locus-tag class description URS_0022 PF00145 C-5 cytosine-specific DNA methylase URS_0025 PF01381 Helix-turn-helix URS_0025 PF00717 Peptidase S24-like URS_0035 PF01527 Transposase URS_0036 PF00665 Integrase core domain URS_0036 PF13333 Integrase core domain URS_0036 PF13276 HTH-like domain URS_0037 PF13276 HTH-like domain URS_0037 PF00665 Integrase core domain URS_0037 PF13333 Integrase core domain URS_0038 PF01527 Transposase URS_0042 PF00561 alpha/beta hydrolase fold URS_0044 PF09278 MerR, DNA binding URS_0044 PF00376 MerR family regulatory protein URS_0045 PF03989 DNA gyrase C-terminal domain, beta-propeller URS_0045 PF00521 DNA gyrase/topoisomerase IV, subunit A URS_0046 PF00766 Electron transfer flavoprotein FAD-binding domain URS_0046 PF01012 Electron transfer flavoprotein domain URS_0047 PF01012 Electron transfer flavoprotein domain URS_0049 PF00589 Phage integrase family URS_0049 PF02899 Phage integrase, N-terminal SAM-like domain URS_0050 PF00561 alpha/beta hydrolase fold URS_0051 PF14581 SseB protein C-terminal domain URS_0051 PF07179 SseB protein N-terminal domain URS_0052 PF01678 Diaminopimelate epimerase URS_0053 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain URS_0053 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain URS_0055 PF00324 Amino acid permease URS_0056 PF18073 Rubredoxin metal binding domain URS_0058 PF00152 tRNA synthetases class II (D, K and N) URS_0059 PF11890 Domain of unknown function (DUF3410) URS_0059 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain URS_0059 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain URS_0060 PF04072 Leucine carboxyl methyltransferase URS_0061 PF00743 Flavin-binding monooxygenase-like URS_0062 PF00106 short chain dehydrogenase URS_0064 PF00440 Bacterial regulatory proteins, tetR family URS_0064 PF17932 Tetracyclin repressor-like, C-terminal domain URS_0066 PF07690 Major Facilitator Superfamily URS_0067 PF07690 Major Facilitator Superfamily URS_0068 PF00378 Enoyl-CoA hydratase/isomerase URS_0069 PF00171 Aldehyde dehydrogenase family URS_0072 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_0072 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_0072 PF02770 Acyl-CoA dehydrogenase, middle domain URS_0073 PF03573 outer membrane porin, OprD family URS_0075 PF00593 TonB dependent receptor URS_0075 PF07715 TonB-dependent Receptor Plug Domain URS_0076 PF00593 TonB dependent receptor URS_0076 PF07715 TonB-dependent Receptor Plug Domain URS_0078 PF08281 Sigma-70, region 4 URS_0078 PF04542 Sigma-70 region 2 URS_0079 PF01126 Heme oxygenase URS_0083 PF03466 LysR substrate binding domain URS_0083 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0084 PF01144 Coenzyme A transferase URS_0085 PF01144 Coenzyme A transferase URS_0086 PF02667 Short chain fatty acid transporter URS_0087 PF02803 Thiolase, C-terminal domain URS_0087 PF00108 Thiolase, N-terminal domain URS_0088 PF00005 ABC transporter URS_0088 PF03459 TOBE domain URS_0089 PF00528 Binding-protein-dependent transport system inner membrane component URS_0094 PF00083 Sugar (and other) transporter URS_0095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0095 PF03466 LysR substrate binding domain URS_0096 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_0096 PF02770 Acyl-CoA dehydrogenase, middle domain URS_0096 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_0097 PF03328 HpcH/HpaI aldolase/citrate lyase family URS_0099 PF02515 CoA-transferase family III URS_0100 PF16078 2-oxoglutarate dehydrogenase N-terminus URS_0100 PF16870 2-oxoglutarate dehydrogenase C-terminal URS_0100 PF02779 Transketolase, pyrimidine binding domain URS_0100 PF00676 Dehydrogenase E1 component URS_0103 PF12697 Alpha/beta hydrolase family URS_0104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0104 PF03466 LysR substrate binding domain URS_0106 PF02899 Phage integrase, N-terminal SAM-like domain URS_0106 PF00589 Phage integrase family URS_0110 PF13737 Transposase DDE domain URS_0113 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_0113 PF00724 NADH:flavin oxidoreductase / NADH oxidase family URS_0114 PF00892 EamA-like transporter family URS_0115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0115 PF03466 LysR substrate binding domain URS_0116 PF00764 Arginosuccinate synthase URS_0120 PF08299 Bacterial dnaA protein helix-turn-helix URS_0120 PF11638 DnaA N-terminal domain URS_0120 PF00308 Bacterial dnaA protein URS_0121 PF01594 AI-2E family transporter URS_0122 PF00586 AIR synthase related protein, N-terminal domain URS_0122 PF02769 AIR synthase related protein, C-terminal domain URS_0123 PF00551 Formyl transferase URS_0125 PF13817 IS66 C-terminal element URS_0125 PF03050 Transposase