locus-tag	class	description
GJD93_00005	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
GJD93_00025	COG1192	Involved in chromosome partitioning
GJD93_00050	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
GJD93_00100	COG3077	Addiction module antitoxin, RelB DinJ family
GJD93_00115	COG2132	Multicopper oxidase
GJD93_00165	COG2826	transposase and inactivated derivatives, IS30 family
GJD93_00180	COG3316	Transposase and inactivated derivatives
GJD93_00185	COG1660	Displays ATPase and GTPase activities
GJD93_00205	COG1570	exodeoxyribonuclease VII activity
GJD93_00220	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
GJD93_00225	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
GJD93_00230	COG0732	type I restriction modification DNA specificity domain
GJD93_00245	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJD93_00255	COG3173	Aminoglycoside phosphotransferase
GJD93_00275	COG1683	Conserved Protein
GJD93_00315	COG1230	cation diffusion facilitator family transporter
GJD93_00330	COG0582	viral genome integration into host DNA
GJD93_00375	COG3210	domain, Protein
GJD93_00380	COG2831	hemolysin activation secretion protein
GJD93_00395	COG1373	ATPase (AAA superfamily
GJD93_00415	COG4372	Transposase
GJD93_00480	COG3012	SEC-C Motif Domain Protein
GJD93_00505	COG2194	sulfuric ester hydrolase activity
GJD93_00510	COG0642	Histidine kinase
GJD93_00515	COG0745	RESPONSE REGULATOR receiver
GJD93_00570	COG1192	Involved in chromosome partitioning
GJD93_00585	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
GJD93_00600	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
GJD93_00635	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GJD93_00645	COG1570	exodeoxyribonuclease VII activity
GJD93_00690	COG3173	Aminoglycoside phosphotransferase
GJD93_00720	COG0488	(ABC) transporter
GJD93_00755	COG0745	RESPONSE REGULATOR receiver
GJD93_00760	COG5002	protein histidine kinase activity
GJD93_00770	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GJD93_00790	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
GJD93_00795	COG3657	addiction module killer protein
GJD93_00805	COG0659	secondary active sulfate transmembrane transporter activity
GJD93_00810	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
GJD93_00815	COG3657	addiction module killer protein
GJD93_00890	COG3316	Transposase and inactivated derivatives
GJD93_00905	COG3316	Transposase and inactivated derivatives
GJD93_00925	COG3316	Transposase and inactivated derivatives
GJD93_00965	COG0592	DNA-directed DNA polymerase activity
GJD93_00975	COG0187	DNA topoisomerase II activity
GJD93_00985	COG0488	(ABC) transporter
GJD93_01000	COG0316	Belongs to the HesB IscA family
GJD93_01005	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
GJD93_01010	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
GJD93_01040	COG2814	Major facilitator Superfamily
GJD93_01045	COG2133	pyrroloquinoline quinone binding
GJD93_01050	COG1047	Peptidyl-prolyl cis-trans
GJD93_01055	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
GJD93_01060	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
GJD93_01065	COG0196	riboflavin kinase activity
GJD93_01075	COG1309	transcriptional regulator
GJD93_01080	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
GJD93_01080	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
GJD93_01100	COG1028	Short-chain dehydrogenase reductase Sdr
GJD93_01105	COG0546	phosphoglycolate phosphatase activity
GJD93_01110	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GJD93_01125	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
GJD93_01140	COG3023	N-Acetylmuramoyl-L-alanine amidase
GJD93_01160	COG1064	alcohol dehydrogenase
GJD93_01165	COG2818	Glycosylase
GJD93_01180	COG1194	a g-specific adenine glycosylase
GJD93_01195	COG5487	UPF0391 membrane protein
GJD93_01200	COG2983	Belongs to the UPF0260 family
GJD93_01205	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
GJD93_01215	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GJD93_01225	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
GJD93_01230	COG2814	Major facilitator Superfamily
GJD93_01240	COG1335	isochorismatase
GJD93_01255	COG3830	Belongs to the UPF0237 family
GJD93_01255	COG0560	Phosphoserine phosphatase
GJD93_01310	COG0534	Mate efflux family protein
GJD93_01315	COG0436	Aminotransferase
GJD93_01320	COG2733	membrane
GJD93_01335	COG2918	glutathione biosynthetic process
GJD93_01350	COG3150	esterase
GJD93_01365	COG0471	metal ion transport
GJD93_01405	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
GJD93_01420	COG1393	Belongs to the ArsC family
GJD93_01425	COG0708	Exodeoxyribonuclease III
GJD93_01430	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
GJD93_01455	COG0189	ligase activity
GJD93_01475	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
GJD93_01485	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
GJD93_01490	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
GJD93_01515	COG2119	membrane
GJD93_01520	COG0426	domain, Protein
GJD93_01520	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
GJD93_01545	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
GJD93_01570	COG1902	pentaerythritol trinitrate reductase activity
GJD93_01575	COG1519	Transferase
GJD93_01585	COG0668	transmembrane transport
GJD93_01590	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
GJD93_01630	COG3316	Transposase and inactivated derivatives
GJD93_01645	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
GJD93_01655	COG2814	Major facilitator Superfamily
GJD93_01660	COG0583	DNA-binding transcription factor activity
GJD93_01700	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
GJD93_01710	COG3316	Transposase and inactivated derivatives
GJD93_01720	COG3316	Transposase and inactivated derivatives
GJD93_01770	COG3316	Transposase and inactivated derivatives
GJD93_01785	COG4221	oxidoreductase activity
GJD93_01790	COG4372	Transposase
GJD93_01840	COG3316	Transposase and inactivated derivatives
GJD93_01895	COG3173	Aminoglycoside phosphotransferase
GJD93_01905	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJD93_01945	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
GJD93_01990	COG3077	Addiction module antitoxin, RelB DinJ family
GJD93_01995	COG1764	response to oxidative stress
GJD93_02000	COG1846	Transcriptional regulator
GJD93_02015	COG2801	Transposase and inactivated derivatives
GJD93_02030	COG3077	Addiction module antitoxin, RelB DinJ family
GJD93_02055	COG1570	exodeoxyribonuclease VII activity
GJD93_02070	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
GJD93_02145	COG0556	nucleotide-excision repair
GJD93_02150	COG1104	cysteine desulfurase activity
GJD93_02160	COG3756	Protein conserved in bacteria
GJD93_02190	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GJD93_02200	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
GJD93_02205	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
GJD93_02210	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
GJD93_02240	COG3158	transport of potassium into the cell
GJD93_02260	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
GJD93_02280	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
GJD93_02295	COG0697	spore germination
GJD93_02315	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
GJD93_02335	COG3547	Transposase (IS116 IS110 IS902 family)
GJD93_02370	COG0427	acetyl-CoA hydrolase
GJD93_02375	COG2205	protein histidine kinase activity
GJD93_02380	COG0745	RESPONSE REGULATOR receiver
GJD93_02400	COG4221	oxidoreductase activity
