locus-tag class description GJD93_00005 PF18766 SWI2/SNF2 ATPase GJD93_00005 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) GJD93_00005 PF11867 Domain of unknown function (DUF3387) GJD93_00025 PF13614 AAA domain GJD93_00035 PF03432 Relaxase/Mobilisation nuclease domain GJD93_00050 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system GJD93_00075 PF01661 Macro domain GJD93_00100 PF04221 RelB antitoxin GJD93_00115 PF00394 Multicopper oxidase GJD93_00115 PF07732 Multicopper oxidase GJD93_00115 PF07731 Multicopper oxidase GJD93_00135 PF00873 AcrB/AcrD/AcrF family GJD93_00140 PF01545 Cation efflux family GJD93_00145 PF00239 Resolvase, N terminal domain GJD93_00145 PF02796 Helix-turn-helix domain of resolvase GJD93_00160 PF00753 Metallo-beta-lactamase superfamily GJD93_00165 PF00665 Integrase core domain GJD93_00165 PF13936 Helix-turn-helix domain GJD93_00170 PF01636 Phosphotransferase enzyme family GJD93_00180 PF13610 DDE domain GJD93_00190 PF02522 Aminoglycoside 3-N-acetyltransferase GJD93_00200 PF02796 Helix-turn-helix domain of resolvase GJD93_00200 PF00239 Resolvase, N terminal domain GJD93_00205 PF13742 OB-fold nucleic acid binding domain GJD93_00205 PF02601 Exonuclease VII, large subunit GJD93_00215 PF13438 Domain of unknown function (DUF4113) GJD93_00215 PF00817 impB/mucB/samB family GJD93_00215 PF11799 impB/mucB/samB family C-terminal domain GJD93_00220 PF00717 Peptidase S24-like GJD93_00225 PF02384 N-6 DNA Methylase GJD93_00230 PF01420 Type I restriction modification DNA specificity domain GJD93_00245 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJD93_00245 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJD93_00245 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJD93_00245 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJD93_00255 PF01636 Phosphotransferase enzyme family GJD93_00275 PF04463 Protein of unknown function (DUF523) GJD93_00315 PF01545 Cation efflux family GJD93_00330 PF00589 Phage integrase family GJD93_00330 PF13356 Arm DNA-binding domain GJD93_00370 PF05860 haemagglutination activity domain GJD93_00370 PF13332 Hemagglutinin repeat GJD93_00370 PF05594 Haemagluttinin repeat GJD93_00370 PF13018 Extended Signal Peptide of Type V secretion system GJD93_00370 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain GJD93_00375 PF13332 Hemagglutinin repeat GJD93_00375 PF05860 haemagglutination activity domain GJD93_00375 PF04829 Pre-toxin domain with VENN motif GJD93_00375 PF13018 Extended Signal Peptide of Type V secretion system GJD93_00380 PF08479 POTRA domain, ShlB-type GJD93_00380 PF17287 POTRA domain GJD93_00380 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB GJD93_00395 PF13173 AAA domain GJD93_00395 PF13635 Domain of unknown function (DUF4143) GJD93_00415 PF13005 zinc-finger binding domain of transposase IS66 GJD93_00415 PF13007 Transposase C of IS166 homeodomain GJD93_00415 PF13817 IS66 C-terminal element GJD93_00415 PF03050 Transposase IS66 family GJD93_00480 PF02810 SEC-C motif GJD93_00505 PF08019 Phosphoethanolamine transferase EptA/EptB GJD93_00505 PF00884 Sulfatase GJD93_00510 PF08521 Two-component sensor kinase N-terminal GJD93_00510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_00510 PF00512 His Kinase A (phospho-acceptor) domain GJD93_00515 PF00486 Transcriptional regulatory protein, C terminal GJD93_00515 PF00072 Response regulator receiver domain GJD93_00530 PF00873 AcrB/AcrD/AcrF family GJD93_00570 PF13614 AAA domain GJD93_00575 PF02195 ParB-like nuclease domain GJD93_00575 PF17762 HTH domain found in ParB protein GJD93_00585 PF02384 N-6 DNA Methylase GJD93_00600 PF18766 SWI2/SNF2 ATPase GJD93_00600 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) GJD93_00600 PF11867 Domain of unknown function (DUF3387) GJD93_00630 PF00717 Peptidase S24-like GJD93_00635 PF00817 impB/mucB/samB family GJD93_00635 PF13438 Domain of unknown function (DUF4113) GJD93_00635 PF11799 impB/mucB/samB family C-terminal domain GJD93_00635 PF11798 IMS family HHH motif GJD93_00645 PF13742 OB-fold nucleic acid binding domain GJD93_00645 PF02601 Exonuclease VII, large subunit GJD93_00685 PF02796 Helix-turn-helix domain of resolvase GJD93_00685 PF00239 Resolvase, N terminal domain GJD93_00690 PF01636 Phosphotransferase enzyme family GJD93_00700 PF00398 Ribosomal RNA adenine dimethylase GJD93_00720 PF00005 ABC transporter GJD93_00720 PF12848 ABC transporter GJD93_00745 PF00905 Penicillin binding protein transpeptidase domain GJD93_00755 PF00486 Transcriptional regulatory protein, C terminal GJD93_00755 PF00072 Response regulator receiver domain GJD93_00760 PF00989 PAS fold GJD93_00760 PF18698 Histidine kinase sensor domain GJD93_00760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_00760 PF00512 His Kinase A (phospho-acceptor) domain GJD93_00760 PF00672 HAMP domain GJD93_00765 PF07690 Major Facilitator Superfamily GJD93_00770 PF00873 AcrB/AcrD/AcrF family GJD93_00775 PF00529 HlyD membrane-fusion protein of T1SS GJD93_00775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJD93_00790 PF01381 Helix-turn-helix GJD93_00795 PF05973 Phage derived protein Gp49-like (DUF891) GJD93_00805 PF00916 Sulfate permease family GJD93_00805 PF01740 STAS domain GJD93_00810 PF01381 Helix-turn-helix GJD93_00815 PF05973 Phage derived protein Gp49-like (DUF891) GJD93_00825 PF00239 Resolvase, N terminal domain GJD93_00825 PF02796 Helix-turn-helix domain of resolvase GJD93_00835 PF07690 Major Facilitator Superfamily GJD93_00850 PF00679 Elongation factor G C-terminus GJD93_00850 PF14492 Elongation Factor G, domain II GJD93_00850 PF03764 Elongation factor G, domain IV GJD93_00850 PF00009 Elongation factor Tu GTP binding domain GJD93_00890 PF13610 DDE domain GJD93_00895 PF01636 Phosphotransferase enzyme family GJD93_00900 PF03466 LysR substrate binding domain GJD93_00900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_00905 PF13610 DDE domain GJD93_00910 PF02522 Aminoglycoside 3-N-acetyltransferase GJD93_00915 PF01636 Phosphotransferase enzyme family GJD93_00925 PF13610 DDE domain GJD93_00940 PF02332 Methane/Phenol/Toluene Hydroxylase GJD93_00955 PF00809 Pterin binding enzyme GJD93_00960 PF11638 DnaA N-terminal domain GJD93_00960 PF08299 Bacterial dnaA protein helix-turn-helix GJD93_00960 PF00308 Bacterial dnaA protein GJD93_00965 PF02767 DNA polymerase III beta subunit, central domain GJD93_00965 PF00712 DNA polymerase III beta subunit, N-terminal domain GJD93_00965 PF02768 DNA polymerase III beta subunit, C-terminal domain GJD93_00970 PF02463 RecF/RecN/SMC N terminal domain GJD93_00975 PF18053 DNA gyrase B subunit insert domain GJD93_00975 PF00986 DNA gyrase B subunit, carboxyl terminus GJD93_00975 PF00204 DNA gyrase B GJD93_00975 PF01751 Toprim domain GJD93_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_00985 PF12848 ABC transporter GJD93_00985 PF00005 ABC transporter GJD93_01000 PF01521 Iron-sulphur cluster biosynthesis GJD93_01005 PF03702 Anhydro-N-acetylmuramic acid kinase GJD93_01010 PF00579 tRNA synthetases class I (W and Y) GJD93_01040 PF07690 Major Facilitator Superfamily GJD93_01045 PF07995 Glucose / Sorbosone dehydrogenase GJD93_01050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJD93_01055 PF01252 Signal peptidase (SPase) II GJD93_01060 PF08264 Anticodon-binding domain of tRNA GJD93_01060 PF00133 tRNA synthetases class I (I, L, M and V) GJD93_01060 PF06827 Zinc finger found in FPG and IleRS GJD93_01065 PF01687 Riboflavin kinase GJD93_01065 PF06574 FAD synthetase GJD93_01075 PF08362 YcdC-like protein, C-terminal region GJD93_01075 PF00440 Bacterial regulatory proteins, tetR family GJD93_01080 PF00583 Acetyltransferase (GNAT) family GJD93_01080 PF00696 Amino acid kinase family GJD93_01100 PF00106 short chain dehydrogenase GJD93_01105 PF13419 Haloacid dehalogenase-like hydrolase GJD93_01115 PF01323 DSBA-like thioredoxin domain GJD93_01120 PF00440 Bacterial regulatory proteins, tetR family GJD93_01125 PF01138 3' exoribonuclease family, domain 1 GJD93_01125 PF03725 3' exoribonuclease family, domain 2 GJD93_01135 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain GJD93_01135 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain GJD93_01140 PF01510 N-acetylmuramoyl-L-alanine amidase GJD93_01145 PF03023 Lipid II flippase MurJ GJD93_01150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJD93_01150 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GJD93_01155 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GJD93_01155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJD93_01160 PF08240 Alcohol dehydrogenase GroES-like domain GJD93_01160 PF00107 Zinc-binding dehydrogenase GJD93_01165 PF03352 Methyladenine glycosylase GJD93_01180 PF10576 Iron-sulfur binding domain of endonuclease III GJD93_01180 PF00730 HhH-GPD superfamily base excision DNA repair protein GJD93_01180 PF14815 NUDIX domain GJD93_01180 PF00633 Helix-hairpin-helix motif GJD93_01195 PF07043 Protein of unknown function (DUF1328) GJD93_01200 PF03692 Putative zinc- or iron-chelating domain GJD93_01205 PF00004 ATPase family associated with various cellular activities (AAA) GJD93_01205 PF16193 AAA C-terminal domain GJD93_01205 PF12002 MgsA AAA+ ATPase C terminal GJD93_01210 PF00313 'Cold-shock' DNA-binding domain GJD93_01215 PF01259 SAICAR synthetase GJD93_01225 PF00701 Dihydrodipicolinate synthetase family GJD93_01230 PF07690 Major Facilitator Superfamily GJD93_01240 PF00857 Isochorismatase family GJD93_01245 PF17941 Polyphosphate kinase C-terminal domain 1 GJD93_01245 PF13090 Polyphosphate kinase C-terminal domain 2 GJD93_01245 PF02503 Polyphosphate kinase middle domain GJD93_01245 PF13089 Polyphosphate kinase N-terminal domain GJD93_01270 PF02580 D-Tyr-tRNA(Tyr) deacylase GJD93_01275 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family GJD93_01275 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain GJD93_01280 PF00581 Rhodanese-like domain GJD93_01285 PF02666 Phosphatidylserine decarboxylase GJD93_01290 PF11808 Phosphate regulon sensor protein PhoR GJD93_01290 PF00989 PAS fold GJD93_01290 PF00512 His Kinase A (phospho-acceptor) domain GJD93_01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_01295 PF00072 Response regulator receiver domain GJD93_01295 PF00486 Transcriptional regulatory protein, C terminal GJD93_01305 PF00106 short chain dehydrogenase GJD93_01310 PF01554 MatE GJD93_01315 PF00155 Aminotransferase class I and II GJD93_01320 PF04286 Protein of unknown function (DUF445) GJD93_01335 PF04262 Glutamate-cysteine ligase GJD93_01340 PF02600 Disulfide bond formation protein DsbB GJD93_01350 PF05728 Uncharacterised protein family (UPF0227) GJD93_01355 PF00204 DNA gyrase B GJD93_01355 PF01751 Toprim domain GJD93_01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_01355 PF00986 DNA gyrase B subunit, carboxyl terminus GJD93_01365 PF00939 Sodium:sulfate symporter transmembrane region GJD93_01375 PF03502 Nucleoside-specific channel-forming protein, Tsx GJD93_01395 PF11412 Disulphide bond corrector protein DsbC GJD93_01395 PF02683 Cytochrome C biogenesis protein transmembrane region GJD93_01400 PF00043 Glutathione S-transferase, C-terminal domain GJD93_01400 PF13417 Glutathione S-transferase, N-terminal domain GJD93_01405 PF02525 Flavodoxin-like fold GJD93_01410 PF07859 alpha/beta hydrolase fold GJD93_01420 PF03960 ArsC family GJD93_01425 PF03372 Endonuclease/Exonuclease/phosphatase family GJD93_01430 PF00156 Phosphoribosyl transferase domain GJD93_01455 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain GJD93_01455 PF02951 Prokaryotic glutathione synthetase, N-terminal domain GJD93_01460 PF03033 Glycosyltransferase family 28 N-terminal domain GJD93_01460 PF04101 Glycosyltransferase family 28 C-terminal domain GJD93_01465 PF08245 Mur ligase middle domain GJD93_01465 PF01225 Mur ligase family, catalytic domain GJD93_01465 PF02875 Mur ligase family, glutamate ligase domain GJD93_01470 PF07478 D-ala D-ala ligase C-terminus GJD93_01470 PF01820 D-ala D-ala ligase N-terminus GJD93_01475 PF08478 POTRA domain, FtsQ-type GJD93_01475 PF03799 Cell division protein FtsQ GJD93_01480 PF02491 SHS2 domain inserted in FTSA GJD93_01485 PF12327 FtsZ family, C-terminal domain GJD93_01485 PF00091 Tubulin/FtsZ family, GTPase domain GJD93_01490 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase GJD93_01505 PF00456 Transketolase, thiamine diphosphate binding domain GJD93_01505 PF17831 Pyruvate dehydrogenase E1 component middle domain GJD93_01510 PF00364 Biotin-requiring enzyme GJD93_01510 PF02817 e3 binding domain GJD93_01510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GJD93_01515 PF01169 Uncharacterized protein family UPF0016 GJD93_01520 PF01613 Flavin reductase like domain GJD93_01520 PF00258 Flavodoxin GJD93_01525 PF03692 Putative zinc- or iron-chelating domain GJD93_01530 PF00478 IMP dehydrogenase / GMP reductase domain GJD93_01530 PF00571 CBS domain GJD93_01535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJD93_01535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJD93_01535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJD93_01535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJD93_01540 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region GJD93_01540 PF01243 Pyridoxamine 5'-phosphate oxidase GJD93_01545 PF02272 DHHA1 domain GJD93_01545 PF01368 DHH family GJD93_01545 PF17768 RecJ OB domain GJD93_01570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GJD93_01575 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) GJD93_01585 PF05552 Conserved TM helix GJD93_01585 PF00924 Mechanosensitive ion channel GJD93_01590 PF16177 Acetyl-coenzyme A synthetase N-terminus GJD93_01590 PF00501 AMP-binding enzyme GJD93_01590 PF13193 AMP-binding enzyme C-terminal domain GJD93_01630 PF13610 DDE domain GJD93_01635 PF00072 Response regulator receiver domain GJD93_01645 PF02796 Helix-turn-helix domain of resolvase GJD93_01645 PF00239 Resolvase, N terminal domain GJD93_01650 PF01494 FAD binding domain GJD93_01655 PF07690 Major Facilitator Superfamily GJD93_01660 PF03466 LysR substrate binding domain GJD93_01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_01690 PF00873 AcrB/AcrD/AcrF family GJD93_01695 PF01545 Cation efflux family GJD93_01700 PF00239 Resolvase, N terminal domain GJD93_01700 PF02796 Helix-turn-helix domain of resolvase GJD93_01710 PF13610 DDE domain GJD93_01715 PF01636 Phosphotransferase enzyme family GJD93_01720 PF13610 DDE domain GJD93_01730 PF00186 Dihydrofolate reductase GJD93_01740 PF01909 Nucleotidyltransferase domain GJD93_01740 PF13427 Domain of unknown function (DUF4111) GJD93_01745 PF07690 Major Facilitator Superfamily GJD93_01750 PF13427 Domain of unknown function (DUF4111) GJD93_01750 PF01909 Nucleotidyltransferase domain GJD93_01755 PF00893 Small Multidrug Resistance protein GJD93_01760 PF00809 Pterin binding enzyme GJD93_01770 PF13610 DDE domain GJD93_01785 PF00106 short chain dehydrogenase GJD93_01790 PF03050 Transposase IS66 family GJD93_01790 PF13817 IS66 C-terminal element GJD93_01790 PF13007 Transposase C of IS166 homeodomain GJD93_01790 PF13005 zinc-finger binding domain of transposase IS66 GJD93_01815 PF01661 Macro domain GJD93_01840 PF13610 DDE domain GJD93_01855 PF07690 Major Facilitator Superfamily GJD93_01860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_01860 PF03466 LysR substrate binding domain GJD93_01875 PF00561 alpha/beta hydrolase fold GJD93_01880 PF01494 FAD binding domain GJD93_01895 PF01636 Phosphotransferase enzyme family GJD93_01905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJD93_01905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJD93_01905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJD93_01905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJD93_01910 PF00809 Pterin binding enzyme GJD93_01925 PF02332 Methane/Phenol/Toluene Hydroxylase GJD93_01945 PF02796 Helix-turn-helix domain of resolvase GJD93_01945 PF00239 Resolvase, N terminal domain GJD93_01950 PF01636 Phosphotransferase enzyme family GJD93_01955 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase GJD93_01990 PF04221 RelB antitoxin GJD93_01995 PF02566 OsmC-like protein GJD93_02000 PF01047 MarR family GJD93_02030 PF04221 RelB antitoxin GJD93_02050 PF02796 Helix-turn-helix domain of resolvase GJD93_02050 PF00239 Resolvase, N terminal domain GJD93_02055 PF02601 Exonuclease VII, large subunit GJD93_02055 PF13742 OB-fold nucleic acid binding domain GJD93_02065 PF00817 impB/mucB/samB family GJD93_02065 PF13438 Domain of unknown function (DUF4113) GJD93_02065 PF11799 impB/mucB/samB family C-terminal domain GJD93_02070 