locus-tag class description CDG61_00005 PF00239 Resolvase, N terminal domain CDG61_00005 PF02796 Helix-turn-helix domain of resolvase CDG61_00020 PF05973 Phage derived protein Gp49-like (DUF891) CDG61_00030 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CDG61_00035 PF01636 Phosphotransferase enzyme family CDG61_00040 PF00809 Pterin binding enzyme CDG61_00075 PF07690 Major Facilitator Superfamily CDG61_00080 PF02909 Tetracyclin repressor-like, C-terminal domain CDG61_00080 PF00440 Bacterial regulatory proteins, tetR family CDG61_00100 PF01636 Phosphotransferase enzyme family CDG61_00105 PF03389 MobA/MobL family CDG61_00120 PF00582 Universal stress protein family CDG61_00125 PF01740 STAS domain CDG61_00125 PF00916 Sulfate permease family CDG61_00135 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CDG61_00150 PF00893 Small Multidrug Resistance protein CDG61_00165 PF03389 MobA/MobL family CDG61_00190 PF05713 Bacterial mobilisation protein (MobC) CDG61_00195 PF03432 Relaxase/Mobilisation nuclease domain CDG61_00235 PF03743 Bacterial conjugation TrbI-like protein CDG61_00240 PF00437 Type II/IV secretion system protein CDG61_00255 PF01464 Transglycosylase SLT domain CDG61_00255 PF01551 Peptidase family M23 CDG61_00255 PF10145 Phage-related minor tail protein CDG61_00270 PF01551 Peptidase family M23 CDG61_00270 PF01464 Transglycosylase SLT domain CDG61_00270 PF10145 Phage-related minor tail protein CDG61_00295 PF00565 Staphylococcal nuclease homologue CDG61_00310 PF00239 Resolvase, N terminal domain CDG61_00310 PF02796 Helix-turn-helix domain of resolvase CDG61_00325 PF00753 Metallo-beta-lactamase superfamily CDG61_00330 PF13936 Helix-turn-helix domain CDG61_00330 PF00665 Integrase core domain CDG61_00335 PF01636 Phosphotransferase enzyme family CDG61_00360 PF01443 Viral (Superfamily 1) RNA helicase CDG61_00360 PF03389 MobA/MobL family CDG61_00360 PF17841 BID domain of Bartonella effector protein (Bep) CDG61_00430 PF13614 AAA domain CDG61_00440 PF11638 DnaA N-terminal domain CDG61_00440 PF08299 Bacterial dnaA protein helix-turn-helix CDG61_00440 PF00308 Bacterial dnaA protein CDG61_00445 PF00712 DNA polymerase III beta subunit, N-terminal domain CDG61_00445 PF02767 DNA polymerase III beta subunit, central domain CDG61_00445 PF02768 DNA polymerase III beta subunit, C-terminal domain CDG61_00450 PF02463 RecF/RecN/SMC N terminal domain CDG61_00455 PF00204 DNA gyrase B CDG61_00455 PF00986 DNA gyrase B subunit, carboxyl terminus CDG61_00455 PF01751 Toprim domain CDG61_00455 PF18053 DNA gyrase B subunit insert domain CDG61_00455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_00465 PF12848 ABC transporter CDG61_00465 PF00005 ABC transporter CDG61_00490 PF01521 Iron-sulphur cluster biosynthesis CDG61_00495 PF00561 alpha/beta hydrolase fold CDG61_00500 PF03702 Anhydro-N-acetylmuramic acid kinase CDG61_00505 PF00579 tRNA synthetases class I (W and Y) CDG61_00510 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDG61_00515 PF00005 ABC transporter CDG61_00520 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_00525 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CDG61_00535 PF00149 Calcineurin-like phosphoesterase CDG61_00535 PF02872 5'-nucleotidase, C-terminal domain CDG61_00580 PF07690 Major Facilitator Superfamily CDG61_00595 PF00171 Aldehyde dehydrogenase family CDG61_00600 PF06940 Domain of unknown function (DUF1287) CDG61_00605 PF00209 Sodium:neurotransmitter symporter family CDG61_00615 PF01029 NusB family CDG61_00615 PF01189 16S rRNA methyltransferase RsmB/F CDG61_00620 PF02911 Formyl transferase, C-terminal domain CDG61_00620 PF00551 Formyl transferase CDG61_00625 PF13018 Extended Signal Peptide of Type V secretion system CDG61_00625 PF05658 Head domain of trimeric autotransporter adhesin CDG61_00625 PF13018 Extended Signal Peptide of Type V secretion system CDG61_00625 PF05662 Coiled stalk of trimeric autotransporter adhesin CDG61_00625 PF05662 Coiled stalk of trimeric autotransporter adhesin CDG61_00625 PF03895 YadA-like membrane anchor domain CDG61_00625 PF05658 Head domain of trimeric autotransporter adhesin CDG61_00625 PF03895 YadA-like membrane anchor domain CDG61_00630 PF01389 OmpA-like transmembrane domain CDG61_00630 PF00691 OmpA family CDG61_00635 PF00920 Dehydratase family CDG61_00650 PF00120 Glutamine synthetase, catalytic domain CDG61_00660 PF03466 LysR substrate binding domain CDG61_00660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_00665 PF00860 Permease family CDG61_00670 PF00311 Phosphoenolpyruvate carboxylase CDG61_00675 PF03725 3' exoribonuclease family, domain 2 CDG61_00675 PF01138 3' exoribonuclease family, domain 1 CDG61_00680 PF05506 Domain of unknown function (DUF756) CDG61_00680 PF04185 Phosphoesterase family CDG61_00690 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CDG61_00690 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CDG61_00695 PF01510 N-acetylmuramoyl-L-alanine amidase CDG61_00700 PF03023 Lipid II flippase MurJ CDG61_00705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG61_00705 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDG61_00710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG61_00710 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CDG61_00725 PF08240 Alcohol dehydrogenase GroES-like domain CDG61_00725 PF00107 Zinc-binding dehydrogenase CDG61_00730 PF03352 Methyladenine glycosylase CDG61_00745 PF00633 Helix-hairpin-helix motif CDG61_00745 PF14815 NUDIX domain CDG61_00745 PF00730 HhH-GPD superfamily base excision DNA repair protein CDG61_00750 PF01230 HIT domain CDG61_00760 PF07043 Protein of unknown function (DUF1328) CDG61_00765 PF03692 Putative zinc- or iron-chelating domain CDG61_00770 PF04463 Protein of unknown function (DUF523) CDG61_00775 PF08448 PAS fold CDG61_00775 PF08447 PAS fold CDG61_00775 PF00990 Diguanylate cyclase, GGDEF domain CDG61_00775 PF00563 EAL domain CDG61_00780 PF16193 AAA C-terminal domain CDG61_00780 PF12002 MgsA AAA+ ATPase C terminal CDG61_00780 PF00004 ATPase family associated with various cellular activities (AAA) CDG61_00785 PF01259 SAICAR synthetase CDG61_00795 PF00701 Dihydrodipicolinate synthetase family CDG61_00800 PF07690 Major Facilitator Superfamily CDG61_00805 PF00857 Isochorismatase family CDG61_00810 PF01758 Sodium Bile acid symporter family CDG61_00815 PF17941 Polyphosphate kinase C-terminal domain 1 CDG61_00815 PF13090 Polyphosphate kinase C-terminal domain 2 CDG61_00815 PF13089 Polyphosphate kinase N-terminal domain CDG61_00815 PF02503 Polyphosphate kinase middle domain CDG61_00845 PF02580 D-Tyr-tRNA(Tyr) deacylase CDG61_00850 PF00199 Catalase CDG61_00850 PF06628 Catalase-related immune-responsive CDG61_00860 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CDG61_00860 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CDG61_00865 PF00581 Rhodanese-like domain CDG61_00870 PF02666 Phosphatidylserine decarboxylase CDG61_00875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_00875 PF00512 His Kinase A (phospho-acceptor) domain CDG61_00875 PF00989 PAS fold CDG61_00875 PF11808 Phosphate regulon sensor protein PhoR CDG61_00880 PF00072 Response regulator receiver domain CDG61_00880 PF00486 Transcriptional regulatory protein, C terminal CDG61_00890 PF00106 short chain dehydrogenase CDG61_00895 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CDG61_00915 PF09084 NMT1/THI5 like CDG61_00920 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_00925 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_00930 PF00005 ABC transporter CDG61_00940 PF00155 Aminotransferase class I and II CDG61_00950 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_00950 PF12833 Helix-turn-helix domain CDG61_00975 PF04286 Protein of unknown function (DUF445) CDG61_00985 PF01872 RibD C-terminal domain CDG61_00995 PF04262 Glutamate-cysteine ligase CDG61_01000 PF02600 Disulfide bond formation protein DsbB CDG61_01010 PF05728 Uncharacterised protein family (UPF0227) CDG61_01015 PF00204 DNA gyrase B CDG61_01015 PF00986 DNA gyrase B subunit, carboxyl terminus CDG61_01015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_01015 PF01751 Toprim domain CDG61_01040 PF00583 Acetyltransferase (GNAT) family CDG61_01070 PF17151 Periplasmic sensor domain CDG61_01070 PF00990 Diguanylate cyclase, GGDEF domain CDG61_01075 PF02525 Flavodoxin-like fold CDG61_01080 PF07859 alpha/beta hydrolase fold CDG61_01095 PF03372 Endonuclease/Exonuclease/phosphatase family CDG61_01100 PF00156 Phosphoribosyl transferase domain CDG61_01110 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CDG61_01110 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CDG61_01115 PF03033 Glycosyltransferase family 28 N-terminal domain CDG61_01115 PF04101 Glycosyltransferase family 28 C-terminal domain CDG61_01120 PF01225 Mur ligase family, catalytic domain CDG61_01120 PF02875 Mur ligase family, glutamate ligase domain CDG61_01120 PF08245 Mur ligase middle domain CDG61_01125 PF01820 D-ala D-ala ligase N-terminus CDG61_01125 PF07478 D-ala D-ala ligase C-terminus CDG61_01130 PF03799 Cell division protein FtsQ CDG61_01130 PF08478 POTRA domain, FtsQ-type CDG61_01135 PF02491 SHS2 domain inserted in FTSA CDG61_01140 PF12327 FtsZ family, C-terminal domain CDG61_01140 PF00091 Tubulin/FtsZ family, GTPase domain CDG61_01145 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CDG61_01160 PF00456 Transketolase, thiamine diphosphate binding domain CDG61_01160 PF17831 Pyruvate dehydrogenase E1 component middle domain CDG61_01165 PF02817 e3 binding domain CDG61_01165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDG61_01165 PF00364 Biotin-requiring enzyme CDG61_01170 PF01169 Uncharacterized protein family UPF0016 CDG61_01175 PF00258 Flavodoxin CDG61_01175 PF01613 Flavin reductase like domain CDG61_01180 PF03692 Putative zinc- or iron-chelating domain CDG61_01190 PF00478 IMP dehydrogenase / GMP reductase domain CDG61_01190 PF00571 CBS domain CDG61_01195 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG61_01195 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG61_01195 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG61_01195 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG61_01200 PF01243 Pyridoxamine 5'-phosphate oxidase CDG61_01200 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CDG61_01205 PF17768 RecJ OB domain CDG61_01205 PF02272 DHHA1 domain CDG61_01205 PF01368 DHH family CDG61_01230 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG61_01235 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CDG61_01240 PF04452 RNA methyltransferase CDG61_01245 PF00924 Mechanosensitive ion channel CDG61_01250 PF01757 Acyltransferase family CDG61_01255 PF05656 Protein of unknown function (DUF805) CDG61_01260 PF13193 AMP-binding enzyme C-terminal domain CDG61_01260 PF00501 AMP-binding enzyme CDG61_01260 PF16177 Acetyl-coenzyme A synthetase N-terminus CDG61_01265 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CDG61_01265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_01275 PF00296 Luciferase-like monooxygenase CDG61_01280 PF03358 NADPH-dependent FMN reductase CDG61_01285 PF00072 Response regulator receiver domain CDG61_01285 PF00196 Bacterial regulatory proteins, luxR family CDG61_01295 PF00512 His Kinase A (phospho-acceptor) domain CDG61_01295 PF09456 RcsC Alpha-Beta-Loop (ABL) CDG61_01295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_01295 PF00072 Response regulator receiver domain CDG61_01300 PF04341 Protein of unknown function, DUF485 CDG61_01305 PF00474 Sodium:solute symporter family CDG61_01315 PF02028 BCCT, betaine/carnitine/choline family transporter CDG61_01325 PF00990 Diguanylate cyclase, GGDEF domain CDG61_01335 PF00905 Penicillin binding protein transpeptidase domain CDG61_01345 PF17760 UvrA interaction domain CDG61_01345 PF17755 UvrA DNA-binding domain CDG61_01355 PF06942 GlpM protein CDG61_01370 PF03070 TENA/THI-4/PQQC family CDG61_01370 PF02581 Thiamine monophosphate synthase CDG61_01370 PF08543 Phosphomethylpyrimidine kinase CDG61_01380 PF07690 Major Facilitator Superfamily CDG61_01385 PF00436 Single-strand binding protein family CDG61_01405 PF00578 AhpC/TSA family CDG61_01405 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDG61_01420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_01420 PF03466 LysR substrate binding domain CDG61_01425 PF00857 Isochorismatase family CDG61_01430 PF05726 Pirin C-terminal cupin domain CDG61_01430 PF02678 Pirin CDG61_01440 PF01593 Flavin containing amine oxidoreductase CDG61_01445 PF08241 Methyltransferase domain CDG61_01485 PF00436 Single-strand binding protein family CDG61_01540 PF13356 Arm DNA-binding domain CDG61_01540 PF00589 Phage integrase family CDG61_01550 PF02705 K+ potassium transporter CDG61_01565 PF00230 Major intrinsic protein CDG61_01570 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_01570 PF12833 Helix-turn-helix domain CDG61_01580 PF00977 Histidine biosynthesis protein CDG61_01585 PF01636 Phosphotransferase enzyme family CDG61_01590 PF00313 'Cold-shock' DNA-binding domain CDG61_01600 PF00977 Histidine biosynthesis protein CDG61_01615 PF00117 Glutamine amidotransferase class-I CDG61_01620 PF00475 Imidazoleglycerol-phosphate dehydratase CDG61_01670 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDG61_01670 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDG61_01675 PF00672 HAMP domain CDG61_01675 PF00512 His Kinase A (phospho-acceptor) domain CDG61_01675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_01680 PF00486 Transcriptional regulatory protein, C terminal CDG61_01680 PF00072 Response regulator receiver domain CDG61_01685 PF16921 Tex protein YqgF-like domain CDG61_01685 PF00575 S1 RNA binding domain CDG61_01685 PF09371 Tex-like protein N-terminal domain CDG61_01685 PF17674 HHH domain CDG61_01695 PF00106 short chain dehydrogenase CDG61_01700 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG61_01705 PF12848 ABC transporter CDG61_01705 PF00005 ABC transporter CDG61_01715 PF02321 Outer membrane efflux protein CDG61_01725 PF00873 AcrB/AcrD/AcrF family CDG61_01735 PF01545 Cation efflux family CDG61_01755 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG61_01780 PF01795 MraW methylase family CDG61_01785 PF04999 Cell division protein FtsL CDG61_01790 PF00905 Penicillin binding protein transpeptidase domain CDG61_01790 PF03717 Penicillin-binding Protein dimerisation domain CDG61_01795 PF08245 Mur ligase middle domain CDG61_01795 PF02875 Mur ligase family, glutamate ligase domain CDG61_01795 PF01225 Mur ligase family, catalytic domain CDG61_01800 PF08245 Mur ligase middle domain CDG61_01800 PF02875 Mur ligase family, glutamate ligase domain CDG61_01800 PF01225 Mur ligase family, catalytic domain CDG61_01805 PF00953 Glycosyl transferase family 4 CDG61_01810 PF13847 Methyltransferase domain CDG61_01815 PF00905 Penicillin binding protein transpeptidase domain CDG61_01815 PF17092 Penicillin-binding protein OB-like domain CDG61_01815 PF00912 Transglycosylase CDG61_01840 PF07660 Secretin and TonB N terminus short domain CDG61_01840 PF00263 Bacterial type II and III secretion system protein CDG61_01840 PF03958 Bacterial type II/III secretion system short domain CDG61_01840 PF11741 AMIN domain CDG61_01845 PF01202 Shikimate kinase CDG61_01850 PF01761 3-dehydroquinate synthase CDG61_01860 PF04898 Glutamate synthase central domain CDG61_01860 PF01645 Conserved region in glutamate synthase CDG61_01860 PF00310 Glutamine amidotransferases class-II CDG61_01860 PF01493 GXGXG motif CDG61_01865 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_01865 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDG61_01875 PF04011 LemA family CDG61_01880 PF04536 TPM domain CDG61_01890 PF05523 WxcM-like, C-terminal CDG61_01895 PF01370 NAD dependent epimerase/dehydratase family CDG61_01895 PF00551 Formyl transferase CDG61_01895 PF02911 Formyl transferase, C-terminal domain CDG61_01900 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDG61_01905 PF01943 Polysaccharide biosynthesis protein CDG61_01910 PF00535 Glycosyl transferase family 2 CDG61_01915 PF00535 Glycosyl transferase family 2 CDG61_01925 PF02397 Bacterial sugar transferase CDG61_01945 PF00114 Pilin (bacterial filament) CDG61_01945 PF07963 Prokaryotic N-terminal methylation motif CDG61_01950 PF00114 Pilin (bacterial filament) CDG61_01950 PF07963 Prokaryotic N-terminal methylation motif CDG61_01955 PF11846 Virulence factor membrane-bound polymerase, C-terminal CDG61_01955 PF15864 Protein glycosylation ligase CDG61_01955 PF04932 O-Antigen ligase CDG61_01960 PF00210 Ferritin-like domain CDG61_01965 PF04324 BFD-like [2Fe-2S] binding domain CDG61_01970 PF01042 Endoribonuclease L-PSP CDG61_01975 PF04607 Region found in RelA / SpoT proteins CDG61_01975 PF13291 ACT domain CDG61_01975 PF02824 TGS domain CDG61_01980 PF01192 RNA polymerase Rpb6 CDG61_01985 PF00625 Guanylate kinase CDG61_01990 PF02401 LytB protein CDG61_02020 PF07963 Prokaryotic N-terminal methylation motif CDG61_02020 PF00114 Pilin (bacterial filament) CDG61_02050 PF00114 Pilin (bacterial filament) CDG61_02050 PF07963 Prokaryotic N-terminal methylation motif CDG61_02060 PF00886 Ribosomal protein S16 CDG61_02065 PF05239 PRC-barrel domain CDG61_02065 PF01782 RimM N-terminal domain CDG61_02070 PF01746 tRNA (Guanine-1)-methyltransferase CDG61_02075 PF01245 Ribosomal protein L19 CDG61_02105 PF00114 Pilin (bacterial filament) CDG61_02105 PF07963 Prokaryotic N-terminal methylation motif CDG61_02110 PF00114 Pilin (bacterial filament) CDG61_02110 PF07963 Prokaryotic N-terminal methylation motif CDG61_02115 PF00561 alpha/beta hydrolase fold CDG61_02120 PF00561 alpha/beta hydrolase fold CDG61_02125 PF03280 Proteobacterial lipase chaperone protein CDG61_02130 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDG61_02130 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDG61_02130 PF09157 Pseudouridine synthase II TruB, C-terminal CDG61_02135 PF01925 Sulfite exporter TauE/SafE CDG61_02140 PF00892 EamA-like transporter family CDG61_02150 PF00892 EamA-like transporter family CDG61_02155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG61_02155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG61_02160 PF02913 FAD linked oxidases, C-terminal domain CDG61_02160 PF01565 FAD binding domain CDG61_02175 PF05726 Pirin C-terminal cupin domain CDG61_02175 PF02678 Pirin CDG61_02185 PF07690 Major Facilitator Superfamily CDG61_02190 PF12823 Domain