GJD93_02410	COG0488	(ABC) transporter
GJD93_02430	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GJD93_02440	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
GJD93_02445	COG0275	rRNA processing
GJD93_02460	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
GJD93_02465	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
GJD93_02470	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
GJD93_02475	COG2226	methyltransferase
GJD93_02525	COG0070	glutamate synthase
GJD93_02525	COG0069	glutamate synthase activity
GJD93_02525	COG0067	glutamate synthase
GJD93_02530	COG0493	'glutamate synthase
GJD93_02535	COG1704	LemA family
GJD93_02540	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
GJD93_02565	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
GJD93_02585	COG3307	-O-antigen
GJD93_02595	COG2906	2 iron, 2 sulfur cluster binding
GJD93_02605	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GJD93_02610	COG1758	RNA polymerase activity
GJD93_02615	COG0194	GDP metabolic process
GJD93_02660	COG0228	four-way junction DNA binding
GJD93_02665	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
GJD93_02675	COG0335	large ribosomal subunit rRNA binding
GJD93_02685	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
GJD93_02690	COG5380	lipid catabolic process
GJD93_02695	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
GJD93_02710	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
GJD93_02715	COG0277	FAD linked oxidase domain protein
GJD93_02740	COG2814	Major facilitator Superfamily
GJD93_02745	COG2032	superoxide dismutase activity
GJD93_02750	COG0628	permease
GJD93_02755	COG1192	Involved in chromosome partitioning
GJD93_02765	COG2226	methyltransferase
GJD93_02780	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
GJD93_02785	COG0254	rRNA binding
GJD93_02800	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
GJD93_02805	COG0534	Mate efflux family protein
GJD93_02815	COG0635	Involved in the biosynthesis of porphyrin-containing compound
GJD93_02845	COG1960	acyl-CoA dehydrogenase activity
GJD93_02870	COG0635	Involved in the biosynthesis of porphyrin-containing compound
GJD93_02890	COG0513	Belongs to the DEAD box helicase family
GJD93_02895	COG1127	ABC transporter
GJD93_02900	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
GJD93_02905	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
GJD93_02910	COG2854	intermembrane phospholipid transfer
GJD93_02920	COG0598	Magnesium transport protein CorA
GJD93_02935	COG1040	competence protein
GJD93_02940	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
GJD93_02950	COG2937	Belongs to the GPAT DAPAT family
GJD93_02955	COG1946	Acyl-CoA thioesterase
GJD93_02960	COG1301	dicarboxylic acid transport
GJD93_02975	COG1959	2 iron, 2 sulfur cluster binding
GJD93_02980	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GJD93_02980	COG1017	nitric oxide dioxygenase activity
GJD93_02985	COG0433	COG0433 Predicted ATPase
GJD93_03010	COG0088	Forms part of the polypeptide exit tunnel
GJD93_03025	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
GJD93_03065	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
GJD93_03075	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
GJD93_03080	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
GJD93_03090	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
GJD93_03110	COG0257	Belongs to the bacterial ribosomal protein bL36 family
GJD93_03115	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
GJD93_03120	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
GJD93_03125	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
GJD93_03135	COG0203	ribosomal protein L17
GJD93_03140	COG2072	flavoprotein involved in K transport
GJD93_03145	COG1960	acyl-CoA dehydrogenase activity
GJD93_03150	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
GJD93_03185	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
GJD93_03190	COG0339	signal peptide processing
GJD93_03200	COG0557	exoribonuclease II activity
GJD93_03230	COG0179	Fumarylacetoacetate (FAA) hydrolase
GJD93_03255	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
GJD93_03310	COG2813	Specifically methylates the guanine in position
GJD93_03310	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GJD93_03315	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GJD93_03320	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GJD93_03330	COG3128	pkhd-type hydroxylase
GJD93_03335	COG4774	siderophore transport
GJD93_03340	COG4771	TonB-dependent receptor
GJD93_03350	COG0740	serine-type endopeptidase activity
GJD93_03365	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
GJD93_03365	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
GJD93_03370	COG2890	protein-(glutamine-N5) methyltransferase activity
GJD93_03375	COG0857	belongs to the CobB CobQ family
GJD93_03375	COG0280	phosphate acetyltransferase
GJD93_03380	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
GJD93_03425	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
GJD93_03440	COG0084	hydrolase, TatD family'
GJD93_03445	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
GJD93_03450	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
GJD93_03460	COG2814	Major facilitator Superfamily
GJD93_03470	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
GJD93_03475	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
GJD93_03480	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
GJD93_03490	COG3622	Belongs to the hyi family
GJD93_03495	COG2084	Dehydrogenase
GJD93_03500	COG1024	Enoyl-CoA hydratase
GJD93_03505	COG2205	protein histidine kinase activity
GJD93_03505	COG0784	Response regulator, receiver
GJD93_03505	COG5002	protein histidine kinase activity
GJD93_03525	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GJD93_03545	COG1862	Preprotein translocase
GJD93_03565	COG5001	Diguanylate cyclase
GJD93_03565	COG4251	negative regulation of phosphorylation
GJD93_03565	COG2203	Gaf domain
GJD93_03565	COG3706	GGDEF domain
GJD93_03570	COG1704	LemA family
GJD93_03580	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
GJD93_03595	COG0784	Response regulator, receiver
GJD93_03595	COG5002	protein histidine kinase activity
GJD93_03595	COG2205	protein histidine kinase activity
GJD93_03600	COG1538	Outer membrane efflux protein
GJD93_03605	COG1136	(ABC) transporter
GJD93_03605	COG0577	efflux transmembrane transporter activity
GJD93_03610	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GJD93_03615	COG2703	oxygen carrier activity
GJD93_03640	COG0028	Belongs to the TPP enzyme family
GJD93_03670	COG0726	polysaccharide deacetylase
GJD93_03675	COG0297	glycogen (starch) synthase activity
GJD93_03725	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
GJD93_03740	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GJD93_03760	COG1960	acyl-CoA dehydrogenase activity
GJD93_03765	COG1960	acyl-CoA dehydrogenase activity
GJD93_03775	COG2205	protein histidine kinase activity
GJD93_03780	COG0745	RESPONSE REGULATOR receiver
GJD93_03785	COG0675	Transposase, IS605 OrfB family
GJD93_03790	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
GJD93_03805	COG2096	Adenosyltransferase
GJD93_03810	COG4206	TonB-dependent receptor
GJD93_03820	COG0133	tryptophan synthase activity
GJD93_03840	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
GJD93_03880	COG2975	iron-sulfur cluster assembly
GJD93_03900	COG1426	Protein conserved in bacteria
GJD93_03920	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
GJD93_03935	COG3956	TIGRFAM MazG family protein
