134 Protein of unknown function, DUF393 16 125 2.1E-25 T 13-10-2018 IPR007263 Protein of unknown function DUF393 CDG55_07920 711cb87396074982ad2f2d4c46c1a967 260 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 36.974 T 13-10-2018 IPR005583 Peroxide stress protein YaaA CDG55_07920 711cb87396074982ad2f2d4c46c1a967 260 Pfam PF03883 Peroxide stress protein YaaA 1 243 5.0E-91 T 13-10-2018 IPR005583 Peroxide stress protein YaaA CDG55_14640 be8c9456d2fcb31d17c24c41e0de1f15 122 Gene3D G3DSA:3.30.70.970 2 122 1.2E-16 T 13-10-2018 IPR036701 RraB-like superfamily CDG55_14640 be8c9456d2fcb31d17c24c41e0de1f15 122 SUPERFAMILY SSF89946 3 120 2.22E-34 T 13-10-2018 IPR036701 RraB-like superfamily CDG55_14640 be8c9456d2fcb31d17c24c41e0de1f15 122 Pfam PF06877 Regulator of ribonuclease activity B 11 112 1.2E-27 T 13-10-2018 IPR009671 Regulator of ribonuclease activity B domain CDG55_07600 1bcb645cf2353d2b1501f9723fd59e85 333 Gene3D G3DSA:1.10.530.10 76 327 2.8E-93 T 13-10-2018 CDG55_07600 1bcb645cf2353d2b1501f9723fd59e85 333 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 40 330 9.7E-93 T 13-10-2018 IPR011757 Lytic transglycosylase MltB CDG55_07600 1bcb645cf2353d2b1501f9723fd59e85 333 SUPERFAMILY SSF53955 30 331 3.0E-80 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_07600 1bcb645cf2353d2b1501f9723fd59e85 333 Gene3D G3DSA:1.10.8.350 44 209 2.8E-93 T 13-10-2018 CDG55_07600 1bcb645cf2353d2b1501f9723fd59e85 333 Pfam PF13406 Transglycosylase SLT domain 39 327 2.2E-85 T 13-10-2018 IPR031304 Transglycosylase SLT domain 2 CDG55_11370 393e74ee321b9b51d109f4f2f83a8b6f 411 Pfam PF03616 Sodium/glutamate symporter 4 379 1.9E-138 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CDG55_11370 393e74ee321b9b51d109f4f2f83a8b6f 411 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 3 409 4.1E-151 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CDG55_11370 393e74ee321b9b51d109f4f2f83a8b6f 411 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 3 410 24.809 T 13-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 CDG55_00905 e6a78254f5e0314ab941f419b6d945e4 321 Gene3D G3DSA:3.30.460.10 23 165 5.6E-8 T 13-10-2018 CDG55_00905 e6a78254f5e0314ab941f419b6d945e4 321 SUPERFAMILY SSF81301 2 169 3.27E-26 T 13-10-2018 CDG55_00905 e6a78254f5e0314ab941f419b6d945e4 321 Gene3D G3DSA:1.10.1410.10 166 316 3.3E-9 T 13-10-2018 CDG55_00905 e6a78254f5e0314ab941f419b6d945e4 321 SUPERFAMILY SSF81631 175 295 1.33E-7 T 13-10-2018 CDG55_03680 94325d7b120ec27833b213f877016da3 138 Gene3D G3DSA:3.40.250.10 37 137 8.1E-22 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_03680 94325d7b120ec27833b213f877016da3 138 SMART SM00450 37 130 8.8E-13 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_03680 94325d7b120ec27833b213f877016da3 138 SUPERFAMILY SSF52821 17 134 8.91E-25 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_03680 94325d7b120ec27833b213f877016da3 138 Pfam PF00581 Rhodanese-like domain 47 126 2.5E-11 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_09060 f2e4c148c32b9c4e7badaaa45a7d84f3 342 SUPERFAMILY SSF102114 14 282 1.83E-67 T 13-10-2018 CDG55_09060 f2e4c148c32b9c4e7badaaa45a7d84f3 342 Pfam PF06463 Molybdenum Cofactor Synthesis C 193 306 4.3E-30 T 13-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09060 f2e4c148c32b9c4e7badaaa45a7d84f3 342 Pfam PF04055 Radical SAM superfamily 26 186 1.5E-26 T 13-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 CDG55_09060 f2e4c148c32b9c4e7badaaa45a7d84f3 342 SMART SM00729 22 225 3.8E-8 T 13-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 CDG55_09060 f2e4c148c32b9c4e7badaaa45a7d84f3 342 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 13 342 4.9E-112 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09060 f2e4c148c32b9c4e7badaaa45a7d84f3 342 Gene3D G3DSA:3.20.20.70 11 342 1.6E-87 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_09060 f2e4c148c32b9c4e7badaaa45a7d84f3 342 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 13 342 36.791 T 13-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 CDG55_09060 f2e4c148c32b9c4e7badaaa45a7d84f3 342 Pfam PF13353 4Fe-4S single cluster domain 29 119 1.2E-7 T 13-10-2018 CDG55_11330 88a0a3003e99a04a7ffc31bb1a4d7809 492 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 15 479 1.7E-183 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_11330 88a0a3003e99a04a7ffc31bb1a4d7809 492 Pfam PF01425 Amidase 25 468 1.2E-160 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_11330 88a0a3003e99a04a7ffc31bb1a4d7809 492 Gene3D G3DSA:3.90.1300.10 3 487 1.2E-197 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_11330 88a0a3003e99a04a7ffc31bb1a4d7809 492 SUPERFAMILY SSF75304 1 484 5.89E-162 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_11330 88a0a3003e99a04a7ffc31bb1a4d7809 492 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 12 479 90.776 T 13-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_12855 53a06a1d84b358c36edab3f9971f5e76 265 Pfam PF01416 tRNA pseudouridine synthase 9 104 2.1E-7 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_12855 53a06a1d84b358c36edab3f9971f5e76 265 Pfam PF01416 tRNA pseudouridine synthase 144 246 3.0E-26 T 13-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_12855 53a06a1d84b358c36edab3f9971f5e76 265 PIRSF PIRSF001430 1 255 1.9E-76 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_12855 53a06a1d84b358c36edab3f9971f5e76 265 Gene3D G3DSA:3.30.70.660 107 242 5.9E-45 T 13-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 CDG55_12855 53a06a1d84b358c36edab3f9971f5e76 265 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 2 245 33.146 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_12855 53a06a1d84b358c36edab3f9971f5e76 265 SUPERFAMILY SSF55120 1 260 2.88E-86 T 13-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_12855 53a06a1d84b358c36edab3f9971f5e76 265 Gene3D G3DSA:3.30.70.580 1 106 6.2E-36 T 13-10-2018 CDG55_12855 53a06a1d84b358c36edab3f9971f5e76 265 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 1.2E-63 T 13-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 CDG55_04665 71549a69ad0d54089f154d18cbd81500 604 SUPERFAMILY SSF53850 35 597 1.01E-91 T 13-10-2018 CDG55_04665 71549a69ad0d54089f154d18cbd81500 604 PIRSF PIRSF002741 2 602 4.5E-60 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDG55_04665 71549a69ad0d54089f154d18cbd81500 604 Gene3D G3DSA:3.90.76.10 54 234 7.0E-92 T 13-10-2018 CDG55_04665 71549a69ad0d54089f154d18cbd81500 604 Gene3D G3DSA:3.10.105.10 346 576 7.0E-92 T 13-10-2018 CDG55_04665 71549a69ad0d54089f154d18cbd81500 604 Gene3D G3DSA:3.40.190.10 235 588 7.0E-92 T 13-10-2018 CDG55_04665 71549a69ad0d54089f154d18cbd81500 604 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 518 6.9E-68 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CDG55_11695 365f15b4b1a07be7333f377ad0b178c0 436 SUPERFAMILY SSF103473 16 431 2.22E-68 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_11695 365f15b4b1a07be7333f377ad0b178c0 436 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 27 418 1.9E-138 T 13-10-2018 IPR004736 MFS transporter, metabolite:H symporter GO:0016021|GO:0022857|GO:0055085 CDG55_11695 365f15b4b1a07be7333f377ad0b178c0 436 Pfam PF00083 Sugar (and other) transporter 22 431 4.0E-30 T 13-10-2018 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 CDG55_11695 365f15b4b1a07be7333f377ad0b178c0 436 Gene3D G3DSA:1.20.1250.20 16 435 1.6E-66 T 13-10-2018 CDG55_07375 6244dc6c8a6e1eddae4f9e4ac7f86cb5 69 SUPERFAMILY SSF50249 4 68 2.36E-23 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_07375 6244dc6c8a6e1eddae4f9e4ac7f86cb5 69 Gene3D G3DSA:2.40.50.140 4 68 1.6E-27 T 13-10-2018 CDG55_07375 6244dc6c8a6e1eddae4f9e4ac7f86cb5 69 PRINTS PR00050 Cold shock protein signature 7 22 6.6E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07375 6244dc6c8a6e1eddae4f9e4ac7f86cb5 69 PRINTS PR00050 Cold shock protein signature 42 60 6.6E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07375 6244dc6c8a6e1eddae4f9e4ac7f86cb5 69 PRINTS PR00050 Cold shock protein signature 27 36 6.6E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07375 6244dc6c8a6e1eddae4f9e4ac7f86cb5 69 SMART SM00357 6 69 9.3E-27 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CDG55_07375 6244dc6c8a6e1eddae4f9e4ac7f86cb5 69 PIRSF PIRSF002599 1 69 3.6E-23 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CDG55_07375 6244dc6c8a6e1eddae4f9e4ac7f86cb5 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 67 9.1E-27 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_00685 0682a74bc54e3c0aff7eca4729a1498a 481 SUPERFAMILY SSF53720 22 465 4.32E-101 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_00685 0682a74bc54e3c0aff7eca4729a1498a 481 Gene3D G3DSA:3.40.309.10 229 429 1.5E-138 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CDG55_00685 0682a74bc54e3c0aff7eca4729a1498a 481 PIRSF PIRSF036492 4 481 3.6E-148 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 CDG55_00685 0682a74bc54e3c0aff7eca4729a1498a 481 Gene3D G3DSA:3.40.605.10 26 449 1.5E-138 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_00685 0682a74bc54e3c0aff7eca4729a1498a 481 Pfam PF00171 Aldehyde dehydrogenase family 26 447 1.3E-73 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_01110 f06beb068d34d82589573e9039170404 234 SUPERFAMILY SSF53098 73 191 7.97E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_01110 f06beb068d34d82589573e9039170404 234 Pfam PF13610 DDE domain 75 212 1.0E-48 T 13-10-2018 IPR032874 DDE domain CDG55_08980 c6ce7d7edb8517ccc1ede99bd6a372fd 174 Gene3D G3DSA:3.90.190.10 3 155 2.0E-29 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CDG55_08980 c6ce7d7edb8517ccc1ede99bd6a372fd 174 SUPERFAMILY SSF52799 9 134 8.25E-15 T 13-10-2018 IPR029021 Protein-tyrosine phosphatase-like CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 Pfam PF12848 ABC transporter 167 283 5.1E-9 T 13-10-2018 IPR032781 ABC-transporter extension domain CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 SUPERFAMILY SSF52540 288 485 2.59E-35 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 Pfam PF00005 ABC transporter 313 436 5.3E-15 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 Gene3D G3DSA:3.40.50.300 289 490 2.2E-41 T 13-10-2018 CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 Gene3D G3DSA:3.40.50.300 63 234 1.9E-28 T 13-10-2018 CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 SUPERFAMILY SSF52540 3 189 1.88E-31 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 Gene3D G3DSA:3.40.50.300 4 62 3.7E-8 T 13-10-2018 CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 Pfam PF00005 ABC transporter 24 56 9.4E-6 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 SMART SM00382 321 488 4.6E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_00990 5418973fc0e6b837c762acaac063f2e8 491 SMART SM00382 29 173 4.8E-4 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_08065 6b5357b64dcf98d869995e516319c872 575 Gene3D G3DSA:3.40.50.300 326 575 6.7E-89 T 13-10-2018 CDG55_08065 6b5357b64dcf98d869995e516319c872 575 Pfam PF00664 ABC transporter transmembrane region 30 291 1.2E-45 T 13-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 CDG55_08065 6b5357b64dcf98d869995e516319c872 575 SUPERFAMILY SSF52540 324 570 1.22E-91 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08065 6b5357b64dcf98d869995e516319c872 575 SMART SM00382 360 547 1.6E-15 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_08065 6b5357b64dcf98d869995e516319c872 575 SUPERFAMILY SSF90123 10 321 4.45E-68 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CDG55_08065 6b5357b64dcf98d869995e516319c872 575 Pfam PF00005 ABC transporter 352 501 1.6E-31 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_08065 6b5357b64dcf98d869995e516319c872 575 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 8 574 3.3E-205 T 13-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 CDG55_08065 6b5357b64dcf98d869995e516319c872 575 Gene3D G3DSA:1.20.1560.10 1 324 1.6E-71 T 13-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 CDG55_11130 296b9c5253fda28c4b52eb74293e438e 556 Pfam PF02743 Cache domain 39 277 3.2E-16 T 13-10-2018 IPR033479 Double Cache domain 1 CDG55_11130 296b9c5253fda28c4b52eb74293e438e 556 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 395 554 1.7E-49 T 13-10-2018 IPR000160 GGDEF domain CDG55_11130 296b9c5253fda28c4b52eb74293e438e 556 Pfam PF00990 Diguanylate cyclase, GGDEF domain 399 553 8.6E-48 T 13-10-2018 IPR000160 GGDEF domain CDG55_11130 296b9c5253fda28c4b52eb74293e438e 556 Gene3D G3DSA:3.30.450.20 86 190 1.0E-17 T 13-10-2018 CDG55_11130 296b9c5253fda28c4b52eb74293e438e 556 SUPERFAMILY SSF55073 404 555 4.32E-47 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_11130 296b9c5253fda28c4b52eb74293e438e 556 SMART SM00267 388 556 2.7E-59 T 13-10-2018 IPR000160 GGDEF domain CDG55_11130 296b9c5253fda28c4b52eb74293e438e 556 Gene3D G3DSA:1.20.1480.50 278 374 5.9E-7 T 13-10-2018 CDG55_11130 296b9c5253fda28c4b52eb74293e438e 556 Gene3D G3DSA:3.30.70.270 385 556 3.8E-55 T 13-10-2018 CDG55_13390 a330216de7f6e332a112231df2131ae5 263 Gene3D G3DSA:3.20.20.70 6 263 4.1E-87 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_13390 a330216de7f6e332a112231df2131ae5 263 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 6 258 54.369 T 13-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_13390 a330216de7f6e332a112231df2131ae5 263 Pfam PF00121 Triosephosphate isomerase 9 255 1.9E-81 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_13390 a330216de7f6e332a112231df2131ae5 263 SUPERFAMILY SSF51351 7 259 4.45E-80 T 13-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_13390 a330216de7f6e332a112231df2131ae5 263 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 10 249 8.3E-54 T 13-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14710 de10a11b2f1b33bbe6b3dc1d845a2a84 338 Gene3D G3DSA:3.90.25.10 195 330 1.1E-136 T 13-10-2018 CDG55_14710 de10a11b2f1b33bbe6b3dc1d845a2a84 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 336 3.7E-135 T 13-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 CDG55_14710 de10a11b2f1b33bbe6b3dc1d845a2a84 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 325 2.1E-56 T 13-10-2018 IPR016040 NAD(P)-binding domain CDG55_14710 de10a11b2f1b33bbe6b3dc1d845a2a84 338 Gene3D G3DSA:3.40.50.720 4 275 1.1E-136 T 13-10-2018 CDG55_14710 de10a11b2f1b33bbe6b3dc1d845a2a84 338 SUPERFAMILY SSF51735 1 337 3.81E-95 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_00380 077e24a7ecb97aee9a6ac6932e60c9f4 139 Pfam PF14567 SMI1-KNR4 cell-wall 6 135 3.2E-32 T 13-10-2018 CDG55_00380 077e24a7ecb97aee9a6ac6932e60c9f4 139 Gene3D G3DSA:3.40.1580.10 5 138 1.2E-36 T 13-10-2018 IPR037883 Knr4/Smi1-like domain superfamily CDG55_00380 077e24a7ecb97aee9a6ac6932e60c9f4 139 SMART SM00860 26 133 1.1E-4 T 13-10-2018 IPR018958 Knr4/Smi1-like domain CDG55_00380 077e24a7ecb97aee9a6ac6932e60c9f4 139 SUPERFAMILY SSF160631 6 137 3.27E-35 T 13-10-2018 CDG55_06575 8763372a9f96477a1ce98615937ba301 74 SUPERFAMILY SSF143800 1 68 5.49E-26 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_06575 8763372a9f96477a1ce98615937ba301 74 PRINTS PR01249 Ribosomal protein L31 signature 32 47 4.5E-21 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_06575 8763372a9f96477a1ce98615937ba301 74 PRINTS PR01249 Ribosomal protein L31 signature 47 65 4.5E-21 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_06575 8763372a9f96477a1ce98615937ba301 74 PRINTS PR01249 Ribosomal protein L31 signature 2 19 4.5E-21 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_06575 8763372a9f96477a1ce98615937ba301 74 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 29.901 T 13-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_06575 8763372a9f96477a1ce98615937ba301 74 Gene3D G3DSA:2.30.170.50 1 70 7.5E-31 T 13-10-2018 CDG55_06575 8763372a9f96477a1ce98615937ba301 74 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 5.3E-33 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_06575 8763372a9f96477a1ce98615937ba301 74 Pfam PF01197 Ribosomal protein L31 1 65 1.2E-29 T 13-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 SUPERFAMILY SSF52374 3 277 7.88E-76 T 13-10-2018 CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 3 255 1.1E-102 T 13-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 241 4.3E-42 T 13-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 Gene3D G3DSA:3.40.50.620 78 214 3.2E-97 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 3 283 37.109 T 13-10-2018 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0004812|GO:0006400 CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 Gene3D G3DSA:3.40.50.620 3 277 3.2E-97 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 190 9.1E-15 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 166 176 9.1E-15 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 9.1E-15 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_13830 f8489ee55f56ebe6c658e096e3a29de6 287 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 9.1E-15 T 13-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 CDG55_11715 f64376f4fefcb8cb7034f5cddb12d296 213 SUPERFAMILY SSF52833 3 209 4.85E-68 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_11715 f64376f4fefcb8cb7034f5cddb12d296 213 PIRSF PIRSF000239 1 209 2.4E-78 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_11715 f64376f4fefcb8cb7034f5cddb12d296 213 Gene3D G3DSA:3.40.30.10 1 145 5.0E-48 T 13-10-2018 CDG55_11715 f64376f4fefcb8cb7034f5cddb12d296 213 Pfam PF00578 AhpC/TSA family 6 135 4.0E-30 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_11715 f64376f4fefcb8cb7034f5cddb12d296 213 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 196 3.5E-13 T 13-10-2018 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_11715 f64376f4fefcb8cb7034f5cddb12d296 213 Gene3D G3DSA:3.30.1020.10 146 210 1.2E-27 T 13-10-2018 CDG55_12425 975f15e06b646351451942095694cacf 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.292 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_12425 975f15e06b646351451942095694cacf 78 Pfam PF00830 Ribosomal L28 family 3 61 1.4E-26 T 13-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12425 975f15e06b646351451942095694cacf 78 SUPERFAMILY SSF143800 2 77 6.47E-30 T 13-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12425 975f15e06b646351451942095694cacf 78 Gene3D G3DSA:2.30.170.40 2 78 8.9E-33 T 13-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12425 975f15e06b646351451942095694cacf 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 6.9E-28 T 13-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_13350 44143427c632e313b14c53c59670fc98 128 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 5 117 24.822 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CDG55_13350 44143427c632e313b14c53c59670fc98 128 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 104 8.0E-50 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CDG55_13350 44143427c632e313b14c53c59670fc98 128 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 121 1.3E-25 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CDG55_13350 44143427c632e313b14c53c59670fc98 128 Pfam PF02033 Ribosome-binding factor A 6 114 1.9E-30 T 13-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 CDG55_13350 44143427c632e313b14c53c59670fc98 128 Gene3D G3DSA:3.30.300.20 2 111 1.2E-35 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_13350 44143427c632e313b14c53c59670fc98 128 SUPERFAMILY SSF89919 1 110 3.27E-31 T 13-10-2018 IPR023799 Ribosome-binding factor A domain superfamily CDG55_07255 0f1a1ad91f88f145e5a41c837450204d 327 Pfam PF00487 Fatty acid desaturase 60 305 3.1E-35 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 CDG55_01635 6d38907e6e6a0681a432ca4f4e5ff2a2 448 Gene3D G3DSA:3.40.50.1820 166 415 9.8E-27 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_01635 6d38907e6e6a0681a432ca4f4e5ff2a2 448 SUPERFAMILY SSF53474 155 372 2.39E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_01635 6d38907e6e6a0681a432ca4f4e5ff2a2 448 Pfam PF07819 PGAP1-like protein 152 374 1.4E-29 T 13-10-2018 IPR012908 GPI inositol-deacylase PGAP1-like GO:0016788 Reactome: R-HSA-162791 CDG55_01310 275119208e3cb7f85a236138d07d1748 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 223 237 1.8E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CDG55_01310 275119208e3cb7f85a236138d07d1748 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 368 384 1.8E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CDG55_01310 275119208e3cb7f85a236138d07d1748 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 416 433 1.8E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CDG55_01310 275119208e3cb7f85a236138d07d1748 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 318 330 1.8E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CDG55_01310 275119208e3cb7f85a236138d07d1748 435 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 252 262 1.8E-27 T 13-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase CDG55_01310 275119208e3cb7f85a236138d07d1748 435 SUPERFAMILY SSF53335 142 433 7.3E-68 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_01310 275119208e3cb7f85a236138d07d1748 435 Gene3D G3DSA:3.40.50.150 143 433 9.7E-75 T 13-10-2018 CDG55_01310 275119208e3cb7f85a236138d07d1748 435 SUPERFAMILY SSF48013 13 150 2.35E-28 T 13-10-2018 IPR035926 NusB-like superfamily CDG55_01310 275119208e3cb7f85a236138d07d1748 435 Pfam PF01189 16S rRNA methyltransferase RsmB/F 241 431 1.2E-54 T 13-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 CDG55_01310 275119208e3cb7f85a236138d07d1748 435 Gene3D G3DSA:1.10.940.10 9 142 1.4E-33 T 13-10-2018 IPR035926 NusB-like superfamily CDG55_01310 275119208e3cb7f85a236138d07d1748 435 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 19 433 1.1E-110 T 13-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 CDG55_01310 275119208e3cb7f85a236138d07d1748 435 Pfam PF01029 NusB family 14 131 2.1E-19 T 13-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 CDG55_01330 42f3af86ac98e64b2559c29ebc554440 431 Pfam PF00860 Permease family 30 399 3.0E-95 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CDG55_01330 42f3af86ac98e64b2559c29ebc554440 431 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 27 424 2.0E-109 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CDG55_10615 2a76d22cae359d758639ad313a47b7a7 503 SUPERFAMILY SSF53720 13 495 8.51E-163 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_10615 2a76d22cae359d758639ad313a47b7a7 503 Gene3D G3DSA:3.40.309.10 266 461 9.7E-164 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CDG55_10615 2a76d22cae359d758639ad313a47b7a7 503 Pfam PF00171 Aldehyde dehydrogenase family 27 490 1.8E-165 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_10615 2a76d22cae359d758639ad313a47b7a7 503 Gene3D G3DSA:3.40.605.10 23 489 9.7E-164 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_04815 2aa3b0112e7630f8aa5fcb9b550c2d96 193 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 35 192 5.6E-31 T 13-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 CDG55_04815 2aa3b0112e7630f8aa5fcb9b550c2d96 193 SUPERFAMILY SSF89392 21 192 2.35E-35 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX CDG55_04815 2aa3b0112e7630f8aa5fcb9b550c2d96 193 Pfam PF03550 Outer membrane lipoprotein LolB 42 192 1.2E-40 T 13-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 CDG55_04815 2aa3b0112e7630f8aa5fcb9b550c2d96 193 Gene3D G3DSA:2.50.20.10 25 192 1.3E-35 T 13-10-2018 CDG55_07030 d95c3b4aabdbd1721a77c288efb31c77 129 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 6.9E-68 T 13-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 CDG55_07030 d95c3b4aabdbd1721a77c288efb31c77 129 Pfam PF01592 NifU-like N terminal domain 2 127 7.0E-57 T 13-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 CDG55_07030 d95c3b4aabdbd1721a77c288efb31c77 129 SUPERFAMILY SSF82649 1 125 1.99E-49 T 13-10-2018 CDG55_07030 d95c3b4aabdbd1721a77c288efb31c77 129 Gene3D G3DSA:3.90.1010.10 1 128 2.3E-58 T 13-10-2018 CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 SMART SM00829 12 367 6.9E-5 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 SUPERFAMILY SSF50129 318 369 4.0E-12 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 SUPERFAMILY SSF50129 1 184 1.52E-70 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2 369 8.5E-220 T 13-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 Gene3D G3DSA:3.90.180.10 6 364 5.3E-149 T 13-10-2018 CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 SUPERFAMILY SSF51735 161 334 1.79E-45 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 154 3.6E-26 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 Gene3D G3DSA:3.40.50.720 174 312 5.3E-149 T 13-10-2018 CDG55_09320 7e1604ea090942c8cce734be1f973cae 370 Pfam PF00107 Zinc-binding dehydrogenase 197 330 1.3E-24 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDG55_02610 e0c02b3fe7171b524719991cbe595c82 341 SUPERFAMILY SSF53448 13 226 1.5E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_02610 e0c02b3fe7171b524719991cbe595c82 341 Pfam PF00535 Glycosyl transferase family 2 20 128 3.4E-22 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDG55_02610 e0c02b3fe7171b524719991cbe595c82 341 Gene3D G3DSA:3.90.550.10 4 271 1.2E-43 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_14170 536d3c48dce4fe08ec8b24086959d8bc 198 SUPERFAMILY SSF46689 2 78 2.44E-13 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_14170 536d3c48dce4fe08ec8b24086959d8bc 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 17 63 3.7E-12 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14170 536d3c48dce4fe08ec8b24086959d8bc 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 38 61 1.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14170 536d3c48dce4fe08ec8b24086959d8bc 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 17 30 1.8E-7 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_14170 536d3c48dce4fe08ec8b24086959d8bc 198 Gene3D G3DSA:1.10.357.10 13 198 3.2E-21 T 13-10-2018 CDG55_14750 851050c938cebfd903c1c36fbd3aedc8 393 SUPERFAMILY SSF53756 51 391 1.31E-26 T 13-10-2018 CDG55_14750 851050c938cebfd903c1c36fbd3aedc8 393 Gene3D G3DSA:3.40.50.2000 6 195 1.1E-8 T 13-10-2018 CDG55_14750 851050c938cebfd903c1c36fbd3aedc8 393 Pfam PF00534 Glycosyl transferases group 1 211 360 6.3E-10 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CDG55_14750 851050c938cebfd903c1c36fbd3aedc8 393 Gene3D G3DSA:3.40.50.2000 196 375 5.7E-15 T 13-10-2018 CDG55_04710 c7b8b4ab6c89a69a7488ea18acbcea8e 205 Gene3D G3DSA:3.90.870.10 2 205 2.7E-58 T 13-10-2018 CDG55_04710 c7b8b4ab6c89a69a7488ea18acbcea8e 205 Pfam PF01300 Telomere recombination 22 197 1.7E-42 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CDG55_04710 c7b8b4ab6c89a69a7488ea18acbcea8e 205 SUPERFAMILY SSF55821 3 203 1.31E-57 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CDG55_04710 c7b8b4ab6c89a69a7488ea18acbcea8e 205 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 6 200 2.8E-57 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CDG55_02190 ae63440de69c8453d5b4553c944d882c 625 Pfam PF02705 K+ potassium transporter 15 546 5.7E-206 T 13-10-2018 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 CDG55_02190 ae63440de69c8453d5b4553c944d882c 625 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 6 625 33.793 T 13-10-2018 IPR023051 Potassium uptake protein, low affinity, Kup CDG55_12540 2c47f214344e18da5bd67f77420bc523 347 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 343 3.6E-115 T 13-10-2018 IPR017686 Phage/plasmid-like protein CDG55_12540 2c47f214344e18da5bd67f77420bc523 347 Pfam PF06067 Domain of unknown function (DUF932) 77 327 1.5E-75 T 13-10-2018 IPR026325 Protein of unknown function DUF932 CDG55_09870 46185ee3b2bdb99a462463175eadf603 525 Gene3D G3DSA:3.10.520.20 56 364 2.3E-66 T 13-10-2018 CDG55_09870 46185ee3b2bdb99a462463175eadf603 525 SUPERFAMILY SSF143631 60 357 2.56E-58 T 13-10-2018 IPR003374 ApbE-like superfamily CDG55_09870 46185ee3b2bdb99a462463175eadf603 525 Gene3D G3DSA:2.60.40.4070 387 494 1.6E-7 T 13-10-2018 CDG55_09870 46185ee3b2bdb99a462463175eadf603 525 Pfam PF10029 Predicted periplasmic protein (DUF2271) 384 515 1.2E-38 T 13-10-2018 IPR014469 Protein of unknown function DUF2271 CDG55_09870 46185ee3b2bdb99a462463175eadf603 525 Pfam PF02424 ApbE family 67 334 5.8E-56 T 13-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 CDG55_04575 36268587c9e1d4705bd2e8627f6d0def 266 Pfam PF01925 Sulfite exporter TauE/SafE 7 259 4.1E-52 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CDG55_12110 fbae8a52db821ebf7b56b1fd7ff7ddee 428 Gene3D G3DSA:3.40.50.2000 224 405 4.7E-65 T 13-10-2018 CDG55_12110 fbae8a52db821ebf7b56b1fd7ff7ddee 428 Pfam PF00534 Glycosyl transferases group 1 236 390 1.1E-32 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CDG55_12110 fbae8a52db821ebf7b56b1fd7ff7ddee 428 Pfam PF13439 Glycosyltransferase Family 4 59 226 7.5E-23 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDG55_12110 fbae8a52db821ebf7b56b1fd7ff7ddee 428 Gene3D G3DSA:3.40.50.2000 50 223 4.7E-65 T 13-10-2018 CDG55_12110 fbae8a52db821ebf7b56b1fd7ff7ddee 428 SUPERFAMILY SSF53756 47 419 1.39E-72 T 13-10-2018 CDG55_14555 eb659da3937c079635d21a628cd1168a 250 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 133 147 6.8E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 CDG55_14555 eb659da3937c079635d21a628cd1168a 250 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 74 89 6.8E-9 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 CDG55_14555 eb659da3937c079635d21a628cd1168a 250 Pfam PF00089 Trypsin 43 194 5.9E-27 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 CDG55_14555 eb659da3937c079635d21a628cd1168a 250 SUPERFAMILY SSF50494 12 204 2.04E-39 T 13-10-2018 IPR009003 Peptidase S1, PA clan CDG55_14555 eb659da3937c079635d21a628cd1168a 250 SMART SM00020 42 243 4.6E-8 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 CDG55_14555 eb659da3937c079635d21a628cd1168a 250 Gene3D G3DSA:2.40.10.10 43 207 1.4E-34 T 13-10-2018 CDG55_14555 eb659da3937c079635d21a628cd1168a 250 Gene3D G3DSA:2.40.10.10 55 156 1.4E-34 T 13-10-2018 CDG55_06450 97e11d89efc2b0951b15ca53e69503cf 502 Pfam PF11815 Domain of unknown function (DUF3336) 15 149 1.4E-34 T 13-10-2018 IPR021771 Triacylglycerol lipase GO:0004806|GO:0006629 CDG55_06450 97e11d89efc2b0951b15ca53e69503cf 502 Pfam PF01734 Patatin-like phospholipase 157 339 1.6E-23 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 CDG55_06450 97e11d89efc2b0951b15ca53e69503cf 502 Gene3D G3DSA:3.40.1090.10 247 385 1.5E-13 T 13-10-2018 CDG55_06450 97e11d89efc2b0951b15ca53e69503cf 502 Gene3D G3DSA:3.40.1090.10 145 246 4.6E-12 T 13-10-2018 CDG55_06450 97e11d89efc2b0951b15ca53e69503cf 502 SUPERFAMILY SSF52151 156 482 3.14E-49 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CDG55_10325 368d3277c8ccdaac4d63f6db4a228d0e 231 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 3 224 4.1E-59 T 13-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 CDG55_10325 368d3277c8ccdaac4d63f6db4a228d0e 231 Gene3D G3DSA:1.10.8.60 161 226 4.0E-5 T 13-10-2018 CDG55_10325 368d3277c8ccdaac4d63f6db4a228d0e 231 Gene3D G3DSA:3.40.50.300 29 155 4.2E-22 T 13-10-2018 CDG55_10325 368d3277c8ccdaac4d63f6db4a228d0e 231 Pfam PF00308 Bacterial dnaA protein 35 189 2.9E-10 T 13-10-2018 IPR013317 Chromosomal replication initiator protein DnaA CDG55_10325 368d3277c8ccdaac4d63f6db4a228d0e 231 SUPERFAMILY SSF52540 30 197 1.07E-16 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10955 fd13734e3f77f5943d9cbd9fa6228456 174 Gene3D G3DSA:1.20.120.740 9 163 5.8E-7 T 13-10-2018 CDG55_10955 fd13734e3f77f5943d9cbd9fa6228456 174 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 6 169 1.7E-23 T 13-10-2018 IPR011978 Uncharacterised protein family UPF0149 CDG55_10955 fd13734e3f77f5943d9cbd9fa6228456 174 SUPERFAMILY SSF101327 4 172 5.23E-25 T 13-10-2018 IPR036255 YgfB-like superfamily CDG55_10955 fd13734e3f77f5943d9cbd9fa6228456 174 Pfam PF03695 Uncharacterised protein family (UPF0149) 9 170 1.3E-21 T 13-10-2018 IPR011978 Uncharacterised protein family UPF0149 CDG55_14915 401e9fb590dc72bba316356141184d6e 268 SUPERFAMILY SSF52540 34 251 1.05E-65 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_14915 401e9fb590dc72bba316356141184d6e 268 Pfam PF00005 ABC transporter 49 185 6.9E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_14915 401e9fb590dc72bba316356141184d6e 268 SMART SM00382 58 235 2.8E-18 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_14915 401e9fb590dc72bba316356141184d6e 268 Gene3D G3DSA:3.40.50.300 18 256 4.9E-63 T 13-10-2018 CDG55_02005 d08277035ea46ba09247dd628491cd4e 286 Pfam PF02678 Pirin 22 127 1.0E-30 T 13-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 CDG55_02005 d08277035ea46ba09247dd628491cd4e 286 Gene3D G3DSA:2.60.120.10 149 253 8.6E-76 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_02005 d08277035ea46ba09247dd628491cd4e 286 SUPERFAMILY SSF51182 4 285 1.2E-72 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CDG55_02005 d08277035ea46ba09247dd628491cd4e 286 Gene3D G3DSA:2.60.120.10 17 279 8.6E-76 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_02005 d08277035ea46ba09247dd628491cd4e 286 PIRSF PIRSF006232 2 286 2.5E-79 T 13-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 CDG55_02005 d08277035ea46ba09247dd628491cd4e 286 Pfam PF05726 Pirin C-terminal cupin domain 183 284 1.5E-25 T 13-10-2018 IPR008778 Pirin, C-terminal domain Reactome: R-HSA-8935690 CDG55_09315 297c850a208b483a10d0df148a331939 279 SUPERFAMILY SSF53474 1 274 1.17E-85 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_09315 297c850a208b483a10d0df148a331939 279 Pfam PF00756 Putative esterase 21 269 4.7E-66 T 13-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 CDG55_09315 297c850a208b483a10d0df148a331939 279 Gene3D G3DSA:3.40.50.1820 1 276 2.9E-95 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_09315 297c850a208b483a10d0df148a331939 279 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 2 273 3.0E-125 T 13-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 CDG55_04635 6f187358a0d3d0fdb98bd964180a0a2b 384 Gene3D G3DSA:3.90.1150.10 40 382 8.9E-114 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_04635 6f187358a0d3d0fdb98bd964180a0a2b 384 Pfam PF00155 Aminotransferase class I and II 39 382 7.4E-56 T 13-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 CDG55_04635 6f187358a0d3d0fdb98bd964180a0a2b 384 Gene3D G3DSA:3.40.640.10 56 291 8.9E-114 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_04635 6f187358a0d3d0fdb98bd964180a0a2b 384 SUPERFAMILY SSF53383 3 384 3.33E-88 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_10380 a7421f43158771b8cecf7812e83dc3f7 195 Pfam PF07238 PilZ domain 111 184 4.4E-7 T 13-10-2018 IPR009875 PilZ domain GO:0035438 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 SUPERFAMILY SSF55681 116 419 1.58E-103 T 13-10-2018 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 PIRSF PIRSF001529 1 423 1.6E-182 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 Gene3D G3DSA:3.30.930.10 105 423 2.7E-117 T 13-10-2018 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 Gene3D G3DSA:1.10.287.40 1 104 5.5E-23 T 13-10-2018 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 9.0E-30 T 13-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 PRINTS PR00981 Seryl-tRNA synthetase signature 333 349 8.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 PRINTS PR00981 Seryl-tRNA synthetase signature 264 276 8.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 PRINTS PR00981 Seryl-tRNA synthetase signature 316 329 8.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 PRINTS PR00981 Seryl-tRNA synthetase signature 351 367 8.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 PRINTS PR00981 Seryl-tRNA synthetase signature 276 289 8.1E-33 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 399 1.4E-39 T 13-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 SUPERFAMILY SSF46589 1 112 1.88E-29 T 13-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 421 41.082 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDG55_11020 e46d2722e628cc8179d412e27f7ebcac 423 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 416 1.9E-172 T 13-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 CDG55_08995 b2dd303aadae64424496652c17aec4a7 414 Gene3D G3DSA:3.50.50.60 108 408 4.2E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08995 b2dd303aadae64424496652c17aec4a7 414 SUPERFAMILY SSF54373 277 369 2.22E-8 T 13-10-2018 CDG55_08995 b2dd303aadae64424496652c17aec4a7 414 Gene3D G3DSA:3.30.9.10 133 368 4.2E-35 T 13-10-2018 CDG55_08995 b2dd303aadae64424496652c17aec4a7 414 Gene3D G3DSA:3.50.50.60 4 51 1.4E-10 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08995 b2dd303aadae64424496652c17aec4a7 414 Pfam PF01266 FAD dependent oxidoreductase 3 406 2.4E-56 T 13-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 CDG55_08995 b2dd303aadae64424496652c17aec4a7 414 SUPERFAMILY SSF51905 1 411 1.68E-42 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_07930 a50ded79a5e726caa3d07ff63663ffc4 205 SUPERFAMILY SSF109604 21 202 4.13E-25 T 13-10-2018 CDG55_07930 a50ded79a5e726caa3d07ff63663ffc4 205 PIRSF PIRSF035170 3 204 1.4E-47 T 13-10-2018 IPR009218 Predicted HD phosphohydrolase CDG55_07930 a50ded79a5e726caa3d07ff63663ffc4 205 Gene3D G3DSA:1.10.3210.10 18 180 1.0E-6 T 13-10-2018 CDG55_10565 f2b3bb412c9d2611a83bba906c60ab24 205 SUPERFAMILY SSF52540 13 205 6.29E-56 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_10565 f2b3bb412c9d2611a83bba906c60ab24 205 SMART SM00382 22 199 1.2E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_10565 f2b3bb412c9d2611a83bba906c60ab24 205 Gene3D G3DSA:3.40.50.300 2 205 1.3E-52 T 13-10-2018 CDG55_10565 f2b3bb412c9d2611a83bba906c60ab24 205 Pfam PF00005 ABC transporter 23 159 7.7E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_03800 128dfe67ea9c5cdbebb36ae40ac87240 135 Gene3D G3DSA:2.60.40.3230 31 135 1.0E-21 T 13-10-2018 IPR038483 YcfL-like superfamily CDG55_03800 128dfe67ea9c5cdbebb36ae40ac87240 135 Pfam PF07233 Protein of unknown function (DUF1425) 44 132 2.8E-20 T 13-10-2018 IPR010824 Protein of unknown function DUF1425 CDG55_01825 fcb4969ce296253840e21585a701002b 905 Gene3D G3DSA:3.40.50.920 702 883 2.5E-66 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CDG55_01825 fcb4969ce296253840e21585a701002b 905 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 136 291 7.2E-8 T 13-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 CDG55_01825 fcb4969ce296253840e21585a701002b 905 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 880 0.0 T 13-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 CDG55_01825 fcb4969ce296253840e21585a701002b 905 PIRSF PIRSF000156 2 884 0.0 T 13-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 CDG55_01825 fcb4969ce296253840e21585a701002b 905 SUPERFAMILY SSF52518 469 696 1.0E-94 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_01825 fcb4969ce296253840e21585a701002b 905 SUPERFAMILY SSF52518 54 464 4.08E-136 T 13-10-2018 IPR029061 Thiamin diphosphate-binding fold CDG55_01825 fcb4969ce296253840e21585a701002b 905 SUPERFAMILY SSF52922 697 879 4.89E-50 T 13-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 CDG55_01825 fcb4969ce296253840e21585a701002b 905 Gene3D G3DSA:3.40.50.970 468 701 3.6E-106 T 13-10-2018 CDG55_01825 fcb4969ce296253840e21585a701002b 905 Gene3D G3DSA:3.40.50.970 53 467 1.4E-131 T 13-10-2018 CDG55_03200 68eee1853237098482299234a0f29593 58 PIRSF PIRSF002211 1 58 4.9E-25 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03200 68eee1853237098482299234a0f29593 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 8.9E-18 T 13-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CDG55_03200 68eee1853237098482299234a0f29593 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.409 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03200 68eee1853237098482299234a0f29593 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 2.6E-20 T 13-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03200 68eee1853237098482299234a0f29593 58 SUPERFAMILY SSF55129 1 58 1.05E-20 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CDG55_03200 68eee1853237098482299234a0f29593 58 Gene3D G3DSA:3.30.1390.20 1 58 1.0E-23 T 13-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CDG55_00655 5fdb44b7da283df257ae90c5aade464c 431 Pfam PF13438 Domain of unknown function (DUF4113) 379 430 2.4E-14 T 13-10-2018 IPR025188 Domain of unknown function DUF4113 CDG55_00655 5fdb44b7da283df257ae90c5aade464c 431 Pfam PF00817 impB/mucB/samB family 11 158 1.0E-30 T 13-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDG55_00655 5fdb44b7da283df257ae90c5aade464c 431 Gene3D G3DSA:1.10.150.20 178 239 4.0E-8 T 13-10-2018 CDG55_00655 5fdb44b7da283df257ae90c5aade464c 431 Pfam PF11799 impB/mucB/samB family C-terminal domain 252 361 3.6E-12 T 13-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 CDG55_00655 5fdb44b7da283df257ae90c5aade464c 431 SUPERFAMILY SSF56672 7 246 5.43E-63 T 13-10-2018 CDG55_00655 5fdb44b7da283df257ae90c5aade464c 431 Gene3D G3DSA:3.30.70.270 10 166 2.4E-39 T 13-10-2018 CDG55_00655 5fdb44b7da283df257ae90c5aade464c 431 Gene3D G3DSA:2.30.40.20 16 79 2.4E-39 T 13-10-2018 CDG55_03645 f5696a282402d6a27b74e94f781d2571 246 SUPERFAMILY SSF47781 21 96 9.21E-10 T 13-10-2018 IPR010994 RuvA domain 2-like CDG55_03645 f5696a282402d6a27b74e94f781d2571 246 TIGRFAM TIGR00608 radc: DNA repair protein RadC 17 231 2.0E-57 T 13-10-2018 IPR001405 Uncharacterised protein family UPF0758 CDG55_03645 f5696a282402d6a27b74e94f781d2571 246 Pfam PF04002 RadC-like JAB domain 112 229 8.3E-35 T 13-10-2018 IPR025657 RadC-like JAB domain CDG55_03645 f5696a282402d6a27b74e94f781d2571 246 Gene3D G3DSA:3.40.140.10 108 231 3.4E-35 T 13-10-2018 CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 PIRSF PIRSF000077 35 139 6.6E-30 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 Pfam PF00085 Thioredoxin 38 138 9.8E-28 T 13-10-2018 IPR013766 Thioredoxin domain GO:0045454 CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 SUPERFAMILY SSF52833 22 139 4.07E-35 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 PRINTS PR00421 Thioredoxin family signature 56 64 5.8E-7 T 13-10-2018 CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 PRINTS PR00421 Thioredoxin family signature 103 114 5.8E-7 T 13-10-2018 CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 PRINTS PR00421 Thioredoxin family signature 64 73 5.8E-7 T 13-10-2018 CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 Gene3D G3DSA:2.20.28.140 1 33 2.0E-14 T 13-10-2018 CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 TIGRFAM TIGR01068 thioredoxin: thioredoxin 41 138 3.0E-30 T 13-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 CDG55_03590 8b3dd69b231a364d17b9c51867efac34 140 Gene3D G3DSA:3.40.30.10 37 140 1.2E-30 T 13-10-2018 CDG55_14050 85b073beb2ff4c57d9d46d016a5d6f28 614 Gene3D G3DSA:2.130.10.10 17 285 3.3E-13 T 13-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 CDG55_14050 85b073beb2ff4c57d9d46d016a5d6f28 614 SUPERFAMILY SSF82171 131 612 2.63E-5 T 13-10-2018 CDG55_14050 85b073beb2ff4c57d9d46d016a5d6f28 614 SUPERFAMILY SSF51004 58 280 3.4E-18 T 13-10-2018 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily CDG55_02855 0534f62c467368376398b0d816dda97d 207 SUPERFAMILY SSF53335 33 192 4.02E-27 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_02855 0534f62c467368376398b0d816dda97d 207 Pfam PF08241 Methyltransferase domain 40 132 1.9E-16 T 13-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 CDG55_02855 0534f62c467368376398b0d816dda97d 207 Gene3D G3DSA:3.40.50.150 30 202 1.4E-23 T 13-10-2018 CDG55_05335 96d8aa3ba21fd76bceddf8a54a046504 665 Gene3D G3DSA:3.20.20.370 33 299 1.3E-69 T 13-10-2018 CDG55_05335 96d8aa3ba21fd76bceddf8a54a046504 665 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 314 638 1.1E-146 T 13-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal CDG55_05335 96d8aa3ba21fd76bceddf8a54a046504 665 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 38 658 9.9E-264 T 13-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 CDG55_05335 96d8aa3ba21fd76bceddf8a54a046504 665 SUPERFAMILY SSF88713 54 281 1.13E-34 T 13-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 CDG55_05335 96d8aa3ba21fd76bceddf8a54a046504 665 Pfam PF01522 Polysaccharide deacetylase 93 258 4.3E-24 T 13-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 CDG55_05335 96d8aa3ba21fd76bceddf8a54a046504 665 Gene3D G3DSA:3.20.20.80 303 662 1.5E-138 T 13-10-2018 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 90 100 4.2E-7 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 191 203 4.2E-7 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 333 350 4.2E-7 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 50 61 4.2E-7 T 13-10-2018 IPR001702 Porin, Gram-negative type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00184 Neisseria sp. porin signature 52 77 2.0E-8 T 13-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00184 Neisseria sp. porin signature 192 209 2.0E-8 T 13-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00184 Neisseria sp. porin signature 330 354 2.0E-8 T 13-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00184 Neisseria sp. porin signature 147 164 2.0E-8 T 13-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 PRINTS PR00184 Neisseria sp. porin signature 88 107 2.0E-8 T 13-10-2018 IPR002299 Porin, Neisseria sp. type GO:0015288|GO:0016020|GO:0055085 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 Pfam PF13609 Gram-negative porin 8 354 5.8E-30 T 13-10-2018 CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 Gene3D G3DSA:2.40.160.10 21 376 6.8E-58 T 13-10-2018 IPR023614 Porin domain superfamily CDG55_11165 b3e1644be545a8ec9ce754c001cb7f5f 376 SUPERFAMILY SSF56935 22 376 2.62E-48 T 13-10-2018 CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 Pfam PF00696 Amino acid kinase family 33 233 1.8E-22 T 13-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 Gene3D G3DSA:3.40.1160.10 14 297 8.9E-90 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 16 449 5.9E-179 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 Pfam PF00583 Acetyltransferase (GNAT) family 331 410 3.4E-8 T 13-10-2018 IPR000182 GNAT domain CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 SUPERFAMILY SSF55729 302 427 3.3E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 PIRSF PIRSF000423 6 450 1.6E-192 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 Gene3D G3DSA:3.40.630.30 298 450 1.9E-35 T 13-10-2018 CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 450 204.269 T 13-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 CDG55_14895 61d8f745c0721bfcb537d990cabaf892 451 SUPERFAMILY SSF53633 12 297 4.75E-69 T 13-10-2018 IPR036393 Acetylglutamate kinase-like superfamily CDG55_13935 eccdb17ecc149191a9d43cfe97038cb8 135 SUPERFAMILY SSF102400 1 134 8.5E-31 T 13-10-2018 IPR036768 DNA polymerase III subunit chi superfamily CDG55_13935 eccdb17ecc149191a9d43cfe97038cb8 135 Gene3D G3DSA:3.40.50.10110 1 134 1.8E-28 T 13-10-2018 IPR036768 DNA polymerase III subunit chi superfamily CDG55_13935 eccdb17ecc149191a9d43cfe97038cb8 135 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 130 2.8E-28 T 13-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 CDG55_11875 7538ab59f3f570eb0832dd7b42d4d037 257 Pfam PF13803 Domain of unknown function (DUF4184) 1 235 5.0E-37 T 13-10-2018 IPR025238 Protein of unknown function DUF4184 CDG55_10995 2415ad35dfe0612a918afad97b3e896f 184 SUPERFAMILY SSF52218 1 182 1.14E-39 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_10995 2415ad35dfe0612a918afad97b3e896f 184 Gene3D G3DSA:3.40.50.360 1 184 3.7E-53 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_10995 2415ad35dfe0612a918afad97b3e896f 184 Pfam PF12724 Flavodoxin domain 6 75 1.9E-8 T 13-10-2018 IPR026816 Flavodoxin domain CDG55_02995 947137c53b72d043f28d31be69d1623e 272 SMART SM00382 37 225 5.