of unknown function (DUF3817) CDG61_02195 PF12805 FUSC-like inner membrane protein yccS CDG61_02205 PF00080 Copper/zinc superoxide dismutase (SODC) CDG61_02210 PF01594 AI-2E family transporter CDG61_02215 PF13614 AAA domain CDG61_02230 PF01209 ubiE/COQ5 methyltransferase family CDG61_02250 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CDG61_02255 PF03109 ABC1 family CDG61_02265 PF01554 MatE CDG61_02280 PF06969 HemN C-terminal domain CDG61_02280 PF04055 Radical SAM superfamily CDG61_02295 PF02350 UDP-N-acetylglucosamine 2-epimerase CDG61_02325 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG61_02325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_02325 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_02325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_02335 PF08501 Shikimate dehydrogenase substrate binding domain CDG61_02335 PF01488 Shikimate / quinate 5-dehydrogenase CDG61_02335 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDG61_02345 PF01218 Coproporphyrinogen III oxidase CDG61_02355 PF04055 Radical SAM superfamily CDG61_02355 PF06969 HemN C-terminal domain CDG61_02360 PF00925 GTP cyclohydrolase II CDG61_02365 PF02779 Transketolase, pyrimidine binding domain CDG61_02365 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDG61_02365 PF02780 Transketolase, C-terminal domain CDG61_02370 PF00459 Inositol monophosphatase family CDG61_02375 PF00270 DEAD/DEAH box helicase CDG61_02375 PF00271 Helicase conserved C-terminal domain CDG61_02380 PF00005 ABC transporter CDG61_02385 PF02405 Permease MlaE CDG61_02390 PF02470 MlaD protein CDG61_02405 PF01544 CorA-like Mg2+ transporter protein CDG61_02410 PF03641 Possible lysine decarboxylase CDG61_02415 PF00293 NUDIX domain CDG61_02420 PF00156 Phosphoribosyl transferase domain CDG61_02435 PF00270 DEAD/DEAH box helicase CDG61_02435 PF00271 Helicase conserved C-terminal domain CDG61_02435 PF17191 RecG wedge domain CDG61_02445 PF01757 Acyltransferase family CDG61_02450 PF01553 Acyltransferase CDG61_02460 PF00375 Sodium:dicarboxylate symporter family CDG61_02470 PF01926 50S ribosome-binding GTPase CDG61_02475 PF02082 Transcriptional regulator CDG61_02480 PF00042 Globin CDG61_02480 PF00175 Oxidoreductase NAD-binding domain CDG61_02480 PF00970 Oxidoreductase FAD-binding domain CDG61_02500 PF13635 Domain of unknown function (DUF4143) CDG61_02500 PF13173 AAA domain CDG61_02505 PF05872 Bacterial protein of unknown function (DUF853) CDG61_02510 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG61_02520 PF00338 Ribosomal protein S10p/S20e CDG61_02525 PF00297 Ribosomal protein L3 CDG61_02530 PF00573 Ribosomal protein L4/L1 family CDG61_02535 PF00276 Ribosomal protein L23 CDG61_02540 PF03947 Ribosomal Proteins L2, C-terminal domain CDG61_02540 PF00181 Ribosomal Proteins L2, RNA binding domain CDG61_02545 PF00203 Ribosomal protein S19 CDG61_02550 PF00237 Ribosomal protein L22p/L17e CDG61_02555 PF07650 KH domain CDG61_02555 PF00189 Ribosomal protein S3, C-terminal domain CDG61_02560 PF00252 Ribosomal protein L16p/L10e CDG61_02565 PF00831 Ribosomal L29 protein CDG61_02570 PF00366 Ribosomal protein S17 CDG61_02575 PF00238 Ribosomal protein L14p/L23e CDG61_02580 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDG61_02580 PF00467 KOW motif CDG61_02585 PF00281 Ribosomal protein L5 CDG61_02585 PF00673 ribosomal L5P family C-terminus CDG61_02590 PF00253 Ribosomal protein S14p/S29e CDG61_02595 PF00410 Ribosomal protein S8 CDG61_02600 PF00347 Ribosomal protein L6 CDG61_02605 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDG61_02610 PF00333 Ribosomal protein S5, N-terminal domain CDG61_02610 PF03719 Ribosomal protein S5, C-terminal domain CDG61_02615 PF00327 Ribosomal protein L30p/L7e CDG61_02620 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDG61_02625 PF00344 SecY translocase CDG61_02630 PF00444 Ribosomal protein L36 CDG61_02635 PF00416 Ribosomal protein S13/S18 CDG61_02640 PF00411 Ribosomal protein S11 CDG61_02645 PF00163 Ribosomal protein S4/S9 N-terminal domain CDG61_02645 PF01479 S4 domain CDG61_02650 PF01000 RNA polymerase Rpb3/RpoA insert domain CDG61_02650 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDG61_02650 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDG61_02655 PF01196 Ribosomal protein L17 CDG61_02660 PF00743 Flavin-binding monooxygenase-like CDG61_02665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_02665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_02665 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_02670 PF03937 Flavinator of succinate dehydrogenase CDG61_02700 PF00892 EamA-like transporter family CDG61_02705 PF08502 LeuA allosteric (dimerisation) domain CDG61_02705 PF00682 HMGL-like CDG61_02710 PF00072 Response regulator receiver domain CDG61_02710 PF12833 Helix-turn-helix domain CDG61_02725 PF09526 Probable metal-binding protein (DUF2387) CDG61_02730 PF01432 Peptidase family M3 CDG61_02740 PF08461 Ribonuclease R winged-helix domain CDG61_02740 PF00575 S1 RNA binding domain CDG61_02740 PF00773 RNB domain CDG61_02740 PF17876 Cold shock domain CDG61_02740 PF08206 Ribonuclease B OB domain CDG61_02775 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDG61_02785 PF01625 Peptide methionine sulfoxide reductase CDG61_02800 PF00186 Dihydrofolate reductase CDG61_02805 PF00303 Thymidylate synthase CDG61_02825 PF01790 Prolipoprotein diacylglyceryl transferase CDG61_02840 PF00902 Sec-independent protein translocase protein (TatC) CDG61_02845 PF02416 mttA/Hcf106 family CDG61_02850 PF02416 mttA/Hcf106 family CDG61_02860 PF01725 Ham1 family CDG61_02865 PF00107 Zinc-binding dehydrogenase CDG61_02865 PF08240 Alcohol dehydrogenase GroES-like domain CDG61_02875 PF00561 alpha/beta hydrolase fold CDG61_02875 PF07021 Methionine biosynthesis protein MetW CDG61_02880 PF00561 alpha/beta hydrolase fold CDG61_02885 PF08502 LeuA allosteric (dimerisation) domain CDG61_02885 PF00682 HMGL-like CDG61_02890 PF01070 FMN-dependent dehydrogenase CDG61_02895 PF18331 PKHD-type hydroxylase C-terminal domain CDG61_02895 PF13640 2OG-Fe(II) oxygenase superfamily CDG61_02900 PF07715 TonB-dependent Receptor Plug Domain CDG61_02900 PF00593 TonB dependent receptor CDG61_02905 PF07715 TonB-dependent Receptor Plug Domain CDG61_02905 PF00593 TonB dependent receptor CDG61_02910 PF05697 Bacterial trigger factor protein (TF) CDG61_02910 PF05698 Bacterial trigger factor protein (TF) C-terminus CDG61_02910 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG61_02915 PF00574 Clp protease CDG61_02920 PF10431 C-terminal, D2-small domain, of ClpB protein CDG61_02920 PF07724 AAA domain (Cdc48 subfamily) CDG61_02920 PF06689 ClpX C4-type zinc finger CDG61_02935 PF05683 Fumarase C-terminus CDG61_02935 PF05681 Fumarate hydratase (Fumerase) CDG61_02940 PF13649 Methyltransferase domain CDG61_02950 PF01515 Phosphate acetyl/butaryl transferase CDG61_02950 PF07085 DRTGG domain CDG61_02955 PF00871 Acetokinase family CDG61_02965 PF00171 Aldehyde dehydrogenase family CDG61_02970 PF00561 alpha/beta hydrolase fold CDG61_03005 PF02130 Uncharacterized protein family UPF0054 CDG61_03010 PF02562 PhoH-like protein CDG61_03015 PF00919 Uncharacterized protein family UPF0004 CDG61_03015 PF04055 Radical SAM superfamily CDG61_03015 PF01938 TRAM domain CDG61_03020 PF01464 Transglycosylase SLT domain CDG61_03020 PF10145 Phage-related minor tail protein CDG61_03020 PF01551 Peptidase family M23 CDG61_03030 PF00056 lactate/malate dehydrogenase, NAD binding domain CDG61_03030 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDG61_03055 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CDG61_03060 PF01066 CDP-alcohol phosphatidyltransferase CDG61_03105 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_03105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG61_03105 PF00403 Heavy-metal-associated domain CDG61_03120 PF04273 Putative phosphatase (DUF442) CDG61_03120 PF00753 Metallo-beta-lactamase superfamily CDG61_03130 PF00085 Thioredoxin CDG61_03135 PF03061 Thioesterase superfamily CDG61_03150 PF04461 Protein of unknown function (DUF520) CDG61_03160 PF01266 FAD dependent oxidoreductase CDG61_03160 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CDG61_03175 PF04279 Intracellular septation protein A CDG61_03180 PF02811 PHP domain CDG61_03185 PF01062 Bestrophin, RFP-TM, chloride channel CDG61_03190 PF04002 RadC-like JAB domain CDG61_03195 PF04127 DNA / pantothenate metabolism flavoprotein CDG61_03195 PF02441 Flavoprotein CDG61_03200 PF07361 Cytochrome b562 CDG61_03205 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDG61_03205 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDG61_03215 PF02556 Preprotein translocase subunit SecB CDG61_03220 PF00462 Glutaredoxin CDG61_03230 PF03193 RsgA GTPase CDG61_03235 PF00929 Exonuclease CDG61_03255 PF02321 Outer membrane efflux protein CDG61_03260 PF00005 ABC transporter CDG61_03260 PF02687 FtsX-like permease family CDG61_03260 PF12704 MacB-like periplasmic core domain CDG61_03265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG61_03280 PF08264 Anticodon-binding domain of tRNA CDG61_03280 PF00133 tRNA synthetases class I (I, L, M and V) CDG61_03280 PF13603 Leucyl-tRNA synthetase, Domain 2 CDG61_03280 PF09334 tRNA synthetases class I (M) CDG61_03290 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDG61_03290 PF00205 Thiamine pyrophosphate enzyme, central domain CDG61_03290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDG61_03295 PF10369 Small subunit of acetolactate synthase CDG61_03300 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CDG61_03300 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CDG61_03315 PF13439 Glycosyltransferase Family 4 CDG61_03315 PF00534 Glycosyl transferases group 1 CDG61_03320 PF01569 PAP2 superfamily CDG61_03325 PF04384 Iron-sulphur cluster assembly CDG61_03330 PF00334 Nucleoside diphosphate kinase CDG61_03335 PF04055 Radical SAM superfamily CDG61_03350 PF04551 GcpE protein CDG61_03355 PF13393 Histidyl-tRNA synthetase CDG61_03355 PF03129 Anticodon binding domain CDG61_03365 PF13360 PQQ-like domain CDG61_03365 PF01011 PQQ enzyme repeat CDG61_03370 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDG61_03370 PF01926 50S ribosome-binding GTPase CDG61_03380 PF03819 MazG nucleotide pyrophosphohydrolase domain CDG61_03390 PF12626 Polymerase A arginine-rich C-terminus CDG61_03390 PF01743 Poly A polymerase head domain CDG61_03390 PF12627 Probable RNA and SrmB- binding site of polymerase A CDG61_03395 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CDG61_03400 PF02548 Ketopantoate hydroxymethyltransferase CDG61_03405 PF02569 Pantoate-beta-alanine ligase CDG61_03410 PF03668 P-loop ATPase protein family CDG61_03415 PF00381 PTS HPr component phosphorylation site CDG61_03420 PF04751 Protein of unknown function (DUF615) CDG61_03425 PF13193 AMP-binding enzyme C-terminal domain CDG61_03425 PF00501 AMP-binding enzyme CDG61_03430 PF12833 Helix-turn-helix domain CDG61_03430 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_03435 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal CDG61_03435 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal CDG61_03440 PF01565 FAD binding domain CDG61_03440 PF04030 D-arabinono-1,4-lactone oxidase CDG61_03450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDG61_03450 PF03129 Anticodon binding domain CDG61_03450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG61_03450 PF02824 TGS domain CDG61_03455 PF05198 Translation initiation factor IF-3, N-terminal domain CDG61_03455 PF00707 Translation initiation factor IF-3, C-terminal domain CDG61_03465 PF00043 Glutathione S-transferase, C-terminal domain CDG61_03465 PF02798 Glutathione S-transferase, N-terminal domain CDG61_03475 PF09335 SNARE associated Golgi protein CDG61_03490 PF01632 Ribosomal protein L35 CDG61_03495 PF00453 Ribosomal protein L20 CDG61_03520 PF01409 tRNA synthetases class II core domain (F) CDG61_03520 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDG61_03525 PF03484 tRNA synthetase B5 domain CDG61_03525 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDG61_03525 PF01588 Putative tRNA binding domain CDG61_03525 PF03483 B3/4 domain CDG61_03525 PF03147 Ferredoxin-fold anticodon binding domain CDG61_03530 PF00216 Bacterial DNA-binding protein CDG61_03540 PF07497 Rho termination factor, RNA-binding domain CDG61_03540 PF07498 Rho termination factor, N-terminal domain CDG61_03540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG61_03545 PF00085 Thioredoxin CDG61_03550 PF02541 Ppx/GppA phosphatase family CDG61_03555 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDG61_03560 PF01171 PP-loop family CDG61_03560 PF09179 TilS substrate binding domain CDG61_03560 PF11734 TilS substrate C-terminal domain CDG61_03565 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDG61_03565 PF03807 NADP oxidoreductase coenzyme F420-dependent CDG61_03570 PF02325 YGGT family CDG61_03580 PF01367 5'-3' exonuclease, C-terminal SAM fold CDG61_03580 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDG61_03580 PF00476 DNA polymerase family A CDG61_03580 PF01612 3'-5' exonuclease CDG61_03590 PF00924 Mechanosensitive ion channel CDG61_03590 PF12795 Mechanosensitive ion channel porin domain CDG61_03590 PF12794 Mechanosensitive ion channel inner membrane domain 1 CDG61_03600 PF00437 Type II/IV secretion system protein CDG61_03610 PF02566 OsmC-like protein CDG61_03620 PF00795 Carbon-nitrogen hydrolase CDG61_03695 PF04386 Stringent starvation protein B CDG61_03700 PF02798 Glutathione S-transferase, N-terminal domain CDG61_03700 PF00043 Glutathione S-transferase, C-terminal domain CDG61_03705 PF00380 Ribosomal protein S9/S16 CDG61_03710 PF00572 Ribosomal protein L13 CDG61_03715 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CDG61_03720 PF00398 Ribosomal RNA adenine dimethylase CDG61_03725 PF00149 Calcineurin-like phosphoesterase CDG61_03755 PF16360 GTP-binding GTPase Middle Region CDG61_03755 PF01926 50S ribosome-binding GTPase CDG61_03755 PF13167 GTP-binding GTPase N-terminal CDG61_03765 PF13091 PLD-like domain CDG61_03770 PF10518 TAT (twin-arginine translocation) pathway signal sequence CDG61_03770 PF00149 Calcineurin-like phosphoesterase CDG61_03785 PF00083 Sugar (and other) transporter CDG61_03785 PF07690 Major Facilitator Superfamily CDG61_03790 PF03006 Haemolysin-III related CDG61_03800 PF13673 Acetyltransferase (GNAT) domain CDG61_03820 PF01037 Lrp/AsnC ligand binding domain CDG61_03825 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDG61_03825 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDG61_03825 PF00378 Enoyl-CoA hydratase/isomerase CDG61_03830 PF02803 Thiolase, C-terminal domain CDG61_03830 PF00108 Thiolase, N-terminal domain CDG61_03835 PF02311 AraC-like ligand binding domain CDG61_03835 PF12833 Helix-turn-helix domain CDG61_03840 PF02515 CoA-transferase family III CDG61_03845 PF04966 Carbohydrate-selective porin, OprB family CDG61_03850 PF01011 PQQ enzyme repeat CDG61_03855 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDG61_03855 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDG61_03865 PF01113 Dihydrodipicolinate reductase, N-terminus CDG61_03865 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain CDG61_03870 PF00893 Small Multidrug Resistance protein CDG61_03885 PF02803 Thiolase, C-terminal domain CDG61_03885 PF00108 Thiolase, N-terminal domain CDG61_03895 PF00691 OmpA family CDG61_03895 PF13505 Outer membrane protein beta-barrel domain CDG61_03905 PF00293 NUDIX domain CDG61_03910 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_03915 PF00814 Glycoprotease family CDG61_03920 PF02673 Bacitracin resistance protein BacA CDG61_03925 PF04445 Putative SAM-dependent methyltransferase CDG61_03935 PF00756 Putative esterase CDG61_03940 PF05987 Bacterial protein of unknown function (DUF898) CDG61_03950 PF00834 Ribulose-phosphate 3 epimerase family CDG61_03960 PF07732 Multicopper oxidase CDG61_03960 PF00394 Multicopper oxidase CDG61_03960 PF07731 Multicopper oxidase CDG61_03975 PF00893 Small Multidrug Resistance protein CDG61_03980 PF00893 Small Multidrug Resistance protein CDG61_03985 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDG61_03985 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDG61_04000 PF02581 Thiamine monophosphate synthase CDG61_04000 PF03070 TENA/THI-4/PQQC family CDG61_04000 PF08543 Phosphomethylpyrimidine kinase CDG61_04005 PF13419 Haloacid dehalogenase-like hydrolase CDG61_04010 PF01037 Lrp/AsnC ligand binding domain CDG61_04015 PF01266 FAD dependent oxidoreductase CDG61_04020 PF01168 Alanine racemase, N-terminal domain CDG61_04020 PF00842 Alanine racemase, C-terminal domain CDG61_04025 PF01042 Endoribonuclease L-PSP CDG61_04030 PF00324 Amino acid permease CDG61_04035 PF01757 Acyltransferase family CDG61_04040 PF00701 Dihydrodipicolinate synthetase family CDG61_04050 PF00109 Beta-ketoacyl synthase, N-terminal domain CDG61_04050 PF02801 Beta-ketoacyl synthase, C-terminal domain CDG61_04060 PF00164 Ribosomal protein S12/S23 CDG61_04065 PF00177 Ribosomal protein S7p/S5e CDG61_04070 PF14492 Elongation Factor G, domain II CDG61_04070 PF00679 Elongation factor G C-terminus CDG61_04070 PF00009 Elongation factor Tu GTP binding domain CDG61_04070 PF03144 Elongation factor Tu domain 2 CDG61_04070 PF03764 Elongation factor G, domain IV CDG61_04075 PF03144 Elongation factor Tu domain 2 CDG61_04075 PF00009 Elongation factor Tu GTP binding domain CDG61_04075 PF03143 Elongation factor Tu C-terminal domain CDG61_04085 PF00583 Acetyltransferase (GNAT) family CDG61_04090 PF04376 Arginine-tRNA-protein transferase, N terminus CDG61_04090 PF04377 Arginine-tRNA-protein transferase, C terminus CDG61_04095 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CDG61_04100 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_04105 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CDG61_04105 PF01580 FtsK/SpoIIIE family CDG61_04105 PF09397 Ftsk gamma domain CDG61_04105 PF17854 FtsK alpha domain CDG61_04120 PF03776 Septum formation topological specificity factor MinE CDG61_04125 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CDG61_04130 PF03775 Septum formation inhibitor MinC, C-terminal domain CDG61_04140 PF01553 Acyltransferase CDG61_04145 PF13488 Glycine zipper CDG61_04145 PF00691 OmpA family CDG61_04150 PF00580 UvrD/REP helicase N-terminal domain CDG61_04150 PF13361 UvrD-like helicase C-terminal domain CDG61_04155 PF00692 