GJD93_03940	COG1555	photosystem II stabilization
GJD93_03940	COG1596	polysaccharide export
GJD93_03945	COG0617	tRNA 3'-terminal CCA addition
GJD93_03950	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
GJD93_03965	COG1660	Displays ATPase and GTPase activities
GJD93_03975	COG3028	Belongs to the UPF0307 family
GJD93_03980	COG0318	PFAM AMP-dependent synthetase and ligase
GJD93_04010	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
GJD93_04015	COG0625	glutathione transferase activity
GJD93_04025	COG1238	metal cluster binding
GJD93_04040	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
GJD93_04070	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
GJD93_04075	COG0072	phenylalanine-tRNA ligase activity
GJD93_04100	COG0248	Ppx GppA phosphatase
GJD93_04110	COG0037	tRNA processing
GJD93_04150	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
GJD93_04215	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
GJD93_04220	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
GJD93_04270	COG0494	nUDIX hydrolase
GJD93_04280	COG1214	PFAM Peptidase M22, glycoprotease
GJD93_04285	COG1968	undecaprenyl-diphosphatase activity
GJD93_04305	COG4269	membrane
GJD93_04320	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
GJD93_04330	COG2132	Multicopper oxidase
GJD93_04345	COG2076	Multidrug Resistance protein
GJD93_04350	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
GJD93_04360	COG0351	phosphomethylpyrimidine kinase
GJD93_04360	COG0352	thiamine-phosphate diphosphorylase activity
GJD93_04415	COG0456	acetyltransferase
GJD93_04425	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
GJD93_04430	COG0492	ferredoxin-NADP+ reductase activity
GJD93_04435	COG1674	ftsk spoiiie
GJD93_04435	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
GJD93_04450	COG2894	cell division
GJD93_04465	COG0204	Acyl-transferase
GJD93_04470	COG2885	chlorophyll binding
GJD93_04475	COG0210	DNA helicase
GJD93_04480	COG0756	dUTP diphosphatase activity
GJD93_04485	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJD93_04490	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
GJD93_04500	COG0121	glutamine amidotransferase
GJD93_04515	COG2914	Belongs to the UPF0125 (RnfH) family
GJD93_04520	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
GJD93_04525	COG0735	belongs to the Fur family
GJD93_04555	COG0420	3'-5' exonuclease activity
GJD93_04565	COG1090	epimerase
GJD93_04570	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GJD93_04580	COG2050	protein possibly involved in aromatic compounds catabolism
GJD93_04590	COG1022	Amp-dependent synthetase and ligase
GJD93_04600	COG0300	oxidoreductase activity
GJD93_04605	COG3604	Transcriptional regulator
GJD93_04615	COG0730	response to heat
GJD93_04625	COG4185	zeta toxin
GJD93_04635	COG0577	efflux transmembrane transporter activity
GJD93_04635	COG1136	(ABC) transporter
GJD93_04660	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
GJD93_04675	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
GJD93_04690	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GJD93_04700	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GJD93_04705	COG1077	Cell shape determining protein MreB Mrl
GJD93_04710	COG1792	Involved in formation and maintenance of cell shape
GJD93_04715	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
GJD93_04720	COG0424	maF-like protein
GJD93_04725	COG1530	ribonuclease E activity
GJD93_04730	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
GJD93_04740	COG0560	Phosphoserine phosphatase
GJD93_04760	COG1840	ABC-type Fe3 transport system, periplasmic component
GJD93_04765	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
GJD93_04770	COG1113	amino acid transport
GJD93_04775	COG2828	Protein conserved in bacteria
GJD93_04780	COG0142	geranyltranstransferase activity
GJD93_04790	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GJD93_04800	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GJD93_04800	COG0649	NAD binding
GJD93_04810	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
GJD93_04825	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GJD93_04835	COG0713	ATP synthesis coupled electron transport
GJD93_04840	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
GJD93_04845	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GJD93_04860	COG1278	Cold shock
GJD93_04865	COG1278	Cold shock
GJD93_04870	COG0583	DNA-binding transcription factor activity
GJD93_04895	COG0668	transmembrane transport
GJD93_04905	COG2081	HI0933 family
GJD93_04910	COG2515	1-aminocyclopropane-1-carboxylate deaminase
GJD93_04920	COG4716	Myosin-crossreactive antigen
GJD93_04945	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GJD93_04945	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GJD93_04950	COG0489	protein tyrosine kinase activity
GJD93_04990	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GJD93_05015	COG0840	transmembrane signaling receptor activity
GJD93_05020	COG0643	Histidine kinase
GJD93_05020	COG2198	Histidine kinase
GJD93_05030	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
GJD93_05035	COG5510	response to toxic substance
GJD93_05045	COG2832	Protein of unknown function (DUF454)
GJD93_05115	COG1289	transmembrane transporter activity
GJD93_05120	COG2814	Major facilitator Superfamily
GJD93_05130	COG0786	glutamate:sodium symporter activity
GJD93_05135	COG2059	Chromate
GJD93_05140	COG1752	Esterase of the alpha-beta hydrolase superfamily
GJD93_05145	COG1607	acyl-coa hydrolase
GJD93_05155	COG0523	cobalamin synthesis protein
GJD93_05160	COG4681	YaeQ
GJD93_05170	COG2199	diguanylate cyclase activity
GJD93_05170	COG2203	Gaf domain
GJD93_05175	COG3118	belongs to the thioredoxin family
GJD93_05205	COG1192	Involved in chromosome partitioning
GJD93_05235	COG3328	transposase activity
GJD93_05250	COG1253	flavin adenine dinucleotide binding
GJD93_05270	COG0204	Acyl-transferase
GJD93_05280	COG0742	ribosomal rna small subunit methyltransferase
GJD93_05285	COG0768	penicillin binding
GJD93_05310	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
GJD93_05315	COG2878	Part of a membrane complex involved in electron transport
GJD93_05320	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
GJD93_05330	COG3384	dioxygenase
GJD93_05340	COG2234	aminopeptidase activity
GJD93_05350	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
GJD93_05370	COG2186	Transcriptional regulator
GJD93_05380	COG0277	FAD linked oxidase domain protein
GJD93_05395	COG3706	GGDEF domain
GJD93_05415	COG0642	Histidine kinase
GJD93_05420	COG0745	RESPONSE REGULATOR receiver
GJD93_05425	COG2194	sulfuric ester hydrolase activity
GJD93_05435	COG0789	Transcriptional regulator
GJD93_05455	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
GJD93_05460	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
GJD93_05465	COG4680	protein conserved in bacteria
GJD93_05490	COG3079	Belongs to the UPF0149 family
GJD93_05495	COG0006	proline dipeptidase activity
GJD93_05505	COG3077	Addiction module antitoxin, RelB DinJ family
GJD93_05510	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GJD93_05515	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GJD93_05545	COG2816	NAD+ diphosphatase activity
GJD93_05555	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GJD93_05560	COG1388	LysM domain
GJD93_05560	COG0741	lytic transglycosylase activity
GJD93_05560	COG1388	LysM domain
GJD93_05560	COG0741	lytic transglycosylase activity
GJD93_05565	COG4166	transmembrane transport
GJD93_05570	COG4174	ABC transporter (Permease)