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_02995 947137c53b72d043f28d31be69d1623e 272 Gene3D G3DSA:3.40.50.300 10 265 2.7E-66 T 13-10-2018 CDG55_02995 947137c53b72d043f28d31be69d1623e 272 Pfam PF00005 ABC transporter 28 177 7.2E-30 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_02995 947137c53b72d043f28d31be69d1623e 272 SUPERFAMILY SSF52540 12 240 4.06E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08945 c268008bffaaf226a7d9c6904d30b9fa 184 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 184 7.7E-65 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CDG55_08945 c268008bffaaf226a7d9c6904d30b9fa 184 Gene3D G3DSA:3.30.1360.40 31 104 6.7E-62 T 13-10-2018 CDG55_08945 c268008bffaaf226a7d9c6904d30b9fa 184 Pfam PF01765 Ribosome recycling factor 21 182 1.6E-58 T 13-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 CDG55_08945 c268008bffaaf226a7d9c6904d30b9fa 184 Gene3D G3DSA:1.10.132.20 12 181 6.7E-62 T 13-10-2018 CDG55_08945 c268008bffaaf226a7d9c6904d30b9fa 184 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 184 25.341 T 13-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 CDG55_08945 c268008bffaaf226a7d9c6904d30b9fa 184 SUPERFAMILY SSF55194 1 184 3.4E-66 T 13-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 CDG55_07250 3377cf023f3f72be16c410430aa25f5a 265 Pfam PF08223 PaaX-like protein C-terminal domain 170 252 7.6E-6 T 13-10-2018 IPR013225 PaaX-like, C-terminal CDG55_07250 3377cf023f3f72be16c410430aa25f5a 265 Gene3D G3DSA:1.10.10.10 4 73 4.2E-9 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07250 3377cf023f3f72be16c410430aa25f5a 265 Pfam PF07848 PaaX-like protein 8 68 4.0E-6 T 13-10-2018 IPR012906 PaaX-like, N-terminal CDG55_15140 25de5e435d5c7d9f85420d6fbb42b298 393 Pfam PF00437 Type II/IV secretion system protein 88 282 3.9E-39 T 13-10-2018 IPR001482 Type II/IV secretion system protein CDG55_15140 25de5e435d5c7d9f85420d6fbb42b298 393 Gene3D G3DSA:3.30.450.90 5 111 4.4E-30 T 13-10-2018 CDG55_15140 25de5e435d5c7d9f85420d6fbb42b298 393 Gene3D G3DSA:3.40.50.300 112 369 2.2E-88 T 13-10-2018 CDG55_15140 25de5e435d5c7d9f85420d6fbb42b298 393 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 15 354 1.6E-139 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 CDG55_15140 25de5e435d5c7d9f85420d6fbb42b298 393 SUPERFAMILY SSF52540 14 348 4.39E-69 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03360 1738a7b78bd9b31cc8b38d21d82f3581 270 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 266 2.9E-79 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CDG55_03360 1738a7b78bd9b31cc8b38d21d82f3581 270 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 257 5.0E-74 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CDG55_03360 1738a7b78bd9b31cc8b38d21d82f3581 270 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 262 19.468 T 13-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 CDG55_03850 e786d77a6da2c8658006901ea7b9b636 89 Gene3D G3DSA:3.30.1340.10 1 88 9.3E-26 T 13-10-2018 IPR035895 HPr-like superfamily CDG55_03850 e786d77a6da2c8658006901ea7b9b636 89 Pfam PF00381 PTS HPr component phosphorylation site 5 82 2.9E-23 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CDG55_03850 e786d77a6da2c8658006901ea7b9b636 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 3.9E-24 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CDG55_03850 e786d77a6da2c8658006901ea7b9b636 89 SUPERFAMILY SSF55594 1 87 4.84E-24 T 13-10-2018 IPR035895 HPr-like superfamily CDG55_03850 e786d77a6da2c8658006901ea7b9b636 89 PRINTS PR00107 Phosphocarrier protein signature 53 70 1.3E-12 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CDG55_03850 e786d77a6da2c8658006901ea7b9b636 89 PRINTS PR00107 Phosphocarrier protein signature 38 53 1.3E-12 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CDG55_03850 e786d77a6da2c8658006901ea7b9b636 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.3E-12 T 13-10-2018 IPR000032 Phosphocarrier protein HPr-like CDG55_02475 a28f61201fe9473732044c491118f0dc 175 Pfam PF04351 Pilus assembly protein, PilP 27 170 1.1E-42 T 13-10-2018 IPR007446 Pilus assembly protein PilP CDG55_02475 a28f61201fe9473732044c491118f0dc 175 Gene3D G3DSA:2.30.30.830 77 171 6.6E-29 T 13-10-2018 CDG55_02475 a28f61201fe9473732044c491118f0dc 175 PIRSF PIRSF016481 1 172 1.4E-36 T 13-10-2018 IPR007446 Pilus assembly protein PilP CDG55_00500 11a14165b9f48e49cb97408b9e6b17f1 271 Pfam PF00809 Pterin binding enzyme 8 249 3.6E-71 T 13-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_00500 11a14165b9f48e49cb97408b9e6b17f1 271 SUPERFAMILY SSF51717 3 266 2.22E-72 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_00500 11a14165b9f48e49cb97408b9e6b17f1 271 Gene3D G3DSA:3.20.20.20 1 270 1.5E-75 T 13-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 CDG55_00500 11a14165b9f48e49cb97408b9e6b17f1 271 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 7 263 7.8E-75 T 13-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 CDG55_06345 0477290850e35dddca4cd1c8c5e9ad3e 705 Gene3D G3DSA:2.40.170.20 174 705 8.4E-43 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_06345 0477290850e35dddca4cd1c8c5e9ad3e 705 Gene3D G3DSA:2.170.130.10 50 167 6.8E-13 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_06345 0477290850e35dddca4cd1c8c5e9ad3e 705 Pfam PF00593 TonB dependent receptor 232 703 9.5E-24 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_06345 0477290850e35dddca4cd1c8c5e9ad3e 705 Pfam PF07715 TonB-dependent Receptor Plug Domain 52 161 5.4E-16 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_06345 0477290850e35dddca4cd1c8c5e9ad3e 705 SUPERFAMILY SSF56935 28 705 3.85E-73 T 13-10-2018 CDG55_07305 19c7b6dbd7c36007457cc9472b9a9460 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 71 108 3.4E-5 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_07305 19c7b6dbd7c36007457cc9472b9a9460 270 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 152 8.8E-5 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_07305 19c7b6dbd7c36007457cc9472b9a9460 270 SUPERFAMILY SSF51161 4 168 1.52E-55 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_07305 19c7b6dbd7c36007457cc9472b9a9460 270 Gene3D G3DSA:2.160.10.10 67 189 9.8E-37 T 13-10-2018 CDG55_07305 19c7b6dbd7c36007457cc9472b9a9460 270 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 166 6.7E-75 T 13-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CDG55_07305 19c7b6dbd7c36007457cc9472b9a9460 270 Gene3D G3DSA:1.10.3130.10 1 66 8.2E-24 T 13-10-2018 CDG55_07305 19c7b6dbd7c36007457cc9472b9a9460 270 Pfam PF06426 Serine acetyltransferase, N-terminal 2 35 2.0E-4 T 13-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 CDG55_08130 774009f800290328ad67c4d1c3265d31 373 SUPERFAMILY SSF52096 12 341 4.21E-50 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_08130 774009f800290328ad67c4d1c3265d31 373 Pfam PF16113 Enoyl-CoA hydratase/isomerase 23 342 1.3E-84 T 13-10-2018 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 Reactome: R-HSA-70895 CDG55_08130 774009f800290328ad67c4d1c3265d31 373 Gene3D G3DSA:3.90.226.10 12 353 3.7E-87 T 13-10-2018 CDG55_09385 452877f8949c894787b350931e9c99ec 256 Gene3D G3DSA:1.20.1050.10 125 225 1.0E-6 T 13-10-2018 CDG55_09385 452877f8949c894787b350931e9c99ec 256 Gene3D G3DSA:3.40.30.10 1 96 5.9E-15 T 13-10-2018 CDG55_09385 452877f8949c894787b350931e9c99ec 256 SUPERFAMILY SSF47616 146 205 2.92E-8 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CDG55_09385 452877f8949c894787b350931e9c99ec 256 SUPERFAMILY SSF52833 2 93 2.17E-18 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_09385 452877f8949c894787b350931e9c99ec 256 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 1.3E-15 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_13545 e16c9f6ca7c6f9982a47e412049fbca1 257 Pfam PF09339 IclR helix-turn-helix domain 8 54 1.4E-5 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDG55_13545 e16c9f6ca7c6f9982a47e412049fbca1 257 Gene3D G3DSA:3.30.450.40 78 243 2.5E-24 T 13-10-2018 IPR029016 GAF-like domain superfamily CDG55_13545 e16c9f6ca7c6f9982a47e412049fbca1 257 SUPERFAMILY SSF46785 3 74 2.73E-9 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_13545 e16c9f6ca7c6f9982a47e412049fbca1 257 Pfam PF01614 Bacterial transcriptional regulator 128 246 9.1E-13 T 13-10-2018 IPR014757 Transcription regulator IclR, C-terminal CDG55_13545 e16c9f6ca7c6f9982a47e412049fbca1 257 Gene3D G3DSA:1.10.10.10 2 77 3.3E-12 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_13545 e16c9f6ca7c6f9982a47e412049fbca1 257 SUPERFAMILY SSF55781 80 247 1.05E-25 T 13-10-2018 CDG55_13545 e16c9f6ca7c6f9982a47e412049fbca1 257 SMART SM00346 3 94 0.0036 T 13-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 CDG55_08110 98fa0adffe4eff3165daf107d84ed0a2 209 Pfam PF07963 Prokaryotic N-terminal methylation motif 1 25 2.8E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_08110 98fa0adffe4eff3165daf107d84ed0a2 209 Gene3D G3DSA:3.10.610.10 36 141 2.1E-5 T 13-10-2018 CDG55_08110 98fa0adffe4eff3165daf107d84ed0a2 209 SUPERFAMILY SSF54523 38 197 5.76E-20 T 13-10-2018 CDG55_08110 98fa0adffe4eff3165daf107d84ed0a2 209 Pfam PF11612 Type II secretion system (T2SS), protein J 59 188 2.2E-14 T 13-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 CDG55_08110 98fa0adffe4eff3165daf107d84ed0a2 209 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 25 9.0E-9 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_08110 98fa0adffe4eff3165daf107d84ed0a2 209 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 5 185 2.6E-19 T 13-10-2018 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 CDG55_02905 4043ff10c5cfa25691d8ddc3424635fa 131 Pfam PF14552 Tautomerase enzyme 38 115 9.4E-15 T 13-10-2018 IPR037479 Tautomerase, MSAD family CDG55_02905 4043ff10c5cfa25691d8ddc3424635fa 131 SUPERFAMILY SSF55331 2 120 1.07E-26 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily CDG55_02905 4043ff10c5cfa25691d8ddc3424635fa 131 Gene3D G3DSA:3.30.429.10 3 131 3.5E-37 T 13-10-2018 IPR014347 Tautomerase/MIF superfamily CDG55_09285 6abef35daf1421dbbb7cb9e787535275 339 Pfam PF16884 N-terminal domain of oxidoreductase 8 112 6.6E-41 T 13-10-2018 CDG55_09285 6abef35daf1421dbbb7cb9e787535275 339 SUPERFAMILY SSF50129 4 144 4.49E-42 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_09285 6abef35daf1421dbbb7cb9e787535275 339 Gene3D G3DSA:3.90.180.10 17 337 1.5E-131 T 13-10-2018 CDG55_09285 6abef35daf1421dbbb7cb9e787535275 339 SMART SM00829 20 337 0.0026 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDG55_09285 6abef35daf1421dbbb7cb9e787535275 339 Gene3D G3DSA:3.40.50.720 128 309 1.5E-131 T 13-10-2018 CDG55_09285 6abef35daf1421dbbb7cb9e787535275 339 Pfam PF00107 Zinc-binding dehydrogenase 159 297 1.7E-19 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDG55_09285 6abef35daf1421dbbb7cb9e787535275 339 SUPERFAMILY SSF51735 124 305 6.57E-46 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_12770 16b86b6865a0832fe73bcef69db74907 81 SMART SM00360 2 75 5.3E-26 T 13-10-2018 IPR000504 RNA recognition motif domain GO:0003676 CDG55_12770 16b86b6865a0832fe73bcef69db74907 81 SUPERFAMILY SSF54928 2 80 5.24E-26 T 13-10-2018 IPR035979 RNA-binding domain superfamily GO:0003676 CDG55_12770 16b86b6865a0832fe73bcef69db74907 81 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 70 2.5E-22 T 13-10-2018 IPR000504 RNA recognition motif domain GO:0003676 CDG55_12770 16b86b6865a0832fe73bcef69db74907 81 Gene3D G3DSA:3.30.70.330 1 81 4.1E-25 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CDG55_14220 eda552c6da0bd26bbdf772f3a9dcd401 376 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 84 294 2.3E-71 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 CDG55_14220 eda552c6da0bd26bbdf772f3a9dcd401 376 Pfam PF02481 DNA recombination-mediator protein A 87 285 4.2E-73 T 13-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 CDG55_14220 eda552c6da0bd26bbdf772f3a9dcd401 376 SUPERFAMILY SSF102405 89 294 1.98E-43 T 13-10-2018 CDG55_14220 eda552c6da0bd26bbdf772f3a9dcd401 376 Gene3D G3DSA:3.40.50.450 7 296 7.8E-90 T 13-10-2018 CDG55_07570 869961d961dad500b82e6cf5f38f0b55 567 Pfam PF14339 Domain of unknown function (DUF4394) 311 530 3.2E-64 T 13-10-2018 IPR025507 Domain of unknown function DUF4394 CDG55_07570 869961d961dad500b82e6cf5f38f0b55 567 Pfam PF14339 Domain of unknown function (DUF4394) 50 278 1.1E-58 T 13-10-2018 IPR025507 Domain of unknown function DUF4394 CDG55_07570 869961d961dad500b82e6cf5f38f0b55 567 SUPERFAMILY SSF82171 70 542 3.18E-7 T 13-10-2018 CDG55_04495 8b6734fdfeef1c8ceaf07fe681278115 178 Gene3D G3DSA:1.20.120.20 3 153 1.9E-11 T 13-10-2018 CDG55_04495 8b6734fdfeef1c8ceaf07fe681278115 178 SUPERFAMILY SSF58113 17 168 4.32E-9 T 13-10-2018 CDG55_11850 493c2eb27457cf71cfbb68d0ba2dfab1 120 Gene3D G3DSA:3.10.450.160 55 119 2.0E-14 T 13-10-2018 CDG55_11850 493c2eb27457cf71cfbb68d0ba2dfab1 120 Pfam PF11776 Nickel/cobalt transporter regulator 69 112 1.9E-17 T 13-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB CDG55_11850 493c2eb27457cf71cfbb68d0ba2dfab1 120 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 65 110 3.0E-11 T 13-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB CDG55_09295 13b68d89a952224e65c1c9692b52d875 225 SUPERFAMILY SSF52317 1 224 6.94E-77 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_09295 13b68d89a952224e65c1c9692b52d875 225 Pfam PF01965 DJ-1/PfpI family 25 221 8.5E-16 T 13-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 CDG55_09295 13b68d89a952224e65c1c9692b52d875 225 Gene3D G3DSA:3.40.50.880 1 224 3.9E-82 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 SUPERFAMILY SSF51246 299 362 4.79E-16 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 Pfam PF02222 ATP-grasp domain 106 275 4.6E-55 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 350 1.7E-110 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 4 347 38.341 T 13-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 Gene3D G3DSA:3.30.470.20 177 364 7.9E-67 T 13-10-2018 CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 Gene3D G3DSA:3.40.50.20 1 101 2.3E-26 T 13-10-2018 CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 Gene3D G3DSA:3.30.1490.20 102 176 1.4E-27 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 SUPERFAMILY SSF52440 3 96 4.89E-16 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_15050 cfd8a7da7bd1b9b26f0a90f25ef0caca 373 SUPERFAMILY SSF56059 97 295 1.63E-62 T 13-10-2018 CDG55_09255 569adaf68d2883922834ee6bcdcf4cd2 126 SMART SM00905 4 115 1.1E-36 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDG55_09255 569adaf68d2883922834ee6bcdcf4cd2 126 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 114 5.3E-25 T 13-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDG55_09255 569adaf68d2883922834ee6bcdcf4cd2 126 Gene3D G3DSA:3.30.1130.10 1 118 1.1E-31 T 13-10-2018 CDG55_09255 569adaf68d2883922834ee6bcdcf4cd2 126 TIGRFAM TIGR00526 folB_dom: FolB domain 1 119 9.3E-28 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDG55_09255 569adaf68d2883922834ee6bcdcf4cd2 126 SUPERFAMILY SSF55620 1 117 6.67E-30 T 13-10-2018 CDG55_09255 569adaf68d2883922834ee6bcdcf4cd2 126 Pfam PF02152 Dihydroneopterin aldolase 4 113 9.8E-28 T 13-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 CDG55_11080 a69082060fc7e7ed0d9e91ef2580db34 116 Gene3D G3DSA:3.30.110.70 3 105 1.3E-30 T 13-10-2018 CDG55_11080 a69082060fc7e7ed0d9e91ef2580db34 116 SUPERFAMILY SSF117782 1 105 1.44E-36 T 13-10-2018 IPR035439 UPF0145 domain superfamily CDG55_11080 a69082060fc7e7ed0d9e91ef2580db34 116 Pfam PF01906 Putative heavy-metal-binding 1 103 3.4E-37 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CDG55_11080 a69082060fc7e7ed0d9e91ef2580db34 116 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 103 25.238 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CDG55_04335 792ad23b63df067026da2a2cc43ed2cd 169 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 25 168 1.6E-46 T 13-10-2018 CDG55_04335 792ad23b63df067026da2a2cc43ed2cd 169 PIRSF PIRSF000216 5 169 6.3E-49 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04335 792ad23b63df067026da2a2cc43ed2cd 169 Gene3D G3DSA:1.10.10.1590 16 85 2.7E-15 T 13-10-2018 CDG55_04335 792ad23b63df067026da2a2cc43ed2cd 169 SUPERFAMILY SSF52833 18 168 4.36E-47 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_04335 792ad23b63df067026da2a2cc43ed2cd 169 Gene3D G3DSA:3.40.30.10 86 168 2.3E-23 T 13-10-2018 CDG55_04335 792ad23b63df067026da2a2cc43ed2cd 169 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 25 168 1.6E-46 T 13-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_14230 fd960c4a821bcf0e62a6ec96dfaa63d5 302 Pfam PF00892 EamA-like transporter family 10 144 2.6E-25 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_14230 fd960c4a821bcf0e62a6ec96dfaa63d5 302 Pfam PF00892 EamA-like transporter family 158 289 2.7E-19 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_14230 fd960c4a821bcf0e62a6ec96dfaa63d5 302 SUPERFAMILY SSF103481 44 148 3.27E-15 T 13-10-2018 CDG55_14230 fd960c4a821bcf0e62a6ec96dfaa63d5 302 SUPERFAMILY SSF103481 194 292 1.44E-12 T 13-10-2018 CDG55_07260 632d45568a7a3764b51c8a84ef8f896f 140 Gene3D G3DSA:3.10.129.10 4 138 5.1E-46 T 13-10-2018 CDG55_07260 632d45568a7a3764b51c8a84ef8f896f 140 Pfam PF03061 Thioesterase superfamily 48 123 1.9E-8 T 13-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 CDG55_07260 632d45568a7a3764b51c8a84ef8f896f 140 SUPERFAMILY SSF54637 12 138 4.45E-22 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_09455 d9d756c8612633faf9f99b9090d3768c 396 Gene3D G3DSA:2.40.50.100 84 225 1.3E-62 T 13-10-2018 CDG55_09455 d9d756c8612633faf9f99b9090d3768c 396 Gene3D G3DSA:1.10.287.470 123 191 1.3E-62 T 13-10-2018 CDG55_09455 d9d756c8612633faf9f99b9090d3768c 396 Gene3D G3DSA:2.40.420.20 59 352 1.3E-62 T 13-10-2018 CDG55_09455 d9d756c8612633faf9f99b9090d3768c 396 Gene3D G3DSA:2.40.30.170 70 304 1.3E-62 T 13-10-2018 CDG55_09455 d9d756c8612633faf9f99b9090d3768c 396 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 59 377 9.9E-62 T 13-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 CDG55_09455 d9d756c8612633faf9f99b9090d3768c 396 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 74 298 1.7E-21 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDG55_09455 d9d756c8612633faf9f99b9090d3768c 396 SUPERFAMILY SSF111369 74 299 7.06E-25 T 13-10-2018 CDG55_00115 da19b3257138eb90488e30f9756736a8 316 SUPERFAMILY SSF46785 4 127 4.99E-31 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00115 da19b3257138eb90488e30f9756736a8 316 Pfam PF01051 Initiator Replication protein 2 225 2.2E-53 T 13-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 CDG55_00115 da19b3257138eb90488e30f9756736a8 316 Gene3D G3DSA:1.10.10.10 141 234 3.7E-30 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_00115 da19b3257138eb90488e30f9756736a8 316 SUPERFAMILY SSF46785 128 229 3.48E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00115 da19b3257138eb90488e30f9756736a8 316 Gene3D G3DSA:1.10.10.10 1 140 1.7E-42 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_05410 9d04c4607a0381734541caf643895267 609 SUPERFAMILY SSF68923 4 240 4.71E-98 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CDG55_05410 9d04c4607a0381734541caf643895267 609 Gene3D G3DSA:2.170.8.10 53 394 2.3E-261 T 13-10-2018 CDG55_05410 9d04c4607a0381734541caf643895267 609 Gene3D G3DSA:3.40.449.10 17 240 2.3E-261 T 13-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CDG55_05410 9d04c4607a0381734541caf643895267 609 Gene3D G3DSA:3.90.228.20 241 601 2.3E-261 T 13-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 CDG55_05410 9d04c4607a0381734541caf643895267 609 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 6 607 50.764 T 13-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 CDG55_05410 9d04c4607a0381734541caf643895267 609 SUPERFAMILY SSF53795 241 604 1.58E-155 T 13-10-2018 CDG55_05410 9d04c4607a0381734541caf643895267 609 PIRSF PIRSF001348 1 609 1.3E-271 T 13-10-2018 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 CDG55_05410 9d04c4607a0381734541caf643895267 609 Pfam PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain 18 237 7.3E-101 T 13-10-2018 IPR035078 Phosphoenolpyruvate carboxykinase, GTP-utilising, N-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 CDG55_05410 9d04c4607a0381734541caf643895267 609 Pfam PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain 241 602 2.4E-168 T 13-10-2018 IPR035077 Phosphoenolpyruvate carboxykinase, GTP-utilising, C-terminal GO:0004611|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: R-HSA-70263 CDG55_00035 d71cf50cd4482dbb801de5b4ffe04565 191 Pfam PF11726 Inovirus Gp2 38 188 6.8E-6 T 13-10-2018 CDG55_02695 addcacd0c5ad9f141e9475cb7a238de0 170 Pfam PF07963 Prokaryotic N-terminal methylation motif 9 32 2.6E-5 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02695 addcacd0c5ad9f141e9475cb7a238de0 170 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 11 32 4.3E-4 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_02695 addcacd0c5ad9f141e9475cb7a238de0 170 TIGRFAM TIGR02523 type_IV_pilV: type IV pilus modification protein PilV 11 100 6.6E-16 T 13-10-2018 IPR013362 Pilus modification type IV, PilV CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 SUPERFAMILY SSF51569 6 335 5.74E-135 T 13-10-2018 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 Gene3D G3DSA:3.20.20.70 2 337 2.6E-143 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 161 180 6.6E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 130 144 6.6E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 6.6E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 199 218 6.6E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 253 269 6.6E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 278 293 6.6E-56 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 PIRSF PIRSF001415 2 336 1.9E-141 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 SMART SM01004 10 333 1.5E-225 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_05220 506964d7d5227f98e1545e6a668ad2c2 337 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 331 1.3E-133 T 13-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 CDG55_12475 c6562ee17b7de1307c233862fff65509 304 Gene3D G3DSA:3.90.640.20 194 289 5.3E-26 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily CDG55_12475 c6562ee17b7de1307c233862fff65509 304 Pfam PF11738 Protein of unknown function (DUF3298) 197 273 1.1E-8 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 CDG55_12475 c6562ee17b7de1307c233862fff65509 304 Gene3D G3DSA:3.30.565.40 40 192 8.6E-29 T 13-10-2018 CDG55_01755 22ee40c2b0db4d961dca884a334df38c 411 SUPERFAMILY SSF53335 6 396 3.93E-70 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_01755 22ee40c2b0db4d961dca884a334df38c 411 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 3 19 4.5E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CDG55_01755 22ee40c2b0db4d961dca884a334df38c 411 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 146 160 4.5E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CDG55_01755 22ee40c2b0db4d961dca884a334df38c 411 PRINTS PR00105 Cytosine-specific DNA methyltransferase signature 192 205 4.5E-14 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CDG55_01755 22ee40c2b0db4d961dca884a334df38c 411 Gene3D G3DSA:3.40.50.150 1 278 1.0E-61 T 13-10-2018 CDG55_01755 22ee40c2b0db4d961dca884a334df38c 411 Gene3D G3DSA:3.90.120.10 302 382 1.7E-9 T 13-10-2018 CDG55_01755 22ee40c2b0db4d961dca884a334df38c 411 TIGRFAM TIGR00675 dcm: DNA (cytosine-5-)-methyltransferase 55 392 5.0E-75 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CDG55_01755 22ee40c2b0db4d961dca884a334df38c 411 Pfam PF00145 C-5 cytosine-specific DNA methylase 59 394 2.2E-73 T 13-10-2018 IPR001525 C-5 cytosine methyltransferase GO:0008168 KEGG: 00270+2.1.1.37 CDG55_02850 e8de80fbf3a81be427d32411dd0b271a 155 Pfam PF10107 Endonuclease related to archaeal Holliday junction resolvase 35 150 9.1E-26 T 13-10-2018 IPR019287 Holliday junction resolvase-related domain CDG55_06295 0bca03473d04100ad770ed1970a11fc8 182 Gene3D G3DSA:2.60.450.10 34 175 1.7E-41 T 13-10-2018 CDG55_06295 0bca03473d04100ad770ed1970a11fc8 182 Pfam PF03968 OstA-like protein 44 153 1.1E-27 T 13-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal CDG55_06295 0bca03473d04100ad770ed1970a11fc8 182 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 32 171 2.9E-40 T 13-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 CDG55_06295 0bca03473d04100ad770ed1970a11fc8 182 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 12 172 23.096 T 13-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 CDG55_06150 fd0d40e1265da5d22cfadc4baba680c9 312 TIGRFAM TIGR00688 rarD: protein RarD 3 255 1.8E-50 T 13-10-2018 IPR004626 RarD protein GO:0005887 CDG55_06150 fd0d40e1265da5d22cfadc4baba680c9 312 Pfam PF00892 EamA-like transporter family 3 139 3.3E-7 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_06150 fd0d40e1265da5d22cfadc4baba680c9 312 SUPERFAMILY SSF103481 36 140 4.05E-7 T 13-10-2018 CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 Gene3D G3DSA:2.160.10.10 225 453 1.5E-69 T 13-10-2018 CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 SUPERFAMILY SSF53448 1 249 6.68E-63 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 348 1.4E-6 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 263 296 1.5E-6 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 1.5E-4 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 451 9.4E-194 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.352 T 13-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 Gene3D G3DSA:3.90.550.10 1 224 3.1E-64 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 SUPERFAMILY SSF51161 251 435 1.01E-48 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_01485 edec56a352190ee52f82ac1bbb4fb550 454 Pfam PF12804 MobA-like NTP transferase domain 5 128 8.1E-21 T 13-10-2018 IPR025877 MobA-like NTP transferase CDG55_11250 a600e9ddf2664cb806d34566305e4436 234 SMART SM00448 9 119 9.1E-37 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_11250 a600e9ddf2664cb806d34566305e4436 234 Gene3D G3DSA:1.10.10.10 135 234 2.7E-26 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_11250 a600e9ddf2664cb806d34566305e4436 234 SUPERFAMILY SSF52172 9 188 4.98E-40 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_11250 a600e9ddf2664cb806d34566305e4436 234 Gene3D G3DSA:3.40.50.2300 2 134 5.1E-36 T 13-10-2018 CDG55_11250 a600e9ddf2664cb806d34566305e4436 234 SMART SM00862 154 230 7.4E-19 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_11250 a600e9ddf2664cb806d34566305e4436 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 229 4.8E-20 T 13-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 CDG55_11250 a600e9ddf2664cb806d34566305e4436 234 Pfam PF00072 Response regulator receiver domain 11 120 1.4E-28 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_09050 a2573336f03a9982dbb975927d692de0 173 Pfam PF02391 MoaE protein 7 119 2.2E-33 T 13-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 CDG55_09050 a2573336f03a9982dbb975927d692de0 173 SUPERFAMILY SSF54690 7 139 6.54E-41 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 CDG55_09050 a2573336f03a9982dbb975927d692de0 173 Gene3D G3DSA:3.90.1170.40 3 148 1.6E-43 T 13-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 CDG55_04735 8f49ef227535dbf12db19be86394642d 244 SUPERFAMILY SSF51735 5 243 6.38E-84 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_04735 8f49ef227535dbf12db19be86394642d 244 Gene3D G3DSA:3.40.50.720 1 244 3.9E-82 T 13-10-2018 CDG55_04735 8f49ef227535dbf12db19be86394642d 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 1.5E-95 T 13-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 CDG55_04735 8f49ef227535dbf12db19be86394642d 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 2.1E-66 T 13-10-2018 CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 1.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 1.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 1.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 1.8E-45 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 2.9E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.9E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.9E-14 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_04735 8f49ef227535dbf12db19be86394642d 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 2.2E-5 T 13-10-2018 CDG55_10795 930a0664c391f9bcb48cb36274788cc4 216 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 19 212 30.828 T 13-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 CDG55_10795 930a0664c391f9bcb48cb36274788cc4 216 Gene3D G3DSA:3.40.50.150 31 215 7.6E-60 T 13-10-2018 CDG55_10795 930a0664c391f9bcb48cb36274788cc4 216 SUPERFAMILY SSF53335 34 212 8.36E-40 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_10795 930a0664c391f9bcb48cb36274788cc4 216 Pfam PF01728 FtsJ-like methyltransferase 35 210 1.6E-57 T 13-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 CDG55_10795 930a0664c391f9bcb48cb36274788cc4 216 PIRSF PIRSF005461 3 216 2.4E-80 T 13-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 CDG55_14595 1b07ec493f21ca9359b4b53829fdff5d 726 SUPERFAMILY SSF56349 523 681 4.71E-5 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_06760 6f72e33f62a997edceee1b721df0b1ed 423 Gene3D G3DSA:1.10.150.130 117 197 7.6E-29 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_06760 6f72e33f62a997edceee1b721df0b1ed 423 SUPERFAMILY SSF56349 114 413 3.06E-48 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_06760 6f72e33f62a997edceee1b721df0b1ed 423 Gene3D G3DSA:1.10.443.10 228 415 7.7E-18 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_06760 6f72e33f62a997edceee1b721df0b1ed 423 Pfam PF00589 Phage integrase family 231 400 6.6E-16 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_06760 6f72e33f62a997edceee1b721df0b1ed 423 Pfam PF13356 Arm DNA-binding domain 11 100 1.6E-15 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CDG55_06760 6f72e33f62a997edceee1b721df0b1ed 423 Gene3D G3DSA:3.30.160.390 7 116 1.3E-14 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CDG55_01730 c52d26401b322b362a87adc4921dd8c4 116 Gene3D G3DSA:3.40.30.10 1 115 1.8E-40 T 13-10-2018 CDG55_01730 c52d26401b322b362a87adc4921dd8c4 116 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 114 1.8E-27 T 13-10-2018 IPR006504 Transcriptional regulator Spx/MgsR CDG55_01730 c52d26401b322b362a87adc4921dd8c4 116 SUPERFAMILY SSF52833 1 113 4.23E-31 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_01730 c52d26401b322b362a87adc4921dd8c4 116 Pfam PF03960 ArsC family 5 112 3.0E-15 T 13-10-2018 IPR006660 Arsenate reductase-like CDG55_01715 b12b1f4af3dc371982d9b70aa4ac3ed0 394 SUPERFAMILY SSF55073 239 392 7.77E-47 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_01715 b12b1f4af3dc371982d9b70aa4ac3ed0 394 Pfam PF00990 Diguanylate cyclase, GGDEF domain 235 388 1.7E-49 T 13-10-2018 IPR000160 GGDEF domain CDG55_01715 b12b1f4af3dc371982d9b70aa4ac3ed0 394 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 232 390 2.1E-49 T 13-10-2018 IPR000160 GGDEF domain CDG55_01715 b12b1f4af3dc371982d9b70aa4ac3ed0 394 Gene3D G3DSA:3.30.70.270 221 393 1.6E-55 T 13-10-2018 CDG55_01715 b12b1f4af3dc371982d9b70aa4ac3ed0 394 SMART SM00267 223 392 4.6E-57 T 13-10-2018 IPR000160 GGDEF domain CDG55_00055 c509308fd50fad96a99eb66085f882fd 311 SUPERFAMILY SSF46785 130 231 8.71E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00055 c509308fd50fad96a99eb66085f882fd 311 SUPERFAMILY SSF46785 5 130 3.47E-32 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_00055 c509308fd50fad96a99eb66085f882fd 311 Pfam PF01051 Initiator Replication protein 4 228 7.0E-56 T 13-10-2018 IPR000525 Initiator Rep protein GO:0003887|GO:0005727|GO:0006270 CDG55_00055 c509308fd50fad96a99eb66085f882fd 311 Gene3D G3DSA:1.10.10.10 1 143 7.2E-41 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_00055 c509308fd50fad96a99eb66085f882fd 311 Gene3D G3DSA:1.10.10.10 144 236 2.3E-27 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04435 bd2e78df6358957dc39cc69fedb5fa47 1370 SUPERFAMILY SSF141072 260 392 4.58E-10 T 13-10-2018 IPR038081 CalX-like domain superfamily CDG55_04435 bd2e78df6358957dc39cc69fedb5fa47 1370 Gene3D G3DSA:2.60.40.2030 260 391 2.2E-8 T 13-10-2018 IPR038081 CalX-like domain superfamily CDG55_04435 bd2e78df6358957dc39cc69fedb5fa47 1370 Gene3D G3DSA:2.60.40.10 997 1136 3.6E-5 T 13-10-2018 IPR013783 Immunoglobulin-like fold CDG55_04435 bd2e78df6358957dc39cc69fedb5fa47 1370 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 414 456 8.0E-5 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_04435 bd2e78df6358957dc39cc69fedb5fa47 1370 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1294 1329 7.9E-5 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_05995 0b43c82b416ddcc2448955011f7c7fd6 400 Gene3D G3DSA:1.10.101.10 126 188 3.7E-10 T 13-10-2018 IPR036366 PGBD superfamily Reactome: R-HSA-1442490|Reactome: R-HSA-1474228 CDG55_05995 0b43c82b416ddcc2448955011f7c7fd6 400 Gene3D G3DSA:2.40.440.10 209 400 2.2E-42 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CDG55_05995 0b43c82b416ddcc2448955011f7c7fd6 400 SUPERFAMILY SSF47090 130 178 4.4E-11 T 13-10-2018 IPR036365 PGBD-like superfamily CDG55_05995 0b43c82b416ddcc2448955011f7c7fd6 400 Pfam PF01471 Putative peptidoglycan binding domain 132 177 2.8E-10 T 13-10-2018 IPR002477 Peptidoglycan binding-like CDG55_05995 0b43c82b416ddcc2448955011f7c7fd6 400 Pfam PF03734 L,D-transpeptidase catalytic domain 268 393 1.3E-17 T 13-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 CDG55_05995 0b43c82b416ddcc2448955011f7c7fd6 400 SUPERFAMILY SSF141523 268 396 2.75E-27 T 13-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like CDG55_05945 4ceade810d7ec61e1e80a7922c8554b6 616 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 102 513 1.4E-61 T 13-10-2018 IPR000914 Solute-binding protein family 5 domain CDG55_05945 4ceade810d7ec61e1e80a7922c8554b6 616 PIRSF PIRSF002741 8 602 1.6E-89 T 13-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 CDG55_05945 4ceade810d7ec61e1e80a7922c8554b6 616 SUPERFAMILY SSF53850 53 600 3.26E-98 T 13-10-2018 CDG55_05945 4ceade810d7ec61e1e80a7922c8554b6 616 Gene3D G3DSA:3.40.190.10 33 597 4.6E-212 T 13-10-2018 CDG55_05945 4ceade810d7ec61e1e80a7922c8554b6 616 Gene3D G3DSA:3.10.105.10 316 577 4.6E-212 T 13-10-2018 CDG55_10310 c64a14e2f0cb4d59ad26000cbcc7a0db 129 Pfam PF11304 Protein of unknown function (DUF3106) 39 89 4.2E-8 T 13-10-2018 IPR021455 Protein of unknown function DUF3106 CDG55_02160 eb85dc85c2fa0eb31cd5273ee65fa648 150 Pfam PF08937 MTH538 TIR-like domain (DUF1863) 4 117 5.0E-21 T 13-10-2018 IPR015032 MTH538 TIR-like domain CDG55_02160 eb85dc85c2fa0eb31cd5273ee65fa648 150 SUPERFAMILY SSF52206 5 132 8.24E-21 T 13-10-2018 IPR036490 Hypothetical protein MTH538 superfamily CDG55_02160 eb85dc85c2fa0eb31cd5273ee65fa648 150 Gene3D G3DSA:3.40.50.9200 25 135 3.6E-10 T 13-10-2018 IPR036490 Hypothetical protein MTH538 superfamily CDG55_05805 0185d080f6d9c3a4cdd7d5d5b4c3b586 253 Gene3D G3DSA:2.40.128.270 31 146 7.6E-15 T 13-10-2018 IPR038670 HslJ-like superfamily CDG55_05805 0185d080f6d9c3a4cdd7d5d5b4c3b586 253 Pfam PF14302 Domain of unknown function (DUF4377) 163 247 1.3E-21 T 13-10-2018 IPR025485 Domain of unknown function DUF4377 CDG55_05805 0185d080f6d9c3a4cdd7d5d5b4c3b586 253 Pfam PF03724 META domain 45 139 1.2E-17 T 13-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ CDG55_13910 4652dc05bc6614ed028660a1c7d5f2c0 391 SUPERFAMILY SSF52096 47 373 1.01E-61 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_13910 4652dc05bc6614ed028660a1c7d5f2c0 391 SMART SM00245 181 368 1.4E-46 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CDG55_13910 4652dc05bc6614ed028660a1c7d5f2c0 391 SUPERFAMILY SSF50156 119 185 4.0E-7 T 13-10-2018 IPR036034 PDZ superfamily GO:0005515 CDG55_13910 4652dc05bc6614ed028660a1c7d5f2c0 391 Pfam PF03572 Peptidase family S41 206 364 1.1E-45 T 13-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 CDG55_13910 4652dc05bc6614ed028660a1c7d5f2c0 391 Gene3D G3DSA:2.30.42.10 109 194 9.6E-69 T 13-10-2018 CDG55_13910 4652dc05bc6614ed028660a1c7d5f2c0 391 Gene3D G3DSA:3.30.750.44 60 343 9.6E-69 T 13-10-2018 CDG55_13910 4652dc05bc6614ed028660a1c7d5f2c0 391 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 61 367 3.8E-68 T 13-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 CDG55_13910 4652dc05bc6614ed028660a1c7d5f2c0 391 Gene3D G3DSA:3.90.226.10 195 364 9.6E-69 T 13-10-2018 CDG55_12490 ecad45cdc0ba35cfad9330267375651c 334 Gene3D G3DSA:1.10.3290.10 12 263 8.8E-57 T 13-10-2018 IPR036597 Fido-like domain superfamily CDG55_12490 ecad45cdc0ba35cfad9330267375651c 334 Pfam PF02661 Fic/DOC family 101 196 3.1E-23 T 13-10-2018 IPR003812 Fido domain CDG55_12490 ecad45cdc0ba35cfad9330267375651c 334 SUPERFAMILY SSF140931 78 255 2.49E-44 T 13-10-2018 IPR036597 Fido-like domain superfamily CDG55_01990 cdf2ad07e62cace2bcc4b2a391b80f93 360 Pfam PF04332 Protein of unknown function (DUF475) 53 355 3.4E-114 T 13-10-2018 IPR007427 Protein of unknown function DUF475 CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 181 6.9E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 183 200 6.9E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 90 101 6.9E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 16 33 6.9E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 137 153 6.9E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 6.9E-29 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 SUPERFAMILY SSF51735 14 255 1.17E-73 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 254 5.2E-55 T 13-10-2018 CDG55_12205 06bd5890c379e49cc2f7766534e90590 306 Gene3D G3DSA:3.40.50.720 2 293 1.0E-79 T 13-10-2018 CDG55_13565 2c5b49df677303bf8ea508ff50894482 306 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 70 223 6.7E-47 T 13-10-2018 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 CDG55_13565 2c5b49df677303bf8ea508ff50894482 306 SUPERFAMILY SSF51197 100 229 2.33E-17 T 13-10-2018 CDG55_13565 2c5b49df677303bf8ea508ff50894482 306 Gene3D G3DSA:2.60.120.330 44 229 2.5E-42 T 13-10-2018 IPR027443 Isopenicillin N synthase-like CDG55_06285 26cd6118d05cb0b0357ce8f835dc57cb 179 SUPERFAMILY SSF56784 10 170 1.17E-39 T 13-10-2018 IPR036412 HAD-like superfamily CDG55_06285 26cd6118d05cb0b0357ce8f835dc57cb 179 PIRSF PIRSF006118 1 175 5.0E-60 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDG55_06285 26cd6118d05cb0b0357ce8f835dc57cb 179 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 15 127 2.0E-12 T 13-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 CDG55_06285 26cd6118d05cb0b0357ce8f835dc57cb 179 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 14 164 1.8E-46 T 13-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDG55_06285 26cd6118d05cb0b0357ce8f835dc57cb 179 Pfam PF08282 haloacid dehalogenase-like hydrolase 87 145 2.9E-9 T 13-10-2018 CDG55_06285 26cd6118d05cb0b0357ce8f835dc57cb 179 Gene3D G3DSA:3.40.50.1000 2 176 1.3E-50 T 13-10-2018 IPR023214 HAD superfamily CDG55_01570 c384ca6f5d038c2f15415ba0447c4c63 154 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 31 153 1.6E-10 T 13-10-2018 IPR019223 Domain of unknown function DUF2147 CDG55_09810 c2aae37fc2472621a92bfdb86b11dbe3 188 Pfam PF01351 Ribonuclease HII 4 181 1.3E-40 T 13-10-2018 IPR024567 Ribonuclease HII/HIII domain CDG55_09810 c2aae37fc2472621a92bfdb86b11dbe3 188 Gene3D G3DSA:3.30.420.10 1 187 7.6E-77 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_09810 c2aae37fc2472621a92bfdb86b11dbe3 188 SUPERFAMILY SSF53098 2 187 5.46E-68 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_09810 c2aae37fc2472621a92bfdb86b11dbe3 188 Hamap MF_00052_B Ribonuclease HII [rnhB]. 2 182 37.207 T 13-10-2018 IPR022898 Ribonuclease HII GO:0004523 CDG55_09055 5b0ffd4aaa694952e102cfae8fc39069 83 Gene3D G3DSA:3.10.20.30 6 83 3.1E-9 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_09055 5b0ffd4aaa694952e102cfae8fc39069 83 Pfam PF02597 ThiS family 12 83 2.7E-8 T 13-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 CDG55_09055 5b0ffd4aaa694952e102cfae8fc39069 83 SUPERFAMILY SSF54285 6 83 1.07E-8 T 13-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CDG55_10975 bb738c6917fe9e95f8358ef93a4c0656 217 Pfam PF03099 Biotin/lipoate A/B protein ligase family 65 162 4.0E-8 T 13-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 CDG55_10975 bb738c6917fe9e95f8358ef93a4c0656 217 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 78 131 2.0E-21 T 13-10-2018 CDG55_10975 bb738c6917fe9e95f8358ef93a4c0656 217 Hamap MF_00013 Octanoyltransferase [lipB]. 7 210 33.276 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDG55_10975 bb738c6917fe9e95f8358ef93a4c0656 217 SUPERFAMILY SSF55681 11 205 2.07E-61 T 13-10-2018 CDG55_10975 bb738c6917fe9e95f8358ef93a4c0656 217 Gene3D G3DSA:3.30.930.10 7 206 2.0E-55 T 13-10-2018 CDG55_10975 bb738c6917fe9e95f8358ef93a4c0656 217 PIRSF PIRSF016262 4 211 1.2E-57 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDG55_10975 bb738c6917fe9e95f8358ef93a4c0656 217 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 30 191 5.0E-57 T 13-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 SUPERFAMILY SSF52980 1615 1711 1.72E-8 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 Pfam PF13086 AAA domain 660 822 3.1E-7 T 13-10-2018 CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 Gene3D G3DSA:3.40.50.300 1092 1377 1.9E-17 T 13-10-2018 CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 Gene3D G3DSA:3.40.50.300 589 989 8.2E-19 T 13-10-2018 CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 Pfam PF13087 AAA domain 1375 1562 6.6E-17 T 13-10-2018 CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 SUPERFAMILY SSF52540 657 1586 2.2E-39 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 Gene3D G3DSA:3.40.50.300 1391 1580 1.5E-28 T 13-10-2018 CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 Pfam PF13195 Protein of unknown function (DUF4011) 379 546 3.4E-37 T 13-10-2018 IPR025103 Protein of unknown function DUF4011 CDG55_00215 ab8b52bc0fcb0f5c906f1d6fb1f77f7e 1718 Gene3D G3DSA:3.40.960.10 1603 1713 4.6E-6 T 13-10-2018 CDG55_07295 a1382120734ca1a13ff09a65b80792e9 672 Gene3D G3DSA:3.40.50.1820 377 644 3.7E-24 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_07295 a1382120734ca1a13ff09a65b80792e9 672 Pfam PF05057 Putative serine esterase (DUF676) 382 531 2.7E-4 T 13-10-2018 IPR007751 Domain of unknown function DUF676, lipase-like CDG55_07295 a1382120734ca1a13ff09a65b80792e9 672 SUPERFAMILY SSF53474 379 646 1.32E-20 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_07960 d536cecea9b0f640cd5aaadf2b582b53 416 SUPERFAMILY SSF50182 186 252 4.25E-12 T 13-10-2018 IPR010920 LSM domain superfamily CDG55_07960 d536cecea9b0f640cd5aaadf2b582b53 416 Pfam PF00924 Mechanosensitive ion channel 143 396 1.3E-49 T 13-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 CDG55_11810 620fddae45d4267272e393909060c29d 389 Pfam PF00487 Fatty acid desaturase 43 263 1.5E-20 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 CDG55_11810 620fddae45d4267272e393909060c29d 389 PIRSF PIRSF000345 1 329 3.7E-97 T 13-10-2018 IPR009160 Acyl-CoA desaturase, haem/steroid binding domain-containing GO:0004768|GO:0006636|GO:0016021 MetaCyc: PWY-5987|MetaCyc: PWY-5996 CDG55_11810 620fddae45d4267272e393909060c29d 389 PRINTS PR00075 Fatty acid desaturase family 1 signature 101 130 1.2E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_11810 620fddae45d4267272e393909060c29d 389 PRINTS PR00075 Fatty acid desaturase family 1 signature 190 211 1.2E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_11810 620fddae45d4267272e393909060c29d 389 PRINTS PR00075 Fatty acid desaturase family 1 signature 13 33 1.2E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_11810 620fddae45d4267272e393909060c29d 389 PRINTS PR00075 Fatty acid desaturase family 1 signature 233 247 1.2E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_11810 620fddae45d4267272e393909060c29d 389 PRINTS PR00075 Fatty acid desaturase family 1 signature 63 83 1.2E-30 T 13-10-2018 IPR015876 Acyl-CoA desaturase GO:0016717|GO:0055114 Reactome: R-HSA-75105 CDG55_10675 6471a4a2213cb6a522ce67e1340e15c5 128 Gene3D G3DSA:1.20.1290.10 3 127 1.8E-36 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDG55_10675 6471a4a2213cb6a522ce67e1340e15c5 128 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 2.9E-22 T 13-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 CDG55_10675 6471a4a2213cb6a522ce67e1340e15c5 128 SUPERFAMILY SSF69118 4 121 1.03E-33 T 13-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 CDG55_11075 5d6a85eb5a0889d5180e4131dd896407 486 Gene3D G3DSA:2.20.200.10 104 353 1.7E-135 T 13-10-2018 CDG55_11075 5d6a85eb5a0889d5180e4131dd896407 486 Gene3D G3DSA:1.20.1600.10 58 464 1.7E-135 T 13-10-2018 CDG55_11075 5d6a85eb5a0889d5180e4131dd896407 486 SUPERFAMILY SSF56954 10 465 1.57E-110 T 13-10-2018 CDG55_11075 5d6a85eb5a0889d5180e4131dd896407 486 Pfam PF02321 Outer membrane efflux protein 67 253 4.7E-32 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CDG55_11075 5d6a85eb5a0889d5180e4131dd896407 486 Pfam PF02321 Outer membrane efflux protein 282 462 1.8E-32 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CDG55_11075 5d6a85eb5a0889d5180e4131dd896407 486 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 17 464 1.9E-113 T 13-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 CDG55_08530 e4a39da15577c647b338299723c51b49 194 Gene3D G3DSA:3.40.470.10 5 193 4.8E-20 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDG55_08530 e4a39da15577c647b338299723c51b49 194 SUPERFAMILY SSF52141 8 189 1.83E-19 T 13-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 CDG55_09120 d11914a194517737076ea21171aa70dc 496 Pfam PF01425 Amidase 27 475 3.7E-78 T 13-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_09120 d11914a194517737076ea21171aa70dc 496 Gene3D G3DSA:3.90.1300.10 4 495 1.2E-149 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_09120 d11914a194517737076ea21171aa70dc 496 SUPERFAMILY SSF75304 2 484 6.41E-115 T 13-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 CDG55_06560 f73b633c01bada61db875dd82a0f5b88 724 SUPERFAMILY SSF103473 620 714 1.15E-5 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_06560 f73b633c01bada61db875dd82a0f5b88 724 Pfam PF07690 Major Facilitator Superfamily 25 411 1.7E-13 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_06560 f73b633c01bada61db875dd82a0f5b88 724 Gene3D G3DSA:1.20.1250.20 17 420 9.4E-10 T 13-10-2018 CDG55_06560 f73b633c01bada61db875dd82a0f5b88 724 SUPERFAMILY SSF103473 17 410 6.15E-22 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_11340 4f91b8c87150fb5207acf42b59f6ab34 608 Pfam PF13910 Domain of unknown function (DUF4209) 494 581 7.6E-14 T 13-10-2018 IPR025209 Domain of unknown function DUF4209 CDG55_08425 25e2a862f3955307e218bc929f970dce 130 SUPERFAMILY SSF54736 43 127 2.72E-31 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDG55_08425 25e2a862f3955307e218bc929f970dce 130 Gene3D G3DSA:3.30.1390.10 25 129 1.9E-40 T 13-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CDG55_08425 25e2a862f3955307e218bc929f970dce 130 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 25 123 27.869 T 13-10-2018 IPR022935 ATP-dependent Clp protease adaptor protein ClpS CDG55_08425 25e2a862f3955307e218bc929f970dce 130 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 45 123 4.4E-33 T 13-10-2018 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 CDG55_02285 bd52224a07cf9b8fa3a3ffc4f701a8fa 419 SUPERFAMILY SSF56935 26 419 2.01E-58 T 13-10-2018 CDG55_02285 bd52224a07cf9b8fa3a3ffc4f701a8fa 419 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 29 419 2.4E-37 T 13-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) CDG55_02285 bd52224a07cf9b8fa3a3ffc4f701a8fa 419 Gene3D G3DSA:2.40.160.60 24 419 9.1E-88 T 13-10-2018 CDG55_05655 e30542a72945f8cb43d5193a4f4a6784 163 Pfam PF00210 Ferritin-like domain 25 161 3.3E-22 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CDG55_05655 e30542a72945f8cb43d5193a4f4a6784 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 69 85 2.6E-11 T 13-10-2018 IPR002177 DNA-binding protein Dps CDG55_05655 e30542a72945f8cb43d5193a4f4a6784 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 138 156 2.6E-11 T 13-10-2018 IPR002177 DNA-binding protein Dps CDG55_05655 e30542a72945f8cb43d5193a4f4a6784 163 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 45 61 2.6E-11 T 13-10-2018 IPR002177 DNA-binding protein Dps CDG55_05655 e30542a72945f8cb43d5193a4f4a6784 163 Gene3D G3DSA:1.20.1260.10 1 161 1.3E-46 T 13-10-2018 IPR012347 Ferritin-like CDG55_05655 e30542a72945f8cb43d5193a4f4a6784 163 PIRSF PIRSF005900 2 163 4.3E-42 T 13-10-2018 IPR002177 DNA-binding protein Dps CDG55_05655 e30542a72945f8cb43d5193a4f4a6784 163 Hamap MF_01441 DNA protection during starvation protein [dps]. 