IS66 family URS_0125 PF13007 Transposase C of IS166 homeodomain URS_0125 PF13005 zinc-finger binding domain of transposase IS66 URS_0136 PF00692 dUTPase URS_0139 PF01048 Phosphorylase superfamily URS_0140 PF10609 NUBPL iron-transfer P-loop NTPase URS_0142 PF01588 Putative tRNA binding domain URS_0142 PF09334 tRNA synthetases class I (M) URS_0143 PF00753 Metallo-beta-lactamase superfamily URS_0143 PF16123 Hydroxyacylglutathione hydrolase C-terminus URS_0145 PF14226 non-haem dioxygenase in morphine synthesis N-terminal URS_0145 PF03171 2OG-Fe(II) oxygenase superfamily URS_0146 PF00860 Permease family URS_0147 PF01979 Amidohydrolase family URS_0150 PF01810 LysE type translocator URS_0151 PF08241 Methyltransferase domain URS_0154 PF13533 Biotin-lipoyl like URS_0155 PF00291 Pyridoxal-phosphate dependent enzyme URS_0158 PF05552 Conserved TM helix URS_0161 PF00175 Oxidoreductase NAD-binding domain URS_0161 PF00970 Oxidoreductase FAD-binding domain URS_0162 PF03466 LysR substrate binding domain URS_0162 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0163 PF00593 TonB dependent receptor URS_0163 PF07715 TonB-dependent Receptor Plug Domain URS_0164 PF07660 Secretin and TonB N terminus short domain URS_0164 PF07715 TonB-dependent Receptor Plug Domain URS_0164 PF00593 TonB dependent receptor URS_0165 PF00665 Integrase core domain URS_0165 PF13936 Helix-turn-helix domain URS_0166 PF00593 TonB dependent receptor URS_0166 PF07660 Secretin and TonB N terminus short domain URS_0166 PF07715 TonB-dependent Receptor Plug Domain URS_0168 PF00361 Proton-conducting membrane transporter URS_0169 PF00361 Proton-conducting membrane transporter URS_0170 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus URS_0170 PF00361 Proton-conducting membrane transporter URS_0171 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L URS_0172 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 URS_0173 PF12838 4Fe-4S dicluster domain URS_0174 PF00146 NADH dehydrogenase URS_0175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain URS_0175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region URS_0175 PF00384 Molybdopterin oxidoreductase URS_0176 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit URS_0176 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region URS_0176 PF10531 SLBB domain URS_0178 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit URS_0178 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit URS_0179 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit URS_0180 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 URS_0182 PF00672 HAMP domain URS_0182 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0182 PF00512 His Kinase A (phospho-acceptor) domain URS_0183 PF00486 Transcriptional regulatory protein, C terminal URS_0183 PF00072 Response regulator receiver domain URS_0184 PF03477 ATP cone domain URS_0184 PF00317 Ribonucleotide reductase, all-alpha domain URS_0184 PF02867 Ribonucleotide reductase, barrel domain URS_0186 PF00268 Ribonucleotide reductase, small chain URS_0187 PF00580 UvrD/REP helicase N-terminal domain URS_0187 PF13361 UvrD-like helicase C-terminal domain URS_0189 PF13333 Integrase core domain URS_0189 PF00665 Integrase core domain URS_0189 PF13276 HTH-like domain URS_0190 PF01527 Transposase URS_0192 PF04966 Carbohydrate-selective porin, OprB family URS_0193 PF00962 Adenosine/AMP deaminase URS_0195 PF08378 Nuclease-related domain URS_0196 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain URS_0196 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain URS_0197 PF00893 Small Multidrug Resistance protein URS_0201 PF00394 Multicopper oxidase URS_0201 PF07732 Multicopper oxidase URS_0201 PF07731 Multicopper oxidase URS_0203 PF00834 Ribulose-phosphate 3 epimerase family URS_0207 PF05987 Bacterial protein of unknown function (DUF898) URS_0208 PF00756 Putative esterase URS_0210 PF04445 Putative SAM-dependent methyltransferase URS_0211 PF02673 Bacitracin resistance protein BacA URS_0212 PF00814 Glycoprotease family URS_0213 PF00132 Bacterial transferase hexapeptide (six repeats) URS_0214 PF00293 NUDIX domain URS_0222 PF00425 chorismate binding enzyme URS_0222 PF04715 Anthranilate synthase component I, N terminal region URS_0223 PF00155 Aminotransferase class I and II URS_0224 PF00815 Histidinol dehydrogenase URS_0226 PF01634 ATP phosphoribosyltransferase URS_0227 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) URS_0228 PF01722 BolA-like protein URS_0229 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein URS_0230 PF04963 Sigma-54 factor, core binding domain URS_0230 PF04552 Sigma-54, DNA binding domain URS_0230 PF00309 Sigma-54 factor, Activator interacting domain (AID) URS_0239 PF00795 Carbon-nitrogen hydrolase URS_0240 PF01047 MarR family URS_0241 PF00437 Type II/IV secretion system protein URS_0245 PF01612 3'-5' exonuclease URS_0245 PF00476 DNA polymerase family A URS_0245 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain URS_0245 PF01367 5'-3' exonuclease, C-terminal SAM fold URS_0246 PF02325 YGGT family URS_0247 PF14748 Pyrroline-5-carboxylate reductase dimerisation URS_0247 PF03807 NADP oxidoreductase coenzyme F420-dependent URS_0248 PF11734 TilS substrate C-terminal domain URS_0248 PF01171 PP-loop family URS_0248 PF09179 TilS substrate binding domain URS_0249 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit URS_0250 PF02541 Ppx/GppA phosphatase family URS_0251 PF00085 Thioredoxin URS_0252 PF07497 Rho termination factor, RNA-binding domain URS_0252 PF07498 Rho termination factor, N-terminal domain URS_0252 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain URS_0254 PF00216 Bacterial DNA-binding protein URS_0255 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain URS_0255 PF01588 Putative tRNA binding domain URS_0255 PF03484 tRNA synthetase B5 domain URS_0255 PF03483 B3/4 domain URS_0255 PF03147 Ferredoxin-fold anticodon binding domain URS_0256 PF01409 tRNA synthetases class II core domain (F) URS_0256 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain URS_0260 PF00453 Ribosomal protein L20 URS_0261 PF01632 Ribosomal protein L35 URS_0264 PF09335 SNARE associated Golgi protein URS_0265 PF00043 Glutathione S-transferase, C-terminal domain URS_0265 PF02798 Glutathione S-transferase, N-terminal domain URS_0266 PF05198 Translation initiation factor IF-3, N-terminal domain URS_0266 PF00707 Translation initiation factor IF-3, C-terminal domain URS_0267 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) URS_0267 PF02824 TGS domain URS_0267 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain URS_0267 PF03129 Anticodon binding domain URS_0268 PF00501 AMP-binding enzyme URS_0268 PF13193 AMP-binding enzyme C-terminal domain URS_0271 PF13193 AMP-binding enzyme C-terminal domain URS_0271 PF00501 AMP-binding enzyme URS_0272 PF04751 Protein of unknown function (DUF615) URS_0273 PF00381 PTS HPr component phosphorylation site URS_0274 PF03668 P-loop ATPase protein family URS_0275 PF02569 Pantoate-beta-alanine ligase URS_0276 PF02548 Ketopantoate hydroxymethyltransferase URS_0277 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) URS_0278 PF12626 Polymerase A arginine-rich C-terminus URS_0278 PF12627 Probable RNA and SrmB- binding site of polymerase A URS_0278 PF01743 Poly A polymerase head domain URS_0280 PF03819 MazG nucleotide pyrophosphohydrolase domain URS_0282 PF02696 Uncharacterized ACR, YdiU/UPF0061 family URS_0283 PF04237 YjbR URS_0284 PF00072 Response regulator receiver domain URS_0284 PF00486 Transcriptional regulatory protein, C terminal URS_0285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0285 PF00672 HAMP domain URS_0285 PF00512 His Kinase A (phospho-acceptor) domain URS_0287 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_0287 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_0287 PF12806 Acetyl-CoA dehydrogenase C-terminal like URS_0287 PF02770 Acyl-CoA dehydrogenase, middle domain URS_0288 PF12806 Acetyl-CoA dehydrogenase C-terminal like URS_0288 PF02770 Acyl-CoA dehydrogenase, middle domain URS_0288 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_0288 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_0289 PF06146 Phosphate-starvation-inducible E URS_0295 PF07715 TonB-dependent Receptor Plug Domain URS_0295 PF00593 TonB dependent receptor URS_0296 PF00593 TonB dependent receptor URS_0296 PF07715 TonB-dependent Receptor Plug Domain URS_0298 PF02938 GAD domain URS_0298 PF01336 OB-fold nucleic acid binding domain URS_0298 PF00152 tRNA synthetases class II (D, K and N) URS_0301 PF01501 Glycosyl transferase family 8 URS_0301 PF08437 Glycosyl transferase family 8 C-terminal URS_0302 PF00535 Glycosyl transferase family 2 URS_0303 PF13439 Glycosyltransferase Family 4 URS_0303 PF00534 Glycosyl transferases group 1 URS_0305 PF13439 Glycosyltransferase Family 4 URS_0305 PF00534 Glycosyl transferases group 1 URS_0306 PF01522 Polysaccharide deacetylase URS_0308 PF01063 Amino-transferase class IV URS_0309 PF08335 GlnD PII-uridylyltransferase URS_0309 PF03710 Glutamate-ammonia ligase adenylyltransferase URS_0310 PF07689 KaiB domain URS_0310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0310 PF00512 His Kinase A (phospho-acceptor) domain URS_0311 PF00990 Diguanylate cyclase, GGDEF domain URS_0311 PF07694 5TMR of 5TMR-LYT URS_0314 PF02233 NAD(P) transhydrogenase beta subunit URS_0315 