GJD93_05575	COG4239	(ABC) transporter, permease
GJD93_05580	COG4172	Belongs to the ABC transporter superfamily
GJD93_05595	COG0833	amino acid
GJD93_05605	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GJD93_05610	COG0418	dihydroorotase activity
GJD93_05615	COG2203	Gaf domain
GJD93_05615	COG3706	GGDEF domain
GJD93_05615	COG4251	negative regulation of phosphorylation
GJD93_05615	COG5001	Diguanylate cyclase
GJD93_05625	COG0446	pyridine nucleotide-disulphide oxidoreductase
GJD93_05625	COG1902	pentaerythritol trinitrate reductase activity
GJD93_05715	COG2885	chlorophyll binding
GJD93_05720	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
GJD93_05720	COG0047	phosphoribosylformylglycinamidine synthase activity
GJD93_05730	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
GJD93_05740	COG0281	malic enzyme
GJD93_05740	COG0280	phosphate acetyltransferase
GJD93_05750	COG1385	rRNA (uridine-N3-)-methyltransferase activity
GJD93_05755	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
GJD93_05760	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
GJD93_05770	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
GJD93_05785	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
GJD93_05790	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GJD93_05795	COG2175	clavaminate synthase activity
GJD93_05810	COG0024	Methionine aminopeptidase
GJD93_05815	COG0052	Belongs to the universal ribosomal protein uS2 family
GJD93_05840	COG2951	lytic endotransglycosylase activity
GJD93_05855	COG0842	Transport permease protein
GJD93_05860	COG1131	(ABC) transporter
GJD93_05950	COG0305	Participates in initiation and elongation during chromosome replication
GJD93_06005	COG3728	DNA packaging
GJD93_06110	COG0582	viral genome integration into host DNA
GJD93_06115	COG0582	viral genome integration into host DNA
GJD93_06155	COG2184	nucleotidyltransferase activity
GJD93_06210	COG1454	alcohol dehydrogenase
GJD93_06235	COG1028	Short-chain dehydrogenase reductase Sdr
GJD93_06245	COG1028	Short-chain dehydrogenase reductase Sdr
GJD93_06250	COG3177	Filamentation induced by cAMP protein fic
GJD93_06290	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GJD93_06300	COG3547	Transposase (IS116 IS110 IS902 family)
GJD93_06325	COG3634	alkyl hydroperoxide reductase activity
GJD93_06330	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
GJD93_06345	COG0640	Transcriptional regulator
GJD93_06350	COG0798	PFAM Bile acid sodium symporter
GJD93_06355	COG0431	NADPH-dependent FMN reductase
GJD93_06360	COG0789	Transcriptional regulator
GJD93_06385	COG1720	tRNA m6t6A37 methyltransferase activity
GJD93_06400	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
GJD93_06410	COG0745	RESPONSE REGULATOR receiver
GJD93_06415	COG0642	Histidine kinase
GJD93_06425	COG0352	thiamine-phosphate diphosphorylase activity
GJD93_06435	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
GJD93_06440	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
GJD93_06445	COG3139	Protein of unknown function (DUF1315)
GJD93_06455	COG1960	acyl-CoA dehydrogenase activity
GJD93_06465	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
GJD93_06470	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
GJD93_06490	COG0415	Belongs to the DNA photolyase family
GJD93_06495	COG1047	Peptidyl-prolyl cis-trans
GJD93_06500	COG1686	Belongs to the peptidase S11 family
GJD93_06600	COG0305	Participates in initiation and elongation during chromosome replication
GJD93_06665	COG1783	phage Terminase large subunit
GJD93_06670	COG3567	Phage-associated protein, HI1409 family
GJD93_06675	COG2369	cell adhesion
GJD93_06680	COG3566	protein conserved in bacteria
GJD93_06805	COG0582	viral genome integration into host DNA
GJD93_06810	COG2026	Addiction module toxin, RelE StbE family
GJD93_06825	COG0612	Peptidase, M16
GJD93_06860	COG0352	thiamine-phosphate diphosphorylase activity
GJD93_06895	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GJD93_06895	COG1017	nitric oxide dioxygenase activity
GJD93_06955	COG0450	alkyl hydroperoxide reductase
GJD93_06960	COG1643	Atp-dependent helicase
GJD93_06980	COG0517	IMP dehydrogenase activity
GJD93_06980	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
GJD93_06985	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
GJD93_06995	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
GJD93_07000	COG1137	ATPase activity
GJD93_07020	COG4122	O-methyltransferase activity
GJD93_07030	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
GJD93_07055	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GJD93_07095	COG2011	ABC-type metal ion transport system permease component
GJD93_07100	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
GJD93_07105	COG1464	Belongs to the NlpA lipoprotein family
GJD93_07120	COG0138	bifunctional purine biosynthesis protein purh
GJD93_07125	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
GJD93_07170	COG0183	Belongs to the thiolase family
GJD93_07175	COG3243	poly(R)-hydroxyalkanoic acid synthase
GJD93_07190	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
GJD93_07200	COG0305	Participates in initiation and elongation during chromosome replication
GJD93_07210	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
GJD93_07215	COG0360	Binds together with S18 to 16S ribosomal RNA
GJD93_07225	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GJD93_07230	COG1845	cytochrome c oxidase, subunit III
GJD93_07235	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
GJD93_07240	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
GJD93_07265	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
GJD93_07280	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
GJD93_07290	COG3781	membrane
GJD93_07310	COG1960	acyl-CoA dehydrogenase activity
GJD93_07315	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
GJD93_07325	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
GJD93_07335	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
GJD93_07350	COG0477	Major facilitator Superfamily
GJD93_07355	COG0729	surface antigen
GJD93_07390	COG0308	aminopeptidase N
GJD93_07400	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GJD93_07410	COG0589	response to stress
GJD93_07415	COG0589	response to stress
GJD93_07425	COG3135	benzoate transporter
GJD93_07435	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
GJD93_07450	COG0183	Belongs to the thiolase family
GJD93_07470	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
GJD93_07475	COG0824	Thioesterase
GJD93_07480	COG1454	alcohol dehydrogenase
GJD93_07485	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
GJD93_07505	COG2197	response regulator
GJD93_07510	COG4585	Histidine kinase
GJD93_07515	COG2850	peptidyl-arginine hydroxylation
GJD93_07520	COG0424	maF-like protein
GJD93_07530	COG0126	phosphoglycerate kinase activity
GJD93_07555	COG0778	Nitroreductase
GJD93_07565	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJD93_07575	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GJD93_07600	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GJD93_07605	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
GJD93_07610	COG1960	acyl-CoA dehydrogenase activity
GJD93_07615	COG2267	carboxylic ester hydrolase activity
GJD93_07625	COG1902	pentaerythritol trinitrate reductase activity
GJD93_07625	COG0446	pyridine nucleotide-disulphide oxidoreductase
GJD93_07655	COG0148	phosphopyruvate hydratase activity
GJD93_07660	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
GJD93_07670	COG0772	Belongs to the SEDS family