dUTPase CDG61_04160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG61_04160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG61_04160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG61_04160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG61_04165 PF00696 Amino acid kinase family CDG61_04175 PF13230 Glutamine amidotransferases class-II CDG61_04180 PF01814 Hemerythrin HHE cation binding domain CDG61_04190 PF03658 RnfH family Ubiquitin CDG61_04195 PF04355 SmpA / OmlA family CDG61_04200 PF01475 Ferric uptake regulator family CDG61_04205 PF00437 Type II/IV secretion system protein CDG61_04210 PF00437 Type II/IV secretion system protein CDG61_04215 PF01168 Alanine racemase, N-terminal domain CDG61_04240 PF00149 Calcineurin-like phosphoesterase CDG61_04240 PF12320 Type 5 capsule protein repressor C-terminal domain CDG61_04275 PF00849 RNA pseudouridylate synthase CDG61_04280 PF00583 Acetyltransferase (GNAT) family CDG61_04295 PF04343 Protein of unknown function, DUF488 CDG61_04300 PF08274 PhnA Zinc-Ribbon CDG61_04300 PF03831 PhnA domain CDG61_04310 PF07411 Domain of unknown function (DUF1508) CDG61_04335 PF06674 Protein of unknown function (DUF1176) CDG61_04340 PF01207 Dihydrouridine synthase (Dus) CDG61_04355 PF02881 SRP54-type protein, helical bundle domain CDG61_04355 PF02978 Signal peptide binding domain CDG61_04355 PF00448 SRP54-type protein, GTPase domain CDG61_04370 PF03309 Type III pantothenate kinase CDG61_04380 PF01925 Sulfite exporter TauE/SafE CDG61_04390 PF02463 RecF/RecN/SMC N terminal domain CDG61_04390 PF06470 SMC proteins Flexible Hinge Domain CDG61_04400 PF01653 NAD-dependent DNA ligase adenylation domain CDG61_04400 PF03120 NAD-dependent DNA ligase OB-fold domain CDG61_04400 PF12826 Helix-hairpin-helix motif CDG61_04400 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDG61_04400 PF00533 BRCA1 C Terminus (BRCT) domain CDG61_04405 PF00593 TonB dependent receptor CDG61_04405 PF07715 TonB-dependent Receptor Plug Domain CDG61_04425 PF00210 Ferritin-like domain CDG61_04430 PF00578 AhpC/TSA family CDG61_04435 PF00561 alpha/beta hydrolase fold CDG61_04440 PF04055 Radical SAM superfamily CDG61_04440 PF06968 Biotin and Thiamin Synthesis associated domain CDG61_04440 PF00202 Aminotransferase class-III CDG61_04445 PF00155 Aminotransferase class I and II CDG61_04470 PF00849 RNA pseudouridylate synthase CDG61_04470 PF01479 S4 domain CDG61_04475 PF04079 Segregation and condensation complex subunit ScpB CDG61_04480 PF02616 Segregation and condensation protein ScpA CDG61_04495 PF01300 Telomere recombination CDG61_04500 PF04315 Elongation factor P hydroxylase CDG61_04505 PF02620 Large ribosomal RNA subunit accumulation protein YceD CDG61_04510 PF01783 Ribosomal L32p protein family CDG61_04515 PF00698 Acyl transferase domain CDG61_04525 PF00550 Phosphopantetheine attachment site CDG61_04530 PF01476 LysM domain CDG61_04530 PF04972 BON domain CDG61_04535 PF17803 Bacterial cadherin-like domain CDG61_04635 PF00268 Ribonucleotide reductase, small chain CDG61_04645 PF03477 ATP cone domain CDG61_04645 PF00317 Ribonucleotide reductase, all-alpha domain CDG61_04645 PF02867 Ribonucleotide reductase, barrel domain CDG61_04650 PF00072 Response regulator receiver domain CDG61_04650 PF00486 Transcriptional regulatory protein, C terminal CDG61_04655 PF00512 His Kinase A (phospho-acceptor) domain CDG61_04655 PF00672 HAMP domain CDG61_04655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_04660 PF00474 Sodium:solute symporter family CDG61_04665 PF01145 SPFH domain / Band 7 family CDG61_04675 PF01734 Patatin-like phospholipase CDG61_04695 PF00884 Sulfatase CDG61_04695 PF08019 Phosphoethanolamine transferase EptA/EptB CDG61_04700 PF00486 Transcriptional regulatory protein, C terminal CDG61_04700 PF00072 Response regulator receiver domain CDG61_04705 PF08521 Two-component sensor kinase N-terminal CDG61_04705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_04705 PF00512 His Kinase A (phospho-acceptor) domain CDG61_04720 PF00909 Ammonium Transporter Family CDG61_04730 PF00005 ABC transporter CDG61_04735 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_04740 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_04745 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDG61_04755 PF04480 Protein of unknown function (DUF559) CDG61_04765 PF00133 tRNA synthetases class I (I, L, M and V) CDG61_04765 PF08264 Anticodon-binding domain of tRNA CDG61_04765 PF10458 Valyl tRNA synthetase tRNA binding arm CDG61_04785 PF01906 Putative heavy-metal-binding CDG61_04790 PF01906 Putative heavy-metal-binding CDG61_04795 PF02321 Outer membrane efflux protein CDG61_04800 PF00873 AcrB/AcrD/AcrF family CDG61_04805 PF00529 HlyD membrane-fusion protein of T1SS CDG61_04805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG61_04810 PF01569 PAP2 superfamily CDG61_04820 PF00348 Polyprenyl synthetase CDG61_04825 PF00829 Ribosomal prokaryotic L21 protein CDG61_04830 PF01016 Ribosomal L27 protein CDG61_04835 PF03548 Outer membrane lipoprotein carrier protein LolA CDG61_04845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG61_04845 PF02403 Seryl-tRNA synthetase N-terminal domain CDG61_04850 PF14824 Sirohaem biosynthesis protein central CDG61_04850 PF10414 Sirohaem synthase dimerisation region CDG61_04850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDG61_04855 PF00588 SpoU rRNA Methylase family CDG61_04865 PF13520 Amino acid permease CDG61_04875 PF00465 Iron-containing alcohol dehydrogenase CDG61_04885 PF03099 Biotin/lipoate A/B protein ligase family CDG61_04895 PF04545 Sigma-70, region 4 CDG61_04895 PF03979 Sigma-70 factor, region 1.1 CDG61_04895 PF04546 Sigma-70, non-essential region CDG61_04895 PF04539 Sigma-70 region 3 CDG61_04895 PF00140 Sigma-70 factor, region 1.2 CDG61_04895 PF04542 Sigma-70 region 2 CDG61_04915 PF09335 SNARE associated Golgi protein CDG61_04930 PF01810 LysE type translocator CDG61_04935 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDG61_04950 PF02261 Aspartate decarboxylase CDG61_04955 PF01195 Peptidyl-tRNA hydrolase CDG61_04960 PF01386 Ribosomal L25p family CDG61_04965 PF14572 Phosphoribosyl synthetase-associated domain CDG61_04965 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDG61_04990 PF08544 GHMP kinases C terminal CDG61_04990 PF00288 GHMP kinases N terminal domain CDG61_04995 PF03550 Outer membrane lipoprotein LolB CDG61_05005 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CDG61_05005 PF01488 Shikimate / quinate 5-dehydrogenase CDG61_05005 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CDG61_05010 PF10410 DnaB-helicase binding domain of primase CDG61_05010 PF08278 DNA primase DnaG DnaB-binding CDG61_05010 PF08275 DNA primase catalytic core, N-terminal domain CDG61_05010 PF01807 CHC2 zinc finger CDG61_05015 PF13525 Outer membrane lipoprotein CDG61_05020 PF01479 S4 domain CDG61_05020 PF00849 RNA pseudouridylate synthase CDG61_05030 PF03358 NADPH-dependent FMN reductase CDG61_05050 PF01668 SmpB protein CDG61_05055 PF01467 Cytidylyltransferase-like CDG61_05060 PF00037 4Fe-4S binding domain CDG61_05095 PF02540 NAD synthase CDG61_05095 PF00795 Carbon-nitrogen hydrolase CDG61_05115 PF00106 short chain dehydrogenase CDG61_05125 PF00285 Citrate synthase, C-terminal domain CDG61_05130 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDG61_05135 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CDG61_05140 PF00890 FAD binding domain CDG61_05140 PF02910 Fumarate reductase flavoprotein C-term CDG61_05145 PF13085 2Fe-2S iron-sulfur cluster binding domain CDG61_05150 PF16870 2-oxoglutarate dehydrogenase C-terminal CDG61_05150 PF16078 2-oxoglutarate dehydrogenase N-terminus CDG61_05150 PF02779 Transketolase, pyrimidine binding domain CDG61_05150 PF00676 Dehydrogenase E1 component CDG61_05155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDG61_05155 PF00364 Biotin-requiring enzyme CDG61_05155 PF02817 e3 binding domain CDG61_05160 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_05160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG61_05165 PF00549 CoA-ligase CDG61_05165 PF08442 ATP-grasp domain CDG61_05170 PF00549 CoA-ligase CDG61_05170 PF02629 CoA binding domain CDG61_05175 PF01145 SPFH domain / Band 7 family CDG61_05175 PF15975 Flotillin CDG61_05180 PF07290 Protein of unknown function (DUF1449) CDG61_05185 PF00579 tRNA synthetases class I (W and Y) CDG61_05190 PF05661 Protein of unknown function (DUF808) CDG61_05195 PF04228 Putative neutral zinc metallopeptidase CDG61_05200 PF00999 Sodium/hydrogen exchanger family CDG61_05250 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDG61_05255 PF00582 Universal stress protein family CDG61_05265 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_05270 PF04072 Leucine carboxyl methyltransferase CDG61_05275 PF03449 Transcription elongation factor, N-terminal CDG61_05275 PF01272 Transcription elongation factor, GreA/GreB, C-term CDG61_05280 PF02142 MGS-like domain CDG61_05280 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDG61_05280 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG61_05285 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDG61_05285 PF00117 Glutamine amidotransferase class-I CDG61_05300 PF01985 CRS1 / YhbY (CRM) domain CDG61_05305 PF01728 FtsJ-like methyltransferase CDG61_05310 PF00004 ATPase family associated with various cellular activities (AAA) CDG61_05310 PF06480 FtsH Extracellular CDG61_05310 PF01434 Peptidase family M41 CDG61_05310 PF17862 AAA+ lid domain CDG61_05315 PF00809 Pterin binding enzyme CDG61_05355 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDG61_05355 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDG61_05375 PF00083 Sugar (and other) transporter CDG61_05380 PF08220 DeoR-like helix-turn-helix domain CDG61_05380 PF00455 DeoR C terminal sensor domain CDG61_05385 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDG61_05385 PF01266 FAD dependent oxidoreductase CDG61_05390 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CDG61_05390 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CDG61_05395 PF00781 Diacylglycerol kinase catalytic domain CDG61_05405 PF00166 Chaperonin 10 Kd subunit CDG61_05410 PF00118 TCP-1/cpn60 chaperonin family CDG61_05415 PF05658 Head domain of trimeric autotransporter adhesin CDG61_05415 PF03895 YadA-like membrane anchor domain CDG61_05415 PF05662 Coiled stalk of trimeric autotransporter adhesin CDG61_05415 PF13018 Extended Signal Peptide of Type V secretion system CDG61_05425 PF01219 Prokaryotic diacylglycerol kinase CDG61_05430 PF03009 Glycerophosphoryl diester phosphodiesterase family CDG61_05435 PF00873 AcrB/AcrD/AcrF family CDG61_05440 PF03448 MgtE intracellular N domain CDG61_05440 PF00571 CBS domain CDG61_05440 PF01769 Divalent cation transporter CDG61_05455 PF01435 Peptidase family M48 CDG61_05460 PF01551 Peptidase family M23 CDG61_05460 PF10145 Phage-related minor tail protein CDG61_05460 PF01464 Transglycosylase SLT domain CDG61_05465 PF01171 PP-loop family CDG61_05475 PF01464 Transglycosylase SLT domain CDG61_05475 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDG61_05480 PF01272 Transcription elongation factor, GreA/GreB, C-term CDG61_05480 PF03449 Transcription elongation factor, N-terminal CDG61_05500 PF03695 Uncharacterised protein family (UPF0149) CDG61_05505 PF00557 Metallopeptidase family M24 CDG61_05505 PF05195 Aminopeptidase P, N-terminal domain CDG61_05520 PF01494 FAD binding domain CDG61_05525 PF01494 FAD binding domain CDG61_05535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDG61_05540 PF02021 Uncharacterised protein family UPF0102 CDG61_05545 PF04972 BON domain CDG61_05550 PF00135 Carboxylesterase family CDG61_05555 PF09297 NADH pyrophosphatase zinc ribbon domain CDG61_05555 PF00293 NUDIX domain CDG61_05565 PF00929 Exonuclease CDG61_05570 PF01476 LysM domain CDG61_05570 PF01464 Transglycosylase SLT domain CDG61_05575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDG61_05580 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_05585 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_05585 PF12911 N-terminal TM domain of oligopeptide transport permease C CDG61_05590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDG61_05590 PF00005 ABC transporter CDG61_05595 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG61_05595 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_05610 PF12627 Probable RNA and SrmB- binding site of polymerase A CDG61_05610 PF01743 Poly A polymerase head domain CDG61_05615 PF00390 Malic enzyme, N-terminal domain CDG61_05615 PF03949 Malic enzyme, NAD binding domain CDG61_05615 PF01515 Phosphate acetyl/butaryl transferase CDG61_05620 PF13188 PAS domain CDG61_05620 PF00990 Diguanylate cyclase, GGDEF domain CDG61_05620 PF00563 EAL domain CDG61_05620 PF03707 Bacterial signalling protein N terminal repeat CDG61_05625 PF04452 RNA methyltransferase CDG61_05630 PF02219 Methylenetetrahydrofolate reductase CDG61_05635 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CDG61_05635 PF05221 S-adenosyl-L-homocysteine hydrolase CDG61_05685 PF00324 Amino acid permease CDG61_05695 PF00324 Amino acid permease CDG61_05700 PF07715 TonB-dependent Receptor Plug Domain CDG61_05710 PF00929 Exonuclease CDG61_05715 PF01979 Amidohydrolase family CDG61_05720 PF08448 PAS fold CDG61_05720 PF00990 Diguanylate cyclase, GGDEF domain CDG61_05725 PF00360 Phytochrome region CDG61_05725 PF00990 Diguanylate cyclase, GGDEF domain CDG61_05725 PF01590 GAF domain CDG61_05725 PF00563 EAL domain CDG61_05730 PF00764 Arginosuccinate synthase CDG61_05735 PF03466 LysR substrate binding domain CDG61_05735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_05740 PF00892 EamA-like transporter family CDG61_05745 PF02652 L-lactate permease CDG61_05750 PF00392 Bacterial regulatory proteins, gntR family CDG61_05750 PF07729 FCD domain CDG61_05755 PF01070 FMN-dependent dehydrogenase CDG61_05760 PF09330 D-lactate dehydrogenase, membrane binding CDG61_05760 PF01565 FAD binding domain CDG61_05770 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG61_05770 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_05815 PF02661 Fic/DOC family CDG61_05825 PF02384 N-6 DNA Methylase CDG61_05855 PF00176 SNF2 family N-terminal domain CDG61_05855 PF00271 Helicase conserved C-terminal domain CDG61_05855 PF12419 SNF2 Helicase protein CDG61_05890 PF00245 Alkaline phosphatase CDG61_05895 PF00245 Alkaline phosphatase CDG61_05905 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_05905 PF12833 Helix-turn-helix domain CDG61_05910 PF00072 Response regulator receiver domain CDG61_05910 PF00990 Diguanylate cyclase, GGDEF domain CDG61_05920 PF02333 Phytase CDG61_05925 PF01618 MotA/TolQ/ExbB proton channel family CDG61_05930 PF02472 Biopolymer transport protein ExbD/TolR CDG61_05950 PF00866 Ring hydroxylating beta subunit CDG61_05965 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDG61_05970 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG61_05970 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDG61_05975 PF07836 DmpG-like communication domain CDG61_05975 PF00682 HMGL-like CDG61_05985 PF00005 ABC transporter CDG61_05995 PF07690 Major Facilitator Superfamily CDG61_06000 PF13806 Rieske-like [2Fe-2S] domain CDG61_06000 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDG61_06000 PF04324 BFD-like [2Fe-2S] binding domain CDG61_06000 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDG61_06000 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDG61_06000 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_06005 PF18267 Rubredoxin NAD+ reductase C-terminal domain CDG61_06005 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_06005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CDG61_06005 PF04324 BFD-like [2Fe-2S] binding domain CDG61_06005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CDG61_06010 PF00384 Molybdopterin oxidoreductase CDG61_06010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDG61_06010 PF04324 BFD-like [2Fe-2S] binding domain CDG61_06010 PF01568 Molydopterin dinucleotide binding domain CDG61_06015 PF12804 MobA-like NTP transferase domain CDG61_06020 PF04055 Radical SAM superfamily CDG61_06020 PF06463 Molybdenum Cofactor Synthesis C CDG61_06030 PF02391 MoaE protein CDG61_06035 PF01967 MoaC family CDG61_06035 PF00994 Probable molybdopterin binding domain CDG61_06040 PF03454 MoeA C-terminal region (domain IV) CDG61_06040 PF00994 Probable molybdopterin binding domain CDG61_06040 PF03453 MoeA N-terminal region (domain I and II) CDG61_06050 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_06055 PF03459 TOBE domain CDG61_06055 PF00005 ABC transporter CDG61_06060 PF00596 Class II Aldolase and Adducin N-terminal domain CDG61_06070 PF18073 Rubredoxin metal binding domain CDG61_06075 PF01235 Sodium:alanine symporter family CDG61_06080 PF00324 Amino acid permease CDG61_06090 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDG61_06090 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDG61_06095 PF01678 Diaminopimelate epimerase CDG61_06100 PF00589 Phage integrase family CDG61_06100 PF02899 Phage integrase, N-terminal SAM-like domain CDG61_06110 PF13302 Acetyltransferase (GNAT) domain CDG61_06115 PF01012 Electron transfer flavoprotein domain CDG61_06120 PF01012 Electron transfer flavoprotein domain CDG61_06120 PF00766 Electron transfer flavoprotein FAD-binding domain CDG61_06135 PF03989 DNA gyrase C-terminal domain, beta-propeller CDG61_06135 PF00521 DNA gyrase/topoisomerase IV, subunit A CDG61_06150 PF13533 Biotin-lipoyl like CDG61_06160 PF00266 Aminotransferase class-V CDG61_06170 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDG61_06185 PF02687 FtsX-like permease family CDG61_06185 PF12704 MacB-like periplasmic core domain CDG61_06190 PF00005 ABC transporter CDG61_06195 PF13567 Domain of unknown function (DUF4131) CDG61_06195 PF03772 Competence protein CDG61_06195 PF00753 Metallo-beta-lactamase superfamily CDG61_06205 PF01343 Peptidase family S49 CDG61_06205 PF06965 Na+/H+ antiporter 1 CDG61_06215 PF00551 Formyl transferase CDG61_06220 PF00586 AIR synthase related protein, N-terminal domain CDG61_06220 PF02769 AIR synthase related protein, C-terminal domain CDG61_06225 PF01594 AI-2E family transporter CDG61_06230 PF08299 Bacterial dnaA protein helix-turn-helix CDG61_06230 PF00308 Bacterial dnaA protein CDG61_06230 PF11638 DnaA N-terminal domain CDG61_06260 PF00588 SpoU rRNA Methylase