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch URS_0316 PF01262 Alanine dehydrogenase/PNT, C-terminal domain URS_0316 PF05222 Alanine dehydrogenase/PNT, N-terminal domain URS_0317 PF00892 EamA-like transporter family URS_0318 PF00376 MerR family regulatory protein URS_0318 PF09278 MerR, DNA binding URS_0320 PF07690 Major Facilitator Superfamily URS_0322 PF01545 Cation efflux family URS_0325 PF00593 TonB dependent receptor URS_0325 PF07715 TonB-dependent Receptor Plug Domain URS_0326 PF18331 PKHD-type hydroxylase C-terminal domain URS_0326 PF13640 2OG-Fe(II) oxygenase superfamily URS_0327 PF00486 Transcriptional regulatory protein, C terminal URS_0327 PF00072 Response regulator receiver domain URS_0328 PF08521 Two-component sensor kinase N-terminal URS_0328 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0328 PF00512 His Kinase A (phospho-acceptor) domain URS_0331 PF00258 Flavodoxin URS_0331 PF00667 FAD binding domain URS_0331 PF00175 Oxidoreductase NAD-binding domain URS_0333 PF02424 ApbE family URS_0336 PF02661 Fic/DOC family URS_0336 PF13784 Fic/DOC family N-terminal URS_0337 PF18766 SWI2/SNF2 ATPase URS_0337 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) URS_0337 PF11867 Domain of unknown function (DUF3387) URS_0340 PF01420 Type I restriction modification DNA specificity domain URS_0341 PF00270 DEAD/DEAH box helicase URS_0341 PF13749 Putative ATP-dependent DNA helicase recG C-terminal URS_0341 PF17191 RecG wedge domain URS_0342 PF02384 N-6 DNA Methylase URS_0359 PF02547 Queuosine biosynthesis protein URS_0361 PF04011 LemA family URS_0362 PF01702 Queuine tRNA-ribosyltransferase URS_0363 PF02699 Preprotein translocase subunit URS_0364 PF13721 SecD export protein N-terminal TM region URS_0364 PF02355 Protein export membrane protein URS_0364 PF07549 SecD/SecF GG Motif URS_0365 PF02355 Protein export membrane protein URS_0365 PF07549 SecD/SecF GG Motif URS_0369 PF02801 Beta-ketoacyl synthase, C-terminal domain URS_0369 PF00109 Beta-ketoacyl synthase, N-terminal domain URS_0372 PF00109 Beta-ketoacyl synthase, N-terminal domain URS_0372 PF02801 Beta-ketoacyl synthase, C-terminal domain URS_0374 PF01494 FAD binding domain URS_0378 PF00221 Aromatic amino acid lyase URS_0381 PF07977 FabA-like domain URS_0383 PF00550 Phosphopantetheine attachment site URS_0384 PF00550 Phosphopantetheine attachment site URS_0387 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal URS_0387 PF01926 50S ribosome-binding GTPase URS_0388 PF13360 PQQ-like domain URS_0390 PF13393 Histidyl-tRNA synthetase URS_0390 PF03129 Anticodon binding domain URS_0391 PF04551 GcpE protein URS_0392 PF13464 Domain of unknown function (DUF4115) URS_0394 PF04055 Radical SAM superfamily URS_0395 PF00334 Nucleoside diphosphate kinase URS_0396 PF04384 Iron-sulphur cluster assembly URS_0397 PF01569 PAP2 superfamily URS_0398 PF13439 Glycosyltransferase Family 4 URS_0398 PF00534 Glycosyl transferases group 1 URS_0399 PF17804 Tail specific protease N-terminal domain URS_0399 PF00595 PDZ domain URS_0399 PF03572 Peptidase family S41 URS_0399 PF11818 C-terminal domain of tail specific protease (DUF3340) URS_0400 PF00933 Glycosyl hydrolase family 3 N terminal domain URS_0402 PF00561 alpha/beta hydrolase fold URS_0403 PF00171 Aldehyde dehydrogenase family URS_0404 PF00871 Acetokinase family URS_0405 PF07085 DRTGG domain URS_0405 PF01515 Phosphate acetyl/butaryl transferase URS_0406 PF00857 Isochorismatase family URS_0408 PF05681 Fumarate hydratase (Fumerase) URS_0408 PF05683 Fumarase C-terminus URS_0409 PF00929 Exonuclease URS_0410 PF03193 RsgA GTPase URS_0412 PF00462 Glutaredoxin URS_0413 PF02556 Preprotein translocase subunit SecB URS_0414 PF07361 Cytochrome b562 URS_0415 PF02441 Flavoprotein URS_0415 PF04127 DNA / pantothenate metabolism flavoprotein URS_0416 PF04002 RadC-like JAB domain URS_0417 PF01062 Bestrophin, RFP-TM, chloride channel URS_0418 PF00248 Aldo/keto reductase family URS_0419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0419 PF03466 LysR substrate binding domain URS_0421 PF04279 Intracellular septation protein A URS_0422 PF03795 YCII-related domain URS_0424 PF01266 FAD dependent oxidoreductase URS_0424 PF05430 S-adenosyl-L-methionine-dependent methyltransferase URS_0426 PF01507 Phosphoadenosine phosphosulfate reductase family URS_0427 PF06974 Protein of unknown function (DUF1298) URS_0427 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain URS_0429 PF10150 Ribonuclease E/G family URS_0429 PF00575 S1 RNA binding domain URS_0430 PF02545 Maf-like protein URS_0432 PF04085 rod shape-determining protein MreC URS_0434 PF02686 Glu-tRNAGln amidotransferase C subunit URS_0435 PF01425 Amidase URS_0436 PF02934 GatB/GatE catalytic domain URS_0436 PF02637 GatB