GJD93_07695	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
GJD93_07700	COG0730	response to heat
GJD93_07705	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJD93_07710	COG2207	Transcriptional regulator
GJD93_07715	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GJD93_07730	COG1960	acyl-CoA dehydrogenase activity
GJD93_07735	COG1960	acyl-CoA dehydrogenase activity
GJD93_07770	COG4890	Cyd operon protein YbgT
GJD93_07775	COG1294	oxidase, subunit
GJD93_07790	COG1585	Membrane protein implicated in regulation of membrane protease activity
GJD93_07800	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
GJD93_07820	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
GJD93_07825	COG0569	domain protein
GJD93_07835	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
GJD93_07855	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
GJD93_07860	COG0542	response to heat
GJD93_07890	COG0372	Belongs to the citrate synthase family
GJD93_07905	COG1058	Belongs to the CinA family
GJD93_07905	COG1546	Belongs to the CinA family
GJD93_07945	COG2814	Major facilitator Superfamily
GJD93_07955	COG3706	GGDEF domain
GJD93_07965	COG0668	transmembrane transport
GJD93_07970	COG3122	Protein conserved in bacteria
GJD93_07975	COG3619	membrane
GJD93_07990	COG0640	Transcriptional regulator
GJD93_07995	COG2937	Belongs to the GPAT DAPAT family
GJD93_08000	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
GJD93_08010	COG0183	Belongs to the thiolase family
GJD93_08015	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GJD93_08020	COG0183	Belongs to the thiolase family
GJD93_08025	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
GJD93_08030	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
GJD93_08035	COG3135	benzoate transporter
GJD93_08040	COG1028	Short-chain dehydrogenase reductase Sdr
GJD93_08045	COG0633	Ferredoxin
GJD93_08045	COG0543	2 iron, 2 sulfur cluster binding
GJD93_08050	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
GJD93_08055	COG4638	Rieske (2fe-2S)
GJD93_08065	COG4829	muconolactone delta-isomerase
GJD93_08070	COG4948	Mandelate Racemase Muconate Lactonizing
GJD93_08075	COG0583	DNA-binding transcription factor activity
GJD93_08080	COG2814	Major facilitator Superfamily
GJD93_08090	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
GJD93_08135	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
GJD93_08165	COG1960	acyl-CoA dehydrogenase activity
GJD93_08200	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GJD93_08205	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
GJD93_08210	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
GJD93_08220	COG2814	Major facilitator Superfamily
GJD93_08225	COG0509	glycine decarboxylation via glycine cleavage system
GJD93_08235	COG1132	(ABC) transporter
GJD93_08245	COG2801	Transposase and inactivated derivatives
GJD93_08260	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
GJD93_08275	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GJD93_08280	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
GJD93_08290	COG1944	ATP diphosphatase activity
GJD93_08295	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
GJD93_08315	COG0642	Histidine kinase
GJD93_08320	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
GJD93_08325	COG0511	ligase activity, forming carbon-carbon bonds
GJD93_08335	COG0596	Alpha beta hydrolase
GJD93_08355	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
GJD93_08360	COG1283	sodium-dependent phosphate transmembrane transporter activity
GJD93_08410	COG0552	protein localization to endoplasmic reticulum
GJD93_08415	COG0612	Peptidase, M16
GJD93_08445	COG0517	IMP dehydrogenase activity
GJD93_08450	COG0133	tryptophan synthase activity
GJD93_08460	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GJD93_08480	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
GJD93_08510	COG0537	adenosine 5'-monophosphoramidase activity
GJD93_08535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJD93_08565	COG0822	iron-sulfur transferase activity
GJD93_08570	COG0316	Belongs to the HesB IscA family
GJD93_08600	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
GJD93_08615	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
GJD93_08620	COG0702	epimerase
GJD93_08625	COG0268	Binds directly to 16S ribosomal RNA
GJD93_08640	COG1218	3'(2'),5'-bisphosphate nucleotidase
GJD93_08655	COG1011	Hydrolase
GJD93_08660	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
GJD93_08670	COG2137	regulation of response to DNA damage stimulus
GJD93_08685	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJD93_08695	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GJD93_08705	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
GJD93_08720	COG0575	Belongs to the CDS family
GJD93_08725	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
GJD93_08745	COG3852	Histidine kinase
GJD93_08750	COG2204	response regulator
GJD93_08760	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GJD93_08765	COG0583	DNA-binding transcription factor activity
GJD93_08770	COG2963	transposase activity
GJD93_08780	COG4372	Transposase
GJD93_08785	COG0024	Methionine aminopeptidase
GJD93_08800	COG1114	Component of the transport system for branched-chain amino acids
GJD93_08820	COG1253	flavin adenine dinucleotide binding
GJD93_08840	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
GJD93_08845	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
GJD93_08860	COG2431	L-lysine efflux transmembrane transporter activity
GJD93_08895	COG0590	tRNA wobble adenosine to inosine editing
GJD93_08905	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
GJD93_08940	COG0084	hydrolase, TatD family'
GJD93_08960	COG1663	tetraacyldisaccharide 4'-kinase activity
GJD93_08965	COG1132	(ABC) transporter
GJD93_08975	COG0811	peptide transport
GJD93_08980	COG1475	DNA binding
GJD93_08985	COG1192	Involved in chromosome partitioning
GJD93_08995	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
GJD93_09010	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJD93_09015	COG1923	regulation of RNA biosynthetic process
GJD93_09025	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
GJD93_09030	COG0802	atpase or kinase
GJD93_09055	COG2707	UPF0756 membrane protein
GJD93_09060	COG2807	transmembrane transport
GJD93_09065	COG0583	DNA-binding transcription factor activity
GJD93_09070	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
GJD93_09075	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
GJD93_09085	COG1454	alcohol dehydrogenase
GJD93_09105	COG2353	YceI-like domain
GJD93_09120	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
GJD93_09125	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
GJD93_09165	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
GJD93_09165	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
GJD93_09195	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
GJD93_09310	COG0012	GTP binding
GJD93_09320	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
GJD93_09330	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
GJD93_09335	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
GJD93_09345	COG0386	Belongs to the glutathione peroxidase family
GJD93_09350	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GJD93_09355	COG0436	Aminotransferase
GJD93_09390	COG2815	serine threonine protein kinase
GJD93_09390	COG0515	serine threonine protein kinase
GJD93_09420	COG0828	Belongs to the bacterial ribosomal protein bS21 family
GJD93_09425	COG1610	YqeY-like protein