1 161 45.707 T 13-10-2018 IPR023067 DNA protection during starvation protein, gammaproteobacteria GO:0016722|GO:0055114 CDG55_05655 e30542a72945f8cb43d5193a4f4a6784 163 SUPERFAMILY SSF47240 10 160 8.55E-48 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_07230 4566cfb7cfb695ae4039f542a7b76547 197 Pfam PF02674 Colicin V production protein 4 141 3.1E-28 T 13-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 CDG55_14470 1fc8fd1e6e06a2c96da8b16717762395 204 Gene3D G3DSA:3.30.70.2540 1 204 6.7E-58 T 13-10-2018 CDG55_14470 1fc8fd1e6e06a2c96da8b16717762395 204 Pfam PF09618 CRISPR-associated protein (Cas_Csy4) 4 204 1.5E-48 T 13-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 CDG55_14470 1fc8fd1e6e06a2c96da8b16717762395 204 TIGRFAM TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST 3 204 1.1E-37 T 13-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 10 108 1.6E-23 T 13-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 16 356 5.2E-117 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 Gene3D G3DSA:3.40.140.10 2 144 5.8E-50 T 13-10-2018 CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 Pfam PF01872 RibD C-terminal domain 156 355 4.0E-42 T 13-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 Gene3D G3DSA:3.40.430.10 145 366 7.3E-71 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 SUPERFAMILY SSF53927 12 153 2.17E-48 T 13-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 SUPERFAMILY SSF53597 154 357 6.6E-51 T 13-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 PIRSF PIRSF006769 7 364 1.7E-124 T 13-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 CDG55_13960 749e698477bc4963be257943c1c7e6e4 366 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 155 358 2.2E-49 T 13-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 CDG55_08115 605931e512cde579ef26b3fc7d7a73c3 318 SUPERFAMILY SSF158544 104 209 1.33E-29 T 13-10-2018 IPR038072 GspK, central domain superfamily CDG55_08115 605931e512cde579ef26b3fc7d7a73c3 318 Gene3D G3DSA:1.10.40.60 211 278 7.1E-69 T 13-10-2018 IPR038072 GspK, central domain superfamily CDG55_08115 605931e512cde579ef26b3fc7d7a73c3 318 Gene3D G3DSA:1.10.40.60 102 210 7.1E-69 T 13-10-2018 IPR038072 GspK, central domain superfamily CDG55_08115 605931e512cde579ef26b3fc7d7a73c3 318 Pfam PF03934 Type II secretion system (T2SS), protein K 32 310 9.5E-77 T 13-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 CDG55_08115 605931e512cde579ef26b3fc7d7a73c3 318 PIRSF PIRSF002786 2 317 7.9E-92 T 13-10-2018 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 CDG55_08115 605931e512cde579ef26b3fc7d7a73c3 318 Gene3D G3DSA:3.30.1300.30 45 303 7.1E-69 T 13-10-2018 CDG55_08115 605931e512cde579ef26b3fc7d7a73c3 318 SUPERFAMILY SSF54523 40 312 1.04E-21 T 13-10-2018 CDG55_00270 c50d8b05f8d4660047c55d16bb23c33d 177 Pfam PF06114 IrrE N-terminal-like domain 99 174 3.8E-15 T 13-10-2018 IPR010359 IrrE N-terminal-like domain CDG55_10500 de251d8000c9b549658e7e1a83db273d 542 Pfam PF01384 Phosphate transporter family 82 530 5.2E-84 T 13-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 CDG55_04010 06b6301ac24c82b0ee6f93f81feb232e 274 Pfam PF00795 Carbon-nitrogen hydrolase 4 255 7.3E-48 T 13-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 CDG55_04010 06b6301ac24c82b0ee6f93f81feb232e 274 SUPERFAMILY SSF56317 4 269 5.62E-66 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CDG55_04010 06b6301ac24c82b0ee6f93f81feb232e 274 Gene3D G3DSA:3.60.110.10 1 274 2.8E-79 T 13-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily CDG55_13445 6671f652fabb3ba1af6e4a4e28f354c3 333 Gene3D G3DSA:2.40.30.170 213 333 2.7E-23 T 13-10-2018 CDG55_13445 6671f652fabb3ba1af6e4a4e28f354c3 333 Gene3D G3DSA:1.10.287.470 86 109 2.1E-12 T 13-10-2018 CDG55_13445 6671f652fabb3ba1af6e4a4e28f354c3 333 SUPERFAMILY SSF111369 113 249 7.59E-8 T 13-10-2018 CDG55_13445 6671f652fabb3ba1af6e4a4e28f354c3 333 Pfam PF13437 HlyD family secretion protein 200 281 9.3E-10 T 13-10-2018 CDG55_13445 6671f652fabb3ba1af6e4a4e28f354c3 333 Pfam PF13533 Biotin-lipoyl like 48 96 5.1E-15 T 13-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain CDG55_13445 6671f652fabb3ba1af6e4a4e28f354c3 333 SUPERFAMILY SSF111369 47 103 2.75E-9 T 13-10-2018 CDG55_13445 6671f652fabb3ba1af6e4a4e28f354c3 333 Gene3D G3DSA:2.40.50.100 48 85 2.1E-12 T 13-10-2018 CDG55_13445 6671f652fabb3ba1af6e4a4e28f354c3 333 Gene3D G3DSA:1.10.287.470 111 180 9.6E-7 T 13-10-2018 CDG55_04845 0122913f2240d849feb59c022808f9fe 246 SUPERFAMILY SSF64438 26 245 2.01E-67 T 13-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic CDG55_04845 0122913f2240d849feb59c022808f9fe 246 Gene3D G3DSA:3.60.140.10 15 246 1.5E-69 T 13-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily CDG55_04845 0122913f2240d849feb59c022808f9fe 246 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 29 243 3.4E-61 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase CDG55_04845 0122913f2240d849feb59c022808f9fe 246 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 30 245 2.2E-49 T 13-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase CDG55_09485 0c00937e48567258347717ba7d4a41dc 341 Gene3D G3DSA:3.30.420.10 172 332 6.4E-10 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_09485 0c00937e48567258347717ba7d4a41dc 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 13-10-2018 IPR025246 Transposase IS30-like HTH domain CDG55_09485 0c00937e48567258347717ba7d4a41dc 341 Pfam PF00665 Integrase core domain 180 285 6.0E-15 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CDG55_09485 0c00937e48567258347717ba7d4a41dc 341 SUPERFAMILY SSF53098 180 326 2.91E-27 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_07510 061c564b508c48fcdcee3ba542d2d2c8 820 Pfam PF00932 Lamin Tail Domain 25 129 7.2E-10 T 13-10-2018 IPR001322 Lamin tail domain CDG55_07510 061c564b508c48fcdcee3ba542d2d2c8 820 Gene3D G3DSA:3.60.10.10 466 779 1.1E-36 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CDG55_07510 061c564b508c48fcdcee3ba542d2d2c8 820 SUPERFAMILY SSF56219 466 779 1.25E-28 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 PIRSF PIRSF001435 3 214 7.7E-53 T 13-10-2018 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 Pfam PF00633 Helix-hairpin-helix motif 105 132 8.5E-10 T 13-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 Hamap MF_00942 Endonuclease III [nth]. 3 214 36.902 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 Gene3D G3DSA:1.10.1670.10 16 208 4.8E-76 T 13-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 SUPERFAMILY SSF48150 6 211 1.88E-71 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 Gene3D G3DSA:1.10.340.30 26 137 4.8E-76 T 13-10-2018 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 SMART SM00478 43 190 1.5E-52 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 TIGRFAM TIGR01083 nth: endonuclease III 8 199 2.9E-86 T 13-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 39 168 3.1E-18 T 13-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 CDG55_05790 6fb6deadfd78cba68e0ebf30bd4877cd 228 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 192 208 3.4E-5 T 13-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 CDG55_13600 67dfad2411237e10283bc1f611dada99 231 Pfam PF01323 DSBA-like thioredoxin domain 2 204 1.4E-44 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 CDG55_13600 67dfad2411237e10283bc1f611dada99 231 Gene3D G3DSA:3.40.30.10 1 207 9.8E-71 T 13-10-2018 CDG55_13600 67dfad2411237e10283bc1f611dada99 231 SUPERFAMILY SSF52833 1 208 3.63E-43 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_05990 b76c6843d009e51ca0f97e7ce085625d 420 SMART SM00267 239 414 8.3E-57 T 13-10-2018 IPR000160 GGDEF domain CDG55_05990 b76c6843d009e51ca0f97e7ce085625d 420 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 248 413 2.2E-53 T 13-10-2018 IPR000160 GGDEF domain CDG55_05990 b76c6843d009e51ca0f97e7ce085625d 420 SUPERFAMILY SSF55073 255 413 6.28E-46 T 13-10-2018 IPR029787 Nucleotide cyclase CDG55_05990 b76c6843d009e51ca0f97e7ce085625d 420 Pfam PF00990 Diguanylate cyclase, GGDEF domain 251 410 1.3E-48 T 13-10-2018 IPR000160 GGDEF domain CDG55_05990 b76c6843d009e51ca0f97e7ce085625d 420 Gene3D G3DSA:3.30.70.270 237 414 4.1E-52 T 13-10-2018 CDG55_04500 b84051bef99610180d8e8016a5e2701a 409 Hamap MF_02040 Iron-sulfur cluster carrier protein. 142 392 36.488 T 13-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein CDG55_04500 b84051bef99610180d8e8016a5e2701a 409 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 150 391 3.3E-98 T 13-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CDG55_04500 b84051bef99610180d8e8016a5e2701a 409 Gene3D G3DSA:3.40.50.300 141 390 4.5E-82 T 13-10-2018 CDG55_04500 b84051bef99610180d8e8016a5e2701a 409 SUPERFAMILY SSF52540 152 404 8.38E-58 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03715 570fe0759bbfbbd05fdfad2d72663233 375 SMART SM01003 4 136 3.5E-53 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CDG55_03715 570fe0759bbfbbd05fdfad2d72663233 375 SMART SM01002 145 316 1.2E-77 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CDG55_03715 570fe0759bbfbbd05fdfad2d72663233 375 Gene3D G3DSA:3.40.50.720 3 369 9.4E-135 T 13-10-2018 CDG55_03715 570fe0759bbfbbd05fdfad2d72663233 375 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 371 9.8E-76 T 13-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CDG55_03715 570fe0759bbfbbd05fdfad2d72663233 375 SUPERFAMILY SSF52283 1 167 4.51E-48 T 13-10-2018 CDG55_03715 570fe0759bbfbbd05fdfad2d72663233 375 SUPERFAMILY SSF51735 136 322 4.24E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_03715 570fe0759bbfbbd05fdfad2d72663233 375 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 4.5E-39 T 13-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CDG55_03715 570fe0759bbfbbd05fdfad2d72663233 375 Gene3D G3DSA:3.40.50.720 136 323 9.4E-135 T 13-10-2018 CDG55_05050 d12fffd825434d3a30f44475c489be34 149 Gene3D G3DSA:3.40.630.30 1 144 2.1E-37 T 13-10-2018 CDG55_05050 d12fffd825434d3a30f44475c489be34 149 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 5 135 1.6E-34 T 13-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 CDG55_05050 d12fffd825434d3a30f44475c489be34 149 Pfam PF00583 Acetyltransferase (GNAT) family 14 112 1.7E-14 T 13-10-2018 IPR000182 GNAT domain CDG55_05050 d12fffd825434d3a30f44475c489be34 149 SUPERFAMILY SSF55729 2 138 1.22E-28 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_08375 f620836b8d62669d6179125eb4d513f3 666 Gene3D G3DSA:1.20.120.20 299 477 2.3E-6 T 13-10-2018 CDG55_04625 3e65c145f8516057ae1a3bcbf77c127f 237 SUPERFAMILY SSF53474 5 236 2.25E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_04625 3e65c145f8516057ae1a3bcbf77c127f 237 Gene3D G3DSA:3.40.50.1820 3 237 1.8E-21 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_04625 3e65c145f8516057ae1a3bcbf77c127f 237 Pfam PF03959 Serine hydrolase (FSH1) 45 221 2.7E-5 T 13-10-2018 IPR005645 Serine hydrolase FSH CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 Gene3D G3DSA:3.40.50.720 157 314 2.1E-40 T 13-10-2018 CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 320 413 1.0E-13 T 13-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 418 27.916 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 152 1.7E-45 T 13-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 SUPERFAMILY SSF69075 317 415 9.29E-19 T 13-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 PIRSF PIRSF000445 1 427 2.6E-138 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 SUPERFAMILY SSF51735 159 315 2.67E-29 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 SUPERFAMILY SSF69742 1 154 1.23E-44 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 Gene3D G3DSA:3.30.460.30 2 154 3.7E-51 T 13-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 168 306 1.3E-39 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CDG55_04825 44fa945b2a8427b33c63fb0411e7f2c9 427 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 414 4.1E-117 T 13-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 CDG55_13425 416ddd7c1caf7224ed408f612592ca8b 108 SUPERFAMILY SSF51182 13 105 2.04E-30 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CDG55_13425 416ddd7c1caf7224ed408f612592ca8b 108 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 12 107 25.112 T 13-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 CDG55_13425 416ddd7c1caf7224ed408f612592ca8b 108 Pfam PF06865 Protein of unknown function (DUF1255) 13 105 2.3E-32 T 13-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 CDG55_13425 416ddd7c1caf7224ed408f612592ca8b 108 Gene3D G3DSA:2.60.120.10 1 108 8.8E-47 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_03285 7de24e66a5f783380b1a4fb768e28e75 734 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 312 723 9.2E-14 T 13-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit CDG55_01890 eab433a3a626d2f5c2a4a4513352005d 100 SMART SM00418 5 94 2.6E-5 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_01890 eab433a3a626d2f5c2a4a4513352005d 100 SUPERFAMILY SSF46785 3 98 1.97E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_01890 eab433a3a626d2f5c2a4a4513352005d 100 Pfam PF12840 Helix-turn-helix domain 5 75 1.1E-14 T 13-10-2018 CDG55_01890 eab433a3a626d2f5c2a4a4513352005d 100 Gene3D G3DSA:1.10.10.10 2 100 2.0E-21 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_02640 a071de8e08f295ff3ae4d282ae6be8c3 157 Pfam PF00114 Pilin (bacterial filament) 30 157 1.0E-16 T 13-10-2018 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 CDG55_02640 a071de8e08f295ff3ae4d282ae6be8c3 157 Gene3D G3DSA:3.30.700.10 23 157 1.7E-33 T 13-10-2018 CDG55_02640 a071de8e08f295ff3ae4d282ae6be8c3 157 SUPERFAMILY SSF54523 4 130 5.76E-20 T 13-10-2018 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 50 530 39.47 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 Gene3D G3DSA:1.10.1390.10 513 555 7.7E-15 T 13-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 Pfam PF00342 Phosphoglucose isomerase 56 548 3.1E-173 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 Gene3D G3DSA:3.40.50.10490 102 297 5.1E-204 T 13-10-2018 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 151 170 7.2E-52 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 267 285 7.2E-52 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 489 503 7.2E-52 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 471 489 7.2E-52 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 344 365 7.2E-52 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 PRINTS PR00662 Glucose-6-phosphate isomerase signature 503 516 7.2E-52 T 13-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 SUPERFAMILY SSF53697 17 553 8.06E-179 T 13-10-2018 CDG55_14715 f4c356ae4ceb2dc1455ef0cc8d826404 557 Gene3D G3DSA:3.40.50.10490 20 512 5.1E-204 T 13-10-2018 CDG55_10520 39d73abd7bac8de1135140cde3dc71a5 163 Pfam PF10698 Protein of unknown function (DUF2505) 14 154 4.8E-13 T 13-10-2018 IPR019639 Protein of unknown function DUF2505 CDG55_14765 a6787848e17d182241ebf93f63023542 344 Pfam PF08485 Polysaccharide biosynthesis protein C-terminal 285 332 3.5E-25 T 13-10-2018 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain GO:0003978|GO:0009103 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344 CDG55_14765 a6787848e17d182241ebf93f63023542 344 SUPERFAMILY SSF51735 1 260 1.41E-56 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_14765 a6787848e17d182241ebf93f63023542 344 Gene3D G3DSA:3.90.25.30 166 322 3.5E-136 T 13-10-2018 CDG55_14765 a6787848e17d182241ebf93f63023542 344 Gene3D G3DSA:3.40.50.720 4 309 3.5E-136 T 13-10-2018 CDG55_14765 a6787848e17d182241ebf93f63023542 344 Pfam PF02719 Polysaccharide biosynthesis protein 7 282 7.5E-106 T 13-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CDG55_13065 78958f1156664e6ba10db2be66e83c8f 212 Pfam PF01613 Flavin reductase like domain 22 165 1.1E-13 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CDG55_13065 78958f1156664e6ba10db2be66e83c8f 212 SUPERFAMILY SSF50475 1 195 2.3E-37 T 13-10-2018 CDG55_13065 78958f1156664e6ba10db2be66e83c8f 212 Gene3D G3DSA:2.30.110.10 2 210 1.0E-52 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CDG55_13065 78958f1156664e6ba10db2be66e83c8f 212 SMART SM00903 19 169 9.5E-4 T 13-10-2018 IPR002563 Flavin reductase like domain GO:0010181 CDG55_13900 486698bc308dd557a67cc98965725672 521 Gene3D G3DSA:3.30.565.10 380 519 2.6E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_13900 486698bc308dd557a67cc98965725672 521 SUPERFAMILY SSF55874 385 515 4.58E-26 T 13-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CDG55_13900 486698bc308dd557a67cc98965725672 521 SUPERFAMILY SSF47384 307 374 2.94E-11 T 13-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 CDG55_13900 486698bc308dd557a67cc98965725672 521 Pfam PF00512 His Kinase A (phospho-acceptor) domain 313 374 2.4E-12 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_13900 486698bc308dd557a67cc98965725672 521 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 416 516 8.1E-15 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_13900 486698bc308dd557a67cc98965725672 521 SMART SM00387 415 521 1.6E-22 T 13-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase CDG55_13900 486698bc308dd557a67cc98965725672 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 467 1.5E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_13900 486698bc308dd557a67cc98965725672 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 481 1.5E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_13900 486698bc308dd557a67cc98965725672 521 PRINTS PR00344 Bacterial sensor protein C-terminal signature 482 500 1.5E-5 T 13-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 CDG55_13900 486698bc308dd557a67cc98965725672 521 SMART SM00388 313 377 9.1E-10 T 13-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 CDG55_13900 486698bc308dd557a67cc98965725672 521 Gene3D G3DSA:1.10.287.130 296 375 1.6E-15 T 13-10-2018 CDG55_05980 02376027e290ce87f5c3ac4423cdc847 221 SMART SM00479 23 211 8.1E-21 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CDG55_05980 02376027e290ce87f5c3ac4423cdc847 221 Hamap MF_00157 Ribonuclease T [rnt]. 1 221 90.101 T 13-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 CDG55_05980 02376027e290ce87f5c3ac4423cdc847 221 TIGRFAM TIGR01298 RNaseT: ribonuclease T 16 209 6.5E-83 T 13-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 CDG55_05980 02376027e290ce87f5c3ac4423cdc847 221 SUPERFAMILY SSF53098 14 210 2.55E-51 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_05980 02376027e290ce87f5c3ac4423cdc847 221 Pfam PF00929 Exonuclease 25 202 1.5E-31 T 13-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III CDG55_05980 02376027e290ce87f5c3ac4423cdc847 221 Gene3D G3DSA:3.30.420.10 15 212 8.0E-46 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_13060 e5003a1360386f2f66b2091c71c1b57d 110 Pfam PF08888 HopJ type III effector protein 4 107 5.8E-41 T 13-10-2018 IPR014984 HopJ type III effector protein CDG55_13060 e5003a1360386f2f66b2091c71c1b57d 110 Gene3D G3DSA:3.20.160.10 1 110 3.1E-43 T 13-10-2018 IPR038604 Type III effector HopJ superfamily CDG55_13030 ba9ecfdf0f940530a82c52742e35a125 430 Pfam PF03109 ABC1 family 110 228 8.4E-33 T 13-10-2018 IPR004147 UbiB domain CDG55_13030 ba9ecfdf0f940530a82c52742e35a125 430 SUPERFAMILY SSF56112 93 328 1.35E-20 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_10595 c095f842ea89b41a7b4a78adb24d8485 53 Pfam PF10013 Uncharacterized protein conserved in bacteria (DUF2256) 3 41 5.9E-18 T 13-10-2018 IPR017136 Uncharacterised conserved protein UCP037205 CDG55_10595 c095f842ea89b41a7b4a78adb24d8485 53 PIRSF PIRSF037205 1 50 3.3E-21 T 13-10-2018 IPR017136 Uncharacterised conserved protein UCP037205 CDG55_00960 e3c2d7d4a3e43d694f8b2292d8ee380f 562 SUPERFAMILY SSF48452 367 527 5.31E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_00960 e3c2d7d4a3e43d694f8b2292d8ee380f 562 SUPERFAMILY SSF48452 6 116 4.93E-6 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_04440 1ddbf5c63a9686b29417672a03bf1d1e 289 Gene3D G3DSA:3.40.50.1100 10 284 1.3E-60 T 13-10-2018 CDG55_04440 1ddbf5c63a9686b29417672a03bf1d1e 289 PIRSF PIRSF006278 6 289 4.8E-69 T 13-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase CDG55_04440 1ddbf5c63a9686b29417672a03bf1d1e 289 SUPERFAMILY SSF53686 15 286 1.44E-51 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDG55_04440 1ddbf5c63a9686b29417672a03bf1d1e 289 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 281 2.5E-18 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CDG55_04440 1ddbf5c63a9686b29417672a03bf1d1e 289 Gene3D G3DSA:3.40.50.1100 37 142 1.3E-60 T 13-10-2018 CDG55_11055 261c35abf161089a01ceefb52bcaaa4c 683 PIRSF PIRSF015380 2 679 7.2E-165 T 13-10-2018 IPR011385 Putative site-specific recombinase Gcr CDG55_11055 261c35abf161089a01ceefb52bcaaa4c 683 Pfam PF10136 Site-specific recombinase 26 664 2.8E-222 T 13-10-2018 IPR011385 Putative site-specific recombinase Gcr CDG55_02600 dd3912e4ac62e200d2364ffc6266357c 375 Gene3D G3DSA:3.40.640.10 7 247 1.0E-81 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_02600 dd3912e4ac62e200d2364ffc6266357c 375 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 15 366 3.1E-115 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDG55_02600 dd3912e4ac62e200d2364ffc6266357c 375 SUPERFAMILY SSF53383 13 367 2.61E-103 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_02600 dd3912e4ac62e200d2364ffc6266357c 375 Gene3D G3DSA:3.90.1150.10 249 372 3.1E-31 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_02600 dd3912e4ac62e200d2364ffc6266357c 375 PIRSF PIRSF000390 1 370 5.5E-97 T 13-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CDG55_06000 297ec5cb3a68c896d8521c3aa289daf2 357 Gene3D G3DSA:3.20.20.210 1 357 2.3E-162 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CDG55_06000 297ec5cb3a68c896d8521c3aa289daf2 357 SUPERFAMILY SSF51726 1 355 6.54E-116 T 13-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 CDG55_06000 297ec5cb3a68c896d8521c3aa289daf2 357 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 351 8.0E-137 T 13-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CDG55_06000 297ec5cb3a68c896d8521c3aa289daf2 357 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 350 1.7E-134 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CDG55_06000 297ec5cb3a68c896d8521c3aa289daf2 357 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 352 48.739 T 13-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 CDG55_03830 a837b8afecfa724a4dc1d4d675d9ec40 162 Gene3D G3DSA:3.30.70.560 2 155 6.6E-49 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CDG55_03830 a837b8afecfa724a4dc1d4d675d9ec40 162 SUPERFAMILY SSF55083 4 149 1.44E-47 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CDG55_03830 a837b8afecfa724a4dc1d4d675d9ec40 162 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 6 130 6.8E-41 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CDG55_03830 a837b8afecfa724a4dc1d4d675d9ec40 162 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 130 5.6E-35 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CDG55_11205 87a5b6703d50d1604e6c254b47949b4b 303 Pfam PF00348 Polyprenyl synthetase 36 273 4.2E-56 T 13-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 CDG55_11205 87a5b6703d50d1604e6c254b47949b4b 303 SUPERFAMILY SSF48576 11 290 7.4E-78 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CDG55_11205 87a5b6703d50d1604e6c254b47949b4b 303 Gene3D G3DSA:1.10.600.10 6 300 1.6E-86 T 13-10-2018 IPR008949 Isoprenoid synthase domain superfamily CDG55_07505 245e1f1c2c3624db5de9f4099d64e6ab 238 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 59 237 8.0E-52 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CDG55_07505 245e1f1c2c3624db5de9f4099d64e6ab 238 Gene3D G3DSA:3.40.50.150 35 238 6.8E-57 T 13-10-2018 CDG55_07505 245e1f1c2c3624db5de9f4099d64e6ab 238 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 26 237 28.727 T 13-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 CDG55_07505 245e1f1c2c3624db5de9f4099d64e6ab 238 SUPERFAMILY SSF53335 43 235 4.22E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_07505 245e1f1c2c3624db5de9f4099d64e6ab 238 Pfam PF02390 Putative methyltransferase 64 230 2.2E-49 T 13-10-2018 CDG55_08085 8564ef41b5fbb2967182f1abf15a5994 114 Gene3D G3DSA:2.40.10.220 2 114 5.8E-35 T 13-10-2018 CDG55_08085 8564ef41b5fbb2967182f1abf15a5994 114 Pfam PF07238 PilZ domain 11 74 2.6E-6 T 13-10-2018 IPR009875 PilZ domain GO:0035438 CDG55_13775 54d49e6a0faa6669e44b3e5fa75cb76b 258 Gene3D G3DSA:3.40.50.10090 32 166 3.0E-43 T 13-10-2018 CDG55_13775 54d49e6a0faa6669e44b3e5fa75cb76b 258 SUPERFAMILY SSF69618 3 231 1.83E-39 T 13-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13775 54d49e6a0faa6669e44b3e5fa75cb76b 258 Pfam PF02602 Uroporphyrinogen-III synthase HemD 15 230 3.6E-28 T 13-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 CDG55_13775 54d49e6a0faa6669e44b3e5fa75cb76b 258 Gene3D G3DSA:3.40.50.10090 4 231 3.0E-43 T 13-10-2018 CDG55_02220 838c976aa26dd3d1a57b84cb792952c2 318 Pfam PF01636 Phosphotransferase enzyme family 28 254 1.5E-20 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CDG55_02220 838c976aa26dd3d1a57b84cb792952c2 318 SUPERFAMILY SSF56112 5 311 1.04E-58 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_02220 838c976aa26dd3d1a57b84cb792952c2 318 Hamap MF_00301 Homoserine kinase [thrB]. 1 318 91.937 T 13-10-2018 IPR005280 Homoserine kinase, type II GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 CDG55_02220 838c976aa26dd3d1a57b84cb792952c2 318 Gene3D G3DSA:3.90.1200.10 104 316 1.3E-54 T 13-10-2018 CDG55_02220 838c976aa26dd3d1a57b84cb792952c2 318 Gene3D G3DSA:3.30.200.20 1 101 1.5E-19 T 13-10-2018 CDG55_12120 be6de5ceda06765406a5aa93f8a6a145 270 Gene3D G3DSA:3.40.50.150 2 205 4.9E-67 T 13-10-2018 CDG55_12120 be6de5ceda06765406a5aa93f8a6a145 270 SMART SM00650 30 202 9.2E-82 T 13-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 CDG55_12120 be6de5ceda06765406a5aa93f8a6a145 270 SUPERFAMILY SSF53335 10 268 3.69E-76 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_12120 be6de5ceda06765406a5aa93f8a6a145 270 Gene3D G3DSA:1.10.8.100 208 270 1.1E-21 T 13-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 CDG55_12120 be6de5ceda06765406a5aa93f8a6a145 270 Pfam PF00398 Ribosomal RNA adenine dimethylase 14 266 1.0E-64 T 13-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CDG55_12120 be6de5ceda06765406a5aa93f8a6a145 270 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 14 269 57.747 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CDG55_12120 be6de5ceda06765406a5aa93f8a6a145 270 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 15 267 1.8E-86 T 13-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00097 Anthranilate synthase component II signature 99 107 4.1E-35 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00097 Anthranilate synthase component II signature 74 85 4.1E-35 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00097 Anthranilate synthase component II signature 47 56 4.1E-35 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00097 Anthranilate synthase component II signature 119 131 4.1E-35 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00097 Anthranilate synthase component II signature 169 182 4.1E-35 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00097 Anthranilate synthase component II signature 2 16 4.1E-35 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 Pfam PF00117 Glutamine amidotransferase class-I 4 190 5.0E-53 T 13-10-2018 IPR017926 Glutamine amidotransferase CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 8.2E-5 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 8.2E-5 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 3.7E-84 T 13-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 Gene3D G3DSA:3.40.50.880 1 193 5.0E-62 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 SUPERFAMILY SSF52317 1 192 9.54E-55 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 4.1E-13 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 4.1E-13 T 13-10-2018 CDG55_06060 b778b387fbedad3ca3c2500447a16164 194 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 4.1E-13 T 13-10-2018 CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 Pfam PF00106 short chain dehydrogenase 17 212 2.4E-44 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 Gene3D G3DSA:3.40.50.720 3 248 3.6E-66 T 13-10-2018 CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 94 105 1.2E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.2E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 187 1.2E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 189 206 1.2E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.2E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 142 158 1.2E-21 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_14885 bf57230c2451f380c95ea8d2678451a0 248 SUPERFAMILY SSF51735 12 244 6.18E-59 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_10550 1e67783f283c1d42700b3b314f4afb14 366 SUPERFAMILY SSF46689 317 361 2.51E-9 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_10550 1e67783f283c1d42700b3b314f4afb14 366 Pfam PF12833 Helix-turn-helix domain 284 359 7.2E-16 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_10550 1e67783f283c1d42700b3b314f4afb14 366 SMART SM00342 277 358 2.5E-15 T 13-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 CDG55_10550 1e67783f283c1d42700b3b314f4afb14 366 Gene3D G3DSA:1.10.10.60 260 361 7.4E-21 T 13-10-2018 CDG55_10550 1e67783f283c1d42700b3b314f4afb14 366 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 51 231 5.4E-32 T 13-10-2018 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal CDG55_13490 1c8db83c749c0b3977771fa01888795d 78 Gene3D G3DSA:3.40.30.10 5 74 1.0E-21 T 13-10-2018 CDG55_13490 1c8db83c749c0b3977771fa01888795d 78 Pfam PF00462 Glutaredoxin 7 66 1.0E-21 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CDG55_13490 1c8db83c749c0b3977771fa01888795d 78 PRINTS PR00160 Glutaredoxin signature 49 62 6.9E-10 T 13-10-2018 IPR014025 Glutaredoxin subgroup CDG55_13490 1c8db83c749c0b3977771fa01888795d 78 PRINTS PR00160 Glutaredoxin signature 63 76 6.9E-10 T 13-10-2018 IPR014025 Glutaredoxin subgroup CDG55_13490 1c8db83c749c0b3977771fa01888795d 78 PRINTS PR00160 Glutaredoxin signature 7 25 6.9E-10 T 13-10-2018 IPR014025 Glutaredoxin subgroup CDG55_13490 1c8db83c749c0b3977771fa01888795d 78 SUPERFAMILY SSF52833 5 76 2.24E-23 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_01400 07a64b05b9bc8214c998910399cc9ca3 178 Gene3D G3DSA:2.70.70.10 29 178 8.0E-49 T 13-10-2018 IPR011055 Duplicated hybrid motif CDG55_01400 07a64b05b9bc8214c998910399cc9ca3 178 SUPERFAMILY SSF51261 41 177 8.37E-34 T 13-10-2018 IPR011055 Duplicated hybrid motif CDG55_01400 07a64b05b9bc8214c998910399cc9ca3 178 Pfam PF01551 Peptidase family M23 72 166 8.6E-24 T 13-10-2018 IPR016047 Peptidase M23 CDG55_02615 5d01f65b2f31ccc91130cdcc656bda66 308 Pfam PF00535 Glycosyl transferase family 2 10 117 3.1E-21 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDG55_02615 5d01f65b2f31ccc91130cdcc656bda66 308 SUPERFAMILY SSF53448 4 285 1.22E-38 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_02615 5d01f65b2f31ccc91130cdcc656bda66 308 Gene3D G3DSA:3.90.550.10 3 223 1.2E-31 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 7 268 26.492 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 SUPERFAMILY SSF51735 8 162 9.57E-36 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 Gene3D G3DSA:3.40.50.720 5 165 1.4E-50 T 13-10-2018 CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 164 268 9.1E-35 T 13-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 9 268 6.7E-78 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 Gene3D G3DSA:1.10.3730.10 166 273 3.3E-41 T 13-10-2018 CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 SUPERFAMILY SSF48179 163 271 9.18E-34 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 PIRSF PIRSF000193 6 271 1.2E-74 T 13-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 CDG55_03960 0983b559be2a21d2d949e8b56ff67fa5 279 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 9 100 2.4E-22 T 13-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CDG55_02810 f9914a138cf9617eb355dc6a44bd3ad2 196 Gene3D G3DSA:3.40.50.360 1 193 1.6E-62 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_02810 f9914a138cf9617eb355dc6a44bd3ad2 196 Pfam PF02525 Flavodoxin-like fold 3 188 3.4E-34 T 13-10-2018 IPR003680 Flavodoxin-like fold CDG55_02810 f9914a138cf9617eb355dc6a44bd3ad2 196 SUPERFAMILY SSF52218 1 193 6.19E-42 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_08030 ef14175b07a1fdf0dcd1118e7435a03d 337 Gene3D G3DSA:3.90.1200.10 93 330 5.2E-64 T 13-10-2018 CDG55_08030 ef14175b07a1fdf0dcd1118e7435a03d 337 Pfam PF01636 Phosphotransferase enzyme family 24 243 2.8E-25 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CDG55_08030 ef14175b07a1fdf0dcd1118e7435a03d 337 Gene3D G3DSA:3.30.200.20 1 92 1.9E-24 T 13-10-2018 CDG55_08030 ef14175b07a1fdf0dcd1118e7435a03d 337 SUPERFAMILY SSF56112 7 309 7.37E-41 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_01870 9ab635e6d71fff38f2b64ac079016b29 217 SUPERFAMILY SSF50475 11 217 4.34E-59 T 13-10-2018 CDG55_01870 9ab635e6d71fff38f2b64ac079016b29 217 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 177 217 4.4E-18 T 13-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDG55_01870 9ab635e6d71fff38f2b64ac079016b29 217 Gene3D G3DSA:2.30.110.10 4 217 4.9E-76 T 13-10-2018 IPR012349 FMN-binding split barrel GO:0048037 CDG55_01870 9ab635e6d71fff38f2b64ac079016b29 217 PIRSF PIRSF000190 1 217 3.6E-73 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDG55_01870 9ab635e6d71fff38f2b64ac079016b29 217 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 6 217 2.4E-76 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDG55_01870 9ab635e6d71fff38f2b64ac079016b29 217 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 40 123 3.7E-24 T 13-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDG55_01870 9ab635e6d71fff38f2b64ac079016b29 217 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 14 217 35.774 T 13-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 CDG55_12145 d284927c0a8ac509103340d8caf41089 219 Pfam PF02798 Glutathione S-transferase, N-terminal domain 12 79 3.6E-11 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_12145 d284927c0a8ac509103340d8caf41089 219 SUPERFAMILY SSF47616 91 208 1.09E-17 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CDG55_12145 d284927c0a8ac509103340d8caf41089 219 Gene3D G3DSA:3.40.30.10 12 204 2.1E-59 T 13-10-2018 CDG55_12145 d284927c0a8ac509103340d8caf41089 219 SUPERFAMILY SSF52833 10 88 1.14E-13 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_12145 d284927c0a8ac509103340d8caf41089 219 Gene3D G3DSA:1.20.1050.10 88 196 2.1E-59 T 13-10-2018 CDG55_05735 53e2979db200ffa2247b995e35102ec8 182 Pfam PF03602 Conserved hypothetical protein 95 5 178 1.7E-54 T 13-10-2018 CDG55_05735 53e2979db200ffa2247b995e35102ec8 182 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 3 180 2.2E-52 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 CDG55_05735 53e2979db200ffa2247b995e35102ec8 182 PIRSF PIRSF004553 4 181 2.2E-46 T 13-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 CDG55_05735 53e2979db200ffa2247b995e35102ec8 182 Gene3D G3DSA:3.40.50.150 1 181 1.3E-55 T 13-10-2018 CDG55_05735 53e2979db200ffa2247b995e35102ec8 182 SUPERFAMILY SSF53335 5 178 7.29E-47 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 Pfam PF02110 Hydroxyethylthiazole kinase family 16 258 1.9E-66 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 17 263 27.407 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 SUPERFAMILY SSF53613 11 269 3.51E-50 T 13-10-2018 IPR029056 Ribokinase-like CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 67 75 2.2E-25 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 167 184 2.2E-25 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 23 30 2.2E-25 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 36 57 2.2E-25 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 93 110 2.2E-25 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 124 138 2.2E-25 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 PIRSF PIRSF000513 9 271 1.4E-75 T 13-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 CDG55_06890 acde14b708e0b1b5933f4ff23c99dae0 271 Gene3D G3DSA:3.40.1190.20 1 270 3.3E-82 T 13-10-2018 IPR029056 Ribokinase-like CDG55_04680 61135a80d9d1ab0ac6009c817f0f3710 380 Gene3D G3DSA:1.10.3720.10 167 379 9.6E-22 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_04680 61135a80d9d1ab0ac6009c817f0f3710 380 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 195 380 7.0E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_04680 61135a80d9d1ab0ac6009c817f0f3710 380 SUPERFAMILY SSF161098 175 363 4.58E-23 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_11735 4da768d487b87f5218d6d19a2fd4ed4f 368 SUPERFAMILY SSF110997 286 359 1.96E-13 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CDG55_11735 4da768d487b87f5218d6d19a2fd4ed4f 368 Pfam PF05036 Sporulation related domain 287 360 2.9E-15 T 13-10-2018 IPR007730 Sporulation-like domain GO:0042834 CDG55_11735 4da768d487b87f5218d6d19a2fd4ed4f 368 Gene3D G3DSA:3.30.70.1070 289 355 2.4E-7 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CDG55_07105 9030aef5002ea4e97cfc6ef98f570409 88 Pfam PF01649 Ribosomal protein S20 2 84 3.3E-26 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_07105 9030aef5002ea4e97cfc6ef98f570409 88 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 86 4.4E-28 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_07105 9030aef5002ea4e97cfc6ef98f570409 88 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.843 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_07105 9030aef5002ea4e97cfc6ef98f570409 88 Gene3D G3DSA:1.20.58.110 1 87 1.2E-27 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_07105 9030aef5002ea4e97cfc6ef98f570409 88 SUPERFAMILY SSF46992 3 86 6.41E-31 T 13-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_07105 9030aef5002ea4e97cfc6ef98f570409 88 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 88 3.0E-35 T 13-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_01745 c6c755e11cab1e892447ecc1dd632b35 384 Pfam PF14294 Domain of unknown function (DUF4372) 3 76 7.9E-26 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 CDG55_01745 c6c755e11cab1e892447ecc1dd632b35 384 SUPERFAMILY SSF53098 90 376 7.59E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_01745 c6c755e11cab1e892447ecc1dd632b35 384 Pfam PF01609 Transposase DDE domain 141 331 5.6E-23 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDG55_00820 c6c755e11cab1e892447ecc1dd632b35 384 Pfam PF14294 Domain of unknown function (DUF4372) 3 76 7.9E-26 T 13-10-2018 IPR025399 Domain of unknown function DUF4372 CDG55_00820 c6c755e11cab1e892447ecc1dd632b35 384 SUPERFAMILY SSF53098 90 376 7.59E-30 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_00820 c6c755e11cab1e892447ecc1dd632b35 384 Pfam PF01609 Transposase DDE domain 141 331 5.6E-23 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDG55_07855 ea0d2425a78e8da21006f0fc7a35c90e 302 Gene3D G3DSA:2.60.200.30 131 267 1.2E-90 T 13-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CDG55_07855 ea0d2425a78e8da21006f0fc7a35c90e 302 SUPERFAMILY SSF111331 10 293 5.76E-87 T 13-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CDG55_07855 ea0d2425a78e8da21006f0fc7a35c90e 302 Pfam PF01513 ATP-NAD kinase 58 273 3.3E-65 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CDG55_07855 ea0d2425a78e8da21006f0fc7a35c90e 302 Gene3D G3DSA:3.40.50.10330 30 290 1.2E-90 T 13-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 CDG55_07855 ea0d2425a78e8da21006f0fc7a35c90e 302 Hamap MF_00361 NAD kinase [nadK]. 9 290 32.534 T 13-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 CDG55_08880 d36ca369c8b86dd34096af9129bfdf26 414 Pfam PF00487 Fatty acid desaturase 133 341 1.6E-28 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 CDG55_14530 948c0f60c26db75cc3d133411dc39666 87 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 8 87 3.0E-35 T 13-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 CDG55_14530 948c0f60c26db75cc3d133411dc39666 87 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 8 87 2.4E-39 T 13-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 CDG55_14530 948c0f60c26db75cc3d133411dc39666 87 SUPERFAMILY SSF143011 6 86 5.89E-28 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CDG55_14530 948c0f60c26db75cc3d133411dc39666 87 Gene3D G3DSA:3.30.2310.20 4 87 3.6E-40 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CDG55_08755 fd596abbc7833875228c559304671d16 363 Pfam PF00793 DAHP synthetase I family 53 348 3.3E-96 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDG55_08755 fd596abbc7833875228c559304671d16 363 SUPERFAMILY SSF51569 16 357 6.96E-134 T 13-10-2018 CDG55_08755 fd596abbc7833875228c559304671d16 363 Gene3D G3DSA:3.20.20.70 11 359 1.3E-153 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_08755 fd596abbc7833875228c559304671d16 363 PIRSF PIRSF001361 3 363 2.9E-159 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CDG55_08755 fd596abbc7833875228c559304671d16 363 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 15 358 4.6E-153 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CDG55_05810 2d13f3dba8a1f5e825c9fc953005da25 257 PIRSF PIRSF006157 1 257 1.3E-82 T 13-10-2018 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type GO:0008270|GO:0016701|GO:0055114 CDG55_05810 2d13f3dba8a1f5e825c9fc953005da25 257 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 9 256 1.2E-40 T 13-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 CDG55_05810 2d13f3dba8a1f5e825c9fc953005da25 257 SUPERFAMILY SSF53213 6 257 1.96E-83 T 13-10-2018 CDG55_05810 2d13f3dba8a1f5e825c9fc953005da25 257 Gene3D G3DSA:3.40.830.10 1 257 1.4E-85 T 13-10-2018 CDG55_09935 a47baa57e4f55021fa124fd22260cf38 288 SUPERFAMILY SSF52768 6 281 3.55E-42 T 13-10-2018 IPR023696 Ureohydrolase domain superfamily CDG55_09935 a47baa57e4f55021fa124fd22260cf38 288 Pfam PF00850 Histone deacetylase domain 19 269 3.1E-20 T 13-10-2018 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 CDG55_09935 a47baa57e4f55021fa124fd22260cf38 288 Gene3D G3DSA:3.40.800.20 177 284 1.3E-7 T 13-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 CDG55_09935 a47baa57e4f55021fa124fd22260cf38 288 Gene3D G3DSA:3.40.800.20 2 164 7.5E-19 T 13-10-2018 IPR037138 Histone deacetylase domain superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 CDG55_12320 5e8f46c1af183a70bbfe76156da83c1a 222 Gene3D G3DSA:3.90.730.10 49 221 2.5E-10 T 13-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 CDG55_12320 5e8f46c1af183a70bbfe76156da83c1a 222 SUPERFAMILY SSF55895 38 218 6.41E-14 T 13-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 CDG55_14510 66bec5f8006deab12b0a941c2f7516e5 93 Pfam PF14020 Protein of unknown function (DUF4236) 3 57 2.6E-20 T 13-10-2018 IPR025330 Domain of unknown function DUF4236 CDG55_06855 04c4b6cb6d77e25c999422b0f5ef6248 188 Gene3D G3DSA:3.10.450.50 47 175 2.5E-8 T 13-10-2018 CDG55_06855 04c4b6cb6d77e25c999422b0f5ef6248 188 SUPERFAMILY SSF54427 47 165 1.06E-11 T 13-10-2018 IPR032710 NTF2-like domain superfamily CDG55_04765 f8f4025d369b8040a5051a426e8923f0 219 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 22 213 8.0E-79 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_04765 f8f4025d369b8040a5051a426e8923f0 219 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 16 218 41.17 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_04765 f8f4025d369b8040a5051a426e8923f0 219 SUPERFAMILY SSF55821 17 217 7.33E-81 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CDG55_04765 f8f4025d369b8040a5051a426e8923f0 219 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 19 214 7.8E-74 T 13-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 CDG55_04765 f8f4025d369b8040a5051a426e8923f0 219 Gene3D G3DSA:3.90.870.10 7 219 2.5E-84 T 13-10-2018 CDG55_07400 dd88274f85f02aea0cd4f4e27a9c9549 155 Pfam PF05360 yiaA/B two helix domain 12 64 1.8E-21 T 13-10-2018 IPR008024 YiaAB two helix CDG55_07400 dd88274f85f02aea0cd4f4e27a9c9549 155 Pfam PF05360 yiaA/B two helix domain 75 127 3.4E-16 T 13-10-2018 IPR008024 YiaAB two helix CDG55_00580 3bd87941a4fa654ec533d6de45db7734 258 Gene3D G3DSA:3.40.50.300 1 258 2.7E-64 T 13-10-2018 CDG55_00580 3bd87941a4fa654ec533d6de45db7734 258 PIRSF PIRSF009320 100 258 1.1E-8 T 13-10-2018 CDG55_00580 3bd87941a4fa654ec533d6de45db7734 258 PIRSF PIRSF009320 3 71 1.7E-15 T 13-10-2018 CDG55_00580 3bd87941a4fa654ec533d6de45db7734 258 SUPERFAMILY SSF52540 3 257 3.88E-51 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00580 3bd87941a4fa654ec533d6de45db7734 258 Pfam PF13614 AAA domain 3 182 3.2E-48 T 13-10-2018 IPR025669 AAA domain CDG55_05110 197541aba476ffc1fb41be5377f70008 221 Pfam PF00691 OmpA family 116 211 2.2E-24 T 13-10-2018 IPR006665 OmpA-like domain CDG55_05110 197541aba476ffc1fb41be5377f70008 221 Gene3D G3DSA:3.30.1330.60 79 221 9.9E-46 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_05110 197541aba476ffc1fb41be5377f70008 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 162 179 4.4E-9 T 13-10-2018 CDG55_05110 197541aba476ffc1fb41be5377f70008 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 200 220 4.4E-9 T 13-10-2018 CDG55_05110 197541aba476ffc1fb41be5377f70008 221 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 180 199 4.4E-9 T 13-10-2018 CDG55_05110 197541aba476ffc1fb41be5377f70008 221 PRINTS PR01021 OMPA domain signature 147 162 1.7E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_05110 197541aba476ffc1fb41be5377f70008 221 PRINTS PR01021 OMPA domain signature 162 178 1.7E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_05110 197541aba476ffc1fb41be5377f70008 221 PRINTS PR01021 OMPA domain signature 117 139 1.7E-15 T 13-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 CDG55_05110 197541aba476ffc1fb41be5377f70008 221 SUPERFAMILY SSF103088 105 217 1.27E-37 T 13-10-2018 IPR036737 OmpA-like domain superfamily CDG55_08770 40d9e493ca198d966b886d4b0117eb8f 488 Pfam PF03929 PepSY-associated TM region 11 279 1.1E-7 T 13-10-2018 IPR005625 PepSY-associated TM protein CDG55_02125 1effe11857632f1c4e14460e0fe7fbcc 261 SUPERFAMILY SSF55831 100 226 3.79E-6 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_02125 1effe11857632f1c4e14460e0fe7fbcc 261 Gene3D G3DSA:3.30.572.10 73 252 1.8E-5 T 13-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 CDG55_01390 a883f36bf07818ae1491a9fa1497e57d 184 Pfam PF03352 Methyladenine glycosylase 8 183 1.3E-71 T 13-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 CDG55_01390 a883f36bf07818ae1491a9fa1497e57d 184 Gene3D G3DSA:1.10.340.30 3 184 5.2E-75 T 13-10-2018 CDG55_01390 a883f36bf07818ae1491a9fa1497e57d 184 SUPERFAMILY SSF48150 4 183 4.55E-74 T 13-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 CDG55_03505 84ee0544cd8e7b38f67c62bcd74a4e91 222 Pfam PF04172 LrgB-like family 11 218 1.0E-49 T 13-10-2018 IPR007300 CidB/LrgB family CDG55_11670 74bfd18f0357c2a0c2ce06ed2e3c7c86 284 Pfam PF01734 Patatin-like phospholipase 9 172 1.7E-16 T 13-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 CDG55_11670 74bfd18f0357c2a0c2ce06ed2e3c7c86 284 SUPERFAMILY SSF52151 3 247 1.12E-33 T 13-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CDG55_11670 74bfd18f0357c2a0c2ce06ed2e3c7c86 284 Gene3D G3DSA:3.40.1090.10 1 135 6.2E-11 T 13-10-2018 CDG55_11025 bbcb75622b0574179ce10093a0df2635 254 Pfam PF11738 Protein of unknown function (DUF3298) 166 234 2.3E-10 T 13-10-2018 IPR021729 Domain of unknown function DUF3298 CDG55_11025 bbcb75622b0574179ce10093a0df2635 254 Gene3D G3DSA:3.90.640.20 160 249 2.0E-17 T 13-10-2018 IPR037126 PdaC/RsiV-like superfamily CDG55_11025 bbcb75622b0574179ce10093a0df2635 254 Gene3D G3DSA:3.30.565.40 45 159 1.3E-12 T 13-10-2018 CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 18 211 2.7E-86 T 13-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 134 198 7.0E-28 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 Gene3D G3DSA:3.30.300.130 121 210 3.6E-20 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 SUPERFAMILY SSF89360 14 110 4.12E-20 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 Pfam PF01521 Iron-sulphur cluster biosynthesis 17 112 4.2E-8 T 13-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 Pfam PF01106 NifU-like domain 127 198 3.5E-20 T 13-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 Gene3D G3DSA:2.60.300.12 16 113 5.4E-9 T 13-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 16 211 40.977 T 13-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 CDG55_05475 145b17363a134f6c18fa35d4f4d2e075 212 SUPERFAMILY SSF117916 111 204 3.27E-21 T 13-10-2018 IPR034904 Fe-S cluster assembly domain superfamily CDG55_02630 d185081076667fcd6bdbcd9b3713568f 408 Gene3D G3DSA:3.40.50.2000 211 379 2.2E-36 T 13-10-2018 CDG55_02630 d185081076667fcd6bdbcd9b3713568f 408 Gene3D G3DSA:3.40.50.2000 1 210 3.7E-28 T 13-10-2018 CDG55_02630 d185081076667fcd6bdbcd9b3713568f 408 Pfam PF00534 Glycosyl transferases group 1 210 366 5.8E-30 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CDG55_02630 d185081076667fcd6bdbcd9b3713568f 408 SUPERFAMILY SSF53756 26 396 8.9E-68 T 13-10-2018 CDG55_02630 d185081076667fcd6bdbcd9b3713568f 408 Pfam PF13439 Glycosyltransferase Family 4 26 201 6.9E-18 T 13-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 CDG55_00660 2f4d10f3a342cf162287e9a3451d33e0 208 SUPERFAMILY SSF51306 80 200 5.58E-17 T 13-10-2018 IPR036286 LexA/Signal peptidase-like superfamily CDG55_00660 2f4d10f3a342cf162287e9a3451d33e0 208 Pfam PF00717 Peptidase S24-like 101 148 8.5E-9 T 13-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C CDG55_00660 2f4d10f3a342cf162287e9a3451d33e0 208 Gene3D G3DSA:2.10.109.10 71 204 6.8E-25 T 13-10-2018 CDG55_12605 077a4b1fb82c7e24f388b7d245fc3e92 314 Pfam PF11726 Inovirus Gp2 130 303 1.6E-19 T 13-10-2018 CDG55_13520 15286246e9d29c0fa6be9ddcde45a476 171 Pfam PF04224 Protein of unknown function, DUF417 22 162 1.1E-31 T 13-10-2018 IPR007339 Inner membrane protein RclC-like CDG55_13520 15286246e9d29c0fa6be9ddcde45a476 171 PIRSF PIRSF028065 8 167 1.2E-36 T 13-10-2018 IPR016865 Inner membrane protein RclC CDG55_01585 fe70d197ae910e057fb4557a9993a053 225 SUPERFAMILY SSF46689 27 99 1.59E-10 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_01585 fe70d197ae910e057fb4557a9993a053 225 Gene3D G3DSA:1.10.357.10 80 218 2.1E-7 T 13-10-2018 CDG55_01585 fe70d197ae910e057fb4557a9993a053 225 Gene3D G3DSA:1.10.10.60 7 79 1.4E-10 T 13-10-2018 CDG55_01585 fe70d197ae910e057fb4557a9993a053 225 Pfam PF00440 Bacterial regulatory proteins, tetR family 37 81 1.2E-4 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_09090 815697b6ade6625958939a5da20b1f15 196 SMART SM00448 4 112 0.0036 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_09090 815697b6ade6625958939a5da20b1f15 196 Gene3D G3DSA:1.10.10.10 131 190 1.4E-15 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_09090 815697b6ade6625958939a5da20b1f15 196 Pfam PF00072 Response regulator receiver domain 6 112 1.8E-9 T 13-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 CDG55_09090 815697b6ade6625958939a5da20b1f15 196 SMART SM01012 128 183 3.5E-18 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 CDG55_09090 815697b6ade6625958939a5da20b1f15 196 Gene3D G3DSA:3.40.50.2300 2 127 1.2E-13 T 13-10-2018 CDG55_09090 815697b6ade6625958939a5da20b1f15 196 Pfam PF03861 ANTAR domain 131 183 1.2E-15 T 13-10-2018 IPR005561 ANTAR domain GO:0003723 CDG55_09090 815697b6ade6625958939a5da20b1f15 196 SUPERFAMILY SSF52172 1 183 1.85E-41 T 13-10-2018 IPR011006 CheY-like superfamily CDG55_09090 815697b6ade6625958939a5da20b1f15 196 PIRSF PIRSF036382 1 190 6.0E-48 T 13-10-2018 IPR008327 Signal transduction response regulator, antiterminator CDG55_14475 2f343d93dc862ae37ca8ae5cbbab3c79 346 TIGRFAM TIGR02566 cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3 8 345 7.3E-121 T 13-10-2018 IPR013399 CRISPR-associated protein Csy3 CDG55_14475 2f343d93dc862ae37ca8ae5cbbab3c79 346 Pfam PF09615 CRISPR-associated protein (Cas_Csy3) 9 342 3.5E-132 T 13-10-2018 IPR013399 CRISPR-associated protein Csy3 CDG55_11580 348b54a12e3cd87b09b3b911ea8f6189 452 TIGRFAM TIGR03173 pbuX: xanthine permease 29 448 3.8E-128 T 13-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 CDG55_11580 348b54a12e3cd87b09b3b911ea8f6189 452 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 22 446 3.8E-123 T 