domain URS_0443 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0443 PF03466 LysR substrate binding domain URS_0446 PF05992 SbmA/BacA-like family URS_0451 PF10411 Disulfide bond isomerase protein N-terminus URS_0451 PF13098 Thioredoxin-like domain URS_0454 PF00724 NADH:flavin oxidoreductase / NADH oxidase family URS_0455 PF00593 TonB dependent receptor URS_0455 PF07715 TonB-dependent Receptor Plug Domain URS_0456 PF02245 Methylpurine-DNA glycosylase (MPG) URS_0457 PF06827 Zinc finger found in FPG and IleRS URS_0457 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain URS_0457 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain URS_0458 PF09312 SurA N-terminal domain URS_0458 PF00639 PPIC-type PPIASE domain URS_0460 PF01741 Large-conductance mechanosensitive channel, MscL URS_0462 PF00860 Permease family URS_0463 PF05175 Methyltransferase small domain URS_0463 PF08468 Methyltransferase small domain N-terminal URS_0464 PF00324 Amino acid permease URS_0465 PF01139 tRNA-splicing ligase RtcB URS_0468 PF01584 CheW-like domain URS_0468 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0468 PF01627 Hpt domain URS_0468 PF07194 P2 response regulator binding domain URS_0468 PF02895 Signal transducing histidine kinase, homodimeric domain URS_0469 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain URS_0469 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term URS_0470 PF01584 CheW-like domain URS_0471 PF00072 Response regulator receiver domain URS_0472 PF00072 Response regulator receiver domain URS_0475 PF00873 AcrB/AcrD/AcrF family URS_0476 PF03129 Anticodon binding domain URS_0476 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) URS_0476 PF04073 Aminoacyl-tRNA editing domain URS_0478 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain URS_0478 PF01077 Nitrite and sulphite reductase 4Fe-4S domain URS_0479 PF01011 PQQ enzyme repeat URS_0480 PF04966 Carbohydrate-selective porin, OprB family URS_0481 PF02515 CoA-transferase family III URS_0482 PF02311 AraC-like ligand binding domain URS_0482 PF12833 Helix-turn-helix domain URS_0484 PF01202 Shikimate kinase URS_0485 PF00108 Thiolase, N-terminal domain URS_0485 PF02803 Thiolase, C-terminal domain URS_0486 PF00378 Enoyl-CoA hydratase/isomerase URS_0486 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain URS_0486 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain URS_0488 PF01734 Patatin-like phospholipase URS_0490 PF13673 Acetyltransferase (GNAT) domain URS_0492 PF03006 Haemolysin-III related URS_0493 PF00083 Sugar (and other) transporter URS_0493 PF07690 Major Facilitator Superfamily URS_0494 PF10518 TAT (twin-arginine translocation) pathway signal sequence URS_0494 PF00149 Calcineurin-like phosphoesterase URS_0495 PF13091 PLD-like domain URS_0498 PF16360 GTP-binding GTPase Middle Region URS_0498 PF01926 50S ribosome-binding GTPase URS_0498 PF13167 GTP-binding GTPase N-terminal URS_0502 PF00149 Calcineurin-like phosphoesterase URS_0503 PF00398 Ribosomal RNA adenine dimethylase URS_0504 PF04166 Pyridoxal phosphate biosynthetic protein PdxA URS_0505 PF00572 Ribosomal protein L13 URS_0506 PF00380 Ribosomal protein S9/S16 URS_0507 PF00043 Glutathione S-transferase, C-terminal domain URS_0507 PF02798 Glutathione S-transferase, N-terminal domain URS_0508 PF04386 Stringent starvation protein B URS_0520 PF01066 CDP-alcohol phosphatidyltransferase URS_0521 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ URS_0525 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain URS_0525 PF00056 lactate/malate dehydrogenase, NAD binding domain URS_0527 PF01464 Transglycosylase SLT domain URS_0527 PF01551 Peptidase family M23 URS_0527 PF10145 Phage-related minor tail protein URS_0528 PF04055 Radical SAM superfamily URS_0528 PF00919 Uncharacterized protein family UPF0004 URS_0528 PF01938 TRAM domain URS_0529 PF02562 PhoH-like protein URS_0530 PF02130 Uncharacterized protein family UPF0054 URS_0536 PF03358 NADPH-dependent FMN reductase URS_0537 PF03631 Virulence factor BrkB URS_0540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0540 PF03466 LysR substrate binding domain URS_0541 PF07690 Major Facilitator Superfamily URS_0542 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily URS_0543 PF01557 Fumarylacetoacetate (FAA) hydrolase family URS_0547 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0547 PF00512 His Kinase A (phospho-acceptor) domain URS_0547 PF08448 PAS fold URS_0547 PF00072 Response regulator receiver domain URS_0547 PF13426 PAS domain URS_0552 PF08206 Ribonuclease B OB domain URS_0552 PF08461 Ribonuclease R winged-helix domain URS_0552 PF00575 S1 RNA binding domain URS_0552 PF17876 Cold shock domain URS_0552 PF00773 RNB