GJD93_09440	COG4783	chaperone-mediated protein folding
GJD93_09465	COG1286	toxin biosynthetic process
GJD93_09470	COG0167	dihydroorotate dehydrogenase activity
GJD93_09495	COG0778	Nitroreductase
GJD93_09505	COG0513	Belongs to the DEAD box helicase family
GJD93_09510	COG1278	Cold shock
GJD93_09525	COG2363	Small membrane protein
GJD93_09545	COG0659	secondary active sulfate transmembrane transporter activity
GJD93_09550	COG0220	tRNA (guanine-N7-)-methyltransferase activity
GJD93_09575	COG0318	PFAM AMP-dependent synthetase and ligase
GJD93_09580	COG1309	transcriptional regulator
GJD93_09585	COG1960	acyl-CoA dehydrogenase activity
GJD93_09590	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
GJD93_09595	COG1024	Enoyl-CoA hydratase
GJD93_09615	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
GJD93_09620	COG2885	chlorophyll binding
GJD93_09620	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
GJD93_09640	COG0540	Belongs to the ATCase OTCase family
GJD93_09665	COG1765	OsmC-like protein
GJD93_09675	COG0667	Aldo Keto reductase
GJD93_09690	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
GJD93_09705	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GJD93_09710	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
GJD93_09715	COG0527	aspartate kinase activity
GJD93_09725	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
GJD93_09740	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
GJD93_09745	COG2252	PERMEase
GJD93_09775	COG0714	Associated with various cellular activities
GJD93_09780	COG2879	small protein
GJD93_09785	COG1966	Carbon starvation protein
GJD93_09790	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
GJD93_09795	COG1509	lysine 2,3-aminomutase activity
GJD93_09830	COG1067	ATP-dependent peptidase activity
GJD93_09835	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
GJD93_09840	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
GJD93_09845	COG0583	DNA-binding transcription factor activity
GJD93_09870	COG1686	Belongs to the peptidase S11 family
GJD93_09875	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
GJD93_09905	COG2915	High frequency lysogenization protein hflD homolog
GJD93_09930	COG0616	signal peptide processing
GJD93_09940	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
GJD93_09950	COG0573	inorganic phosphate transmembrane transporter activity
GJD93_09960	COG0076	glutamate decarboxylase activity
GJD93_09965	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
GJD93_09975	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
GJD93_09990	COG2814	Major facilitator Superfamily
GJD93_09995	COG1733	regulation of RNA biosynthetic process
GJD93_10015	COG0556	nucleotide-excision repair
GJD93_10055	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
GJD93_10070	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
GJD93_10075	COG0571	ribonuclease III activity
GJD93_10100	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GJD93_10110	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
GJD93_10125	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
GJD93_10135	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
GJD93_10150	COG4208	sulfate ABC transporter
GJD93_10155	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
GJD93_10160	COG0583	DNA-binding transcription factor activity
GJD93_10170	COG4625	pathogenesis
GJD93_10185	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
GJD93_10195	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
GJD93_10200	COG1056	cytidyltransferase-related domain
GJD93_10200	COG1051	belongs to the nudix hydrolase family
GJD93_10205	COG1024	Enoyl-CoA hydratase
GJD93_10210	COG0778	Nitroreductase
GJD93_10225	COG0632	four-way junction helicase activity
GJD93_10230	COG2255	four-way junction helicase activity
GJD93_10240	COG0824	Thioesterase
GJD93_10260	COG0823	Involved in the tonB-independent uptake of proteins
GJD93_10285	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GJD93_10320	COG0628	permease
GJD93_10325	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
GJD93_10330	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
GJD93_10350	COG0658	competence protein
GJD93_10350	COG2333	competence protein COMEC
GJD93_10355	COG1136	(ABC) transporter
GJD93_10360	COG4591	ABC-type transport system involved in lipoprotein release permease component
GJD93_10375	COG1671	Belongs to the UPF0178 family
GJD93_10410	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GJD93_10465	COG0019	diaminopimelate decarboxylase activity
GJD93_10475	COG1115	amino acid carrier protein
GJD93_10490	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GJD93_10495	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
GJD93_10500	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
GJD93_10535	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
GJD93_10550	COG0512	Glutamine amidotransferase of anthranilate synthase
GJD93_10555	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
GJD93_10575	COG3706	GGDEF domain
GJD93_10590	COG3739	integral membrane protein
GJD93_10605	COG1741	Belongs to the pirin family
GJD93_10610	COG2072	flavoprotein involved in K transport
GJD93_10625	COG2871	sodium ion transport
GJD93_10695	COG0175	sulfate reduction
GJD93_10705	COG3549	Plasmid maintenance system killer
GJD93_10710	COG3093	addiction module antidote protein HigA
GJD93_10725	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
GJD93_10730	COG1773	rubredoxin
GJD93_10735	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GJD93_10740	COG2267	carboxylic ester hydrolase activity
GJD93_10745	COG0583	DNA-binding transcription factor activity
GJD93_10760	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
GJD93_10765	COG0457	Tetratricopeptide repeat
GJD93_10765	COG0705	Rhomboid family
GJD93_10770	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
GJD93_10775	COG4181	ATPase activity
GJD93_10820	COG0306	phosphate transporter
GJD93_10840	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GJD93_10865	COG0741	lytic transglycosylase activity
GJD93_10865	COG1196	nuclear chromosome segregation
GJD93_10865	COG0739	heme binding
GJD93_10870	COG0501	Belongs to the peptidase M48B family
GJD93_10880	COG2239	Acts as a magnesium transporter
GJD93_10900	COG0459	protein refolding
GJD93_10935	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
GJD93_10975	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
GJD93_10980	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GJD93_10985	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
GJD93_11005	COG0505	Belongs to the CarA family
GJD93_11030	COG0589	response to stress
GJD93_11035	COG3695	enzyme binding
GJD93_11040	COG2321	neutral zinc metallopeptidase
GJD93_11045	COG2354	Protein conserved in bacteria
GJD93_11065	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GJD93_11080	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
GJD93_11085	COG1053	succinate dehydrogenase
GJD93_11090	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
GJD93_11095	COG2009	succinate dehydrogenase
GJD93_11110	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
GJD93_11110	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
GJD93_11135	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
GJD93_11160	COG0564	pseudouridine synthase activity
GJD93_11170	COG0358	DNA primase activity
GJD93_11175	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
GJD93_11185	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
GJD93_11200	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