13-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 CDG55_11580 348b54a12e3cd87b09b3b911ea8f6189 452 Pfam PF00860 Permease family 25 416 8.4E-99 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CDG55_09605 1e2f0eb96eb72b1b480a8da6ffbd9f57 285 SUPERFAMILY SSF103481 184 281 3.14E-7 T 13-10-2018 CDG55_09605 1e2f0eb96eb72b1b480a8da6ffbd9f57 285 Pfam PF00892 EamA-like transporter family 151 280 2.9E-6 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_09605 1e2f0eb96eb72b1b480a8da6ffbd9f57 285 Pfam PF00892 EamA-like transporter family 3 132 4.6E-10 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_09605 1e2f0eb96eb72b1b480a8da6ffbd9f57 285 SUPERFAMILY SSF103481 41 135 5.36E-7 T 13-10-2018 CDG55_08810 f0995e0dfe49e468325ccadf8ea07b2f 418 SUPERFAMILY SSF103473 13 408 2.49E-35 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_08810 f0995e0dfe49e468325ccadf8ea07b2f 418 Pfam PF07690 Major Facilitator Superfamily 298 412 2.8E-10 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_08810 f0995e0dfe49e468325ccadf8ea07b2f 418 Pfam PF07690 Major Facilitator Superfamily 17 289 7.9E-19 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_08810 f0995e0dfe49e468325ccadf8ea07b2f 418 Gene3D G3DSA:1.20.1250.20 10 408 7.5E-31 T 13-10-2018 CDG55_01690 548519df627e6216abe9b90284fbf627 124 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 7 101 2.6E-9 T 13-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 CDG55_01690 548519df627e6216abe9b90284fbf627 124 SUPERFAMILY SSF69754 1 96 1.83E-10 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CDG55_01690 548519df627e6216abe9b90284fbf627 124 Gene3D G3DSA:3.30.160.100 1 104 3.1E-7 T 13-10-2018 IPR036567 Ribosome hibernation promotion factor-like CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 SUPERFAMILY SSF53850 92 290 3.46E-37 T 13-10-2018 CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.9E-7 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.4E-15 T 13-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 Pfam PF03466 LysR substrate binding domain 91 280 1.1E-36 T 13-10-2018 IPR005119 LysR, substrate-binding CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 Gene3D G3DSA:3.40.190.10 92 300 4.5E-82 T 13-10-2018 CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 Gene3D G3DSA:3.40.190.10 167 266 4.5E-82 T 13-10-2018 CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 Gene3D G3DSA:1.10.10.10 1 86 5.2E-19 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_10155 b5d0421a3169b35e791c11702c87b629 307 SUPERFAMILY SSF46785 2 113 6.49E-16 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_12160 d5169a7f4667466e606f7d555556f49d 119 Gene3D G3DSA:3.30.450.30 4 118 9.4E-6 T 13-10-2018 CDG55_12160 d5169a7f4667466e606f7d555556f49d 119 SUPERFAMILY SSF103196 5 116 3.4E-6 T 13-10-2018 CDG55_08040 99554dd2a6749478f0d656b06f7fad88 211 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 206 26.674 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CDG55_08040 99554dd2a6749478f0d656b06f7fad88 211 Gene3D G3DSA:3.40.50.150 4 211 1.7E-62 T 13-10-2018 CDG55_08040 99554dd2a6749478f0d656b06f7fad88 211 Pfam PF02527 rRNA small subunit methyltransferase G 26 204 1.4E-51 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CDG55_08040 99554dd2a6749478f0d656b06f7fad88 211 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 28 208 6.3E-49 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CDG55_08040 99554dd2a6749478f0d656b06f7fad88 211 SUPERFAMILY SSF53335 7 210 5.42E-34 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_08040 99554dd2a6749478f0d656b06f7fad88 211 PIRSF PIRSF003078 1 211 1.8E-51 T 13-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 CDG55_06305 089c97f6d47e7692108ba8971fff8c7a 200 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 4.8E-29 T 13-10-2018 IPR001498 Impact, N-terminal CDG55_06305 089c97f6d47e7692108ba8971fff8c7a 200 Gene3D G3DSA:3.30.230.30 1 125 8.3E-45 T 13-10-2018 IPR036956 Impact, N-terminal domain superfamily CDG55_06305 089c97f6d47e7692108ba8971fff8c7a 200 SUPERFAMILY SSF54980 129 195 5.47E-7 T 13-10-2018 IPR035647 EF-G domain III/V-like CDG55_06305 089c97f6d47e7692108ba8971fff8c7a 200 SUPERFAMILY SSF54211 4 122 3.03E-39 T 13-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold CDG55_00985 894e1f0ad6ba9ed50160bb983b4c7ca4 294 Gene3D G3DSA:3.30.200.20 4 92 1.6E-7 T 13-10-2018 CDG55_00985 894e1f0ad6ba9ed50160bb983b4c7ca4 294 SUPERFAMILY SSF56112 31 242 1.11E-22 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_00985 894e1f0ad6ba9ed50160bb983b4c7ca4 294 Gene3D G3DSA:3.90.1200.10 103 292 1.5E-25 T 13-10-2018 CDG55_00985 894e1f0ad6ba9ed50160bb983b4c7ca4 294 Pfam PF01636 Phosphotransferase enzyme family 27 245 2.3E-21 T 13-10-2018 IPR002575 Aminoglycoside phosphotransferase CDG55_06020 a5b3654b229bb291b50250d290d91f7a 120 SUPERFAMILY SSF51182 35 118 6.99E-10 T 13-10-2018 IPR011051 RmlC-like cupin domain superfamily CDG55_06020 a5b3654b229bb291b50250d290d91f7a 120 Gene3D G3DSA:2.60.120.10 20 119 2.6E-19 T 13-10-2018 IPR014710 RmlC-like jelly roll fold CDG55_06020 a5b3654b229bb291b50250d290d91f7a 120 Pfam PF05899 Protein of unknown function (DUF861) 46 115 4.5E-11 T 13-10-2018 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 CDG55_00065 447df4299e304adfaa7b2003f22288d1 60 Gene3D G3DSA:3.30.920.30 1 59 3.0E-29 T 13-10-2018 IPR038570 HicA superfamily CDG55_00065 447df4299e304adfaa7b2003f22288d1 60 SUPERFAMILY SSF54786 1 59 2.24E-17 T 13-10-2018 CDG55_00065 447df4299e304adfaa7b2003f22288d1 60 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 3 59 4.5E-22 T 13-10-2018 IPR012933 HicA mRNA interferase family GO:0003729 CDG55_14725 4e38fe99c6f16e81224dc130842888f6 291 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 267 2.5E-103 T 13-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 CDG55_14725 4e38fe99c6f16e81224dc130842888f6 291 SUPERFAMILY SSF53448 3 279 1.96E-54 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_14725 4e38fe99c6f16e81224dc130842888f6 291 Gene3D G3DSA:3.90.550.10 1 291 7.1E-78 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_14725 4e38fe99c6f16e81224dc130842888f6 291 Pfam PF00483 Nucleotidyl transferase 5 266 1.3E-23 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDG55_14800 2f8b568c80fc2fecb507634c643a606d 352 Pfam PF07282 Putative transposase DNA-binding domain 267 338 9.9E-22 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal CDG55_14800 2f8b568c80fc2fecb507634c643a606d 352 TIGRFAM TIGR01766 tspaseT_teng_C: transposase, IS605 OrfB family 222 293 1.6E-10 T 13-10-2018 IPR010095 Transposase IS605, OrfB, C-terminal CDG55_14800 2f8b568c80fc2fecb507634c643a606d 352 Pfam PF01385 Probable transposase 157 254 7.0E-11 T 13-10-2018 IPR001959 Probable transposase, IS891/IS1136/IS1341 CDG55_07410 189b28af821f68406be2871e7b6aa31a 272 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 1 270 41.271 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CDG55_07410 189b28af821f68406be2871e7b6aa31a 272 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 20 266 9.4E-87 T 13-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 CDG55_07410 189b28af821f68406be2871e7b6aa31a 272 Pfam PF13847 Methyltransferase domain 105 246 2.2E-17 T 13-10-2018 IPR025714 Methyltransferase domain CDG55_07410 189b28af821f68406be2871e7b6aa31a 272 SUPERFAMILY SSF53335 15 267 2.22E-55 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_07410 189b28af821f68406be2871e7b6aa31a 272 Gene3D G3DSA:3.40.50.150 84 270 2.8E-59 T 13-10-2018 CDG55_07410 189b28af821f68406be2871e7b6aa31a 272 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 16 269 5.4E-73 T 13-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 CDG55_07410 189b28af821f68406be2871e7b6aa31a 272 Gene3D G3DSA:1.10.8.10 2 81 4.7E-16 T 13-10-2018 CDG55_14820 ca26d75c7bd80201c1ac0c5bdb3e9091 235 Gene3D G3DSA:3.10.50.40 97 235 2.7E-59 T 13-10-2018 CDG55_14820 ca26d75c7bd80201c1ac0c5bdb3e9091 235 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 145 232 7.2E-32 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CDG55_14820 ca26d75c7bd80201c1ac0c5bdb3e9091 235 SUPERFAMILY SSF54534 43 235 9.82E-61 T 13-10-2018 CDG55_14820 ca26d75c7bd80201c1ac0c5bdb3e9091 235 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 38 137 1.1E-22 T 13-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 CDG55_14820 ca26d75c7bd80201c1ac0c5bdb3e9091 235 Gene3D G3DSA:1.10.287.460 42 96 8.2E-11 T 13-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 CDG55_14835 17f10b7468669aa7eab43d34787e27ef 192 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 32 172 2.4E-26 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CDG55_14835 17f10b7468669aa7eab43d34787e27ef 192 Gene3D G3DSA:3.40.80.10 8 191 6.9E-57 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CDG55_14835 17f10b7468669aa7eab43d34787e27ef 192 SUPERFAMILY SSF55846 10 186 7.59E-62 T 13-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CDG55_14835 17f10b7468669aa7eab43d34787e27ef 192 SMART SM00644 22 172 3.6E-43 T 13-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 CDG55_09595 612c66457aa660cb1c571cf101d9cd68 238 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 238 87.935 T 13-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 CDG55_09595 612c66457aa660cb1c571cf101d9cd68 238 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 4 227 6.9E-71 T 13-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 CDG55_09595 612c66457aa660cb1c571cf101d9cd68 238 Pfam PF00149 Calcineurin-like phosphoesterase 4 197 1.4E-5 T 13-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 CDG55_09595 612c66457aa660cb1c571cf101d9cd68 238 SUPERFAMILY SSF56300 3 227 3.17E-27 T 13-10-2018 CDG55_12715 0a0f7f5f5e710a872ffe9c649fef0395 149 SUPERFAMILY SSF47188 2 122 1.27E-30 T 13-10-2018 IPR035938 Hemerythrin-like superfamily CDG55_12715 0a0f7f5f5e710a872ffe9c649fef0395 149 Gene3D G3DSA:1.20.120.50 1 125 1.2E-34 T 13-10-2018 IPR035938 Hemerythrin-like superfamily CDG55_12715 0a0f7f5f5e710a872ffe9c649fef0395 149 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 2 122 7.1E-35 T 13-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 CDG55_12715 0a0f7f5f5e710a872ffe9c649fef0395 149 Pfam PF01814 Hemerythrin HHE cation binding domain 10 123 3.6E-12 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CDG55_11680 88d4e525632dc5580d79f3625a8cd0b2 141 Pfam PF13673 Acetyltransferase (GNAT) domain 41 138 3.1E-23 T 13-10-2018 IPR000182 GNAT domain CDG55_11680 88d4e525632dc5580d79f3625a8cd0b2 141 SUPERFAMILY SSF55729 5 139 1.55E-35 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_11680 88d4e525632dc5580d79f3625a8cd0b2 141 Gene3D G3DSA:3.40.630.30 9 141 4.0E-38 T 13-10-2018 CDG55_08630 d734569e5a1b501add03eac46153b6f2 363 Gene3D G3DSA:3.60.150.10 1 363 6.6E-160 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDG55_08630 d734569e5a1b501add03eac46153b6f2 363 PIRSF PIRSF001456 3 359 3.9E-134 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDG55_08630 d734569e5a1b501add03eac46153b6f2 363 Pfam PF01264 Chorismate synthase 10 345 1.8E-136 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDG55_08630 d734569e5a1b501add03eac46153b6f2 363 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 36.065 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDG55_08630 d734569e5a1b501add03eac46153b6f2 363 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 1.6E-133 T 13-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDG55_08630 d734569e5a1b501add03eac46153b6f2 363 SUPERFAMILY SSF103263 4 352 1.06E-141 T 13-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 CDG55_13430 aeef2134e7c8d6594a15d09e8a30728d 552 Gene3D G3DSA:3.40.50.300 209 546 1.9E-43 T 13-10-2018 CDG55_13430 aeef2134e7c8d6594a15d09e8a30728d 552 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 504 3.0E-19 T 13-10-2018 IPR003395 RecF/RecN/SMC, N-terminal CDG55_13430 aeef2134e7c8d6594a15d09e8a30728d 552 Gene3D G3DSA:3.40.50.300 1 201 6.1E-22 T 13-10-2018 CDG55_13430 aeef2134e7c8d6594a15d09e8a30728d 552 PIRSF PIRSF003128 1 550 2.9E-133 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CDG55_13430 aeef2134e7c8d6594a15d09e8a30728d 552 SUPERFAMILY SSF52540 1 504 1.94E-55 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13430 aeef2134e7c8d6594a15d09e8a30728d 552 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 544 9.1E-135 T 13-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 Gene3D G3DSA:1.10.240.10 188 302 4.4E-103 T 13-10-2018 CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 Gene3D G3DSA:3.40.50.620 10 329 4.4E-103 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 7 334 1.1E-69 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 Pfam PF00579 tRNA synthetases class I (W and Y) 6 288 1.2E-54 T 13-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 SUPERFAMILY SSF52374 9 334 1.1E-77 T 13-10-2018 CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 71 90 1.5E-21 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 149 170 1.5E-21 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 20 36 1.5E-21 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDG55_10855 e92ba21b86872ccd6defa06cfae4fd55 337 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 201 211 1.5E-21 T 13-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 SMART SM00226 4 141 3.6E-57 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 76 91 1.7E-17 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 113 128 1.7E-17 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 6 23 1.7E-17 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 98 111 1.7E-17 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 42 58 1.7E-17 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 Gene3D G3DSA:3.40.50.2300 1 142 8.2E-46 T 13-10-2018 CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 6 138 3.0E-38 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CDG55_14810 1a3be10224a8a5e5770ee11615362b2d 142 SUPERFAMILY SSF52788 2 142 4.06E-41 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CDG55_13045 738c2c9430696be9ea43887c11a532eb 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 121 17.837 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CDG55_13045 738c2c9430696be9ea43887c11a532eb 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 116 2.9E-23 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CDG55_13045 738c2c9430696be9ea43887c11a532eb 126 TIGRFAM TIGR00494 crcB: protein CrcB 6 119 4.1E-31 T 13-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 CDG55_12025 6793c661cc2a6d6fa48d92fa446886a4 189 Gene3D G3DSA:1.20.1440.20 18 182 6.4E-30 T 13-10-2018 IPR023353 LemA-like domain superfamily CDG55_12025 6793c661cc2a6d6fa48d92fa446886a4 189 Pfam PF04011 LemA family 6 168 6.7E-34 T 13-10-2018 IPR007156 LemA CDG55_12025 6793c661cc2a6d6fa48d92fa446886a4 189 SUPERFAMILY SSF140478 26 165 2.09E-32 T 13-10-2018 IPR023353 LemA-like domain superfamily CDG55_09180 72a5990cd38164b06cef89ad4eac84b6 400 Gene3D G3DSA:1.20.1250.20 205 397 8.8E-20 T 13-10-2018 CDG55_09180 72a5990cd38164b06cef89ad4eac84b6 400 SUPERFAMILY SSF103473 8 386 2.22E-60 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_09180 72a5990cd38164b06cef89ad4eac84b6 400 Gene3D G3DSA:1.20.1250.20 11 200 7.1E-28 T 13-10-2018 CDG55_09180 72a5990cd38164b06cef89ad4eac84b6 400 Pfam PF07690 Major Facilitator Superfamily 19 329 2.8E-34 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_01920 4d515e0dabfa03ca32336b32f1096cab 189 Pfam PF05656 Protein of unknown function (DUF805) 19 136 8.0E-18 T 13-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 CDG55_07085 5064e0c808f6a1457327a8bd39483869 142 PIRSF PIRSF016821 10 135 1.2E-40 T 13-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 CDG55_07085 5064e0c808f6a1457327a8bd39483869 142 SMART SM00363 13 76 1.3E-7 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_07085 5064e0c808f6a1457327a8bd39483869 142 Gene3D G3DSA:3.10.290.10 6 112 8.2E-36 T 13-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 CDG55_07085 5064e0c808f6a1457327a8bd39483869 142 SUPERFAMILY SSF55174 10 108 4.84E-27 T 13-10-2018 CDG55_07085 5064e0c808f6a1457327a8bd39483869 142 Pfam PF01479 S4 domain 13 58 1.6E-10 T 13-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_05625 f3dd6da318dc246f9be46072c54b4a0e 327 Pfam PF00089 Trypsin 21 280 3.8E-44 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 CDG55_05625 f3dd6da318dc246f9be46072c54b4a0e 327 Gene3D G3DSA:2.40.10.10 13 284 4.3E-58 T 13-10-2018 CDG55_05625 f3dd6da318dc246f9be46072c54b4a0e 327 SMART SM00020 20 280 1.2E-49 T 13-10-2018 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 CDG55_05625 f3dd6da318dc246f9be46072c54b4a0e 327 SUPERFAMILY SSF50494 13 284 1.41E-60 T 13-10-2018 IPR009003 Peptidase S1, PA clan CDG55_05625 f3dd6da318dc246f9be46072c54b4a0e 327 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 52 67 7.0E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 CDG55_05625 f3dd6da318dc246f9be46072c54b4a0e 327 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 111 125 7.0E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 CDG55_05625 f3dd6da318dc246f9be46072c54b4a0e 327 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 230 242 7.0E-12 T 13-10-2018 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 CDG55_09290 a37d5e8d72ffba0635ddc7ef70b61c5c 202 SUPERFAMILY SSF46689 5 87 3.69E-14 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_09290 a37d5e8d72ffba0635ddc7ef70b61c5c 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 57 5.9E-10 T 13-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 CDG55_09290 a37d5e8d72ffba0635ddc7ef70b61c5c 202 Pfam PF16925 Bacterial transcriptional repressor C-terminal 84 190 1.3E-13 T 13-10-2018 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal CDG55_09290 a37d5e8d72ffba0635ddc7ef70b61c5c 202 SUPERFAMILY SSF48498 83 197 5.48E-22 T 13-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CDG55_09290 a37d5e8d72ffba0635ddc7ef70b61c5c 202 Gene3D G3DSA:1.10.357.10 2 202 4.8E-70 T 13-10-2018 CDG55_03345 af21381e1675b65caf74f1c51db24229 213 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 7 198 1.5E-44 T 13-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 CDG55_03345 af21381e1675b65caf74f1c51db24229 213 SUPERFAMILY SSF56529 3 196 4.45E-57 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CDG55_03345 af21381e1675b65caf74f1c51db24229 213 Gene3D G3DSA:3.90.850.10 1 210 5.2E-61 T 13-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 CDG55_10265 afa54a4b19fe6c952b8ced2812c19aa2 463 Gene3D G3DSA:3.30.1150.10 364 461 5.7E-15 T 13-10-2018 CDG55_10265 afa54a4b19fe6c952b8ced2812c19aa2 463 TIGRFAM TIGR02794 tolA_full: protein TolA 14 256 6.8E-21 T 13-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 CDG55_10265 afa54a4b19fe6c952b8ced2812c19aa2 463 TIGRFAM TIGR02794 tolA_full: protein TolA 252 461 4.7E-26 T 13-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 CDG55_10265 afa54a4b19fe6c952b8ced2812c19aa2 463 Pfam PF13103 TonB C terminal 386 446 4.5E-6 T 13-10-2018 CDG55_10265 afa54a4b19fe6c952b8ced2812c19aa2 463 SUPERFAMILY SSF74653 384 461 5.49E-11 T 13-10-2018 CDG55_02585 fa3a34a520ea2b9f53c11952d5556307 448 Pfam PF00501 AMP-binding enzyme 113 361 7.8E-45 T 13-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 CDG55_02585 fa3a34a520ea2b9f53c11952d5556307 448 SUPERFAMILY SSF56801 9 444 1.16E-72 T 13-10-2018 CDG55_02585 fa3a34a520ea2b9f53c11952d5556307 448 Gene3D G3DSA:3.30.300.30 358 447 3.7E-8 T 13-10-2018 CDG55_02585 fa3a34a520ea2b9f53c11952d5556307 448 Gene3D G3DSA:3.40.50.12780 3 354 2.8E-62 T 13-10-2018 CDG55_14450 42e112297287157c28e078626b5d5d52 393 Gene3D G3DSA:1.10.150.130 85 183 4.7E-10 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_14450 42e112297287157c28e078626b5d5d52 393 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 85 141 4.0E-10 T 13-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 CDG55_14450 42e112297287157c28e078626b5d5d52 393 Gene3D G3DSA:1.10.443.10 184 381 3.8E-39 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_14450 42e112297287157c28e078626b5d5d52 393 Pfam PF00589 Phage integrase family 201 364 2.4E-17 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_14450 42e112297287157c28e078626b5d5d52 393 Pfam PF12167 Arm DNA-binding domain 1 64 3.4E-21 T 13-10-2018 IPR022000 Min27-like integrase, DNA-binding domain CDG55_14450 42e112297287157c28e078626b5d5d52 393 SUPERFAMILY SSF56349 85 373 9.71E-53 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 SUPERFAMILY SSF52440 4 114 1.73E-28 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 SUPERFAMILY SSF51246 328 398 3.77E-18 T 13-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 Gene3D G3DSA:3.40.50.20 3 124 3.8E-49 T 13-10-2018 CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 9 399 50.168 T 13-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 SUPERFAMILY SSF56059 115 321 6.89E-55 T 13-10-2018 CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 15 398 2.9E-168 T 13-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 Gene3D G3DSA:3.30.1490.20 125 198 3.5E-31 T 13-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 Pfam PF02222 ATP-grasp domain 125 303 4.6E-51 T 13-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CDG55_09430 d41c819ba7fa31044aa8562dc4ec6fde 402 Gene3D G3DSA:3.30.470.20 199 402 8.0E-60 T 13-10-2018 CDG55_00480 a5469346548da2726ba8183afb4e7813 234 SUPERFAMILY SSF53098 72 191 1.21E-7 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_00480 a5469346548da2726ba8183afb4e7813 234 Pfam PF13610 DDE domain 73 212 3.3E-50 T 13-10-2018 IPR032874 DDE domain CDG55_09185 7bfa260bd00f6effcc242c4c659b3104 206 PIRSF PIRSF020606 1 201 8.2E-75 T 13-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 CDG55_09185 7bfa260bd00f6effcc242c4c659b3104 206 Pfam PF09997 Predicted membrane protein (DUF2238) 39 179 7.9E-55 T 13-10-2018 IPR014509 Uncharacterised conserved protein UCP020606 CDG55_12955 525f2854c7df9e40d9c5fe499a490617 135 Pfam PF13781 DoxX-like family 20 118 4.7E-17 T 13-10-2018 IPR025695 DoxX-like family CDG55_12185 196046148d3f9b92f7ddeff6fdb765f6 274 Gene3D G3DSA:3.90.226.10 11 216 8.8E-63 T 13-10-2018 CDG55_12185 196046148d3f9b92f7ddeff6fdb765f6 274 SUPERFAMILY SSF52096 11 272 1.36E-68 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_12185 196046148d3f9b92f7ddeff6fdb765f6 274 Pfam PF00378 Enoyl-CoA hydratase/isomerase 16 274 7.2E-50 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CDG55_12185 196046148d3f9b92f7ddeff6fdb765f6 274 Gene3D G3DSA:1.10.12.10 217 274 9.4E-24 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 SUPERFAMILY SSF56655 1 267 3.27E-75 T 13-10-2018 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 Gene3D G3DSA:3.40.190.80 145 272 1.4E-32 T 13-10-2018 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 1.1E-49 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 1.1E-49 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 218 242 1.1E-49 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 187 208 1.1E-49 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 134 157 1.1E-49 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 PRINTS PR00377 Inositol monophosphatase superfamily signature 85 101 1.1E-49 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 Pfam PF00459 Inositol monophosphatase family 2 263 7.4E-65 T 13-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 CDG55_02980 15b1cfb050cdecd62cb84e93ec7210ac 276 Gene3D G3DSA:3.30.540.10 1 144 3.6E-45 T 13-10-2018 CDG55_00265 fe5b31c023dcc8acbe00cb02a0e691d8 116 SMART SM00530 10 65 9.5E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_00265 fe5b31c023dcc8acbe00cb02a0e691d8 116 SUPERFAMILY SSF47413 2 65 4.16E-12 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_00265 fe5b31c023dcc8acbe00cb02a0e691d8 116 Pfam PF12844 Helix-turn-helix domain 8 67 2.4E-8 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_00265 fe5b31c023dcc8acbe00cb02a0e691d8 116 Gene3D G3DSA:1.10.260.40 5 87 1.1E-11 T 13-10-2018 CDG55_03600 1e344fd8e84ff35a1ae2def217035d3a 164 SUPERFAMILY SSF54637 25 163 1.56E-21 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_03600 1e344fd8e84ff35a1ae2def217035d3a 164 Pfam PF14539 Domain of unknown function (DUF4442) 24 156 7.0E-34 T 13-10-2018 IPR027961 Protein of unknown function DUF4442 CDG55_03600 1e344fd8e84ff35a1ae2def217035d3a 164 Gene3D G3DSA:3.10.129.10 9 158 2.8E-37 T 13-10-2018 CDG55_07515 ec6f3cb94d4dca724a668d45da9f003a 203 SUPERFAMILY SSF47616 81 199 2.09E-21 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CDG55_07515 ec6f3cb94d4dca724a668d45da9f003a 203 SUPERFAMILY SSF52833 1 84 5.04E-17 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_07515 ec6f3cb94d4dca724a668d45da9f003a 203 Gene3D G3DSA:1.20.1050.10 83 189 4.5E-59 T 13-10-2018 CDG55_07515 ec6f3cb94d4dca724a668d45da9f003a 203 Gene3D G3DSA:3.40.30.10 3 195 4.5E-59 T 13-10-2018 CDG55_07515 ec6f3cb94d4dca724a668d45da9f003a 203 Pfam PF00043 Glutathione S-transferase, C-terminal domain 120 189 7.1E-8 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CDG55_07515 ec6f3cb94d4dca724a668d45da9f003a 203 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 75 9.0E-9 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 Pfam PF00675 Insulinase (Peptidase family M16) 45 188 3.7E-17 T 13-10-2018 IPR011765 Peptidase M16, N-terminal CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 SUPERFAMILY SSF63411 496 718 5.76E-32 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 Pfam PF05193 Peptidase M16 inactive domain 200 372 2.2E-14 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 Pfam PF05193 Peptidase M16 inactive domain 669 846 1.5E-26 T 13-10-2018 IPR007863 Peptidase M16, C-terminal CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 Gene3D G3DSA:3.30.830.10 29 252 4.6E-57 T 13-10-2018 CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 Gene3D G3DSA:3.30.830.10 729 916 1.9E-33 T 13-10-2018 CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 Gene3D G3DSA:3.30.830.10 501 714 2.2E-26 T 13-10-2018 CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 SUPERFAMILY SSF63411 265 442 8.43E-10 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 Gene3D G3DSA:3.30.830.10 260 455 1.3E-16 T 13-10-2018 CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 SUPERFAMILY SSF63411 749 918 5.33E-26 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDG55_05590 541992bc1c8a298f30f6e84a00b3a8a1 922 SUPERFAMILY SSF63411 31 246 8.67E-52 T 13-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 CDG55_03095 a5eb1010f5224eedabe7a8ff0e06fe10 397 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 394 2.0E-71 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDG55_03095 a5eb1010f5224eedabe7a8ff0e06fe10 397 SUPERFAMILY SSF53383 27 395 3.31E-71 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_03095 a5eb1010f5224eedabe7a8ff0e06fe10 397 Gene3D G3DSA:3.90.1150.10 261 397 4.4E-28 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_03095 a5eb1010f5224eedabe7a8ff0e06fe10 397 Gene3D G3DSA:3.40.640.10 2 258 1.2E-50 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_03095 a5eb1010f5224eedabe7a8ff0e06fe10 397 PIRSF PIRSF001434 1 397 1.4E-100 T 13-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 CDG55_01985 5fd4deae7af931e79e40171d71f2caaa 224 SUPERFAMILY SSF48613 1 213 8.16E-66 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 CDG55_01985 5fd4deae7af931e79e40171d71f2caaa 224 Gene3D G3DSA:1.20.910.10 1 221 1.6E-65 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 CDG55_01985 5fd4deae7af931e79e40171d71f2caaa 224 Pfam PF03070 TENA/THI-4/PQQC family 14 214 1.6E-34 T 13-10-2018 IPR004305 Thiaminase-2/PQQC CDG55_01985 5fd4deae7af931e79e40171d71f2caaa 224 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 15 214 8.6E-44 T 13-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 CDG55_14660 7c2786f92f821621c50098a41294ad7f 192 Pfam PF13548 Domain of unknown function (DUF4126) 7 179 1.7E-48 T 13-10-2018 IPR025196 Domain of unknown function DUF4126 CDG55_08070 79cd1bd186708213a82336172fae6d58 335 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 24 327 1.7E-69 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 CDG55_08070 79cd1bd186708213a82336172fae6d58 335 SUPERFAMILY SSF52540 53 164 2.1E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08070 79cd1bd186708213a82336172fae6d58 335 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 6 328 33.971 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 CDG55_08070 79cd1bd186708213a82336172fae6d58 335 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 17 328 6.5E-99 T 13-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 CDG55_11405 ee594eb4d14f60032b891c9ae0635877 261 Pfam PF02698 DUF218 domain 105 250 3.0E-28 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CDG55_11405 ee594eb4d14f60032b891c9ae0635877 261 Gene3D G3DSA:3.40.50.620 148 233 1.4E-9 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_11410 ba95d3ef02a9916f2dac888bba409a3c 164 Pfam PF11042 Protein of unknown function (DUF2750) 34 131 3.0E-18 T 13-10-2018 IPR021284 Protein of unknown function DUF2750 CDG55_12655 12652e0643a69dc3be46a4ce629da29a 157 SUPERFAMILY SSF52788 1 135 3.92E-36 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CDG55_12655 12652e0643a69dc3be46a4ce629da29a 157 SMART SM00226 1 136 1.2E-33 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CDG55_12655 12652e0643a69dc3be46a4ce629da29a 157 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 134 1.1E-21 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CDG55_12655 12652e0643a69dc3be46a4ce629da29a 157 Gene3D G3DSA:3.40.50.2300 1 137 1.6E-36 T 13-10-2018 CDG55_00245 4dbf760818c690313f5ff5a5b588cecb 751 Pfam PF14457 Prokaryotic E2 family A 6 163 1.5E-50 T 13-10-2018 IPR032865 Prokaryotic E2 family A CDG55_00245 4dbf760818c690313f5ff5a5b588cecb 751 Gene3D G3DSA:3.40.50.720 358 584 8.3E-13 T 13-10-2018 CDG55_00245 4dbf760818c690313f5ff5a5b588cecb 751 Pfam PF00899 ThiF family 363 482 3.7E-12 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDG55_00245 4dbf760818c690313f5ff5a5b588cecb 751 SUPERFAMILY SSF69572 364 485 3.92E-11 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CDG55_00245 4dbf760818c690313f5ff5a5b588cecb 751 Gene3D G3DSA:3.40.140.10 621 739 3.9E-7 T 13-10-2018 CDG55_00245 4dbf760818c690313f5ff5a5b588cecb 751 Pfam PF14464 Prokaryotic homologs of the JAB domain 626 740 1.4E-12 T 13-10-2018 IPR028090 JAB domain, prokaryotic CDG55_11235 bf703e5b83a2af3d064ca6fd37114e38 187 SMART SM00014 56 166 2.4E-7 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDG55_11235 bf703e5b83a2af3d064ca6fd37114e38 187 Gene3D G3DSA:1.20.144.10 89 185 4.5E-15 T 13-10-2018 CDG55_11235 bf703e5b83a2af3d064ca6fd37114e38 187 SUPERFAMILY SSF48317 5 174 8.5E-31 T 13-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CDG55_11235 bf703e5b83a2af3d064ca6fd37114e38 187 Pfam PF01569 PAP2 superfamily 61 170 3.7E-17 T 13-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CDG55_09745 492006a50601bb06392f147709b7b16a 259 SUPERFAMILY SSF54001 95 240 1.37E-38 T 13-10-2018 IPR038765 Papain-like cysteine peptidase superfamily CDG55_09745 492006a50601bb06392f147709b7b16a 259 Gene3D G3DSA:3.10.620.30 74 247 3.2E-44 T 13-10-2018 CDG55_09745 492006a50601bb06392f147709b7b16a 259 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 8.8E-13 T 13-10-2018 IPR013589 Bacterial transglutaminase-like, N-terminal CDG55_09745 492006a50601bb06392f147709b7b16a 259 SMART SM00460 153 215 9.9E-15 T 13-10-2018 IPR002931 Transglutaminase-like CDG55_09745 492006a50601bb06392f147709b7b16a 259 Pfam PF01841 Transglutaminase-like superfamily 128 212 2.2E-19 T 13-10-2018 IPR002931 Transglutaminase-like CDG55_04095 ee12f4f2e6364892a21d84d02fdb9c22 449 Pfam PF00425 chorismate binding enzyme 178 433 6.2E-93 T 13-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal CDG55_04095 ee12f4f2e6364892a21d84d02fdb9c22 449 PRINTS PR00095 Anthranilate synthase component I signature 295 308 6.5E-9 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_04095 ee12f4f2e6364892a21d84d02fdb9c22 449 PRINTS PR00095 Anthranilate synthase component I signature 375 389 6.5E-9 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_04095 ee12f4f2e6364892a21d84d02fdb9c22 449 PRINTS PR00095 Anthranilate synthase component I signature 281 294 6.5E-9 T 13-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 CDG55_04095 ee12f4f2e6364892a21d84d02fdb9c22 449 Gene3D G3DSA:3.60.120.10 37 443 9.1E-127 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CDG55_04095 ee12f4f2e6364892a21d84d02fdb9c22 449 SUPERFAMILY SSF56322 58 442 4.58E-115 T 13-10-2018 IPR005801 ADC synthase GO:0009058 CDG55_07785 33cfd51fdd416a11e954fdb8a73f85f2 146 SUPERFAMILY SSF54637 2 144 3.58E-31 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_07785 33cfd51fdd416a11e954fdb8a73f85f2 146 Pfam PF01575 MaoC like domain 16 120 1.4E-11 T 13-10-2018 IPR002539 MaoC-like dehydratase domain CDG55_07785 33cfd51fdd416a11e954fdb8a73f85f2 146 Gene3D G3DSA:3.10.129.10 1 145 1.3E-39 T 13-10-2018 CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 4.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 4.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 4.0E-8 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 Pfam PF00106 short chain dehydrogenase 3 201 4.6E-38 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 7.0E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 7.0E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 7.0E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 7.0E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 7.0E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 SUPERFAMILY SSF51735 2 239 1.46E-55 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_03730 700eb67c444c0a2ac47dbfa24a22801f 273 Gene3D G3DSA:3.40.50.720 2 272 9.9E-69 T 13-10-2018 CDG55_13640 dffb47e033271cff98388eaa8b4d6198 291 Gene3D G3DSA:3.40.50.1820 1 290 3.7E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_13640 dffb47e033271cff98388eaa8b4d6198 291 Pfam PF00561 alpha/beta hydrolase fold 28 275 3.8E-15 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_13640 dffb47e033271cff98388eaa8b4d6198 291 PRINTS PR00412 Epoxide hydrolase signature 99 112 2.9E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CDG55_13640 dffb47e033271cff98388eaa8b4d6198 291 PRINTS PR00412 Epoxide hydrolase signature 263 285 2.9E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CDG55_13640 dffb47e033271cff98388eaa8b4d6198 291 PRINTS PR00412 Epoxide hydrolase signature 33 51 2.9E-5 T 13-10-2018 IPR000639 Epoxide hydrolase-like GO:0003824 CDG55_13640 dffb47e033271cff98388eaa8b4d6198 291 SUPERFAMILY SSF53474 6 288 7.69E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_12400 b71fcaa8157ddcda4037edf0e5327b30 206 Pfam PF01618 MotA/TolQ/ExbB proton channel family 58 172 2.1E-32 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CDG55_09640 a1a38055dca4357b1e199ce214ca989b 104 Pfam PF04221 RelB antitoxin 5 68 3.3E-12 T 13-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ CDG55_09640 a1a38055dca4357b1e199ce214ca989b 104 Gene3D G3DSA:1.10.1220.10 2 52 8.8E-14 T 13-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 CDG55_09640 a1a38055dca4357b1e199ce214ca989b 104 TIGRFAM TIGR02384 RelB_DinJ: addiction module antitoxin, RelB/DinJ family 2 71 9.9E-17 T 13-10-2018 IPR007337 RelB antitoxin/Antitoxin DinJ CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 Pfam PF00390 Malic enzyme, N-terminal domain 21 113 4.3E-20 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 Pfam PF00390 Malic enzyme, N-terminal domain 115 152 2.5E-6 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 SUPERFAMILY SSF53223 11 162 1.44E-52 T 13-10-2018 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 Pfam PF01515 Phosphate acetyl/butaryl transferase 426 748 1.1E-92 T 13-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 SMART SM00919 164 397 5.2E-127 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 Gene3D G3DSA:3.40.50.10380 1 161 7.9E-70 T 13-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 PIRSF PIRSF036684 1 756 0.0 T 13-10-2018 IPR012188 NAD(P)-dependent malic enzyme GO:0004470|GO:0006108|GO:0046872 KEGG: 00620+1.1.1.40|KEGG: 00710+1.1.1.40|MetaCyc: PWY-241|MetaCyc: PWY-7117 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 Gene3D G3DSA:3.40.50.10950 442 748 1.3E-92 T 13-10-2018 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 Gene3D G3DSA:3.40.50.10750 569 724 1.3E-92 T 13-10-2018 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 SUPERFAMILY SSF53659 426 751 6.17E-88 T 13-10-2018 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 SMART SM01274 19 152 1.9E-80 T 13-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 SUPERFAMILY SSF51735 164 449 2.37E-86 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 Pfam PF03949 Malic enzyme, NAD binding domain 166 357 2.9E-22 T 13-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 CDG55_09975 6c79ec72442734e3d34dc8e9aa590915 756 Gene3D G3DSA:3.40.50.720 162 441 1.7E-81 T 13-10-2018 CDG55_10000 c119a86dab2b748ae90616abbe90aa92 381 SUPERFAMILY SSF56925 146 381 6.54E-17 T 13-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel CDG55_10000 c119a86dab2b748ae90616abbe90aa92 381 Pfam PF03922 OmpW family 137 381 1.2E-16 T 13-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 Gene3D G3DSA:2.40.230.10 129 389 8.5E-89 T 13-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 Pfam PF02253 Phospholipase A1 123 385 4.5E-105 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 250 264 4.9E-36 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 220 239 4.9E-36 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 175 192 4.9E-36 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 197 213 4.9E-36 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 265 283 4.9E-36 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 300 318 4.9E-36 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 336 353 4.9E-36 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 PRINTS PR01486 Bacterial phospholipase A1 protein signature 358 378 4.9E-36 T 13-10-2018 IPR003187 Phospholipase A1 GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_08350 c750bc2e08d64bd8877a86a07118953a 389 SUPERFAMILY SSF56931 124 388 3.66E-91 T 13-10-2018 IPR036541 Phospholipase A1 superfamily GO:0004620|GO:0006629|GO:0016020 KEGG: 00564+3.1.1.32+3.1.1.4|KEGG: 00565+3.1.1.4|KEGG: 00590+3.1.1.4|KEGG: 00591+3.1.1.4|KEGG: 00592+3.1.1.32+3.1.1.4|MetaCyc: PWY-6803|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7417|MetaCyc: PWY-7783 CDG55_09880 ddc08df2b2e603ad38d2e55b8e4f70ce 110 Gene3D G3DSA:1.10.3730.20 1 110 1.5E-39 T 13-10-2018 CDG55_09880 ddc08df2b2e603ad38d2e55b8e4f70ce 110 Pfam PF00893 Small Multidrug Resistance protein 3 94 4.6E-31 T 13-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 CDG55_09880 ddc08df2b2e603ad38d2e55b8e4f70ce 110 SUPERFAMILY SSF103481 6 106 9.15E-22 T 13-10-2018 CDG55_11385 03259daaf847328f33cd1e162b6a83df 405 Pfam PF07690 Major Facilitator Superfamily 19 362 2.0E-37 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_11385 03259daaf847328f33cd1e162b6a83df 405 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 12 387 2.2E-85 T 13-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 CDG55_11385 03259daaf847328f33cd1e162b6a83df 405 Gene3D G3DSA:1.20.1720.10 15 395 1.7E-99 T 13-10-2018 CDG55_11385 03259daaf847328f33cd1e162b6a83df 405 SUPERFAMILY SSF103473 9 392 3.14E-55 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_06860 cc268ffea5c5e90b5f8cdb45d1f0691c 341 Gene3D G3DSA:3.30.420.10 172 332 6.4E-10 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_06860 cc268ffea5c5e90b5f8cdb45d1f0691c 341 Pfam PF00665 Integrase core domain 180 285 6.0E-15 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CDG55_06860 cc268ffea5c5e90b5f8cdb45d1f0691c 341 Pfam PF13936 Helix-turn-helix domain 7 51 7.6E-13 T 13-10-2018 IPR025246 Transposase IS30-like HTH domain CDG55_06860 cc268ffea5c5e90b5f8cdb45d1f0691c 341 SUPERFAMILY SSF53098 180 326 2.91E-27 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_01385 9b906af23e152d8226103bf29c3bf372 341 SMART SM00829 15 336 1.8E-8 T 13-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 CDG55_01385 9b906af23e152d8226103bf29c3bf372 341 Gene3D G3DSA:3.40.50.720 154 308 2.3E-111 T 13-10-2018 CDG55_01385 9b906af23e152d8226103bf29c3bf372 341 SUPERFAMILY SSF51735 143 306 6.35E-37 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_01385 9b906af23e152d8226103bf29c3bf372 341 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 138 1.3E-24 T 13-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 CDG55_01385 9b906af23e152d8226103bf29c3bf372 341 SUPERFAMILY SSF50129 7 165 2.2E-43 T 13-10-2018 IPR011032 GroES-like superfamily CDG55_01385 9b906af23e152d8226103bf29c3bf372 341 Gene3D G3DSA:3.90.180.10 20 336 2.3E-111 T 13-10-2018 CDG55_01385 9b906af23e152d8226103bf29c3bf372 341 Pfam PF00107 Zinc-binding dehydrogenase 180 302 1.5E-22 T 13-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 CDG55_10510 28f55c238d8c798a30701c4c56f7bf0e 310 Pfam PF13737 Transposase DDE domain 23 130 8.4E-42 T 13-10-2018 IPR025668 Transposase DDE domain CDG55_13400 b2a53da2f27bd5124c0a210eab4b02fb 408 Pfam PF00482 Type II secretion system (T2SS), protein F 74 197 7.2E-31 T 13-10-2018 IPR018076 Type II secretion system F domain CDG55_13400 b2a53da2f27bd5124c0a210eab4b02fb 408 Pfam PF00482 Type II secretion system (T2SS), protein F 279 400 9.7E-28 T 13-10-2018 IPR018076 Type II secretion system F domain CDG55_13400 b2a53da2f27bd5124c0a210eab4b02fb 408 Gene3D G3DSA:1.20.81.30 261 371 2.9E-26 T 13-10-2018 CDG55_13400 b2a53da2f27bd5124c0a210eab4b02fb 408 Gene3D G3DSA:1.20.81.30 61 176 5.3E-31 T 13-10-2018 CDG55_13400 b2a53da2f27bd5124c0a210eab4b02fb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 70 82 3.2E-18 T 13-10-2018 IPR003004 GspF/PilC family CDG55_13400 b2a53da2f27bd5124c0a210eab4b02fb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 169 197 3.2E-18 T 13-10-2018 IPR003004 GspF/PilC family CDG55_13400 b2a53da2f27bd5124c0a210eab4b02fb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 373 387 3.2E-18 T 13-10-2018 IPR003004 GspF/PilC family CDG55_13400 b2a53da2f27bd5124c0a210eab4b02fb 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 389 408 3.2E-18 T 13-10-2018 IPR003004 GspF/PilC family CDG55_08155 9da1d74cefe9b3672b4535440223dd22 100 PRINTS PR01727 Prokaryotic integration host factor signature 46 61 1.3E-18 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_08155 9da1d74cefe9b3672b4535440223dd22 100 PRINTS PR01727 Prokaryotic integration host factor signature 64 77 1.3E-18 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_08155 9da1d74cefe9b3672b4535440223dd22 100 PRINTS PR01727 Prokaryotic integration host factor signature 80 94 1.3E-18 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_08155 9da1d74cefe9b3672b4535440223dd22 100 Pfam PF00216 Bacterial DNA-binding protein 6 96 5.3E-28 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_08155 9da1d74cefe9b3672b4535440223dd22 100 SUPERFAMILY SSF47729 6 96 2.8E-28 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CDG55_08155 9da1d74cefe9b3672b4535440223dd22 100 Gene3D G3DSA:4.10.520.10 6 98 4.9E-32 T 13-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 CDG55_08155 9da1d74cefe9b3672b4535440223dd22 100 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 7 97 4.0E-40 T 13-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 CDG55_08155 9da1d74cefe9b3672b4535440223dd22 100 SMART SM00411 6 96 1.2E-39 T 13-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 CDG55_01285 d4686ed07df2b1c988d4ed3ce8a685af 103 SMART SM00248 49 78 1.8E-4 T 13-10-2018 IPR002110 Ankyrin repeat GO:0005515 CDG55_01285 d4686ed07df2b1c988d4ed3ce8a685af 103 Gene3D G3DSA:1.25.40.20 10 101 2.4E-19 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily CDG55_01285 d4686ed07df2b1c988d4ed3ce8a685af 103 SUPERFAMILY SSF48403 21 100 1.31E-17 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily CDG55_01285 d4686ed07df2b1c988d4ed3ce8a685af 103 Pfam PF12796 Ankyrin repeats (3 copies) 25 100 2.3E-11 T 13-10-2018 IPR020683 Ankyrin repeat-containing domain CDG55_08645 8f61fec48ff3681f155209f1bbf65e18 283 SUPERFAMILY SSF52540 16 256 1.06E-36 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08645 8f61fec48ff3681f155209f1bbf65e18 283 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 34 181 6.7E-14 T 13-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 CDG55_08645 8f61fec48ff3681f155209f1bbf65e18 283 SMART SM00382 30 188 8.1E-8 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_08645 8f61fec48ff3681f155209f1bbf65e18 283 Gene3D G3DSA:3.40.50.300 7 220 1.4E-27 T 13-10-2018 CDG55_00810 eb37b41fef56b18cd3192bb91cc6f971 130 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 3 129 5.3E-65 T 13-10-2018 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 CDG55_00810 eb37b41fef56b18cd3192bb91cc6f971 130 SUPERFAMILY SSF46955 3 125 3.44E-33 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_00810 eb37b41fef56b18cd3192bb91cc6f971 130 SMART SM00422 3 72 2.2E-24 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00810 eb37b41fef56b18cd3192bb91cc6f971 130 Pfam PF13411 MerR HTH family regulatory protein 4 70 9.0E-18 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00810 eb37b41fef56b18cd3192bb91cc6f971 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 39 59 5.6E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00810 eb37b41fef56b18cd3192bb91cc6f971 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 4 15 5.6E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00810 eb37b41fef56b18cd3192bb91cc6f971 130 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 15 28 5.6E-7 T 13-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 CDG55_00810 eb37b41fef56b18cd3192bb91cc6f971 130 Gene3D G3DSA:1.10.1660.10 1 119 8.6E-31 T 13-10-2018 CDG55_08180 fa94bc2556df297e843c247d56049c39 504 SUPERFAMILY SSF51905 13 417 1.3E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08180 fa94bc2556df297e843c247d56049c39 504 Gene3D G3DSA:3.50.50.60 302 501 1.6E-40 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08180 fa94bc2556df297e843c247d56049c39 504 Gene3D G3DSA:3.50.50.60 2 172 1.1E-54 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08180 fa94bc2556df297e843c247d56049c39 504 Pfam PF00743 Flavin-binding monooxygenase-like 12 344 3.0E-21 T 13-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 CDG55_04065 28daca09dd3220ccb4c4955fa8c8b820 83 Gene3D G3DSA:3.30.300.90 1 82 7.4E-25 T 13-10-2018 CDG55_04065 28daca09dd3220ccb4c4955fa8c8b820 83 Pfam PF01722 BolA-like protein 20 74 6.7E-12 T 13-10-2018 IPR002634 BolA protein CDG55_04065 28daca09dd3220ccb4c4955fa8c8b820 83 PIRSF PIRSF003113 1 82 5.5E-20 T 13-10-2018 IPR002634 BolA protein CDG55_04065 28daca09dd3220ccb4c4955fa8c8b820 83 SUPERFAMILY SSF82657 2 78 2.62E-22 T 13-10-2018 IPR036065 BolA-like superfamily CDG55_09145 6cfd717256dbc57a6d00e3f863d18444 170 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 134 149 2.2E-15 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CDG55_09145 6cfd717256dbc57a6d00e3f863d18444 170 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 115 128 2.2E-15 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CDG55_09145 6cfd717256dbc57a6d00e3f863d18444 170 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 9 26 2.2E-15 T 13-10-2018 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 CDG55_09145 6cfd717256dbc57a6d00e3f863d18444 170 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 9 160 5.2E-38 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CDG55_09145 6cfd717256dbc57a6d00e3f863d18444 170 SUPERFAMILY SSF52788 6 162 4.45E-47 T 13-10-2018 IPR036196 Phosphotyrosine protein phosphatase I superfamily CDG55_09145 6cfd717256dbc57a6d00e3f863d18444 170 SMART SM00226 7 162 2.5E-42 T 13-10-2018 IPR023485 Phosphotyrosine protein phosphatase I CDG55_09145 6cfd717256dbc57a6d00e3f863d18444 170 Gene3D G3DSA:3.40.50.2300 7 169 5.8E-52 T 13-10-2018 CDG55_14325 948738fcfbf5b87076f4de9518a0bb91 625 Gene3D G3DSA:1.25.40.10 302 509 5.1E-5 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_14325 948738fcfbf5b87076f4de9518a0bb91 625 Pfam PF01435 Peptidase family M48 105 335 3.1E-14 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CDG55_08445 8e8cb4b048491cd46cf5ae8b60dae286 346 PIRSF PIRSF001361 4 346 8.3E-134 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CDG55_08445 8e8cb4b048491cd46cf5ae8b60dae286 346 SUPERFAMILY SSF51569 20 344 1.36E-111 T 13-10-2018 CDG55_08445 8e8cb4b048491cd46cf5ae8b60dae286 346 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 20 344 4.4E-123 T 13-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 CDG55_08445 8e8cb4b048491cd46cf5ae8b60dae286 346 Pfam PF00793 DAHP synthetase I family 44 335 8.1E-78 T 13-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 CDG55_08445 8e8cb4b048491cd46cf5ae8b60dae286 346 Gene3D G3DSA:3.20.20.70 12 346 4.6E-134 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_05545 56fb03fd3f909ab05a7d289383ee52cc 160 SUPERFAMILY SSF54534 4 140 3.34E-39 T 13-10-2018 CDG55_05545 56fb03fd3f909ab05a7d289383ee52cc 160 Gene3D G3DSA:2.40.10.330 71 121 3.0E-57 T 13-10-2018 CDG55_05545 56fb03fd3f909ab05a7d289383ee52cc 160 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 136 8.7E-16 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CDG55_05545 56fb03fd3f909ab05a7d289383ee52cc 160 Gene3D G3DSA:3.10.50.40 4 154 3.0E-57 T 13-10-2018 CDG55_11105 31a1dccbdcd7ff8ac39e0c131ad18849 102 SUPERFAMILY SSF52540 42 93 3.44E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_11105 31a1dccbdcd7ff8ac39e0c131ad18849 102 Pfam PF07693 KAP family P-loop domain 25 97 2.8E-12 T 13-10-2018 IPR011646 KAP family P-loop domain CDG55_03845 97f4db4bd28ac8062ffd472792686744 283 Pfam PF03668 P-loop ATPase protein family 4 280 4.0E-86 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CDG55_03845 97f4db4bd28ac8062ffd472792686744 283 SUPERFAMILY SSF52540 3 157 2.19E-9 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03845 97f4db4bd28ac8062ffd472792686744 283 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 2 281 37.874 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CDG55_03845 97f4db4bd28ac8062ffd472792686744 283 PIRSF PIRSF005052 2 283 6.8E-109 T 13-10-2018 IPR005337 RapZ-like family GO:0005524 CDG55_04375 052487b13a18757246e7b673f0bbd7ec 532 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 8 507 4.8E-158 T 13-10-2018 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04375 052487b13a18757246e7b673f0bbd7ec 532 Pfam PF00361 Proton-conducting membrane transporter 137 436 1.2E-67 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04375 052487b13a18757246e7b673f0bbd7ec 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 178 202 4.9E-34 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04375 052487b13a18757246e7b673f0bbd7ec 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 143 162 4.9E-34 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04375 052487b13a18757246e7b673f0bbd7ec 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 395 421 4.9E-34 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04375 052487b13a18757246e7b673f0bbd7ec 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 343 362 4.9E-34 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04375 052487b13a18757246e7b673f0bbd7ec 532 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 255 279 4.9E-34 T 13-10-2018 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 Pfam PF13433 Periplasmic binding protein domain 49 426 3.7E-175 T 13-10-2018 CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 SUPERFAMILY SSF53822 48 425 4.71E-91 T 13-10-2018 IPR028082 Periplasmic binding protein-like I CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 Gene3D G3DSA:3.40.50.2300 164 412 1.5E-139 T 13-10-2018 CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 49 65 3.1E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 112 122 3.1E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 71 87 3.1E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 308 321 3.1E-5 T 13-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 Gene3D G3DSA:3.40.50.2300 51 393 1.5E-139 T 13-10-2018 CDG55_01655 fdeb762ac49e1e0d50a661c456cb6678 427 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 49 422 1.4E-181 T 13-10-2018 IPR017777 Urea ABC transporter, substrate-binding protein UrtA-like CDG55_14460 f5b42f75291f4524b5d209211b8220aa 180 Pfam PF07120 Protein of unknown function (DUF1376) 8 56 7.7E-9 T 13-10-2018 IPR010781 Protein of unknown function DUF1376 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 Pfam PF00375 Sodium:dicarboxylate symporter family 10 393 2.3E-63 T 13-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 Gene3D G3DSA:1.10.3860.10 2 398 2.0E-71 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 PRINTS PR00173 Glutamate-aspartate symporter signature 181 200 1.9E-15 T 13-10-2018 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 PRINTS PR00173 Glutamate-aspartate symporter signature 283 309 1.9E-15 T 13-10-2018 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 PRINTS PR00173 Glutamate-aspartate symporter signature 318 337 1.9E-15 T 13-10-2018 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 PRINTS PR00173 Glutamate-aspartate symporter signature 3 28 1.9E-15 T 13-10-2018 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 PRINTS PR00173 Glutamate-aspartate symporter signature 215 234 1.9E-15 T 13-10-2018 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 PRINTS PR00173 Glutamate-aspartate symporter signature 345 365 1.9E-15 T 13-10-2018 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 399 33.448 T 13-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 CDG55_07975 777bac8193a6711a218e0788030caf3e 399 SUPERFAMILY SSF118215 10 393 3.01E-89 T 13-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 CDG55_04195 8f2c2dd48f2be5a13219224e7d76e6cd 299 SUPERFAMILY SSF103515 199 299 2.88E-5 T 13-10-2018 IPR036709 Autotransporter beta-domain superfamily CDG55_04195 8f2c2dd48f2be5a13219224e7d76e6cd 299 Pfam PF05275 Copper resistance protein B precursor (CopB) 95 299 5.6E-49 T 13-10-2018 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 CDG55_00625 9a223a1891320e1f3fc97e816340419d 198 SUPERFAMILY SSF140931 47 193 1.31E-36 T 13-10-2018 IPR036597 Fido-like domain superfamily CDG55_00625 9a223a1891320e1f3fc97e816340419d 198 Pfam PF02661 Fic/DOC family 54 152 1.2E-18 T 13-10-2018 IPR003812 Fido domain CDG55_00625 9a223a1891320e1f3fc97e816340419d 198 Gene3D G3DSA:1.10.3290.10 7 197 1.9E-61 T 13-10-2018 IPR036597 Fido-like domain superfamily CDG55_04935 00c3e2c30919333de892e91490307d4b 592 Pfam PF14040 Deoxyribonuclease NucA/NucB 513 572 9.3E-8 T 13-10-2018 IPR029476 Deoxyribonuclease NucA/NucB CDG55_04935 00c3e2c30919333de892e91490307d4b 592 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 43 80 0.0015 T 13-10-2018 IPR006530 YD repeat CDG55_04935 00c3e2c30919333de892e91490307d4b 592 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 90 125 0.0013 T 13-10-2018 IPR006530 YD repeat CDG55_04935 00c3e2c30919333de892e91490307d4b 592 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 154 192 1.4E-5 T 13-10-2018 IPR006530 YD repeat CDG55_04935 00c3e2c30919333de892e91490307d4b 592 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 128 152 0.0024 T 13-10-2018 IPR006530 YD repeat CDG55_04935 00c3e2c30919333de892e91490307d4b 592 Gene3D G3DSA:3.90.930.1 99 240 1.4E-13 T 13-10-2018 CDG55_04935 00c3e2c30919333de892e91490307d4b 592 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 298 376 6.4E-19 T 13-10-2018 IPR022385 Rhs repeat-associated core GO:0097264 CDG55_04935 00c3e2c30919333de892e91490307d4b 592 Pfam PF05593 RHS Repeat 174 204 1.4E-4 T 13-10-2018 IPR031325 RHS repeat CDG55_04935 00c3e2c30919333de892e91490307d4b 592 Pfam PF05593 RHS Repeat 43 73 1.2E-4 T 13-10-2018 IPR031325 RHS repeat CDG55_04935 00c3e2c30919333de892e91490307d4b 592 Pfam PF05593 RHS Repeat 154 184 7.3E-6 T 13-10-2018 IPR031325 RHS repeat CDG55_04935 00c3e2c30919333de892e91490307d4b 592 Gene3D G3DSA:2.180.10.10 244 376 7.2E-20 T 13-10-2018 CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 Hamap MF_01974 Methionine aminopeptidase [map]. 