PF00717 Peptidase S24-like GJD93_02145 PF04851 Type III restriction enzyme, res subunit GJD93_02145 PF00271 Helicase conserved C-terminal domain GJD93_02145 PF02151 UvrB/uvrC motif GJD93_02145 PF17757 UvrB interaction domain GJD93_02145 PF12344 Ultra-violet resistance protein B GJD93_02150 PF00266 Aminotransferase class-V GJD93_02160 PF07120 Protein of unknown function (DUF1376) GJD93_02190 PF01380 SIS domain GJD93_02195 PF14602 Hexapeptide repeat of succinyl-transferase GJD93_02195 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_02195 PF12804 MobA-like NTP transferase domain GJD93_02200 PF04608 Phosphatidylglycerophosphatase A GJD93_02205 PF00586 AIR synthase related protein, N-terminal domain GJD93_02205 PF02769 AIR synthase related protein, C-terminal domain GJD93_02210 PF01029 NusB family GJD93_02215 PF00885 6,7-dimethyl-8-ribityllumazine synthase GJD93_02220 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GJD93_02220 PF00925 GTP cyclohydrolase II GJD93_02230 PF00196 Bacterial regulatory proteins, luxR family GJD93_02230 PF00072 Response regulator receiver domain GJD93_02240 PF02705 K+ potassium transporter GJD93_02260 PF00230 Major intrinsic protein GJD93_02265 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJD93_02265 PF12833 Helix-turn-helix domain GJD93_02275 PF00977 Histidine biosynthesis protein GJD93_02280 PF01636 Phosphotransferase enzyme family GJD93_02295 PF00892 EamA-like transporter family GJD93_02300 PF00977 Histidine biosynthesis protein GJD93_02315 PF00117 Glutamine amidotransferase class-I GJD93_02320 PF00475 Imidazoleglycerol-phosphate dehydratase GJD93_02335 PF02371 Transposase IS116/IS110/IS902 family GJD93_02335 PF01548 Transposase GJD93_02370 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain GJD93_02370 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain GJD93_02375 PF00512 His Kinase A (phospho-acceptor) domain GJD93_02375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_02375 PF00672 HAMP domain GJD93_02380 PF00486 Transcriptional regulatory protein, C terminal GJD93_02380 PF00072 Response regulator receiver domain GJD93_02385 PF16921 Tex protein YqgF-like domain GJD93_02385 PF09371 Tex-like protein N-terminal domain GJD93_02385 PF00575 S1 RNA binding domain GJD93_02385 PF17674 HHH domain GJD93_02400 PF00106 short chain dehydrogenase GJD93_02405 PF01053 Cys/Met metabolism PLP-dependent enzyme GJD93_02410 PF00005 ABC transporter GJD93_02410 PF12848 ABC transporter GJD93_02430 PF00749 tRNA synthetases class I (E and Q), catalytic domain GJD93_02445 PF01795 MraW methylase family GJD93_02455 PF00905 Penicillin binding protein transpeptidase domain GJD93_02455 PF03717 Penicillin-binding Protein dimerisation domain GJD93_02460 PF08245 Mur ligase middle domain GJD93_02460 PF01225 Mur ligase family, catalytic domain GJD93_02460 PF02875 Mur ligase family, glutamate ligase domain GJD93_02465 PF02875 Mur ligase family, glutamate ligase domain GJD93_02465 PF01225 Mur ligase family, catalytic domain GJD93_02465 PF08245 Mur ligase middle domain GJD93_02470 PF00953 Glycosyl transferase family 4 GJD93_02475 PF13847 Methyltransferase domain GJD93_02480 PF17092 Penicillin-binding protein OB-like domain GJD93_02480 PF00912 Transglycosylase GJD93_02480 PF00905 Penicillin binding protein transpeptidase domain GJD93_02505 PF00263 Bacterial type II and III secretion system protein GJD93_02505 PF03958 Bacterial type II/III secretion system short domain GJD93_02505 PF07660 Secretin and TonB N terminus short domain GJD93_02505 PF11741 AMIN domain GJD93_02510 PF01202 Shikimate kinase GJD93_02515 PF01761 3-dehydroquinate synthase GJD93_02525 PF01645 Conserved region in glutamate synthase GJD93_02525 PF04898 Glutamate synthase central domain GJD93_02525 PF01493 GXGXG motif GJD93_02525 PF00310 Glutamine amidotransferases class-II GJD93_02530 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_02530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GJD93_02535 PF04011 LemA family GJD93_02540 PF04536 TPM domain GJD93_02550 PF01406 tRNA synthetases class I (C) catalytic domain GJD93_02550 PF09190 DALR domain GJD93_02565 PF02463 RecF/RecN/SMC N terminal domain GJD93_02570 PF07963 Prokaryotic N-terminal methylation motif GJD93_02570 PF00114 Pilin (bacterial filament) GJD93_02575 PF00114 Pilin (bacterial filament) GJD93_02575 PF07963 Prokaryotic N-terminal methylation motif GJD93_02580 PF13737 Transposase DDE domain GJD93_02585 PF11846 Virulence factor membrane-bound polymerase, C-terminal GJD93_02585 PF04932 O-Antigen ligase GJD93_02585 PF15864 Protein glycosylation ligase GJD93_02590 PF00210 Ferritin-like domain GJD93_02595 PF04324 BFD-like [2Fe-2S] binding domain GJD93_02600 PF01042 Endoribonuclease L-PSP GJD93_02605 PF02824 TGS domain GJD93_02605 PF13291 ACT domain GJD93_02605 PF04607 Region found in RelA / SpoT proteins GJD93_02610 PF01192 RNA polymerase Rpb6 GJD93_02615 PF00625 Guanylate kinase GJD93_02620 PF02401 LytB protein GJD93_02625 PF07963 Prokaryotic N-terminal methylation motif GJD93_02625 PF00114 Pilin (bacterial filament) GJD93_02660 PF00886 Ribosomal protein S16 GJD93_02665 PF05239 PRC-barrel domain GJD93_02665 PF01782 RimM N-terminal domain GJD93_02670 PF01746 tRNA (Guanine-1)-methyltransferase GJD93_02675 PF01245 Ribosomal protein L19 GJD93_02680 PF00561 alpha/beta hydrolase fold GJD93_02685 PF00561 alpha/beta hydrolase fold GJD93_02690 PF03280 Proteobacterial lipase chaperone protein GJD93_02695 PF01509 TruB family pseudouridylate synthase (N terminal domain) GJD93_02695 PF16198 tRNA pseudouridylate synthase B C-terminal domain GJD93_02695 PF09157 Pseudouridine synthase II TruB, C-terminal GJD93_02705 PF00892 EamA-like transporter family GJD93_02710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GJD93_02710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GJD93_02715 PF02913 FAD linked oxidases, C-terminal domain GJD93_02715 PF01565 FAD binding domain GJD93_02740 PF12823 Domain of unknown function (DUF3817) GJD93_02745 PF00080 Copper/zinc superoxide dismutase (SODC) GJD93_02750 PF01594 AI-2E family transporter GJD93_02755 PF13614 AAA domain GJD93_02765 PF01209 ubiE/COQ5 methyltransferase family GJD93_02780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GJD93_02785 PF01197 Ribosomal protein L31 GJD93_02800 PF03109 ABC1 family GJD93_02805 PF01554 MatE GJD93_02815 PF06969 HemN C-terminal domain GJD93_02815 PF04055 Radical SAM superfamily GJD93_02820 PF00145 C-5 cytosine-specific DNA methylase GJD93_02825 PF09561 HpaII restriction endonuclease GJD93_02845 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_02845 PF12806 Acetyl-CoA dehydrogenase C-terminal like GJD93_02845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_02845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_02855 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GJD93_02855 PF01488 Shikimate / quinate 5-dehydrogenase GJD93_02855 PF08501 Shikimate dehydrogenase substrate binding domain GJD93_02870 PF04055 Radical SAM superfamily GJD93_02870 PF06969 HemN C-terminal domain GJD93_02875 PF00925 GTP cyclohydrolase II GJD93_02880 PF02779 Transketolase, pyrimidine binding domain GJD93_02880 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GJD93_02880 PF02780 Transketolase, C-terminal domain GJD93_02885 PF00459 Inositol monophosphatase family GJD93_02890 PF00270 DEAD/DEAH box helicase GJD93_02890 PF00271 Helicase conserved C-terminal domain GJD93_02895 PF00005 ABC transporter GJD93_02900 PF02405 Permease MlaE GJD93_02905 PF02470 MlaD protein GJD93_02910 PF05494 MlaC protein GJD93_02920 PF01544 CorA-like Mg2+ transporter protein GJD93_02925 PF03641 Possible lysine decarboxylase GJD93_02935 PF00156 Phosphoribosyl transferase domain GJD93_02940 PF00270 DEAD/DEAH box helicase GJD93_02940 PF00271 Helicase conserved C-terminal domain GJD93_02940 PF17191 RecG wedge domain GJD93_02950 PF01553 Acyltransferase GJD93_02960 PF00375 Sodium:dicarboxylate symporter family GJD93_02970 PF01926 50S ribosome-binding GTPase GJD93_02975 PF02082 Transcriptional regulator GJD93_02980 PF00970 Oxidoreductase FAD-binding domain GJD93_02980 PF00042 Globin GJD93_02980 PF00175 Oxidoreductase NAD-binding domain GJD93_02985 PF05872 Bacterial protein of unknown function (DUF853) GJD93_02990 PF01053 Cys/Met metabolism PLP-dependent enzyme GJD93_02995 PF00117 Glutamine amidotransferase class-I GJD93_03000 PF00338 Ribosomal protein S10p/S20e GJD93_03005 PF00297 Ribosomal protein L3 GJD93_03010 PF00573 Ribosomal protein L4/L1 family GJD93_03015 PF00276 Ribosomal protein L23 GJD93_03020 PF00181 Ribosomal Proteins L2, RNA binding domain GJD93_03020 PF03947 Ribosomal Proteins L2, C-terminal domain GJD93_03025 PF00203 Ribosomal protein S19 GJD93_03030 PF00237 Ribosomal protein L22p/L17e GJD93_03035 PF07650 KH domain GJD93_03035 PF00189 Ribosomal protein S3, C-terminal domain GJD93_03040 PF00252 Ribosomal protein L16p/L10e GJD93_03045 PF00831 Ribosomal L29 protein GJD93_03050 PF00366 Ribosomal protein S17 GJD93_03055 PF00238 Ribosomal protein L14p/L23e GJD93_03060 PF00467 KOW motif GJD93_03060 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GJD93_03065 PF00673 ribosomal L5P family C-terminus GJD93_03065 PF00281 Ribosomal protein L5 GJD93_03070 PF00253 Ribosomal protein S14p/S29e GJD93_03075 PF00410 Ribosomal protein S8 GJD93_03080 PF00347 Ribosomal protein L6 GJD93_03085 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GJD93_03090 PF00333 Ribosomal protein S5, N-terminal domain GJD93_03090 PF03719 Ribosomal protein S5, C-terminal domain GJD93_03095 PF00327 Ribosomal protein L30p/L7e GJD93_03100 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GJD93_03105 PF00344 SecY translocase GJD93_03110 PF00444 Ribosomal protein L36 GJD93_03115 PF00416 Ribosomal protein S13/S18 GJD93_03120 PF00411 Ribosomal protein S11 GJD93_03125 PF01479 S4 domain GJD93_03125 PF00163 Ribosomal protein S4/S9 N-terminal domain GJD93_03130 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GJD93_03130 PF01000 RNA polymerase Rpb3/RpoA insert domain GJD93_03130 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GJD93_03135 PF01196 Ribosomal protein L17 GJD93_03140 PF00743 Flavin-binding monooxygenase-like GJD93_03145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_03145 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_03145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_03150 PF03937 Flavinator of succinate dehydrogenase GJD93_03185 PF09526 Probable metal-binding protein (DUF2387) GJD93_03190 PF01432 Peptidase family M3 GJD93_03200 PF08461 Ribonuclease R winged-helix domain GJD93_03200 PF17876 Cold shock domain GJD93_03200 PF00773 RNB domain GJD93_03200 PF00575 S1 RNA binding domain GJD93_03200 PF08206 Ribonuclease B OB domain GJD93_03230 PF01557 Fumarylacetoacetate (FAA) hydrolase family GJD93_03235 PF01625 Peptide methionine sulfoxide reductase GJD93_03250 PF00186 Dihydrofolate reductase GJD93_03255 PF00303 Thymidylate synthase GJD93_03265 PF01790 Prolipoprotein diacylglyceryl transferase GJD93_03280 PF00902 Sec-independent protein translocase protein (TatC) GJD93_03285 PF02416 mttA/Hcf106 family GJD93_03290 PF02416 mttA/Hcf106 family GJD93_03295 PF01725 Ham1 family GJD93_03310 PF07021 Methionine biosynthesis protein MetW GJD93_03310 PF00561 alpha/beta hydrolase fold GJD93_03315 PF00561 alpha/beta hydrolase fold GJD93_03320 PF08502 LeuA allosteric (dimerisation) domain GJD93_03320 PF00682 HMGL-like GJD93_03325 PF01070 FMN-dependent dehydrogenase GJD93_03330 PF13640 2OG-Fe(II) oxygenase superfamily GJD93_03330 PF18331 PKHD-type hydroxylase C-terminal domain GJD93_03335 PF07715 TonB-dependent Receptor Plug Domain GJD93_03335 PF00593 TonB dependent receptor GJD93_03340 PF00593 TonB dependent receptor GJD93_03340 PF07715 TonB-dependent Receptor Plug Domain GJD93_03345 PF05697 Bacterial trigger factor protein (TF) GJD93_03345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJD93_03345 PF05698 Bacterial trigger factor protein (TF) C-terminus GJD93_03350 PF00574 Clp protease GJD93_03355 PF07724 AAA domain (Cdc48 subfamily) GJD93_03355 PF06689 ClpX C4-type zinc finger GJD93_03355 PF10431 C-terminal, D2-small domain, of ClpB protein GJD93_03365 PF05683 Fumarase C-terminus GJD93_03365 PF05681 Fumarate hydratase (Fumerase) GJD93_03370 PF13649 Methyltransferase domain GJD93_03375 PF07085 DRTGG domain GJD93_03375 PF01515 Phosphate acetyl/butaryl transferase GJD93_03380 PF00871 Acetokinase family GJD93_03390 PF00171 Aldehyde dehydrogenase family GJD93_03405 PF00933 Glycosyl hydrolase family 3 N terminal domain GJD93_03410 PF03572 Peptidase family S41 GJD93_03410 PF11818 C-terminal domain of tail specific protease (DUF3340) GJD93_03410 PF00595 PDZ domain GJD93_03410 PF17804 Tail specific protease N-terminal domain GJD93_03415 PF00990 Diguanylate cyclase, GGDEF domain GJD93_03415 PF03707 Bacterial signalling protein N terminal repeat GJD93_03415 PF00563 EAL domain GJD93_03425 PF03144 Elongation factor Tu domain 2 GJD93_03425 PF00009 Elongation factor Tu GTP binding domain GJD93_03425 PF16658 Class II release factor RF3, C-terminal domain GJD93_03440 PF01026 TatD related DNase GJD93_03445 PF00899 ThiF family GJD93_03450 PF01207 Dihydrouridine synthase (Dus) GJD93_03460 PF07690 Major Facilitator Superfamily GJD93_03470 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GJD93_03470 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GJD93_03475 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch GJD93_03480 PF02233 NAD(P) transhydrogenase beta subunit GJD93_03490 PF01261 Xylose isomerase-like TIM barrel GJD93_03495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GJD93_03495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GJD93_03500 PF00378 Enoyl-CoA hydratase/isomerase GJD93_03505 PF01627 Hpt domain GJD93_03505 PF00672 HAMP domain GJD93_03505 PF00072 Response regulator receiver domain GJD93_03505 PF00512 His Kinase A (phospho-acceptor) domain GJD93_03505 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GJD93_03505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_03510 PF00291 Pyridoxal-phosphate dependent enzyme GJD93_03520 PF05958 tRNA (Uracil-5-)-methyltransferase GJD93_03525 PF04607 Region found in RelA / SpoT proteins GJD93_03525 PF02824 TGS domain GJD93_03525 PF13291 ACT domain GJD93_03535 PF07549 SecD/SecF GG Motif GJD93_03535 PF02355 Protein export membrane protein GJD93_03540 PF07549 SecD/SecF GG Motif GJD93_03540 PF02355 Protein export membrane protein GJD93_03540 PF13721 SecD export protein N-terminal TM region GJD93_03545 PF02699 Preprotein translocase subunit GJD93_03550 PF01702 Queuine tRNA-ribosyltransferase GJD93_03555 PF07282 Putative transposase DNA-binding domain GJD93_03555 PF01385 Probable transposase GJD93_03555 PF12323 Helix-turn-helix domain GJD93_03565 PF01590 GAF domain GJD93_03565 PF00990 Diguanylate cyclase, GGDEF domain GJD93_03565 PF00563 EAL domain GJD93_03565 PF00360 Phytochrome region GJD93_03570 PF04011 LemA family GJD93_03580 PF02547 Queuosine biosynthesis protein GJD93_03590 PF03971 Monomeric isocitrate dehydrogenase GJD93_03595 PF00672 HAMP domain GJD93_03595 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GJD93_03595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_03595 PF00512 His Kinase A (phospho-acceptor) domain GJD93_03595 PF00072 Response regulator receiver domain GJD93_03595 PF01627 Hpt domain GJD93_03600 PF02321 Outer membrane efflux protein GJD93_03605 PF00005 ABC transporter GJD93_03605 PF02687 FtsX-like permease family GJD93_03605 PF12704 MacB-like periplasmic core domain GJD93_03610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJD93_03615 PF01814 Hemerythrin HHE cation binding domain GJD93_03630 PF00133 tRNA synthetases class I (I, L, M and V) GJD93_03630 PF13603 Leucyl-tRNA synthetase, Domain 2 GJD93_03630 PF08264 Anticodon-binding domain of tRNA GJD93_03630 PF09334 tRNA synthetases class I (M) GJD93_03640 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GJD93_03640 PF00205 Thiamine pyrophosphate enzyme, central domain GJD93_03640 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GJD93_03645 PF10369 Small subunit of acetolactate synthase GJD93_03650 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GJD93_03650 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GJD93_03670 PF01522 Polysaccharide deacetylase GJD93_03675 PF00534 Glycosyl transferases group 1 GJD93_03675 PF08323 Starch synthase catalytic domain GJD93_03725 PF01336 OB-fold nucleic acid binding domain GJD93_03725 PF00152 tRNA synthetases class II (D, K and N) GJD93_03725 