GJD93_11235	COG0586	Pfam SNARE associated Golgi protein
GJD93_11260	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
GJD93_11270	COG0321	lipoyl(octanoyl) transferase activity
GJD93_11285	COG0531	amino acid
GJD93_11290	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
GJD93_11295	COG1648	precorrin-2 dehydrogenase activity
GJD93_11295	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
GJD93_11300	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
GJD93_11310	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
GJD93_11335	COG0671	phosphoesterase, PA-phosphatase related
GJD93_11340	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GJD93_11350	COG1538	Outer membrane efflux protein
GJD93_11355	COG0393	Putative heavy-metal-binding
GJD93_11360	COG0393	Putative heavy-metal-binding
GJD93_11370	COG3328	transposase activity
GJD93_11375	COG1028	Short-chain dehydrogenase reductase Sdr
GJD93_11385	COG0525	valine-tRNA ligase activity
GJD93_11400	COG2323	membrane
GJD93_11415	COG1752	Esterase of the alpha-beta hydrolase superfamily
GJD93_11430	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
GJD93_11435	COG2205	protein histidine kinase activity
GJD93_11440	COG0745	RESPONSE REGULATOR receiver
GJD93_11450	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GJD93_11460	COG1652	LysM domain
GJD93_11470	COG1028	Short-chain dehydrogenase reductase Sdr
GJD93_11485	COG1399	metal-binding, possibly nucleic acid-binding protein
GJD93_11490	COG3101	peptidyl-lysine hydroxylation
GJD93_11495	COG0009	L-threonylcarbamoyladenylate synthase
GJD93_11505	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
GJD93_11510	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
GJD93_11525	COG4106	trans-aconitate 2-methyltransferase activity
GJD93_11540	COG2226	methyltransferase
GJD93_11540	COG0596	Alpha beta hydrolase
GJD93_11540	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GJD93_11545	COG2193	ferroxidase activity
GJD93_11550	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
GJD93_11555	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
GJD93_11560	COG3115	cell septum assembly
GJD93_11565	COG1196	nuclear chromosome segregation
GJD93_11575	COG0730	response to heat
GJD93_11590	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
GJD93_11605	COG5342	invasion associated locus B
GJD93_11610	COG3422	double-strand break repair
GJD93_11615	COG2824	Alkylphosphonate utilization operon protein PhnA
GJD93_11620	COG3189	MarR family transcriptional regulator
GJD93_11635	COG0564	pseudouridine synthase activity
GJD93_11665	COG4456	Virulence-associated protein
GJD93_11670	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
GJD93_11695	COG1902	pentaerythritol trinitrate reductase activity
GJD93_11705	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GJD93_11710	COG1970	mechanosensitive ion channel activity
GJD93_11720	COG2233	PERMEase
GJD93_11730	COG0833	amino acid
GJD93_11735	COG2885	chlorophyll binding
GJD93_11735	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
GJD93_11745	COG0183	Belongs to the thiolase family
GJD93_11760	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GJD93_11770	COG2207	Transcriptional regulator
GJD93_11775	COG0183	Belongs to the thiolase family
GJD93_11780	COG1024	Enoyl-CoA hydratase
GJD93_11780	COG1250	3-hydroxyacyl-CoA dehydrogenase
GJD93_11790	COG2153	protein acetylation
GJD93_11800	COG1272	protein, Hemolysin III
GJD93_11805	COG0477	Major facilitator Superfamily
GJD93_11810	COG1408	metallophosphoesterase
GJD93_11815	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GJD93_11825	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
GJD93_11855	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
GJD93_11860	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
GJD93_11875	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
GJD93_11880	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GJD93_11885	COG0625	glutathione transferase activity
GJD93_11890	COG2969	positive regulation of protein catabolic process
GJD93_11930	COG5001	Diguanylate cyclase
GJD93_11930	COG3300	MHYT domain
GJD93_11935	COG2885	chlorophyll binding
GJD93_11960	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
GJD93_11965	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
GJD93_11980	COG0450	alkyl hydroperoxide reductase
GJD93_11990	COG0285	dihydrofolate synthase activity
GJD93_11995	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
GJD93_12015	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
GJD93_12020	COG1162	GTPase activity
GJD93_12030	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
GJD93_12040	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
GJD93_12050	COG3781	membrane
GJD93_12065	COG2350	Protein conserved in bacteria
GJD93_12085	COG1666	GTP binding
GJD93_12095	COG1607	acyl-coa hydrolase
GJD93_12110	COG3453	Protein conserved in bacteria
GJD93_12110	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GJD93_12160	COG1183	phosphatidylcholine synthase activity
GJD93_12165	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
GJD93_12190	COG2391	methyltransferase activity
GJD93_12205	COG0741	lytic transglycosylase activity
GJD93_12205	COG0739	heme binding
GJD93_12205	COG1196	nuclear chromosome segregation
GJD93_12210	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GJD93_12215	COG1702	phosphate starvation-inducible protein PhoH
GJD93_12220	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
GJD93_12260	COG1295	ribonuclease BN
GJD93_12285	COG0788	formyltetrahydrofolate deformylase activity
GJD93_12300	COG0227	Belongs to the bacterial ribosomal protein bL28 family
GJD93_12305	COG0267	Belongs to the bacterial ribosomal protein bL33 family
GJD93_12310	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
GJD93_12310	COG4651	solute:proton antiporter activity
GJD93_12325	COG0724	RNA recognition motif
GJD93_12360	COG2900	Belongs to the SlyX family
GJD93_12370	COG1560	Kdo2-lipid A biosynthetic process
GJD93_12400	COG0252	asparaginase activity
GJD93_12405	COG0101	tRNA pseudouridine synthase activity
GJD93_12425	COG0473	3-isopropylmalate dehydrogenase activity
GJD93_12440	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
GJD93_12455	COG0583	DNA-binding transcription factor activity
GJD93_12490	COG1960	acyl-CoA dehydrogenase activity
GJD93_12500	COG0753	catalase activity
GJD93_12515	COG0446	pyridine nucleotide-disulphide oxidoreductase
GJD93_12520	COG3384	dioxygenase
GJD93_12525	COG1028	Short-chain dehydrogenase reductase Sdr
GJD93_12540	COG4638	Rieske (2fe-2S)
GJD93_12545	COG0583	DNA-binding transcription factor activity
GJD93_12570	COG4569	acetaldehyde dehydrogenase (acetylating) activity
GJD93_12575	COG3971	2-oxopent-4-enoate hydratase activity
GJD93_12580	COG0546	phosphoglycolate phosphatase activity
GJD93_12590	COG1530	ribonuclease E activity
GJD93_12595	COG0318	PFAM AMP-dependent synthetase and ligase
GJD93_12620	COG1983	PspC domain protein
GJD93_12625	COG0517	IMP dehydrogenase activity
GJD93_12635	COG0751	glycine-tRNA ligase activity
GJD93_12665	COG2226	methyltransferase
GJD93_12675	COG0493	'glutamate synthase
GJD93_12685	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
GJD93_12690	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GJD93_12705	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
GJD93_12715	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
GJD93_12715	COG0644	oxidoreductase
GJD93_12740	COG4535	Mg2 and Co2 transporter CorC