10 265 40.152 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 Pfam PF00557 Metallopeptidase family M24 19 256 6.0E-48 T 13-10-2018 IPR000994 Peptidase M24 CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 82 95 1.2E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 176 188 1.2E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 105 121 1.2E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 PRINTS PR00599 Methionine aminopeptidase-1 signature 207 219 1.2E-22 T 13-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 SUPERFAMILY SSF55920 10 268 1.57E-84 T 13-10-2018 IPR036005 Creatinase/aminopeptidase-like CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 Gene3D G3DSA:3.90.230.10 10 273 4.1E-102 T 13-10-2018 CDG55_09995 e9ae3400741efd8f7cafefb5c969e42a 274 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 12 264 7.6E-95 T 13-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 CDG55_10745 ff37c6d0bdceee63c2962dc14c5746b2 197 Pfam PF13430 Domain of unknown function (DUF4112) 21 121 7.4E-20 T 13-10-2018 IPR025187 Protein of unknown function DUF4112 CDG55_12660 e5dc6ee01681b731ca24a6626e945eaa 106 SUPERFAMILY SSF46785 2 83 8.99E-26 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_12660 e5dc6ee01681b731ca24a6626e945eaa 106 Pfam PF01022 Bacterial regulatory protein, arsR family 12 58 2.2E-16 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_12660 e5dc6ee01681b731ca24a6626e945eaa 106 SMART SM00418 5 87 7.7E-30 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_12660 e5dc6ee01681b731ca24a6626e945eaa 106 Gene3D G3DSA:1.10.10.10 1 84 5.1E-28 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_12660 e5dc6ee01681b731ca24a6626e945eaa 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 4.6E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_12660 e5dc6ee01681b731ca24a6626e945eaa 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 4.6E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_12660 e5dc6ee01681b731ca24a6626e945eaa 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 4.6E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_12660 e5dc6ee01681b731ca24a6626e945eaa 106 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 38 4.6E-23 T 13-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 84 26.444 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 5.1E-39 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 Pfam PF01016 Ribosomal L27 protein 2 82 2.0E-38 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 SUPERFAMILY SSF110324 2 80 1.5E-33 T 13-10-2018 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 Gene3D G3DSA:2.40.50.100 21 84 5.7E-30 T 13-10-2018 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 PRINTS PR00063 Ribosomal protein L27 signature 4 28 1.4E-37 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 PRINTS PR00063 Ribosomal protein L27 signature 29 53 1.4E-37 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 PRINTS PR00063 Ribosomal protein L27 signature 54 78 1.4E-37 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_11040 f9c8a29abf987cb9c70865ac1685192e 84 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 3.0E-18 T 13-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 Pfam PF00334 Nucleoside diphosphate kinase 4 138 5.0E-56 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.5E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.5E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.5E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.5E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.5E-40 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.629 T 13-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 Gene3D G3DSA:3.30.70.141 1 143 1.4E-61 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 SUPERFAMILY SSF54919 1 141 3.14E-58 T 13-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12095 300fbaa5a77e65a233fbb21130a9c4a9 143 SMART SM00562 3 140 3.7E-89 T 13-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 Pfam PF13181 Tetratricopeptide repeat 43 69 0.016 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 Gene3D G3DSA:1.25.40.10 35 258 7.5E-42 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 Pfam PF13424 Tetratricopeptide repeat 109 176 6.0E-8 T 13-10-2018 CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 15 247 2.0E-66 T 13-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 SMART SM00028 145 178 4.6E-4 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 SMART SM00028 109 142 110.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 SMART SM00028 38 71 0.42 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 SMART SM00028 72 108 140.0 T 13-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 CDG55_12085 f1e0085c4378118b97bc2537fb1ce9c9 267 SUPERFAMILY SSF48452 40 207 7.21E-23 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_04420 a1e6f2c419b626545bd1bdacd8f85e28 520 Pfam PF05552 Conserved TM helix 26 57 4.9E-8 T 13-10-2018 IPR008910 Conserved TM helix CDG55_04420 a1e6f2c419b626545bd1bdacd8f85e28 520 Pfam PF05552 Conserved TM helix 192 236 4.6E-14 T 13-10-2018 IPR008910 Conserved TM helix CDG55_04420 a1e6f2c419b626545bd1bdacd8f85e28 520 Pfam PF05552 Conserved TM helix 102 149 3.5E-16 T 13-10-2018 IPR008910 Conserved TM helix CDG55_04420 a1e6f2c419b626545bd1bdacd8f85e28 520 Pfam PF05552 Conserved TM helix 283 331 7.3E-14 T 13-10-2018 IPR008910 Conserved TM helix CDG55_05865 7bca132d66524293bd4514dfdb6d134d 211 Pfam PF03695 Uncharacterised protein family (UPF0149) 19 164 1.1E-21 T 13-10-2018 IPR011978 Uncharacterised protein family UPF0149 CDG55_05865 7bca132d66524293bd4514dfdb6d134d 211 Gene3D G3DSA:1.20.120.740 2 173 3.4E-38 T 13-10-2018 CDG55_05865 7bca132d66524293bd4514dfdb6d134d 211 SUPERFAMILY SSF101327 7 167 5.89E-36 T 13-10-2018 IPR036255 YgfB-like superfamily CDG55_14175 e2a5fae165949188502866ce2353b46b 402 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 121 351 3.6E-29 T 13-10-2018 IPR018713 Domain of unknown function DUF2236 CDG55_00445 285ed34de1e34401121b61c709f5992d 270 SUPERFAMILY SSF56281 51 261 7.58E-31 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_00445 285ed34de1e34401121b61c709f5992d 270 Pfam PF00753 Metallo-beta-lactamase superfamily 72 232 5.4E-9 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_00445 285ed34de1e34401121b61c709f5992d 270 SMART SM00849 74 250 2.4E-13 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_00445 285ed34de1e34401121b61c709f5992d 270 Gene3D G3DSA:3.60.15.10 29 270 2.6E-97 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 PIRSF PIRSF000722 1 391 3.0E-132 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 SUPERFAMILY SSF53067 4 187 8.35E-60 T 13-10-2018 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 Gene3D G3DSA:3.30.420.40 1 186 2.1E-63 T 13-10-2018 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 PRINTS PR00471 Acetate kinase family signature 291 304 2.2E-40 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 PRINTS PR00471 Acetate kinase family signature 165 178 2.2E-40 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 PRINTS PR00471 Acetate kinase family signature 368 380 2.2E-40 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 PRINTS PR00471 Acetate kinase family signature 313 329 2.2E-40 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 PRINTS PR00471 Acetate kinase family signature 5 16 2.2E-40 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 PRINTS PR00471 Acetate kinase family signature 194 215 2.2E-40 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 Gene3D G3DSA:3.30.420.40 189 391 1.6E-69 T 13-10-2018 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 Hamap MF_00020 Acetate kinase [ackA]. 1 390 162.018 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 Pfam PF00871 Acetokinase family 5 381 9.6E-128 T 13-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 SUPERFAMILY SSF53067 148 387 4.09E-78 T 13-10-2018 CDG55_03465 0988a59a2d6457233e5cb6caabe8076c 391 TIGRFAM TIGR00016 ackA: acetate kinase 3 386 2.2E-131 T 13-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 Pfam PF02541 Ppx/GppA phosphatase family 25 308 1.4E-79 T 13-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 Gene3D G3DSA:3.30.420.40 12 303 1.3E-88 T 13-10-2018 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 SUPERFAMILY SSF53067 135 310 1.6E-46 T 13-10-2018 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 11 306 6.5E-97 T 13-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 PIRSF PIRSF001267 1 502 3.1E-197 T 13-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 SUPERFAMILY SSF53067 11 131 7.6E-35 T 13-10-2018 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 Gene3D G3DSA:3.30.420.150 115 295 1.3E-88 T 13-10-2018 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 SUPERFAMILY SSF109604 313 499 1.39E-46 T 13-10-2018 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 Gene3D G3DSA:1.10.3210.10 310 505 1.3E-57 T 13-10-2018 CDG55_03945 63a4e846eee6eae4d99bf41b728a91a8 506 Pfam PF01966 HD domain 336 417 1.2E-4 T 13-10-2018 IPR006674 HD domain CDG55_01700 9e583ca5913695cb31b439a3c27afaa5 255 Pfam PF13557 Putative MetA-pathway of phenol degradation 27 255 2.1E-18 T 13-10-2018 IPR025737 MetA-pathway of phenol degradation, putative CDG55_02830 a54fb8734772ac153e452de4a9469075 193 SUPERFAMILY SSF49329 53 193 6.41E-48 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDG55_02830 a54fb8734772ac153e452de4a9469075 193 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 56 192 2.0E-34 T 13-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDG55_02830 a54fb8734772ac153e452de4a9469075 193 Gene3D G3DSA:2.60.40.200 41 193 3.7E-52 T 13-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 CDG55_11560 db1b1c07f997db32fe7a3b12a9839315 96 SUPERFAMILY SSF54534 4 88 7.2E-26 T 13-10-2018 CDG55_11560 db1b1c07f997db32fe7a3b12a9839315 96 Gene3D G3DSA:3.10.50.40 1 91 9.9E-30 T 13-10-2018 CDG55_11560 db1b1c07f997db32fe7a3b12a9839315 96 Pfam PF00639 PPIC-type PPIASE domain 14 88 2.6E-19 T 13-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 CDG55_01145 e66dacad5bd95aa0ee351d4b90dbc0be 78 ProDom PD007968 PLASMID MERE URF-1 RESISTANCE MERCURY MERCURIC DELTA URF1 PRECURSOR TNIB 18 78 2.0E-27 T 13-10-2018 IPR007746 Broad mercury transporter MerE GO:0015097|GO:0015694|GO:0016020 CDG55_01145 e66dacad5bd95aa0ee351d4b90dbc0be 78 Pfam PF05052 MerE protein 1 75 1.7E-47 T 13-10-2018 IPR007746 Broad mercury transporter MerE GO:0015097|GO:0015694|GO:0016020 CDG55_09695 00f0110ce656225bc48a273899839ab5 109 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 13 108 2.2E-38 T 13-10-2018 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 CDG55_09695 00f0110ce656225bc48a273899839ab5 109 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 20 92 1.5E-16 T 13-10-2018 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 CDG55_11785 c7c47be554b43e02fed75c7218a2a0ce 219 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 8 215 40.146 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CDG55_11785 c7c47be554b43e02fed75c7218a2a0ce 219 SUPERFAMILY SSF51366 9 212 2.35E-59 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CDG55_11785 c7c47be554b43e02fed75c7218a2a0ce 219 Gene3D G3DSA:3.20.20.70 7 217 3.6E-66 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_11785 c7c47be554b43e02fed75c7218a2a0ce 219 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 10 210 4.7E-61 T 13-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 CDG55_06615 c518b0651389ecc20d80fcb5eb10f492 300 Pfam PF01882 Protein of unknown function DUF58 198 272 4.2E-9 T 13-10-2018 IPR002881 Domain of unknown function DUF58 CDG55_01300 a114109fea5ef0ddd1b910169809c5ea 492 SUPERFAMILY SSF161070 5 485 4.71E-135 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 CDG55_01300 a114109fea5ef0ddd1b910169809c5ea 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 13 34 5.5E-26 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CDG55_01300 a114109fea5ef0ddd1b910169809c5ea 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 86 112 5.5E-26 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CDG55_01300 a114109fea5ef0ddd1b910169809c5ea 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 391 411 5.5E-26 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CDG55_01300 a114109fea5ef0ddd1b910169809c5ea 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 313 332 5.5E-26 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CDG55_01300 a114109fea5ef0ddd1b910169809c5ea 492 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 42 61 5.5E-26 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CDG55_01300 a114109fea5ef0ddd1b910169809c5ea 492 Pfam PF00209 Sodium:neurotransmitter symporter family 124 481 2.2E-67 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CDG55_01300 a114109fea5ef0ddd1b910169809c5ea 492 Pfam PF00209 Sodium:neurotransmitter symporter family 5 121 3.3E-38 T 13-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 CDG55_02105 e07f7f9a1cf3c67180759ff0c51067f3 337 Pfam PF13395 HNH endonuclease 232 276 7.9E-8 T 13-10-2018 IPR003615 HNH nuclease CDG55_02105 e07f7f9a1cf3c67180759ff0c51067f3 337 SMART SM00507 219 272 4.1E-4 T 13-10-2018 IPR003615 HNH nuclease CDG55_02105 e07f7f9a1cf3c67180759ff0c51067f3 337 Gene3D G3DSA:3.30.40.60 211 300 1.3E-10 T 13-10-2018 CDG55_06545 398c1b5bc5f6f51c4b0be39cc9c58f31 276 Pfam PF01476 LysM domain 53 95 4.1E-12 T 13-10-2018 IPR018392 LysM domain CDG55_06545 398c1b5bc5f6f51c4b0be39cc9c58f31 276 Pfam PF01551 Peptidase family M23 178 270 1.4E-26 T 13-10-2018 IPR016047 Peptidase M23 CDG55_06545 398c1b5bc5f6f51c4b0be39cc9c58f31 276 SMART SM00257 52 96 2.6E-10 T 13-10-2018 IPR018392 LysM domain CDG55_06545 398c1b5bc5f6f51c4b0be39cc9c58f31 276 SUPERFAMILY SSF51261 52 274 1.83E-43 T 13-10-2018 IPR011055 Duplicated hybrid motif CDG55_06545 398c1b5bc5f6f51c4b0be39cc9c58f31 276 Gene3D G3DSA:3.10.350.10 47 110 1.4E-12 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_06545 398c1b5bc5f6f51c4b0be39cc9c58f31 276 Gene3D G3DSA:2.70.70.10 138 275 1.0E-30 T 13-10-2018 IPR011055 Duplicated hybrid motif CDG55_05160 0d84a79a7417bad5deaea94f2bc7b4a7 132 Gene3D G3DSA:3.30.1450.10 29 117 3.0E-22 T 13-10-2018 IPR037873 BamE-like CDG55_05160 0d84a79a7417bad5deaea94f2bc7b4a7 132 Pfam PF04355 SmpA / OmlA family 30 105 6.0E-24 T 13-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 CDG55_05160 0d84a79a7417bad5deaea94f2bc7b4a7 132 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 1 123 30.397 T 13-10-2018 IPR026592 Outer membrane protein assembly factor BamE CDG55_01215 74e05c8b19212c01d3a05af8a2fd51c6 333 Gene3D G3DSA:3.40.190.170 57 232 1.1E-7 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily CDG55_01215 74e05c8b19212c01d3a05af8a2fd51c6 333 SUPERFAMILY SSF53850 124 219 1.18E-5 T 13-10-2018 CDG55_03120 99b700f11375af1c521430cab4923dd1 106 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 20.505 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CDG55_03120 99b700f11375af1c521430cab4923dd1 106 Gene3D G3DSA:3.30.70.330 1 97 2.8E-32 T 13-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CDG55_03120 99b700f11375af1c521430cab4923dd1 106 Pfam PF00276 Ribosomal protein L23 9 93 2.2E-29 T 13-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 CDG55_03120 99b700f11375af1c521430cab4923dd1 106 SUPERFAMILY SSF54189 2 91 2.81E-30 T 13-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_14570 d4162c2421b8bbf0daf23935d19191f0 97 SUPERFAMILY SSF143011 1 84 1.1E-15 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CDG55_14570 d4162c2421b8bbf0daf23935d19191f0 97 Gene3D G3DSA:3.30.2310.20 1 96 8.7E-23 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CDG55_14570 d4162c2421b8bbf0daf23935d19191f0 97 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 8 84 2.8E-8 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDG55_14570 d4162c2421b8bbf0daf23935d19191f0 97 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 8 84 3.4E-10 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDG55_00865 3d3cc7f00dcfb1b38542e680a3f96f58 1226 SUPERFAMILY SSF52540 39 306 8.97E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_00865 3d3cc7f00dcfb1b38542e680a3f96f58 1226 SUPERFAMILY SSF52540 61 176 9.37E-5 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 9 268 6.7E-113 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 Gene3D G3DSA:3.90.226.10 1 269 6.5E-94 T 13-10-2018 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 66 84 3.1E-39 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 87 103 3.1E-39 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 122 135 3.1E-39 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 41 52 3.1E-39 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 106 119 3.1E-39 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 150 159 3.1E-39 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 1 268 38.097 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 SUPERFAMILY SSF52096 9 266 2.77E-83 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_03950 70157e9dda43304319c9a2d9b2a00e5c 274 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 6 101 4.9E-44 T 13-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 CDG55_06870 5a47ed8fdf4055c8aa5cceedfa9645ac 237 Gene3D G3DSA:3.40.50.880 5 234 1.4E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_06870 5a47ed8fdf4055c8aa5cceedfa9645ac 237 SUPERFAMILY SSF52317 42 204 8.71E-45 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_06870 5a47ed8fdf4055c8aa5cceedfa9645ac 237 Pfam PF00117 Glutamine amidotransferase class-I 25 187 1.5E-16 T 13-10-2018 IPR017926 Glutamine amidotransferase CDG55_01060 e2435b699b0e7bd4869c6d4e96178ff9 318 Pfam PF07751 Abi-like protein 26 213 1.3E-5 T 13-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 Pfam PF00005 ABC transporter 31 190 2.3E-28 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 SUPERFAMILY SSF52540 9 262 3.75E-63 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 Pfam PF00005 ABC transporter 342 492 1.6E-29 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 SUPERFAMILY SSF52540 316 565 7.48E-72 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 Gene3D G3DSA:3.40.50.300 314 576 5.2E-84 T 13-10-2018 CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 Gene3D G3DSA:3.40.50.300 7 308 5.9E-81 T 13-10-2018 CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 SMART SM00382 39 240 3.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 SMART SM00382 350 543 1.1E-14 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 270 0.15 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDG55_04685 fa529ed365dba57b6be83324197ebc7e 577 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 545 575 0.0012 T 13-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 CDG55_14405 1dd5fcbf4e0da08c253afdacbd25c271 196 Pfam PF01810 LysE type translocator 13 159 3.5E-6 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_02260 90340bb87f24768f57b0e064fbec7b4b 205 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 203 9.1E-69 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CDG55_02260 90340bb87f24768f57b0e064fbec7b4b 205 SUPERFAMILY SSF52317 2 203 2.97E-58 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_02260 90340bb87f24768f57b0e064fbec7b4b 205 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 203 35.313 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CDG55_02260 90340bb87f24768f57b0e064fbec7b4b 205 Gene3D G3DSA:3.40.50.880 1 205 4.4E-77 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_02260 90340bb87f24768f57b0e064fbec7b4b 205 PIRSF PIRSF000495 2 205 1.4E-70 T 13-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 CDG55_02260 90340bb87f24768f57b0e064fbec7b4b 205 Pfam PF00117 Glutamine amidotransferase class-I 6 200 3.6E-21 T 13-10-2018 IPR017926 Glutamine amidotransferase CDG55_06510 6ed93116006b3b3b6af38bb34c1d8370 162 Gene3D G3DSA:3.90.79.10 1 151 3.4E-38 T 13-10-2018 CDG55_06510 6ed93116006b3b3b6af38bb34c1d8370 162 Pfam PF00293 NUDIX domain 7 124 2.4E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_06510 6ed93116006b3b3b6af38bb34c1d8370 162 SUPERFAMILY SSF55811 2 152 3.11E-30 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_04640 692d0248056331a2654c6ba9303997ea 250 Gene3D G3DSA:3.40.50.150 9 249 4.3E-25 T 13-10-2018 CDG55_04640 692d0248056331a2654c6ba9303997ea 250 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 11 248 1.8E-61 T 13-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 CDG55_04640 692d0248056331a2654c6ba9303997ea 250 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 3 248 28.067 T 13-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 CDG55_04640 692d0248056331a2654c6ba9303997ea 250 SUPERFAMILY SSF53335 11 227 1.99E-28 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_04640 692d0248056331a2654c6ba9303997ea 250 Pfam PF13489 Methyltransferase domain 36 179 2.2E-13 T 13-10-2018 CDG55_00830 06999fb3f46ca927e9372b7e4814abb9 118 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 12 106 2.5E-23 T 13-10-2018 IPR009241 Toxin HigB-like CDG55_14770 6ddb1242b15a1c53c12420abc4d89074 375 Pfam PF00534 Glycosyl transferases group 1 188 349 9.0E-13 T 13-10-2018 IPR001296 Glycosyl transferase, family 1 CDG55_14770 6ddb1242b15a1c53c12420abc4d89074 375 Gene3D G3DSA:3.40.50.2000 170 351 3.5E-23 T 13-10-2018 CDG55_14770 6ddb1242b15a1c53c12420abc4d89074 375 SUPERFAMILY SSF53756 3 355 2.41E-32 T 13-10-2018 CDG55_14770 6ddb1242b15a1c53c12420abc4d89074 375 Gene3D G3DSA:3.40.50.2000 124 355 3.5E-23 T 13-10-2018 CDG55_14870 6bdc3e90d0c8b2fe1f49119839edab24 206 PIRSF PIRSF001488 1 206 1.1E-50 T 13-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL CDG55_14870 6bdc3e90d0c8b2fe1f49119839edab24 206 Pfam PF01323 DSBA-like thioredoxin domain 84 188 3.1E-15 T 13-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 CDG55_14870 6bdc3e90d0c8b2fe1f49119839edab24 206 SUPERFAMILY SSF52833 24 191 3.61E-41 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_14870 6bdc3e90d0c8b2fe1f49119839edab24 206 Gene3D G3DSA:3.40.30.10 24 206 1.4E-50 T 13-10-2018 CDG55_01930 c404d1c4fe1fb945bce03d0aff69c6a0 180 Pfam PF00857 Isochorismatase family 4 154 1.8E-35 T 13-10-2018 IPR000868 Isochorismatase-like GO:0003824 CDG55_01930 c404d1c4fe1fb945bce03d0aff69c6a0 180 SUPERFAMILY SSF52499 2 178 1.57E-45 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CDG55_01930 c404d1c4fe1fb945bce03d0aff69c6a0 180 Gene3D G3DSA:3.40.50.850 1 180 2.3E-45 T 13-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 CDG55_02545 99f81fdb8580b637a49a0ee7281bb05a 284 Gene3D G3DSA:3.90.550.10 1 223 1.5E-47 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_02545 99f81fdb8580b637a49a0ee7281bb05a 284 Pfam PF00535 Glycosyl transferase family 2 6 126 1.4E-29 T 13-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 CDG55_02545 99f81fdb8580b637a49a0ee7281bb05a 284 SUPERFAMILY SSF53448 3 244 2.38E-41 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_08035 a325c2d5df3c1819feca10e0574cefe0 229 SUPERFAMILY SSF53448 1 223 1.71E-57 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_08035 a325c2d5df3c1819feca10e0574cefe0 229 Pfam PF00483 Nucleotidyl transferase 2 140 1.9E-22 T 13-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 CDG55_08035 a325c2d5df3c1819feca10e0574cefe0 229 Gene3D G3DSA:3.90.550.10 1 228 7.3E-60 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_02955 3dc22ebdbe34f46d0c0b42f2eb0c53e5 262 Gene3D G3DSA:3.40.50.720 115 234 5.2E-79 T 13-10-2018 CDG55_02955 3dc22ebdbe34f46d0c0b42f2eb0c53e5 262 SUPERFAMILY SSF53223 2 101 2.19E-31 T 13-10-2018 CDG55_02955 3dc22ebdbe34f46d0c0b42f2eb0c53e5 262 SUPERFAMILY SSF51735 102 259 2.84E-35 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_02955 3dc22ebdbe34f46d0c0b42f2eb0c53e5 262 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 259 8.8E-75 T 13-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CDG55_02955 3dc22ebdbe34f46d0c0b42f2eb0c53e5 262 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 89 1.1E-23 T 13-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CDG55_02955 3dc22ebdbe34f46d0c0b42f2eb0c53e5 262 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 113 194 2.5E-14 T 13-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CDG55_02955 3dc22ebdbe34f46d0c0b42f2eb0c53e5 262 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 260 29.597 T 13-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 CDG55_02955 3dc22ebdbe34f46d0c0b42f2eb0c53e5 262 Gene3D G3DSA:3.40.50.10860 5 253 5.2E-79 T 13-10-2018 CDG55_05985 64b15e9d2592125ee6dc055eeedf6268 344 Hamap MF_00219 Dihydroorotase [pyrC]. 2 344 44.89 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_05985 64b15e9d2592125ee6dc055eeedf6268 344 Pfam PF01979 Amidohydrolase family 11 310 1.7E-17 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CDG55_05985 64b15e9d2592125ee6dc055eeedf6268 344 PIRSF PIRSF001237 1 344 4.4E-140 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_05985 64b15e9d2592125ee6dc055eeedf6268 344 SUPERFAMILY SSF51556 2 342 2.54E-139 T 13-10-2018 IPR032466 Metal-dependent hydrolase CDG55_05985 64b15e9d2592125ee6dc055eeedf6268 344 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 4 342 7.1E-136 T 13-10-2018 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 CDG55_05985 64b15e9d2592125ee6dc055eeedf6268 344 Gene3D G3DSA:3.20.20.140 2 343 2.9E-102 T 13-10-2018 CDG55_00430 c0e6ca88115aa66847162269bf52e5a2 343 Pfam PF11412 Disulphide bond corrector protein DsbC 32 145 1.8E-30 T 13-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain CDG55_00430 c0e6ca88115aa66847162269bf52e5a2 343 SUPERFAMILY SSF74863 32 145 1.57E-31 T 13-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CDG55_00430 c0e6ca88115aa66847162269bf52e5a2 343 Gene3D G3DSA:3.30.360.10 155 281 1.1E-31 T 13-10-2018 CDG55_00430 c0e6ca88115aa66847162269bf52e5a2 343 Gene3D G3DSA:3.30.360.10 282 343 3.3E-17 T 13-10-2018 CDG55_00430 c0e6ca88115aa66847162269bf52e5a2 343 Gene3D G3DSA:2.60.40.1250 24 154 3.6E-38 T 13-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 291 5.7E-153 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 Gene3D G3DSA:1.20.58.180 217 298 2.3E-34 T 13-10-2018 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 1.3E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 1.3E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 1.3E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 1.3E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 1.3E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 1.3E-69 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 Gene3D G3DSA:3.30.930.10 3 216 5.1E-113 T 13-10-2018 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 61.26 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 299 3.4E-163 T 13-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 CDG55_02910 eeecaff842fbf40c5c765740b21c3c47 326 SUPERFAMILY SSF55681 10 291 2.62E-136 T 13-10-2018 CDG55_03545 297e3c311a72339e0816023c409c5a35 157 Pfam PF13689 Domain of unknown function (DUF4154) 25 154 3.6E-23 T 13-10-2018 IPR025293 YfiR-like CDG55_13880 1487a50a6930e1cd654b4525163964d6 379 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 27 343 8.4E-65 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CDG55_13880 1487a50a6930e1cd654b4525163964d6 379 TIGRFAM TIGR00260 thrC: threonine synthase 11 350 4.4E-91 T 13-10-2018 IPR004450 Threonine synthase-like CDG55_13880 1487a50a6930e1cd654b4525163964d6 379 SUPERFAMILY SSF53686 11 376 2.1E-101 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDG55_13880 1487a50a6930e1cd654b4525163964d6 379 Gene3D G3DSA:3.40.50.1100 17 350 1.8E-115 T 13-10-2018 CDG55_13880 1487a50a6930e1cd654b4525163964d6 379 Gene3D G3DSA:3.40.50.1100 65 161 1.8E-115 T 13-10-2018 CDG55_13880 1487a50a6930e1cd654b4525163964d6 379 PIRSF PIRSF038945 1 375 2.7E-151 T 13-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 CDG55_01740 a8bc8e219021dbf83ce0a3204a0ac191 216 Gene3D G3DSA:3.40.50.2020 6 216 5.9E-75 T 13-10-2018 CDG55_01740 a8bc8e219021dbf83ce0a3204a0ac191 216 Pfam PF00156 Phosphoribosyl transferase domain 46 163 1.4E-14 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDG55_01740 a8bc8e219021dbf83ce0a3204a0ac191 216 SUPERFAMILY SSF53271 10 199 4.46E-47 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CDG55_01740 a8bc8e219021dbf83ce0a3204a0ac191 216 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 14 191 1.6E-56 T 13-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_01740 a8bc8e219021dbf83ce0a3204a0ac191 216 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 216 32.904 T 13-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 CDG55_11565 e96979f604e940d487bbdf40c6dba82b 112 SUPERFAMILY SSF110857 1 110 6.67E-20 T 13-10-2018 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily CDG55_11565 e96979f604e940d487bbdf40c6dba82b 112 Gene3D G3DSA:3.10.490.10 1 112 4.2E-19 T 13-10-2018 CDG55_11565 e96979f604e940d487bbdf40c6dba82b 112 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 4 108 8.6E-15 T 13-10-2018 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like CDG55_04590 580421aae6127d1f146d1625186987dc 231 SMART SM00345 13 71 3.1E-11 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_04590 580421aae6127d1f146d1625186987dc 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 1.4E-13 T 13-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 CDG55_04590 580421aae6127d1f146d1625186987dc 231 Pfam PF07729 FCD domain 86 202 3.2E-8 T 13-10-2018 IPR011711 GntR, C-terminal CDG55_04590 580421aae6127d1f146d1625186987dc 231 SUPERFAMILY SSF48008 103 213 2.88E-5 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CDG55_04590 580421aae6127d1f146d1625186987dc 231 Gene3D G3DSA:1.10.10.10 5 73 2.5E-18 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04590 580421aae6127d1f146d1625186987dc 231 SUPERFAMILY SSF46785 5 75 3.58E-17 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_04590 580421aae6127d1f146d1625186987dc 231 Gene3D G3DSA:1.20.120.530 74 215 1.6E-8 T 13-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal CDG55_03190 791f1b0aa599919a5338f65e1e4a1271 116 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 116 25.832 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03190 791f1b0aa599919a5338f65e1e4a1271 116 Gene3D G3DSA:3.30.420.100 2 116 2.0E-40 T 13-10-2018 CDG55_03190 791f1b0aa599919a5338f65e1e4a1271 116 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 4 116 3.0E-39 T 13-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 CDG55_03190 791f1b0aa599919a5338f65e1e4a1271 116 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 116 1.5E-40 T 13-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_03190 791f1b0aa599919a5338f65e1e4a1271 116 SUPERFAMILY SSF53137 4 114 2.18E-49 T 13-10-2018 CDG55_12170 3683980e1535e215fced291503d95c0b 180 Gene3D G3DSA:3.40.50.300 3 177 1.2E-18 T 13-10-2018 CDG55_12170 3683980e1535e215fced291503d95c0b 180 Pfam PF03029 Conserved hypothetical ATP binding protein 33 97 8.9E-5 T 13-10-2018 IPR004130 GPN-loop GTPase CDG55_12170 3683980e1535e215fced291503d95c0b 180 SUPERFAMILY SSF52540 5 170 4.86E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13405 39f13af4e65417f0bbeada0aa9c0436b 286 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 21 127 1.0E-31 T 13-10-2018 IPR010627 Peptidase A24A, N-terminal CDG55_13405 39f13af4e65417f0bbeada0aa9c0436b 286 Pfam PF01478 Type IV leader peptidase family 138 247 6.8E-22 T 13-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 CDG55_13405 39f13af4e65417f0bbeada0aa9c0436b 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 227 242 3.6E-26 T 13-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial CDG55_13405 39f13af4e65417f0bbeada0aa9c0436b 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 147 164 3.6E-26 T 13-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial CDG55_13405 39f13af4e65417f0bbeada0aa9c0436b 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 215 226 3.6E-26 T 13-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial CDG55_13405 39f13af4e65417f0bbeada0aa9c0436b 286 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 204 214 3.6E-26 T 13-10-2018 IPR014032 Peptidase A24A, prepilin type IV, bacterial CDG55_08775 69c21228dc6378cb67a848f29aadc9ea 246 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 246 43.722 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CDG55_08775 69c21228dc6378cb67a848f29aadc9ea 246 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 4 238 3.0E-42 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CDG55_08775 69c21228dc6378cb67a848f29aadc9ea 246 Pfam PF02654 Cobalamin-5-phosphate synthase 7 235 5.3E-52 T 13-10-2018 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 CDG55_11110 f4b9ad3338d9adddc29f35efb0a23ee8 491 Gene3D G3DSA:3.40.50.300 27 135 5.0E-6 T 13-10-2018 CDG55_11110 f4b9ad3338d9adddc29f35efb0a23ee8 491 Pfam PF07693 KAP family P-loop domain 48 205 1.2E-22 T 13-10-2018 IPR011646 KAP family P-loop domain CDG55_07535 d081acfd29c30183c4cea3fae108a266 195 Gene3D G3DSA:3.40.50.150 4 195 2.2E-44 T 13-10-2018 CDG55_07535 d081acfd29c30183c4cea3fae108a266 195 Pfam PF01596 O-methyltransferase 17 163 1.2E-20 T 13-10-2018 IPR002935 O-methyltransferase, family 3 GO:0008171 CDG55_07535 d081acfd29c30183c4cea3fae108a266 195 SUPERFAMILY SSF53335 21 194 3.72E-29 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_04000 6e383f2b55e1a9686c3cad916fd448e3 145 SMART SM00347 31 132 4.4E-21 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_04000 6e383f2b55e1a9686c3cad916fd448e3 145 Pfam PF01047 MarR family 38 96 3.3E-16 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_04000 6e383f2b55e1a9686c3cad916fd448e3 145 SUPERFAMILY SSF46785 8 144 1.64E-29 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_04000 6e383f2b55e1a9686c3cad916fd448e3 145 Gene3D G3DSA:1.10.10.10 1 145 3.4E-33 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04000 6e383f2b55e1a9686c3cad916fd448e3 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 5.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_04000 6e383f2b55e1a9686c3cad916fd448e3 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 5.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_04000 6e383f2b55e1a9686c3cad916fd448e3 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 5.2E-5 T 13-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 CDG55_05235 c1995a8de0750f54014df89180b51cc6 508 Gene3D G3DSA:1.20.1720.10 18 254 3.2E-47 T 13-10-2018 CDG55_05235 c1995a8de0750f54014df89180b51cc6 508 Pfam PF07690 Major Facilitator Superfamily 22 416 6.6E-55 T 13-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 CDG55_05235 c1995a8de0750f54014df89180b51cc6 508 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 16 493 1.3E-138 T 13-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 CDG55_05235 c1995a8de0750f54014df89180b51cc6 508 Gene3D G3DSA:1.20.1250.20 273 502 1.1E-16 T 13-10-2018 CDG55_05235 c1995a8de0750f54014df89180b51cc6 508 SUPERFAMILY SSF103473 19 498 3.4E-67 T 13-10-2018 IPR036259 MFS transporter superfamily CDG55_14415 584052f565c10e845d24597c6fd0796c 280 Gene3D G3DSA:3.40.50.300 2 280 6.1E-60 T 13-10-2018 CDG55_14415 584052f565c10e845d24597c6fd0796c 280 Pfam PF13614 AAA domain 6 206 1.0E-38 T 13-10-2018 IPR025669 AAA domain CDG55_14415 584052f565c10e845d24597c6fd0796c 280 SUPERFAMILY SSF52540 3 278 2.34E-50 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04015 7c3a148838b676caf77fd24e0014d885 173 SUPERFAMILY SSF52091 8 105 3.92E-13 T 13-10-2018 IPR036513 STAS domain superfamily CDG55_04015 7c3a148838b676caf77fd24e0014d885 173 Gene3D G3DSA:3.30.750.24 4 110 5.2E-12 T 13-10-2018 IPR036513 STAS domain superfamily CDG55_04015 7c3a148838b676caf77fd24e0014d885 173 PIRSF PIRSF029548 1 160 4.7E-35 T 13-10-2018 IPR014557 Uncharacterised conserved protein UCP029548, STAS-type CDG55_05345 5802d9a3b74faa838adcfbc93cbb0e9d 138 Pfam PF13994 PgaD-like protein 6 135 3.3E-30 T 13-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 CDG55_05345 5802d9a3b74faa838adcfbc93cbb0e9d 138 TIGRFAM TIGR03940 PGA_PgaD: poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD 5 138 1.7E-36 T 13-10-2018 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD GO:0043709 CDG55_12750 8eda8f2ed73130a7a1b6dd916fe2eec4 244 PIRSF PIRSF009160 1 244 1.6E-77 T 13-10-2018 IPR010539 Protein of unknown function UCP009160 CDG55_12750 8eda8f2ed73130a7a1b6dd916fe2eec4 244 Pfam PF12811 Bax inhibitor 1 like 6 241 3.2E-62 T 13-10-2018 IPR010539 Protein of unknown function UCP009160 CDG55_02080 718b1923d1d9b2a12f8cca182faf8c8f 356 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 352 1.8E-114 T 13-10-2018 IPR017686 Phage/plasmid-like protein CDG55_02080 718b1923d1d9b2a12f8cca182faf8c8f 356 Pfam PF06067 Domain of unknown function (DUF932) 77 336 5.7E-76 T 13-10-2018 IPR026325 Protein of unknown function DUF932 CDG55_05705 41d6927e439644fe866b2e01ac450751 463 Gene3D G3DSA:1.10.3720.10 233 461 7.3E-34 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_05705 41d6927e439644fe866b2e01ac450751 463 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 259 460 7.2E-20 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_05705 41d6927e439644fe866b2e01ac450751 463 SUPERFAMILY SSF161098 237 449 2.75E-35 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_05705 41d6927e439644fe866b2e01ac450751 463 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 220 460 5.2E-64 T 13-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 CDG55_05705 41d6927e439644fe866b2e01ac450751 463 Pfam PF11812 Domain of unknown function (DUF3333) 31 194 1.8E-41 T 13-10-2018 IPR024573 Domain of unknown function DUF3333 CDG55_04470 6964495e1ef08626419ed3bcbb6303fb 321 SMART SM00849 87 295 6.1E-24 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_04470 6964495e1ef08626419ed3bcbb6303fb 321 Pfam PF00753 Metallo-beta-lactamase superfamily 86 262 1.4E-18 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_04470 6964495e1ef08626419ed3bcbb6303fb 321 SUPERFAMILY SSF56281 31 305 1.83E-46 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_04470 6964495e1ef08626419ed3bcbb6303fb 321 Gene3D G3DSA:3.60.15.10 31 321 1.6E-118 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_10930 6e3df2b7413b829a7c6da4ac31b4c29a 218 Pfam PF10067 Predicted membrane protein (DUF2306) 58 208 5.1E-29 T 13-10-2018 IPR018750 Protein of unknown function DUF2306, membrane CDG55_10910 042ad55d1b9203d9a71c8292f2fa5f21 121 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 11 106 3.5E-7 T 13-10-2018 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10910 042ad55d1b9203d9a71c8292f2fa5f21 121 SUPERFAMILY SSF81343 4 119 4.14E-26 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10910 042ad55d1b9203d9a71c8292f2fa5f21 121 PIRSF PIRSF000169 1 121 5.5E-39 T 13-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 CDG55_10910 042ad55d1b9203d9a71c8292f2fa5f21 121 Gene3D G3DSA:1.20.1300.10 1 120 9.9E-29 T 13-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 CDG55_10910 042ad55d1b9203d9a71c8292f2fa5f21 121 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 9 119 8.4E-34 T 13-10-2018 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 CDG55_08620 28da0cba193a4d9dffac05eba3e2a664 248 SUPERFAMILY SSF48613 18 242 9.76E-44 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 CDG55_08620 28da0cba193a4d9dffac05eba3e2a664 248 Pfam PF14518 Iron-containing redox enzyme 57 233 3.4E-19 T 13-10-2018 CDG55_08620 28da0cba193a4d9dffac05eba3e2a664 248 Gene3D G3DSA:1.20.910.10 2 248 9.8E-76 T 13-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 CDG55_07270 4e2cd5d02eadd60e9804552618667195 258 ProDom PD121987 PLASMID RESISTANT TELLURIUM KLAA KLAA/KILA MAINTENANCE RESISTANCE KILA TELLURITE 64 256 8.0E-65 T 13-10-2018 CDG55_00170 514270d37001e5af8241534091b092de 421 Pfam PF13657 HipA N-terminal domain 16 121 4.3E-11 T 13-10-2018 IPR017508 HipA, N-terminal subdomain 1 CDG55_00170 514270d37001e5af8241534091b092de 421 Pfam PF07804 HipA-like C-terminal domain 164 379 3.0E-39 T 13-10-2018 IPR012893 HipA-like, C-terminal CDG55_08250 9f8d05c9d077e67c5870d8b93d2fd830 113 Pfam PF00462 Glutaredoxin 21 85 3.1E-17 T 13-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 CDG55_08250 9f8d05c9d077e67c5870d8b93d2fd830 113 SUPERFAMILY SSF52833 7 107 2.53E-33 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_08250 9f8d05c9d077e67c5870d8b93d2fd830 113 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 10 105 5.6E-44 T 13-10-2018 IPR004480 Monothiol glutaredoxin-related CDG55_08250 9f8d05c9d077e67c5870d8b93d2fd830 113 PIRSF PIRSF005894 2 110 1.0E-46 T 13-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 CDG55_08250 9f8d05c9d077e67c5870d8b93d2fd830 113 Gene3D G3DSA:3.40.30.10 7 108 2.6E-30 T 13-10-2018 CDG55_03735 f97e63833c45c5866a1aaf55d4bc838c 440 Pfam PF00909 Ammonium Transporter Family 36 422 1.1E-111 T 13-10-2018 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 CDG55_03735 f97e63833c45c5866a1aaf55d4bc838c 440 TIGRFAM TIGR00836 amt: ammonium transporter 34 422 5.7E-115 T 13-10-2018 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 CDG55_03735 f97e63833c45c5866a1aaf55d4bc838c 440 Gene3D G3DSA:1.10.3430.10 15 438 7.6E-134 T 13-10-2018 IPR029020 Ammonium/urea transporter CDG55_03735 f97e63833c45c5866a1aaf55d4bc838c 440 SUPERFAMILY SSF111352 32 399 1.96E-102 T 13-10-2018 CDG55_14120 e9a669eace12a5d823a41c91ba828215 172 SUPERFAMILY SSF53955 9 169 2.01E-30 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_14120 e9a669eace12a5d823a41c91ba828215 172 Gene3D G3DSA:1.10.530.10 45 172 1.6E-27 T 13-10-2018 CDG55_14120 e9a669eace12a5d823a41c91ba828215 172 Pfam PF01464 Transglycosylase SLT domain 53 156 5.8E-20 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CDG55_10195 944c78715189be691fd7e5c9549761cf 301 SUPERFAMILY SSF53098 79 292 2.73E-6 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_10195 944c78715189be691fd7e5c9549761cf 301 Pfam PF13612 Transposase DDE domain 110 262 7.0E-57 T 13-10-2018 IPR025668 Transposase DDE domain CDG55_09520 40f53edadc66f241046dcd3c5108e6b0 886 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 207 252 2.2E-5 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09520 40f53edadc66f241046dcd3c5108e6b0 886 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 804 839 2.3E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09520 40f53edadc66f241046dcd3c5108e6b0 886 Pfam PF01345 Domain of unknown function DUF11 205 318 3.7E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09520 40f53edadc66f241046dcd3c5108e6b0 886 Pfam PF01345 Domain of unknown function DUF11 806 886 4.0E-7 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_03385 3189dbe6957a9b21ea846ec1fd7ff202 71 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 5.2E-19 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 CDG55_03385 3189dbe6957a9b21ea846ec1fd7ff202 71 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 71 19.926 T 13-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 CDG55_03385 3189dbe6957a9b21ea846ec1fd7ff202 71 Pfam PF02416 mttA/Hcf106 family 4 48 6.2E-13 T 13-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 CDG55_05145 9be866949576fe4ed4580b64d836f44c 151 TIGRFAM TIGR02481 hemeryth_dom: hemerythrin-like metal-binding domain 4 123 2.6E-30 T 13-10-2018 IPR012827 Haemerythrin, metal-binding domain GO:0046872 CDG55_05145 9be866949576fe4ed4580b64d836f44c 151 Pfam PF01814 Hemerythrin HHE cation binding domain 12 124 2.9E-8 T 13-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 CDG55_05145 9be866949576fe4ed4580b64d836f44c 151 SUPERFAMILY SSF47188 2 124 1.2E-28 T 13-10-2018 IPR035938 Hemerythrin-like superfamily CDG55_05145 9be866949576fe4ed4580b64d836f44c 151 Gene3D G3DSA:1.20.120.50 2 127 1.4E-31 T 13-10-2018 IPR035938 Hemerythrin-like superfamily CDG55_04510 7d847ccccce3863e7f6ef258a6c7d8bb 194 Pfam PF01810 LysE type translocator 12 188 1.6E-14 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_07990 6b08f3232930b6ab10af50c0731d3a79 121 Pfam PF04241 Protein of unknown function (DUF423) 16 102 8.7E-25 T 13-10-2018 IPR006696 Protein of unknown function DUF423 CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 Gene3D G3DSA:3.40.50.720 2 264 6.9E-65 T 13-10-2018 CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 SUPERFAMILY SSF51735 12 233 1.38E-62 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 196 0.0017 T 13-10-2018 CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 6.