PF02938 GAD domain GJD93_03735 PF00593 TonB dependent receptor GJD93_03735 PF07715 TonB-dependent Receptor Plug Domain GJD93_03740 PF13091 PLD-like domain GJD93_03755 PF06146 Phosphate-starvation-inducible E GJD93_03760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_03760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_03760 PF12806 Acetyl-CoA dehydrogenase C-terminal like GJD93_03760 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_03765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_03765 PF12806 Acetyl-CoA dehydrogenase C-terminal like GJD93_03765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_03765 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_03775 PF00512 His Kinase A (phospho-acceptor) domain GJD93_03775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_03775 PF00672 HAMP domain GJD93_03780 PF00486 Transcriptional regulatory protein, C terminal GJD93_03780 PF00072 Response regulator receiver domain GJD93_03785 PF01385 Probable transposase GJD93_03785 PF07282 Putative transposase DNA-binding domain GJD93_03785 PF12323 Helix-turn-helix domain GJD93_03790 PF02696 Uncharacterized ACR, YdiU/UPF0061 family GJD93_03805 PF01923 Cobalamin adenosyltransferase GJD93_03810 PF07715 TonB-dependent Receptor Plug Domain GJD93_03810 PF00593 TonB dependent receptor GJD93_03815 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GJD93_03820 PF00291 Pyridoxal-phosphate dependent enzyme GJD93_03840 PF03710 Glutamate-ammonia ligase adenylyltransferase GJD93_03840 PF08335 GlnD PII-uridylyltransferase GJD93_03845 PF01063 Amino-transferase class IV GJD93_03870 PF00534 Glycosyl transferases group 1 GJD93_03870 PF13439 Glycosyltransferase Family 4 GJD93_03875 PF01569 PAP2 superfamily GJD93_03880 PF04384 Iron-sulphur cluster assembly GJD93_03885 PF00334 Nucleoside diphosphate kinase GJD93_03890 PF04055 Radical SAM superfamily GJD93_03900 PF13464 Domain of unknown function (DUF4115) GJD93_03905 PF04551 GcpE protein GJD93_03910 PF03129 Anticodon binding domain GJD93_03910 PF13393 Histidyl-tRNA synthetase GJD93_03920 PF01011 PQQ enzyme repeat GJD93_03920 PF13360 PQQ-like domain GJD93_03925 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GJD93_03925 PF01926 50S ribosome-binding GTPase GJD93_03935 PF03819 MazG nucleotide pyrophosphohydrolase domain GJD93_03940 PF10531 SLBB domain GJD93_03945 PF01743 Poly A polymerase head domain GJD93_03945 PF12626 Polymerase A arginine-rich C-terminus GJD93_03945 PF12627 Probable RNA and SrmB- binding site of polymerase A GJD93_03950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GJD93_03955 PF02548 Ketopantoate hydroxymethyltransferase GJD93_03960 PF02569 Pantoate-beta-alanine ligase GJD93_03965 PF03668 P-loop ATPase protein family GJD93_03970 PF00381 PTS HPr component phosphorylation site GJD93_03975 PF04751 Protein of unknown function (DUF615) GJD93_03980 PF13193 AMP-binding enzyme C-terminal domain GJD93_03980 PF00501 AMP-binding enzyme GJD93_03995 PF01565 FAD binding domain GJD93_03995 PF04030 D-arabinono-1,4-lactone oxidase GJD93_04005 PF03129 Anticodon binding domain GJD93_04005 PF02824 TGS domain GJD93_04005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GJD93_04005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GJD93_04010 PF05198 Translation initiation factor IF-3, N-terminal domain GJD93_04010 PF00707 Translation initiation factor IF-3, C-terminal domain GJD93_04015 PF00043 Glutathione S-transferase, C-terminal domain GJD93_04015 PF02798 Glutathione S-transferase, N-terminal domain GJD93_04025 PF09335 SNARE associated Golgi protein GJD93_04035 PF01632 Ribosomal protein L35 GJD93_04040 PF00453 Ribosomal protein L20 GJD93_04070 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GJD93_04070 PF01409 tRNA synthetases class II core domain (F) GJD93_04075 PF03484 tRNA synthetase B5 domain GJD93_04075 PF03147 Ferredoxin-fold anticodon binding domain GJD93_04075 PF01588 Putative tRNA binding domain GJD93_04075 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GJD93_04075 PF03483 B3/4 domain GJD93_04080 PF00216 Bacterial DNA-binding protein GJD93_04090 PF07498 Rho termination factor, N-terminal domain GJD93_04090 PF07497 Rho termination factor, RNA-binding domain GJD93_04090 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GJD93_04095 PF00085 Thioredoxin GJD93_04100 PF02541 Ppx/GppA phosphatase family GJD93_04105 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GJD93_04110 PF11734 TilS substrate C-terminal domain GJD93_04110 PF09179 TilS substrate binding domain GJD93_04110 PF01171 PP-loop family GJD93_04115 PF14748 Pyrroline-5-carboxylate reductase dimerisation GJD93_04115 PF03807 NADP oxidoreductase coenzyme F420-dependent GJD93_04120 PF02325 YGGT family GJD93_04125 PF00476 DNA polymerase family A GJD93_04125 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GJD93_04125 PF01367 5'-3' exonuclease, C-terminal SAM fold GJD93_04125 PF01612 3'-5' exonuclease GJD93_04145 PF00437 Type II/IV secretion system protein GJD93_04150 PF00795 Carbon-nitrogen hydrolase GJD93_04195 PF00309 Sigma-54 factor, Activator interacting domain (AID) GJD93_04195 PF04963 Sigma-54 factor, core binding domain GJD93_04195 PF04552 Sigma-54, DNA binding domain GJD93_04200 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GJD93_04205 PF01722 BolA-like protein GJD93_04210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GJD93_04215 PF01634 ATP phosphoribosyltransferase GJD93_04220 PF00815 Histidinol dehydrogenase GJD93_04225 PF00155 Aminotransferase class I and II GJD93_04230 PF00425 chorismate binding enzyme GJD93_04230 PF04715 Anthranilate synthase component I, N terminal region GJD93_04270 PF00293 NUDIX domain GJD93_04275 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_04280 PF00814 Glycoprotease family GJD93_04285 PF02673 Bacitracin resistance protein BacA GJD93_04290 PF04445 Putative SAM-dependent methyltransferase GJD93_04300 PF00756 Putative esterase GJD93_04305 PF05987 Bacterial protein of unknown function (DUF898) GJD93_04320 PF00834 Ribulose-phosphate 3 epimerase family GJD93_04330 PF07732 Multicopper oxidase GJD93_04330 PF00394 Multicopper oxidase GJD93_04330 PF07731 Multicopper oxidase GJD93_04345 PF00893 Small Multidrug Resistance protein GJD93_04350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GJD93_04350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GJD93_04355 PF08378 Nuclease-related domain GJD93_04360 PF02581 Thiamine monophosphate synthase GJD93_04360 PF08543 Phosphomethylpyrimidine kinase GJD93_04365 PF13419 Haloacid dehalogenase-like hydrolase GJD93_04380 PF00109 Beta-ketoacyl synthase, N-terminal domain GJD93_04380 PF02801 Beta-ketoacyl synthase, C-terminal domain GJD93_04390 PF00164 Ribosomal protein S12/S23 GJD93_04395 PF00177 Ribosomal protein S7p/S5e GJD93_04400 PF00679 Elongation factor G C-terminus GJD93_04400 PF00009 Elongation factor Tu GTP binding domain GJD93_04400 PF14492 Elongation Factor G, domain II GJD93_04400 PF03764 Elongation factor G, domain IV GJD93_04400 PF03144 Elongation factor Tu domain 2 GJD93_04405 PF00009 Elongation factor Tu GTP binding domain GJD93_04405 PF03143 Elongation factor Tu C-terminal domain GJD93_04405 PF03144 Elongation factor Tu domain 2 GJD93_04415 PF00583 Acetyltransferase (GNAT) family GJD93_04420 PF04376 Arginine-tRNA-protein transferase, N terminus GJD93_04420 PF04377 Arginine-tRNA-protein transferase, C terminus GJD93_04425 PF03588 Leucyl/phenylalanyl-tRNA protein transferase GJD93_04430 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_04435 PF01580 FtsK/SpoIIIE family GJD93_04435 PF09397 Ftsk gamma domain GJD93_04435 PF17854 FtsK alpha domain GJD93_04435 PF13491 4TM region of DNA translocase FtsK/SpoIIIE GJD93_04445 PF03776 Septum formation topological specificity factor MinE GJD93_04450 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GJD93_04455 PF03775 Septum formation inhibitor MinC, C-terminal domain GJD93_04465 PF01553 Acyltransferase GJD93_04470 PF00691 OmpA family GJD93_04470 PF13488 Glycine zipper GJD93_04475 PF00580 UvrD/REP helicase N-terminal domain GJD93_04475 PF13361 UvrD-like helicase C-terminal domain GJD93_04480 PF00692 dUTPase GJD93_04485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJD93_04485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJD93_04485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJD93_04485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJD93_04490 PF00696 Amino acid kinase family GJD93_04500 PF13230 Glutamine amidotransferases class-II GJD93_04505 PF01814 Hemerythrin HHE cation binding domain GJD93_04515 PF03658 RnfH family Ubiquitin GJD93_04520 PF04355 SmpA / OmlA family GJD93_04525 PF01475 Ferric uptake regulator family GJD93_04530 PF00437 Type II/IV secretion system protein GJD93_04535 PF00437 Type II/IV secretion system protein GJD93_04540 PF01168 Alanine racemase, N-terminal domain GJD93_04555 PF00149 Calcineurin-like phosphoesterase GJD93_04555 PF12320 Type 5 capsule protein repressor C-terminal domain GJD93_04565 PF08338 Domain of unknown function (DUF1731) GJD93_04565 PF01370 NAD dependent epimerase/dehydratase family GJD93_04570 PF01266 FAD dependent oxidoreductase GJD93_04575 PF00490 Delta-aminolevulinic acid dehydratase GJD93_04580 PF03061 Thioesterase superfamily GJD93_04590 PF00501 AMP-binding enzyme GJD93_04605 PF13185 GAF domain GJD93_04605 PF00158 Sigma-54 interaction domain GJD93_04605 PF02954 Bacterial regulatory protein, Fis family GJD93_04610 PF00753 Metallo-beta-lactamase superfamily GJD93_04615 PF01925 Sulfite exporter TauE/SafE GJD93_04625 PF06414 Zeta toxin GJD93_04635 PF00005 ABC transporter GJD93_04635 PF02687 FtsX-like permease family GJD93_04635 PF12704 MacB-like periplasmic core domain GJD93_04645 PF13533 Biotin-lipoyl like GJD93_04660 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GJD93_04660 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GJD93_04675 PF05992 SbmA/BacA-like family GJD93_04690 PF02934 GatB/GatE catalytic domain GJD93_04690 PF02637 GatB domain GJD93_04695 PF01425 Amidase GJD93_04700 PF02686 Glu-tRNAGln amidotransferase C subunit GJD93_04710 PF04085 rod shape-determining protein MreC GJD93_04715 PF04093 rod shape-determining protein MreD GJD93_04720 PF02545 Maf-like protein GJD93_04725 PF00575 S1 RNA binding domain GJD93_04725 PF10150 Ribonuclease E/G family GJD93_04730 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain GJD93_04730 PF06974 Protein of unknown function (DUF1298) GJD93_04735 PF01507 Phosphoadenosine phosphosulfate reductase family GJD93_04765 PF00005 ABC transporter GJD93_04765 PF17850 CysA C-terminal regulatory domain GJD93_04765 PF12857 TOBE-like domain GJD93_04770 PF00324 Amino acid permease GJD93_04775 PF04303 PrpF protein GJD93_04780 PF00348 Polyprenyl synthetase GJD93_04790 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 GJD93_04795 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GJD93_04800 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GJD93_04800 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit GJD93_04810 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit GJD93_04810 PF10531 SLBB domain GJD93_04810 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region GJD93_04815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GJD93_04815 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GJD93_04815 PF00384 Molybdopterin oxidoreductase GJD93_04820 PF00146 NADH dehydrogenase GJD93_04825 PF12838 4Fe-4S dicluster domain GJD93_04830 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 GJD93_04835 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GJD93_04840 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GJD93_04840 PF00361 Proton-conducting membrane transporter GJD93_04845 PF00361 Proton-conducting membrane transporter GJD93_04850 PF00361 Proton-conducting membrane transporter GJD93_04860 PF00313 'Cold-shock' DNA-binding domain GJD93_04865 PF00313 'Cold-shock' DNA-binding domain GJD93_04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_04870 PF03466 LysR substrate binding domain GJD93_04875 PF00970 Oxidoreductase FAD-binding domain GJD93_04875 PF00175 Oxidoreductase NAD-binding domain GJD93_04895 PF05552 Conserved TM helix GJD93_04910 PF00291 Pyridoxal-phosphate dependent enzyme GJD93_04920 PF06100 MCRA family GJD93_04945 PF09334 tRNA synthetases class I (M) GJD93_04945 PF01588 Putative tRNA binding domain GJD93_04950 PF10609 NUBPL iron-transfer P-loop NTPase GJD93_04955 PF00692 dUTPase GJD93_04980 PF04073 Aminoacyl-tRNA editing domain GJD93_04980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GJD93_04980 PF03129 Anticodon binding domain GJD93_04985 PF00873 AcrB/AcrD/AcrF family GJD93_04990 PF13533 Biotin-lipoyl like GJD93_05000 PF00072 Response regulator receiver domain GJD93_05005 PF00072 Response regulator receiver domain GJD93_05010 PF01584 CheW-like domain GJD93_05015 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term GJD93_05015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GJD93_05020 PF02895 Signal transducing histidine kinase, homodimeric domain GJD93_05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_05020 PF01584 CheW-like domain GJD93_05020 PF01627 Hpt domain GJD93_05020 PF07194 P2 response regulator binding domain GJD93_05030 PF07687 Peptidase dimerisation domain GJD93_05030 PF01546 Peptidase family M20/M25/M40 GJD93_05035 PF08085 Entericidin EcnA/B family GJD93_05045 PF04304 Protein of unknown function (DUF454) GJD93_05105 PF00175 Oxidoreductase NAD-binding domain GJD93_05105 PF00258 Flavodoxin GJD93_05105 PF00667 FAD binding domain GJD93_05115 PF12805 FUSC-like inner membrane protein yccS GJD93_05120 PF07690 Major Facilitator Superfamily GJD93_05130 PF03616 Sodium/glutamate symporter GJD93_05135 PF02417 Chromate transporter GJD93_05140 PF01734 Patatin-like phospholipase GJD93_05145 PF03061 Thioesterase superfamily GJD93_05155 PF02492 CobW/HypB/UreG, nucleotide-binding domain GJD93_05155 PF07683 Cobalamin synthesis protein cobW C-terminal domain GJD93_05160 PF07152 YaeQ protein GJD93_05165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJD93_05170 PF00990 Diguanylate cyclase, GGDEF domain GJD93_05175 PF00085 Thioredoxin GJD93_05180 PF08240 Alcohol dehydrogenase GroES-like domain GJD93_05180 PF00107 Zinc-binding dehydrogenase GJD93_05205 PF13614 AAA domain GJD93_05235 PF00872 Transposase, Mutator family GJD93_05250 PF00571 CBS domain GJD93_05250 PF01595 Cyclin M transmembrane N-terminal domain GJD93_05250 PF03471 Transporter associated domain GJD93_05255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_05255 PF03466 LysR substrate binding domain GJD93_05260 PF00463 Isocitrate lyase family GJD93_05270 PF01553 Acyltransferase GJD93_05285 PF00905 Penicillin binding protein transpeptidase domain GJD93_05285 PF03717 Penicillin-binding Protein dimerisation domain GJD93_05300 PF05191 Adenylate kinase, active site lid GJD93_05310 PF00730 HhH-GPD superfamily base excision DNA repair protein GJD93_05310 PF10576 Iron-sulfur binding domain of endonuclease III GJD93_05310 PF00633 Helix-hairpin-helix motif GJD93_05315 PF04060 Putative Fe-S cluster GJD93_05320 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GJD93_05320 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GJD93_05330 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase GJD93_05335 PF02590 Predicted SPOUT methyltransferase GJD93_05340 PF04389 Peptidase family M28 GJD93_05345 PF02190 ATP-dependent protease La (LON) substrate-binding domain GJD93_05345 PF00004 ATPase family associated with various cellular activities (AAA) GJD93_05345 PF05362 Lon protease (S16) C-terminal proteolytic domain GJD93_05350 PF01812 5-formyltetrahydrofolate cyclo-ligase family GJD93_05365 PF02652 L-lactate permease GJD93_05370 PF00392 Bacterial regulatory proteins, gntR family GJD93_05370 PF07729 FCD domain GJD93_05375 PF01070 FMN-dependent dehydrogenase GJD93_05380 PF09330 D-lactate dehydrogenase, membrane binding GJD93_05380 PF01565 FAD binding domain GJD93_05385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_05385 PF03466 LysR substrate binding domain GJD93_05395 PF07694 5TMR of 5TMR-LYT GJD93_05395 PF00990 Diguanylate cyclase, GGDEF domain GJD93_05405 PF01219 Prokaryotic diacylglycerol kinase GJD93_05415 PF00512 His Kinase A (phospho-acceptor) domain GJD93_05415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_05415 PF08521 Two-component sensor kinase N-terminal GJD93_05420 PF00486 Transcriptional regulatory protein, C terminal GJD93_05420 PF00072 Response regulator receiver domain GJD93_05425 PF00884 