family CDG61_06260 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDG61_06265 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CDG61_06275 PF00691 OmpA family CDG61_06280 PF07676 WD40-like Beta Propeller Repeat CDG61_06280 PF04052 TolB amino-terminal domain CDG61_06290 PF02472 Biopolymer transport protein ExbD/TolR CDG61_06295 PF01618 MotA/TolQ/ExbB proton channel family CDG61_06300 PF03061 Thioesterase superfamily CDG61_06310 PF03466 LysR substrate binding domain CDG61_06310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_06315 PF00180 Isocitrate/isopropylmalate dehydrogenase CDG61_06320 PF02028 BCCT, betaine/carnitine/choline family transporter CDG61_06325 PF07859 alpha/beta hydrolase fold CDG61_06330 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDG61_06330 PF00355 Rieske [2Fe-2S] domain CDG61_06335 PF17864 RuvB AAA lid domain CDG61_06335 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDG61_06335 PF05491 RuvB C-terminal winged helix domain CDG61_06340 PF07499 RuvA, C-terminal domain CDG61_06340 PF01330 RuvA N terminal domain CDG61_06345 PF01966 HD domain CDG61_06350 PF00465 Iron-containing alcohol dehydrogenase CDG61_06355 PF00158 Sigma-54 interaction domain CDG61_06360 PF00171 Aldehyde dehydrogenase family CDG61_06365 PF00083 Sugar (and other) transporter CDG61_06370 PF02769 AIR synthase related protein, C-terminal domain CDG61_06370 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDG61_06370 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CDG61_06385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_06385 PF03466 LysR substrate binding domain CDG61_06390 PF01784 NIF3 (NGG1p interacting factor 3) CDG61_06395 PF00881 Nitroreductase family CDG61_06400 PF00378 Enoyl-CoA hydratase/isomerase CDG61_06405 PF01467 Cytidylyltransferase-like CDG61_06405 PF00293 NUDIX domain CDG61_06420 PF03466 LysR substrate binding domain CDG61_06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_06430 PF00578 AhpC/TSA family CDG61_06440 PF06508 Queuosine biosynthesis protein QueC CDG61_06445 PF04055 Radical SAM superfamily CDG61_06450 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CDG61_06450 PF14602 Hexapeptide repeat of succinyl-transferase CDG61_06450 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_06465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_06465 PF03466 LysR substrate binding domain CDG61_06470 PF00005 ABC transporter CDG61_06470 PF12857 TOBE-like domain CDG61_06475 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_06480 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_06495 PF01063 Amino-transferase class IV CDG61_06500 PF02618 YceG-like family CDG61_06505 PF02223 Thymidylate kinase CDG61_06515 PF12852 Cupin CDG61_06515 PF12833 Helix-turn-helix domain CDG61_06535 PF00890 FAD binding domain CDG61_06535 PF02910 Fumarate reductase flavoprotein C-term CDG61_06540 PF13180 PDZ domain CDG61_06550 PF00679 Elongation factor G C-terminus CDG61_06550 PF03144 Elongation factor Tu domain 2 CDG61_06550 PF00009 Elongation factor Tu GTP binding domain CDG61_06550 PF06421 GTP-binding protein LepA C-terminus CDG61_06555 PF10502 Signal peptidase, peptidase S26 CDG61_06565 PF14622 Ribonuclease-III-like CDG61_06565 PF00035 Double-stranded RNA binding motif CDG61_06570 PF07650 KH domain CDG61_06570 PF01926 50S ribosome-binding GTPase CDG61_06580 PF11967 Recombination protein O N terminal CDG61_06580 PF02565 Recombination protein O C terminal CDG61_06585 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CDG61_06590 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CDG61_06605 PF12697 Alpha/beta hydrolase family CDG61_06625 PF00892 EamA-like transporter family CDG61_06640 PF00990 Diguanylate cyclase, GGDEF domain CDG61_06640 PF00072 Response regulator receiver domain CDG61_06650 PF17757 UvrB interaction domain CDG61_06650 PF00271 Helicase conserved C-terminal domain CDG61_06650 PF04851 Type III restriction enzyme, res subunit CDG61_06650 PF12344 Ultra-violet resistance protein B CDG61_06650 PF02151 UvrB/uvrC motif CDG61_06655 PF08212 Lipocalin-like domain CDG61_06660 PF00892 EamA-like transporter family CDG61_06670 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDG61_06670 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDG61_06685 PF01638 HxlR-like helix-turn-helix CDG61_06690 PF01018 GTP1/OBG CDG61_06690 PF01926 50S ribosome-binding GTPase CDG61_06695 PF01472 PUA domain CDG61_06695 PF00696 Amino acid kinase family CDG61_06710 PF01569 PAP2 superfamily CDG61_06720 PF00202 Aminotransferase class-III CDG61_06725 PF00282 Pyridoxal-dependent decarboxylase conserved domain CDG61_06735 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_06740 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_06745 PF00005 ABC transporter CDG61_06750 PF08496 Peptidase family S49 N-terminal CDG61_06750 PF01343 Peptidase family S49 CDG61_06770 PF08328 Adenylosuccinate lyase C-terminal CDG61_06770 PF00206 Lyase CDG61_06775 PF04356 Protein of unknown function (DUF489) CDG61_06785 PF00293 NUDIX domain CDG61_06790 PF00756 Putative esterase CDG61_06805 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_06810 PF07943 Penicillin-binding protein 5, C-terminal domain CDG61_06810 PF00768 D-alanyl-D-alanine carboxypeptidase CDG61_06825 PF01975 Survival protein SurE CDG61_06830 PF01551 Peptidase family M23 CDG61_06830 PF01476 LysM domain CDG61_06835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_06835 PF03466 LysR substrate binding domain CDG61_06840 PF00202 Aminotransferase class-III CDG61_06845 PF00462 Glutaredoxin CDG61_06850 PF05362 Lon protease (S16) C-terminal proteolytic domain CDG61_06850 PF13654 AAA domain CDG61_06855 PF07690 Major Facilitator Superfamily CDG61_06860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDG61_06865 PF13593 SBF-like CPA transporter family (DUF4137) CDG61_06870 PF01197 Ribosomal protein L31 CDG61_06885 PF04055 Radical SAM superfamily CDG61_06890 PF09285 Elongation factor P, C-terminal CDG61_06890 PF08207 Elongation factor P (EF-P) KOW-like domain CDG61_06890 PF01132 Elongation factor P (EF-P) OB domain CDG61_06895 PF02554 Carbon starvation protein CstA CDG61_06895 PF13722 5TM C-terminal transporter carbon starvation CstA CDG61_06900 PF04328 Selenoprotein, putative CDG61_06905 PF07726 ATPase family associated with various cellular activities (AAA) CDG61_06905 PF17863 AAA lid domain CDG61_06915 PF01841 Transglutaminase-like superfamily CDG61_06915 PF13559 Domain of unknown function (DUF4129) CDG61_06915 PF11992 Domain of unknown function (DUF3488) CDG61_06930 PF01040 UbiA prenyltransferase family CDG61_06935 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CDG61_06940 PF00510 Cytochrome c oxidase subunit III CDG61_06945 PF00115 Cytochrome C and Quinol oxidase polypeptide I CDG61_06950 PF06481 COX Aromatic Rich Motif CDG61_06950 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CDG61_06960 PF00391 PEP-utilising enzyme, mobile domain CDG61_06960 PF02896 PEP-utilising enzyme, TIM barrel domain CDG61_06960 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CDG61_06965 PF03618 Kinase/pyrophosphorylase CDG61_06980 PF05360 yiaA/B two helix domain CDG61_06985 PF00296 Luciferase-like monooxygenase CDG61_07005 PF00472 RF-1 domain CDG61_07005 PF03462 PCRF domain CDG61_07010 PF13847 Methyltransferase domain CDG61_07010 PF17827 PrmC N-terminal domain CDG61_07025 PF00106 short chain dehydrogenase CDG61_07030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_07030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_07030 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_07035 PF00501 AMP-binding enzyme CDG61_07035 PF13193 AMP-binding enzyme C-terminal domain CDG61_07050 PF00899 ThiF family CDG61_07055 PF03109 ABC1 family CDG61_07075 PF03814 Potassium-transporting ATPase A subunit CDG61_07085 PF02669 K+-transporting ATPase, c chain CDG61_07090 PF02702 Osmosensitive K+ channel His kinase sensor domain CDG61_07090 PF13493 Domain of unknown function (DUF4118) CDG61_07090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_07090 PF00512 His Kinase A (phospho-acceptor) domain CDG61_07095 PF00072 Response regulator receiver domain CDG61_07095 PF00486 Transcriptional regulatory protein, C terminal CDG61_07100 PF03232 Ubiquinone biosynthesis protein COQ7 CDG61_07105 PF07690 Major Facilitator Superfamily CDG61_07110 PF07244 Surface antigen variable number repeat CDG61_07110 PF17243 POTRA domain TamA domain 1 CDG61_07110 PF01103 Surface antigen CDG61_07120 PF12464 Maltose acetyltransferase CDG61_07120 PF14602 Hexapeptide repeat of succinyl-transferase CDG61_07140 PF00484 Carbonic anhydrase CDG61_07190 PF06434 Aconitate hydratase 2 N-terminus CDG61_07190 PF11791 Aconitate B N-terminal domain CDG61_07190 PF00330 Aconitase family (aconitate hydratase) CDG61_07205 PF06039 Malate:quinone oxidoreductase (Mqo) CDG61_07210 PF17862 AAA+ lid domain CDG61_07210 PF00004 ATPase family associated with various cellular activities (AAA) CDG61_07210 PF01434 Peptidase family M41 CDG61_07220 PF01037 Lrp/AsnC ligand binding domain CDG61_07225 PF00324 Amino acid permease CDG61_07235 PF02110 Hydroxyethylthiazole kinase family CDG61_07250 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CDG61_07250 PF01433 Peptidase family M1 domain CDG61_07250 PF11940 Domain of unknown function (DUF3458) Ig-like fold CDG61_07260 PF00582 Universal stress protein family CDG61_07265 PF00582 Universal stress protein family CDG61_07270 PF00893 Small Multidrug Resistance protein CDG61_07280 PF03594 Benzoate membrane transport protein CDG61_07285 PF01810 LysE type translocator CDG61_07290 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDG61_07295 PF03466 LysR substrate binding domain CDG61_07295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_07305 PF00732 GMC oxidoreductase CDG61_07305 PF05199 GMC oxidoreductase CDG61_07310 PF00171 Aldehyde dehydrogenase family CDG61_07315 PF02390 Putative methyltransferase CDG61_07320 PF05384 Sensor protein DegS CDG61_07320 PF07730 Histidine kinase CDG61_07320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_07325 PF00916 Sulfate permease family CDG61_07325 PF01740 STAS domain CDG61_07330 PF02798 Glutathione S-transferase, N-terminal domain CDG61_07330 PF00043 Glutathione S-transferase, C-terminal domain CDG61_07335 PF05690 Thiazole biosynthesis protein ThiG CDG61_07345 PF04241 Protein of unknown function (DUF423) CDG61_07350 PF04545 Sigma-70, region 4 CDG61_07350 PF04542 Sigma-70 region 2 CDG61_07350 PF00140 Sigma-70 factor, region 1.2 CDG61_07360 PF00313 'Cold-shock' DNA-binding domain CDG61_07365 PF00271 Helicase conserved C-terminal domain CDG61_07365 PF00270 DEAD/DEAH box helicase CDG61_07375 PF00881 Nitroreductase family CDG61_07380 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDG61_07380 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDG61_07400 PF01180 Dihydroorotate dehydrogenase CDG61_07410 PF00156 Phosphoribosyl transferase domain CDG61_07425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG61_07425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG61_07430 PF01435 Peptidase family M48 CDG61_07445 PF09424 Yqey-like protein CDG61_07450 PF01165 Ribosomal protein S21 CDG61_07455 PF00814 Glycoprotease family CDG61_07460 PF00677 Lumazine binding domain CDG61_07480 PF03793 PASTA domain CDG61_07480 PF00069 Protein kinase domain CDG61_07515 PF01645 Conserved region in glutamate synthase CDG61_07520 PF00196 Bacterial regulatory proteins, luxR family CDG61_07520 PF00072 Response regulator receiver domain CDG61_07525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_07525 PF07730 Histidine kinase CDG61_07530 PF08007 Cupin superfamily protein CDG61_07540 PF02545 Maf-like protein CDG61_07550 PF00162 Phosphoglycerate kinase CDG61_07560 PF01116 Fructose-bisphosphate aldolase class-II CDG61_07580 PF00149 Calcineurin-like phosphoesterase CDG61_07585 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDG61_07590 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG61_07590 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CDG61_07595 PF06865 Pyrimidine/purine nucleoside phosphorylase CDG61_07600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_07600 PF03466 LysR substrate binding domain CDG61_07605 PF00248 Aldo/keto reductase family CDG61_07635 PF05958 tRNA (Uracil-5-)-methyltransferase CDG61_07640 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CDG61_07640 PF01619 Proline dehydrogenase CDG61_07640 PF00171 Aldehyde dehydrogenase family CDG61_07640 PF14850 DNA-binding domain of Proline dehydrogenase CDG61_07645 PF01037 Lrp/AsnC ligand binding domain CDG61_07650 PF00474 Sodium:solute symporter family CDG61_07655 PF10415 Fumarase C C-terminus CDG61_07655 PF00206 Lyase CDG61_07665 PF02146 Sir2 family CDG61_07670 PF03466 LysR substrate binding domain CDG61_07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_07675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_07675 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_07675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_07680 PF02515 CoA-transferase family III CDG61_07685 PF03466 LysR substrate binding domain CDG61_07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_07700 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_07700 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG61_07715 PF07690 Major Facilitator Superfamily CDG61_07720 PF00248 Aldo/keto reductase family CDG61_07725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_07725 PF03466 LysR substrate binding domain CDG61_07735 PF06418 CTP synthase N-terminus CDG61_07735 PF00117 Glutamine amidotransferase class-I CDG61_07740 PF00793 DAHP synthetase I family CDG61_07745 PF00113 Enolase, C-terminal TIM barrel domain CDG61_07745 PF03952 Enolase, N-terminal domain CDG61_07750 PF04977 Septum formation initiator CDG61_07755 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDG61_07760 PF01098 Cell cycle protein CDG61_07765 PF01266 FAD dependent oxidoreductase CDG61_07780 PF02542 YgbB family CDG61_07790 PF00793 DAHP synthetase I family CDG61_07795 PF01925 Sulfite exporter TauE/SafE CDG61_07800 PF02684 Lipid-A-disaccharide synthetase CDG61_07805 PF12833 Helix-turn-helix domain CDG61_07805 PF12852 Cupin CDG61_07810 PF00487 Fatty acid desaturase CDG61_07815 PF13460 NAD(P)H-binding CDG61_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_07820 PF03466 LysR substrate binding domain CDG61_07825 PF00583 Acetyltransferase (GNAT) family CDG61_07830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_07830 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_07830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_07840 PF03109 ABC1 family CDG61_07860 PF05175 Methyltransferase small domain CDG61_07865 PF01264 Chorismate synthase CDG61_07890 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDG61_07895 PF03956 Lysine exporter LysO CDG61_07900 PF00743 Flavin-binding monooxygenase-like CDG61_07905 PF12833 Helix-turn-helix domain CDG61_07905 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_07910 PF03969 AFG1-like ATPase CDG61_07920 PF01274 Malate synthase CDG61_07930 PF03741 Integral membrane protein TerC family CDG61_07930 PF03471 Transporter associated domain CDG61_07945 PF08173 Membrane bound YbgT-like protein CDG61_07950 PF02322 Cytochrome bd terminal oxidase subunit II CDG61_07955 PF01654 Cytochrome bd terminal oxidase subunit I CDG61_07965 PF07290 Protein of unknown function (DUF1449) CDG61_07975 PF00294 pfkB family carbohydrate kinase CDG61_07980 PF13673 Acetyltransferase (GNAT) domain CDG61_07985 PF00293 NUDIX domain CDG61_08000 PF05193 Peptidase M16 inactive domain CDG61_08000 PF08367 Peptidase M16C associated CDG61_08000 PF00675 Insulinase (Peptidase family M16) CDG61_08005 PF02253 Phospholipase A1 CDG61_08010 PF02386 Cation transport protein CDG61_08015 PF02080 TrkA-C domain CDG61_08015 PF02254 TrkA-N domain CDG61_08025 PF00291 Pyridoxal-phosphate dependent enzyme CDG61_08025 PF00585 C-terminal regulatory domain of Threonine dehydratase CDG61_08030 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDG61_08040 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDG61_08040 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG61_08050 PF02617 ATP-dependent Clp protease adaptor protein ClpS CDG61_08055 PF00004 ATPase family associated with various cellular activities (AAA) CDG61_08055 PF07724 AAA domain (Cdc48 subfamily) CDG61_08055 PF17871 AAA lid domain CDG61_08055 PF02861 Clp amino terminal domain, pathogenicity island component CDG61_08055 PF10431 C-terminal, D2-small domain, of ClpB protein CDG61_08060 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CDG61_08080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDG61_08080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDG61_08085 PF00440 Bacterial regulatory proteins, tetR family CDG61_08095 PF00285 Citrate synthase, C-terminal domain CDG61_08100 PF01638 HxlR-like helix-turn-helix CDG61_08120 PF02635 DsrE/DsrF-like family CDG61_08125 PF00589 Phage integrase family CDG61_08150 PF01381 Helix-turn-helix CDG61_08210 PF00313 'Cold-shock' DNA-binding domain CDG61_08255 PF03354 Phage Terminase CDG61_08260 PF04860 Phage portal protein CDG61_08380 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB CDG61_08385 PF01381 Helix-turn-helix CDG61_08395 PF02086 D12 class N6 adenine-specific DNA methyltransferase CDG61_08420 PF16363 GDP-mannose 4,6 dehydratase CDG61_08425 PF10415 Fumarase C C-terminus CDG61_08425 PF00206 Lyase CDG61_08440 PF07690 Major Facilitator Superfamily CDG61_08460 PF01654 Cytochrome bd terminal oxidase subunit I CDG61_08465 PF02322 Cytochrome bd terminal oxidase subunit II CDG61_08480 PF00155 Aminotransferase class I and II CDG61_08480 PF00392 Bacterial regulatory proteins, gntR family CDG61_08490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_08490 PF03466 LysR substrate binding domain CDG61_08495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_08495 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_08495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_08510 PF00106 short chain dehydrogenase CDG61_08545 PF00892 EamA-like transporter family CDG61_08550 PF00392 Bacterial regulatory proteins, gntR family CDG61_08550 PF00155 Aminotransferase class I and II CDG61_08565 PF13091 PLD-like domain CDG61_08570 PF08240 Alcohol dehydrogenase GroES-like domain CDG61_08570 PF00107 Zinc-binding dehydrogenase