domain URS_0554 PF01432 Peptidase family M3 URS_0555 PF09526 Probable metal-binding protein (DUF2387) URS_0561 PF03937 Flavinator of succinate dehydrogenase URS_0562 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_0562 PF02770 Acyl-CoA dehydrogenase, middle domain URS_0562 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_0563 PF00743 Flavin-binding monooxygenase-like URS_0564 PF01196 Ribosomal protein L17 URS_0565 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain URS_0565 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain URS_0565 PF01000 RNA polymerase Rpb3/RpoA insert domain URS_0566 PF00163 Ribosomal protein S4/S9 N-terminal domain URS_0566 PF01479 S4 domain URS_0567 PF00411 Ribosomal protein S11 URS_0568 PF00416 Ribosomal protein S13/S18 URS_0569 PF00444 Ribosomal protein L36 URS_0570 PF00344 SecY translocase URS_0571 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A URS_0572 PF00327 Ribosomal protein L30p/L7e URS_0573 PF00333 Ribosomal protein S5, N-terminal domain URS_0573 PF03719 Ribosomal protein S5, C-terminal domain URS_0574 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast URS_0575 PF00347 Ribosomal protein L6 URS_0576 PF00410 Ribosomal protein S8 URS_0577 PF00253 Ribosomal protein S14p/S29e URS_0578 PF00673 ribosomal L5P family C-terminus URS_0578 PF00281 Ribosomal protein L5 URS_0579 PF00467 KOW motif URS_0579 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 URS_0580 PF00238 Ribosomal protein L14p/L23e URS_0581 PF00366 Ribosomal protein S17 URS_0582 PF00831 Ribosomal L29 protein URS_0583 PF00252 Ribosomal protein L16p/L10e URS_0584 PF07650 KH domain URS_0584 PF00189 Ribosomal protein S3, C-terminal domain URS_0585 PF00237 Ribosomal protein L22p/L17e URS_0586 PF00203 Ribosomal protein S19 URS_0587 PF03947 Ribosomal Proteins L2, C-terminal domain URS_0587 PF00181 Ribosomal Proteins L2, RNA binding domain URS_0588 PF00276 Ribosomal protein L23 URS_0589 PF00573 Ribosomal protein L4/L1 family URS_0590 PF00297 Ribosomal protein L3 URS_0591 PF00338 Ribosomal protein S10p/S20e URS_0592 PF00117 Glutamine amidotransferase class-I URS_0593 PF01053 Cys/Met metabolism PLP-dependent enzyme URS_0594 PF05872 Bacterial protein of unknown function (DUF853) URS_0595 PF00970 Oxidoreductase FAD-binding domain URS_0595 PF00175 Oxidoreductase NAD-binding domain URS_0595 PF00042 Globin URS_0596 PF02082 Transcriptional regulator URS_0597 PF01926 50S ribosome-binding GTPase URS_0599 PF00375 Sodium:dicarboxylate symporter family URS_0601 PF01553 Acyltransferase URS_0604 PF00270 DEAD/DEAH box helicase URS_0604 PF00271 Helicase conserved C-terminal domain URS_0604 PF17191 RecG wedge domain URS_0605 PF00156 Phosphoribosyl transferase domain URS_0606 PF00293 NUDIX domain URS_0607 PF03641 Possible lysine decarboxylase URS_0608 PF01544 CorA-like Mg2+ transporter protein URS_0612 PF02405 Permease MlaE URS_0613 PF00005 ABC transporter URS_0615 PF00271 Helicase conserved C-terminal domain URS_0615 PF00270 DEAD/DEAH box helicase URS_0618 PF00459 Inositol monophosphatase family URS_0619 PF13292 1-deoxy-D-xylulose-5-phosphate synthase URS_0619 PF02779 Transketolase, pyrimidine binding domain URS_0619 PF02780 Transketolase, C-terminal domain URS_0620 PF00925 GTP cyclohydrolase II URS_0621 PF01218 Coproporphyrinogen III oxidase URS_0623 PF00691 OmpA family URS_0623 PF13488 Glycine zipper URS_0624 PF08501 Shikimate dehydrogenase substrate binding domain URS_0624 PF18317 Shikimate 5'-dehydrogenase C-terminal domain URS_0624 PF01488 Shikimate / quinate 5-dehydrogenase URS_0627 PF02770 Acyl-CoA dehydrogenase, middle domain URS_0627 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_0627 PF12806 Acetyl-CoA dehydrogenase C-terminal like URS_0627 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_0629 PF04024 PspC domain URS_0630 PF00571 CBS domain URS_0633 PF02091 Glycyl-tRNA synthetase alpha subunit URS_0634 PF02092 Glycyl-tRNA synthetase beta subunit URS_0634 PF05746 DALR anticodon binding domain URS_0636 PF00892 EamA-like transporter family URS_0637 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0637 PF03466 LysR substrate binding domain URS_0640 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain URS_0640 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain URS_0645 PF00248 Aldo/keto reductase family URS_0650 PF13614 AAA domain URS_0651 PF01594 AI-2E family transporter URS_0653 PF13340 Putative transposase of IS4/5 family (DUF4096) URS_0655 PF13333 Integrase core domain URS_0655 PF00665 Integrase core domain URS_0655 PF13276 HTH-like domain URS_0656 PF01527 Transposase URS_0658 PF12805 FUSC-like inner membrane protein yccS URS_0659 PF12823 Domain of unknown function (DUF3817) URS_0660 