Sulfatase GJD93_05425 PF08019 Phosphoethanolamine transferase EptA/EptB GJD93_05435 PF09278 MerR, DNA binding GJD93_05435 PF00376 MerR family regulatory protein GJD93_05440 PF00403 Heavy-metal-associated domain GJD93_05455 PF01717 Cobalamin-independent synthase, Catalytic domain GJD93_05460 PF01613 Flavin reductase like domain GJD93_05465 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system GJD93_05490 PF03695 Uncharacterised protein family (UPF0149) GJD93_05495 PF05195 Aminopeptidase P, N-terminal domain GJD93_05495 PF00557 Metallopeptidase family M24 GJD93_05505 PF04221 RelB antitoxin GJD93_05510 PF01494 FAD binding domain GJD93_05515 PF01494 FAD binding domain GJD93_05525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GJD93_05530 PF02021 Uncharacterised protein family UPF0102 GJD93_05535 PF04972 BON domain GJD93_05540 PF00135 Carboxylesterase family GJD93_05545 PF09297 NADH pyrophosphatase zinc ribbon domain GJD93_05545 PF00293 NUDIX domain GJD93_05555 PF00929 Exonuclease GJD93_05560 PF01464 Transglycosylase SLT domain GJD93_05560 PF01464 Transglycosylase SLT domain GJD93_05560 PF01476 LysM domain GJD93_05560 PF01476 LysM domain GJD93_05565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GJD93_05570 PF00528 Binding-protein-dependent transport system inner membrane component GJD93_05575 PF00528 Binding-protein-dependent transport system inner membrane component GJD93_05575 PF12911 N-terminal TM domain of oligopeptide transport permease C GJD93_05580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GJD93_05580 PF00005 ABC transporter GJD93_05585 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_05585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GJD93_05595 PF00324 Amino acid permease GJD93_05605 PF00929 Exonuclease GJD93_05610 PF01979 Amidohydrolase family GJD93_05615 PF00990 Diguanylate cyclase, GGDEF domain GJD93_05615 PF01590 GAF domain GJD93_05615 PF00563 EAL domain GJD93_05615 PF00360 Phytochrome region GJD93_05620 PF00764 Arginosuccinate synthase GJD93_05625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GJD93_05625 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_05660 PF07724 AAA domain (Cdc48 subfamily) GJD93_05660 PF17871 AAA lid domain GJD93_05660 PF10431 C-terminal, D2-small domain, of ClpB protein GJD93_05660 PF00004 ATPase family associated with various cellular activities (AAA) GJD93_05715 PF00691 OmpA family GJD93_05715 PF13488 Glycine zipper GJD93_05720 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal GJD93_05720 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GJD93_05720 PF02769 AIR synthase related protein, C-terminal domain GJD93_05725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GJD93_05725 PF11890 Domain of unknown function (DUF3410) GJD93_05725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GJD93_05730 PF00152 tRNA synthetases class II (D, K and N) GJD93_05735 PF01743 Poly A polymerase head domain GJD93_05735 PF12627 Probable RNA and SrmB- binding site of polymerase A GJD93_05740 PF01515 Phosphate acetyl/butaryl transferase GJD93_05740 PF03949 Malic enzyme, NAD binding domain GJD93_05740 PF00390 Malic enzyme, N-terminal domain GJD93_05745 PF00563 EAL domain GJD93_05745 PF03707 Bacterial signalling protein N terminal repeat GJD93_05745 PF00990 Diguanylate cyclase, GGDEF domain GJD93_05750 PF04452 RNA methyltransferase GJD93_05755 PF02219 Methylenetetrahydrofolate reductase GJD93_05760 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GJD93_05760 PF05221 S-adenosyl-L-homocysteine hydrolase GJD93_05770 PF08238 Sel1 repeat GJD93_05785 PF04055 Radical SAM superfamily GJD93_05790 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_05790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GJD93_05795 PF02668 Taurine catabolism dioxygenase TauD, TfdA family GJD93_05810 PF00557 Metallopeptidase family M24 GJD93_05815 PF00318 Ribosomal protein S2 GJD93_05820 PF00889 Elongation factor TS GJD93_05835 PF03330 Lytic transglycolase GJD93_05835 PF05036 Sporulation related domain GJD93_05840 PF13406 Transglycosylase SLT domain GJD93_05850 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term GJD93_05850 PF14489 QueF-like protein GJD93_05855 PF01061 ABC-2 type transporter GJD93_05860 PF00005 ABC transporter GJD93_05950 PF03796 DnaB-like helicase C terminal domain GJD93_05950 PF00772 DnaB-like helicase N terminal domain GJD93_06005 PF03592 Terminase small subunit GJD93_06105 PF00589 Phage integrase family GJD93_06110 PF13356 Arm DNA-binding domain GJD93_06110 PF00589 Phage integrase family GJD93_06115 PF13356 Arm DNA-binding domain GJD93_06115 PF00589 Phage integrase family GJD93_06155 PF02661 Fic/DOC family GJD93_06165 PF01420 Type I restriction modification DNA specificity domain GJD93_06180 PF12161 HsdM N-terminal domain GJD93_06180 PF02384 N-6 DNA Methylase GJD93_06200 PF00743 Flavin-binding monooxygenase-like GJD93_06205 PF07859 alpha/beta hydrolase fold GJD93_06210 PF00465 Iron-containing alcohol dehydrogenase GJD93_06215 PF00158 Sigma-54 interaction domain GJD93_06220 PF00171 Aldehyde dehydrogenase family GJD93_06225 PF00083 Sugar (and other) transporter GJD93_06250 PF02661 Fic/DOC family GJD93_06250 PF13784 Fic/DOC family N-terminal GJD93_06285 PF00464 Serine hydroxymethyltransferase GJD93_06290 PF01272 Transcription elongation factor, GreA/GreB, C-term GJD93_06290 PF03449 Transcription elongation factor, N-terminal GJD93_06300 PF01548 Transposase GJD93_06300 PF02371 Transposase IS116/IS110/IS902 family GJD93_06315 PF05816 Toxic anion resistance protein (TelA) GJD93_06325 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_06325 PF13192 Thioredoxin domain GJD93_06330 PF00037 4Fe-4S binding domain GJD93_06340 PF03960 ArsC family GJD93_06345 PF01022 Bacterial regulatory protein, arsR family GJD93_06350 PF01758 Sodium Bile acid symporter family GJD93_06355 PF03358 NADPH-dependent FMN reductase GJD93_06360 PF13411 MerR HTH family regulatory protein GJD93_06380 PF00175 Oxidoreductase NAD-binding domain GJD93_06380 PF00970 Oxidoreductase FAD-binding domain GJD93_06385 PF01980 tRNA-methyltransferase O GJD93_06385 PF18389 TrmO C-terminal domain GJD93_06400 PF00437 Type II/IV secretion system protein GJD93_06400 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GJD93_06410 PF00486 Transcriptional regulatory protein, C terminal GJD93_06410 PF00072 Response regulator receiver domain GJD93_06415 PF08521 Two-component sensor kinase N-terminal GJD93_06415 PF00512 His Kinase A (phospho-acceptor) domain GJD93_06415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_06425 PF02581 Thiamine monophosphate synthase GJD93_06435 PF14814 Bifunctional transglycosylase second domain GJD93_06435 PF00912 Transglycosylase GJD93_06435 PF00905 Penicillin binding protein transpeptidase domain GJD93_06440 PF01513 ATP-NAD kinase GJD93_06445 PF07023 Protein of unknown function (DUF1315) GJD93_06450 PF00591 Glycosyl transferase family, a/b domain GJD93_06450 PF02885 Glycosyl transferase family, helical bundle domain GJD93_06455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_06455 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_06455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_06460 PF01817 Chorismate mutase type II GJD93_06460 PF00800 Prephenate dehydratase GJD93_06460 PF01842 ACT domain GJD93_06465 PF00155 Aminotransferase class I and II GJD93_06470 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GJD93_06485 PF03883 Peroxide stress protein YaaA GJD93_06490 PF03441 FAD binding domain of DNA photolyase GJD93_06490 PF00875 DNA photolyase GJD93_06495 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GJD93_06500 PF00768 D-alanyl-D-alanine carboxypeptidase GJD93_06500 PF07943 Penicillin-binding protein 5, C-terminal domain GJD93_06515 PF00849 RNA pseudouridylate synthase GJD93_06600 PF00772 DnaB-like helicase N terminal domain GJD93_06600 PF03796 DnaB-like helicase C terminal domain GJD93_06665 PF04466 Phage terminase large subunit GJD93_06665 PF17288 Terminase RNAseH like domain GJD93_06670 PF06381 Protein of unknown function (DUF1073) GJD93_06675 PF04233 Phage Mu protein F like protein GJD93_06680 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) GJD93_06805 PF00589 Phage integrase family GJD93_06805 PF13356 Arm DNA-binding domain GJD93_06810 PF05016 ParE toxin of type II toxin-antitoxin system, parDE GJD93_06820 PF02567 Phenazine biosynthesis-like protein GJD93_06825 PF00675 Insulinase (Peptidase family M16) GJD93_06825 PF05193 Peptidase M16 inactive domain GJD93_06860 PF02581 Thiamine monophosphate synthase GJD93_06865 PF00202 Aminotransferase class-III GJD93_06870 PF00849 RNA pseudouridylate synthase GJD93_06875 PF18337 RapA N-terminal Tudor like domain GJD93_06875 PF12137 RNA polymerase recycling family C-terminal GJD93_06875 PF00176 SNF2 family N-terminal domain GJD93_06875 PF00271 Helicase conserved C-terminal domain GJD93_06875 PF18339 RapA N-terminal Tudor like domain 1 GJD93_06890 PF00440 Bacterial regulatory proteins, tetR family GJD93_06895 PF00175 Oxidoreductase NAD-binding domain GJD93_06895 PF00970 Oxidoreductase FAD-binding domain GJD93_06895 PF00042 Globin GJD93_06900 PF00487 Fatty acid desaturase GJD93_06915 PF07759 Protein of unknown function (DUF1615) GJD93_06920 PF01207 Dihydrouridine synthase (Dus) GJD93_06925 PF03060 Nitronate monooxygenase GJD93_06955 PF00578 AhpC/TSA family GJD93_06955 PF10417 C-terminal domain of 1-Cys peroxiredoxin GJD93_06960 PF00270 DEAD/DEAH box helicase GJD93_06960 PF11898 Domain of unknown function (DUF3418) GJD93_06960 PF04408 Helicase associated domain (HA2) GJD93_06960 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold GJD93_06960 PF00271 Helicase conserved C-terminal domain GJD93_06965 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GJD93_06965 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GJD93_06970 PF01406 tRNA synthetases class I (C) catalytic domain GJD93_06970 PF09190 DALR domain GJD93_06980 PF01380 SIS domain GJD93_06980 PF00571 CBS domain GJD93_06995 PF03968 OstA-like protein GJD93_07000 PF12399 Branched-chain amino acid ATP-binding cassette transporter GJD93_07000 PF00005 ABC transporter GJD93_07005 PF01205 Uncharacterized protein family UPF0029 GJD93_07020 PF01596 O-methyltransferase GJD93_07030 PF00037 4Fe-4S binding domain GJD93_07030 PF11953 Domain of unknown function (DUF3470) GJD93_07035 PF01624 MutS domain I GJD93_07035 PF00488 MutS domain V GJD93_07035 PF05188 MutS domain II GJD93_07035 PF05192 MutS domain III GJD93_07035 PF05190 MutS family domain IV GJD93_07055 PF00581 Rhodanese-like domain GJD93_07080 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_07085 PF00588 SpoU rRNA Methylase family GJD93_07090 PF01336 OB-fold nucleic acid binding domain GJD93_07090 PF07733 Bacterial DNA polymerase III alpha NTPase domain GJD93_07090 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GJD93_07090 PF02811 PHP domain GJD93_07090 PF14579 Helix-hairpin-helix motif GJD93_07095 PF00528 Binding-protein-dependent transport system inner membrane component GJD93_07100 PF00005 ABC transporter GJD93_07100 PF09383 NIL domain GJD93_07105 PF03180 NLPA lipoprotein GJD93_07115 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GJD93_07115 PF02843 Phosphoribosylglycinamide synthetase, C domain GJD93_07115 PF02844 Phosphoribosylglycinamide synthetase, N domain GJD93_07120 PF02142 MGS-like domain GJD93_07120 PF01808 AICARFT/IMPCHase bienzyme GJD93_07125 PF02954 Bacterial regulatory protein, Fis family GJD93_07155 PF01134 Glucose inhibited division protein A GJD93_07155 PF13932 GidA associated domain GJD93_07170 PF00108 Thiolase, N-terminal domain GJD93_07170 PF02803 Thiolase, C-terminal domain GJD93_07175 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus GJD93_07175 PF00561 alpha/beta hydrolase fold GJD93_07185 PF00106 short chain dehydrogenase GJD93_07190 PF00842 Alanine racemase, C-terminal domain GJD93_07190 PF01168 Alanine racemase, N-terminal domain GJD93_07200 PF03796 DnaB-like helicase C terminal domain GJD93_07200 PF00772 DnaB-like helicase N terminal domain GJD93_07205 PF01281 Ribosomal protein L9, N-terminal domain GJD93_07205 PF03948 Ribosomal protein L9, C-terminal domain GJD93_07210 PF01084 Ribosomal protein S18 GJD93_07215 PF01250 Ribosomal protein S6 GJD93_07220 PF01040 UbiA prenyltransferase family GJD93_07225 PF03626 Prokaryotic Cytochrome C oxidase subunit IV GJD93_07230 PF00510 Cytochrome c oxidase subunit III GJD93_07235 PF00115 Cytochrome C and Quinol oxidase polypeptide I GJD93_07240 PF06481 COX Aromatic Rich Motif GJD93_07240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GJD93_07250 PF00391 PEP-utilising enzyme, mobile domain GJD93_07250 PF02896 PEP-utilising enzyme, TIM barrel domain GJD93_07250 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GJD93_07255 PF03618 Kinase/pyrophosphorylase GJD93_07265 PF00296 Luciferase-like monooxygenase GJD93_07280 PF03462 PCRF domain GJD93_07280 PF00472 RF-1 domain GJD93_07285 PF05175 Methyltransferase small domain GJD93_07285 PF17827 PrmC N-terminal domain GJD93_07290 PF01062 Bestrophin, RFP-TM, chloride channel GJD93_07305 PF00106 short chain dehydrogenase GJD93_07310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_07310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_07310 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_07315 PF13193 AMP-binding enzyme C-terminal domain GJD93_07315 PF00501 AMP-binding enzyme GJD93_07325 PF00899 ThiF family GJD93_07330 PF03109 ABC1 family GJD93_07335 PF02152 Dihydroneopterin aldolase GJD93_07345 PF03232 Ubiquinone biosynthesis protein COQ7 GJD93_07350 PF07690 Major Facilitator Superfamily GJD93_07355 PF17243 POTRA domain TamA domain 1 GJD93_07355 PF07244 Surface antigen variable number repeat GJD93_07355 PF01103 Surface antigen GJD93_07375 PF11791 Aconitate B N-terminal domain GJD93_07375 PF00330 Aconitase family (aconitate hydratase) GJD93_07375 PF06434 Aconitate hydratase 2 N-terminus GJD93_07390 PF01433 Peptidase family M1 domain GJD93_07390 PF11940 Domain of unknown function (DUF3458) Ig-like fold GJD93_07390 PF17432 Domain of unknown function (DUF3458_C) ARM repeats GJD93_07400 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_07400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GJD93_07410 PF00582 Universal stress protein family GJD93_07415 PF00582 Universal stress protein family GJD93_07425 PF03594 Benzoate membrane transport protein GJD93_07430 PF01810 LysE type translocator GJD93_07435 PF00923 Transaldolase/Fructose-6-phosphate aldolase GJD93_07440 PF03466 LysR substrate binding domain GJD93_07440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_07450 PF02803 Thiolase, C-terminal domain GJD93_07450 PF00108 Thiolase, N-terminal domain GJD93_07470 PF12170 DNA polymerase III tau subunit V interacting with alpha GJD93_07470 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding GJD93_07470 PF12169 DNA polymerase III subunits gamma and tau domain III GJD93_07475 PF03061 Thioesterase superfamily GJD93_07480 PF00465 Iron-containing alcohol dehydrogenase GJD93_07485 PF01451 Low molecular weight phosphotyrosine protein phosphatase GJD93_07490 PF01565 FAD binding domain GJD93_07490 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GJD93_07505 PF00072 Response regulator receiver domain GJD93_07505 PF00196 Bacterial regulatory proteins, luxR family GJD93_07510 PF13492 GAF domain GJD93_07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_07510 PF07730 Histidine kinase GJD93_07515 PF08007 Cupin superfamily protein GJD93_07520 PF02545 Maf-like protein GJD93_07530 PF00162 Phosphoglycerate kinase GJD93_07540 PF01116 Fructose-bisphosphate aldolase class-II GJD93_07555 PF00881 Nitroreductase family GJD93_07560 PF03328 HpcH/HpaI aldolase/citrate lyase family GJD93_07565 PF00149 Calcineurin-like phosphoesterase GJD93_07570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GJD93_07575 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain GJD93_07575 PF00749 tRNA synthetases class I (E and Q), catalytic domain GJD93_07600 PF05958 tRNA (Uracil-5-)-methyltransferase GJD93_07605 PF02146 Sir2 family GJD93_07610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_07610 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_07610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_07615 PF12697 Alpha/beta hydrolase family GJD93_07625 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_07625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GJD93_07645 PF00117 Glutamine amidotransferase class-I GJD93_07645 PF06418 CTP synthase