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 6.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 6.4E-11 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 1.1E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 187 204 1.1E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.1E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 1.1E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 1.1E-20 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02325 f55128c3c749d039d3c65933b8ec8e56 295 Pfam PF00106 short chain dehydrogenase 16 205 1.9E-54 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_05780 6c0d75363cc4cd2d81523f0eb62ecadc 394 Gene3D G3DSA:3.40.50.410 212 377 6.7E-9 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CDG55_05780 6c0d75363cc4cd2d81523f0eb62ecadc 394 Pfam PF05762 VWA domain containing CoxE-like protein 157 372 2.0E-50 T 13-10-2018 IPR008912 Uncharacterised protein family CoxE-like CDG55_05780 6c0d75363cc4cd2d81523f0eb62ecadc 394 SUPERFAMILY SSF53300 217 377 5.25E-25 T 13-10-2018 IPR036465 von Willebrand factor A-like domain superfamily CDG55_05780 6c0d75363cc4cd2d81523f0eb62ecadc 394 SMART SM00327 216 375 3.0E-6 T 13-10-2018 IPR002035 von Willebrand factor, type A CDG55_13285 ece0d27f5c93989daeef0fd6965512c7 539 SUPERFAMILY SSF56112 95 435 1.19E-23 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_13285 ece0d27f5c93989daeef0fd6965512c7 539 Pfam PF03109 ABC1 family 113 231 4.1E-34 T 13-10-2018 IPR004147 UbiB domain CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 9.3E-12 T 13-10-2018 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 9.3E-12 T 13-10-2018 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 114 132 9.3E-12 T 13-10-2018 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 9.3E-12 T 13-10-2018 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 4.8E-6 T 13-10-2018 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 4.8E-6 T 13-10-2018 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 4.8E-6 T 13-10-2018 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 337 8.3E-52 T 13-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 Gene3D G3DSA:3.50.50.100 1 411 7.3E-107 T 13-10-2018 CDG55_05550 860dd6daac1dda6133314a0f5f9a003e 428 SUPERFAMILY SSF51905 5 345 8.1E-28 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_11770 0d531683d0cffa58d0a63c684cec19f7 331 Pfam PF10974 Protein of unknown function (DUF2804) 7 330 1.5E-63 T 13-10-2018 IPR021243 Protein of unknown function DUF2804 CDG55_02050 e77fdf08e5f6e2689eafe651f35cfe7c 302 Pfam PF11726 Inovirus Gp2 116 288 3.5E-19 T 13-10-2018 CDG55_13890 21c8130796e365f7fa2fd7d33a5ade03 347 SUPERFAMILY SSF56601 101 340 5.8E-56 T 13-10-2018 IPR012338 Beta-lactamase/transpeptidase-like CDG55_13890 21c8130796e365f7fa2fd7d33a5ade03 347 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 129 140 1.1E-13 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_13890 21c8130796e365f7fa2fd7d33a5ade03 347 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 208 221 1.1E-13 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_13890 21c8130796e365f7fa2fd7d33a5ade03 347 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 181 198 1.1E-13 T 13-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 CDG55_13890 21c8130796e365f7fa2fd7d33a5ade03 347 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 96 324 2.4E-58 T 13-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 CDG55_13890 21c8130796e365f7fa2fd7d33a5ade03 347 Gene3D G3DSA:3.40.710.10 73 346 9.2E-68 T 13-10-2018 CDG55_03300 14f24ecea86ed28e39ece0c6e102acbb 68 Pfam PF09526 Probable metal-binding protein (DUF2387) 1 57 9.1E-15 T 13-10-2018 IPR012658 Conserved hypothetical protein CHP02443 CDG55_09250 2145fdca54dd418bc0c0f94e9b4dd858 144 SUPERFAMILY SSF55083 8 126 3.66E-14 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CDG55_09250 2145fdca54dd418bc0c0f94e9b4dd858 144 Gene3D G3DSA:3.30.70.560 6 127 1.0E-12 T 13-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CDG55_09250 2145fdca54dd418bc0c0f94e9b4dd858 144 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 10 121 2.6E-12 T 13-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 CDG55_01120 41768d8bf7685e8d2fb4ca35fcfc8096 116 Pfam PF02411 MerT mercuric transport protein 1 116 8.7E-65 T 13-10-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 CDG55_04770 a3497b71515800c9a973cdb73711a732 126 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 123 6.0E-64 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CDG55_04770 a3497b71515800c9a973cdb73711a732 126 Pfam PF02261 Aspartate decarboxylase 1 114 8.9E-45 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CDG55_04770 a3497b71515800c9a973cdb73711a732 126 Gene3D G3DSA:2.40.40.20 1 126 2.9E-50 T 13-10-2018 CDG55_04770 a3497b71515800c9a973cdb73711a732 126 SUPERFAMILY SSF50692 1 122 4.47E-45 T 13-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily CDG55_04770 a3497b71515800c9a973cdb73711a732 126 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 125 7.1E-45 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CDG55_04770 a3497b71515800c9a973cdb73711a732 126 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 126 63.382 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CDG55_04770 a3497b71515800c9a973cdb73711a732 126 PIRSF PIRSF006246 1 124 9.5E-46 T 13-10-2018 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155 CDG55_05015 db7d10c2657454678a2a0539c3fd5f7b 449 Pfam PF12787 EcsC protein family 90 315 5.3E-21 T 13-10-2018 IPR024787 EcsC protein CDG55_05015 db7d10c2657454678a2a0539c3fd5f7b 449 ProDom PD038378 ECSC YDBA CC1715 BH1193 ECSC-LIKE ESCC 134 311 1.0E-5 T 13-10-2018 CDG55_00630 90132c49e5a9b1e9451a1038f18cb065 55 Pfam PF10832 Protein of unknown function (DUF2559) 4 41 6.6E-7 T 13-10-2018 IPR022541 Protein of unknown function DUF2559 CDG55_04855 aa5a857bd1e8a447aa147b1c6df68d76 157 Gene3D G3DSA:2.40.280.10 6 135 1.0E-45 T 13-10-2018 IPR023620 Small protein B CDG55_04855 aa5a857bd1e8a447aa147b1c6df68d76 157 TIGRFAM TIGR00086 smpB: SsrA-binding protein 14 155 3.7E-51 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CDG55_04855 aa5a857bd1e8a447aa147b1c6df68d76 157 Pfam PF01668 SmpB protein 14 156 5.1E-56 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CDG55_04855 aa5a857bd1e8a447aa147b1c6df68d76 157 SUPERFAMILY SSF74982 8 138 2.35E-49 T 13-10-2018 IPR023620 Small protein B CDG55_04855 aa5a857bd1e8a447aa147b1c6df68d76 157 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 14 138 6.0E-55 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CDG55_04855 aa5a857bd1e8a447aa147b1c6df68d76 157 Hamap MF_00023 SsrA-binding protein [smpB]. 1 157 68.864 T 13-10-2018 IPR000037 SsrA-binding protein GO:0003723 CDG55_15170 7d65c1a20020e525331b75ca22e41542 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.163 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_15170 7d65c1a20020e525331b75ca22e41542 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 2.1E-26 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_15170 7d65c1a20020e525331b75ca22e41542 44 Pfam PF00468 Ribosomal protein L34 1 44 1.8E-25 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_15170 7d65c1a20020e525331b75ca22e41542 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 39 2.0E-14 T 13-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 CDG55_10410 79ad8683b314b58405f907758f824a46 387 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 91 330 4.8E-12 T 13-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CDG55_10410 79ad8683b314b58405f907758f824a46 387 Gene3D G3DSA:1.10.287.470 135 264 2.5E-32 T 13-10-2018 CDG55_10410 79ad8683b314b58405f907758f824a46 387 SUPERFAMILY SSF111369 91 222 6.02E-8 T 13-10-2018 CDG55_10410 79ad8683b314b58405f907758f824a46 387 Gene3D G3DSA:2.40.50.100 101 299 2.5E-32 T 13-10-2018 CDG55_10410 79ad8683b314b58405f907758f824a46 387 SUPERFAMILY SSF111369 224 353 8.24E-7 T 13-10-2018 CDG55_10410 79ad8683b314b58405f907758f824a46 387 Gene3D G3DSA:2.40.30.170 91 358 2.5E-32 T 13-10-2018 CDG55_07615 851f50e890e8f443de55d28426258c4d 271 Gene3D G3DSA:3.30.1130.10 132 271 2.3E-52 T 13-10-2018 CDG55_07615 851f50e890e8f443de55d28426258c4d 271 PIRSF PIRSF004750 1 271 2.6E-108 T 13-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CDG55_07615 851f50e890e8f443de55d28426258c4d 271 Pfam PF14489 QueF-like protein 184 255 1.2E-21 T 13-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CDG55_07615 851f50e890e8f443de55d28426258c4d 271 Gene3D G3DSA:3.30.1130.10 14 130 5.9E-40 T 13-10-2018 CDG55_07615 851f50e890e8f443de55d28426258c4d 271 SUPERFAMILY SSF55620 172 254 4.3E-11 T 13-10-2018 CDG55_07615 851f50e890e8f443de55d28426258c4d 271 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 14 122 6.3E-38 T 13-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CDG55_07615 851f50e890e8f443de55d28426258c4d 271 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 271 117.958 T 13-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CDG55_07615 851f50e890e8f443de55d28426258c4d 271 TIGRFAM TIGR03138 QueF: queuine synthase 3 271 2.2E-110 T 13-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 CDG55_09245 d95dbe140dd88e5f4ac109703cf7d999 183 Pfam PF10973 Protein of unknown function (DUF2799) 29 111 7.7E-19 T 13-10-2018 IPR021242 Protein of unknown function DUF2799 CDG55_08840 e88d6acaab9a23bdf61f0c4bb7ffeb41 493 SUPERFAMILY SSF51905 2 229 5.51E-15 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08840 e88d6acaab9a23bdf61f0c4bb7ffeb41 493 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 2 338 8.0E-113 T 13-10-2018 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase CDG55_08840 e88d6acaab9a23bdf61f0c4bb7ffeb41 493 Gene3D G3DSA:3.50.50.60 1 419 2.7E-117 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_09920 200f0c11123e9c2d520c2a264cbfa61d 290 SUPERFAMILY SSF53850 39 279 1.09E-66 T 13-10-2018 CDG55_09920 200f0c11123e9c2d520c2a264cbfa61d 290 Gene3D G3DSA:3.40.190.10 118 229 5.4E-77 T 13-10-2018 CDG55_09920 200f0c11123e9c2d520c2a264cbfa61d 290 Pfam PF03180 NLPA lipoprotein 41 277 1.9E-68 T 13-10-2018 IPR004872 Lipoprotein NlpA family CDG55_09920 200f0c11123e9c2d520c2a264cbfa61d 290 Gene3D G3DSA:3.40.190.10 43 270 5.4E-77 T 13-10-2018 CDG55_07590 57a0eeca001a0a92b4f85c2ff52b35df 150 Pfam PF06127 Protein of unknown function (DUF962) 1 135 1.4E-21 T 13-10-2018 IPR009305 Protein of unknown function DUF962 CDG55_04580 8547a06c2078a3b028dd4e8cf3580cae 180 SUPERFAMILY SSF52540 5 171 9.69E-20 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_04580 8547a06c2078a3b028dd4e8cf3580cae 180 Pfam PF03029 Conserved hypothetical ATP binding protein 29 128 9.2E-5 T 13-10-2018 IPR004130 GPN-loop GTPase CDG55_04580 8547a06c2078a3b028dd4e8cf3580cae 180 Gene3D G3DSA:3.40.50.300 3 176 1.8E-18 T 13-10-2018 CDG55_04715 df045de04d3293c8196a78bb9de7171c 220 Pfam PF04315 Elongation factor P hydroxylase 53 213 6.6E-60 T 13-10-2018 IPR007411 Elongation factor P hydroxylase CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 Gene3D G3DSA:3.40.50.1260 165 383 3.1E-158 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 SUPERFAMILY SSF53748 2 392 2.0E-137 T 13-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 369 386 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 313 338 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PRINTS PR00477 Phosphoglycerate kinase family signature 346 357 2.1E-80 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 Gene3D G3DSA:3.40.50.1260 10 389 3.1E-158 T 13-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 393 38.021 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 Pfam PF00162 Phosphoglycerate kinase 6 383 3.6E-138 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_07180 c9795f99e9d0bf4d0e0577a6e02e7077 395 PIRSF PIRSF000724 1 395 2.5E-127 T 13-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 CDG55_04555 6513c13a9a96fab1ba582880b3899438 269 Pfam PF01578 Cytochrome C assembly protein 8 266 7.5E-23 T 13-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 SUPERFAMILY SSF52964 39 157 5.89E-28 T 13-10-2018 CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 Gene3D G3DSA:3.40.50.10070 26 160 6.0E-33 T 13-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 10 424 42.146 T 13-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 SUPERFAMILY SSF69304 156 426 7.06E-52 T 13-10-2018 CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 Gene3D G3DSA:2.120.10.30 161 427 5.5E-82 T 13-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 Pfam PF07676 WD40-like Beta Propeller Repeat 201 225 0.0033 T 13-10-2018 IPR011659 WD40-like Beta Propeller CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 Pfam PF07676 WD40-like Beta Propeller Repeat 239 269 7.2E-7 T 13-10-2018 IPR011659 WD40-like Beta Propeller CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 Pfam PF07676 WD40-like Beta Propeller Repeat 370 394 0.0015 T 13-10-2018 IPR011659 WD40-like Beta Propeller CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 Pfam PF07676 WD40-like Beta Propeller Repeat 277 313 2.0E-11 T 13-10-2018 IPR011659 WD40-like Beta Propeller CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 23 424 1.7E-151 T 13-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 CDG55_10270 1ec980fc69a23a85535f69bb1524fa7b 427 Pfam PF04052 TolB amino-terminal domain 30 124 1.9E-18 T 13-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 CDG55_07380 4f5218558b2a24072b61e0b0cc377f70 69 SMART SM00357 6 69 2.5E-27 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CDG55_07380 4f5218558b2a24072b61e0b0cc377f70 69 Gene3D G3DSA:2.40.50.140 4 67 1.2E-27 T 13-10-2018 CDG55_07380 4f5218558b2a24072b61e0b0cc377f70 69 PIRSF PIRSF002599 1 69 9.2E-23 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CDG55_07380 4f5218558b2a24072b61e0b0cc377f70 69 SUPERFAMILY SSF50249 4 68 1.1E-22 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_07380 4f5218558b2a24072b61e0b0cc377f70 69 PRINTS PR00050 Cold shock protein signature 42 60 7.3E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07380 4f5218558b2a24072b61e0b0cc377f70 69 PRINTS PR00050 Cold shock protein signature 7 22 7.3E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07380 4f5218558b2a24072b61e0b0cc377f70 69 PRINTS PR00050 Cold shock protein signature 27 36 7.3E-15 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_07380 4f5218558b2a24072b61e0b0cc377f70 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 8.2E-27 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_13505 2ab670f6fdf27ebef1f49e5ab6e998e7 424 SUPERFAMILY SSF55781 15 159 3.6E-13 T 13-10-2018 CDG55_09260 02462cf9fa7bd882b4e8740403ba9715 432 Pfam PF03109 ABC1 family 99 217 3.6E-31 T 13-10-2018 IPR004147 UbiB domain CDG55_09260 02462cf9fa7bd882b4e8740403ba9715 432 SUPERFAMILY SSF56112 79 355 2.84E-23 T 13-10-2018 IPR011009 Protein kinase-like domain superfamily CDG55_10175 1ee915a09ae104a0e89d1b2175088e54 226 Pfam PF06508 Queuosine biosynthesis protein QueC 8 216 3.4E-77 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CDG55_10175 1ee915a09ae104a0e89d1b2175088e54 226 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 9 209 4.5E-62 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CDG55_10175 1ee915a09ae104a0e89d1b2175088e54 226 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 7 222 54.52 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CDG55_10175 1ee915a09ae104a0e89d1b2175088e54 226 Gene3D G3DSA:3.40.50.620 6 224 1.2E-73 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10175 1ee915a09ae104a0e89d1b2175088e54 226 SUPERFAMILY SSF52402 8 224 2.18E-65 T 13-10-2018 CDG55_10175 1ee915a09ae104a0e89d1b2175088e54 226 PIRSF PIRSF006293 5 226 1.2E-77 T 13-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 CDG55_05955 2216f7d7105f370e859b1ae91f94cf6b 336 SUPERFAMILY SSF161098 132 319 1.44E-21 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_05955 2216f7d7105f370e859b1ae91f94cf6b 336 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 4 49 5.3E-6 T 13-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CDG55_05955 2216f7d7105f370e859b1ae91f94cf6b 336 Gene3D G3DSA:1.10.3720.10 125 335 1.8E-17 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_05955 2216f7d7105f370e859b1ae91f94cf6b 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 155 335 7.9E-28 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_15125 963ae3495cb30ce6be05ac09e823863b 175 SUPERFAMILY SSF53271 7 173 5.24E-52 T 13-10-2018 IPR029057 Phosphoribosyltransferase-like CDG55_15125 963ae3495cb30ce6be05ac09e823863b 175 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 1.2E-67 T 13-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 CDG55_15125 963ae3495cb30ce6be05ac09e823863b 175 Pfam PF00156 Phosphoribosyl transferase domain 14 161 4.1E-25 T 13-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 CDG55_15125 963ae3495cb30ce6be05ac09e823863b 175 Gene3D G3DSA:3.40.50.2020 2 175 3.1E-63 T 13-10-2018 CDG55_09500 1c0887e29341bcabed83f9a45eca556b 891 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 228 267 7.7E-14 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09500 1c0887e29341bcabed83f9a45eca556b 891 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 797 837 2.9E-8 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09500 1c0887e29341bcabed83f9a45eca556b 891 Pfam PF01345 Domain of unknown function DUF11 217 319 1.2E-10 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_09500 1c0887e29341bcabed83f9a45eca556b 891 Pfam PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase 530 617 1.2E-7 T 13-10-2018 IPR018905 Alpha-galactosidase, NEW3 domain CDG55_09500 1c0887e29341bcabed83f9a45eca556b 891 Gene3D G3DSA:2.60.40.740 210 346 5.0E-9 T 13-10-2018 CDG55_09500 1c0887e29341bcabed83f9a45eca556b 891 SUPERFAMILY SSF49401 225 334 1.39E-8 T 13-10-2018 IPR008966 Adhesion domain superfamily CDG55_03100 3827082091910239f75f3a7b0456f614 242 Gene3D G3DSA:3.40.50.880 5 242 3.2E-51 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_03100 3827082091910239f75f3a7b0456f614 242 SUPERFAMILY SSF52317 38 197 9.87E-40 T 13-10-2018 IPR029062 Class I glutamine amidotransferase-like CDG55_03100 3827082091910239f75f3a7b0456f614 242 Pfam PF00117 Glutamine amidotransferase class-I 53 192 2.9E-14 T 13-10-2018 IPR017926 Glutamine amidotransferase CDG55_06290 4215f93a809236f1918410fc694998a8 182 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 8 178 2.0E-31 T 13-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related CDG55_06290 4215f93a809236f1918410fc694998a8 182 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 5 178 6.1E-35 T 13-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 CDG55_06290 4215f93a809236f1918410fc694998a8 182 Gene3D G3DSA:2.60.450.10 57 181 2.1E-8 T 13-10-2018 CDG55_01760 0e7f069250e227b5ea50d0df5f5c9e82 62 Pfam PF12088 Protein of unknown function (DUF3565) 6 61 2.3E-32 T 13-10-2018 IPR021948 Protein of unknown function DUF3565 CDG55_00780 9fe4d0ea761df04a66fdfa4e5030d62a 192 Pfam PF04214 Protein of unknown function, DUF 91 159 7.0E-25 T 13-10-2018 IPR007332 Protein of unknown function DUF411 CDG55_04140 37c7c54802fb3ce85762c03f7de67c9e 201 Gene3D G3DSA:3.90.79.10 5 181 2.2E-43 T 13-10-2018 CDG55_04140 37c7c54802fb3ce85762c03f7de67c9e 201 SUPERFAMILY SSF55811 19 177 3.93E-27 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_04140 37c7c54802fb3ce85762c03f7de67c9e 201 Pfam PF00293 NUDIX domain 25 136 1.8E-11 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_08355 04c67fc8f893fd625323d25d9972c084 168 Gene3D G3DSA:3.90.70.10 11 167 1.7E-6 T 13-10-2018 CDG55_08355 04c67fc8f893fd625323d25d9972c084 168 Pfam PF03412 Peptidase C39 family 13 69 1.0E-5 T 13-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 CDG55_07350 ec1cb04000070ccfa683b1c411842def 388 Pfam PF08331 Domain of unknown function (DUF1730) 76 154 1.8E-23 T 13-10-2018 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 CDG55_07350 ec1cb04000070ccfa683b1c411842def 388 Pfam PF13484 4Fe-4S double cluster binding domain 206 270 1.8E-20 T 13-10-2018 CDG55_07350 ec1cb04000070ccfa683b1c411842def 388 SUPERFAMILY SSF46548 153 270 8.37E-16 T 13-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 CDG55_07350 ec1cb04000070ccfa683b1c411842def 388 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 21 329 46.023 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CDG55_07350 ec1cb04000070ccfa683b1c411842def 388 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 28 363 4.8E-140 T 13-10-2018 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 CDG55_10730 a9ebe3d2a626e97ce5d0304dddae1577 301 Pfam PF01171 PP-loop family 49 212 2.9E-15 T 13-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 CDG55_10730 a9ebe3d2a626e97ce5d0304dddae1577 301 SUPERFAMILY SSF52402 26 244 5.12E-54 T 13-10-2018 CDG55_10730 a9ebe3d2a626e97ce5d0304dddae1577 301 PIRSF PIRSF004976 6 283 6.2E-70 T 13-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 CDG55_10730 a9ebe3d2a626e97ce5d0304dddae1577 301 Gene3D G3DSA:3.40.50.620 21 272 8.6E-46 T 13-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CDG55_10730 a9ebe3d2a626e97ce5d0304dddae1577 301 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 17 279 55.085 T 13-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 CDG55_00770 72da0f3ccab85c2b9e47646e10fe7af4 259 Gene3D G3DSA:3.40.190.10 111 220 8.4E-87 T 13-10-2018 CDG55_00770 72da0f3ccab85c2b9e47646e10fe7af4 259 SUPERFAMILY SSF53850 28 257 3.86E-36 T 13-10-2018 CDG55_00770 72da0f3ccab85c2b9e47646e10fe7af4 259 Pfam PF13531 Bacterial extracellular solute-binding protein 33 256 8.2E-33 T 13-10-2018 CDG55_00770 72da0f3ccab85c2b9e47646e10fe7af4 259 Gene3D G3DSA:3.40.190.10 33 256 8.4E-87 T 13-10-2018 CDG55_07040 9df7f056ea243f763f295e67ffb12de6 157 Gene3D G3DSA:1.10.10.10 1 144 3.3E-52 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_07040 9df7f056ea243f763f295e67ffb12de6 157 Pfam PF02082 Transcriptional regulator 1 83 4.6E-30 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CDG55_07040 9df7f056ea243f763f295e67ffb12de6 157 SUPERFAMILY SSF46785 2 132 4.76E-37 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_07040 9df7f056ea243f763f295e67ffb12de6 157 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 1.3E-45 T 13-10-2018 IPR000944 Transcription regulator Rrf2-type CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PIRSF PIRSF016599 3 486 2.8E-180 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 Gene3D G3DSA:3.40.630.10 375 486 3.3E-20 T 13-10-2018 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 Pfam PF01546 Peptidase family M20/M25/M40 74 483 1.2E-17 T 13-10-2018 IPR002933 Peptidase M20 GO:0016787 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 SUPERFAMILY SSF53187 14 483 3.83E-59 T 13-10-2018 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 10 485 8.5E-155 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 253 272 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 137 154 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 103 121 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 431 447 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 161 179 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 453 475 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 366 384 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 82 101 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 PRINTS PR00934 X-His dipeptidase (M25) signature 208 225 1.5E-66 T 13-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 CDG55_07895 8e6db7036d6bcf89745c1978dd2c63d9 486 Gene3D G3DSA:3.40.630.10 3 229 4.1E-57 T 13-10-2018 CDG55_07765 a4435445c41c687d969feef327ba8ea2 498 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 438 9.0E-114 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CDG55_07765 a4435445c41c687d969feef327ba8ea2 498 Gene3D G3DSA:1.20.1730.10 23 497 8.1E-89 T 13-10-2018 IPR038377 Sodium/glucose symporter superfamily CDG55_07765 a4435445c41c687d969feef327ba8ea2 498 Pfam PF00474 Sodium:solute symporter family 35 438 1.3E-125 T 13-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 CDG55_07765 a4435445c41c687d969feef327ba8ea2 498 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 492 9.7E-214 T 13-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 CDG55_00085 b059266aca76fa53127f1920cf79e735 298 Pfam PF15931 Domain of unknown function (DUF4747) 22 265 5.1E-13 T 13-10-2018 IPR031832 Protein of unknown function DUF4747 CDG55_13645 4f448351fecee46cd37efe79cf01539f 161 SUPERFAMILY SSF54637 11 157 4.11E-22 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_13645 4f448351fecee46cd37efe79cf01539f 161 Pfam PF14539 Domain of unknown function (DUF4442) 13 152 2.2E-19 T 13-10-2018 IPR027961 Protein of unknown function DUF4442 CDG55_13645 4f448351fecee46cd37efe79cf01539f 161 Gene3D G3DSA:3.10.129.10 10 159 5.9E-31 T 13-10-2018 CDG55_04175 75332eded73beb1063394cbee0345419 91 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 5 88 3.6E-18 T 13-10-2018 IPR014543 Uncharacterised conserved protein UCP028291 CDG55_04175 75332eded73beb1063394cbee0345419 91 Gene3D G3DSA:3.30.310.50 1 91 2.3E-23 T 13-10-2018 CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 243 1.4E-63 T 13-10-2018 CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 1.1E-12 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 8.7E-43 T 13-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 Gene3D G3DSA:3.40.50.720 1 244 1.8E-79 T 13-10-2018 CDG55_02580 7f9a6d42335862fde3c3afd1f3556ddb 244 SUPERFAMILY SSF51735 3 244 6.4E-81 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_14610 10b9c6cbc3d60b6f7f96024b26ec592b 419 Pfam PF07804 HipA-like C-terminal domain 164 383 9.0E-40 T 13-10-2018 IPR012893 HipA-like, C-terminal CDG55_14610 10b9c6cbc3d60b6f7f96024b26ec592b 419 Pfam PF13657 HipA N-terminal domain 16 121 1.8E-10 T 13-10-2018 IPR017508 HipA, N-terminal subdomain 1 CDG55_09135 9b3928d955d5d029c000bbbe9b6de44b 377 Pfam PF02698 DUF218 domain 213 360 4.4E-21 T 13-10-2018 IPR003848 Domain of unknown function DUF218 CDG55_09310 937871d6b6fd83064add4ec6f211f3fe 100 Gene3D G3DSA:3.30.70.100 1 93 1.4E-31 T 13-10-2018 CDG55_09310 937871d6b6fd83064add4ec6f211f3fe 100 SUPERFAMILY SSF54909 1 98 1.95E-26 T 13-10-2018 IPR011008 Dimeric alpha-beta barrel CDG55_04675 2e491d85a493f6a4476a1573198aaec6 312 SUPERFAMILY SSF161098 90 296 1.03E-15 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_04675 2e491d85a493f6a4476a1573198aaec6 312 Gene3D G3DSA:1.10.3720.10 84 306 1.4E-20 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_04675 2e491d85a493f6a4476a1573198aaec6 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 309 1.9E-37 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_12150 2491615ba8521991d42fa5f6b9202dc4 141 SUPERFAMILY SSF101738 6 118 1.44E-48 T 13-10-2018 IPR036760 SspB-like superfamily CDG55_12150 2491615ba8521991d42fa5f6b9202dc4 141 Gene3D G3DSA:2.30.30.220 3 133 2.7E-51 T 13-10-2018 IPR036760 SspB-like superfamily CDG55_12150 2491615ba8521991d42fa5f6b9202dc4 141 PIRSF PIRSF005276 4 141 1.4E-53 T 13-10-2018 IPR007481 Stringent starvation protein B CDG55_12150 2491615ba8521991d42fa5f6b9202dc4 141 Pfam PF04386 Stringent starvation protein B 10 131 1.6E-35 T 13-10-2018 IPR007481 Stringent starvation protein B CDG55_01490 794296496dec2479892f6e48f3fc095d 173 Pfam PF04608 Phosphatidylglycerophosphatase A 25 168 2.5E-47 T 13-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 CDG55_01490 794296496dec2479892f6e48f3fc095d 173 SUPERFAMILY SSF101307 18 170 2.75E-41 T 13-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 CDG55_01490 794296496dec2479892f6e48f3fc095d 173 PIRSF PIRSF006162 13 173 2.0E-50 T 13-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 CDG55_10215 e8f924581dcaf25dd8d4d220e2297d69 104 SUPERFAMILY SSF102705 2 100 3.69E-24 T 13-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CDG55_10215 e8f924581dcaf25dd8d4d220e2297d69 104 Gene3D G3DSA:3.30.70.120 1 103 1.0E-40 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CDG55_13815 ba3ab9c241dbef852dc720f07b7c28a4 203 Gene3D G3DSA:3.90.79.10 5 202 3.3E-51 T 13-10-2018 CDG55_13815 ba3ab9c241dbef852dc720f07b7c28a4 203 SUPERFAMILY SSF55811 16 199 7.45E-39 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_13815 ba3ab9c241dbef852dc720f07b7c28a4 203 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 14 196 1.5E-40 T 13-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 CDG55_13815 ba3ab9c241dbef852dc720f07b7c28a4 203 Pfam PF00293 NUDIX domain 55 183 1.1E-12 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_05465 a801d4a21b4152a790facbd1fd84f72d 559 Pfam PF00884 Sulfatase 39 446 2.4E-72 T 13-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 CDG55_05465 a801d4a21b4152a790facbd1fd84f72d 559 SUPERFAMILY SSF53649 37 552 2.76E-132 T 13-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 CDG55_05465 a801d4a21b4152a790facbd1fd84f72d 559 Gene3D G3DSA:3.30.1120.10 483 558 1.0E-17 T 13-10-2018 CDG55_05465 a801d4a21b4152a790facbd1fd84f72d 559 Gene3D G3DSA:3.40.720.10 35 475 1.8E-127 T 13-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 CDG55_03000 61833e6828ff8cdcded3fd7f7e1612a4 259 Pfam PF02405 Permease MlaE 41 253 7.6E-67 T 13-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 CDG55_03000 61833e6828ff8cdcded3fd7f7e1612a4 259 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 4 258 2.2E-77 T 13-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria CDG55_02315 73824d9f63eabca31b3de862c81fe2de 105 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 3 100 9.3E-20 T 13-10-2018 IPR008407 Branched-chain amino acid transport, AzlD CDG55_05340 e825a92edb189d2b4d8bd697f947a15d 418 Pfam PF13641 Glycosyltransferase like family 2 53 277 1.8E-36 T 13-10-2018 CDG55_05340 e825a92edb189d2b4d8bd697f947a15d 418 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 12 416 3.9E-180 T 13-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 CDG55_05340 e825a92edb189d2b4d8bd697f947a15d 418 SUPERFAMILY SSF53448 39 323 3.31E-59 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_05340 e825a92edb189d2b4d8bd697f947a15d 418 Gene3D G3DSA:3.90.550.10 31 267 1.1E-40 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_10570 617b066390469bea7644fc4cc1a067e6 229 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 14 213 1.7E-65 T 13-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 CDG55_10570 617b066390469bea7644fc4cc1a067e6 229 Gene3D G3DSA:1.10.3720.10 2 225 5.0E-52 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_10570 617b066390469bea7644fc4cc1a067e6 229 SUPERFAMILY SSF161098 6 219 4.32E-45 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_10570 617b066390469bea7644fc4cc1a067e6 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 221 1.3E-17 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_01495 c59200780c42273882bd8abd9409f118 305 Gene3D G3DSA:3.30.1330.10 1 141 8.2E-48 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CDG55_01495 c59200780c42273882bd8abd9409f118 305 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 304 2.2E-106 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 CDG55_01495 c59200780c42273882bd8abd9409f118 305 PIRSF PIRSF005303 1 304 5.1E-93 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 CDG55_01495 c59200780c42273882bd8abd9409f118 305 SUPERFAMILY SSF56042 140 287 4.34E-33 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CDG55_01495 c59200780c42273882bd8abd9409f118 305 Pfam PF02769 AIR synthase related protein, C-terminal domain 185 283 2.5E-6 T 13-10-2018 IPR010918 PurM-like, C-terminal domain CDG55_01495 c59200780c42273882bd8abd9409f118 305 Pfam PF00586 AIR synthase related protein, N-terminal domain 25 135 4.3E-27 T 13-10-2018 IPR016188 PurM-like, N-terminal domain CDG55_01495 c59200780c42273882bd8abd9409f118 305 SUPERFAMILY SSF55326 2 136 3.4E-37 T 13-10-2018 IPR036921 PurM-like, N-terminal domain superfamily CDG55_01495 c59200780c42273882bd8abd9409f118 305 Gene3D G3DSA:3.90.650.10 142 305 5.5E-48 T 13-10-2018 IPR036676 PurM-like, C-terminal domain superfamily CDG55_01495 c59200780c42273882bd8abd9409f118 305 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 304 29.277 T 13-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 CDG55_10420 6a2a6561988cab0e13865a65286fe4d2 370 Pfam PF12698 ABC-2 family transporter protein 19 357 1.7E-33 T 13-10-2018 CDG55_07050 76c1f787ddfc64aa2ae66865c58c080b 151 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 22 137 3.4E-31 T 13-10-2018 IPR008769 Poly granule associated CDG55_10405 0008a4fc1fb7644cadd0a1e2c4bac231 498 Pfam PF02321 Outer membrane efflux protein 44 277 5.1E-15 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CDG55_10405 0008a4fc1fb7644cadd0a1e2c4bac231 498 Pfam PF02321 Outer membrane efflux protein 304 478 1.7E-21 T 13-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 CDG55_10405 0008a4fc1fb7644cadd0a1e2c4bac231 498 SUPERFAMILY SSF56954 13 481 4.45E-60 T 13-10-2018 CDG55_14440 6df80884117421a21c4181f6f9a2d96c 75 SMART SM00530 5 61 1.2E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_14440 6df80884117421a21c4181f6f9a2d96c 75 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 65 2.1E-19 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_14440 6df80884117421a21c4181f6f9a2d96c 75 SUPERFAMILY SSF47413 1 64 1.42E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_14440 6df80884117421a21c4181f6f9a2d96c 75 Gene3D G3DSA:1.10.260.40 1 71 2.3E-11 T 13-10-2018 CDG55_03355 f817ad6b09a95f8d33c1c6cc2898e85a 199 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 5 193 2.0E-42 T 13-10-2018 IPR010089 Flavoprotein WrbA-like GO:0003955|GO:0010181 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 CDG55_03355 f817ad6b09a95f8d33c1c6cc2898e85a 199 Gene3D G3DSA:3.40.50.360 1 196 1.1E-60 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_03355 f817ad6b09a95f8d33c1c6cc2898e85a 199 Pfam PF03358 NADPH-dependent FMN reductase 12 125 1.3E-8 T 13-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 CDG55_03355 f817ad6b09a95f8d33c1c6cc2898e85a 199 SUPERFAMILY SSF52218 4 195 3.54E-59 T 13-10-2018 IPR029039 Flavoprotein-like superfamily CDG55_02015 bdfcdb515b6a29a044bbd9d1719597e2 275 SUPERFAMILY SSF53335 34 274 1.82E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_02015 bdfcdb515b6a29a044bbd9d1719597e2 275 Pfam PF13649 Methyltransferase domain 68 159 1.6E-9 T 13-10-2018 CDG55_02015 bdfcdb515b6a29a044bbd9d1719597e2 275 Gene3D G3DSA:3.40.50.150 33 275 6.7E-26 T 13-10-2018 CDG55_10850 1567071597263afb9565e855dbda5a9e 307 PIRSF PIRSF016660 1 306 9.0E-130 T 13-10-2018 IPR008526 Inner membrane protein YedI CDG55_10850 1567071597263afb9565e855dbda5a9e 307 Pfam PF05661 Protein of unknown function (DUF808) 3 294 6.8E-117 T 13-10-2018 IPR008526 Inner membrane protein YedI CDG55_02750 eec96955399dd1e1447e716cef65d62a 347 Hamap MF_00790 Lipase chaperone [lifO]. 1 335 18.978 T 13-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 CDG55_02750 eec96955399dd1e1447e716cef65d62a 347 SUPERFAMILY SSF158855 67 338 5.1E-83 T 13-10-2018 CDG55_02750 eec96955399dd1e1447e716cef65d62a 347 Pfam PF03280 Proteobacterial lipase chaperone protein 136 326 1.5E-47 T 13-10-2018 IPR004961 Lipase chaperone GO:0006457|GO:0016020|GO:0051082 CDG55_10990 c632d97689b678764981afd3e41e6861 462 Pfam PF13520 Amino acid permease 54 442 9.3E-40 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CDG55_10990 c632d97689b678764981afd3e41e6861 462 Gene3D G3DSA:1.20.1740.10 11 459 6.3E-74 T 13-10-2018 CDG55_10990 c632d97689b678764981afd3e41e6861 462 PIRSF PIRSF006060 5 461 7.1E-65 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CDG55_15110 ef7be1286ef00a499b0f1683f6d6d7cc 386 Gene3D G3DSA:3.30.1490.330 258 342 2.3E-18 T 13-10-2018 CDG55_15110 ef7be1286ef00a499b0f1683f6d6d7cc 386 SUPERFAMILY SSF52440 173 274 6.62E-31 T 13-10-2018 IPR016185 Pre-ATP-grasp domain superfamily CDG55_15110 ef7be1286ef00a499b0f1683f6d6d7cc 386 SUPERFAMILY SSF56059 6 383 1.91E-73 T 13-10-2018 CDG55_15110 ef7be1286ef00a499b0f1683f6d6d7cc 386 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 384 2.3E-124 T 13-10-2018 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain CDG55_06045 161911235198f4345858ae863bb490fd 268 Gene3D G3DSA:3.20.20.70 2 267 7.2E-98 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_06045 161911235198f4345858ae863bb490fd 268 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 7 263 35.18 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 CDG55_06045 161911235198f4345858ae863bb490fd 268 Pfam PF00218 Indole-3-glycerol phosphate synthase 9 261 3.9E-99 T 13-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 CDG55_06045 161911235198f4345858ae863bb490fd 268 SUPERFAMILY SSF51366 16 263 1.14E-85 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CDG55_11720 869c6032941430422d1269b6236d1683 269 Gene3D G3DSA:3.60.15.10 3 269 9.2E-51 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_11720 869c6032941430422d1269b6236d1683 269 SMART SM00849 31 260 6.5E-16 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_11720 869c6032941430422d1269b6236d1683 269 Pfam PF00753 Metallo-beta-lactamase superfamily 32 226 1.7E-17 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_11720 869c6032941430422d1269b6236d1683 269 SUPERFAMILY SSF56281 5 254 1.97E-30 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_03880 8781b268fcd6337d887aa60e2b8211ad 205 SUPERFAMILY SSF47616 77 202 1.17E-33 T 13-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily CDG55_03880 8781b268fcd6337d887aa60e2b8211ad 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 133 194 2.9E-6 T 13-10-2018 IPR004046 Glutathione S-transferase, C-terminal CDG55_03880 8781b268fcd6337d887aa60e2b8211ad 205 Gene3D G3DSA:1.20.1050.10 87 194 9.2E-81 T 13-10-2018 CDG55_03880 8781b268fcd6337d887aa60e2b8211ad 205 Gene3D G3DSA:3.40.30.10 2 203 9.2E-81 T 13-10-2018 CDG55_03880 8781b268fcd6337d887aa60e2b8211ad 205 Pfam PF02798 Glutathione S-transferase, N-terminal domain 6 80 1.9E-14 T 13-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 CDG55_03880 8781b268fcd6337d887aa60e2b8211ad 205 SUPERFAMILY SSF52833 1 83 4.66E-22 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_05170 823bb96ad0accee93cb836d10c668fb0 372 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 345 1.4E-130 T 13-10-2018 IPR006321 Pilus retraction protein PilT GO:0005524 CDG55_05170 823bb96ad0accee93cb836d10c668fb0 372 Pfam PF00437 Type II/IV secretion system protein 10 270 4.1E-37 T 13-10-2018 IPR001482 Type II/IV secretion system protein CDG55_05170 823bb96ad0accee93cb836d10c668fb0 372 Gene3D G3DSA:3.30.450.90 1 100 2.6E-25 T 13-10-2018 CDG55_05170 823bb96ad0accee93cb836d10c668fb0 372 Gene3D G3DSA:3.40.50.300 103 357 8.9E-87 T 13-10-2018 CDG55_05170 823bb96ad0accee93cb836d10c668fb0 372 SUPERFAMILY SSF52540 4 338 4.55E-68 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_05170 823bb96ad0accee93cb836d10c668fb0 372 SMART SM00382 123 248 9.5E-5 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_03445 d12ce98367177b1b52bbd9030b862081 238 Pfam PF11008 Protein of unknown function (DUF2846) 56 163 4.8E-24 T 13-10-2018 IPR022548 Domain of unknown function DUF2846 CDG55_08685 432919911836f064050481821fca09f4 290 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 160 281 2.1E-36 T 13-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 CDG55_08685 432919911836f064050481821fca09f4 290 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 5 157 5.8E-39 T 13-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 CDG55_08685 432919911836f064050481821fca09f4 290 Gene3D G3DSA:1.10.1040.10 160 289 1.7E-30 T 13-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 CDG55_08685 432919911836f064050481821fca09f4 290 SUPERFAMILY SSF48179 160 286 2.27E-27 T 13-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 CDG55_08685 432919911836f064050481821fca09f4 290 Gene3D G3DSA:3.40.50.720 1 159 9.9E-43 T 13-10-2018 CDG55_08685 432919911836f064050481821fca09f4 290 PIRSF PIRSF000103 1 287 9.0E-58 T 13-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 CDG55_08685 432919911836f064050481821fca09f4 290 SUPERFAMILY SSF51735 3 158 1.5E-38 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_14215 810335ccc18ed7075b858870892ad81d 383 Pfam PF01476 LysM domain 56 101 3.9E-14 T 13-10-2018 IPR018392 LysM domain CDG55_14215 810335ccc18ed7075b858870892ad81d 383 Gene3D G3DSA:3.10.350.10 55 100 3.4E-13 T 13-10-2018 IPR036779 LysM domain superfamily CDG55_14215 810335ccc18ed7075b858870892ad81d 383 SUPERFAMILY SSF54106 54 102 1.7E-7 T 13-10-2018 CDG55_05660 38bb68cc3ea9b74e07751bf90a3634ec 377 Pfam PF04087 Domain of unknown function (DUF389) 87 222 1.5E-28 T 13-10-2018 IPR005240 Protein of unknown function DUF389 CDG55_05660 38bb68cc3ea9b74e07751bf90a3634ec 377 TIGRFAM TIGR00341 TIGR00341: TIGR00341 family protein 57 266 4.1E-28 T 13-10-2018 CDG55_11765 719543c00f37798a3ed7eee6d5c6a689 291 PIRSF PIRSF007580 2 279 4.2E-67 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 CDG55_11765 719543c00f37798a3ed7eee6d5c6a689 291 Pfam PF10118 Predicted metal-dependent hydrolase 16 260 1.2E-72 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 CDG55_11765 719543c00f37798a3ed7eee6d5c6a689 291 SUPERFAMILY SSF47240 5 207 1.73E-6 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_08045 b965d98217132aa42a21e2d7d450e066 260 Pfam PF13614 AAA domain 3 177 8.3E-60 T 13-10-2018 IPR025669 AAA domain CDG55_08045 b965d98217132aa42a21e2d7d450e066 260 Gene3D G3DSA:3.40.50.300 1 259 8.6E-80 T 13-10-2018 CDG55_08045 b965d98217132aa42a21e2d7d450e066 260 SUPERFAMILY SSF52540 1 252 6.56E-64 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_08045 b965d98217132aa42a21e2d7d450e066 260 PIRSF PIRSF009320 2 84 6.9E-16 T 13-10-2018 CDG55_08045 b965d98217132aa42a21e2d7d450e066 260 PIRSF PIRSF009320 85 259 7.5E-9 T 13-10-2018 CDG55_04740 7f7bf2851e3e4175f0a5d1610803c4aa 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 9.6E-16 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CDG55_04740 7f7bf2851e3e4175f0a5d1610803c4aa 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 2 76 2.5E-29 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CDG55_04740 7f7bf2851e3e4175f0a5d1610803c4aa 78 Gene3D G3DSA:1.10.1200.10 1 77 1.5E-25 T 13-10-2018 IPR036736 ACP-like superfamily CDG55_04740 7f7bf2851e3e4175f0a5d1610803c4aa 78 SUPERFAMILY SSF47336 2 77 2.22E-22 T 13-10-2018 IPR036736 ACP-like superfamily CDG55_04740 7f7bf2851e3e4175f0a5d1610803c4aa 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 20.434 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CDG55_04740 7f7bf2851e3e4175f0a5d1610803c4aa 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 77 3.0E-14 T 13-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 CDG55_04370 87d184531ca9defd302213d86eda9732 631 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 64 121 1.2E-20 T 13-10-2018 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04370 87d184531ca9defd302213d86eda9732 631 Pfam PF00361 Proton-conducting membrane transporter 134 413 3.2E-87 T 13-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 247 273 2.9E-50 T 13-10-2018 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 225 246 2.9E-50 T 13-10-2018 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 425 444 2.9E-50 T 13-10-2018 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 82 107 2.9E-50 T 13-10-2018 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 157 178 2.9E-50 T 13-10-2018 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 110 130 2.9E-50 T 13-10-2018 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 315 327 2.9E-50 T 13-10-2018 CDG55_04370 87d184531ca9defd302213d86eda9732 631 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 4 623 2.0E-205 T 13-10-2018 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 424 446 7.5E-9 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 84 104 7.5E-9 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 58 82 7.5E-9 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CDG55_04370 87d184531ca9defd302213d86eda9732 631 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 265 287 7.5E-9 T 13-10-2018 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 CDG55_06310 be6b51540abeb9f29801d4f41251ca8e 205 SUPERFAMILY SSF51161 50 203 6.54E-40 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_06310 be6b51540abeb9f29801d4f41251ca8e 205 Gene3D G3DSA:2.160.10.10 40 203 6.4E-46 T 13-10-2018 CDG55_06310 be6b51540abeb9f29801d4f41251ca8e 205 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 150 184 7.4E-7 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_06310 be6b51540abeb9f29801d4f41251ca8e 205 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 74 106 2.9E-4 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_02575 9b49c9d0e70aab671b2d1381e6526b85 75 SUPERFAMILY SSF47336 3 74 1.44E-12 T 13-10-2018 IPR036736 ACP-like superfamily CDG55_02575 9b49c9d0e70aab671b2d1381e6526b85 75 Gene3D G3DSA:1.10.1200.10 2 75 9.8E-17 T 13-10-2018 IPR036736 ACP-like superfamily CDG55_02575 9b49c9d0e70aab671b2d1381e6526b85 75 Pfam PF00550 Phosphopantetheine attachment site 4 62 7.2E-6 T 13-10-2018 IPR009081 Phosphopantetheine binding ACP domain CDG55_02150 14ec8b5fb9092f3c277a14e10b5ffcbd 239 Gene3D G3DSA:2.70.40.10 1 171 4.4E-24 T 13-10-2018 IPR036157 dUTPase-like superfamily CDG55_02150 14ec8b5fb9092f3c277a14e10b5ffcbd 239 Pfam PF00692 dUTPase 58 144 1.1E-6 T 13-10-2018 IPR029054 dUTPase-like CDG55_02150 14ec8b5fb9092f3c277a14e10b5ffcbd 239 SUPERFAMILY SSF51283 1 145 3.53E-21 T 13-10-2018 IPR036157 dUTPase-like superfamily CDG55_07215 e9f2c3c1f59a3b4e0d7ff291a4a5f0ca 159 Pfam PF04612 Type II secretion system (T2SS), protein M 16 158 2.1E-16 T 13-10-2018 IPR007690 Type II secretion system, protein M GO:0009306 CDG55_07215 e9f2c3c1f59a3b4e0d7ff291a4a5f0ca 159 SUPERFAMILY SSF103054 92 156 8.37E-6 T 13-10-2018 IPR023229 Type II secretion system protein M, periplasmic domain superfamily CDG55_06915 f8103e40247b800c2c3b5535a7f5edd5 157 Gene3D G3DSA:2.40.128.520 24 156 7.6E-15 T 13-10-2018 CDG55_06915 f8103e40247b800c2c3b5535a7f5edd5 157 Pfam PF09917 Uncharacterized protein conserved in bacteria (DUF2147) 29 151 3.6E-20 T 13-10-2018 IPR019223 Domain of unknown function DUF2147 CDG55_12665 994a9c3b44eca4bf7e361b10a75ddd05 149 Pfam PF03960 ArsC family 15 122 4.5E-15 T 13-10-2018 IPR006660 Arsenate reductase-like CDG55_12665 994a9c3b44eca4bf7e361b10a75ddd05 149 Gene3D G3DSA:3.40.30.10 9 149 1.3E-54 T 13-10-2018 CDG55_12665 994a9c3b44eca4bf7e361b10a75ddd05 149 SUPERFAMILY SSF52833 12 146 1.19E-35 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_12665 994a9c3b44eca4bf7e361b10a75ddd05 149 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 12 124 3.0E-38 T 13-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 CDG55_07725 73d88f22380272c548219f063c9c1167 192 Pfam PF04264 YceI-like domain 26 188 1.2E-40 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CDG55_07725 73d88f22380272c548219f063c9c1167 192 SUPERFAMILY SSF101874 23 189 5.23E-50 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily CDG55_07725 73d88f22380272c548219f063c9c1167 192 Gene3D G3DSA:2.40.128.110 24 190 9.6E-50 T 13-10-2018 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily CDG55_07725 73d88f22380272c548219f063c9c1167 192 SMART SM00867 25 189 2.5E-65 T 13-10-2018 IPR007372 Lipid/polyisoprenoid-binding, YceI-like CDG55_14125 ce70075ada8ae5ea40b5d0b33742b06f 333 TIGRFAM TIGR01139 cysK: cysteine synthase A 22 326 4.4E-131 T 13-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CDG55_14125 ce70075ada8ae5ea40b5d0b33742b06f 333 SUPERFAMILY SSF53686 18 325 3.54E-95 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDG55_14125 ce70075ada8ae5ea40b5d0b33742b06f 333 Gene3D G3DSA:3.40.50.1100 58 160 1.4E-121 T 13-10-2018 CDG55_14125 ce70075ada8ae5ea40b5d0b33742b06f 333 Gene3D G3DSA:3.40.50.1100 25 321 1.4E-121 T 13-10-2018 CDG55_14125 ce70075ada8ae5ea40b5d0b33742b06f 333 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 315 2.2E-62 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CDG55_14125 ce70075ada8ae5ea40b5d0b33742b06f 333 TIGRFAM TIGR01136 cysKM: cysteine synthase 22 326 6.9E-127 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CDG55_01130 e2f5503060cef6d5567058c0eb9ea705 141 Pfam PF03203 MerC mercury resistance protein 10 121 1.4E-18 T 13-10-2018 IPR004891 Mercury transport protein MerC GO:0015097|GO:0015694|GO:0016020 CDG55_01130 e2f5503060cef6d5567058c0eb9ea705 141 ProDom PD007347 MERC PLASMID MEMBRANE INNER UPTAKE MERCURY HGII RESISTANCE PRECURSOR TRANSMEMBRANE 21 141 4.0E-64 T 13-10-2018 IPR004891 Mercury transport protein MerC GO:0015097|GO:0015694|GO:0016020 CDG55_10390 2ac7b8462527a2cedc701d7c7a97d168 156 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 4 150 26.819 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 CDG55_10390 2ac7b8462527a2cedc701d7c7a97d168 156 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 21 147 2.4E-43 T 13-10-2018 IPR003791 Protein of unknown function UPF0178 CDG55_03520 56774d3b247e8a087d00fb0bf7d023b3 270 Pfam PF01553 Acyltransferase 73 191 4.0E-15 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_03520 56774d3b247e8a087d00fb0bf7d023b3 270 SUPERFAMILY SSF69593 31 199 6.93E-21 T 13-10-2018 CDG55_03520 56774d3b247e8a087d00fb0bf7d023b3 270 SMART SM00563 84 195 7.7E-15 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_14655 44f1b89071c1a6ba3040042edac77c6d 295 Pfam PF00892 EamA-like transporter family 4 142 3.9E-8 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_14655 44f1b89071c1a6ba3040042edac77c6d 295 Pfam PF00892 EamA-like transporter family 155 293 3.0E-6 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_14655 44f1b89071c1a6ba3040042edac77c6d 295 SUPERFAMILY SSF103481 200 294 5.75E-10 T 13-10-2018 CDG55_14655 44f1b89071c1a6ba3040042edac77c6d 295 SUPERFAMILY SSF103481 47 146 2.09E-6 T 13-10-2018 CDG55_05320 0eb6c2ae24c6196a2004d262aee8f3ca 113 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 16 105 2.4E-32 T 13-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CDG55_05320 0eb6c2ae24c6196a2004d262aee8f3ca 113 Gene3D G3DSA:3.10.50.40 1 113 9.6E-44 T 13-10-2018 CDG55_05320 0eb6c2ae24c6196a2004d262aee8f3ca 113 SUPERFAMILY SSF54534 4 111 8.93E-41 T 13-10-2018 CDG55_14095 459983351e4263437f074157fe838bba 117 Pfam PF01042 Endoribonuclease L-PSP 4 115 1.3E-26 T 13-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 CDG55_14095 459983351e4263437f074157fe838bba 117 SUPERFAMILY SSF55298 10 117 9.42E-32 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CDG55_14095 459983351e4263437f074157fe838bba 117 Gene3D G3DSA:3.30.1330.40 1 117 1.8E-39 T 13-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 CDG55_08440 cadc11dcf97fd27cf24194f593846228 120 Pfam PF02694 Uncharacterised BCR, YnfA/UPF0060 family 12 115 5.8E-33 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 CDG55_08440 cadc11dcf97fd27cf24194f593846228 120 Hamap MF_00010 UPF0060 membrane protein YnfA [ynfA]. 