PF07690 Major Facilitator Superfamily URS_0662 PF02525 Flavodoxin-like fold URS_0663 PF03992 Antibiotic biosynthesis monooxygenase URS_0666 PF01565 FAD binding domain URS_0666 PF02913 FAD linked oxidases, C-terminal domain URS_0667 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain URS_0667 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain URS_0668 PF00892 EamA-like transporter family URS_0669 PF00892 EamA-like transporter family URS_0671 PF01925 Sulfite exporter TauE/SafE URS_0672 PF16198 tRNA pseudouridylate synthase B C-terminal domain URS_0672 PF01509 TruB family pseudouridylate synthase (N terminal domain) URS_0672 PF09157 Pseudouridine synthase II TruB, C-terminal URS_0673 PF03280 Proteobacterial lipase chaperone protein URS_0674 PF00561 alpha/beta hydrolase fold URS_0675 PF01245 Ribosomal protein L19 URS_0676 PF01746 tRNA (Guanine-1)-methyltransferase URS_0677 PF05239 PRC-barrel domain URS_0677 PF01782 RimM N-terminal domain URS_0678 PF00886 Ribosomal protein S16 URS_0680 PF00114 Pilin (bacterial filament) URS_0680 PF07963 Prokaryotic N-terminal methylation motif URS_0685 PF14245 Type IV pilin PilA URS_0685 PF07963 Prokaryotic N-terminal methylation motif URS_0686 PF02401 LytB protein URS_0687 PF00625 Guanylate kinase URS_0688 PF01192 RNA polymerase Rpb6 URS_0689 PF13291 ACT domain URS_0689 PF04607 Region found in RelA / SpoT proteins URS_0689 PF02824 TGS domain URS_0690 PF01042 Endoribonuclease L-PSP URS_0691 PF04324 BFD-like [2Fe-2S] binding domain URS_0692 PF00210 Ferritin-like domain URS_0694 PF01323 DSBA-like thioredoxin domain URS_0697 PF00893 Small Multidrug Resistance protein URS_0698 PF13936 Helix-turn-helix domain URS_0698 PF00665 Integrase core domain URS_0702 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0702 PF00183 Hsp90 protein URS_0705 PF00324 Amino acid permease URS_0706 PF00561 alpha/beta hydrolase fold URS_0709 PF04998 RNA polymerase Rpb1, domain 5 URS_0709 PF05000 RNA polymerase Rpb1, domain 4 URS_0709 PF04983 RNA polymerase Rpb1, domain 3 URS_0709 PF00623 RNA polymerase Rpb1, domain 2 URS_0709 PF04997 RNA polymerase Rpb1, domain 1 URS_0710 PF10385 RNA polymerase beta subunit external 1 domain URS_0710 PF00562 RNA polymerase Rpb2, domain 6 URS_0710 PF04560 RNA polymerase Rpb2, domain 7 URS_0710 PF04563 RNA polymerase beta subunit URS_0710 PF04565 RNA polymerase Rpb2, domain 3 URS_0710 PF04561 RNA polymerase Rpb2, domain 2 URS_0711 PF16320 Ribosomal protein L7/L12 dimerisation domain URS_0711 PF00542 Ribosomal protein L7/L12 C-terminal domain URS_0712 PF00466 Ribosomal protein L10 URS_0713 PF00687 Ribosomal protein L1p/L10e family URS_0714 PF03946 Ribosomal protein L11, N-terminal domain URS_0714 PF00298 Ribosomal protein L11, RNA binding domain URS_0715 PF02357 Transcription termination factor nusG URS_0715 PF00467 KOW motif URS_0716 PF00584 SecE/Sec61-gamma subunits of protein translocation complex URS_0718 PF00009 Elongation factor Tu GTP binding domain URS_0718 PF03144 Elongation factor Tu domain 2 URS_0718 PF03143 Elongation factor Tu C-terminal domain URS_0723 PF04715 Anthranilate synthase component I, N terminal region URS_0723 PF00425 chorismate binding enzyme URS_0724 PF13419 Haloacid dehalogenase-like hydrolase URS_0725 PF00498 FHA domain URS_0725 PF12401 Protein of unknown function (DUF2662) URS_0726 PF03958 Bacterial type II/III secretion system short domain URS_0726 PF00263 Bacterial type II and III secretion system protein URS_0729 PF00816 H-NS histone family URS_0734 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain URS_0734 PF03900 Porphobilinogen deaminase, C-terminal domain URS_0735 PF04397 LytTr DNA-binding domain URS_0735 PF00072 Response regulator receiver domain URS_0736 PF07694 5TMR of 5TMR-LYT URS_0736 PF06580 Histidine kinase URS_0736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0737 PF00206 Lyase URS_0737 PF14698 Argininosuccinate lyase C-terminal URS_0738 PF04362 Bacterial Fe(2+) trafficking URS_0740 PF01895 PhoU domain URS_0742 PF01964 Radical SAM ThiC family URS_0742 PF13667 ThiC-associated domain URS_0743 PF00293 NUDIX domain URS_0744 PF00149 Calcineurin-like phosphoesterase URS_0745 PF01258 Prokaryotic dksA/traR C4-type zinc finger URS_0746 PF00749 tRNA synthetases class I (E and Q), catalytic domain URS_0747 PF01098 Cell cycle protein URS_0748 PF02875 Mur ligase family, glutamate ligase domain URS_0748 PF08245 Mur ligase middle domain URS_0751 PF07670 Nucleoside recognition URS_0751 PF07664 Ferrous iron transport protein B C terminus URS_0751 PF02421 Ferrous iron transport protein B URS_0753 PF02899 Phage integrase, N-terminal SAM-like domain URS_0753 PF00589 Phage integrase family URS_0754 PF13098 Thioredoxin-like domain