N-terminus GJD93_07650 PF00793 DAHP synthetase I family GJD93_07655 PF03952 Enolase, N-terminal domain GJD93_07655 PF00113 Enolase, C-terminal TIM barrel domain GJD93_07660 PF04977 Septum formation initiator GJD93_07665 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GJD93_07670 PF01098 Cell cycle protein GJD93_07685 PF02542 YgbB family GJD93_07695 PF00793 DAHP synthetase I family GJD93_07700 PF01925 Sulfite exporter TauE/SafE GJD93_07705 PF02684 Lipid-A-disaccharide synthetase GJD93_07710 PF12852 Cupin GJD93_07710 PF12833 Helix-turn-helix domain GJD93_07715 PF00487 Fatty acid desaturase GJD93_07725 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system GJD93_07730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_07730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_07730 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_07735 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_07735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_07735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_07740 PF03109 ABC1 family GJD93_07755 PF05175 Methyltransferase small domain GJD93_07760 PF01264 Chorismate synthase GJD93_07770 PF08173 Membrane bound YbgT-like protein GJD93_07775 PF02322 Cytochrome bd terminal oxidase subunit II GJD93_07780 PF01654 Cytochrome bd terminal oxidase subunit I GJD93_07790 PF07290 Protein of unknown function (DUF1449) GJD93_07800 PF00294 pfkB family carbohydrate kinase GJD93_07810 PF08367 Peptidase M16C associated GJD93_07810 PF00675 Insulinase (Peptidase family M16) GJD93_07810 PF05193 Peptidase M16 inactive domain GJD93_07815 PF02253 Phospholipase A1 GJD93_07820 PF02386 Cation transport protein GJD93_07825 PF02254 TrkA-N domain GJD93_07825 PF02080 TrkA-C domain GJD93_07830 PF00291 Pyridoxal-phosphate dependent enzyme GJD93_07830 PF00585 C-terminal regulatory domain of Threonine dehydratase GJD93_07835 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) GJD93_07845 PF02774 Semialdehyde dehydrogenase, dimerisation domain GJD93_07845 PF01118 Semialdehyde dehydrogenase, NAD binding domain GJD93_07855 PF02617 ATP-dependent Clp protease adaptor protein ClpS GJD93_07860 PF00004 ATPase family associated with various cellular activities (AAA) GJD93_07860 PF07724 AAA domain (Cdc48 subfamily) GJD93_07860 PF17871 AAA lid domain GJD93_07860 PF10431 C-terminal, D2-small domain, of ClpB protein GJD93_07860 PF02861 Clp amino terminal domain, pathogenicity island component GJD93_07865 PF02694 Uncharacterised BCR, YnfA/UPF0060 family GJD93_07875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GJD93_07875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GJD93_07880 PF00440 Bacterial regulatory proteins, tetR family GJD93_07890 PF00285 Citrate synthase, C-terminal domain GJD93_07905 PF18146 Damage-inducible protein CinA KH domain GJD93_07905 PF00994 Probable molybdopterin binding domain GJD93_07905 PF02464 Competence-damaged protein GJD93_07945 PF12832 MFS_1 like family GJD93_07950 PF01425 Amidase GJD93_07955 PF00990 Diguanylate cyclase, GGDEF domain GJD93_07955 PF17151 Periplasmic sensor domain GJD93_07965 PF00924 Mechanosensitive ion channel GJD93_07970 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) GJD93_07975 PF06912 Protein of unknown function (DUF1275) GJD93_07980 PF00375 Sodium:dicarboxylate symporter family GJD93_07985 PF00916 Sulfate permease family GJD93_07985 PF01740 STAS domain GJD93_07995 PF01553 Acyltransferase GJD93_08000 PF00291 Pyridoxal-phosphate dependent enzyme GJD93_08005 PF00440 Bacterial regulatory proteins, tetR family GJD93_08005 PF08360 QacR-like protein, C-terminal region GJD93_08010 PF00108 Thiolase, N-terminal domain GJD93_08010 PF02803 Thiolase, C-terminal domain GJD93_08015 PF12146 Serine aminopeptidase, S33 GJD93_08020 PF00108 Thiolase, N-terminal domain GJD93_08020 PF02803 Thiolase, C-terminal domain GJD93_08025 PF01144 Coenzyme A transferase GJD93_08030 PF01144 Coenzyme A transferase GJD93_08035 PF03594 Benzoate membrane transport protein GJD93_08040 PF00106 short chain dehydrogenase GJD93_08045 PF00111 2Fe-2S iron-sulfur cluster binding domain GJD93_08045 PF00970 Oxidoreductase FAD-binding domain GJD93_08045 PF00175 Oxidoreductase NAD-binding domain GJD93_08050 PF00866 Ring hydroxylating beta subunit GJD93_08055 PF00848 Ring hydroxylating alpha subunit (catalytic domain) GJD93_08055 PF00355 Rieske [2Fe-2S] domain GJD93_08060 PF04444 Catechol dioxygenase N terminus GJD93_08060 PF00775 Dioxygenase GJD93_08065 PF02426 Muconolactone delta-isomerase GJD93_08070 PF13378 Enolase C-terminal domain-like GJD93_08070 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GJD93_08075 PF03466 LysR substrate binding domain GJD93_08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_08080 PF07690 Major Facilitator Superfamily GJD93_08090 PF00155 Aminotransferase class I and II GJD93_08090 PF00392 Bacterial regulatory proteins, gntR family GJD93_08110 PF01638 HxlR-like helix-turn-helix GJD93_08130 PF02635 DsrE/DsrF-like family GJD93_08135 PF16363 GDP-mannose 4,6 dehydratase GJD93_08140 PF10415 Fumarase C C-terminus GJD93_08140 PF00206 Lyase GJD93_08160 PF03466 LysR substrate binding domain GJD93_08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_08165 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_08165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_08165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_08180 PF00106 short chain dehydrogenase GJD93_08200 PF13091 PLD-like domain GJD93_08205 PF00107 Zinc-binding dehydrogenase GJD93_08205 PF08240 Alcohol dehydrogenase GroES-like domain GJD93_08210 PF00793 DAHP synthetase I family GJD93_08220 PF07690 Major Facilitator Superfamily GJD93_08225 PF01597 Glycine cleavage H-protein GJD93_08230 PF12833 Helix-turn-helix domain GJD93_08230 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJD93_08235 PF00664 ABC transporter transmembrane region GJD93_08235 PF00005 ABC transporter GJD93_08260 PF01636 Phosphotransferase enzyme family GJD93_08270 PF00717 Peptidase S24-like GJD93_08275 PF13438 Domain of unknown function (DUF4113) GJD93_08275 PF11798 IMS family HHH motif GJD93_08275 PF11799 impB/mucB/samB family C-terminal domain GJD93_08275 PF00817 impB/mucB/samB family GJD93_08280 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system GJD93_08290 PF18381 YcaO cyclodehydratase C-terminal domain GJD93_08290 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding GJD93_08295 PF02627 Carboxymuconolactone decarboxylase family GJD93_08305 PF11412 Disulphide bond corrector protein DsbC GJD93_08305 PF02683 Cytochrome C biogenesis protein transmembrane region GJD93_08310 PF00486 Transcriptional regulatory protein, C terminal GJD93_08310 PF00072 Response regulator receiver domain GJD93_08315 PF08521 Two-component sensor kinase N-terminal GJD93_08315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_08315 PF00512 His Kinase A (phospho-acceptor) domain GJD93_08320 PF01220 Dehydroquinase class II GJD93_08325 PF00364 Biotin-requiring enzyme GJD93_08330 PF02785 Biotin carboxylase C-terminal domain GJD93_08330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GJD93_08330 PF00289 Biotin carboxylase, N-terminal domain GJD93_08335 PF12697 Alpha/beta hydrolase family GJD93_08340 PF00753 Metallo-beta-lactamase superfamily GJD93_08350 PF04143 Sulphur transport GJD93_08355 PF04073 Aminoacyl-tRNA editing domain GJD93_08360 PF02690 Na+/Pi-cotransporter GJD93_08410 PF00448 SRP54-type protein, GTPase domain GJD93_08410 PF02881 SRP54-type protein, helical bundle domain GJD93_08415 PF00675 Insulinase (Peptidase family M16) GJD93_08415 PF05193 Peptidase M16 inactive domain GJD93_08445 PF00571 CBS domain GJD93_08450 PF00291 Pyridoxal-phosphate dependent enzyme GJD93_08460 PF17862 AAA+ lid domain GJD93_08460 PF00004 ATPase family associated with various cellular activities (AAA) GJD93_08460 PF01434 Peptidase family M41 GJD93_08470 PF05166 YcgL domain GJD93_08475 PF01612 3'-5' exonuclease GJD93_08475 PF00570 HRDC domain GJD93_08480 PF02132 RecR protein GJD93_08480 PF13662 Toprim domain GJD93_08485 PF02575 YbaB/EbfC DNA-binding family GJD93_08490 PF01053 Cys/Met metabolism PLP-dependent enzyme GJD93_08500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GJD93_08500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GJD93_08510 PF01230 HIT domain GJD93_08515 PF00267 Gram-negative porin GJD93_08535 PF09312 SurA N-terminal domain GJD93_08540 PF00216 Bacterial DNA-binding protein GJD93_08555 PF02082 Transcriptional regulator GJD93_08560 PF00266 Aminotransferase class-V GJD93_08565 PF01592 NifU-like N terminal domain GJD93_08570 PF01521 Iron-sulphur cluster biosynthesis GJD93_08575 PF00226 DnaJ domain GJD93_08575 PF07743 HSCB C-terminal oligomerisation domain GJD93_08580 PF00012 Hsp70 protein GJD93_08585 PF00111 2Fe-2S iron-sulfur cluster binding domain GJD93_08590 PF00211 Adenylate and Guanylate cyclase catalytic domain GJD93_08600 PF00270 DEAD/DEAH box helicase GJD93_08600 PF02559 CarD-like/TRCF domain GJD93_08600 PF17757 UvrB interaction domain GJD93_08600 PF03461 TRCF domain GJD93_08600 PF00271 Helicase conserved C-terminal domain GJD93_08615 PF03737 Aldolase/RraA GJD93_08620 PF13460 NAD(P)H-binding GJD93_08625 PF01649 Ribosomal protein S20 GJD93_08640 PF00459 Inositol monophosphatase family GJD93_08655 PF13419 Haloacid dehalogenase-like hydrolase GJD93_08660 PF01479 S4 domain GJD93_08665 PF00154 recA bacterial DNA recombination protein GJD93_08670 PF02631 RecX family GJD93_08685 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 GJD93_08685 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_08690 PF07977 FabA-like domain GJD93_08695 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_08695 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD GJD93_08705 PF07244 Surface antigen variable number repeat GJD93_08705 PF01103 Surface antigen GJD93_08710 PF02163 Peptidase family M50 GJD93_08710 PF17820 PDZ domain GJD93_08710 PF13180 PDZ domain GJD93_08715 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GJD93_08715 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GJD93_08715 PF13288 DXP reductoisomerase C-terminal domain GJD93_08725 PF01255 Putative undecaprenyl diphosphate synthase GJD93_08730 PF01765 Ribosome recycling factor GJD93_08735 PF00696 Amino acid kinase family GJD93_08740 PF00919 Uncharacterized protein family UPF0004 GJD93_08740 PF04055 Radical SAM superfamily GJD93_08740 PF18693 TRAM domain GJD93_08745 PF00989 PAS fold GJD93_08745 PF00512 His Kinase A (phospho-acceptor) domain GJD93_08745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_08750 PF02954 Bacterial regulatory protein, Fis family GJD93_08750 PF00158 Sigma-54 interaction domain GJD93_08750 PF00072 Response regulator receiver domain GJD93_08760 PF02824 TGS domain GJD93_08760 PF04607 Region found in RelA / SpoT proteins GJD93_08760 PF13291 ACT domain GJD93_08765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_08765 PF03466 LysR substrate binding domain GJD93_08780 PF13007 Transposase C of IS166 homeodomain GJD93_08780 PF13817 IS66 C-terminal element GJD93_08780 PF13005 zinc-finger binding domain of transposase IS66 GJD93_08780 PF03050 Transposase IS66 family GJD93_08785 PF00557 Metallopeptidase family M24 GJD93_08790 PF01385 Probable transposase GJD93_08790 PF07282 Putative transposase DNA-binding domain GJD93_08790 PF12323 Helix-turn-helix domain GJD93_08795 PF00145 C-5 cytosine-specific DNA methylase GJD93_08795 PF13411 MerR HTH family regulatory protein GJD93_08800 PF05525 Branched-chain amino acid transport protein GJD93_08820 PF03741 Integral membrane protein TerC family GJD93_08820 PF03471 Transporter associated domain GJD93_08835 PF00171 Aldehyde dehydrogenase family GJD93_08840 PF01274 Malate synthase GJD93_08845 PF03969 AFG1-like ATPase GJD93_08850 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJD93_08850 PF12833 Helix-turn-helix domain GJD93_08855 PF00743 Flavin-binding monooxygenase-like GJD93_08860 PF03956 Lysine exporter LysO GJD93_08865 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GJD93_08875 PF00216 Bacterial DNA-binding protein GJD93_08880 PF00575 S1 RNA binding domain GJD93_08885 PF02224 Cytidylate kinase GJD93_08895 PF14437 MafB19-like deaminase GJD93_08905 PF03167 Uracil DNA glycosylase superfamily GJD93_08915 PF03934 Type II secretion system (T2SS), protein K GJD93_08920 PF11612 Type II secretion system (T2SS), protein J GJD93_08920 PF07963 Prokaryotic N-terminal methylation motif GJD93_08925 PF07963 Prokaryotic N-terminal methylation motif GJD93_08925 PF02501 Type II secretion system (T2SS), protein I GJD93_08930 PF07963 Prokaryotic N-terminal methylation motif GJD93_08940 PF01026 TatD related DNase GJD93_08950 PF09115 DNA polymerase III, delta subunit, C terminal GJD93_08955 PF02348 Cytidylyltransferase GJD93_08960 PF02606 Tetraacyldisaccharide-1-P 4'-kinase GJD93_08965 PF00005 ABC transporter GJD93_08965 PF00664 ABC transporter transmembrane region GJD93_08975 PF01618 MotA/TolQ/ExbB proton channel family GJD93_08980 PF02195 ParB-like nuclease domain GJD93_08980 PF17762 HTH domain found in ParB protein GJD93_08985 PF13614 AAA domain GJD93_08990 PF02527 rRNA small subunit methyltransferase G GJD93_08995 PF00483 Nucleotidyl transferase GJD93_09000 PF01636 Phosphotransferase enzyme family GJD93_09005 PF04453 LPS transport system D GJD93_09005 PF03968 OstA-like protein GJD93_09010 PF09312 SurA N-terminal domain GJD93_09010 PF00639 PPIC-type PPIASE domain GJD93_09015 PF17209 Hfq protein GJD93_09025 PF08676 MutL C terminal dimerisation domain GJD93_09025 PF01119 DNA mismatch repair protein, C-terminal domain GJD93_09030 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GJD93_09035 PF00849 RNA pseudouridylate synthase GJD93_09035 PF01479 S4 domain GJD93_09050 PF00849 RNA pseudouridylate synthase GJD93_09050 PF01479 S4 domain GJD93_09055 PF04284 Protein of unknown function (DUF441) GJD93_09060 PF07690 Major Facilitator Superfamily GJD93_09065 PF03466 LysR substrate binding domain GJD93_09065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_09070 PF00520 Ion transport protein GJD93_09070 PF00027 Cyclic nucleotide-binding domain GJD93_09075 PF14493 Helix-turn-helix domain GJD93_09075 PF05970 PIF1-like helicase GJD93_09085 PF00465 Iron-containing alcohol dehydrogenase GJD93_09100 PF00171 Aldehyde dehydrogenase family GJD93_09105 PF04264 YceI-like domain GJD93_09120 PF02780 Transketolase, C-terminal domain GJD93_09120 PF00456 Transketolase, thiamine diphosphate binding domain GJD93_09120 PF02779 Transketolase, pyrimidine binding domain GJD93_09125 PF02772 S-adenosylmethionine synthetase, central domain GJD93_09125 PF00438 S-adenosylmethionine synthetase, N-terminal domain GJD93_09125 PF02773 S-adenosylmethionine synthetase, C-terminal domain GJD93_09145 PF01810 LysE type translocator GJD93_09160 PF02075 Crossover junction endodeoxyribonuclease RuvC GJD93_09165 PF01256 Carbohydrate kinase GJD93_09165 PF03853 YjeF-related protein N-terminus GJD93_09170 PF08331 Domain of unknown function (DUF1730) GJD93_09175 PF06968 Biotin and Thiamin Synthesis associated domain GJD93_09175 PF04055 Radical SAM superfamily GJD93_09185 PF02654 Cobalamin-5-phosphate synthase GJD93_09195 PF02277 Phosphoribosyltransferase GJD93_09200 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase GJD93_09210 PF09313 Domain of unknown function (DUF1971) GJD93_09210 PF03848 Tellurite resistance protein TehB GJD93_09220 PF00589 Phage integrase family GJD93_09255 PF13737 Transposase DDE domain GJD93_09260 PF05658 Head domain of trimeric autotransporter adhesin GJD93_09260 PF05662 Coiled stalk of trimeric autotransporter adhesin GJD93_09260 PF13018 Extended Signal Peptide of Type V secretion system GJD93_09260 PF03895 YadA-like membrane anchor domain GJD93_09290 PF01709 Transcriptional regulator GJD93_09310 PF06071 Protein of unknown function (DUF933) GJD93_09310 PF01926 50S ribosome-binding GTPase GJD93_09320 PF03591 AzlC protein GJD93_09325 PF05437 Branched-chain amino acid transport protein (AzlD) GJD93_09330 PF02222 ATP-grasp domain GJD93_09335 PF01909 Nucleotidyltransferase domain GJD93_09335 PF08335 GlnD PII-uridylyltransferase GJD93_09335 PF01966 HD domain GJD93_09340 PF00155 Aminotransferase class I and II GJD93_09345 PF00255 Glutathione peroxidase GJD93_09350 PF01641 SelR domain GJD93_09355 PF00155 Aminotransferase class I and II GJD93_09360 PF16123 Hydroxyacylglutathione hydrolase C-terminus GJD93_09360 PF00753 Metallo-beta-lactamase superfamily GJD93_09390 PF00069 Protein kinase domain GJD93_09390 PF03793 PASTA domain