CDG61_08575 PF12848 ABC transporter CDG61_08575 PF00005 ABC transporter CDG61_08580 PF00155 Aminotransferase class I and II CDG61_08585 PF00793 DAHP synthetase I family CDG61_08590 PF00437 Type II/IV secretion system protein CDG61_08595 PF07690 Major Facilitator Superfamily CDG61_08605 PF01597 Glycine cleavage H-protein CDG61_08610 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_08610 PF12833 Helix-turn-helix domain CDG61_08615 PF01575 MaoC like domain CDG61_08620 PF00664 ABC transporter transmembrane region CDG61_08620 PF00005 ABC transporter CDG61_08625 PF00924 Mechanosensitive ion channel CDG61_08630 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CDG61_08640 PF00375 Sodium:dicarboxylate symporter family CDG61_08645 PF00916 Sulfate permease family CDG61_08645 PF01740 STAS domain CDG61_08655 PF01553 Acyltransferase CDG61_08660 PF00291 Pyridoxal-phosphate dependent enzyme CDG61_08665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_08665 PF03466 LysR substrate binding domain CDG61_08675 PF00892 EamA-like transporter family CDG61_08680 PF00106 short chain dehydrogenase CDG61_08705 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CDG61_08705 PF18381 YcaO cyclodehydratase C-terminal domain CDG61_08715 PF17954 Quercetinase C-terminal cupin domain CDG61_08715 PF02678 Pirin CDG61_08740 PF00005 ABC transporter CDG61_08750 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_08755 PF00902 Sec-independent protein translocase protein (TatC) CDG61_08760 PF02416 mttA/Hcf106 family CDG61_08765 PF02416 mttA/Hcf106 family CDG61_08775 PF00106 short chain dehydrogenase CDG61_08780 PF12833 Helix-turn-helix domain CDG61_08780 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_08795 PF00753 Metallo-beta-lactamase superfamily CDG61_08800 PF14765 Polyketide synthase dehydratase CDG61_08800 PF02801 Beta-ketoacyl synthase, C-terminal domain CDG61_08800 PF08659 KR domain CDG61_08800 PF08240 Alcohol dehydrogenase GroES-like domain CDG61_08800 PF00698 Acyl transferase domain CDG61_08800 PF00550 Phosphopantetheine attachment site CDG61_08800 PF00109 Beta-ketoacyl synthase, N-terminal domain CDG61_08800 PF16197 Ketoacyl-synthetase C-terminal extension CDG61_08815 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_08815 PF12833 Helix-turn-helix domain CDG61_08905 PF00593 TonB dependent receptor CDG61_08905 PF07715 TonB-dependent Receptor Plug Domain CDG61_08910 PF12697 Alpha/beta hydrolase family CDG61_08920 PF00593 TonB dependent receptor CDG61_08920 PF07715 TonB-dependent Receptor Plug Domain CDG61_08930 PF00753 Metallo-beta-lactamase superfamily CDG61_08940 PF04143 Sulphur transport CDG61_08945 PF00512 His Kinase A (phospho-acceptor) domain CDG61_08945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_08950 PF00486 Transcriptional regulatory protein, C terminal CDG61_08950 PF00072 Response regulator receiver domain CDG61_08955 PF02683 Cytochrome C biogenesis protein transmembrane region CDG61_08955 PF11412 Disulphide bond corrector protein DsbC CDG61_08960 PF00578 AhpC/TSA family CDG61_08965 PF13098 Thioredoxin-like domain CDG61_08975 PF13419 Haloacid dehalogenase-like hydrolase CDG61_08980 PF00266 Aminotransferase class-V CDG61_08985 PF01266 FAD dependent oxidoreductase CDG61_08990 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_08995 PF00005 ABC transporter CDG61_08995 PF08402 TOBE domain CDG61_09005 PF07729 FCD domain CDG61_09005 PF00392 Bacterial regulatory proteins, gntR family CDG61_09020 PF03466 LysR substrate binding domain CDG61_09020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_09025 PF03788 LrgA family CDG61_09030 PF04172 LrgB-like family CDG61_09035 PF02654 Cobalamin-5-phosphate synthase CDG61_09045 PF02277 Phosphoribosyltransferase CDG61_09050 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CDG61_09060 PF01220 Dehydroquinase class II CDG61_09065 PF00364 Biotin-requiring enzyme CDG61_09070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDG61_09070 PF00289 Biotin carboxylase, N-terminal domain CDG61_09070 PF02785 Biotin carboxylase C-terminal domain CDG61_09080 PF00990 Diguanylate cyclase, GGDEF domain CDG61_09085 PF01425 Amidase CDG61_09090 PF12832 MFS_1 like family CDG61_09110 PF00717 Peptidase S24-like CDG61_09115 PF11799 impB/mucB/samB family C-terminal domain CDG61_09115 PF00817 impB/mucB/samB family CDG61_09115 PF13438 Domain of unknown function (DUF4113) CDG61_09375 PF01381 Helix-turn-helix CDG61_09375 PF00717 Peptidase S24-like CDG61_09460 PF04073 Aminoacyl-tRNA editing domain CDG61_09500 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CDG61_09510 PF02881 SRP54-type protein, helical bundle domain CDG61_09510 PF00448 SRP54-type protein, GTPase domain CDG61_09515 PF00675 Insulinase (Peptidase family M16) CDG61_09515 PF05193 Peptidase M16 inactive domain CDG61_09545 PF00571 CBS domain CDG61_09545 PF00478 IMP dehydrogenase / GMP reductase domain CDG61_09550 PF00291 Pyridoxal-phosphate dependent enzyme CDG61_09565 PF01434 Peptidase family M41 CDG61_09565 PF00004 ATPase family associated with various cellular activities (AAA) CDG61_09565 PF17862 AAA+ lid domain CDG61_09575 PF05166 YcgL domain CDG61_09580 PF00570 HRDC domain CDG61_09580 PF01612 3'-5' exonuclease CDG61_09585 PF02132 RecR protein CDG61_09585 PF13662 Toprim domain CDG61_09590 PF02575 YbaB/EbfC DNA-binding family CDG61_09595 PF01053 Cys/Met metabolism PLP-dependent enzyme CDG61_09605 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDG61_09605 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDG61_09615 PF01230 HIT domain CDG61_09625 PF06078 Bacterial protein of unknown function (DUF937) CDG61_09640 PF09312 SurA N-terminal domain CDG61_09640 PF00639 PPIC-type PPIASE domain CDG61_09645 PF00216 Bacterial DNA-binding protein CDG61_09660 PF02082 Transcriptional regulator CDG61_09665 PF00266 Aminotransferase class-V CDG61_09670 PF01592 NifU-like N terminal domain CDG61_09675 PF01521 Iron-sulphur cluster biosynthesis CDG61_09680 PF00226 DnaJ domain CDG61_09680 PF07743 HSCB C-terminal oligomerisation domain CDG61_09685 PF00012 Hsp70 protein CDG61_09690 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG61_09695 PF00211 Adenylate and Guanylate cyclase catalytic domain CDG61_09705 PF00270 DEAD/DEAH box helicase CDG61_09705 PF02559 CarD-like/TRCF domain CDG61_09705 PF03461 TRCF domain CDG61_09705 PF17757 UvrB interaction domain CDG61_09705 PF00271 Helicase conserved C-terminal domain CDG61_09720 PF03737 Aldolase/RraA CDG61_09730 PF01649 Ribosomal protein S20 CDG61_09740 PF00041 Fibronectin type III domain CDG61_09740 PF12561 ToxR activated gene A lipoprotein domain CDG61_09750 PF00459 Inositol monophosphatase family CDG61_09755 PF13419 Haloacid dehalogenase-like hydrolase CDG61_09760 PF01479 S4 domain CDG61_09765 PF00154 recA bacterial DNA recombination protein CDG61_09770 PF02631 RecX family CDG61_09785 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_09785 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CDG61_09790 PF07977 FabA-like domain CDG61_09795 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CDG61_09795 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_09805 PF07244 Surface antigen variable number repeat CDG61_09805 PF01103 Surface antigen CDG61_09810 PF13180 PDZ domain CDG61_09810 PF02163 Peptidase family M50 CDG61_09810 PF17820 PDZ domain CDG61_09815 PF13288 DXP reductoisomerase C-terminal domain CDG61_09815 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CDG61_09815 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CDG61_09825 PF01255 Putative undecaprenyl diphosphate synthase CDG61_09830 PF01765 Ribosome recycling factor CDG61_09835 PF00696 Amino acid kinase family CDG61_09840 PF00919 Uncharacterized protein family UPF0004 CDG61_09840 PF04055 Radical SAM superfamily CDG61_09840 PF18693 TRAM domain CDG61_09845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_09845 PF00512 His Kinase A (phospho-acceptor) domain CDG61_09845 PF00989 PAS fold CDG61_09850 PF02954 Bacterial regulatory protein, Fis family CDG61_09850 PF00072 Response regulator receiver domain CDG61_09850 PF00158 Sigma-54 interaction domain CDG61_09860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_09860 PF03466 LysR substrate binding domain CDG61_09865 PF00557 Metallopeptidase family M24 CDG61_09870 PF05525 Branched-chain amino acid transport protein CDG61_09885 PF00216 Bacterial DNA-binding protein CDG61_09890 PF00575 S1 RNA binding domain CDG61_09895 PF02224 Cytidylate kinase CDG61_09905 PF14437 MafB19-like deaminase CDG61_09915 PF03167 Uracil DNA glycosylase superfamily CDG61_09925 PF03934 Type II secretion system (T2SS), protein K CDG61_09930 PF07963 Prokaryotic N-terminal methylation motif CDG61_09930 PF11612 Type II secretion system (T2SS), protein J CDG61_09935 PF02501 Type II secretion system (T2SS), protein I CDG61_09935 PF07963 Prokaryotic N-terminal methylation motif CDG61_09940 PF07963 Prokaryotic N-terminal methylation motif CDG61_09950 PF01026 TatD related DNase CDG61_09960 PF09115 DNA polymerase III, delta subunit, C terminal CDG61_09965 PF02348 Cytidylyltransferase CDG61_09970 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CDG61_09975 PF00005 ABC transporter CDG61_09975 PF00664 ABC transporter transmembrane region CDG61_09985 PF01618 MotA/TolQ/ExbB proton channel family CDG61_09990 PF02195 ParB-like nuclease domain CDG61_09990 PF17762 HTH domain found in ParB protein CDG61_09995 PF13614 AAA domain CDG61_10000 PF02527 rRNA small subunit methyltransferase G CDG61_10005 PF00483 Nucleotidyl transferase CDG61_10010 PF01636 Phosphotransferase enzyme family CDG61_10015 PF04453 LPS transport system D CDG61_10015 PF03968 OstA-like protein CDG61_10020 PF00639 PPIC-type PPIASE domain CDG61_10020 PF09312 SurA N-terminal domain CDG61_10025 PF17209 Hfq protein CDG61_10035 PF08676 MutL C terminal dimerisation domain CDG61_10035 PF01119 DNA mismatch repair protein, C-terminal domain CDG61_10040 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDG61_10045 PF01479 S4 domain CDG61_10045 PF00849 RNA pseudouridylate synthase CDG61_10060 PF00849 RNA pseudouridylate synthase CDG61_10060 PF01479 S4 domain CDG61_10065 PF04284 Protein of unknown function (DUF441) CDG61_10075 PF03707 Bacterial signalling protein N terminal repeat CDG61_10075 PF00563 EAL domain CDG61_10075 PF00990 Diguanylate cyclase, GGDEF domain CDG61_10085 PF03466 LysR substrate binding domain CDG61_10085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_10090 PF03616 Sodium/glutamate symporter CDG61_10095 PF07690 Major Facilitator Superfamily CDG61_10100 PF00520 Ion transport protein CDG61_10100 PF00027 Cyclic nucleotide-binding domain CDG61_10105 PF05970 PIF1-like helicase CDG61_10105 PF14493 Helix-turn-helix domain CDG61_10115 PF00465 Iron-containing alcohol dehydrogenase CDG61_10120 PF00106 short chain dehydrogenase CDG61_10125 PF00106 short chain dehydrogenase CDG61_10140 PF00171 Aldehyde dehydrogenase family CDG61_10145 PF03466 LysR substrate binding domain CDG61_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_10155 PF01323 DSBA-like thioredoxin domain CDG61_10160 PF00106 short chain dehydrogenase CDG61_10165 PF00440 Bacterial regulatory proteins, tetR family CDG61_10170 PF00958 GMP synthase C terminal domain CDG61_10170 PF00117 Glutamine amidotransferase class-I CDG61_10170 PF02540 NAD synthase CDG61_10175 PF04264 YceI-like domain CDG61_10195 PF02780 Transketolase, C-terminal domain CDG61_10195 PF00456 Transketolase, thiamine diphosphate binding domain CDG61_10195 PF02779 Transketolase, pyrimidine binding domain CDG61_10200 PF00990 Diguanylate cyclase, GGDEF domain CDG61_10205 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDG61_10205 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDG61_10205 PF02772 S-adenosylmethionine synthetase, central domain CDG61_10220 PF01810 LysE type translocator CDG61_10235 PF02075 Crossover junction endodeoxyribonuclease RuvC CDG61_10250 PF00708 Acylphosphatase CDG61_10255 PF01256 Carbohydrate kinase CDG61_10255 PF03853 YjeF-related protein N-terminus CDG61_10260 PF08331 Domain of unknown function (DUF1730) CDG61_10265 PF04055 Radical SAM superfamily CDG61_10265 PF06968 Biotin and Thiamin Synthesis associated domain CDG61_10280 PF00501 AMP-binding enzyme CDG61_10280 PF13193 AMP-binding enzyme C-terminal domain CDG61_10295 PF00313 'Cold-shock' DNA-binding domain CDG61_10305 PF01553 Acyltransferase CDG61_10310 PF01709 Transcriptional regulator CDG61_10325 PF01926 50S ribosome-binding GTPase CDG61_10325 PF06071 Protein of unknown function (DUF933) CDG61_10335 PF13545 Crp-like helix-turn-helix domain CDG61_10335 PF00027 Cyclic nucleotide-binding domain CDG61_10345 PF03591 AzlC protein CDG61_10355 PF02222 ATP-grasp domain CDG61_10360 PF08335 GlnD PII-uridylyltransferase CDG61_10360 PF01966 HD domain CDG61_10360 PF01909 Nucleotidyltransferase domain CDG61_10365 PF00155 Aminotransferase class I and II CDG61_10375 PF00255 Glutathione peroxidase CDG61_10380 PF01641 SelR domain CDG61_10385 PF00155 Aminotransferase class I and II CDG61_10390 PF00753 Metallo-beta-lactamase superfamily CDG61_10390 PF16123 Hydroxyacylglutathione hydrolase C-terminus CDG61_10405 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDG61_10405 PF01565 FAD binding domain CDG61_10410 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDG61_10415 PF00465 Iron-containing alcohol dehydrogenase CDG61_10420 PF03061 Thioesterase superfamily CDG61_10425 PF04185 Phosphoesterase family CDG61_10425 PF05506 Domain of unknown function (DUF756) CDG61_10430 PF12170 DNA polymerase III tau subunit V interacting with alpha CDG61_10430 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CDG61_10430 PF12169 DNA polymerase III subunits gamma and tau domain III CDG61_10450 PF00108 Thiolase, N-terminal domain CDG61_10450 PF02803 Thiolase, C-terminal domain CDG61_10470 PF00691 OmpA family CDG61_10470 PF18393 MotY N-terminal domain CDG61_10475 PF01979 Amidohydrolase family CDG61_10480 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDG61_10480 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDG61_10495 PF01170 Putative RNA methylase family UPF0020 CDG61_10495 PF02926 THUMP domain CDG61_10495 PF10672 S-adenosylmethionine-dependent methyltransferase CDG61_10510 PF00004 ATPase family associated with various cellular activities (AAA) CDG61_10510 PF02861 Clp amino terminal domain, pathogenicity island component CDG61_10510 PF07724 AAA domain (Cdc48 subfamily) CDG61_10510 PF17871 AAA lid domain CDG61_10510 PF10431 C-terminal, D2-small domain, of ClpB protein CDG61_10515 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_10530 PF00266 Aminotransferase class-V CDG61_10535 PF02566 OsmC-like protein CDG61_10540 PF13545 Crp-like helix-turn-helix domain CDG61_10540 PF00027 Cyclic nucleotide-binding domain CDG61_10560 PF01435 Peptidase family M48 CDG61_10560 PF07720 Tetratricopeptide repeat CDG61_10565 PF00709 Adenylosuccinate synthetase CDG61_10570 PF13393 Histidyl-tRNA synthetase CDG61_10580 PF01037 Lrp/AsnC ligand binding domain CDG61_10600 PF02470 MlaD protein CDG61_10605 PF04403 Paraquat-inducible protein A CDG61_10610 PF04403 Paraquat-inducible protein A CDG61_10620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDG61_10620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDG61_10630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDG61_10630 PF01411 tRNA synthetases class II (A) CDG61_10630 PF02272 DHHA1 domain CDG61_10635 PF01842 ACT domain CDG61_10635 PF13840 ACT domain CDG61_10635 PF00696 Amino acid kinase family CDG61_10640 PF02599 Global regulator protein family CDG61_10645 PF01351 Ribonuclease HII CDG61_10655 PF01292 Prokaryotic cytochrome b561 CDG61_10665 PF00962 Adenosine/AMP deaminase CDG61_10670 PF00860 Permease family CDG61_10680 PF01250 Ribosomal protein S6 CDG61_10685 PF01084 Ribosomal protein S18 CDG61_10690 PF01281 Ribosomal protein L9, N-terminal domain CDG61_10690 PF03948 Ribosomal protein L9, C-terminal domain CDG61_10695 PF00772 DnaB-like helicase N terminal domain CDG61_10695 PF03796 DnaB-like helicase C terminal domain CDG61_10710 PF01168 Alanine racemase, N-terminal domain CDG61_10710 PF00842 Alanine racemase, C-terminal domain CDG61_10720 PF01841 Transglutaminase-like superfamily CDG61_10720 PF08379 Bacterial transglutaminase-like N-terminal region CDG61_10730 PF14403 Circularly permuted ATP-grasp type 2 CDG61_10740 PF07690 Major Facilitator Superfamily CDG61_10755 PF01134 Glucose inhibited division protein A CDG61_10755 PF13932 GidA associated domain CDG61_10785 PF02954 Bacterial regulatory protein, Fis family CDG61_10790 PF02142 MGS-like domain CDG61_10790 PF01808 AICARFT/IMPCHase bienzyme CDG61_10795 PF02844 Phosphoribosylglycinamide synthetase, N domain CDG61_10795 PF02843 Phosphoribosylglycinamide synthetase, C domain CDG61_10795 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDG61_10805 PF13302 Acetyltransferase (GNAT) domain CDG61_10815 PF03180 NLPA lipoprotein CDG61_10820 PF09383 NIL domain CDG61_10820 PF00005 ABC transporter CDG61_10825 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_10830 PF14579 Helix-hairpin-helix motif CDG61_10830 PF02811 PHP domain CDG61_10830 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDG61_10830 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDG61_10830 PF01336 OB-fold nucleic acid binding domain CDG61_10835 PF00588 SpoU rRNA Methylase family CDG61_10840 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_10860 PF00990 Diguanylate cyclase, GGDEF domain CDG61_10870 PF05656 Protein of unknown function (DUF805) CDG61_10885 PF00350 Dynamin family CDG61_10900 PF05192 MutS domain III CDG61_10900 PF01624 MutS domain I CDG61_10900 PF05188 MutS domain II CDG61_10900 PF00488 MutS domain V CDG61_10900 PF05190 MutS family domain IV CDG61_10905 PF00037 4Fe-4S binding domain CDG61_10905 PF11953 Domain of unknown function (DUF3470) CDG61_10915 PF01596 O-methyltransferase CDG61_10930 PF01205 Uncharacterized protein family UPF0029 CDG61_10935 PF13533 Biotin-lipoyl like CDG61_10940 PF00005 ABC transporter CDG61_10940 PF00664 ABC transporter transmembrane region CDG61_10950 PF00005 ABC transporter CDG61_10950 PF12399 Branched-chain amino acid ATP-binding cassette transporter CDG61_10955 PF03968 OstA-like protein CDG61_10970 PF01380 SIS domain CDG61_10970 PF00571 CBS domain CDG61_10985 PF01406 tRNA synthetases class I (C) catalytic domain CDG61_10985 PF09190 DALR domain