12 116 21.177 T 13-10-2018 IPR003844 Uncharacterised protein family UPF0060 GO:0016020 CDG55_03150 c0fb2b5d500a8eda4e31f05ed386cfdd 65 Gene3D G3DSA:1.10.287.310 1 63 2.9E-22 T 13-10-2018 CDG55_03150 c0fb2b5d500a8eda4e31f05ed386cfdd 65 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 2.7E-17 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03150 c0fb2b5d500a8eda4e31f05ed386cfdd 65 SUPERFAMILY SSF46561 1 63 3.4E-19 T 13-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03150 c0fb2b5d500a8eda4e31f05ed386cfdd 65 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 16.786 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_03150 c0fb2b5d500a8eda4e31f05ed386cfdd 65 Pfam PF00831 Ribosomal L29 protein 4 60 2.4E-19 T 13-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 CDG55_00495 8115b825f35265510df96bb27800eff5 100 Gene3D G3DSA:3.40.120.10 2 83 7.6E-24 T 13-10-2018 CDG55_00495 8115b825f35265510df96bb27800eff5 100 SUPERFAMILY SSF53738 2 81 5.1E-22 T 13-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_00495 8115b825f35265510df96bb27800eff5 100 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 81 1.1E-22 T 13-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 CDG55_14790 4405d689f99e961f5cf89d007e1857fd 422 Pfam PF01943 Polysaccharide biosynthesis protein 9 268 9.7E-8 T 13-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 CDG55_01820 f99d8758fa5029673d6fce1403401b17 234 SUPERFAMILY SSF51261 90 230 1.99E-53 T 13-10-2018 IPR011055 Duplicated hybrid motif CDG55_01820 f99d8758fa5029673d6fce1403401b17 234 Gene3D G3DSA:2.70.70.10 78 233 4.8E-46 T 13-10-2018 IPR011055 Duplicated hybrid motif CDG55_01820 f99d8758fa5029673d6fce1403401b17 234 Pfam PF01551 Peptidase family M23 132 226 1.6E-32 T 13-10-2018 IPR016047 Peptidase M23 CDG55_06875 170d0a1d2df8c005a3fc3c3d73d5884f 321 Gene3D G3DSA:3.40.50.1820 18 320 1.4E-41 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_06875 170d0a1d2df8c005a3fc3c3d73d5884f 321 SUPERFAMILY SSF53474 30 319 2.81E-29 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_06875 170d0a1d2df8c005a3fc3c3d73d5884f 321 Pfam PF12146 Serine aminopeptidase, S33 45 251 1.0E-17 T 13-10-2018 IPR022742 Serine aminopeptidase, S33 CDG55_03005 5b221a123192da679518852c06c82f1a 225 Pfam PF02470 MlaD protein 38 164 3.3E-31 T 13-10-2018 IPR003399 Mce/MlaD CDG55_07945 1c6104b282d85f5d185c5e519b2a6a09 186 Pfam PF13358 DDE superfamily endonuclease 57 184 5.4E-24 T 13-10-2018 IPR038717 Tc1-like transposase, DDE domain CDG55_07945 1c6104b282d85f5d185c5e519b2a6a09 186 Gene3D G3DSA:3.30.420.470 19 186 5.2E-11 T 13-10-2018 CDG55_12450 ba060b7ddb2c310582846b7bd882b2a4 143 SUPERFAMILY SSF55729 2 138 1.24E-20 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_12450 ba060b7ddb2c310582846b7bd882b2a4 143 Pfam PF13673 Acetyltransferase (GNAT) domain 29 140 1.8E-27 T 13-10-2018 IPR000182 GNAT domain CDG55_12450 ba060b7ddb2c310582846b7bd882b2a4 143 Gene3D G3DSA:3.40.630.30 1 131 2.9E-19 T 13-10-2018 CDG55_11310 911b57a964091d4071bd34bd3730d5e8 163 Pfam PF04093 rod shape-determining protein MreD 15 156 1.6E-11 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 CDG55_11310 911b57a964091d4071bd34bd3730d5e8 163 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 14 158 4.6E-22 T 13-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 CDG55_13055 a4a03be6760704187241cd260761c0e9 283 Pfam PF09844 Uncharacterized conserved protein (COG2071) 47 238 2.2E-8 T 13-10-2018 IPR018644 Protein of unknown function DUF2071 CDG55_00825 83a27f57387b05019b5ea38c9443637d 100 Pfam PF13744 Helix-turn-helix domain 14 89 1.6E-12 T 13-10-2018 IPR039554 HigA2-like, helix-turn-helix domain CDG55_00825 83a27f57387b05019b5ea38c9443637d 100 Gene3D G3DSA:1.10.260.40 15 89 1.8E-12 T 13-10-2018 CDG55_00825 83a27f57387b05019b5ea38c9443637d 100 SUPERFAMILY SSF47413 20 92 1.26E-16 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_00825 83a27f57387b05019b5ea38c9443637d 100 SMART SM00530 32 87 2.1E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_11590 53270e430c5bd728d6ac3be99f57df2d 485 Pfam PF00324 Amino acid permease 18 472 5.9E-136 T 13-10-2018 IPR004841 Amino acid permease/ SLC12A domain GO:0016020|GO:0055085 CDG55_11590 53270e430c5bd728d6ac3be99f57df2d 485 PIRSF PIRSF006060 1 485 3.0E-82 T 13-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 CDG55_11590 53270e430c5bd728d6ac3be99f57df2d 485 Gene3D G3DSA:1.20.1740.10 9 482 3.5E-63 T 13-10-2018 CDG55_07530 488253cfb710e0aecfcc04df43a2ab3e 72 Pfam PF07866 Protein of unknown function (DUF1653) 6 67 7.2E-29 T 13-10-2018 IPR023387 DUF1653-like domain CDG55_07530 488253cfb710e0aecfcc04df43a2ab3e 72 Gene3D G3DSA:2.30.30.320 1 72 3.1E-29 T 13-10-2018 IPR037135 DUF1653-like domain superfamily CDG55_07455 00e95771d90b0152e376f57152e66c2a 140 Gene3D G3DSA:3.30.300.20 39 139 2.2E-28 T 13-10-2018 IPR015946 K homology domain-like, alpha/beta CDG55_07455 00e95771d90b0152e376f57152e66c2a 140 SUPERFAMILY SSF82784 1 138 1.57E-39 T 13-10-2018 IPR036102 OsmC/Ohr superfamily CDG55_07455 00e95771d90b0152e376f57152e66c2a 140 Gene3D G3DSA:2.20.25.10 1 32 5.0E-8 T 13-10-2018 CDG55_07455 00e95771d90b0152e376f57152e66c2a 140 Pfam PF02566 OsmC-like protein 33 132 1.6E-19 T 13-10-2018 IPR003718 OsmC/Ohr family CDG55_05470 75e3debdc3c74c0ab7f3cdb0f2356463 205 Gene3D G3DSA:1.20.1540.10 4 193 2.0E-27 T 13-10-2018 IPR035952 Rhomboid-like superfamily CDG55_05470 75e3debdc3c74c0ab7f3cdb0f2356463 205 SUPERFAMILY SSF144091 9 190 1.83E-35 T 13-10-2018 CDG55_05470 75e3debdc3c74c0ab7f3cdb0f2356463 205 Pfam PF01694 Rhomboid family 40 189 3.0E-25 T 13-10-2018 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 CDG55_08005 15fd1a22e7700857362ce6878604567e 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 5.3E-28 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_08005 15fd1a22e7700857362ce6878604567e 70 SMART SM00357 6 69 7.9E-28 T 13-10-2018 IPR011129 Cold shock domain GO:0003676 CDG55_08005 15fd1a22e7700857362ce6878604567e 70 PRINTS PR00050 Cold shock protein signature 7 22 4.1E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_08005 15fd1a22e7700857362ce6878604567e 70 PRINTS PR00050 Cold shock protein signature 27 36 4.1E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_08005 15fd1a22e7700857362ce6878604567e 70 PRINTS PR00050 Cold shock protein signature 42 60 4.1E-18 T 13-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 CDG55_08005 15fd1a22e7700857362ce6878604567e 70 Gene3D G3DSA:2.40.50.140 1 70 2.1E-27 T 13-10-2018 CDG55_08005 15fd1a22e7700857362ce6878604567e 70 PIRSF PIRSF002599 1 70 2.6E-22 T 13-10-2018 IPR012156 Cold shock, CspA GO:0003676 CDG55_08005 15fd1a22e7700857362ce6878604567e 70 SUPERFAMILY SSF50249 2 69 8.78E-25 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_14425 c2dce133b48fb4f74dc0419bc8b71d5c 102 PIRSF PIRSF003113 1 98 6.0E-31 T 13-10-2018 IPR002634 BolA protein CDG55_14425 c2dce133b48fb4f74dc0419bc8b71d5c 102 Pfam PF01722 BolA-like protein 12 85 1.9E-23 T 13-10-2018 IPR002634 BolA protein CDG55_14425 c2dce133b48fb4f74dc0419bc8b71d5c 102 SUPERFAMILY SSF82657 4 88 1.11E-24 T 13-10-2018 IPR036065 BolA-like superfamily CDG55_14425 c2dce133b48fb4f74dc0419bc8b71d5c 102 Gene3D G3DSA:3.30.300.90 2 90 2.9E-24 T 13-10-2018 CDG55_03390 7b14da128606f72beb2c56fac5f6bb2f 207 Gene3D G3DSA:3.90.950.10 8 207 8.6E-69 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CDG55_03390 7b14da128606f72beb2c56fac5f6bb2f 207 Pfam PF01725 Ham1 family 12 203 1.2E-52 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 CDG55_03390 7b14da128606f72beb2c56fac5f6bb2f 207 Hamap MF_01405 dITP/XTP pyrophosphatase. 10 204 46.458 T 13-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 CDG55_03390 7b14da128606f72beb2c56fac5f6bb2f 207 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 12 206 3.1E-53 T 13-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 CDG55_03390 7b14da128606f72beb2c56fac5f6bb2f 207 SUPERFAMILY SSF52972 8 206 8.9E-65 T 13-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like CDG55_11950 560cbd339acad51b50f51a8e39fdac40 195 SUPERFAMILY SSF53041 1 146 3.92E-27 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 CDG55_11950 560cbd339acad51b50f51a8e39fdac40 195 SMART SM00857 3 150 5.3E-32 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDG55_11950 560cbd339acad51b50f51a8e39fdac40 195 Gene3D G3DSA:3.40.50.1390 3 135 1.6E-28 T 13-10-2018 CDG55_11950 560cbd339acad51b50f51a8e39fdac40 195 Pfam PF00239 Resolvase, N terminal domain 5 146 4.0E-26 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDG55_11950 560cbd339acad51b50f51a8e39fdac40 195 Pfam PF02796 Helix-turn-helix domain of resolvase 155 192 5.4E-7 T 13-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 CDG55_10385 c9cce5ea7eb96e637205d976f6ca2475 297 SUPERFAMILY SSF103481 190 288 2.09E-12 T 13-10-2018 CDG55_10385 c9cce5ea7eb96e637205d976f6ca2475 297 SUPERFAMILY SSF103481 40 142 1.31E-10 T 13-10-2018 CDG55_10385 c9cce5ea7eb96e637205d976f6ca2475 297 Pfam PF00892 EamA-like transporter family 13 137 1.5E-9 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_10385 c9cce5ea7eb96e637205d976f6ca2475 297 Pfam PF00892 EamA-like transporter family 149 285 9.8E-17 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_04630 6d77a7af077c38fcfadf06c6e10f9f8c 431 Gene3D G3DSA:3.90.1150.10 8 411 3.5E-166 T 13-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 CDG55_04630 6d77a7af077c38fcfadf06c6e10f9f8c 431 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 422 49.239 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 CDG55_04630 6d77a7af077c38fcfadf06c6e10f9f8c 431 Pfam PF00202 Aminotransferase class-III 24 418 6.1E-131 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_04630 6d77a7af077c38fcfadf06c6e10f9f8c 431 Gene3D G3DSA:3.40.640.10 58 328 3.5E-166 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_04630 6d77a7af077c38fcfadf06c6e10f9f8c 431 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 10 419 3.9E-182 T 13-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 CDG55_04630 6d77a7af077c38fcfadf06c6e10f9f8c 431 SUPERFAMILY SSF53383 4 421 8.82E-134 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_04630 6d77a7af077c38fcfadf06c6e10f9f8c 431 PIRSF PIRSF000521 23 150 2.5E-8 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_04630 6d77a7af077c38fcfadf06c6e10f9f8c 431 PIRSF PIRSF000521 176 422 2.4E-24 T 13-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 CDG55_00235 586fb9fe0f0dc45e8d981c0655a0806d 300 PIRSF PIRSF015558 10 300 4.4E-100 T 13-10-2018 IPR016634 WYL domain protein, s026 type CDG55_00235 586fb9fe0f0dc45e8d981c0655a0806d 300 Pfam PF13280 WYL domain 135 205 3.4E-8 T 13-10-2018 IPR026881 WYL domain CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 PRINTS PR00601 Bacterioferritin signature 3 22 8.5E-41 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 PRINTS PR00601 Bacterioferritin signature 106 126 8.5E-41 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 PRINTS PR00601 Bacterioferritin signature 85 105 8.5E-41 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 PRINTS PR00601 Bacterioferritin signature 44 64 8.5E-41 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 PRINTS PR00601 Bacterioferritin signature 128 149 8.5E-41 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 PRINTS PR00601 Bacterioferritin signature 23 43 8.5E-41 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 1.0E-44 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 PIRSF PIRSF002560 1 154 2.4E-58 T 13-10-2018 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 Pfam PF00210 Ferritin-like domain 8 143 4.1E-34 T 13-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 SUPERFAMILY SSF47240 1 154 2.08E-45 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_04615 2c5981b8abb8795a7827326daf06121d 154 Gene3D G3DSA:1.20.1260.10 1 154 9.1E-59 T 13-10-2018 IPR012347 Ferritin-like CDG55_14400 74fc15841e33be1dae4e0c75b8cc7b28 212 Pfam PF09335 SNARE associated Golgi protein 45 170 5.9E-24 T 13-10-2018 IPR032816 SNARE associated Golgi protein CDG55_08315 a34e766805637fa92af295c90287d1c2 381 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 364 9.7E-104 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CDG55_08315 a34e766805637fa92af295c90287d1c2 381 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 381 1.8E-149 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CDG55_08315 a34e766805637fa92af295c90287d1c2 381 PIRSF PIRSF000267 2 380 1.4E-120 T 13-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 CDG55_11245 3d943589a258cfa560c9b544df912f78 486 Gene3D G3DSA:3.40.309.10 227 429 2.6E-149 T 13-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 CDG55_11245 3d943589a258cfa560c9b544df912f78 486 Gene3D G3DSA:3.40.605.10 25 449 2.6E-149 T 13-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 CDG55_11245 3d943589a258cfa560c9b544df912f78 486 SUPERFAMILY SSF53720 13 473 1.18E-108 T 13-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 CDG55_11245 3d943589a258cfa560c9b544df912f78 486 Pfam PF00171 Aldehyde dehydrogenase family 8 449 4.0E-79 T 13-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 CDG55_11245 3d943589a258cfa560c9b544df912f78 486 PIRSF PIRSF036492 4 484 2.5E-161 T 13-10-2018 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0006081|GO:0055114 CDG55_14850 67b74ece225243badb8fbda827133b78 382 Pfam PF00487 Fatty acid desaturase 74 341 3.1E-29 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 CDG55_14165 6a1611b5ab1d894be39069db0d512cb6 231 SUPERFAMILY SSF81324 110 217 3.01E-10 T 13-10-2018 CDG55_14165 6a1611b5ab1d894be39069db0d512cb6 231 Gene3D G3DSA:1.10.287.70 113 218 1.5E-9 T 13-10-2018 CDG55_14165 6a1611b5ab1d894be39069db0d512cb6 231 Pfam PF07885 Ion channel 134 215 7.2E-6 T 13-10-2018 IPR013099 Potassium channel domain CDG55_13980 c1498670431ca4ff3ef235976e05193c 75 Pfam PF04380 Membrane fusogenic activity 4 69 1.9E-11 T 13-10-2018 IPR007475 Membrane fusogenic activity CDG55_14480 e7e6b9beea9bef2631c776001efc2c46 368 Pfam PF09614 CRISPR-associated protein (Cas_Csy2) 10 333 8.4E-79 T 13-10-2018 IPR013398 CRISPR-associated protein Csy2 CDG55_14480 e7e6b9beea9bef2631c776001efc2c46 368 TIGRFAM TIGR02565 cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2 12 333 2.0E-64 T 13-10-2018 IPR013398 CRISPR-associated protein Csy2 CDG55_10495 d437dd64fa32f0c32684adfb50107bd3 320 SUPERFAMILY SSF54427 206 319 6.13E-7 T 13-10-2018 IPR032710 NTF2-like domain superfamily CDG55_10495 d437dd64fa32f0c32684adfb50107bd3 320 Pfam PF04280 Tim44-like domain 200 319 6.0E-11 T 13-10-2018 IPR007379 Tim44-like domain CDG55_10495 d437dd64fa32f0c32684adfb50107bd3 320 SMART SM00978 189 319 5.8E-30 T 13-10-2018 IPR007379 Tim44-like domain CDG55_10555 5452138c1af8b5c389ca6c4402ba44bc 447 TIGRFAM TIGR00937 2A51: chromate efflux transporter 23 440 1.0E-72 T 13-10-2018 IPR014047 Chromate transporter, long chain CDG55_10555 5452138c1af8b5c389ca6c4402ba44bc 447 PIRSF PIRSF004810 1 447 5.4E-127 T 13-10-2018 IPR014047 Chromate transporter, long chain CDG55_10555 5452138c1af8b5c389ca6c4402ba44bc 447 Pfam PF02417 Chromate transporter 256 440 3.0E-32 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 CDG55_10555 5452138c1af8b5c389ca6c4402ba44bc 447 Pfam PF02417 Chromate transporter 16 180 3.5E-37 T 13-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 CDG55_10665 1d434220f2e00bb9a1250aa33d88fcd9 355 Gene3D G3DSA:3.20.20.140 5 355 6.1E-70 T 13-10-2018 CDG55_10665 1d434220f2e00bb9a1250aa33d88fcd9 355 Pfam PF04909 Amidohydrolase 9 353 1.2E-20 T 13-10-2018 IPR006680 Amidohydrolase-related GO:0016787 CDG55_10665 1d434220f2e00bb9a1250aa33d88fcd9 355 SUPERFAMILY SSF51556 7 354 1.28E-31 T 13-10-2018 IPR032466 Metal-dependent hydrolase CDG55_06370 d8f9f2a547e009d645173df4c40697fb 106 SUPERFAMILY SSF46689 14 102 1.34E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_06815 e35a36776a04c1b05b40291070266b8e 260 Pfam PF07103 Protein of unknown function (DUF1365) 9 256 1.2E-53 T 13-10-2018 IPR010775 Protein of unknown function DUF1365 CDG55_03610 e24eb42f789fce9932971257bfe2bdce 104 Gene3D G3DSA:3.40.250.10 11 104 1.0E-16 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_03610 e24eb42f789fce9932971257bfe2bdce 104 Pfam PF00581 Rhodanese-like domain 17 90 1.8E-7 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_03610 e24eb42f789fce9932971257bfe2bdce 104 SUPERFAMILY SSF52821 15 103 9.95E-17 T 13-10-2018 IPR036873 Rhodanese-like domain superfamily CDG55_03610 e24eb42f789fce9932971257bfe2bdce 104 SMART SM00450 2 99 9.2E-9 T 13-10-2018 IPR001763 Rhodanese-like domain CDG55_04490 05edf72e695ac3beff14734916d3889d 177 SUPERFAMILY SSF55729 3 175 1.53E-42 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_04490 05edf72e695ac3beff14734916d3889d 177 Gene3D G3DSA:3.40.630.30 2 160 9.4E-45 T 13-10-2018 CDG55_04490 05edf72e695ac3beff14734916d3889d 177 Pfam PF13302 Acetyltransferase (GNAT) domain 10 150 5.9E-34 T 13-10-2018 IPR000182 GNAT domain CDG55_03480 6601a64168817eb84fc251432a54a343 280 Pfam PF04072 Leucine carboxyl methyltransferase 58 182 7.2E-9 T 13-10-2018 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 CDG55_03480 6601a64168817eb84fc251432a54a343 280 SUPERFAMILY SSF53335 55 259 2.8E-30 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_03480 6601a64168817eb84fc251432a54a343 280 Gene3D G3DSA:3.40.50.150 30 273 9.8E-21 T 13-10-2018 CDG55_03425 814f31e1da6e32adfc404b1cf3ff8ba1 752 Gene3D G3DSA:2.170.130.10 47 174 2.7E-35 T 13-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily CDG55_03425 814f31e1da6e32adfc404b1cf3ff8ba1 752 Pfam PF00593 TonB dependent receptor 257 751 2.7E-52 T 13-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel CDG55_03425 814f31e1da6e32adfc404b1cf3ff8ba1 752 Gene3D G3DSA:2.40.170.20 178 752 3.6E-132 T 13-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily CDG55_03425 814f31e1da6e32adfc404b1cf3ff8ba1 752 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 751 3.0E-78 T 13-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 CDG55_03425 814f31e1da6e32adfc404b1cf3ff8ba1 752 Pfam PF07715 TonB-dependent Receptor Plug Domain 64 162 1.4E-17 T 13-10-2018 IPR012910 TonB-dependent receptor, plug domain CDG55_03425 814f31e1da6e32adfc404b1cf3ff8ba1 752 SUPERFAMILY SSF56935 36 752 6.02E-121 T 13-10-2018 CDG55_10925 22eb2556ad59d17e71afd85823f08ca0 221 Gene3D G3DSA:1.20.58.1690 139 211 5.6E-17 T 13-10-2018 IPR038434 YARHG domain superfamily CDG55_10925 22eb2556ad59d17e71afd85823f08ca0 221 Pfam PF13308 YARHG domain 136 211 4.6E-17 T 13-10-2018 IPR025582 YARHG domain CDG55_10925 22eb2556ad59d17e71afd85823f08ca0 221 SMART SM01324 131 212 5.4E-9 T 13-10-2018 IPR025582 YARHG domain CDG55_11030 569ce648810638192f4fe7795809d2c6 232 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 11 232 4.1E-23 T 13-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 CDG55_11030 569ce648810638192f4fe7795809d2c6 232 Gene3D G3DSA:2.50.20.10 35 232 2.3E-52 T 13-10-2018 CDG55_11030 569ce648810638192f4fe7795809d2c6 232 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 69 222 9.4E-40 T 13-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like CDG55_11030 569ce648810638192f4fe7795809d2c6 232 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 20 232 28.482 T 13-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 CDG55_11030 569ce648810638192f4fe7795809d2c6 232 SUPERFAMILY SSF89392 39 232 1.06E-45 T 13-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX CDG55_13635 a031bef89a835dd004fc1924b52897e8 473 PRINTS PR00173 Glutamate-aspartate symporter signature 406 425 2.0E-5 T 13-10-2018 CDG55_13635 a031bef89a835dd004fc1924b52897e8 473 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 2.0E-5 T 13-10-2018 CDG55_13635 a031bef89a835dd004fc1924b52897e8 473 Pfam PF03553 Na+/H+ antiporter family 150 467 1.9E-65 T 13-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 CDG55_13635 a031bef89a835dd004fc1924b52897e8 473 Pfam PF13726 Na+-H+ antiporter family 2 88 6.2E-33 T 13-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal CDG55_02775 74eeebd99c5cf4330d2aec64d6e3b65c 289 SUPERFAMILY SSF103481 179 277 4.58E-11 T 13-10-2018 CDG55_02775 74eeebd99c5cf4330d2aec64d6e3b65c 289 SUPERFAMILY SSF103481 42 131 8.76E-5 T 13-10-2018 CDG55_02775 74eeebd99c5cf4330d2aec64d6e3b65c 289 Pfam PF00892 EamA-like transporter family 143 273 1.2E-14 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_02775 74eeebd99c5cf4330d2aec64d6e3b65c 289 Pfam PF00892 EamA-like transporter family 8 129 1.5E-6 T 13-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 CDG55_03335 370eb7016ddd5d0f1aad22418e803441 432 SUPERFAMILY SSF55961 82 203 3.3E-9 T 13-10-2018 CDG55_03335 370eb7016ddd5d0f1aad22418e803441 432 Gene3D G3DSA:3.30.530.20 80 211 2.1E-6 T 13-10-2018 IPR023393 START-like domain superfamily CDG55_14355 115289d9be31f472dc736686751d7b0d 101 Gene3D G3DSA:1.10.225.20 1 95 3.5E-32 T 13-10-2018 CDG55_14355 115289d9be31f472dc736686751d7b0d 101 Pfam PF12977 Domain of Unknown Function with PDB structure (DUF3861) 4 94 3.1E-35 T 13-10-2018 IPR024476 Protein of unknown function DUF3861 CDG55_11910 7eec6afa1fae8d8c23390d5d33eb6eab 396 Pfam PF01697 Glycosyltransferase family 92 144 344 6.0E-8 T 13-10-2018 IPR008166 Glycosyltransferase family 92 CDG55_10725 ab7b8b0660725b4b03114f3313acf9ab 127 SUPERFAMILY SSF55718 4 108 5.18E-12 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily CDG55_10725 ab7b8b0660725b4b03114f3313acf9ab 127 Pfam PF02036 SCP-2 sterol transfer family 34 108 2.7E-7 T 13-10-2018 IPR003033 SCP2 sterol-binding domain CDG55_10725 ab7b8b0660725b4b03114f3313acf9ab 127 Gene3D G3DSA:3.30.1050.10 7 111 1.4E-12 T 13-10-2018 IPR036527 SCP2 sterol-binding domain superfamily CDG55_09165 b8bdab8250e2339c11f38bb8ec392731 386 Gene3D G3DSA:1.10.10.2510 214 385 2.5E-12 T 13-10-2018 CDG55_09165 b8bdab8250e2339c11f38bb8ec392731 386 SUPERFAMILY SSF51197 7 296 9.89E-62 T 13-10-2018 CDG55_09165 b8bdab8250e2339c11f38bb8ec392731 386 SMART SM00558 81 228 1.2E-9 T 13-10-2018 IPR003347 JmjC domain CDG55_09165 b8bdab8250e2339c11f38bb8ec392731 386 Pfam PF08007 Cupin superfamily protein 14 312 1.9E-87 T 13-10-2018 IPR003347 JmjC domain CDG55_09165 b8bdab8250e2339c11f38bb8ec392731 386 Gene3D G3DSA:2.60.120.650 1 213 1.5E-74 T 13-10-2018 CDG55_02425 a9a7efdd0cf7cc88dafb0b19c7233e18 112 Pfam PF04999 Cell division protein FtsL 18 103 4.6E-26 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 CDG55_02425 a9a7efdd0cf7cc88dafb0b19c7233e18 112 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 21 102 9.8E-12 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 CDG55_02425 a9a7efdd0cf7cc88dafb0b19c7233e18 112 Hamap MF_00910 Cell division protein FtsL [ftsL]. 19 102 13.43 T 13-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 CDG55_06950 4722790a2c3f09e496f88f992f71f223 228 Pfam PF01738 Dienelactone hydrolase family 16 221 5.0E-18 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 CDG55_06950 4722790a2c3f09e496f88f992f71f223 228 Gene3D G3DSA:3.40.50.1820 3 223 1.2E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_06950 4722790a2c3f09e496f88f992f71f223 228 SUPERFAMILY SSF53474 3 223 1.46E-23 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_05915 3ad16f384da62080330b7d4e2b1751fd 236 Pfam PF04972 BON domain 62 113 1.5E-10 T 13-10-2018 IPR007055 BON domain CDG55_00240 c5b2c9882ee0a6ce4257aa30db54db6b 397 SUPERFAMILY SSF56281 2 278 1.94E-9 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_04505 4da54578dc87e43ad7adfda0fca50440 190 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 23 174 4.1E-30 T 13-10-2018 IPR018639 Domain of unknown function DUF2062 CDG55_09665 abefc15259add51ef3949c0b5acf2516 278 Pfam PF03618 Kinase/pyrophosphorylase 11 268 4.3E-76 T 13-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 CDG55_09665 abefc15259add51ef3949c0b5acf2516 278 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 8 277 75.068 T 13-10-2018 IPR026530 Phosphoenolpyruvate synthase regulatory protein CDG55_04455 bbadeb578022616469f896de4dfe7464 233 Pfam PF03400 IS1 transposase 104 220 6.6E-25 T 13-10-2018 IPR005063 Transposase, IS1 GO:0003677|GO:0004803|GO:0006313 CDG55_00385 e51dd566a57c1c93cd94280dddd3c012 93 SUPERFAMILY SSF47413 33 91 2.82E-10 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_00385 e51dd566a57c1c93cd94280dddd3c012 93 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 4 92 2.0E-37 T 13-10-2018 IPR014057 Uncharacterized protein HI1420 CDG55_00385 e51dd566a57c1c93cd94280dddd3c012 93 Pfam PF01381 Helix-turn-helix 47 91 2.3E-6 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_08500 7c14cf3312780b8972bb45e2f926ea4c 123 Hamap MF_00599 Cell division protein FtsB [ftsB]. 11 99 28.004 T 13-10-2018 IPR023081 Cell division protein FtsB CDG55_08500 7c14cf3312780b8972bb45e2f926ea4c 123 Pfam PF04977 Septum formation initiator 20 97 6.3E-23 T 13-10-2018 IPR007060 Septum formation initiator FtsL/DivIC CDG55_04695 373871dfe8bccd1d1c92682891118f98 199 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 24 187 3.2E-34 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CDG55_04695 373871dfe8bccd1d1c92682891118f98 199 SUPERFAMILY SSF46785 98 173 2.26E-22 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_04695 373871dfe8bccd1d1c92682891118f98 199 Gene3D G3DSA:1.10.10.10 15 95 1.3E-14 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_04695 373871dfe8bccd1d1c92682891118f98 199 SUPERFAMILY SSF46785 19 95 3.4E-14 T 13-10-2018 IPR036390 Winged helix DNA-binding domain superfamily CDG55_04695 373871dfe8bccd1d1c92682891118f98 199 PIRSF PIRSF019345 8 199 7.5E-54 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CDG55_04695 373871dfe8bccd1d1c92682891118f98 199 Pfam PF04079 Segregation and condensation complex subunit ScpB 24 182 2.8E-48 T 13-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 CDG55_04695 373871dfe8bccd1d1c92682891118f98 199 Gene3D G3DSA:1.10.10.10 96 191 1.7E-29 T 13-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily CDG55_13925 1b4f641e0fa32101a9a59bf3472f6ffa 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 347 3.5E-92 T 13-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 CDG55_13925 1b4f641e0fa32101a9a59bf3472f6ffa 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 349 7.5E-74 T 13-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 CDG55_10190 4e067a1993a4a1d2d44f5099e2699e5a 170 Pfam PF00578 AhpC/TSA family 8 129 9.7E-27 T 13-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_10190 4e067a1993a4a1d2d44f5099e2699e5a 170 SUPERFAMILY SSF52833 7 151 6.54E-40 T 13-10-2018 IPR036249 Thioredoxin-like superfamily CDG55_10190 4e067a1993a4a1d2d44f5099e2699e5a 170 PIRSF PIRSF000239 4 169 8.0E-25 T 13-10-2018 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 CDG55_10190 4e067a1993a4a1d2d44f5099e2699e5a 170 Gene3D G3DSA:3.40.30.10 3 151 1.9E-36 T 13-10-2018 CDG55_08680 bc26c57c1d9fb72a604751a761f04d23 361 Gene3D G3DSA:3.40.50.1820 40 357 7.3E-19 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_08680 bc26c57c1d9fb72a604751a761f04d23 361 SUPERFAMILY SSF53474 45 352 2.07E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_08680 bc26c57c1d9fb72a604751a761f04d23 361 Pfam PF00561 alpha/beta hydrolase fold 72 166 7.0E-9 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_01610 eb0c1f4532ca9f0bc3dcd661f7002c89 435 Pfam PF04286 Protein of unknown function (DUF445) 54 430 1.8E-74 T 13-10-2018 IPR007383 Protein of unknown function DUF445 CDG55_11900 b72bab398eb0e56098a286b0ccfbf802 284 Pfam PF05212 Protein of unknown function (DUF707) 129 208 1.4E-7 T 13-10-2018 IPR007877 Protein of unknown function DUF707 CDG55_05505 97ea66af1ba82b3fdf499a78e7b65541 234 Gene3D G3DSA:3.40.50.300 4 233 5.4E-63 T 13-10-2018 CDG55_05505 97ea66af1ba82b3fdf499a78e7b65541 234 Pfam PF00005 ABC transporter 25 174 3.6E-33 T 13-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 CDG55_05505 97ea66af1ba82b3fdf499a78e7b65541 234 SMART SM00382 34 221 7.6E-12 T 13-10-2018 IPR003593 AAA+ ATPase domain CDG55_05505 97ea66af1ba82b3fdf499a78e7b65541 234 SUPERFAMILY SSF52540 5 230 2.9E-66 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_01475 9f021c8c718587d929431d6b4b0ed16b 212 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 27 201 3.2E-36 T 13-10-2018 IPR003740 Uncharacterised membrane protein YitT CDG55_14890 f486e4421626007fe3417aab829806c2 127 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 69 122 4.0E-19 T 13-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB CDG55_14890 f486e4421626007fe3417aab829806c2 127 Gene3D G3DSA:3.10.450.160 60 126 5.6E-12 T 13-10-2018 CDG55_14890 f486e4421626007fe3417aab829806c2 127 Pfam PF11776 Nickel/cobalt transporter regulator 74 122 8.0E-16 T 13-10-2018 IPR024572 Nickel/cobalt homeostasis protein RcnB CDG55_05105 03b4891ba180eb252218bc6bff36d991 305 SUPERFAMILY SSF69593 75 296 4.71E-26 T 13-10-2018 CDG55_05105 03b4891ba180eb252218bc6bff36d991 305 Pfam PF01553 Acyltransferase 91 235 1.8E-10 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_05105 03b4891ba180eb252218bc6bff36d991 305 SMART SM00563 94 236 1.4E-6 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_08935 bc3e2ef660d913816a827ed2b1c1b626 275 Pfam PF01148 Cytidylyltransferase family 3 264 6.1E-60 T 13-10-2018 CDG55_00395 2f16280f9964d435383cc4fccf3bfee8 341 Gene3D G3DSA:3.30.420.10 172 333 1.6E-10 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_00395 2f16280f9964d435383cc4fccf3bfee8 341 Pfam PF13936 Helix-turn-helix domain 7 51 2.4E-12 T 13-10-2018 IPR025246 Transposase IS30-like HTH domain CDG55_00395 2f16280f9964d435383cc4fccf3bfee8 341 Pfam PF00665 Integrase core domain 180 285 2.7E-15 T 13-10-2018 IPR001584 Integrase, catalytic core GO:0015074 CDG55_00395 2f16280f9964d435383cc4fccf3bfee8 341 SUPERFAMILY SSF53098 180 326 1.52E-27 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_09445 307f9576fca35d50ded077e9f6719cd7 206 Pfam PF01810 LysE type translocator 16 202 3.1E-23 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_04005 9d6cc8473627ef38203bd6253e29db9a 117 Pfam PF16309 Domian of unknown function (DUF4951) 35 117 5.5E-47 T 13-10-2018 IPR032538 Protein of unknown function DUF4951 CDG55_04005 9d6cc8473627ef38203bd6253e29db9a 117 Gene3D G3DSA:1.20.1280.230 14 117 2.7E-36 T 13-10-2018 CDG55_08270 e7d64d621588200d82a2b2f0f3bbc47a 77 SUPERFAMILY SSF81901 18 73 3.27E-8 T 13-10-2018 CDG55_08270 e7d64d621588200d82a2b2f0f3bbc47a 77 Gene3D G3DSA:1.25.40.10 5 77 1.7E-8 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_08385 844b3f3bc1c8b5592b61ceb2a3af5a78 445 Pfam PF02386 Cation transport protein 40 427 3.4E-54 T 13-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 CDG55_08385 844b3f3bc1c8b5592b61ceb2a3af5a78 445 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 33 417 1.8E-101 T 13-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 CDG55_04650 7a74978977f1395ed30ba441d99ec71f 165 SUPERFAMILY SSF160631 23 163 6.28E-7 T 13-10-2018 CDG55_00935 2c7eff78f4d7c6686069dafac4fbfb99 112 PRINTS PR00355 Adrenodoxin signature 42 52 5.8E-8 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDG55_00935 2c7eff78f4d7c6686069dafac4fbfb99 112 PRINTS PR00355 Adrenodoxin signature 60 74 5.8E-8 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDG55_00935 2c7eff78f4d7c6686069dafac4fbfb99 112 PRINTS PR00355 Adrenodoxin signature 83 91 5.8E-8 T 13-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 CDG55_00935 2c7eff78f4d7c6686069dafac4fbfb99 112 Gene3D G3DSA:3.10.20.30 1 112 6.6E-34 T 13-10-2018 IPR012675 Beta-grasp domain superfamily CDG55_00935 2c7eff78f4d7c6686069dafac4fbfb99 112 SUPERFAMILY SSF54292 4 106 2.69E-27 T 13-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 CDG55_00935 2c7eff78f4d7c6686069dafac4fbfb99 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 9.8E-49 T 13-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 CDG55_00935 2c7eff78f4d7c6686069dafac4fbfb99 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 92 2.0E-10 T 13-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 CDG55_05135 4dfaa960cd6e354fef3909522b02ab96 258 Gene3D G3DSA:3.40.630.30 30 193 7.5E-17 T 13-10-2018 CDG55_05135 4dfaa960cd6e354fef3909522b02ab96 258 SUPERFAMILY SSF55729 24 229 6.43E-27 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_05135 4dfaa960cd6e354fef3909522b02ab96 258 Pfam PF13444 Acetyltransferase (GNAT) domain 46 138 4.9E-16 T 13-10-2018 CDG55_14225 5ccbc5dc02bf308ac648d8a10c287eb9 189 Gene3D G3DSA:3.90.870.10 1 188 4.8E-49 T 13-10-2018 CDG55_14225 5ccbc5dc02bf308ac648d8a10c287eb9 189 Pfam PF01300 Telomere recombination 12 186 3.4E-29 T 13-10-2018 IPR006070 YrdC-like domain GO:0003725 CDG55_14225 5ccbc5dc02bf308ac648d8a10c287eb9 189 SUPERFAMILY SSF55821 5 188 8.55E-40 T 13-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CDG55_14225 5ccbc5dc02bf308ac648d8a10c287eb9 189 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 3 188 34.202 T 13-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 CDG55_12670 3f06b02a68ab4d424760dcae27f22ca9 382 Pfam PF00561 alpha/beta hydrolase fold 82 359 1.1E-18 T 13-10-2018 IPR000073 Alpha/beta hydrolase fold-1 CDG55_12670 3f06b02a68ab4d424760dcae27f22ca9 382 SUPERFAMILY SSF53474 64 377 4.85E-33 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_12670 3f06b02a68ab4d424760dcae27f22ca9 382 Gene3D G3DSA:3.40.50.1820 61 378 1.0E-25 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_00700 210ff3740bc5ddf0c740b1a8ea84598c 248 Pfam PF01609 Transposase DDE domain 87 243 3.1E-21 T 13-10-2018 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 CDG55_00700 210ff3740bc5ddf0c740b1a8ea84598c 248 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 6 76 2.8E-20 T 13-10-2018 IPR025161 Putative transposase IS4/IS5 family CDG55_04365 1eb50a9e5f0161153230e57c122510d1 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 96 1.2E-22 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like CDG55_04365 1eb50a9e5f0161153230e57c122510d1 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 18.225 T 13-10-2018 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 CDG55_14000 edaa7a8237fe7f52947d567b0ec5f9f5 441 Gene3D G3DSA:2.40.160.10 12 441 1.3E-126 T 13-10-2018 IPR023614 Porin domain superfamily CDG55_14000 edaa7a8237fe7f52947d567b0ec5f9f5 441 Pfam PF03573 outer membrane porin, OprD family 30 439 2.9E-102 T 13-10-2018 IPR005318 Outer membrane porin, bacterial GO:0016021 CDG55_11375 fa03973776cff1bf267744b83eaa0973 448 Gene3D G3DSA:2.40.160.20 218 368 4.5E-6 T 13-10-2018 CDG55_11375 fa03973776cff1bf267744b83eaa0973 448 SUPERFAMILY SSF56935 100 448 7.85E-26 T 13-10-2018 CDG55_00340 107713679046a83fbda41bc32df0fa39 378 Pfam PF13020 Domain of unknown function (DUF3883) 256 352 7.4E-21 T 13-10-2018 IPR024975 Domain of unknown function DUF3883 CDG55_12830 61cc3200d7f804d9c4789be8795e175e 369 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 118 312 1.4E-13 T 13-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase CDG55_12830 61cc3200d7f804d9c4789be8795e175e 369 SUPERFAMILY SSF56219 101 319 3.53E-31 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CDG55_12830 61cc3200d7f804d9c4789be8795e175e 369 Gene3D G3DSA:3.60.10.10 101 322 8.0E-19 T 13-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CDG55_09825 70ea2af09ee1e029a0ffd71b2bcd3a32 184 Pfam PF01292 Prokaryotic cytochrome b561 8 181 2.7E-24 T 13-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 CDG55_09825 70ea2af09ee1e029a0ffd71b2bcd3a32 184 SUPERFAMILY SSF81342 4 180 2.35E-32 T 13-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 CDG55_04360 504f03bfce369f747d291070b78fa47e 173 Gene3D G3DSA:1.20.120.1200 1 163 2.5E-45 T 13-10-2018 CDG55_04360 504f03bfce369f747d291070b78fa47e 173 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 161 9.3E-33 T 13-10-2018 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 CDG55_08690 4ac41b6f0490a49798ad0a44c7513fca 89 Pfam PF13308 YARHG domain 29 83 1.3E-5 T 13-10-2018 IPR025582 YARHG domain CDG55_08690 4ac41b6f0490a49798ad0a44c7513fca 89 SMART SM01324 11 84 6.6E-18 T 13-10-2018 IPR025582 YARHG domain CDG55_14485 90be66a6b647c0a298e4f23c6e38ece6 444 Pfam PF09611 CRISPR-associated protein (Cas_Csy1) 49 429 4.9E-98 T 13-10-2018 IPR013397 CRISPR-associated protein Csy1 CDG55_14485 90be66a6b647c0a298e4f23c6e38ece6 444 TIGRFAM TIGR02564 cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1 49 434 1.0E-87 T 13-10-2018 IPR013397 CRISPR-associated protein Csy1 CDG55_04865 8ccd8aab6388f137a0f96978961bff0f 94 Pfam PF11112 Pyocin activator protein PrtN 6 77 2.3E-16 T 13-10-2018 IPR020518 Transcription regulator PrtN GO:0006355 CDG55_00030 94772e3e350b6782f83f5c7f34958ab7 317 Pfam PF08708 Primase C terminal 1 (PriCT-1) 173 249 3.6E-13 T 13-10-2018 IPR014820 Primase, C-terminal 1 CDG55_00030 94772e3e350b6782f83f5c7f34958ab7 317 Pfam PF03090 Replicase family 30 160 5.1E-39 T 13-10-2018 IPR004322 Plasmid replicase, bacterial CDG55_00030 94772e3e350b6782f83f5c7f34958ab7 317 Gene3D G3DSA:1.10.10.60 272 313 1.3E-5 T 13-10-2018 CDG55_00030 94772e3e350b6782f83f5c7f34958ab7 317 Gene3D G3DSA:1.10.340.50 175 271 1.7E-29 T 13-10-2018 CDG55_00870 1ae06ce7c80ece1c63abe2d34a770263 1152 SUPERFAMILY SSF53335 76 651 2.49E-65 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_00870 1ae06ce7c80ece1c63abe2d34a770263 1152 Pfam PF07669 Eco57I restriction-modification methylase 481 574 1.4E-5 T 13-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 CDG55_00870 1ae06ce7c80ece1c63abe2d34a770263 1152 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 237 253 6.1E-9 T 13-10-2018 CDG55_00870 1ae06ce7c80ece1c63abe2d34a770263 1152 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 310 324 6.1E-9 T 13-10-2018 CDG55_00870 1ae06ce7c80ece1c63abe2d34a770263 1152 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 482 494 6.1E-9 T 13-10-2018 CDG55_12630 ab030450994d84b13002b0440ccbb721 399 Gene3D G3DSA:1.10.150.130 95 203 4.8E-20 T 13-10-2018 IPR010998 Integrase/recombinase, N-terminal CDG55_12630 ab030450994d84b13002b0440ccbb721 399 Pfam PF00589 Phage integrase family 206 351 2.9E-13 T 13-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 CDG55_12630 ab030450994d84b13002b0440ccbb721 399 SUPERFAMILY SSF56349 98 384 3.53E-46 T 13-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 CDG55_12630 ab030450994d84b13002b0440ccbb721 399 Gene3D G3DSA:3.30.160.390 1 90 3.5E-18 T 13-10-2018 IPR038488 Integrase, DNA-binding domain superfamily CDG55_12630 ab030450994d84b13002b0440ccbb721 399 Gene3D G3DSA:1.10.443.10 204 390 4.3E-14 T 13-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 CDG55_12630 ab030450994d84b13002b0440ccbb721 399 Pfam PF13356 Arm DNA-binding domain 3 88 8.7E-16 T 13-10-2018 IPR025166 Integrase, DNA-binding domain CDG55_00045 8f715432ec50345a2a76eb19573adc4f 237 Pfam PF13643 Domain of unknown function (DUF4145) 110 210 2.1E-16 T 13-10-2018 IPR025285 Domain of unknown function DUF4145 CDG55_04460 787b42280a0d7e282c4a76814c6063ce 540 Gene3D G3DSA:3.50.50.60 441 526 7.3E-26 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_04460 787b42280a0d7e282c4a76814c6063ce 540 Gene3D G3DSA:3.50.50.60 1 134 6.7E-33 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_04460 787b42280a0d7e282c4a76814c6063ce 540 Gene3D G3DSA:3.50.50.60 158 360 7.5E-39 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_04460 787b42280a0d7e282c4a76814c6063ce 540 Pfam PF06100 MCRA family 15 509 2.2E-185 T 13-10-2018 IPR010354 Oleate hydratase GO:0006631|GO:0050151|GO:0071949 CDG55_04460 787b42280a0d7e282c4a76814c6063ce 540 SUPERFAMILY SSF51905 16 251 1.89E-12 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_08590 627519080fd7900a1d2d3dfffb59c53b 266 Pfam PF01925 Sulfite exporter TauE/SafE 7 258 2.1E-50 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CDG55_07620 39991e289066666022029aa9a9028260 257 PIRSF PIRSF006648 2 254 1.4E-19 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CDG55_07620 39991e289066666022029aa9a9028260 257 Pfam PF01061 ABC-2 type transporter 9 219 3.7E-35 T 13-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 CDG55_07620 39991e289066666022029aa9a9028260 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 177 196 3.1E-5 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CDG55_07620 39991e289066666022029aa9a9028260 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 197 216 3.1E-5 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CDG55_07620 39991e289066666022029aa9a9028260 257 PRINTS PR00164 ABC-2 type transport system membrane protein signature 59 81 3.1E-5 T 13-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 CDG55_09575 7f4b6a27b46bfc44885938948212ed0c 61 Gene3D G3DSA:1.10.8.1210 29 60 7.0E-7 T 13-10-2018 CDG55_00875 db9d213a45a41e104c5007c6694b6acd 874 TIGRFAM TIGR02687 TIGR02687: TIGR02687 family protein 8 865 2.9E-264 T 13-10-2018 IPR014060 Conserved hypothetical protein CHP02687 CDG55_00875 db9d213a45a41e104c5007c6694b6acd 874 Pfam PF08665 PglZ domain 486 660 1.0E-55 T 13-10-2018 IPR013973 PglZ domain CDG55_11925 bc903ca09bec7fe52c7d03b1e10c00af 251 SUPERFAMILY SSF53448 14 250 6.19E-24 T 13-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases CDG55_03070 8bb48cd80d6c7c47d908e3ce2ad70081 314 Pfam PF10118 Predicted metal-dependent hydrolase 22 290 3.1E-65 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 CDG55_03070 8bb48cd80d6c7c47d908e3ce2ad70081 314 PIRSF PIRSF007580 7 310 6.9E-81 T 13-10-2018 IPR016516 Uncharacterised conserved protein UCP07580 CDG55_01855 d457240ef2db367bc084c7163123dd54 121 Pfam PF03692 Putative zinc- or iron-chelating domain 10 92 2.7E-8 T 13-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein CDG55_06010 d9912b235f902b6bdad39c68f05d47b6 138 Pfam PF11220 Protein of unknown function (DUF3015) 2 137 3.6E-40 T 13-10-2018 IPR021383 Protein of unknown function DUF3015 CDG55_14160 084b1a4e675c8641f8a0fb2364707fa9 658 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 16 496 8.4E-193 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 CDG55_14160 084b1a4e675c8641f8a0fb2364707fa9 658 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 54 498 1.3E-163 T 13-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 CDG55_09325 d4a62b54857a176040e4c4f766f48723 91 Gene3D G3DSA:1.20.58.1000 1 91 3.7E-30 T 13-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily CDG55_09325 d4a62b54857a176040e4c4f766f48723 91 Pfam PF02583 Metal-sensitive transcriptional repressor 7 87 1.2E-19 T 13-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 CDG55_04910 c572aa84a4925120e74db4e773752ec3 356 TIGRFAM TIGR03299 LGT_TIGR03299: phage/plasmid-like protein TIGR03299 6 352 3.9E-115 T 13-10-2018 IPR017686 Phage/plasmid-like protein CDG55_04910 c572aa84a4925120e74db4e773752ec3 356 Pfam PF06067 Domain of unknown function (DUF932) 77 336 5.7E-76 T 13-10-2018 IPR026325 Protein of unknown function DUF932 CDG55_01220 331b360b89ed8abfb34544aed5f03303 335 Gene3D G3DSA:3.40.190.170 58 221 3.0E-8 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily CDG55_11365 305237b4a14bceba135f0940527676ae 491 TIGRFAM TIGR00835 agcS: amino acid carrier protein 21 461 8.8E-153 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_11365 305237b4a14bceba135f0940527676ae 491 Pfam PF01235 Sodium:alanine symporter family 59 474 5.8E-157 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_11365 305237b4a14bceba135f0940527676ae 491 PRINTS PR00175 Sodium/alanine symporter signature 325 343 2.6E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_11365 305237b4a14bceba135f0940527676ae 491 PRINTS PR00175 Sodium/alanine symporter signature 430 450 2.6E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_11365 305237b4a14bceba135f0940527676ae 491 PRINTS PR00175 Sodium/alanine symporter signature 202 220 2.6E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_11365 305237b4a14bceba135f0940527676ae 491 PRINTS PR00175 Sodium/alanine symporter signature 96 118 2.6E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_11365 305237b4a14bceba135f0940527676ae 491 PRINTS PR00175 Sodium/alanine symporter signature 370 392 2.6E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_11365 305237b4a14bceba135f0940527676ae 491 PRINTS PR00175 Sodium/alanine symporter signature 230 249 2.6E-55 T 13-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 CDG55_02445 a05f901fcde7ae0e178a006a370132f1 372 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 372 1.1E-122 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_02445 a05f901fcde7ae0e178a006a370132f1 372 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 370 23.238 T 13-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 CDG55_02445 a05f901fcde7ae0e178a006a370132f1 372 Pfam PF00953 Glycosyl transferase family 4 99 296 1.1E-32 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 CDG55_09875 b71b34bbc109508b7d2da1172dfbc035 293 Pfam PF10670 Domain of unknown function (DUF4198) 19 267 1.7E-30 T 13-10-2018 IPR019613 Protein of unknown function DUF4198 CDG55_09240 c241e2b9c1fda1a5794498a7674c8742 211 Gene3D G3DSA:1.20.1260.10 45 189 2.4E-6 T 13-10-2018 IPR012347 Ferritin-like CDG55_09240 c241e2b9c1fda1a5794498a7674c8742 211 SUPERFAMILY SSF47240 48 182 1.69E-18 T 13-10-2018 IPR009078 Ferritin-like superfamily CDG55_09240 c241e2b9c1fda1a5794498a7674c8742 211 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 50 209 9.7E-43 T 13-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 CDG55_09240 c241e2b9c1fda1a5794498a7674c8742 211 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 11 211 29.465 T 13-10-2018 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 Reactome: R-HSA-2142789 CDG55_00300 f3bed7c76a416e81e1aa297902ee1152 73 SUPERFAMILY SSF143100 5 72 7.98E-7 T 13-10-2018 IPR035069 TTHA1013/TTHA0281-like CDG55_05690 0be0002e5adb95fe578903c8709fd2de 510 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 83 428 2.9E-61 T 13-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 CDG55_05690 0be0002e5adb95fe578903c8709fd2de 510 Gene3D G3DSA:3.40.640.10 113 372 7.1E-127 T 13-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 CDG55_05690 0be0002e5adb95fe578903c8709fd2de 510 SUPERFAMILY SSF53383 19 496 9.28E-116 T 13-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase CDG55_05690 0be0002e5adb95fe578903c8709fd2de 510 Gene3D G3DSA:3.90.1150.170 49 487 7.1E-127 T 13-10-2018 CDG55_06400 1832a58bdee42ef59a7e230cb70fee0f 195 SMART SM00563 29 147 4.9E-15 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_06400 1832a58bdee42ef59a7e230cb70fee0f 195 SUPERFAMILY SSF69593 24 146 5.23E-12 T 13-10-2018 CDG55_06400 1832a58bdee42ef59a7e230cb70fee0f 195 Pfam PF01553 Acyltransferase 27 139 9.5E-10 T 13-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 CDG55_08515 46a64ef85b72f9c9b2d04a6abbc71e2d 139 Pfam PF04143 Sulphur transport 54 126 3.9E-8 T 13-10-2018 IPR007272 Sulphur transport domain CDG55_08100 d52a5d321754b7f043d2a8e675a28cef 183 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 2.5E-7 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_08100 d52a5d321754b7f043d2a8e675a28cef 183 SUPERFAMILY SSF54523 11 96 1.33E-8 T 13-10-2018 CDG55_08100 d52a5d321754b7f043d2a8e675a28cef 183 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 6.5E-8 T 13-10-2018 IPR012902 Prokaryotic N-terminal methylation site CDG55_08100 d52a5d321754b7f043d2a8e675a28cef 183 PRINTS PR00885 Bacterial general secretion pathway protein H signature 6 20 6.6E-10 T 