GJD93_09415 PF00814 Glycoprotease family GJD93_09420 PF01165 Ribosomal protein S21 GJD93_09425 PF09424 Yqey-like protein GJD93_09440 PF01435 Peptidase family M48 GJD93_09445 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GJD93_09445 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GJD93_09460 PF00156 Phosphoribosyl transferase domain GJD93_09465 PF02674 Colicin V production protein GJD93_09470 PF01180 Dihydroorotate dehydrogenase GJD93_09490 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GJD93_09490 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GJD93_09495 PF00881 Nitroreductase family GJD93_09505 PF00271 Helicase conserved C-terminal domain GJD93_09505 PF00270 DEAD/DEAH box helicase GJD93_09510 PF00313 'Cold-shock' DNA-binding domain GJD93_09520 PF04542 Sigma-70 region 2 GJD93_09520 PF04545 Sigma-70, region 4 GJD93_09520 PF00140 Sigma-70 factor, region 1.2 GJD93_09525 PF04241 Protein of unknown function (DUF423) GJD93_09535 PF05690 Thiazole biosynthesis protein ThiG GJD93_09540 PF02798 Glutathione S-transferase, N-terminal domain GJD93_09540 PF00043 Glutathione S-transferase, C-terminal domain GJD93_09545 PF00916 Sulfate permease family GJD93_09545 PF01740 STAS domain GJD93_09550 PF02390 Putative methyltransferase GJD93_09570 PF06968 Biotin and Thiamin Synthesis associated domain GJD93_09570 PF04055 Radical SAM superfamily GJD93_09575 PF00501 AMP-binding enzyme GJD93_09575 PF13193 AMP-binding enzyme C-terminal domain GJD93_09580 PF17925 Tetracyclin repressor-like, C-terminal domain GJD93_09580 PF00440 Bacterial regulatory proteins, tetR family GJD93_09585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GJD93_09585 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_09585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_09590 PF01039 Carboxyl transferase domain GJD93_09595 PF00378 Enoyl-CoA hydratase/isomerase GJD93_09600 PF02785 Biotin carboxylase C-terminal domain GJD93_09600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GJD93_09600 PF00289 Biotin carboxylase, N-terminal domain GJD93_09600 PF00364 Biotin-requiring enzyme GJD93_09605 PF00682 HMGL-like GJD93_09610 PF01144 Coenzyme A transferase GJD93_09615 PF01144 Coenzyme A transferase GJD93_09620 PF01389 OmpA-like transmembrane domain GJD93_09620 PF00691 OmpA family GJD93_09635 PF01979 Amidohydrolase family GJD93_09640 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GJD93_09640 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GJD93_09650 PF01170 Putative RNA methylase family UPF0020 GJD93_09650 PF02926 THUMP domain GJD93_09650 PF10672 S-adenosylmethionine-dependent methyltransferase GJD93_09660 PF10431 C-terminal, D2-small domain, of ClpB protein GJD93_09660 PF02861 Clp amino terminal domain, pathogenicity island component GJD93_09660 PF00004 ATPase family associated with various cellular activities (AAA) GJD93_09660 PF17871 AAA lid domain GJD93_09660 PF07724 AAA domain (Cdc48 subfamily) GJD93_09665 PF02566 OsmC-like protein GJD93_09670 PF13545 Crp-like helix-turn-helix domain GJD93_09670 PF00027 Cyclic nucleotide-binding domain GJD93_09675 PF00248 Aldo/keto reductase family GJD93_09690 PF00709 Adenylosuccinate synthetase GJD93_09695 PF13393 Histidyl-tRNA synthetase GJD93_09705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GJD93_09705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GJD93_09710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GJD93_09710 PF02272 DHHA1 domain GJD93_09710 PF01411 tRNA synthetases class II (A) GJD93_09715 PF00696 Amino acid kinase family GJD93_09715 PF13840 ACT domain GJD93_09715 PF01842 ACT domain GJD93_09720 PF02599 Global regulator protein family GJD93_09725 PF01351 Ribonuclease HII GJD93_09740 PF00962 Adenosine/AMP deaminase GJD93_09745 PF00860 Permease family GJD93_09765 PF01841 Transglutaminase-like superfamily GJD93_09765 PF13559 Domain of unknown function (DUF4129) GJD93_09765 PF11992 Domain of unknown function (DUF3488) GJD93_09775 PF17863 AAA lid domain GJD93_09775 PF07726 ATPase family associated with various cellular activities (AAA) GJD93_09780 PF04328 Selenoprotein, putative GJD93_09785 PF13722 5TM C-terminal transporter carbon starvation CstA GJD93_09785 PF02554 Carbon starvation protein CstA GJD93_09790 PF08207 Elongation factor P (EF-P) KOW-like domain GJD93_09790 PF01132 Elongation factor P (EF-P) OB domain GJD93_09790 PF09285 Elongation factor P, C-terminal GJD93_09795 PF04055 Radical SAM superfamily GJD93_09810 PF01197 Ribosomal protein L31 GJD93_09815 PF13593 SBF-like CPA transporter family (DUF4137) GJD93_09820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GJD93_09825 PF07690 Major Facilitator Superfamily GJD93_09830 PF05362 Lon protease (S16) C-terminal proteolytic domain GJD93_09830 PF13654 AAA domain GJD93_09835 PF00462 Glutaredoxin GJD93_09840 PF00202 Aminotransferase class-III GJD93_09845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_09845 PF03466 LysR substrate binding domain GJD93_09850 PF01551 Peptidase family M23 GJD93_09850 PF01476 LysM domain GJD93_09855 PF01975 Survival protein SurE GJD93_09870 PF07943 Penicillin-binding protein 5, C-terminal domain GJD93_09870 PF00768 D-alanyl-D-alanine carboxypeptidase GJD93_09875 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_09895 PF00293 NUDIX domain GJD93_09905 PF04356 Protein of unknown function (DUF489) GJD93_09910 PF00206 Lyase GJD93_09910 PF08328 Adenylosuccinate lyase C-terminal GJD93_09930 PF08496 Peptidase family S49 N-terminal GJD93_09930 PF01343 Peptidase family S49 GJD93_09940 PF00005 ABC transporter GJD93_09945 PF00528 Binding-protein-dependent transport system inner membrane component GJD93_09950 PF00528 Binding-protein-dependent transport system inner membrane component GJD93_09960 PF00282 Pyridoxal-dependent decarboxylase conserved domain GJD93_09965 PF00202 Aminotransferase class-III GJD93_09975 PF00696 Amino acid kinase family GJD93_09975 PF01472 PUA domain GJD93_09980 PF01018 GTP1/OBG GJD93_09980 PF01926 50S ribosome-binding GTPase GJD93_09990 PF07690 Major Facilitator Superfamily GJD93_09995 PF01638 HxlR-like helix-turn-helix GJD93_10000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GJD93_10000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GJD93_10005 PF00892 EamA-like transporter family GJD93_10015 PF17757 UvrB interaction domain GJD93_10015 PF04851 Type III restriction enzyme, res subunit GJD93_10015 PF00271 Helicase conserved C-terminal domain GJD93_10015 PF02151 UvrB/uvrC motif GJD93_10015 PF12344 Ultra-violet resistance protein B GJD93_10035 PF00892 EamA-like transporter family GJD93_10050 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) GJD93_10055 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ GJD93_10060 PF02565 Recombination protein O C terminal GJD93_10060 PF11967 Recombination protein O N terminal GJD93_10070 PF07650 KH domain GJD93_10070 PF01926 50S ribosome-binding GTPase GJD93_10075 PF00035 Double-stranded RNA binding motif GJD93_10075 PF14622 Ribonuclease-III-like GJD93_10085 PF10502 Signal peptidase, peptidase S26 GJD93_10090 PF06421 GTP-binding protein LepA C-terminus GJD93_10090 PF00679 Elongation factor G C-terminus GJD93_10090 PF00009 Elongation factor Tu GTP binding domain GJD93_10090 PF03144 Elongation factor Tu domain 2 GJD93_10100 PF13180 PDZ domain GJD93_10105 PF02910 Fumarate reductase flavoprotein C-term GJD93_10105 PF00890 FAD binding domain GJD93_10110 PF13419 Haloacid dehalogenase-like hydrolase GJD93_10120 PF02223 Thymidylate kinase GJD93_10125 PF02618 YceG-like family GJD93_10145 PF00528 Binding-protein-dependent transport system inner membrane component GJD93_10150 PF00528 Binding-protein-dependent transport system inner membrane component GJD93_10155 PF00005 ABC transporter GJD93_10155 PF12857 TOBE-like domain GJD93_10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_10160 PF03466 LysR substrate binding domain GJD93_10175 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal GJD93_10175 PF14602 Hexapeptide repeat of succinyl-transferase GJD93_10175 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_10185 PF06508 Queuosine biosynthesis protein QueC GJD93_10195 PF00578 AhpC/TSA family GJD93_10200 PF01467 Cytidylyltransferase-like GJD93_10200 PF00293 NUDIX domain GJD93_10205 PF00378 Enoyl-CoA hydratase/isomerase GJD93_10210 PF00881 Nitroreductase family GJD93_10220 PF01966 HD domain GJD93_10225 PF01330 RuvA N terminal domain GJD93_10225 PF07499 RuvA, C-terminal domain GJD93_10230 PF05496 Holliday junction DNA helicase RuvB P-loop domain GJD93_10230 PF05491 RuvB C-terminal winged helix domain GJD93_10230 PF17864 RuvB AAA lid domain GJD93_10240 PF03061 Thioesterase superfamily GJD93_10245 PF01618 MotA/TolQ/ExbB proton channel family GJD93_10250 PF02472 Biopolymer transport protein ExbD/TolR GJD93_10260 PF04052 TolB amino-terminal domain GJD93_10260 PF07676 WD40-like Beta Propeller Repeat GJD93_10265 PF00691 OmpA family GJD93_10280 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain GJD93_10285 PF08032 RNA 2'-O ribose methyltransferase substrate binding GJD93_10285 PF00588 SpoU rRNA Methylase family GJD93_10315 PF08299 Bacterial dnaA protein helix-turn-helix GJD93_10315 PF00308 Bacterial dnaA protein GJD93_10315 PF11638 DnaA N-terminal domain GJD93_10320 PF01594 AI-2E family transporter GJD93_10325 PF00586 AIR synthase related protein, N-terminal domain GJD93_10325 PF02769 AIR synthase related protein, C-terminal domain GJD93_10330 PF00551 Formyl transferase GJD93_10340 PF06965 Na+/H+ antiporter 1 GJD93_10340 PF01343 Peptidase family S49 GJD93_10350 PF03772 Competence protein GJD93_10350 PF13567 Domain of unknown function (DUF4131) GJD93_10350 PF00753 Metallo-beta-lactamase superfamily GJD93_10355 PF00005 ABC transporter GJD93_10360 PF12704 MacB-like periplasmic core domain GJD93_10360 PF02687 FtsX-like permease family GJD93_10375 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 GJD93_10385 PF00266 Aminotransferase class-V GJD93_10410 PF13533 Biotin-lipoyl like GJD93_10430 PF03989 DNA gyrase C-terminal domain, beta-propeller GJD93_10430 PF00521 DNA gyrase/topoisomerase IV, subunit A GJD93_10435 PF00766 Electron transfer flavoprotein FAD-binding domain GJD93_10435 PF01012 Electron transfer flavoprotein domain GJD93_10440 PF01012 Electron transfer flavoprotein domain GJD93_10450 PF00589 Phage integrase family GJD93_10450 PF02899 Phage integrase, N-terminal SAM-like domain GJD93_10455 PF00561 alpha/beta hydrolase fold GJD93_10460 PF01678 Diaminopimelate epimerase GJD93_10465 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GJD93_10465 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GJD93_10475 PF01235 Sodium:alanine symporter family GJD93_10480 PF18073 Rubredoxin metal binding domain GJD93_10490 PF13180 PDZ domain GJD93_10490 PF17820 PDZ domain GJD93_10495 PF01784 NIF3 (NGG1p interacting factor 3) GJD93_10500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GJD93_10500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GJD93_10535 PF01040 UbiA prenyltransferase family GJD93_10540 PF04345 Chorismate lyase GJD93_10550 PF00117 Glutamine amidotransferase class-I GJD93_10555 PF02885 Glycosyl transferase family, helical bundle domain GJD93_10555 PF00591 Glycosyl transferase family, a/b domain GJD93_10560 PF00218 Indole-3-glycerol phosphate synthase GJD93_10575 PF00990 Diguanylate cyclase, GGDEF domain GJD93_10590 PF05675 Protein of unknown function (DUF817) GJD93_10595 PF01208 Uroporphyrinogen decarboxylase (URO-D) GJD93_10605 PF17954 Quercetinase C-terminal cupin domain GJD93_10605 PF02678 Pirin GJD93_10620 PF04444 Catechol dioxygenase N terminus GJD93_10620 PF00775 Dioxygenase GJD93_10625 PF00111 2Fe-2S iron-sulfur cluster binding domain GJD93_10625 PF00175 Oxidoreductase NAD-binding domain GJD93_10625 PF00970 Oxidoreductase FAD-binding domain GJD93_10635 PF04945 YHS domain GJD93_10635 PF02332 Methane/Phenol/Toluene Hydroxylase GJD93_10640 PF02406 MmoB/DmpM family GJD93_10645 PF02332 Methane/Phenol/Toluene Hydroxylase GJD93_10650 PF06099 Phenol hydroxylase subunit GJD93_10655 PF02954 Bacterial regulatory protein, Fis family GJD93_10655 PF00158 Sigma-54 interaction domain GJD93_10655 PF06505 Activator of aromatic catabolism GJD93_10655 PF02830 V4R domain GJD93_10690 PF00009 Elongation factor Tu GTP binding domain GJD93_10695 PF01507 Phosphoadenosine phosphosulfate reductase family GJD93_10705 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB GJD93_10710 PF01381 Helix-turn-helix GJD93_10715 PF01336 OB-fold nucleic acid binding domain GJD93_10715 PF00152 tRNA synthetases class II (D, K and N) GJD93_10725 PF00156 Phosphoribosyl transferase domain GJD93_10730 PF00301 Rubredoxin GJD93_10735 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_10735 PF18113 Rubredoxin binding C-terminal domain GJD93_10740 PF00561 alpha/beta hydrolase fold GJD93_10745 PF03466 LysR substrate binding domain GJD93_10745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_10755 PF02503 Polyphosphate kinase middle domain GJD93_10755 PF13090 Polyphosphate kinase C-terminal domain 2 GJD93_10755 PF17941 Polyphosphate kinase C-terminal domain 1 GJD93_10755 PF13089 Polyphosphate kinase N-terminal domain GJD93_10760 PF00912 Transglycosylase GJD93_10765 PF01694 Rhomboid family GJD93_10775 PF00005 ABC transporter GJD93_10780 PF13472 GDSL-like Lipase/Acylhydrolase family GJD93_10785 PF00484 Carbonic anhydrase GJD93_10790 PF00561 alpha/beta hydrolase fold GJD93_10800 PF01521 Iron-sulphur cluster biosynthesis GJD93_10800 PF01106 NifU-like domain GJD93_10820 PF01384 Phosphate transporter family GJD93_10825 PF02607 B12 binding domain GJD93_10825 PF02310 B12 binding domain GJD93_10825 PF02965 Vitamin B12 dependent methionine synthase, activation domain GJD93_10825 PF00809 Pterin binding enzyme GJD93_10825 PF02574 Homocysteine S-methyltransferase GJD93_10840 PF01272 Transcription elongation factor, GreA/GreB, C-term GJD93_10840 PF03449 Transcription elongation factor, N-terminal GJD93_10845 PF00497 Bacterial extracellular solute-binding proteins, family 3 GJD93_10845 PF01464 Transglycosylase SLT domain GJD93_10855 PF01171 PP-loop family GJD93_10865 PF01551 Peptidase family M23 GJD93_10865 PF10145 Phage-related minor tail protein GJD93_10865 PF01464 Transglycosylase SLT domain GJD93_10870 PF01435 Peptidase family M48 GJD93_10880 PF01769 Divalent cation transporter GJD93_10880 PF03448 MgtE intracellular N domain GJD93_10880 PF00571 CBS domain GJD93_10885 PF00873 AcrB/AcrD/AcrF family GJD93_10900 PF00118 TCP-1/cpn60 chaperonin family GJD93_10905 PF00166 Chaperonin 10 Kd subunit GJD93_10915 PF00781 Diacylglycerol kinase catalytic domain GJD93_10920 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain GJD93_10920 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain GJD93_10935 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GJD93_10935 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GJD93_10955 PF16655 PhoD-like phosphatase, N-terminal domain GJD93_10955 PF09423 PhoD-like phosphatase GJD93_10975 PF00809 Pterin binding enzyme GJD93_10980 PF06480 FtsH Extracellular GJD93_10980 PF17862 AAA+ lid domain GJD93_10980 PF00004 ATPase family associated with various cellular activities (AAA) GJD93_10980 PF01434 Peptidase family M41 GJD93_10985 PF01728 FtsJ-like methyltransferase GJD93_10990 PF01985 CRS1 / YhbY (CRM) domain GJD93_11005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GJD93_11005 PF00117 Glutamine amidotransferase class-I GJD93_11010 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GJD93_11010 PF02142 MGS-like domain GJD93_11010 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GJD93_11015 PF03449 Transcription elongation factor, N-terminal GJD93_11015 PF01272 Transcription elongation factor, GreA/GreB, C-term GJD93_11025 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_11030 PF00582 Universal stress protein family GJD93_11035 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GJD93_11040 PF04228 Putative neutral zinc metallopeptidase GJD93_11045 PF05661 Protein of unknown function (DUF808) GJD93_11050 PF00579 tRNA synthetases class I (W and Y) GJD93_11055 PF02629 CoA binding domain GJD93_11055 PF00549 CoA-ligase GJD93_11060 PF00549 CoA-ligase GJD93_11060 PF08442 ATP-grasp domain GJD93_11065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GJD93_11065 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_11070 PF02817 e3 binding domain GJD93_11070 PF00364 Biotin-requiring enzyme GJD93_11070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GJD93_11075 PF02779 Transketolase, pyrimidine