GJD93_12745	COG0815	Transfers the fatty acyl group on membrane lipoproteins
GJD93_12760	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
GJD93_12770	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
GJD93_12810	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
GJD93_12815	COG1074	ATP-dependent DNA helicase activity
GJD93_12820	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
GJD93_12850	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
GJD93_12875	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
GJD93_12875	COG2111	Na H antiporter
GJD93_12880	COG1006	Multisubunit Na H antiporter MnhC subunit
GJD93_12885	COG0651	ATP synthesis coupled electron transport
GJD93_12895	COG2212	antiporter activity
GJD93_12905	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
GJD93_12910	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
GJD93_12915	COG0195	Participates in both transcription termination and antitermination
GJD93_12920	COG0779	Required for maturation of 30S ribosomal subunits
GJD93_12970	COG0237	dephospho-CoA kinase activity
GJD93_12980	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GJD93_12985	COG3123	guanosine phosphorylase activity
GJD93_12990	COG0497	DNA recombination
GJD93_13020	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
GJD93_13035	COG1132	(ABC) transporter
GJD93_13040	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
GJD93_13050	COG0322	excinuclease ABC activity
GJD93_13070	COG1250	3-hydroxyacyl-CoA dehydrogenase
GJD93_13070	COG1024	Enoyl-CoA hydratase
GJD93_13090	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
GJD93_13115	COG0326	Molecular chaperone. Has ATPase activity
GJD93_13130	COG2056	Na+-H+ antiporter family
GJD93_13165	COG0085	RNA polymerase activity
GJD93_13180	COG0081	regulation of translation
GJD93_13265	COG0824	Thioesterase
GJD93_13285	COG0181	hydroxymethylbilane synthase activity
GJD93_13295	COG3275	phosphorelay sensor kinase activity
GJD93_13315	COG1538	Outer membrane efflux protein
GJD93_13330	COG0494	nUDIX hydrolase
GJD93_13335	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
GJD93_13340	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
GJD93_13345	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GJD93_13355	COG0772	Belongs to the SEDS family
GJD93_13380	COG4974	Belongs to the 'phage' integrase family
GJD93_13385	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
GJD93_13395	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
GJD93_13405	COG2197	response regulator
GJD93_13420	COG0793	Belongs to the peptidase S41A family
GJD93_13425	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
GJD93_13430	COG0795	lipopolysaccharide-transporting ATPase activity
GJD93_13435	COG0795	lipopolysaccharide-transporting ATPase activity
GJD93_13460	COG0586	Pfam SNARE associated Golgi protein
GJD93_13475	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GJD93_13475	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GJD93_13485	COG0004	ammonium transporteR
GJD93_13490	COG0347	Belongs to the P(II) protein family
GJD93_13500	COG0606	chelatase, subunit chli
GJD93_13515	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
GJD93_13530	COG0318	PFAM AMP-dependent synthetase and ligase
GJD93_13545	COG0477	Major facilitator Superfamily
GJD93_13550	COG2860	membrane
GJD93_13555	COG3012	SEC-C Motif Domain Protein
GJD93_13560	COG1253	flavin adenine dinucleotide binding
GJD93_13595	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GJD93_13615	COG2814	Major facilitator Superfamily
GJD93_13620	COG2814	Major facilitator Superfamily
GJD93_13670	COG0758	DNA mediated transformation
GJD93_13685	COG3547	Transposase (IS116 IS110 IS902 family)
GJD93_13700	COG0697	spore germination
GJD93_13705	COG0386	Belongs to the glutathione peroxidase family
GJD93_13720	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
GJD93_13730	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
GJD93_13770	COG1121	(ABC) transporter
GJD93_13775	COG1108	ABC-type Mn2 Zn2 transport systems permease components
GJD93_13790	COG2837	iron assimilation
GJD93_13800	COG3179	chitinase
GJD93_13805	COG3501	Rhs element vgr protein
GJD93_13840	COG0450	alkyl hydroperoxide reductase
GJD93_13850	COG2814	Major facilitator Superfamily
GJD93_13860	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
GJD93_13860	COG0351	phosphomethylpyrimidine kinase
GJD93_13860	COG0352	thiamine-phosphate diphosphorylase activity
GJD93_13870	COG0745	RESPONSE REGULATOR receiver
GJD93_13870	COG3706	GGDEF domain
GJD93_13885	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
GJD93_13890	COG3162	membrane
GJD93_13895	COG0784	Response regulator, receiver
GJD93_13895	COG2205	protein histidine kinase activity
GJD93_13905	COG0281	malic enzyme
GJD93_13940	COG3706	GGDEF domain
GJD93_13940	COG0745	RESPONSE REGULATOR receiver
GJD93_13945	COG0518	GMP synthase (glutamine-hydrolyzing) activity
GJD93_13945	COG0519	Catalyzes the synthesis of GMP from XMP
GJD93_13950	COG2259	Doxx family
GJD93_13955	COG0586	Pfam SNARE associated Golgi protein
GJD93_13970	COG1192	Involved in chromosome partitioning
GJD93_13975	COG3094	Invasion gene expression up-regulator, SirB
GJD93_13980	COG0271	Belongs to the BolA IbaG family
GJD93_14000	COG3550	peptidyl-serine autophosphorylation
GJD93_14005	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
GJD93_14015	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GJD93_14020	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
GJD93_14035	COG1210	Utp--glucose-1-phosphate uridylyltransferase
GJD93_14045	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
GJD93_14055	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
GJD93_14065	COG0438	transferase activity, transferring glycosyl groups
GJD93_14075	COG0438	transferase activity, transferring glycosyl groups
GJD93_14085	COG2244	polysaccharide biosynthetic process
GJD93_14095	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
GJD93_14105	COG2089	acid synthase
GJD93_14110	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
GJD93_14115	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
GJD93_14125	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
GJD93_14130	COG1596	polysaccharide export
GJD93_14150	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
GJD93_14180	COG1309	transcriptional regulator
GJD93_14190	COG3706	GGDEF domain
GJD93_14195	COG2233	PERMEase
GJD93_14215	COG0129	dihydroxy-acid dehydratase activity
GJD93_14220	COG0129	dihydroxy-acid dehydratase activity
GJD93_14230	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
GJD93_14240	COG0733	neurotransmitter:sodium symporter activity
GJD93_14245	COG1012	belongs to the aldehyde dehydrogenase family
GJD93_14280	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GJD93_14300	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
GJD93_14320	COG2951	lytic endotransglycosylase activity
GJD93_14325	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
GJD93_14340	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
GJD93_14345	COG1063	alcohol dehydrogenase
GJD93_14355	COG0861	Integral membrane protein TerC family
GJD93_14360	COG0402	S-adenosylhomocysteine deaminase activity
GJD93_14375	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
GJD93_14380	COG1230	cation diffusion facilitator family transporter
GJD93_14405	COG0706	membrane insertase activity
GJD93_14410	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
GJD93_14415	COG0594	ribonuclease P activity
GJD93_14420	COG0230	Belongs to the bacterial ribosomal protein bL34 family