13-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 CDG55_08100 d52a5d321754b7f043d2a8e675a28cef 183 PRINTS PR00885 Bacterial general secretion pathway protein H signature 21 35 6.6E-10 T 13-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 CDG55_08100 d52a5d321754b7f043d2a8e675a28cef 183 PRINTS PR00885 Bacterial general secretion pathway protein H signature 143 158 6.6E-10 T 13-10-2018 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 CDG55_08100 d52a5d321754b7f043d2a8e675a28cef 183 Gene3D G3DSA:3.30.700.10 11 76 8.0E-7 T 13-10-2018 CDG55_13335 236d348032b367cfd29bc2d2bd0b580f 175 Pfam PF01899 Na+/H+ ion antiporter subunit 18 164 8.4E-36 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CDG55_13335 236d348032b367cfd29bc2d2bd0b580f 175 PIRSF PIRSF019239 7 170 7.5E-46 T 13-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 CDG55_01435 bbd6ee4268e5a0cb27370009b05198d2 368 Pfam PF01757 Acyltransferase family 11 350 8.6E-22 T 13-10-2018 IPR002656 Acyltransferase 3 GO:0016747 CDG55_09020 72566ba27e401abf5a651dba3ecde93a 116 SUPERFAMILY SSF75169 1 90 9.42E-5 T 13-10-2018 IPR027396 DsrEFH-like CDG55_09020 72566ba27e401abf5a651dba3ecde93a 116 Gene3D G3DSA:3.40.1260.10 1 115 1.5E-11 T 13-10-2018 IPR027396 DsrEFH-like CDG55_04155 3b1ad6da9173dfa743fe9f278d7da053 273 Pfam PF02673 Bacitracin resistance protein BacA 9 260 2.1E-84 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CDG55_04155 3b1ad6da9173dfa743fe9f278d7da053 273 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 259 4.0E-75 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CDG55_04155 3b1ad6da9173dfa743fe9f278d7da053 273 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 266 18.158 T 13-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 CDG55_04720 12f345a6360163c3b22f4c6e2d0cfb6c 186 Pfam PF02620 Uncharacterized ACR, COG1399 64 181 9.5E-16 T 13-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD CDG55_03770 b1fbd0780ebe2842407d421a29afbcf9 307 Gene3D G3DSA:3.40.50.1100 46 151 1.4E-109 T 13-10-2018 CDG55_03770 b1fbd0780ebe2842407d421a29afbcf9 307 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 17 292 8.8E-69 T 13-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme CDG55_03770 b1fbd0780ebe2842407d421a29afbcf9 307 Gene3D G3DSA:3.40.50.1100 19 299 1.4E-109 T 13-10-2018 CDG55_03770 b1fbd0780ebe2842407d421a29afbcf9 307 TIGRFAM TIGR01136 cysKM: cysteine synthase 17 303 6.2E-122 T 13-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CDG55_03770 b1fbd0780ebe2842407d421a29afbcf9 307 TIGRFAM TIGR01138 cysM: cysteine synthase B 18 303 5.2E-145 T 13-10-2018 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 CDG55_03770 b1fbd0780ebe2842407d421a29afbcf9 307 SUPERFAMILY SSF53686 15 300 8.38E-93 T 13-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CDG55_07550 7a19ecf94f84a948461f748a78c48ab3 70 Pfam PF13619 KTSC domain 11 56 7.8E-6 T 13-10-2018 IPR025309 KTSC domain CDG55_04465 a94b172b3d7dca5b1901564169510e43 207 Pfam PF01810 LysE type translocator 17 203 1.8E-30 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_13755 374856915be3baff57a3d5206d3ac6e3 108 Pfam PF00816 H-NS histone family 13 101 7.1E-22 T 13-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 CDG55_13755 374856915be3baff57a3d5206d3ac6e3 108 SMART SM00528 63 108 6.9E-17 T 13-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 CDG55_13755 374856915be3baff57a3d5206d3ac6e3 108 SUPERFAMILY SSF81273 66 108 4.71E-12 T 13-10-2018 CDG55_13755 374856915be3baff57a3d5206d3ac6e3 108 Gene3D G3DSA:4.10.430.10 58 108 9.9E-19 T 13-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 CDG55_11805 2fa385359799465d767ee3d839f16cb7 175 Pfam PF03724 META domain 65 170 9.7E-14 T 13-10-2018 IPR005184 Domain of unknown function DUF306, Meta/HslJ CDG55_11805 2fa385359799465d767ee3d839f16cb7 175 Gene3D G3DSA:2.40.128.270 61 174 1.3E-8 T 13-10-2018 IPR038670 HslJ-like superfamily CDG55_11455 3c7d4c46579ac12848b62d627788c447 293 Pfam PF08907 Domain of unknown function (DUF1853) 23 251 3.0E-46 T 13-10-2018 IPR015003 Protein of unknown function DUF1853 CDG55_03965 8d739f9d0ceda55fce7e9cea788015af 189 Pfam PF02325 YGGT family 108 177 5.3E-16 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 CDG55_03965 8d739f9d0ceda55fce7e9cea788015af 189 Pfam PF02325 YGGT family 11 79 2.0E-5 T 13-10-2018 IPR003425 CCB3/YggT GO:0016020 CDG55_10805 2ef00e2327cc245129488594ea691293 178 Gene3D G3DSA:2.60.40.1190 24 177 1.5E-7 T 13-10-2018 CDG55_04145 71081f2b04b89eb1d2131688f5336d0e 176 Gene3D G3DSA:2.160.10.10 1 172 8.6E-63 T 13-10-2018 CDG55_04145 71081f2b04b89eb1d2131688f5336d0e 176 SUPERFAMILY SSF51161 19 168 2.36E-46 T 13-10-2018 IPR011004 Trimeric LpxA-like superfamily CDG55_04145 71081f2b04b89eb1d2131688f5336d0e 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 20 46 0.0022 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_04145 71081f2b04b89eb1d2131688f5336d0e 176 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 90 123 9.3E-11 T 13-10-2018 IPR001451 Hexapeptide repeat CDG55_13345 ca595f62d2a63483b86effba62419187 126 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 12 96 8.8E-24 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 CDG55_13345 ca595f62d2a63483b86effba62419187 126 Pfam PF03334 Na+/H+ antiporter subunit 12 91 1.9E-24 T 13-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 CDG55_02215 d3ccc006c82331eb0f9fccca0c7554be 252 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 251 3.0E-113 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CDG55_02215 d3ccc006c82331eb0f9fccca0c7554be 252 Gene3D G3DSA:3.20.20.70 1 252 4.2E-109 T 13-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 CDG55_02215 d3ccc006c82331eb0f9fccca0c7554be 252 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 251 48.447 T 13-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 CDG55_02215 d3ccc006c82331eb0f9fccca0c7554be 252 Pfam PF00977 Histidine biosynthesis protein 5 234 1.0E-87 T 13-10-2018 IPR006062 Histidine biosynthesis GO:0000105 CDG55_02215 d3ccc006c82331eb0f9fccca0c7554be 252 SUPERFAMILY SSF51366 1 251 1.18E-85 T 13-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 CDG55_10610 a3c16161f0c4a313ab000a8cd4718b57 393 SUPERFAMILY SSF46894 218 282 8.22E-5 T 13-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 CDG55_10610 a3c16161f0c4a313ab000a8cd4718b57 393 Gene3D G3DSA:3.30.450.40 23 205 3.0E-37 T 13-10-2018 IPR029016 GAF-like domain superfamily CDG55_00600 ad2f4c8e70f581c1436818676e6f856f 342 Pfam PF11159 Protein of unknown function (DUF2939) 13 102 4.7E-27 T 13-10-2018 IPR021330 Protein of unknown function DUF2939 CDG55_06330 a05392ea190f29c966543be312609ba1 109 Pfam PF00037 4Fe-4S binding domain 34 55 5.8E-7 T 13-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CDG55_06330 a05392ea190f29c966543be312609ba1 109 PRINTS PR00354 7Fe ferredoxin signature 19 29 4.7E-18 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 CDG55_06330 a05392ea190f29c966543be312609ba1 109 PRINTS PR00354 7Fe ferredoxin signature 35 52 4.7E-18 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 CDG55_06330 a05392ea190f29c966543be312609ba1 109 PRINTS PR00354 7Fe ferredoxin signature 9 19 4.7E-18 T 13-10-2018 IPR000813 7Fe ferredoxin GO:0009055 CDG55_06330 a05392ea190f29c966543be312609ba1 109 Pfam PF11953 Domain of unknown function (DUF3470) 66 109 7.4E-16 T 13-10-2018 IPR022569 Ferredoxin, C-terminal CDG55_06330 a05392ea190f29c966543be312609ba1 109 Gene3D G3DSA:3.30.70.20 2 103 2.4E-33 T 13-10-2018 CDG55_06330 a05392ea190f29c966543be312609ba1 109 SUPERFAMILY SSF54862 1 81 2.51E-23 T 13-10-2018 CDG55_10205 ad64c1c8dc09e4dfd850763fcc94f2d4 266 Gene3D G3DSA:3.90.226.10 10 192 4.3E-58 T 13-10-2018 CDG55_10205 ad64c1c8dc09e4dfd850763fcc94f2d4 266 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 264 6.6E-39 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CDG55_10205 ad64c1c8dc09e4dfd850763fcc94f2d4 266 SUPERFAMILY SSF52096 9 262 4.27E-62 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_10205 ad64c1c8dc09e4dfd850763fcc94f2d4 266 Gene3D G3DSA:1.10.12.10 210 255 4.2E-28 T 13-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal CDG55_10720 c3b39efd33d8da38302b9d82101ba334 369 Gene3D G3DSA:1.10.530.10 207 367 4.1E-34 T 13-10-2018 CDG55_10720 c3b39efd33d8da38302b9d82101ba334 369 SUPERFAMILY SSF53955 167 317 3.83E-33 T 13-10-2018 IPR023346 Lysozyme-like domain superfamily CDG55_10720 c3b39efd33d8da38302b9d82101ba334 369 Pfam PF01464 Transglycosylase SLT domain 213 323 5.3E-23 T 13-10-2018 IPR008258 Transglycosylase SLT domain 1 CDG55_10720 c3b39efd33d8da38302b9d82101ba334 369 Gene3D G3DSA:3.40.190.10 36 185 1.6E-14 T 13-10-2018 CDG55_10720 c3b39efd33d8da38302b9d82101ba334 369 SUPERFAMILY SSF53850 52 124 5.35E-7 T 13-10-2018 CDG55_10720 c3b39efd33d8da38302b9d82101ba334 369 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 57 121 4.4E-6 T 13-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CDG55_12915 2f958691d53461eaaa9407504544b997 248 Pfam PF07070 SpoOM protein 2 216 2.6E-63 T 13-10-2018 IPR009776 Sporulation stage 0, protein M CDG55_06965 85add6606f347182a7a9b61d5fe6cab7 392 TIGRFAM TIGR00843 benE: benzoate transporter 9 382 4.6E-109 T 13-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 CDG55_06965 85add6606f347182a7a9b61d5fe6cab7 392 Pfam PF03594 Benzoate membrane transport protein 6 382 2.0E-128 T 13-10-2018 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 CDG55_02030 05fc7f8d98852dc1f1b76170e04f61e5 86 SUPERFAMILY SSF47413 6 63 5.07E-11 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_02030 05fc7f8d98852dc1f1b76170e04f61e5 86 SMART SM00530 10 65 2.8E-4 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_02030 05fc7f8d98852dc1f1b76170e04f61e5 86 Pfam PF12844 Helix-turn-helix domain 8 44 5.0E-9 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_02030 05fc7f8d98852dc1f1b76170e04f61e5 86 Gene3D G3DSA:1.10.260.40 1 76 7.4E-12 T 13-10-2018 CDG55_11965 88ffa8e4ce2d327fb105995e4214a783 845 Pfam PF06048 Domain of unknown function (DUF927) 244 525 4.5E-80 T 13-10-2018 IPR009270 Domain of unknown function DUF927 CDG55_11965 88ffa8e4ce2d327fb105995e4214a783 845 Gene3D G3DSA:3.40.1360.10 89 212 3.7E-10 T 13-10-2018 CDG55_02800 fd62ca3f5520f03623da29dad05173bc 253 Pfam PF10127 Predicted nucleotidyltransferase 3 230 4.4E-43 T 13-10-2018 IPR018775 Nucleotidyltransferase, predicted CDG55_13995 8ada7a8b8515efff68a50b31ef04c1b1 275 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 36 275 1.6E-32 T 13-10-2018 IPR010239 Conserved hypothetical protein CHP02001 CDG55_13995 8ada7a8b8515efff68a50b31ef04c1b1 275 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 7 275 1.8E-39 T 13-10-2018 IPR010239 Conserved hypothetical protein CHP02001 CDG55_07860 0ad5bcb80878be39c4ad7e8649c4fd43 90 Pfam PF07023 Protein of unknown function (DUF1315) 4 83 1.4E-32 T 13-10-2018 IPR009749 Protein of unknown function DUF1315 CDG55_00425 33b5936e5ff50835cfb023159ae08954 109 Pfam PF03091 CutA1 divalent ion tolerance protein 7 103 3.2E-35 T 13-10-2018 IPR004323 Divalent ion tolerance protein, CutA GO:0010038 CDG55_00425 33b5936e5ff50835cfb023159ae08954 109 SUPERFAMILY SSF54913 4 104 3.04E-36 T 13-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta CDG55_00425 33b5936e5ff50835cfb023159ae08954 109 Gene3D G3DSA:3.30.70.120 2 108 4.8E-39 T 13-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CDG55_07775 7a4e772f81fa8149d5923558972b27f9 124 SUPERFAMILY SSF51230 3 122 5.23E-44 T 13-10-2018 IPR011053 Single hybrid motif CDG55_07775 7a4e772f81fa8149d5923558972b27f9 124 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 4 123 35.915 T 13-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CDG55_07775 7a4e772f81fa8149d5923558972b27f9 124 Pfam PF01597 Glycine cleavage H-protein 7 122 1.0E-44 T 13-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate CDG55_07775 7a4e772f81fa8149d5923558972b27f9 124 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 2 122 1.3E-49 T 13-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 CDG55_07775 7a4e772f81fa8149d5923558972b27f9 124 Gene3D G3DSA:2.40.50.100 1 124 1.7E-48 T 13-10-2018 CDG55_03720 06f3417df41b82a455a423d8562a7d9a 107 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 5 99 7.0E-35 T 13-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 CDG55_00740 064851cabc42ddcfe26a0176c654408b 234 Pfam PF13610 DDE domain 74 212 8.8E-50 T 13-10-2018 IPR032874 DDE domain CDG55_00740 064851cabc42ddcfe26a0176c654408b 234 Gene3D G3DSA:3.30.420.10 67 210 2.0E-5 T 13-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 CDG55_00740 064851cabc42ddcfe26a0176c654408b 234 SUPERFAMILY SSF53098 72 191 8.85E-9 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_08265 5abd6d084df419e61b5f7849cc64fd9d 123 Pfam PF11042 Protein of unknown function (DUF2750) 20 111 4.6E-17 T 13-10-2018 IPR021284 Protein of unknown function DUF2750 CDG55_03370 e798ebcb90e2240a67b2dc343348065f 663 Pfam PF05787 Bacterial protein of unknown function (DUF839) 202 600 4.5E-21 T 13-10-2018 IPR008557 Protein of unknown function DUF839 CDG55_00850 3ce9f9939623b85d8ca13098e047555d 288 Pfam PF13280 WYL domain 119 281 4.1E-11 T 13-10-2018 IPR026881 WYL domain CDG55_00850 3ce9f9939623b85d8ca13098e047555d 288 PIRSF PIRSF015558 1 281 8.7E-72 T 13-10-2018 IPR016634 WYL domain protein, s026 type CDG55_08225 eb44e0007f9b448a1d0d6e7850a2d936 436 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 414 2.5E-143 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CDG55_08225 eb44e0007f9b448a1d0d6e7850a2d936 436 Pfam PF05525 Branched-chain amino acid transport protein 8 428 3.6E-143 T 13-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 CDG55_08300 374aac5b0feb0a8098f96e0b12640cea 152 Gene3D G3DSA:3.40.630.30 11 133 7.2E-16 T 13-10-2018 CDG55_08300 374aac5b0feb0a8098f96e0b12640cea 152 Pfam PF13673 Acetyltransferase (GNAT) domain 20 124 1.6E-8 T 13-10-2018 IPR000182 GNAT domain CDG55_08300 374aac5b0feb0a8098f96e0b12640cea 152 SUPERFAMILY SSF55729 10 131 1.05E-17 T 13-10-2018 IPR016181 Acyl-CoA N-acyltransferase CDG55_13315 d39457053c2119f5e82950a988fb3a49 460 SUPERFAMILY SSF52540 1 373 4.98E-12 T 13-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase CDG55_13315 d39457053c2119f5e82950a988fb3a49 460 Pfam PF13476 AAA domain 8 240 7.7E-16 T 13-10-2018 IPR038729 Rad50/SbcC-type AAA domain CDG55_13315 d39457053c2119f5e82950a988fb3a49 460 Gene3D G3DSA:3.40.50.300 1 379 8.9E-19 T 13-10-2018 CDG55_12460 1742993518e3556b141c91957727147f 257 SUPERFAMILY SSF69572 9 250 5.1E-57 T 13-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 CDG55_12460 1742993518e3556b141c91957727147f 257 Gene3D G3DSA:3.40.50.720 5 257 4.8E-89 T 13-10-2018 CDG55_12460 1742993518e3556b141c91957727147f 257 Pfam PF00899 ThiF family 29 255 2.0E-36 T 13-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 CDG55_10315 a1a68e3798a4f3ac28ad0b1a2ae628fd 827 SUPERFAMILY SSF51126 9 386 6.98E-12 T 13-10-2018 IPR011050 Pectin lyase fold/virulence factor CDG55_12535 d54652fe2171448fb72c18e04f3387f4 346 SUPERFAMILY SSF52980 36 221 3.16E-32 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_12535 d54652fe2171448fb72c18e04f3387f4 346 Gene3D G3DSA:3.90.320.10 35 243 1.8E-37 T 13-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal CDG55_12535 d54652fe2171448fb72c18e04f3387f4 346 Pfam PF09588 YqaJ-like viral recombinase domain 38 179 1.7E-35 T 13-10-2018 IPR019080 YqaJ viral recombinase CDG55_12535 d54652fe2171448fb72c18e04f3387f4 346 TIGRFAM TIGR03033 phage_rel_nuc: putative phage-type endonuclease 33 189 4.5E-39 T 13-10-2018 IPR017482 Putative phage-type endonuclease CDG55_06260 298efb6f80dea4395de0e8271a99114f 157 Gene3D G3DSA:2.40.128.640 46 156 1.4E-39 T 13-10-2018 CDG55_06260 298efb6f80dea4395de0e8271a99114f 157 Pfam PF04170 NlpE N-terminal domain 59 145 5.3E-28 T 13-10-2018 IPR007298 Copper resistance lipoprotein NlpE CDG55_00050 730cf42e5407dbe3e32f539c3a442816 197 Gene3D G3DSA:3.40.50.1390 4 138 3.6E-27 T 13-10-2018 CDG55_00050 730cf42e5407dbe3e32f539c3a442816 197 Gene3D G3DSA:1.10.10.60 156 197 8.2E-8 T 13-10-2018 CDG55_00050 730cf42e5407dbe3e32f539c3a442816 197 Pfam PF02796 Helix-turn-helix domain of resolvase 157 196 4.3E-8 T 13-10-2018 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 CDG55_00050 730cf42e5407dbe3e32f539c3a442816 197 SUPERFAMILY SSF53041 1 149 8.5E-27 T 13-10-2018 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily GO:0000150|GO:0003677|GO:0006310 CDG55_00050 730cf42e5407dbe3e32f539c3a442816 197 Pfam PF00239 Resolvase, N terminal domain 5 149 7.0E-27 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDG55_00050 730cf42e5407dbe3e32f539c3a442816 197 SMART SM00857 3 153 2.5E-34 T 13-10-2018 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 CDG55_05075 18e8dec84c0299cc0243e223a287cc52 205 Pfam PF01810 LysE type translocator 15 202 4.6E-46 T 13-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 CDG55_13200 2c8ad9259471998ebf08df16fd5b14c6 605 SUPERFAMILY SSF51735 397 525 2.54E-27 T 13-10-2018 IPR036291 NAD(P)-binding domain superfamily CDG55_13200 2c8ad9259471998ebf08df16fd5b14c6 605 Gene3D G3DSA:3.40.50.720 395 555 2.5E-33 T 13-10-2018 CDG55_13200 2c8ad9259471998ebf08df16fd5b14c6 605 Gene3D G3DSA:1.20.1530.20 1 378 1.2E-54 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CDG55_13200 2c8ad9259471998ebf08df16fd5b14c6 605 Pfam PF02254 TrkA-N domain 398 510 3.6E-22 T 13-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 CDG55_13200 2c8ad9259471998ebf08df16fd5b14c6 605 Pfam PF00999 Sodium/hydrogen exchanger family 8 369 4.8E-36 T 13-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 CDG55_04550 29aed80df26258958a7118cd0a781836 163 SUPERFAMILY SSF50249 81 162 3.43E-6 T 13-10-2018 IPR012340 Nucleic acid-binding, OB-fold CDG55_04550 29aed80df26258958a7118cd0a781836 163 Gene3D G3DSA:2.40.50.140 80 163 2.2E-5 T 13-10-2018 CDG55_04105 05942a74cabb668fb875c2c4a0416174 277 Gene3D G3DSA:3.90.70.10 50 208 2.3E-29 T 13-10-2018 CDG55_04105 05942a74cabb668fb875c2c4a0416174 277 Pfam PF03412 Peptidase C39 family 63 197 3.9E-16 T 13-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 CDG55_05930 8cf9f80b8e7f87aa58943c6a641b89d9 548 SUPERFAMILY SSF47226 424 535 2.16E-6 T 13-10-2018 IPR036641 HPT domain superfamily GO:0000160 CDG55_09835 db28eed6b125a1250f901272f13649f1 439 PIRSF PIRSF005353 1 438 1.6E-184 T 13-10-2018 IPR026033 Purine permease PbuG-like CDG55_09835 db28eed6b125a1250f901272f13649f1 439 Pfam PF00860 Permease family 27 398 9.3E-54 T 13-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 CDG55_09515 158bed05665e6895a9d16a3d1ee917ad 895 Pfam PF01345 Domain of unknown function DUF11 202 312 4.7E-6 T 13-10-2018 IPR001434 Domain of unknown function DUF11 CDG55_01900 630fa624a14628c6e2735986701e1ae7 338 SUPERFAMILY SSF55961 165 305 1.48E-8 T 13-10-2018 CDG55_09400 4bda35435bdc10e55e48eea69b5733c4 150 SUPERFAMILY SSF46689 115 149 1.3E-7 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_09400 4bda35435bdc10e55e48eea69b5733c4 150 Gene3D G3DSA:1.10.10.2730 111 150 3.0E-10 T 13-10-2018 CDG55_06800 1503c342cdbbf8f64912e38bf1fff5b0 267 Pfam PF01925 Sulfite exporter TauE/SafE 6 253 4.1E-40 T 13-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 CDG55_00025 8403b16e8f6804a6b1a02760c1214047 102 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 97 3.7E-12 T 13-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family CDG55_00025 8403b16e8f6804a6b1a02760c1214047 102 Gene3D G3DSA:3.30.2310.20 1 97 3.6E-10 T 13-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily CDG55_08060 0fb4c1b52be4a278c6b65a7040d0b50c 142 Gene3D G3DSA:3.30.420.270 60 131 3.1E-6 T 13-10-2018 CDG55_08060 0fb4c1b52be4a278c6b65a7040d0b50c 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 134 2.3E-24 T 13-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 CDG55_04515 710210e0e09606118e40855e91707c14 189 SUPERFAMILY SSF51283 3 188 9.81E-55 T 13-10-2018 IPR036157 dUTPase-like superfamily CDG55_04515 710210e0e09606118e40855e91707c14 189 Gene3D G3DSA:2.70.40.10 1 161 5.8E-55 T 13-10-2018 IPR036157 dUTPase-like superfamily CDG55_04515 710210e0e09606118e40855e91707c14 189 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 5 188 1.6E-51 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 CDG55_04515 710210e0e09606118e40855e91707c14 189 Hamap MF_00146 dCTP deaminase [dcd]. 1 189 29.002 T 13-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 CDG55_04515 710210e0e09606118e40855e91707c14 189 Pfam PF00692 dUTPase 77 184 5.8E-9 T 13-10-2018 IPR029054 dUTPase-like CDG55_03790 81ea1a01155304907dc705384e8e6a6e 334 Pfam PF03783 Curli production assembly/transport component CsgG 128 268 2.2E-11 T 13-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 CDG55_00410 c284243e9bbe665d8c16bad8c892eb90 509 Pfam PF14319 Transposase zinc-binding domain 51 149 1.0E-20 T 13-10-2018 IPR026889 Transposase zinc-binding domain CDG55_00410 c284243e9bbe665d8c16bad8c892eb90 509 Pfam PF04986 Putative transposase 179 403 2.6E-47 T 13-10-2018 IPR007069 Transposase, IS801/IS1294 GO:0003677|GO:0004803|GO:0006313 CDG55_10865 28fb4d147bc7e28c84902c07750c9680 569 SUPERFAMILY SSF117892 59 199 7.06E-22 T 13-10-2018 IPR036013 Band 7/SPFH domain superfamily CDG55_10865 28fb4d147bc7e28c84902c07750c9680 569 Gene3D G3DSA:3.30.479.30 68 187 1.9E-27 T 13-10-2018 CDG55_10865 28fb4d147bc7e28c84902c07750c9680 569 Pfam PF15975 Flotillin 427 552 7.9E-40 T 13-10-2018 IPR031905 Flotillin, C-terminal domain Reactome: R-HSA-8849932 CDG55_10865 28fb4d147bc7e28c84902c07750c9680 569 SMART SM00244 28 197 1.6E-5 T 13-10-2018 IPR001107 Band 7 domain CDG55_10865 28fb4d147bc7e28c84902c07750c9680 569 Pfam PF01145 SPFH domain / Band 7 family 41 185 2.2E-17 T 13-10-2018 IPR001107 Band 7 domain CDG55_02605 5275db500bd9e182cbc380a14bdc584e 415 Pfam PF04577 Protein of unknown function (DUF563) 151 378 2.1E-31 T 13-10-2018 IPR007657 Glycosyltransferase 61 GO:0016757 CDG55_11005 0537d7434c18483845a4353aacbeceeb 126 SUPERFAMILY SSF54593 7 124 1.41E-14 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDG55_11005 0537d7434c18483845a4353aacbeceeb 126 Gene3D G3DSA:3.10.180.10 4 124 2.6E-15 T 13-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CDG55_03025 1b7f1ca2c9207f58b431c67ce01b8943 143 SUPERFAMILY SSF55811 5 137 2.17E-21 T 13-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 CDG55_03025 1b7f1ca2c9207f58b431c67ce01b8943 143 Pfam PF00293 NUDIX domain 18 136 5.2E-15 T 13-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 CDG55_03025 1b7f1ca2c9207f58b431c67ce01b8943 143 Gene3D G3DSA:3.90.79.10 4 141 7.9E-20 T 13-10-2018 CDG55_13100 7c23ddaad96521aea62c5648181c8278 342 Pfam PF13271 Domain of unknown function (DUF4062) 7 85 1.0E-12 T 13-10-2018 IPR025139 Domain of unknown function DUF4062 CDG55_01410 9ceed8e4fef9760aba8332c9b7060346 245 SUPERFAMILY SSF53474 6 244 2.75E-42 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_01410 9ceed8e4fef9760aba8332c9b7060346 245 Pfam PF01738 Dienelactone hydrolase family 22 243 2.0E-45 T 13-10-2018 IPR002925 Dienelactone hydrolase GO:0016787 CDG55_01410 9ceed8e4fef9760aba8332c9b7060346 245 Gene3D G3DSA:3.40.50.1820 2 245 2.8E-59 T 13-10-2018 IPR029058 Alpha/Beta hydrolase fold CDG55_07545 3406eda89b740053d6e63a6d2829dbd1 399 Pfam PF00487 Fatty acid desaturase 126 344 1.5E-27 T 13-10-2018 IPR005804 Fatty acid desaturase domain GO:0006629 CDG55_07175 71e9bab14a5f95ff3c88174ae4499acd 127 Gene3D G3DSA:3.30.56.110 8 127 1.1E-48 T 13-10-2018 CDG55_07175 71e9bab14a5f95ff3c88174ae4499acd 127 Pfam PF09996 Uncharacterized protein conserved in bacteria (DUF2237) 13 126 4.9E-49 T 13-10-2018 IPR018714 Protein of unknown function DUF2237 CDG55_14085 1408f0bb7c23f0a95581da7ba36727a2 472 Pfam PF06123 Inner membrane protein CreD 7 465 2.5E-105 T 13-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD CDG55_14085 1408f0bb7c23f0a95581da7ba36727a2 472 PIRSF PIRSF004548 1 471 4.5E-97 T 13-10-2018 IPR010364 Uncharacterised protein family, inner membrane CreD CDG55_14395 1a6fc746c16149b274110de7d2da5728 140 Pfam PF07681 DoxX 22 101 1.2E-16 T 13-10-2018 IPR032808 DoxX family CDG55_05510 ad681186c6f3e18112b4ad9f6448f87a 825 Pfam PF02687 FtsX-like permease family 727 814 3.9E-10 T 13-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 CDG55_13750 d8e880c315cdef8bc7891c8b2bbd0a58 247 Pfam PF01203 Type II secretion system (T2SS), protein N 42 205 8.3E-17 T 13-10-2018 IPR022792 Type II secretion system, protein N CDG55_06015 d9bbdf731f915acc35c4863f05a6ad55 626 Pfam PF13387 Domain of unknown function (DUF4105) 120 289 3.9E-57 T 13-10-2018 IPR025178 Domain of unknown function DUF4105 CDG55_14385 9d81d05fc0918bda65e83abdbeed23db 412 Pfam PF04286 Protein of unknown function (DUF445) 23 143 2.3E-8 T 13-10-2018 IPR007383 Protein of unknown function DUF445 CDG55_14385 9d81d05fc0918bda65e83abdbeed23db 412 Pfam PF04286 Protein of unknown function (DUF445) 226 342 6.1E-9 T 13-10-2018 IPR007383 Protein of unknown function DUF445 CDG55_03250 e565c991ac20624055007005026e2b94 496 Pfam PF00743 Flavin-binding monooxygenase-like 76 389 6.3E-11 T 13-10-2018 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 CDG55_03250 e565c991ac20624055007005026e2b94 496 Pfam PF13450 NAD(P)-binding Rossmann-like domain 9 62 4.0E-7 T 13-10-2018 CDG55_03250 e565c991ac20624055007005026e2b94 496 Gene3D G3DSA:3.50.50.60 3 155 7.0E-35 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_03250 e565c991ac20624055007005026e2b94 496 Gene3D G3DSA:3.50.50.60 300 479 3.9E-11 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_03250 e565c991ac20624055007005026e2b94 496 Gene3D G3DSA:3.50.50.60 156 250 1.7E-12 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_03250 e565c991ac20624055007005026e2b94 496 SUPERFAMILY SSF51905 1 388 2.09E-49 T 13-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily CDG55_05295 b58b3319dffe3ed0dafd6d4395cf8a77 187 Pfam PF01914 MarC family integral membrane protein 6 180 3.6E-16 T 13-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 CDG55_00530 a63cb8f9da73bc71ae15a4a40bf982d4 234 Pfam PF13610 DDE domain 75 212 2.6E-49 T 13-10-2018 IPR032874 DDE domain CDG55_00530 a63cb8f9da73bc71ae15a4a40bf982d4 234 SUPERFAMILY SSF53098 73 191 8.72E-7 T 13-10-2018 IPR012337 Ribonuclease H-like superfamily CDG55_11990 33ab41cc29c5f210d5649613e35ac0f0 105 SUPERFAMILY SSF46955 57 101 3.84E-5 T 13-10-2018 IPR009061 Putative DNA-binding domain superfamily CDG55_11990 33ab41cc29c5f210d5649613e35ac0f0 105 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 57 96 1.1E-9 T 13-10-2018 IPR010260 DNA-binding transcriptional activator AlpA CDG55_07585 6c562498bf6b23d2666a3db6ae3b981c 160 Pfam PF11948 Protein of unknown function (DUF3465) 40 160 7.1E-53 T 13-10-2018 IPR021856 Protein of unknown function DUF3465 CDG55_00175 adfa5aa2ede349683f1a3e81b1d11e86 101 Pfam PF01381 Helix-turn-helix 19 66 7.1E-11 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_00175 adfa5aa2ede349683f1a3e81b1d11e86 101 SMART SM00530 18 71 4.5E-10 T 13-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 CDG55_00175 adfa5aa2ede349683f1a3e81b1d11e86 101 Gene3D G3DSA:1.10.260.40 6 79 8.8E-19 T 13-10-2018 CDG55_00175 adfa5aa2ede349683f1a3e81b1d11e86 101 SUPERFAMILY SSF47413 4 66 1.72E-13 T 13-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 CDG55_15130 c3fa3d60262ee063f77d8b6f7fa1ba04 83 Pfam PF04226 Transglycosylase associated protein 34 81 1.4E-13 T 13-10-2018 IPR007341 Transglycosylase-associated protein GO:0016021 CDG55_11460 26ab3adad824a4a254b6a6c251e4541a 46 Pfam PF08085 Entericidin EcnA/B family 19 39 4.4E-9 T 13-10-2018 IPR012556 Entericidin A/B GO:0009636|GO:0016020 CDG55_01095 eda76da0aba90ae84fb80020e9849fd0 129 Pfam PF05717 IS66 Orf2 like protein 24 120 2.1E-30 T 13-10-2018 IPR008878 Transposase IS66, Orf2 CDG55_12820 7d72759d4e790ddffd687691a93e0d08 176 Gene3D G3DSA:3.40.220.10 1 173 3.9E-72 T 13-10-2018 CDG55_12820 7d72759d4e790ddffd687691a93e0d08 176 Pfam PF01661 Macro domain 21 137 1.3E-43 T 13-10-2018 IPR002589 Macro domain CDG55_12820 7d72759d4e790ddffd687691a93e0d08 176 SMART SM00506 4 137 9.3E-51 T 13-10-2018 IPR002589 Macro domain CDG55_12820 7d72759d4e790ddffd687691a93e0d08 176 SUPERFAMILY SSF52949 4 170 1.16E-63 T 13-10-2018 CDG55_09765 e4eeca42770d113b482fac560c5b4119 91 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 41 71 1.0E-11 T 13-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 CDG55_09765 e4eeca42770d113b482fac560c5b4119 91 SUPERFAMILY SSF57716 41 75 2.14E-7 T 13-10-2018 CDG55_09765 e4eeca42770d113b482fac560c5b4119 91 Gene3D G3DSA:1.20.120.910 1 77 1.1E-20 T 13-10-2018 CDG55_14205 9fd5515e8205e481af359eadf46c665d 136 Pfam PF11162 Protein of unknown function (DUF2946) 12 133 8.9E-7 T 13-10-2018 IPR021333 Protein of unknown function DUF2946 CDG55_00190 a17f854db72343d09ac5b69928ec53ff 55 Pfam PF10832 Protein of unknown function (DUF2559) 4 33 3.3E-6 T 13-10-2018 IPR022541 Protein of unknown function DUF2559 CDG55_12455 2d7dcc6064114db0e2b9572953b703be 160 Gene3D G3DSA:3.90.1720.10 44 159 2.4E-29 T 13-10-2018 CDG55_06790 e7a35538d2599aa9a3453c5788cd2447 227 SMART SM00849 12 171 1.8E-25 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_06790 e7a35538d2599aa9a3453c5788cd2447 227 SUPERFAMILY SSF56281 1 226 6.16E-51 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_06790 e7a35538d2599aa9a3453c5788cd2447 227 Pfam PF00753 Metallo-beta-lactamase superfamily 12 82 2.9E-6 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_06790 e7a35538d2599aa9a3453c5788cd2447 227 Pfam PF00753 Metallo-beta-lactamase superfamily 109 171 1.9E-7 T 13-10-2018 IPR001279 Metallo-beta-lactamase CDG55_06790 e7a35538d2599aa9a3453c5788cd2447 227 Gene3D G3DSA:3.60.15.10 1 227 1.3E-78 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_09865 a8faf8561cf3621acd7a01ef570c10b4 196 Pfam PF16357 Putative PepSY_TM-like 11 192 2.0E-40 T 13-10-2018 IPR032307 Putative PepSY TM-like protein CDG55_02595 ee02a48f567ce76cec3d44b6f3c65649 414 Pfam PF05893 Acyl-CoA reductase (LuxC) 88 400 7.7E-30 T 13-10-2018 IPR008670 Long-chain-fatty-acyl-CoA reductase, LuxC GO:0003995|GO:0008218|GO:0055114 KEGG: 00073+1.2.1.50|MetaCyc: PWY-7723 CDG55_01225 3bfddaeb91483dffd27aa39bf3f161b6 334 Gene3D G3DSA:3.40.190.170 47 253 8.5E-13 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily CDG55_11345 f70548fcfa40a3cb836bb44876c03347 358 Pfam PF06674 Protein of unknown function (DUF1176) 29 351 4.6E-89 T 13-10-2018 IPR009560 Protein of unknown function DUF1176 CDG55_10970 9eb77f7cf007a97f8a8b2940e230dd87 95 Pfam PF04359 Protein of unknown function (DUF493) 13 95 1.1E-24 T 13-10-2018 IPR007454 Uncharacterised protein family UPF0250 CDG55_10970 9eb77f7cf007a97f8a8b2940e230dd87 95 Gene3D G3DSA:3.30.70.260 8 95 3.2E-23 T 13-10-2018 CDG55_10970 9eb77f7cf007a97f8a8b2940e230dd87 95 SUPERFAMILY SSF117991 9 95 3.4E-22 T 13-10-2018 IPR027471 YbeD-like domain superfamily CDG55_07680 953fb132a1d50225f1951891371e9599 187 Pfam PF04186 FxsA cytoplasmic membrane protein 6 114 3.4E-21 T 13-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 CDG55_09900 6ad547b45ef50b5f2b07ff457012779b 287 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 6 40 1.2E-8 T 13-10-2018 IPR011723 Zinc finger/thioredoxin putative CDG55_09900 6ad547b45ef50b5f2b07ff457012779b 287 Pfam PF11906 Protein of unknown function (DUF3426) 145 283 1.0E-11 T 13-10-2018 IPR021834 Protein of unknown function DUF3426 CDG55_07275 f2d7c8f634008fbb2f130021e99d7d60 374 Pfam PF05816 Toxic anion resistance protein (TelA) 47 363 1.5E-84 T 13-10-2018 IPR008863 Toxic anion resistance CDG55_07275 f2d7c8f634008fbb2f130021e99d7d60 374 PIRSF PIRSF026508 4 374 1.6E-115 T 13-10-2018 IPR008863 Toxic anion resistance CDG55_01665 3e7e14d252260914f856df9ab9a18cea 356 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 336 1.1E-40 T 13-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 CDG55_01665 3e7e14d252260914f856df9ab9a18cea 356 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 39 347 1.8E-133 T 13-10-2018 IPR017778 ABC transporter, urea, permease protein, UrtC CDG55_07965 9b8da4d3f4ab203fe4523ec676d9cd54 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 5 179 1.5E-51 T 13-10-2018 IPR018636 Protein of unknown function DUF2058 CDG55_08310 2d791453290532afb13f8300c9e94c89 33 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 28 2.2E-14 T 13-10-2018 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 CDG55_08310 2d791453290532afb13f8300c9e94c89 33 Pfam PF08173 Membrane bound YbgT-like protein 1 26 2.0E-12 T 13-10-2018 IPR012994 Membrane bound YbgT-like CDG55_01750 4484d736ed511c3f09d0a36ab351fe35 324 Pfam PF13391 HNH endonuclease 219 270 1.2E-5 T 13-10-2018 IPR003615 HNH nuclease CDG55_03760 6f3ba0a0aa63c3f38865231952466c0b 262 Pfam PF00378 Enoyl-CoA hydratase/isomerase 7 221 2.8E-44 T 13-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 CDG55_03760 6f3ba0a0aa63c3f38865231952466c0b 262 SUPERFAMILY SSF52096 3 241 2.78E-66 T 13-10-2018 IPR029045 ClpP/crotonase-like domain superfamily CDG55_03760 6f3ba0a0aa63c3f38865231952466c0b 262 Gene3D G3DSA:3.90.226.10 2 248 1.9E-67 T 13-10-2018 CDG55_00465 6547648ba11b86dc807dbd964ecb670d 95 Gene3D G3DSA:3.10.450.530 1 90 2.5E-18 T 13-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily CDG55_00465 6547648ba11b86dc807dbd964ecb670d 95 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 7 88 7.8E-27 T 13-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system CDG55_02075 1b6aa8dfe88f88dbd6dbaf965d51c918 348 Pfam PF07603 Protein of unknown function (DUF1566) 197 345 1.2E-27 T 13-10-2018 IPR011460 Protein of unknown function DUF1566 CDG55_09710 258dd68097287eda8ccd5d1e64360a4b 244 Pfam PF11340 Protein of unknown function (DUF3142) 102 186 6.1E-15 T 13-10-2018 IPR021488 Protein of unknown function DUF3142 CDG55_09710 258dd68097287eda8ccd5d1e64360a4b 244 SUPERFAMILY SSF51445 99 199 1.26E-5 T 13-10-2018 IPR017853 Glycoside hydrolase superfamily CDG55_13125 991d993b85875813b1979e4fc4c56d67 63 Pfam PF13490 Putative zinc-finger 4 38 9.9E-6 T 13-10-2018 IPR027383 Putative zinc-finger CDG55_02495 8c125f88bb4a6fd95f9c747e0f9e040b 288 Gene3D G3DSA:3.30.70.1070 82 181 1.2E-5 T 13-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 CDG55_05615 396cf9beefd43b90f78a86cf6b6b83c0 309 Pfam PF13737 Transposase DDE domain 23 131 4.2E-39 T 13-10-2018 IPR025668 Transposase DDE domain CDG55_01275 396cf9beefd43b90f78a86cf6b6b83c0 309 Pfam PF13737 Transposase DDE domain 23 131 4.2E-39 T 13-10-2018 IPR025668 Transposase DDE domain CDG55_08055 25901424a58d838ffa8c6725b927f302 209 Pfam PF01618 MotA/TolQ/ExbB proton channel family 64 184 1.4E-34 T 13-10-2018 IPR002898 MotA/TolQ/ExbB proton channel CDG55_08575 0356e695bc8f547f10e684b6b3801e94 330 PIRSF PIRSF034367 1 325 7.4E-175 T 13-10-2018 IPR015004 Protein of unknown function DUF1852 CDG55_08575 0356e695bc8f547f10e684b6b3801e94 330 Pfam PF08908 Domain of unknown function (DUF1852) 1 321 4.0E-173 T 13-10-2018 IPR015004 Protein of unknown function DUF1852 CDG55_01155 4d853062891fea46fa15511c244b0da1 70 Pfam PF11809 Domain of unknown function (DUF3330) 1 70 6.1E-34 T 13-10-2018 IPR021767 Transposon Tn21 modulator protein CDG55_12920 250c434bfcde65db23b3f576f6883f97 477 Pfam PF10009 Uncharacterized protein conserved in bacteria (DUF2252) 74 462 8.4E-125 T 13-10-2018 IPR018721 Protein of unknown function DUF2252 CDG55_11275 e3d6abe18f1780232148d2af8d7f6e69 427 SUPERFAMILY SSF56935 14 427 5.86E-47 T 13-10-2018 CDG55_11275 e3d6abe18f1780232148d2af8d7f6e69 427 Gene3D G3DSA:2.40.160.60 30 427 1.9E-26 T 13-10-2018 CDG55_11815 a783d2e44380f19d26b406ec45561826 480 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 2 446 3.7E-118 T 13-10-2018 IPR003846 Uncharacterised protein family UPF0061 CDG55_11395 87f31ef4a38882b48b347541a3146197 194 Pfam PF14317 YcxB-like protein 111 185 1.4E-18 T 13-10-2018 IPR025588 YcxB-like protein CDG55_12810 b20946ebbddba07bb20df95f0d46df12 81 Pfam PF04102 SlyX 16 81 3.0E-17 T 13-10-2018 IPR007236 SlyX CDG55_07140 6d1a01e66284d05d327f6ab259df83e2 284 Gene3D G3DSA:3.10.129.10 33 284 2.9E-64 T 13-10-2018 CDG55_07140 6d1a01e66284d05d327f6ab259df83e2 284 Pfam PF01575 MaoC like domain 174 275 2.9E-13 T 13-10-2018 IPR002539 MaoC-like dehydratase domain CDG55_07140 6d1a01e66284d05d327f6ab259df83e2 284 SUPERFAMILY SSF54637 177 282 2.24E-17 T 13-10-2018 IPR029069 HotDog domain superfamily CDG55_01000 025cd1f9d36ceba71a9e1af2ff98d1e3 106 Pfam PF06296 RelE toxin of RelE / RelB toxin-antitoxin system 41 102 7.3E-12 T 13-10-2018 IPR009387 Toxin HigB-2 CDG55_01000 025cd1f9d36ceba71a9e1af2ff98d1e3 106 PIRSF PIRSF039032 1 105 2.1E-38 T 13-10-2018 IPR009387 Toxin HigB-2 CDG55_08640 f658fd68aaa340ac9258cb3b94e7d4d1 395 Pfam PF05762 VWA domain containing CoxE-like protein 190 277 1.8E-8 T 13-10-2018 IPR008912 Uncharacterised protein family CoxE-like CDG55_10330 48d64184edd3977a35db6610917c512f 397 Pfam PF01594 AI-2E family transporter 10 342 3.8E-59 T 13-10-2018 IPR002549 Transmembrane protein TqsA-like CDG55_07735 167aa0be07fd9a09addce49bd2df4b4a 177 Pfam PF04970 Lecithin retinol acyltransferase 8 108 6.3E-17 T 13-10-2018 IPR007053 LRAT-like domain CDG55_12650 566ba0cf36eb97c21c820a5629a17122 346 Gene3D G3DSA:1.20.1530.20 1 340 2.4E-24 T 13-10-2018 IPR038770 Sodium/solute symporter superfamily CDG55_12650 566ba0cf36eb97c21c820a5629a17122 346 Pfam PF01758 Sodium Bile acid symporter family 51 247 1.6E-60 T 13-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 CDG55_12650 566ba0cf36eb97c21c820a5629a17122 346 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 6 334 5.2E-129 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 CDG55_12650 566ba0cf36eb97c21c820a5629a17122 346 PIRSF PIRSF005508 1 346 8.4E-133 T 13-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 CDG55_06940 b87c017af620bda457e59fd54b4cebe4 202 Gene3D G3DSA:3.90.1570.10 10 181 9.1E-18 T 13-10-2018 CDG55_06940 b87c017af620bda457e59fd54b4cebe4 202 Pfam PF05685 Putative restriction endonuclease 20 172 3.4E-24 T 13-10-2018 IPR008538 Domain of unknown function DUF820 CDG55_06940 b87c017af620bda457e59fd54b4cebe4 202 SUPERFAMILY SSF52980 9 177 2.14E-18 T 13-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 CDG55_07970 575ba8892bdd3db855f836da09a8a9dc 226 Pfam PF06912 Protein of unknown function (DUF1275) 14 208 4.7E-30 T 13-10-2018 IPR010699 Protein of unknown function DUF1275 CDG55_07150 19e328d3f17ca643efd6b9937b290b1e 408 Pfam PF14281 PD-(D/E)XK nuclease superfamily 34 213 2.8E-27 T 13-10-2018 IPR029470 PD-(D/E)XK nuclease superfamily 4 CDG55_08305 077b7c54025c35a8a08d1564fbbfaa92 98 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 20 95 2.6E-24 T 13-10-2018 IPR011846 Cyd operon protein YbgE CDG55_03655 188fbb15d48655861a26345d71480cce 125 Gene3D G3DSA:1.20.120.10 24 124 7.9E-27 T 13-10-2018 CDG55_03655 188fbb15d48655861a26345d71480cce 125 SUPERFAMILY SSF47175 25 123 1.29E-16 T 13-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 CDG55_03655 188fbb15d48655861a26345d71480cce 125 Pfam PF07361 Cytochrome b562 26 123 4.3E-19 T 13-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 CDG55_12900 4e1a6ad87bb28be7072bde05ec0bf781 68 Pfam PF09834 Predicted membrane protein (DUF2061) 16 66 2.5E-19 T 13-10-2018 IPR018638 Domain of unknown function DUF2061, membrane CDG55_11085 e45c1a5b49ca17faefb308f6805db7fc 145 Pfam PF01906 Putative heavy-metal-binding 58 142 9.0E-25 T 13-10-2018 IPR002765 Uncharacterised protein family UPF0145 CDG55_11085 e45c1a5b49ca17faefb308f6805db7fc 145 SUPERFAMILY SSF117782 55 144 1.06E-25 T 13-10-2018 IPR035439 UPF0145 domain superfamily CDG55_11085 e45c1a5b49ca17faefb308f6805db7fc 145 Gene3D G3DSA:3.30.110.70 47 145 7.0E-27 T 13-10-2018 CDG55_04165 4e7aa51096b4a399c771371e6ae1d9f6 481 Gene3D G3DSA:3.40.50.1460 292 443 2.2E-9 T 13-10-2018 CDG55_04165 4e7aa51096b4a399c771371e6ae1d9f6 481 SUPERFAMILY SSF52129 286 400 2.62E-6 T 13-10-2018 IPR029030 Caspase-like domain superfamily CDG55_04165 4e7aa51096b4a399c771371e6ae1d9f6 481 Pfam PF01650 Peptidase C13 family 233 440 5.2E-39 T 13-10-2018 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 CDG55_00250 3bd6540bfeb676938e6bf604768de3f7 356 SUPERFAMILY SSF56281 4 280 6.44E-17 T 13-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CDG55_12705 5a223ecacc7a1aa99fed495ef29cfcd9 169 Gene3D G3DSA:3.30.160.150 28 169 2.2E-39 T 13-10-2018 CDG55_12705 5a223ecacc7a1aa99fed495ef29cfcd9 169 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 8 164 20.284 T 13-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 CDG55_03450 314bf0c7f2b22a87542059b034ff85e4 180 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 103 149 1.2E-6 T 13-10-2018 IPR018637 Domain of unknown function DUF2059 CDG55_00860 0d87b5c412023f346b424ac22ab9e2fa 191 Pfam PF08747 Domain of unknown function (DUF1788) 68 189 9.7E-39 T 13-10-2018 IPR014858 Protein of unknown function DUF1788 CDG55_09015 d238f4234fa5afa76337655781c4402d 122 Gene3D G3DSA:3.40.1260.10 1 122 5.6E-36 T 13-10-2018 IPR027396 DsrEFH-like CDG55_09015 d238f4234fa5afa76337655781c4402d 122 SUPERFAMILY SSF75169 1 122 7.85E-30 T 13-10-2018 IPR027396 DsrEFH-like CDG55_09015 d238f4234fa5afa76337655781c4402d 122 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 3 122 1.3E-34 T 13-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 CDG55_09015 d238f4234fa5afa76337655781c4402d 122 Pfam PF02635 DsrE/DsrF-like family 1 122 1.5E-21 T 13-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein CDG55_12845 49ccdc631358227e6b759ff9ac7e6984 389 Gene3D G3DSA:1.20.58.2200 327 388 1.5E-7 T 13-10-2018 IPR038440 FimV, C-terminal domain superfamily CDG55_12285 38187849e881a9a3f3c5f9e2de37713d 353 SUPERFAMILY SSF159245 151 323 8.37E-5 T 13-10-2018 CDG55_13020 640abf01ae39ef6dc8ec4e68efc285ea 153 Pfam PF04657 Putative inner membrane exporter, YdcZ 12 148 4.4E-44 T 13-10-2018 IPR006750 Putative inner membrane exporter, YdcZ CDG55_01210 d6bb6daf8e3f3e72e933e78b9bd5955e 336 SUPERFAMILY SSF53850 133 231 5.43E-5 T 13-10-2018 CDG55_01210 d6bb6daf8e3f3e72e933e78b9bd5955e 336 Gene3D G3DSA:3.40.190.170 37 226 4.7E-6 T 13-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily CDG55_13325 6c77f5a03ab4a6482bd602c4f37f50e0 122 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 11 107 2.9E-25 T 13-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like CDG55_00835 03ff2965016e85ff2a4568ab6f91a3ec 551 Pfam PF01844 HNH endonuclease 491 535 1.4E-4 T 13-10-2018 IPR002711 HNH endonuclease GO:0003676|GO:0004519 CDG55_09225 df6f848f1fced63e9c3f90709be40499 1501 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 1154 1501 5.2E-42 T 13-10-2018 IPR007452 Translocation and assembly module TamB CDG55_09275 d59ac7958b4afd3f26773eda7c2fee17 143 Gene3D G3DSA:2.60.120.380 33 143 2.8E-26 T 13-10-2018 CDG55_11685 80d7155c60e6d191b3e497403bf6eaaa 405 Pfam PF13679 Methyltransferase domain 162 297 2.0E-32 T 13-10-2018 IPR025714 Methyltransferase domain CDG55_11685 80d7155c60e6d191b3e497403bf6eaaa 405 SUPERFAMILY SSF53335 175 313 2.81E-14 T 13-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CDG55_11685 80d7155c60e6d191b3e497403bf6eaaa 405 Gene3D G3DSA:3.40.50.150 149 279 1.8E-9 T 13-10-2018 CDG55_14295 bced8ab3d80277992f1ad3106e70dd53 132 Pfam PF03899 ATP synthase I chain 16 112 8.1E-22 T 13-10-2018 IPR005598 ATP synthase protein I CDG55_05950 0e5669c7a473f8b8b6dad6bf995720eb 356 Gene3D G3DSA:1.10.3720.10 111 345 1.4E-15 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_05950 0e5669c7a473f8b8b6dad6bf995720eb 356 SUPERFAMILY SSF161098 117 334 1.1E-12 T 13-10-2018 IPR035906 MetI-like superfamily CDG55_05950 0e5669c7a473f8b8b6dad6bf995720eb 356 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 140 348 3.1E-30 T 13-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 CDG55_05760 349bf17da8f9967c2d91a81620f01320 443 Pfam PF04434 SWIM zinc finger 61 83 1.6E-6 T 13-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 CDG55_08715 669b2102b118a46de05d039d520834f5 289 Pfam PF10977 Protein of unknown function (DUF2797) 47 284 8.6E-90 T 13-10-2018 IPR021246 Protein of unknown function DUF2797 CDG55_01695 dea4623b50d51e2fd13da04a73a5e531 181 Gene3D G3DSA:1.25.40.20 2 180 8.7E-16 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily CDG55_01695 dea4623b50d51e2fd13da04a73a5e531 181 SUPERFAMILY SSF48403 4 139 3.65E-11 T 13-10-2018 IPR036770 Ankyrin repeat-containing domain superfamily CDG55_07705 4132e1fd9ddf07734eb8531fe1b3cbe6 144 Pfam PF15571 Immunity protein 44 1 111 9.8E-7 T 13-10-2018 IPR029078 Immunity protein 44 CDG55_05150 555ee95f1e69acec8270435510a061d1 360 SUPERFAMILY SSF161070 40 356 3.01E-10 T 13-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 CDG55_11920 ef58097e19027efea84f40a870efdc35 331 Pfam PF11380 Stealth protein CR2, conserved region 2 43 151 3.5E-29 T 13-10-2018 IPR021520 Stealth protein CR2, conserved region 2 GO:0016772 CDG55_01965 f17f80c2e2445f3137289163481e0c48 115 Pfam PF01710 Transposase 1 114 3.8E-22 T 13-10-2018 IPR002622 Transposase, Synechocystis PCC 6803 CDG55_01965 f17f80c2e2445f3137289163481e0c48 115 SUPERFAMILY SSF46689 3 92 6.27E-8 T 13-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 CDG55_01880 7843cc657c6777847b717feb284aa4a0 255 Pfam PF16956 Putative general bacterial porin 1 157 1.2E-18 T 13-10-2018 IPR031593 Putative general bacterial porin CDG55_04860 193663b1550b9304178978c583e5bb4c 64 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 11 57 7.2E-10 T 13-10-2018 IPR010260 DNA-binding transcriptional activator AlpA CDG55_14740 1dab9f4375a3e32fbac782ee9ad67e83 334 Pfam PF00953 Glycosyl transferase family 4 74 223 8.6E-26 T 13-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 CDG55_06955 feef2c862dc4c451966ab5cc29c82f66 138 Pfam PF06271 RDD family 7 131 1.1E-27 T 13-10-2018 IPR010432 RDD CDG55_08320 34ef88c21ddea9f0e6810bb858621236 525 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 503 2.9E-175 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CDG55_08320 34ef88c21ddea9f0e6810bb858621236 525 PIRSF PIRSF006446 2 330 1.2E-115 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CDG55_08320 34ef88c21ddea9f0e6810bb858621236 525 PIRSF PIRSF006446 355 524 2.3E-31 T 13-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 CDG55_14030 5273a592bf7a5c7b200152f5726f3361 214 Pfam PF03458 UPF0126 domain 5 79 1.2E-19 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 CDG55_14030 5273a592bf7a5c7b200152f5726f3361 214 Pfam PF03458 UPF0126 domain 91 163 1.8E-19 T 13-10-2018 IPR005115 Uncharacterised domain UPF0126 CDG55_12695 c377f17b77f74df755e0125b6bde37ce 124 Pfam PF13511 Domain of unknown function (DUF4124) 17 58 2.3E-9 T 13-10-2018 IPR025392 Domain of unknown function DUF4124 CDG55_11035 4240132c7b0ca7b28287f8e9b33af579 14 TIGRFAM TIGR01053 LSD1: zinc finger domain, LSD1 subclass 1 13 7.6E-4 T 13-10-2018 IPR005735 Zinc finger, LSD1-type CDG55_14665 ae1c5819440ee448f462e77aac7a6a78 47 Pfam PF07295 Zinc-ribbon containing domain 3 43 2.4E-7 T 13-10-2018 IPR009912 Zinc-ribbon containing domain CDG55_11915 0f7ac850270143011bb1aae39adbdd9b 256 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 4 182 4.2E-23 T 13-10-2018 IPR002654 Glycosyl transferase, family 25 CDG55_01195 108c52812f15f7f30b65f23493b46ad6 185 Pfam PF09335 SNARE associated Golgi protein 45 171 2.4E-21 T 13-10-2018 IPR032816 SNARE associated Golgi protein CDG55_12065 fd082a709de335c152807b76400181c7 232 Pfam PF09976 Tetratricopeptide repeat-like domain 13 212 9.1E-43 T 13-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 CDG55_12065 fd082a709de335c152807b76400181c7 232 Gene3D G3DSA:1.25.40.10 68 200 3.4E-7 T 13-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 CDG55_12065 fd082a709de335c152807b76400181c7 232 PIRSF PIRSF006170 1 217 2.5E-64 T 13-10-2018 IPR026039 Uncharacterised protein family UPF0070 CDG55_08160 4ea2df7b9742074d5939e550319c13c6 117 Pfam PF06305 Lipopolysaccharide assembly protein A domain 22 87 7.6E-17 T 13-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 CDG55_08295 ac892b5ef755fee724ef7247df1c64f7 225 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 219 6.2E-31 T 13-10-2018 IPR018635 Uncharacterised protein family UPF0319 CDG55_01845 307674370e290913c24816d96b1b2660 191 Pfam PF01169 Uncharacterized protein family UPF0016 6 80 2.5E-19 T 13-10-2018 IPR001727 Gdt1 family CDG55_01845 307674370e290913c24816d96b1b2660 191 Pfam PF01169 Uncharacterized protein family UPF0016 107 181 9.5E-24 T 13-10-2018 IPR001727 Gdt1 family CDG55_14185 1d8e119b792fb8908f46b50b7753400f 110 Pfam PF04341 Protein of unknown function, DUF485 11 96 1.7E-31 T 13-10-2018 IPR007436 Protein of unknown function DUF485 CDG55_03365 97d5826e40c3d7563bd256a46fce1e66 260 Pfam PF05742 Transport and Golgi organisation 2 1 232 1.1E-55 T 13-10-2018 IPR008551 Transport and Golgi organisation protein 2 CDG55_07740 487e71fcbc21d6a2404e73db98c06510 245 Pfam PF09992 Phosphodiester glycosidase 73 220 1.6E-17 T 13-10-2018 IPR018711 Phosphodiester glycosidase CDG55_12480 63177c9ff94b710b9b62cebbf02bd7b4 275 Gene3D G3DSA:3.30.565.40 44 158 3.4E-9 T 13-10-2018 CDG55_11355 ca16a1bcd9dd56db8e0c90ad279d0744 398 Pfam PF05992 SbmA/BacA-like family 84 396 9.6E-156 T 13-10-2018 IPR009248 SbmA/BacA-like GO:0015833|GO:0016021|GO:1904680 CDG55_07445 c696e23957ade42edeab9e5b9508ceee 258 Pfam PF01435 Peptidase family M48 75 245 5.4E-34 T 13-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 CDG55_03640 8cefa4141c743a08ec89758995d12731 303 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 1 281 5.0E-61 T 13-10-2018 IPR021134 Bestrophin/UPF0187 Reactome: R-HSA-2672351 CDG55_09750 968008fb3566c6d01f60ee86bd39f8fb 200 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 3 143 5.7E-11 T 13-10-2018 IPR007296 Domain of unknown function DUF403 CDG55_02935 607aaaa406ee77d999d8f15817d91ca0 89 Pfam PF04024 PspC domain 6 62 3.9E-21 T 13-10-2018 IPR007168 Phage shock protein, PspC, N-terminal