binding domain GJD93_11075 PF16078 2-oxoglutarate dehydrogenase N-terminus GJD93_11075 PF16870 2-oxoglutarate dehydrogenase C-terminal GJD93_11075 PF00676 Dehydrogenase E1 component GJD93_11080 PF13085 2Fe-2S iron-sulfur cluster binding domain GJD93_11085 PF02910 Fumarate reductase flavoprotein C-term GJD93_11085 PF00890 FAD binding domain GJD93_11090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GJD93_11095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GJD93_11100 PF00285 Citrate synthase, C-terminal domain GJD93_11110 PF02540 NAD synthase GJD93_11110 PF00795 Carbon-nitrogen hydrolase GJD93_11135 PF00037 4Fe-4S binding domain GJD93_11140 PF01467 Cytidylyltransferase-like GJD93_11145 PF01668 SmpB protein GJD93_11150 PF03358 NADPH-dependent FMN reductase GJD93_11160 PF00849 RNA pseudouridylate synthase GJD93_11160 PF01479 S4 domain GJD93_11165 PF13525 Outer membrane lipoprotein GJD93_11170 PF08275 DNA primase catalytic core, N-terminal domain GJD93_11170 PF10410 DnaB-helicase binding domain of primase GJD93_11170 PF08278 DNA primase DnaG DnaB-binding GJD93_11170 PF01807 CHC2 zinc finger GJD93_11175 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GJD93_11175 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GJD93_11175 PF01488 Shikimate / quinate 5-dehydrogenase GJD93_11185 PF03550 Outer membrane lipoprotein LolB GJD93_11190 PF00288 GHMP kinases N terminal domain GJD93_11190 PF08544 GHMP kinases C terminal GJD93_11200 PF14572 Phosphoribosyl synthetase-associated domain GJD93_11200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GJD93_11205 PF01386 Ribosomal L25p family GJD93_11210 PF01195 Peptidyl-tRNA hydrolase GJD93_11215 PF02261 Aspartate decarboxylase GJD93_11235 PF09335 SNARE associated Golgi protein GJD93_11260 PF04539 Sigma-70 region 3 GJD93_11260 PF04545 Sigma-70, region 4 GJD93_11260 PF03979 Sigma-70 factor, region 1.1 GJD93_11260 PF04542 Sigma-70 region 2 GJD93_11260 PF00140 Sigma-70 factor, region 1.2 GJD93_11260 PF04546 Sigma-70, non-essential region GJD93_11265 PF04359 Protein of unknown function (DUF493) GJD93_11270 PF03099 Biotin/lipoate A/B protein ligase family GJD93_11280 PF00465 Iron-containing alcohol dehydrogenase GJD93_11285 PF13520 Amino acid permease GJD93_11290 PF00588 SpoU rRNA Methylase family GJD93_11295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GJD93_11295 PF10414 Sirohaem synthase dimerisation region GJD93_11295 PF14824 Sirohaem biosynthesis protein central GJD93_11300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GJD93_11300 PF02403 Seryl-tRNA synthetase N-terminal domain GJD93_11310 PF03548 Outer membrane lipoprotein carrier protein LolA GJD93_11315 PF01016 Ribosomal L27 protein GJD93_11320 PF00829 Ribosomal prokaryotic L21 protein GJD93_11325 PF00348 Polyprenyl synthetase GJD93_11335 PF01569 PAP2 superfamily GJD93_11340 PF00529 HlyD membrane-fusion protein of T1SS GJD93_11340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJD93_11345 PF00873 AcrB/AcrD/AcrF family GJD93_11350 PF02321 Outer membrane efflux protein GJD93_11355 PF01906 Putative heavy-metal-binding GJD93_11360 PF01906 Putative heavy-metal-binding GJD93_11370 PF00872 Transposase, Mutator family GJD93_11385 PF08264 Anticodon-binding domain of tRNA GJD93_11385 PF00133 tRNA synthetases class I (I, L, M and V) GJD93_11385 PF10458 Valyl tRNA synthetase tRNA binding arm GJD93_11400 PF04239 Protein of unknown function (DUF421) GJD93_11415 PF01734 Patatin-like phospholipase GJD93_11425 PF01145 SPFH domain / Band 7 family GJD93_11430 PF00474 Sodium:solute symporter family GJD93_11435 PF00672 HAMP domain GJD93_11435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_11435 PF00512 His Kinase A (phospho-acceptor) domain GJD93_11440 PF00072 Response regulator receiver domain GJD93_11440 PF00486 Transcriptional regulatory protein, C terminal GJD93_11445 PF02867 Ribonucleotide reductase, barrel domain GJD93_11445 PF03477 ATP cone domain GJD93_11445 PF00317 Ribonucleotide reductase, all-alpha domain GJD93_11450 PF00268 Ribonucleotide reductase, small chain GJD93_11460 PF01476 LysM domain GJD93_11460 PF04972 BON domain GJD93_11465 PF00550 Phosphopantetheine attachment site GJD93_11475 PF00698 Acyl transferase domain GJD93_11480 PF01783 Ribosomal L32p protein family GJD93_11485 PF02620 Large ribosomal RNA subunit accumulation protein YceD GJD93_11490 PF04315 Elongation factor P hydroxylase GJD93_11495 PF01300 Telomere recombination GJD93_11505 PF02616 Segregation and condensation protein ScpA GJD93_11510 PF04079 Segregation and condensation complex subunit ScpB GJD93_11515 PF00849 RNA pseudouridylate synthase GJD93_11515 PF01479 S4 domain GJD93_11530 PF00155 Aminotransferase class I and II GJD93_11535 PF04055 Radical SAM superfamily GJD93_11535 PF00202 Aminotransferase class-III GJD93_11535 PF06968 Biotin and Thiamin Synthesis associated domain GJD93_11540 PF08241 Methyltransferase domain GJD93_11540 PF12697 Alpha/beta hydrolase family GJD93_11545 PF00210 Ferritin-like domain GJD93_11550 PF16363 GDP-mannose 4,6 dehydratase GJD93_11555 PF03120 NAD-dependent DNA ligase OB-fold domain GJD93_11555 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GJD93_11555 PF12826 Helix-hairpin-helix motif GJD93_11555 PF01653 NAD-dependent DNA ligase adenylation domain GJD93_11555 PF00533 BRCA1 C Terminus (BRCT) domain GJD93_11560 PF04354 ZipA, C-terminal FtsZ-binding domain GJD93_11565 PF02463 RecF/RecN/SMC N terminal domain GJD93_11565 PF06470 SMC proteins Flexible Hinge Domain GJD93_11575 PF01925 Sulfite exporter TauE/SafE GJD93_11585 PF03309 Type III pantothenate kinase GJD93_11590 PF02978 Signal peptide binding domain GJD93_11590 PF02881 SRP54-type protein, helical bundle domain GJD93_11590 PF00448 SRP54-type protein, GTPase domain GJD93_11600 PF01207 Dihydrouridine synthase (Dus) GJD93_11605 PF06674 Protein of unknown function (DUF1176) GJD93_11610 PF07411 Domain of unknown function (DUF1508) GJD93_11615 PF08274 PhnA Zinc-Ribbon GJD93_11615 PF03831 PhnA domain GJD93_11620 PF04343 Protein of unknown function, DUF488 GJD93_11635 PF00849 RNA pseudouridylate synthase GJD93_11660 PF01850 PIN domain GJD93_11665 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GJD93_11670 PF00330 Aconitase family (aconitate hydratase) GJD93_11670 PF00694 Aconitase C-terminal domain GJD93_11695 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GJD93_11700 PF06827 Zinc finger found in FPG and IleRS GJD93_11700 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GJD93_11700 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GJD93_11710 PF01741 Large-conductance mechanosensitive channel, MscL GJD93_11720 PF00860 Permease family GJD93_11725 PF08468 Methyltransferase small domain N-terminal GJD93_11725 PF05175 Methyltransferase small domain GJD93_11730 PF00324 Amino acid permease GJD93_11735 PF00691 OmpA family GJD93_11735 PF13505 Outer membrane protein beta-barrel domain GJD93_11745 PF00108 Thiolase, N-terminal domain GJD93_11745 PF02803 Thiolase, C-terminal domain GJD93_11750 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain GJD93_11750 PF01113 Dihydrodipicolinate reductase, N-terminus GJD93_11760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GJD93_11760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GJD93_11765 PF02515 CoA-transferase family III GJD93_11770 PF12833 Helix-turn-helix domain GJD93_11770 PF02311 AraC-like ligand binding domain GJD93_11775 PF02803 Thiolase, C-terminal domain GJD93_11775 PF00108 Thiolase, N-terminal domain GJD93_11780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GJD93_11780 PF00378 Enoyl-CoA hydratase/isomerase GJD93_11780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GJD93_11790 PF13673 Acetyltransferase (GNAT) domain GJD93_11800 PF03006 Haemolysin-III related GJD93_11805 PF07690 Major Facilitator Superfamily GJD93_11805 PF00083 Sugar (and other) transporter GJD93_11810 PF00149 Calcineurin-like phosphoesterase GJD93_11810 PF10518 TAT (twin-arginine translocation) pathway signal sequence GJD93_11815 PF13091 PLD-like domain GJD93_11825 PF16360 GTP-binding GTPase Middle Region GJD93_11825 PF01926 50S ribosome-binding GTPase GJD93_11825 PF13167 GTP-binding GTPase N-terminal GJD93_11855 PF00149 Calcineurin-like phosphoesterase GJD93_11860 PF00398 Ribosomal RNA adenine dimethylase GJD93_11865 PF04166 Pyridoxal phosphate biosynthetic protein PdxA GJD93_11875 PF00572 Ribosomal protein L13 GJD93_11880 PF00380 Ribosomal protein S9/S16 GJD93_11885 PF00043 Glutathione S-transferase, C-terminal domain GJD93_11885 PF02798 Glutathione S-transferase, N-terminal domain GJD93_11890 PF04386 Stringent starvation protein B GJD93_11930 PF00563 EAL domain GJD93_11930 PF03707 Bacterial signalling protein N terminal repeat GJD93_11930 PF00990 Diguanylate cyclase, GGDEF domain GJD93_11935 PF00691 OmpA family GJD93_11960 PF02445 Quinolinate synthetase A protein GJD93_11965 PF01960 ArgJ family GJD93_11975 PF02810 SEC-C motif GJD93_11975 PF07517 SecA DEAD-like domain GJD93_11975 PF01043 SecA preprotein cross-linking domain GJD93_11975 PF07516 SecA Wing and Scaffold domain GJD93_11980 PF10417 C-terminal domain of 1-Cys peroxiredoxin GJD93_11980 PF00578 AhpC/TSA family GJD93_11990 PF08245 Mur ligase middle domain GJD93_11990 PF02875 Mur ligase family, glutamate ligase domain GJD93_11995 PF01039 Carboxyl transferase domain GJD93_12000 PF00290 Tryptophan synthase alpha chain GJD93_12005 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term GJD93_12005 PF12833 Helix-turn-helix domain GJD93_12015 PF00929 Exonuclease GJD93_12020 PF03193 RsgA GTPase GJD93_12030 PF00462 Glutaredoxin GJD93_12035 PF02556 Preprotein translocase subunit SecB GJD93_12040 PF02441 Flavoprotein GJD93_12040 PF04127 DNA / pantothenate metabolism flavoprotein GJD93_12045 PF04002 RadC-like JAB domain GJD93_12050 PF01062 Bestrophin, RFP-TM, chloride channel GJD93_12060 PF04279 Intracellular septation protein A GJD93_12065 PF03795 YCII-related domain GJD93_12075 PF01266 FAD dependent oxidoreductase GJD93_12075 PF05430 S-adenosyl-L-methionine-dependent methyltransferase GJD93_12085 PF04461 Protein of unknown function (DUF520) GJD93_12095 PF03061 Thioesterase superfamily GJD93_12100 PF00085 Thioredoxin GJD93_12110 PF04273 Putative phosphatase (DUF442) GJD93_12110 PF00753 Metallo-beta-lactamase superfamily GJD93_12125 PF00403 Heavy-metal-associated domain GJD93_12125 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_12125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GJD93_12160 PF01066 CDP-alcohol phosphatidyltransferase GJD93_12165 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ GJD93_12190 PF04143 Sulphur transport GJD93_12195 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GJD93_12195 PF00056 lactate/malate dehydrogenase, NAD binding domain GJD93_12205 PF01551 Peptidase family M23 GJD93_12205 PF01464 Transglycosylase SLT domain GJD93_12205 PF10145 Phage-related minor tail protein GJD93_12210 PF00919 Uncharacterized protein family UPF0004 GJD93_12210 PF04055 Radical SAM superfamily GJD93_12210 PF01938 TRAM domain GJD93_12215 PF02562 PhoH-like protein GJD93_12220 PF02130 Uncharacterized protein family UPF0054 GJD93_12255 PF03358 NADPH-dependent FMN reductase GJD93_12260 PF03631 Virulence factor BrkB GJD93_12275 PF01618 MotA/TolQ/ExbB proton channel family GJD93_12285 PF01842 ACT domain GJD93_12285 PF00551 Formyl transferase GJD93_12290 PF00440 Bacterial regulatory proteins, tetR family GJD93_12290 PF08360 QacR-like protein, C-terminal region GJD93_12295 PF00171 Aldehyde dehydrogenase family GJD93_12300 PF00830 Ribosomal L28 family GJD93_12305 PF00471 Ribosomal protein L33 GJD93_12310 PF00999 Sodium/hydrogen exchanger family GJD93_12310 PF02254 TrkA-N domain GJD93_12325 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) GJD93_12330 PF13361 UvrD-like helicase C-terminal domain GJD93_12330 PF00580 UvrD/REP helicase N-terminal domain GJD93_12345 PF01396 Topoisomerase DNA binding C4 zinc finger GJD93_12345 PF01131 DNA topoisomerase GJD93_12345 PF08272 Topoisomerase I zinc-ribbon-like GJD93_12345 PF01751 Toprim domain GJD93_12360 PF04102 SlyX GJD93_12370 PF03279 Bacterial lipid A biosynthesis acyltransferase GJD93_12385 PF01118 Semialdehyde dehydrogenase, NAD binding domain GJD93_12385 PF02774 Semialdehyde dehydrogenase, dimerisation domain GJD93_12400 PF17763 Glutaminase/Asparaginase C-terminal domain GJD93_12400 PF00710 Asparaginase, N-terminal GJD93_12405 PF01416 tRNA pseudouridine synthase GJD93_12415 PF01176 Translation initiation factor 1A / IF-1 GJD93_12425 PF00180 Isocitrate/isopropylmalate dehydrogenase GJD93_12435 PF00694 Aconitase C-terminal domain GJD93_12440 PF00330 Aconitase family (aconitate hydratase) GJD93_12455 PF03466 LysR substrate binding domain GJD93_12455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_12470 PF00293 NUDIX domain GJD93_12475 PF01590 GAF domain GJD93_12475 PF05524 PEP-utilising enzyme, N-terminal GJD93_12475 PF00391 PEP-utilising enzyme, mobile domain GJD93_12475 PF02896 PEP-utilising enzyme, TIM barrel domain GJD93_12490 PF18158 Adaptive response protein AidB N-terminal domain GJD93_12490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GJD93_12490 PF02770 Acyl-CoA dehydrogenase, middle domain GJD93_12500 PF00199 Catalase GJD93_12500 PF06628 Catalase-related immune-responsive GJD93_12515 PF14759 Reductase C-terminal GJD93_12515 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_12520 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase GJD93_12525 PF00106 short chain dehydrogenase GJD93_12530 PF00355 Rieske [2Fe-2S] domain GJD93_12535 PF00866 Ring hydroxylating beta subunit GJD93_12540 PF00848 Ring hydroxylating alpha subunit (catalytic domain) GJD93_12540 PF00355 Rieske [2Fe-2S] domain GJD93_12545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GJD93_12545 PF03466 LysR substrate binding domain GJD93_12555 PF00561 alpha/beta hydrolase fold GJD93_12560 PF03573 outer membrane porin, OprD family GJD93_12565 PF00682 HMGL-like GJD93_12565 PF07836 DmpG-like communication domain GJD93_12570 PF01118 Semialdehyde dehydrogenase, NAD binding domain GJD93_12570 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation GJD93_12575 PF01557 Fumarylacetoacetate (FAA) hydrolase family GJD93_12580 PF13419 Haloacid dehalogenase-like hydrolase GJD93_12585 PF00849 RNA pseudouridylate synthase GJD93_12585 PF01479 S4 domain GJD93_12590 PF12111 Polyribonucleotide phosphorylase C terminal GJD93_12590 PF00575 S1 RNA binding domain GJD93_12590 PF10150 Ribonuclease E/G family GJD93_12595 PF00501 AMP-binding enzyme GJD93_12595 PF13193 AMP-binding enzyme C-terminal domain GJD93_12620 PF04024 PspC domain GJD93_12625 PF00571 CBS domain GJD93_12630 PF02091 Glycyl-tRNA synthetase alpha subunit GJD93_12635 PF05746 DALR anticodon binding domain GJD93_12635 PF02092 Glycyl-tRNA synthetase beta subunit GJD93_12665 PF08241 Methyltransferase domain GJD93_12675 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GJD93_12675 PF07992 Pyridine nucleotide-disulphide oxidoreductase GJD93_12685 PF03884 DNA gyrase inhibitor YacG GJD93_12690 PF00753 Metallo-beta-lactamase superfamily GJD93_12695 PF00762 Ferrochelatase GJD93_12705 PF01177 Asp/Glu/Hydantoin racemase GJD93_12735 PF01206 Sulfurtransferase TusA GJD93_12740 PF03471 Transporter associated domain GJD93_12740 PF00571 CBS domain GJD93_12745 PF00795 Carbon-nitrogen hydrolase GJD93_12750 PF08334 Type II secretion system (T2SS), protein G GJD93_12750 PF07963 Prokaryotic N-terminal methylation motif GJD93_12755 PF00482 Type II secretion system (T2SS), protein F GJD93_12760 PF18074 Primosomal protein N C-terminal domain GJD93_12760 PF00270 DEAD/DEAH box helicase GJD93_12760 PF17764 3′ DNA-binding domain (3′BD) GJD93_12760 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GJD93_12760 PF00271 Helicase conserved C-terminal domain GJD93_12765 PF02254 TrkA-N domain GJD93_12765 PF00999 Sodium/hydrogen exchanger family GJD93_12770 PF01430 Hsp33 protein GJD93_12800 PF01138 3' exoribonuclease family, domain 1 GJD93_12800 PF03725 3' exoribonuclease family, domain 2 GJD93_12800 PF00575 S1 RNA binding domain GJD93_12800 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GJD93_12800 PF00013 KH domain GJD93_12805 PF00312 Ribosomal protein S15 GJD93_12810 PF13538 UvrD-like helicase C-terminal domain GJD93_12815 PF13361 UvrD-like helicase C-terminal domain GJD93_12815 PF12705 PD-(D/E)XK nuclease superfamily GJD93_12815 PF00580 UvrD/REP helicase N-terminal domain GJD93_12820 PF17946 RecC C-terminal domain GJD93_12830 PF03976 Polyphosphate kinase 2 (PPK2) GJD93_12840 