CDG61_10995 PF09618 CRISPR-associated protein (Cas_Csy4) CDG61_11025 PF01867 CRISPR associated protein Cas1 CDG61_11030 PF00667 FAD binding domain CDG61_11030 PF00258 Flavodoxin CDG61_11030 PF00175 Oxidoreductase NAD-binding domain CDG61_11050 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CDG61_11050 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CDG61_11055 PF02803 Thiolase, C-terminal domain CDG61_11055 PF00108 Thiolase, N-terminal domain CDG61_11060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_11060 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG61_11060 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_11060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_11065 PF08360 QacR-like protein, C-terminal region CDG61_11065 PF00440 Bacterial regulatory proteins, tetR family CDG61_11090 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDG61_11090 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDG61_11095 PF00270 DEAD/DEAH box helicase CDG61_11095 PF04408 Helicase associated domain (HA2) CDG61_11095 PF00271 Helicase conserved C-terminal domain CDG61_11095 PF11898 Domain of unknown function (DUF3418) CDG61_11095 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CDG61_11100 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDG61_11100 PF00578 AhpC/TSA family CDG61_11115 PF01596 O-methyltransferase CDG61_11155 PF04143 Sulphur transport CDG61_11160 PF03060 Nitronate monooxygenase CDG61_11170 PF01207 Dihydrouridine synthase (Dus) CDG61_11175 PF07759 Protein of unknown function (DUF1615) CDG61_11185 PF00487 Fatty acid desaturase CDG61_11190 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG61_11190 PF00970 Oxidoreductase FAD-binding domain CDG61_11190 PF00175 Oxidoreductase NAD-binding domain CDG61_11195 PF00440 Bacterial regulatory proteins, tetR family CDG61_11205 PF00271 Helicase conserved C-terminal domain CDG61_11205 PF18339 RapA N-terminal Tudor like domain 1 CDG61_11205 PF18337 RapA N-terminal Tudor like domain CDG61_11205 PF00176 SNF2 family N-terminal domain CDG61_11205 PF12137 RNA polymerase recycling family C-terminal CDG61_11210 PF00849 RNA pseudouridylate synthase CDG61_11225 PF00202 Aminotransferase class-III CDG61_11230 PF02581 Thiamine monophosphate synthase CDG61_11280 PF00717 Peptidase S24-like CDG61_11285 PF11798 IMS family HHH motif CDG61_11285 PF13438 Domain of unknown function (DUF4113) CDG61_11285 PF11799 impB/mucB/samB family C-terminal domain CDG61_11285 PF00817 impB/mucB/samB family CDG61_11295 PF05193 Peptidase M16 inactive domain CDG61_11295 PF00675 Insulinase (Peptidase family M16) CDG61_11305 PF02567 Phenazine biosynthesis-like protein CDG61_11315 PF01613 Flavin reductase like domain CDG61_11330 PF00180 Isocitrate/isopropylmalate dehydrogenase CDG61_11335 PF00849 RNA pseudouridylate synthase CDG61_11340 PF01925 Sulfite exporter TauE/SafE CDG61_11345 PF01613 Flavin reductase like domain CDG61_11350 PF01717 Cobalamin-independent synthase, Catalytic domain CDG61_11350 PF08267 Cobalamin-independent synthase, N-terminal domain CDG61_11360 PF03971 Monomeric isocitrate dehydrogenase CDG61_11370 PF07943 Penicillin-binding protein 5, C-terminal domain CDG61_11370 PF00768 D-alanyl-D-alanine carboxypeptidase CDG61_11375 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_11380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG61_11390 PF00875 DNA photolyase CDG61_11390 PF03441 FAD binding domain of DNA photolyase CDG61_11405 PF03883 Peroxide stress protein YaaA CDG61_11415 PF00158 Sigma-54 interaction domain CDG61_11415 PF06956 Regulator of RNA terminal phosphate cyclase CDG61_11420 PF01139 tRNA-splicing ligase RtcB CDG61_11435 PF01137 RNA 3'-terminal phosphate cyclase CDG61_11435 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain CDG61_11450 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDG61_11455 PF00800 Prephenate dehydratase CDG61_11455 PF01842 ACT domain CDG61_11455 PF01817 Chorismate mutase type II CDG61_11460 PF01965 DJ-1/PfpI family CDG61_11465 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_11465 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_11465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_11470 PF00375 Sodium:dicarboxylate symporter family CDG61_11475 PF02885 Glycosyl transferase family, helical bundle domain CDG61_11475 PF00591 Glycosyl transferase family, a/b domain CDG61_11480 PF07023 Protein of unknown function (DUF1315) CDG61_11485 PF01513 ATP-NAD kinase CDG61_11490 PF00905 Penicillin binding protein transpeptidase domain CDG61_11490 PF00912 Transglycosylase CDG61_11490 PF14814 Bifunctional transglycosylase second domain CDG61_11500 PF02581 Thiamine monophosphate synthase CDG61_11510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_11510 PF08521 Two-component sensor kinase N-terminal CDG61_11510 PF00512 His Kinase A (phospho-acceptor) domain CDG61_11515 PF00486 Transcriptional regulatory protein, C terminal CDG61_11515 PF00072 Response regulator receiver domain CDG61_11525 PF00437 Type II/IV secretion system protein CDG61_11540 PF18389 TrmO C-terminal domain CDG61_11540 PF01980 tRNA-methyltransferase O CDG61_11545 PF00970 Oxidoreductase FAD-binding domain CDG61_11545 PF00175 Oxidoreductase NAD-binding domain CDG61_11555 PF01011 PQQ enzyme repeat CDG61_11555 PF13360 PQQ-like domain CDG61_11560 PF00248 Aldo/keto reductase family CDG61_11575 PF13411 MerR HTH family regulatory protein CDG61_11590 PF01022 Bacterial regulatory protein, arsR family CDG61_11600 PF00037 4Fe-4S binding domain CDG61_11610 PF03466 LysR substrate binding domain CDG61_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_11615 PF02525 Flavodoxin-like fold CDG61_11620 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_11620 PF13192 Thioredoxin domain CDG61_11635 PF05816 Toxic anion resistance protein (TelA) CDG61_11650 PF01272 Transcription elongation factor, GreA/GreB, C-term CDG61_11650 PF14760 Rnk N-terminus CDG61_11660 PF00464 Serine hydroxymethyltransferase CDG61_11695 PF00005 ABC transporter CDG61_11700 PF01061 ABC-2 type transporter CDG61_11705 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CDG61_11705 PF14489 QueF-like protein CDG61_11715 PF13406 Transglycosylase SLT domain CDG61_11720 PF05036 Sporulation related domain CDG61_11720 PF03330 Lytic transglycolase CDG61_11725 PF07969 Amidohydrolase family CDG61_11760 PF00889 Elongation factor TS CDG61_11765 PF00318 Ribosomal protein S2 CDG61_11770 PF00557 Metallopeptidase family M24 CDG61_11795 PF03466 LysR substrate binding domain CDG61_11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_11800 PF05726 Pirin C-terminal cupin domain CDG61_11800 PF02678 Pirin CDG61_11820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDG61_11820 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_11825 PF04055 Radical SAM superfamily CDG61_11840 PF00152 tRNA synthetases class II (D, K and N) CDG61_11845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG61_11845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG61_11845 PF11890 Domain of unknown function (DUF3410) CDG61_11855 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDG61_11860 PF00004 ATPase family associated with various cellular activities (AAA) CDG61_11860 PF05362 Lon protease (S16) C-terminal proteolytic domain CDG61_11860 PF02190 ATP-dependent protease La (LON) substrate-binding domain CDG61_11870 PF04389 Peptidase family M28 CDG61_11875 PF02590 Predicted SPOUT methyltransferase CDG61_11880 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDG61_11895 PF07859 alpha/beta hydrolase fold CDG61_11900 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDG61_11900 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDG61_11910 PF04060 Putative Fe-S cluster CDG61_11915 PF00730 HhH-GPD superfamily base excision DNA repair protein CDG61_11915 PF00633 Helix-hairpin-helix motif CDG61_11915 PF10576 Iron-sulfur binding domain of endonuclease III CDG61_11925 PF05191 Adenylate kinase, active site lid CDG61_11940 PF03717 Penicillin-binding Protein dimerisation domain CDG61_11940 PF00905 Penicillin binding protein transpeptidase domain CDG61_11970 PF01553 Acyltransferase CDG61_11980 PF00463 Isocitrate lyase family CDG61_11985 PF03466 LysR substrate binding domain CDG61_11985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_11990 PF03471 Transporter associated domain CDG61_11990 PF01595 Cyclin M transmembrane N-terminal domain CDG61_11990 PF00571 CBS domain CDG61_11995 PF03600 Citrate transporter CDG61_12010 PF00109 Beta-ketoacyl synthase, N-terminal domain CDG61_12010 PF16197 Ketoacyl-synthetase C-terminal extension CDG61_12010 PF09277 Erythronolide synthase, docking CDG61_12010 PF00550 Phosphopantetheine attachment site CDG61_12010 PF08659 KR domain CDG61_12010 PF14765 Polyketide synthase dehydratase CDG61_12010 PF08990 Erythronolide synthase docking CDG61_12010 PF08240 Alcohol dehydrogenase GroES-like domain CDG61_12010 PF00698 Acyl transferase domain CDG61_12010 PF02801 Beta-ketoacyl synthase, C-terminal domain CDG61_12015 PF00085 Thioredoxin CDG61_12025 PF13180 PDZ domain CDG61_12030 PF01784 NIF3 (NGG1p interacting factor 3) CDG61_12035 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDG61_12035 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDG61_12070 PF00691 OmpA family CDG61_12105 PF01040 UbiA prenyltransferase family CDG61_12110 PF04345 Chorismate lyase CDG61_12120 PF00175 Oxidoreductase NAD-binding domain CDG61_12120 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG61_12120 PF00970 Oxidoreductase FAD-binding domain CDG61_12125 PF00171 Aldehyde dehydrogenase family CDG61_12130 PF00355 Rieske [2Fe-2S] domain CDG61_12130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDG61_12135 PF07859 alpha/beta hydrolase fold CDG61_12140 PF02028 BCCT, betaine/carnitine/choline family transporter CDG61_12150 PF03466 LysR substrate binding domain CDG61_12150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_12170 PF00117 Glutamine amidotransferase class-I CDG61_12175 PF00591 Glycosyl transferase family, a/b domain CDG61_12175 PF02885 Glycosyl transferase family, helical bundle domain CDG61_12180 PF00218 Indole-3-glycerol phosphate synthase CDG61_12215 PF13382 Adenine deaminase C-terminal domain CDG61_12215 PF01979 Amidohydrolase family CDG61_12245 PF05675 Protein of unknown function (DUF817) CDG61_12250 PF01208 Uroporphyrinogen decarboxylase (URO-D) CDG61_12260 PF17954 Quercetinase C-terminal cupin domain CDG61_12260 PF02678 Pirin CDG61_12270 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDG61_12270 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDG61_12275 PF00550 Phosphopantetheine attachment site CDG61_12275 PF00857 Isochorismatase family CDG61_12280 PF00857 Isochorismatase family CDG61_12280 PF00550 Phosphopantetheine attachment site CDG61_12285 PF13193 AMP-binding enzyme C-terminal domain CDG61_12285 PF00501 AMP-binding enzyme CDG61_12290 PF00425 chorismate binding enzyme CDG61_12295 PF00106 short chain dehydrogenase CDG61_12300 PF00668 Condensation domain CDG61_12300 PF00550 Phosphopantetheine attachment site CDG61_12300 PF00501 AMP-binding enzyme CDG61_12300 PF13193 AMP-binding enzyme C-terminal domain CDG61_12305 PF08021 Siderophore-interacting FAD-binding domain CDG61_12305 PF04954 Siderophore-interacting protein CDG61_12310 PF01497 Periplasmic binding protein CDG61_12315 PF01032 FecCD transport family CDG61_12320 PF01032 FecCD transport family CDG61_12325 PF00005 ABC transporter CDG61_12365 PF00009 Elongation factor Tu GTP binding domain CDG61_12370 PF01507 Phosphoadenosine phosphosulfate reductase family CDG61_12380 PF14052 Capsule assembly protein Wzi CDG61_12385 PF00152 tRNA synthetases class II (D, K and N) CDG61_12385 PF01336 OB-fold nucleic acid binding domain CDG61_12395 PF00156 Phosphoribosyl transferase domain CDG61_12400 PF00301 Rubredoxin CDG61_12405 PF18113 Rubredoxin binding C-terminal domain CDG61_12405 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_12410 PF00561 alpha/beta hydrolase fold CDG61_12415 PF03466 LysR substrate binding domain CDG61_12415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_12425 PF13090 Polyphosphate kinase C-terminal domain 2 CDG61_12425 PF02503 Polyphosphate kinase middle domain CDG61_12425 PF17941 Polyphosphate kinase C-terminal domain 1 CDG61_12425 PF13089 Polyphosphate kinase N-terminal domain CDG61_12430 PF00912 Transglycosylase CDG61_12435 PF01694 Rhomboid family CDG61_12445 PF00005 ABC transporter CDG61_12450 PF13472 GDSL-like Lipase/Acylhydrolase family CDG61_12455 PF00484 Carbonic anhydrase CDG61_12460 PF00561 alpha/beta hydrolase fold CDG61_12470 PF00593 TonB dependent receptor CDG61_12470 PF07715 TonB-dependent Receptor Plug Domain CDG61_12475 PF01521 Iron-sulphur cluster biosynthesis CDG61_12475 PF01106 NifU-like domain CDG61_12485 PF00884 Sulfatase CDG61_12490 PF03781 Sulfatase-modifying factor enzyme 1 CDG61_12500 PF01384 Phosphate transporter family CDG61_12505 PF02607 B12 binding domain CDG61_12505 PF02310 B12 binding domain CDG61_12505 PF00809 Pterin binding enzyme CDG61_12505 PF02965 Vitamin B12 dependent methionine synthase, activation domain CDG61_12505 PF02574 Homocysteine S-methyltransferase CDG61_12525 PF00580 UvrD/REP helicase N-terminal domain CDG61_12525 PF13361 UvrD-like helicase C-terminal domain CDG61_12530 PF01327 Polypeptide deformylase CDG61_12540 PF08946 Osmosensory transporter coiled coil CDG61_12540 PF00083 Sugar (and other) transporter CDG61_12560 PF00378 Enoyl-CoA hydratase/isomerase CDG61_12570 PF00440 Bacterial regulatory proteins, tetR family CDG61_12590 PF00535 Glycosyl transferase family 2 CDG61_12595 PF14883 Hypothetical glycosyl hydrolase family 13 CDG61_12595 PF01522 Polysaccharide deacetylase CDG61_12605 PF00563 EAL domain CDG61_12605 PF01590 GAF domain CDG61_12605 PF00990 Diguanylate cyclase, GGDEF domain CDG61_12605 PF00360 Phytochrome region CDG61_12610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG61_12615 PF07152 YaeQ protein CDG61_12620 PF02492 CobW/HypB/UreG, nucleotide-binding domain CDG61_12620 PF07683 Cobalamin synthesis protein cobW C-terminal domain CDG61_12630 PF01494 FAD binding domain CDG61_12645 PF00392 Bacterial regulatory proteins, gntR family CDG61_12645 PF07702 UTRA domain CDG61_12655 PF04909 Amidohydrolase CDG61_12660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_12660 PF03466 LysR substrate binding domain CDG61_12665 PF07690 Major Facilitator Superfamily CDG61_12670 PF00440 Bacterial regulatory proteins, tetR family CDG61_12675 PF03061 Thioesterase superfamily CDG61_12685 PF01734 Patatin-like phospholipase CDG61_12690 PF02417 Chromate transporter CDG61_12695 PF01235 Sodium:alanine symporter family CDG61_12700 PF03616 Sodium/glutamate symporter CDG61_12710 PF00881 Nitroreductase family CDG61_12715 PF07690 Major Facilitator Superfamily CDG61_12720 PF12805 FUSC-like inner membrane protein yccS CDG61_12730 PF00175 Oxidoreductase NAD-binding domain CDG61_12730 PF00667 FAD binding domain CDG61_12730 PF00258 Flavodoxin CDG61_12790 PF04304 Protein of unknown function (DUF454) CDG61_12805 PF01546 Peptidase family M20/M25/M40 CDG61_12805 PF07687 Peptidase dimerisation domain CDG61_12815 PF01584 CheW-like domain CDG61_12815 PF01627 Hpt domain CDG61_12815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_12815 PF02895 Signal transducing histidine kinase, homodimeric domain CDG61_12815 PF07194 P2 response regulator binding domain CDG61_12815 PF01627 Hpt domain CDG61_12815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_12815 PF07194 P2 response regulator binding domain CDG61_12815 PF01584 CheW-like domain CDG61_12815 PF02895 Signal transducing histidine kinase, homodimeric domain CDG61_12820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CDG61_12820 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CDG61_12825 PF01584 CheW-like domain CDG61_12830 PF00072 Response regulator receiver domain CDG61_12835 PF00072 Response regulator receiver domain CDG61_12845 PF13533 Biotin-lipoyl like CDG61_12850 PF00873 AcrB/AcrD/AcrF family CDG61_12855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDG61_12855 PF03129 Anticodon binding domain CDG61_12855 PF04073 Aminoacyl-tRNA editing domain CDG61_12880 PF00692 dUTPase CDG61_12900 PF10609 NUBPL iron-transfer P-loop NTPase CDG61_12930 PF01588 Putative tRNA binding domain CDG61_12930 PF09334 tRNA synthetases class I (M) CDG61_12965 PF13533 Biotin-lipoyl like CDG61_12970 PF00291 Pyridoxal-phosphate dependent enzyme CDG61_12980 PF05552 Conserved TM helix CDG61_12990 PF00970 Oxidoreductase FAD-binding domain CDG61_12990 PF00175 Oxidoreductase NAD-binding domain CDG61_12995 PF03466 LysR substrate binding domain CDG61_12995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_13010 PF00361 Proton-conducting membrane transporter CDG61_13015 PF00361 Proton-conducting membrane transporter CDG61_13020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDG61_13020 PF00361 Proton-conducting membrane transporter CDG61_13025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDG61_13030 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CDG61_13035 PF12838 4Fe-4S dicluster domain CDG61_13040 PF00146 NADH dehydrogenase CDG61_13045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CDG61_13045 PF00384 Molybdopterin oxidoreductase CDG61_13045 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDG61_13050 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CDG61_13050 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CDG61_13050 PF10531 SLBB domain CDG61_13060 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CDG61_13060 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CDG61_13065 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CDG61_13070 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CDG61_13080 PF00348 Polyprenyl synthetase CDG61_13085 PF04303 PrpF protein CDG61_13090 PF00324 Amino acid permease CDG61_13120 PF01507 Phosphoadenosine phosphosulfate reductase family CDG61_13125 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain CDG61_13125 PF06974 Protein of unknown function (DUF1298) CDG61_13130 PF00575 S1 RNA binding domain CDG61_13130 PF10150 Ribonuclease E/G family CDG61_13135 PF02545 Maf-like protein CDG61_13140 PF04093 rod shape-determining protein MreD CDG61_13145 PF04085 rod shape-determining protein MreC CDG61_13155 PF02686 Glu-tRNAGln amidotransferase C subunit CDG61_13160 PF01425 Amidase CDG61_13165 