PF01209 ubiE/COQ5 methyltransferase family GJD93_12850 PF03109 ABC1 family GJD93_12860 PF01502 Phosphoribosyl-AMP cyclohydrolase GJD93_12875 PF00361 Proton-conducting membrane transporter GJD93_12875 PF13244 Domain of unknown function (DUF4040) GJD93_12875 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GJD93_12875 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter GJD93_12880 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GJD93_12885 PF00361 Proton-conducting membrane transporter GJD93_12895 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) GJD93_12905 PF02033 Ribosome-binding factor A GJD93_12910 PF08364 Bacterial translation initiation factor IF-2 associated region GJD93_12910 PF04760 Translation initiation factor IF-2, N-terminal region GJD93_12910 PF00009 Elongation factor Tu GTP binding domain GJD93_12910 PF11987 Translation-initiation factor 2 GJD93_12915 PF08529 NusA N-terminal domain GJD93_12915 PF00575 S1 RNA binding domain GJD93_12915 PF13184 NusA-like KH domain GJD93_12920 PF17384 RimP C-terminal SH3 domain GJD93_12920 PF02576 RimP N-terminal domain GJD93_12945 PF03840 Preprotein translocase SecG subunit GJD93_12950 PF00121 Triosephosphate isomerase GJD93_12955 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GJD93_12955 PF00437 Type II/IV secretion system protein GJD93_12960 PF00482 Type II secretion system (T2SS), protein F GJD93_12965 PF01478 Type IV leader peptidase family GJD93_12965 PF06750 Bacterial Peptidase A24 N-terminal domain GJD93_12970 PF01121 Dephospho-CoA kinase GJD93_12980 PF00588 SpoU rRNA Methylase family GJD93_12980 PF08032 RNA 2'-O ribose methyltransferase substrate binding GJD93_12985 PF06865 Pyrimidine/purine nucleoside phosphorylase GJD93_12990 PF02463 RecF/RecN/SMC N terminal domain GJD93_13015 PF02622 Uncharacterized ACR, COG1678 GJD93_13020 PF03652 Holliday junction resolvase GJD93_13035 PF00664 ABC transporter transmembrane region GJD93_13035 PF00005 ABC transporter GJD93_13040 PF01066 CDP-alcohol phosphatidyltransferase GJD93_13050 PF01541 GIY-YIG catalytic domain GJD93_13050 PF02151 UvrB/uvrC motif GJD93_13050 PF08459 UvrC Helix-hairpin-helix N-terminal GJD93_13055 PF07724 AAA domain (Cdc48 subfamily) GJD93_13055 PF10431 C-terminal, D2-small domain, of ClpB protein GJD93_13070 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GJD93_13070 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GJD93_13070 PF00378 Enoyl-CoA hydratase/isomerase GJD93_13075 PF02803 Thiolase, C-terminal domain GJD93_13075 PF00108 Thiolase, N-terminal domain GJD93_13090 PF01323 DSBA-like thioredoxin domain GJD93_13115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_13115 PF00183 Hsp90 protein GJD93_13130 PF13726 Na+-H+ antiporter family GJD93_13130 PF03553 Na+/H+ antiporter family GJD93_13135 PF00561 alpha/beta hydrolase fold GJD93_13160 PF05000 RNA polymerase Rpb1, domain 4 GJD93_13160 PF04983 RNA polymerase Rpb1, domain 3 GJD93_13160 PF00623 RNA polymerase Rpb1, domain 2 GJD93_13160 PF04997 RNA polymerase Rpb1, domain 1 GJD93_13160 PF04998 RNA polymerase Rpb1, domain 5 GJD93_13165 PF00562 RNA polymerase Rpb2, domain 6 GJD93_13165 PF10385 RNA polymerase beta subunit external 1 domain GJD93_13165 PF04563 RNA polymerase beta subunit GJD93_13165 PF04561 RNA polymerase Rpb2, domain 2 GJD93_13165 PF04565 RNA polymerase Rpb2, domain 3 GJD93_13165 PF04560 RNA polymerase Rpb2, domain 7 GJD93_13170 PF00542 Ribosomal protein L7/L12 C-terminal domain GJD93_13170 PF16320 Ribosomal protein L7/L12 dimerisation domain GJD93_13175 PF00466 Ribosomal protein L10 GJD93_13180 PF00687 Ribosomal protein L1p/L10e family GJD93_13185 PF03946 Ribosomal protein L11, N-terminal domain GJD93_13185 PF00298 Ribosomal protein L11, RNA binding domain GJD93_13190 PF00467 KOW motif GJD93_13190 PF02357 Transcription termination factor nusG GJD93_13195 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GJD93_13205 PF00009 Elongation factor Tu GTP binding domain GJD93_13205 PF03144 Elongation factor Tu domain 2 GJD93_13205 PF03143 Elongation factor Tu C-terminal domain GJD93_13230 PF04715 Anthranilate synthase component I, N terminal region GJD93_13230 PF00425 chorismate binding enzyme GJD93_13235 PF13419 Haloacid dehalogenase-like hydrolase GJD93_13240 PF16697 Inner membrane component of T3SS, cytoplasmic domain GJD93_13245 PF03958 Bacterial type II/III secretion system short domain GJD93_13245 PF00263 Bacterial type II and III secretion system protein GJD93_13260 PF00816 H-NS histone family GJD93_13265 PF03061 Thioesterase superfamily GJD93_13285 PF03900 Porphobilinogen deaminase, C-terminal domain GJD93_13285 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GJD93_13290 PF00072 Response regulator receiver domain GJD93_13290 PF04397 LytTr DNA-binding domain GJD93_13295 PF07694 5TMR of 5TMR-LYT GJD93_13295 PF06580 Histidine kinase GJD93_13295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_13300 PF14698 Argininosuccinate lyase C-terminal GJD93_13300 PF00206 Lyase GJD93_13305 PF04362 Bacterial Fe(2+) trafficking GJD93_13310 PF01895 PhoU domain GJD93_13315 PF02321 Outer membrane efflux protein GJD93_13325 PF01964 Radical SAM ThiC family GJD93_13325 PF13667 ThiC-associated domain GJD93_13330 PF00293 NUDIX domain GJD93_13335 PF00149 Calcineurin-like phosphoesterase GJD93_13340 PF01258 Prokaryotic dksA/traR C4-type zinc finger GJD93_13345 PF00749 tRNA synthetases class I (E and Q), catalytic domain GJD93_13355 PF01098 Cell cycle protein GJD93_13360 PF08245 Mur ligase middle domain GJD93_13360 PF02875 Mur ligase family, glutamate ligase domain GJD93_13370 PF07664 Ferrous iron transport protein B C terminus GJD93_13370 PF02421 Ferrous iron transport protein B GJD93_13370 PF07670 Nucleoside recognition GJD93_13380 PF00589 Phage integrase family GJD93_13380 PF02899 Phage integrase, N-terminal SAM-like domain GJD93_13385 PF13098 Thioredoxin-like domain GJD93_13385 PF10411 Disulfide bond isomerase protein N-terminus GJD93_13390 PF01842 ACT domain GJD93_13390 PF00742 Homoserine dehydrogenase GJD93_13390 PF03447 Homoserine dehydrogenase, NAD binding domain GJD93_13395 PF00291 Pyridoxal-phosphate dependent enzyme GJD93_13400 PF00768 D-alanyl-D-alanine carboxypeptidase GJD93_13405 PF00072 Response regulator receiver domain GJD93_13405 PF00196 Bacterial regulatory proteins, luxR family GJD93_13410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_13410 PF00512 His Kinase A (phospho-acceptor) domain GJD93_13415 PF02954 Bacterial regulatory protein, Fis family GJD93_13415 PF00158 Sigma-54 interaction domain GJD93_13415 PF00072 Response regulator receiver domain GJD93_13420 PF17820 PDZ domain GJD93_13420 PF01471 Putative peptidoglycan binding domain GJD93_13420 PF03572 Peptidase family S41 GJD93_13425 PF06415 BPG-independent PGAM N-terminus (iPGM_N) GJD93_13425 PF01676 Metalloenzyme superfamily GJD93_13430 PF03739 Lipopolysaccharide export system permease LptF/LptG GJD93_13435 PF03739 Lipopolysaccharide export system permease LptF/LptG GJD93_13440 PF02789 Cytosol aminopeptidase family, N-terminal domain GJD93_13440 PF00883 Cytosol aminopeptidase family, catalytic domain GJD93_13460 PF09335 SNARE associated Golgi protein GJD93_13465 PF00677 Lumazine binding domain GJD93_13475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GJD93_13475 PF01872 RibD C-terminal domain GJD93_13480 PF03477 ATP cone domain GJD93_13485 PF00909 Ammonium Transporter Family GJD93_13490 PF00543 Nitrogen regulatory protein P-II GJD93_13500 PF13335 Magnesium chelatase, subunit ChlI C-terminal GJD93_13500 PF01078 Magnesium chelatase, subunit ChlI GJD93_13510 PF03573 outer membrane porin, OprD family GJD93_13515 PF00719 Inorganic pyrophosphatase GJD93_13530 PF13193 AMP-binding enzyme C-terminal domain GJD93_13530 PF00501 AMP-binding enzyme GJD93_13535 PF00521 DNA gyrase/topoisomerase IV, subunit A GJD93_13535 PF03989 DNA gyrase C-terminal domain, beta-propeller GJD93_13545 PF07690 Major Facilitator Superfamily GJD93_13550 PF03458 UPF0126 domain GJD93_13555 PF02810 SEC-C motif GJD93_13560 PF03741 Integral membrane protein TerC family GJD93_13560 PF03471 Transporter associated domain GJD93_13570 PF03641 Possible lysine decarboxylase GJD93_13580 PF07690 Major Facilitator Superfamily GJD93_13585 PF01183 Glycosyl hydrolases family 25 GJD93_13595 PF11799 impB/mucB/samB family C-terminal domain GJD93_13595 PF11798 IMS family HHH motif GJD93_13595 PF00817 impB/mucB/samB family GJD93_13610 PF11842 Domain of unknown function (DUF3362) GJD93_13610 PF04055 Radical SAM superfamily GJD93_13610 PF08497 Radical SAM N-terminal GJD93_13615 PF07690 Major Facilitator Superfamily GJD93_13620 PF07690 Major Facilitator Superfamily GJD93_13660 PF01327 Polypeptide deformylase GJD93_13670 PF17782 DprA winged helix domain GJD93_13670 PF02481 DNA recombination-mediator protein A GJD93_13675 PF01300 Telomere recombination GJD93_13685 PF02371 Transposase IS116/IS110/IS902 family GJD93_13685 PF01548 Transposase GJD93_13700 PF00892 EamA-like transporter family GJD93_13705 PF00255 Glutathione peroxidase GJD93_13715 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GJD93_13720 PF02874 ATP synthase alpha/beta family, beta-barrel domain GJD93_13720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GJD93_13725 PF00231 ATP synthase GJD93_13730 PF00306 ATP synthase alpha/beta chain, C terminal domain GJD93_13730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GJD93_13730 PF02874 ATP synthase alpha/beta family, beta-barrel domain GJD93_13735 PF00213 ATP synthase delta (OSCP) subunit GJD93_13740 PF00430 ATP synthase B/B' CF(0) GJD93_13745 PF00137 ATP synthase subunit C GJD93_13750 PF00119 ATP synthase A chain GJD93_13770 PF00005 ABC transporter GJD93_13775 PF00950 ABC 3 transport family GJD93_13785 PF01810 LysE type translocator GJD93_13790 PF04261 Dyp-type peroxidase family GJD93_13800 PF00182 Chitinase class I GJD93_13805 PF04717 Type VI secretion system, phage-baseplate injector GJD93_13830 PF01593 Flavin containing amine oxidoreductase GJD93_13835 PF02678 Pirin GJD93_13835 PF05726 Pirin C-terminal cupin domain GJD93_13840 PF00578 AhpC/TSA family GJD93_13840 PF10417 C-terminal domain of 1-Cys peroxiredoxin GJD93_13845 PF00436 Single-strand binding protein family GJD93_13850 PF07690 Major Facilitator Superfamily GJD93_13860 PF08543 Phosphomethylpyrimidine kinase GJD93_13860 PF03070 TENA/THI-4/PQQC family GJD93_13860 PF02581 Thiamine monophosphate synthase GJD93_13865 PF17760 UvrA interaction domain GJD93_13865 PF17755 UvrA DNA-binding domain GJD93_13870 PF00990 Diguanylate cyclase, GGDEF domain GJD93_13870 PF00072 Response regulator receiver domain GJD93_13885 PF00474 Sodium:solute symporter family GJD93_13890 PF04341 Protein of unknown function, DUF485 GJD93_13895 PF00512 His Kinase A (phospho-acceptor) domain GJD93_13895 PF09456 RcsC Alpha-Beta-Loop (ABL) GJD93_13895 PF00072 Response regulator receiver domain GJD93_13895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GJD93_13905 PF00390 Malic enzyme, N-terminal domain GJD93_13905 PF03949 Malic enzyme, NAD binding domain GJD93_13915 PF00750 tRNA synthetases class I (R) GJD93_13915 PF03485 Arginyl tRNA synthetase N terminal domain GJD93_13915 PF05746 DALR anticodon binding domain GJD93_13935 PF05726 Pirin C-terminal cupin domain GJD93_13935 PF02678 Pirin GJD93_13940 PF00072 Response regulator receiver domain GJD93_13940 PF00990 Diguanylate cyclase, GGDEF domain GJD93_13945 PF00958 GMP synthase C terminal domain GJD93_13945 PF00117 Glutamine amidotransferase class-I GJD93_13945 PF02540 NAD synthase GJD93_13950 PF07681 DoxX GJD93_13955 PF09335 SNARE associated Golgi protein GJD93_13970 PF13614 AAA domain GJD93_13975 PF04247 Invasion gene expression up-regulator, SirB GJD93_13980 PF01722 BolA-like protein GJD93_14000 PF07804 HipA-like C-terminal domain GJD93_14000 PF13657 HipA N-terminal domain GJD93_14005 PF00271 Helicase conserved C-terminal domain GJD93_14005 PF12419 SNF2 Helicase protein GJD93_14005 PF00176 SNF2 family N-terminal domain GJD93_14015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GJD93_14015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GJD93_14015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GJD93_14015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GJD93_14020 PF16363 GDP-mannose 4,6 dehydratase GJD93_14025 PF00342 Phosphoglucose isomerase GJD93_14030 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GJD93_14030 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GJD93_14030 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GJD93_14035 PF00483 Nucleotidyl transferase GJD93_14040 PF02719 Polysaccharide biosynthesis protein GJD93_14045 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GJD93_14050 PF14602 Hexapeptide repeat of succinyl-transferase GJD93_14050 PF17836 PglD N-terminal domain GJD93_14050 PF00132 Bacterial transferase hexapeptide (six repeats) GJD93_14055 PF02397 Bacterial sugar transferase GJD93_14060 PF00534 Glycosyl transferases group 1 GJD93_14060 PF13477 Glycosyl transferase 4-like GJD93_14065 PF00534 Glycosyl transferases group 1 GJD93_14065 PF13439 Glycosyltransferase Family 4 GJD93_14075 PF13439 Glycosyltransferase Family 4 GJD93_14075 PF00534 Glycosyl transferases group 1 GJD93_14080 PF07922 Glycosyltransferase family 52 GJD93_14085 PF01943 Polysaccharide biosynthesis protein GJD93_14090 PF13472 GDSL-like Lipase/Acylhydrolase family GJD93_14090 PF02348 Cytidylyltransferase GJD93_14095 PF00483 Nucleotidyl transferase GJD93_14105 PF03102 NeuB family GJD93_14105 PF08666 SAF domain GJD93_14110 PF02350 UDP-N-acetylglucosamine 2-epimerase GJD93_14115 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GJD93_14120 PF02719 Polysaccharide biosynthesis protein GJD93_14125 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GJD93_14125 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GJD93_14125 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GJD93_14130 PF10531 SLBB domain GJD93_14130 PF02563 Polysaccharide biosynthesis/export protein GJD93_14135 PF02706 Chain length determinant protein GJD93_14135 PF13614 AAA domain GJD93_14135 PF13807 G-rich domain on putative tyrosine kinase GJD93_14140 PF14052 Capsule assembly protein Wzi GJD93_14150 PF05173 Dihydrodipicolinate reductase, C-terminus GJD93_14150 PF01113 Dihydrodipicolinate reductase, N-terminus GJD93_14160 PF01556 DnaJ C terminal domain GJD93_14160 PF00226 DnaJ domain GJD93_14160 PF00684 DnaJ central domain GJD93_14170 PF00873 AcrB/AcrD/AcrF family GJD93_14175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GJD93_14175 PF00529 HlyD membrane-fusion protein of T1SS GJD93_14180 PF00440 Bacterial regulatory proteins, tetR family GJD93_14185 PF00311 Phosphoenolpyruvate carboxylase GJD93_14190 PF00990 Diguanylate cyclase, GGDEF domain GJD93_14195 PF00860 Permease family GJD93_14215 PF00920 Dehydratase family GJD93_14220 PF00920 Dehydratase family GJD93_14225 PF00551 Formyl transferase GJD93_14225 PF02911 Formyl transferase, C-terminal domain GJD93_14230 PF01189 16S rRNA methyltransferase RsmB/F GJD93_14230 PF01029 NusB family GJD93_14240 PF00209 Sodium:neurotransmitter symporter family GJD93_14245 PF00171 Aldehyde dehydrogenase family GJD93_14280 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GJD93_14290 PF07859 alpha/beta hydrolase fold GJD93_14300 PF01025 GrpE GJD93_14305 PF00012 Hsp70 protein GJD93_14320 PF13406 Transglycosylase SLT domain GJD93_14325 PF02222 ATP-grasp domain GJD93_14325 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GJD93_14330 PF00731 AIR carboxylase GJD93_14340 PF08245 Mur ligase middle domain GJD93_14340 PF02875 Mur ligase family, glutamate ligase domain GJD93_14340 PF01225 Mur ligase family, catalytic domain GJD93_14345 PF08240 Alcohol dehydrogenase GroES-like domain GJD93_14345 PF00107 Zinc-binding dehydrogenase GJD93_14355 PF03741 Integral membrane protein TerC family GJD93_14360 PF01979 Amidohydrolase family GJD93_14365 PF00156 Phosphoribosyl transferase domain GJD93_14375 PF10411 Disulfide bond isomerase protein N-terminus GJD93_14375 PF13098 Thioredoxin-like domain GJD93_14380 PF01545 Cation efflux family GJD93_14385 PF02583 Metal-sensitive transcriptional repressor GJD93_14400 PF10396 GTP-binding protein TrmE N-terminus GJD93_14400 PF12631 MnmE helical domain GJD93_14400 PF01926 50S ribosome-binding GTPase GJD93_14405 PF14849 YidC periplasmic domain GJD93_14405 PF02096 60Kd inner membrane protein GJD93_14410 PF01809 Putative membrane protein insertion efficiency factor GJD93_14415 PF00825 Ribonuclease P GJD93_14420 PF00468 Ribosomal protein L34