PF02637 GatB domain CDG61_13165 PF02934 GatB/GatE catalytic domain CDG61_13190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_13190 PF03466 LysR substrate binding domain CDG61_13215 PF05992 SbmA/BacA-like family CDG61_13225 PF03852 DNA mismatch endonuclease Vsr CDG61_13235 PF00145 C-5 cytosine-specific DNA methylase CDG61_13260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_13260 PF03466 LysR substrate binding domain CDG61_13270 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDG61_13275 PF01042 Endoribonuclease L-PSP CDG61_13280 PF00171 Aldehyde dehydrogenase family CDG61_13290 PF03737 Aldolase/RraA CDG61_13300 PF01613 Flavin reductase like domain CDG61_13305 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CDG61_13305 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CDG61_13320 PF00376 MerR family regulatory protein CDG61_13320 PF09278 MerR, DNA binding CDG61_13325 PF00403 Heavy-metal-associated domain CDG61_13350 PF00083 Sugar (and other) transporter CDG61_13355 PF00171 Aldehyde dehydrogenase family CDG61_13360 PF00158 Sigma-54 interaction domain CDG61_13365 PF00465 Iron-containing alcohol dehydrogenase CDG61_13370 PF07859 alpha/beta hydrolase fold CDG61_13375 PF00743 Flavin-binding monooxygenase-like CDG61_13380 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_13380 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CDG61_13380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_13385 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_13385 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CDG61_13385 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_13390 PF00296 Luciferase-like monooxygenase CDG61_13395 PF06505 Activator of aromatic catabolism CDG61_13395 PF02954 Bacterial regulatory protein, Fis family CDG61_13395 PF02830 V4R domain CDG61_13395 PF00158 Sigma-54 interaction domain CDG61_13400 PF06099 Phenol hydroxylase subunit CDG61_13405 PF02332 Methane/Phenol/Toluene Hydroxylase CDG61_13410 PF02406 MmoB/DmpM family CDG61_13415 PF02332 Methane/Phenol/Toluene Hydroxylase CDG61_13415 PF04945 YHS domain CDG61_13425 PF00111 2Fe-2S iron-sulfur cluster binding domain CDG61_13425 PF00970 Oxidoreductase FAD-binding domain CDG61_13425 PF00175 Oxidoreductase NAD-binding domain CDG61_13435 PF04444 Catechol dioxygenase N terminus CDG61_13435 PF00775 Dioxygenase CDG61_13440 PF01926 50S ribosome-binding GTPase CDG61_13445 PF01926 50S ribosome-binding GTPase CDG61_13450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_13450 PF03466 LysR substrate binding domain CDG61_13455 PF13378 Enolase C-terminal domain-like CDG61_13455 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CDG61_13460 PF02426 Muconolactone delta-isomerase CDG61_13465 PF01144 Coenzyme A transferase CDG61_13470 PF01144 Coenzyme A transferase CDG61_13475 PF02803 Thiolase, C-terminal domain CDG61_13475 PF00108 Thiolase, N-terminal domain CDG61_13480 PF12146 Serine aminopeptidase, S33 CDG61_13515 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CDG61_13530 PF01039 Carboxyl transferase domain CDG61_13535 PF06857 Malonate decarboxylase delta subunit (MdcD) CDG61_13540 PF16957 Malonate decarboxylase, alpha subunit, transporter CDG61_13555 PF07729 FCD domain CDG61_13555 PF00392 Bacterial regulatory proteins, gntR family CDG61_13560 PF00155 Aminotransferase class I and II CDG61_13560 PF00392 Bacterial regulatory proteins, gntR family CDG61_13565 PF03594 Benzoate membrane transport protein CDG61_13575 PF00155 Aminotransferase class I and II CDG61_13575 PF00392 Bacterial regulatory proteins, gntR family CDG61_13580 PF00596 Class II Aldolase and Adducin N-terminal domain CDG61_13585 PF00701 Dihydrodipicolinate synthetase family CDG61_13600 PF00884 Sulfatase CDG61_13605 PF03781 Sulfatase-modifying factor enzyme 1 CDG61_13615 PF02661 Fic/DOC family CDG61_13615 PF13784 Fic/DOC family N-terminal CDG61_13620 PF00925 GTP cyclohydrolase II CDG61_13625 PF00290 Tryptophan synthase alpha chain CDG61_13630 PF00291 Pyridoxal-phosphate dependent enzyme CDG61_13635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_13635 PF03466 LysR substrate binding domain CDG61_13650 PF00486 Transcriptional regulatory protein, C terminal CDG61_13650 PF00072 Response regulator receiver domain CDG61_13655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_13655 PF00512 His Kinase A (phospho-acceptor) domain CDG61_13655 PF08521 Two-component sensor kinase N-terminal CDG61_13695 PF09297 NADH pyrophosphatase zinc ribbon domain CDG61_13695 PF00293 NUDIX domain CDG61_13700 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CDG61_13715 PF00576 HIUase/Transthyretin family CDG61_13725 PF00072 Response regulator receiver domain CDG61_13725 PF00486 Transcriptional regulatory protein, C terminal CDG61_13730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_13730 PF00672 HAMP domain CDG61_13730 PF00512 His Kinase A (phospho-acceptor) domain CDG61_13735 PF00005 ABC transporter CDG61_13740 PF12704 MacB-like periplasmic core domain CDG61_13740 PF02687 FtsX-like permease family CDG61_13745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG61_13750 PF12008 Type I restriction and modification enzyme - subunit R C terminal CDG61_13750 PF18766 SWI2/SNF2 ATPase CDG61_13750 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDG61_13760 PF01420 Type I restriction modification DNA specificity domain CDG61_13765 PF02384 N-6 DNA Methylase CDG61_13765 PF12161 HsdM N-terminal domain CDG61_13830 PF00589 Phage integrase family CDG61_13830 PF13356 Arm DNA-binding domain CDG61_13840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDG61_13840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDG61_13845 PF07690 Major Facilitator Superfamily CDG61_13850 PF00529 HlyD membrane-fusion protein of T1SS CDG61_13850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG61_13855 PF03061 Thioesterase superfamily CDG61_13860 PF00490 Delta-aminolevulinic acid dehydratase CDG61_13865 PF01266 FAD dependent oxidoreductase CDG61_13870 PF01370 NAD dependent epimerase/dehydratase family CDG61_13870 PF08338 Domain of unknown function (DUF1731) CDG61_13900 PF00694 Aconitase C-terminal domain CDG61_13900 PF00330 Aconitase family (aconitate hydratase) CDG61_13910 PF01571 Aminomethyltransferase folate-binding domain CDG61_13930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDG61_13935 PF04966 Carbohydrate-selective porin, OprB family CDG61_13940 PF06827 Zinc finger found in FPG and IleRS CDG61_13940 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDG61_13940 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDG61_13955 PF01741 Large-conductance mechanosensitive channel, MscL CDG61_13970 PF00860 Permease family CDG61_13975 PF08468 Methyltransferase small domain N-terminal CDG61_13975 PF05175 Methyltransferase small domain CDG61_13980 PF00324 Amino acid permease CDG61_14020 PF04715 Anthranilate synthase component I, N terminal region CDG61_14020 PF00425 chorismate binding enzyme CDG61_14025 PF00155 Aminotransferase class I and II CDG61_14030 PF00815 Histidinol dehydrogenase CDG61_14040 PF01634 ATP phosphoribosyltransferase CDG61_14045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDG61_14050 PF01722 BolA-like protein CDG61_14055 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDG61_14060 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDG61_14060 PF04963 Sigma-54 factor, core binding domain CDG61_14060 PF04552 Sigma-54, DNA binding domain CDG61_14095 PF13689 YfiR/HmsC-like CDG61_14100 PF17152 Periplasmic sensor domain CDG61_14100 PF00990 Diguanylate cyclase, GGDEF domain CDG61_14105 PF00691 OmpA family CDG61_14105 PF05736 OprF membrane domain CDG61_14130 PF02445 Quinolinate synthetase A protein CDG61_14135 PF01960 ArgJ family CDG61_14145 PF07516 SecA Wing and Scaffold domain CDG61_14145 PF02810 SEC-C motif CDG61_14145 PF07517 SecA DEAD-like domain CDG61_14145 PF01043 SecA preprotein cross-linking domain CDG61_14150 PF00578 AhpC/TSA family CDG61_14150 PF10417 C-terminal domain of 1-Cys peroxiredoxin CDG61_14155 PF00753 Metallo-beta-lactamase superfamily CDG61_14170 PF02875 Mur ligase family, glutamate ligase domain CDG61_14170 PF08245 Mur ligase middle domain CDG61_14175 PF01039 Carboxyl transferase domain CDG61_14180 PF00290 Tryptophan synthase alpha chain CDG61_14185 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CDG61_14185 PF12833 Helix-turn-helix domain CDG61_14200 PF11893 Domain of unknown function (DUF3413) CDG61_14200 PF00884 Sulfatase CDG61_14215 PF00291 Pyridoxal-phosphate dependent enzyme CDG61_14220 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CDG61_14230 PF07715 TonB-dependent Receptor Plug Domain CDG61_14230 PF00593 TonB dependent receptor CDG61_14235 PF01923 Cobalamin adenosyltransferase CDG61_14255 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CDG61_14265 PF04237 YjbR CDG61_14270 PF00486 Transcriptional regulatory protein, C terminal CDG61_14270 PF00072 Response regulator receiver domain CDG61_14275 PF00672 HAMP domain CDG61_14275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_14275 PF00512 His Kinase A (phospho-acceptor) domain CDG61_14290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_14290 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_14290 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG61_14290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_14295 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_14295 PF12806 Acetyl-CoA dehydrogenase C-terminal like CDG61_14295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_14295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CDG61_14315 PF06146 Phosphate-starvation-inducible E CDG61_14335 PF07715 TonB-dependent Receptor Plug Domain CDG61_14335 PF00593 TonB dependent receptor CDG61_14345 PF00152 tRNA synthetases class II (D, K and N) CDG61_14345 PF02938 GAD domain CDG61_14345 PF01336 OB-fold nucleic acid binding domain CDG61_14360 PF00535 Glycosyl transferase family 2 CDG61_14370 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDG61_14375 PF00483 Nucleotidyl transferase CDG61_14380 PF04321 RmlD substrate binding domain CDG61_14385 PF16363 GDP-mannose 4,6 dehydratase CDG61_14400 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CDG61_14410 PF11380 Stealth protein CR2, conserved region 2 CDG61_14410 PF17101 Stealth protein CR1, conserved region 1 CDG61_14410 PF17102 Stealth protein CR3, conserved region 3 CDG61_14410 PF17103 Stealth protein CR4, conserved region 4 CDG61_14420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG61_14420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG61_14425 PF01370 NAD dependent epimerase/dehydratase family CDG61_14430 PF01063 Amino-transferase class IV CDG61_14435 PF08335 GlnD PII-uridylyltransferase CDG61_14435 PF03710 Glutamate-ammonia ligase adenylyltransferase CDG61_14440 PF09456 RcsC Alpha-Beta-Loop (ABL) CDG61_14440 PF00512 His Kinase A (phospho-acceptor) domain CDG61_14440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_14440 PF00072 Response regulator receiver domain CDG61_14505 PF00589 Phage integrase family CDG61_14505 PF13356 Arm DNA-binding domain CDG61_14515 PF02547 Queuosine biosynthesis protein CDG61_14525 PF04011 LemA family CDG61_14530 PF01702 Queuine tRNA-ribosyltransferase CDG61_14535 PF02699 Preprotein translocase subunit CDG61_14540 PF02355 Protein export membrane protein CDG61_14540 PF07549 SecD/SecF GG Motif CDG61_14540 PF13721 SecD export protein N-terminal TM region CDG61_14545 PF07549 SecD/SecF GG Motif CDG61_14545 PF02355 Protein export membrane protein CDG61_14555 PF13291 ACT domain CDG61_14555 PF04607 Region found in RelA / SpoT proteins CDG61_14555 PF02824 TGS domain CDG61_14560 PF05958 tRNA (Uracil-5-)-methyltransferase CDG61_14570 PF00291 Pyridoxal-phosphate dependent enzyme CDG61_14575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_14575 PF00672 HAMP domain CDG61_14575 PF00072 Response regulator receiver domain CDG61_14575 PF00512 His Kinase A (phospho-acceptor) domain CDG61_14575 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CDG61_14575 PF01627 Hpt domain CDG61_14580 PF00378 Enoyl-CoA hydratase/isomerase CDG61_14585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDG61_14585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDG61_14590 PF01261 Xylose isomerase-like TIM barrel CDG61_14600 PF00909 Ammonium Transporter Family CDG61_14600 PF00672 HAMP domain CDG61_14610 PF00909 Ammonium Transporter Family CDG61_14610 PF00672 HAMP domain CDG61_14615 PF02233 NAD(P) transhydrogenase beta subunit CDG61_14620 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CDG61_14625 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CDG61_14625 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CDG61_14640 PF00376 MerR family regulatory protein CDG61_14640 PF09278 MerR, DNA binding CDG61_14650 PF07690 Major Facilitator Superfamily CDG61_14670 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_14675 PF03358 NADPH-dependent FMN reductase CDG61_14680 PF01758 Sodium Bile acid symporter family CDG61_14690 PF01022 Bacterial regulatory protein, arsR family CDG61_14695 PF03960 ArsC family CDG61_14700 PF07664 Ferrous iron transport protein B C terminus CDG61_14700 PF02421 Ferrous iron transport protein B CDG61_14700 PF07670 Nucleoside recognition CDG61_14710 PF01545 Cation efflux family CDG61_14715 PF13411 MerR HTH family regulatory protein CDG61_14780 PF00589 Phage integrase family CDG61_14785 PF01207 Dihydrouridine synthase (Dus) CDG61_14810 PF00899 ThiF family CDG61_14820 PF00694 Aconitase C-terminal domain CDG61_14820 PF00330 Aconitase family (aconitate hydratase) CDG61_14825 PF01026 TatD related DNase CDG61_14840 PF03144 Elongation factor Tu domain 2 CDG61_14840 PF16658 Class II release factor RF3, C-terminal domain CDG61_14840 PF00009 Elongation factor Tu GTP binding domain CDG61_14845 PF03707 Bacterial signalling protein N terminal repeat CDG61_14845 PF00563 EAL domain CDG61_14845 PF00990 Diguanylate cyclase, GGDEF domain CDG61_14850 PF00595 PDZ domain CDG61_14850 PF11818 C-terminal domain of tail specific protease (DUF3340) CDG61_14850 PF03572 Peptidase family S41 CDG61_14850 PF17804 Tail specific protease N-terminal domain CDG61_14855 PF00933 Glycosyl hydrolase family 3 N terminal domain CDG61_14875 PF03358 NADPH-dependent FMN reductase CDG61_14880 PF03631 Virulence factor BrkB CDG61_14885 PF00892 EamA-like transporter family CDG61_14900 PF01618 MotA/TolQ/ExbB proton channel family CDG61_14910 PF00551 Formyl transferase CDG61_14910 PF01842 ACT domain CDG61_14915 PF08360 QacR-like protein, C-terminal region CDG61_14915 PF00440 Bacterial regulatory proteins, tetR family CDG61_14920 PF00171 Aldehyde dehydrogenase family CDG61_14925 PF00830 Ribosomal L28 family CDG61_14930 PF00471 Ribosomal protein L33 CDG61_14935 PF02254 TrkA-N domain CDG61_14935 PF00999 Sodium/hydrogen exchanger family CDG61_14955 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CDG61_14960 PF00580 UvrD/REP helicase N-terminal domain CDG61_14960 PF13361 UvrD-like helicase C-terminal domain CDG61_14965 PF02595 Glycerate kinase family CDG61_14985 PF09297 NADH pyrophosphatase zinc ribbon domain CDG61_14985 PF00293 NUDIX domain CDG61_14990 PF01131 DNA topoisomerase CDG61_14990 PF01751 Toprim domain CDG61_14990 PF01396 Topoisomerase DNA binding C4 zinc finger CDG61_14990 PF08272 Topoisomerase I zinc-ribbon-like CDG61_15000 PF01638 HxlR-like helix-turn-helix CDG61_15015 PF04102 SlyX CDG61_15025 PF03279 Bacterial lipid A biosynthesis acyltransferase CDG61_15045 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG61_15045 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDG61_15065 PF01416 tRNA pseudouridine synthase CDG61_15075 PF01176 Translation initiation factor 1A / IF-1 CDG61_15085 PF00180 Isocitrate/isopropylmalate dehydrogenase CDG61_15095 PF00694 Aconitase C-terminal domain CDG61_15100 PF00330 Aconitase family (aconitate hydratase) CDG61_15120 PF03466 LysR substrate binding domain CDG61_15120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_15135 PF00293 NUDIX domain CDG61_15140 PF05524 PEP-utilising enzyme, N-terminal CDG61_15140 PF01590 GAF domain CDG61_15140 PF00391 PEP-utilising enzyme, mobile domain CDG61_15140 PF02896 PEP-utilising enzyme, TIM barrel domain CDG61_15160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CDG61_15160 PF02770 Acyl-CoA dehydrogenase, middle domain CDG61_15160 PF18158 Adaptive response protein AidB N-terminal domain CDG61_15190 PF00141 Peroxidase CDG61_15195 PF12706 Beta-lactamase superfamily domain CDG61_15205 PF13673 Acetyltransferase (GNAT) domain CDG61_15215 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_15215 PF14759 Reductase C-terminal CDG61_15220 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CDG61_15225 PF00106 short chain dehydrogenase CDG61_15230 PF00355 Rieske [2Fe-2S] domain CDG61_15235 PF00866 Ring hydroxylating beta subunit CDG61_15240 PF00355 Rieske [2Fe-2S] domain CDG61_15240 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CDG61_15245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDG61_15245 PF03466 LysR substrate binding domain CDG61_15255 PF00561 alpha/beta hydrolase fold CDG61_15260 PF03573 outer membrane porin, OprD family CDG61_15265 PF00682 HMGL-like CDG61_15265 PF07836 DmpG-like communication domain CDG61_15270 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CDG61_15270 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDG61_15275 PF01557 Fumarylacetoacetate (FAA) hydrolase family CDG61_15280 PF13419 Haloacid dehalogenase-like hydrolase CDG61_15285 PF00849 RNA pseudouridylate synthase CDG61_15285 PF01479 S4 domain CDG61_15295 PF12111 Polyribonucleotide phosphorylase C terminal CDG61_15295 PF10150 Ribonuclease E/G family CDG61_15295 PF00575 S1 RNA binding domain CDG61_15300 PF00501 AMP-binding enzyme CDG61_15300 PF13193 AMP-binding enzyme C-terminal domain CDG61_15330 PF04024 PspC domain CDG61_15335 PF00571 CBS domain CDG61_15350 PF02091 Glycyl-tRNA synthetase alpha subunit CDG61_15355 PF05746 DALR anticodon binding domain CDG61_15355 PF02092 Glycyl-tRNA synthetase beta subunit CDG61_15390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDG61_15390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDG61_15430 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CDG61_15430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDG61_15440 PF03884 DNA gyrase inhibitor YacG CDG61_15445 PF00753 Metallo-beta-lactamase superfamily CDG61_15450 PF00762 Ferrochelatase CDG61_15460 PF01177 Asp/Glu/Hydantoin racemase CDG61_15475 PF01206 Sulfurtransferase TusA CDG61_15480 PF00571 CBS domain CDG61_15480 PF03471 Transporter associated domain CDG61_15485 PF00795 Carbon-nitrogen hydrolase CDG61_15500 PF07963 Prokaryotic N-terminal methylation motif CDG61_15500 PF08334 Type II secretion system (T2SS), protein G CDG61_15505 PF00482 Type II secretion system (T2SS), protein F CDG61_15510 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDG61_15510 PF00271 Helicase conserved C-terminal domain CDG61_15510 PF00270 DEAD/DEAH box helicase CDG61_15510 PF17764 3′ DNA-binding domain (3′BD) CDG61_15510 PF18074 Primosomal protein N C-terminal domain CDG61_15515 PF02254 TrkA-N domain CDG61_15515 PF00999 Sodium/hydrogen exchanger family CDG61_15520 PF01430 Hsp33 protein CDG61_15540 PF01556 DnaJ C terminal domain CDG61_15540 PF00226 DnaJ domain CDG61_15555 PF01544 CorA-like Mg2+ transporter protein CDG61_15560 PF00013 KH domain CDG61_15560 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDG61_15560 PF01138 3' exoribonuclease family, domain 1 CDG61_15560 PF03725 3' exoribonuclease family, domain 2 CDG61_15560 PF00575 S1 RNA binding domain CDG61_15565 PF00312 Ribosomal protein S15 CDG61_15575 PF13538 UvrD-like helicase C-terminal domain CDG61_15580 PF13361 UvrD-like helicase C-terminal domain CDG61_15580 PF00580 UvrD/REP helicase N-terminal domain CDG61_15580 PF12705 PD-(D/E)XK nuclease superfamily CDG61_15585 PF17946 RecC C-terminal domain CDG61_15595 PF03976 Polyphosphate kinase 2 (PPK2) CDG61_15605 PF01209 ubiE/COQ5 methyltransferase family CDG61_15615 PF03109 ABC1 family CDG61_15635 PF01494 FAD binding domain CDG61_15645 PF01502 Phosphoribosyl-AMP cyclohydrolase CDG61_15655 PF00005 ABC transporter CDG61_15660 PF00361 Proton-conducting membrane transporter CDG61_15660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CDG61_15660 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CDG61_15660 PF13244 Domain of unknown function (DUF4040) CDG61_15665 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CDG61_15670 PF00361 Proton-conducting membrane transporter CDG61_15680 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CDG61_15690 PF02033 Ribosome-binding factor A CDG61_15695 PF04760 Translation initiation factor IF-2, N-terminal region CDG61_15695 PF08364 Bacterial translation initiation factor IF-2 associated region CDG61_15695 PF00009 Elongation factor Tu GTP binding domain CDG61_15695 PF11987 Translation-initiation factor 2 CDG61_15700 PF13184 NusA-like KH domain CDG61_15700 PF08529 NusA N-terminal domain CDG61_15700 PF00575 S1 RNA binding domain CDG61_15705 PF02576 RimP N-terminal domain CDG61_15705 PF17384 RimP C-terminal SH3 domain CDG61_15730 PF03840 Preprotein translocase SecG subunit CDG61_15735 PF00121 Triosephosphate isomerase CDG61_15740 PF00437 Type II/IV secretion system protein CDG61_15740 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CDG61_15745 PF00482 Type II secretion system (T2SS), protein F CDG61_15750 PF01478 Type IV leader peptidase family CDG61_15750 PF06750 Bacterial Peptidase A24 N-terminal domain CDG61_15755 PF01121 Dephospho-CoA kinase CDG61_15765 PF00588 SpoU rRNA Methylase family CDG61_15765 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDG61_15770 PF06865 Pyrimidine/purine nucleoside phosphorylase CDG61_15780 PF02463 RecF/RecN/SMC N terminal domain CDG61_15785 PF02622 Uncharacterized ACR, COG1678 CDG61_15790 PF03652 Holliday junction resolvase CDG61_15800 PF13533 Biotin-lipoyl like CDG61_15810 PF04632 Fusaric acid resistance protein family CDG61_15820 PF02525 Flavodoxin-like fold CDG61_15830 PF00664 ABC transporter transmembrane region CDG61_15830 PF00005 ABC transporter CDG61_15835 PF01066 CDP-alcohol phosphatidyltransferase CDG61_15845 PF01541 GIY-YIG catalytic domain CDG61_15845 PF02151 UvrB/uvrC motif CDG61_15845 PF08459 UvrC Helix-hairpin-helix N-terminal CDG61_15860 PF10431 C-terminal, D2-small domain, of ClpB protein CDG61_15860 PF07724 AAA domain (Cdc48 subfamily) CDG61_15885 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CDG61_15885 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CDG61_15885 PF00378 Enoyl-CoA hydratase/isomerase CDG61_15890 PF00108 Thiolase, N-terminal domain CDG61_15890 PF02803 Thiolase, C-terminal domain CDG61_15910 PF03848 Tellurite resistance protein TehB CDG61_15910 PF09313 Domain of unknown function (DUF1971) CDG61_15930 PF01323 DSBA-like thioredoxin domain CDG61_15955 PF00183 Hsp90 protein CDG61_15955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_15975 PF13726 Na+-H+ antiporter family CDG61_15975 PF03553 Na+/H+ antiporter family CDG61_15980 PF00561 alpha/beta hydrolase fold CDG61_15995 PF04997 RNA polymerase Rpb1, domain 1 CDG61_15995 PF00623 RNA polymerase Rpb1, domain 2 CDG61_15995 PF04983 RNA polymerase Rpb1, domain 3 CDG61_15995 PF04998 RNA polymerase Rpb1, domain 5 CDG61_15995 PF05000 RNA polymerase Rpb1, domain 4 CDG61_16000 PF04560 RNA polymerase Rpb2, domain 7 CDG61_16000 PF04565 RNA polymerase Rpb2, domain 3 CDG61_16000 PF04563 RNA polymerase beta subunit CDG61_16000 PF04561 RNA polymerase Rpb2, domain 2 CDG61_16000 PF10385 RNA polymerase beta subunit external 1 domain CDG61_16000 PF00562 RNA polymerase Rpb2, domain 6 CDG61_16005 PF00542 Ribosomal protein L7/L12 C-terminal domain CDG61_16005 PF16320 Ribosomal protein L7/L12 dimerisation domain CDG61_16010 PF00466 Ribosomal protein L10 CDG61_16015 PF00687 Ribosomal protein L1p/L10e family CDG61_16020 PF00298 Ribosomal protein L11, RNA binding domain CDG61_16020 PF03946 Ribosomal protein L11, N-terminal domain CDG61_16025 PF00467 KOW motif CDG61_16025 PF02357 Transcription termination factor nusG CDG61_16030 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDG61_16040 PF03143 Elongation factor Tu C-terminal domain CDG61_16040 PF03144 Elongation factor Tu domain 2 CDG61_16040 PF00009 Elongation factor Tu GTP binding domain CDG61_16065 PF04715 Anthranilate synthase component I, N terminal region CDG61_16065 PF00425 chorismate binding enzyme CDG61_16070 PF13419 Haloacid dehalogenase-like hydrolase CDG61_16075 PF16697 Inner membrane component of T3SS, cytoplasmic domain CDG61_16080 PF03958 Bacterial type II/III secretion system short domain CDG61_16080 PF00263 Bacterial type II and III secretion system protein CDG61_16095 PF00816 H-NS histone family CDG61_16120 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CDG61_16120 PF03900 Porphobilinogen deaminase, C-terminal domain CDG61_16125 PF00072 Response regulator receiver domain CDG61_16125 PF04397 LytTr DNA-binding domain CDG61_16130 PF06580 Histidine kinase CDG61_16130 PF07694 5TMR of 5TMR-LYT CDG61_16130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_16135 PF00206 Lyase CDG61_16135 PF14698 Argininosuccinate lyase C-terminal CDG61_16140 PF04362 Bacterial Fe(2+) trafficking CDG61_16145 PF01895 PhoU domain CDG61_16150 PF02321 Outer membrane efflux protein CDG61_16160 PF01964 Radical SAM ThiC family CDG61_16160 PF13667 ThiC-associated domain CDG61_16165 PF00293 NUDIX domain CDG61_16170 PF00149 Calcineurin-like phosphoesterase CDG61_16175 PF01258 Prokaryotic dksA/traR C4-type zinc finger CDG61_16180 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDG61_16190 PF01098 Cell cycle protein CDG61_16195 PF08245 Mur ligase middle domain CDG61_16195 PF02875 Mur ligase family, glutamate ligase domain CDG61_16205 PF07664 Ferrous iron transport protein B C terminus CDG61_16205 PF02421 Ferrous iron transport protein B CDG61_16205 PF07670 Nucleoside recognition CDG61_16215 PF02899 Phage integrase, N-terminal SAM-like domain CDG61_16215 PF00589 Phage integrase family CDG61_16220 PF13098 Thioredoxin-like domain CDG61_16220 PF10411 Disulfide bond isomerase protein N-terminus CDG61_16225 PF01842 ACT domain CDG61_16225 PF00742 Homoserine dehydrogenase CDG61_16225 PF03447 Homoserine dehydrogenase, NAD binding domain CDG61_16230 PF00291 Pyridoxal-phosphate dependent enzyme CDG61_16235 PF00768 D-alanyl-D-alanine carboxypeptidase CDG61_16240 PF00072 Response regulator receiver domain CDG61_16240 PF00196 Bacterial regulatory proteins, luxR family CDG61_16245 PF00512 His Kinase A (phospho-acceptor) domain CDG61_16245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDG61_16250 PF00072 Response regulator receiver domain CDG61_16250 PF00158 Sigma-54 interaction domain CDG61_16250 PF02954 Bacterial regulatory protein, Fis family CDG61_16255 PF03572 Peptidase family S41 CDG61_16255 PF01471 Putative peptidoglycan binding domain CDG61_16255 PF17820 PDZ domain CDG61_16260 PF01676 Metalloenzyme superfamily CDG61_16260 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CDG61_16265 PF03739 Lipopolysaccharide export system permease LptF/LptG CDG61_16270 PF03739 Lipopolysaccharide export system permease LptF/LptG CDG61_16275 PF00883 Cytosol aminopeptidase family, catalytic domain CDG61_16275 PF02789 Cytosol aminopeptidase family, N-terminal domain CDG61_16295 PF09335 SNARE associated Golgi protein CDG61_16300 PF00677 Lumazine binding domain CDG61_16305 PF02086 D12 class N6 adenine-specific DNA methyltransferase CDG61_16310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDG61_16310 PF01872 RibD C-terminal domain CDG61_16315 PF03477 ATP cone domain CDG61_16320 PF00909 Ammonium Transporter Family CDG61_16325 PF00543 Nitrogen regulatory protein P-II CDG61_16335 PF13335 Magnesium chelatase, subunit ChlI C-terminal CDG61_16335 PF01078 Magnesium chelatase, subunit ChlI CDG61_16350 PF03573 outer membrane porin, OprD family CDG61_16355 PF00719 Inorganic pyrophosphatase CDG61_16370 PF13193 AMP-binding enzyme C-terminal domain CDG61_16370 PF00501 AMP-binding enzyme CDG61_16375 PF00521 DNA gyrase/topoisomerase IV, subunit A CDG61_16375 PF03989 DNA gyrase C-terminal domain, beta-propeller CDG61_16395 PF07690 Major Facilitator Superfamily CDG61_16400 PF03458 UPF0126 domain CDG61_16405 PF02810 SEC-C motif CDG61_16430 PF03741 Integral membrane protein TerC family CDG61_16430 PF03471 Transporter associated domain CDG61_16435 PF03641 Possible lysine decarboxylase CDG61_16450 PF07690 Major Facilitator Superfamily CDG61_16465 PF00817 impB/mucB/samB family CDG61_16465 PF11799 impB/mucB/samB family C-terminal domain CDG61_16465 PF11798 IMS family HHH motif CDG61_16480 PF11842 Domain of unknown function (DUF3362) CDG61_16480 PF04055 Radical SAM superfamily CDG61_16480 PF08497 Radical SAM N-terminal CDG61_16495 PF07690 Major Facilitator Superfamily CDG61_16515 PF03358 NADPH-dependent FMN reductase CDG61_16555 PF00440 Bacterial regulatory proteins, tetR family CDG61_16580 PF01327 Polypeptide deformylase CDG61_16590 PF02481 DNA recombination-mediator protein A CDG61_16590 PF17782 DprA winged helix domain CDG61_16595 PF01300 Telomere recombination CDG61_16600 PF00892 EamA-like transporter family CDG61_16605 PF00440 Bacterial regulatory proteins, tetR family CDG61_16610 PF07690 Major Facilitator Superfamily CDG61_16620 PF00255 Glutathione peroxidase CDG61_16635 PF00106 short chain dehydrogenase CDG61_16640 PF00743 Flavin-binding monooxygenase-like CDG61_16650 PF05726 Pirin C-terminal cupin domain CDG61_16650 PF02678 Pirin CDG61_16660 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_16670 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDG61_16675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG61_16675 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDG61_16680 PF00231 ATP synthase CDG61_16685 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDG61_16685 PF00306 ATP synthase alpha/beta chain, C terminal domain CDG61_16685 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDG61_16690 PF00213 ATP synthase delta (OSCP) subunit CDG61_16695 PF00430 ATP synthase B/B' CF(0) CDG61_16700 PF00137 ATP synthase subunit C CDG61_16705 PF00119 ATP synthase A chain CDG61_16725 PF00005 ABC transporter CDG61_16730 PF00950 ABC 3 transport family CDG61_16740 PF01810 LysE type translocator CDG61_16745 PF04261 Dyp-type peroxidase family CDG61_16760 PF04717 Type VI secretion system, phage-baseplate injector CDG61_16765 PF03949 Malic enzyme, NAD binding domain CDG61_16765 PF00390 Malic enzyme, N-terminal domain CDG61_16770 PF00750 tRNA synthetases class I (R) CDG61_16770 PF05746 DALR anticodon binding domain CDG61_16770 PF03485 Arginyl tRNA synthetase N terminal domain CDG61_16780 PF00892 EamA-like transporter family CDG61_16805 PF02678 Pirin CDG61_16805 PF05726 Pirin C-terminal cupin domain CDG61_16820 PF03551 Transcriptional regulator PadR-like family CDG61_16825 PF14338 Mrr N-terminal domain CDG61_16825 PF04471 Restriction endonuclease CDG61_16830 PF02540 NAD synthase CDG61_16830 PF00958 GMP synthase C terminal domain CDG61_16830 PF00117 Glutamine amidotransferase class-I CDG61_16835 PF07681 DoxX CDG61_16840 PF09335 SNARE associated Golgi protein CDG61_16855 PF13614 AAA domain CDG61_16865 PF01722 BolA-like protein CDG61_16880 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CDG61_16880 PF00925 GTP cyclohydrolase II CDG61_16885 PF00885 6,7-dimethyl-8-ribityllumazine synthase CDG61_16890 PF01029 NusB family CDG61_16895 PF02769 AIR synthase related protein, C-terminal domain CDG61_16895 PF00586 AIR synthase related protein, N-terminal domain CDG61_16900 PF04608 Phosphatidylglycerophosphatase A CDG61_16905 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_16905 PF12804 MobA-like NTP transferase domain CDG61_16905 PF14602 Hexapeptide repeat of succinyl-transferase CDG61_16910 PF01380 SIS domain CDG61_16915 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDG61_16915 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDG61_16915 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDG61_16915 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDG61_16920 PF00342 Phosphoglucose isomerase CDG61_16925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG61_16925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDG61_16925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG61_16930 PF00483 Nucleotidyl transferase CDG61_16935 PF02719 Polysaccharide biosynthesis protein CDG61_16940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDG61_16945 PF17836 PglD N-terminal domain CDG61_16945 PF14602 Hexapeptide repeat of succinyl-transferase CDG61_16945 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_16950 PF02397 Bacterial sugar transferase CDG61_16960 PF00534 Glycosyl transferases group 1 CDG61_16960 PF13439 Glycosyltransferase Family 4 CDG61_16980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CDG61_16985 PF00132 Bacterial transferase hexapeptide (six repeats) CDG61_16990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDG61_16990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDG61_16995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CDG61_16995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDG61_16995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDG61_17000 PF02563 Polysaccharide biosynthesis/export protein CDG61_17000 PF10531 SLBB domain CDG61_17005 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDG61_17010 PF02706 Chain length determinant protein CDG61_17010 PF13614 AAA domain CDG61_17010 PF13807 G-rich domain on putative tyrosine kinase CDG61_17020 PF05173 Dihydrodipicolinate reductase, C-terminus CDG61_17020 PF01113 Dihydrodipicolinate reductase, N-terminus CDG61_17030 PF00226 DnaJ domain CDG61_17030 PF00684 DnaJ central domain CDG61_17030 PF01556 DnaJ C terminal domain CDG61_17040 PF00873 AcrB/AcrD/AcrF family CDG61_17045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CDG61_17050 PF00440 Bacterial regulatory proteins, tetR family CDG61_17055 PF00487 Fatty acid desaturase CDG61_17060 PF00175 Oxidoreductase NAD-binding domain CDG61_17060 PF00970 Oxidoreductase FAD-binding domain CDG61_17060 PF00042 Globin CDG61_17065 PF00440 Bacterial regulatory proteins, tetR family CDG61_17070 PF01323 DSBA-like thioredoxin domain CDG61_17080 PF13419 Haloacid dehalogenase-like hydrolase CDG61_17085 PF00106 short chain dehydrogenase CDG61_17105 PF00696 Amino acid kinase family CDG61_17105 PF00583 Acetyltransferase (GNAT) family CDG61_17110 PF09084 NMT1/THI5 like CDG61_17115 PF09084 NMT1/THI5 like CDG61_17120 PF00296 Luciferase-like monooxygenase CDG61_17125 PF00528 Binding-protein-dependent transport system inner membrane component CDG61_17130 PF00005 ABC transporter CDG61_17135 PF00440 Bacterial regulatory proteins, tetR family CDG61_17135 PF08362 YcdC-like protein, C-terminal region CDG61_17150 PF01687 Riboflavin kinase CDG61_17150 PF06574 FAD synthetase CDG61_17155 PF00133 tRNA synthetases class I (I, L, M and V) CDG61_17155 PF08264 Anticodon-binding domain of tRNA CDG61_17155 PF06827 Zinc finger found in FPG and IleRS CDG61_17160 PF01252 Signal peptidase (SPase) II CDG61_17165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDG61_17190 PF07690 Major Facilitator Superfamily CDG61_17220 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDG61_17230 PF07859 alpha/beta hydrolase fold CDG61_17245 PF01025 GrpE CDG61_17250 PF00012 Hsp70 protein CDG61_17280 PF13406 Transglycosylase SLT domain CDG61_17285 PF02222 ATP-grasp domain CDG61_17285 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDG61_17290 PF00731 AIR carboxylase CDG61_17305 PF01225 Mur ligase family, catalytic domain CDG61_17305 PF02875 Mur ligase family, glutamate ligase domain CDG61_17305 PF08245 Mur ligase middle domain CDG61_17320 PF14542 GCN5-related N-acetyl-transferase CDG61_17325 PF14542 GCN5-related N-acetyl-transferase CDG61_17330 PF03741 Integral membrane protein TerC family CDG61_17345 PF03738 Glutathionylspermidine synthase preATP-grasp CDG61_17355 PF01979 Amidohydrolase family CDG61_17360 PF00156 Phosphoribosyl transferase domain CDG61_17370 PF13098 Thioredoxin-like domain CDG61_17370 PF10411 Disulfide bond isomerase protein N-terminus CDG61_17375 PF01545 Cation efflux family CDG61_17380 PF02583 Metal-sensitive transcriptional repressor CDG61_17385 PF04076 Bacterial OB fold (BOF) protein CDG61_17390 PF10396 GTP-binding protein TrmE N-terminus CDG61_17390 PF12631 MnmE helical domain CDG61_17390 PF01926 50S ribosome-binding GTPase CDG61_17395 PF02096 60Kd inner membrane protein CDG61_17395 PF14849 YidC periplasmic domain CDG61_17400 PF01809 Putative membrane protein insertion efficiency factor CDG61_17405 PF00825 Ribonuclease P CDG61_17410 PF00468 Ribosomal protein L34