URS_0754 PF10411 Disulfide bond isomerase protein N-terminus URS_0755 PF00742 Homoserine dehydrogenase URS_0755 PF03447 Homoserine dehydrogenase, NAD binding domain URS_0755 PF01842 ACT domain URS_0756 PF00291 Pyridoxal-phosphate dependent enzyme URS_0757 PF00768 D-alanyl-D-alanine carboxypeptidase URS_0758 PF00072 Response regulator receiver domain URS_0758 PF00196 Bacterial regulatory proteins, luxR family URS_0759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0759 PF00512 His Kinase A (phospho-acceptor) domain URS_0760 PF00158 Sigma-54 interaction domain URS_0760 PF00072 Response regulator receiver domain URS_0760 PF02954 Bacterial regulatory protein, Fis family URS_0761 PF01471 Putative peptidoglycan binding domain URS_0761 PF17820 PDZ domain URS_0761 PF03572 Peptidase family S41 URS_0762 PF06415 BPG-independent PGAM N-terminus (iPGM_N) URS_0762 PF01676 Metalloenzyme superfamily URS_0763 PF03739 Lipopolysaccharide export system permease LptF/LptG URS_0764 PF03739 Lipopolysaccharide export system permease LptF/LptG URS_0765 PF02789 Cytosol aminopeptidase family, N-terminal domain URS_0765 PF00883 Cytosol aminopeptidase family, catalytic domain URS_0769 PF00677 Lumazine binding domain URS_0771 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region URS_0771 PF01872 RibD C-terminal domain URS_0772 PF03477 ATP cone domain URS_0773 PF00909 Ammonium Transporter Family URS_0774 PF00909 Ammonium Transporter Family URS_0775 PF00543 Nitrogen regulatory protein P-II URS_0778 PF13335 Magnesium chelatase, subunit ChlI C-terminal URS_0778 PF01078 Magnesium chelatase, subunit ChlI URS_0782 PF00719 Inorganic pyrophosphatase URS_0785 PF13193 AMP-binding enzyme C-terminal domain URS_0785 PF00501 AMP-binding enzyme URS_0786 PF00521 DNA gyrase/topoisomerase IV, subunit A URS_0786 PF03989 DNA gyrase C-terminal domain, beta-propeller URS_0787 PF07690 Major Facilitator Superfamily URS_0789 PF03458 UPF0126 domain URS_0790 PF02810 SEC-C motif URS_0791 PF03741 Integral membrane protein TerC family URS_0791 PF03471 Transporter associated domain URS_0792 PF03641 Possible lysine decarboxylase URS_0793 PF07690 Major Facilitator Superfamily URS_0794 PF01183 Glycosyl hydrolases family 25 URS_0795 PF11799 impB/mucB/samB family C-terminal domain URS_0795 PF11798 IMS family HHH motif URS_0795 PF00817 impB/mucB/samB family URS_0796 PF07690 Major Facilitator Superfamily URS_0796 PF00083 Sugar (and other) transporter URS_0799 PF08497 Radical SAM N-terminal URS_0799 PF04055 Radical SAM superfamily URS_0799 PF11842 Domain of unknown function (DUF3362) URS_0806 PF00440 Bacterial regulatory proteins, tetR family URS_0811 PF01327 Polypeptide deformylase URS_0812 PF01476 LysM domain URS_0813 PF17782 DprA winged helix domain URS_0813 PF02481 DNA recombination-mediator protein A URS_0814 PF01300 Telomere recombination URS_0820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_0820 PF03466 LysR substrate binding domain URS_0823 PF00355 Rieske [2Fe-2S] domain URS_0823 PF00111 2Fe-2S iron-sulfur cluster binding domain URS_0824 PF02608 ABC transporter substrate-binding protein PnrA-like URS_0825 PF00892 EamA-like transporter family URS_0826 PF00440 Bacterial regulatory proteins, tetR family URS_0827 PF07690 Major Facilitator Superfamily URS_0829 PF00255 Glutathione peroxidase URS_0830 PF05922 Peptidase inhibitor I9 URS_0830 PF00082 Subtilase family URS_0832 PF00872 Transposase, Mutator family URS_0833 PF00107 Zinc-binding dehydrogenase URS_0833 PF08240 Alcohol dehydrogenase GroES-like domain URS_0834 PF01263 Aldose 1-epimerase URS_0836 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain URS_0837 PF02874 ATP synthase alpha/beta family, beta-barrel domain URS_0837 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain URS_0838 PF00231 ATP synthase URS_0839 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain URS_0839 PF00306 ATP synthase alpha/beta chain, C terminal domain URS_0839 PF02874 ATP synthase alpha/beta family, beta-barrel domain URS_0840 PF00213 ATP synthase delta (OSCP) subunit URS_0841 PF00430 ATP synthase B/B' CF(0) URS_0842 PF00137 ATP synthase subunit C URS_0843 PF00119 ATP synthase A chain URS_0847 PF00005 ABC transporter URS_0848 PF00950 ABC 3 transport family URS_0849 PF01810 LysE type translocator URS_0850 PF16671 Actin cross-linking domain URS_0850 PF04717 Type VI secretion system, phage-baseplate injector URS_0851 PF03949 Malic enzyme, NAD binding domain URS_0851 PF00390 Malic enzyme, N-terminal domain URS_0853 PF05746 DALR anticodon binding domain URS_0853 PF03485 Arginyl tRNA synthetase N terminal domain URS_0853 PF00750 tRNA synthetases class I (R) URS_0858 PF02678 Pirin URS_0858 PF05726 Pirin C-terminal cupin domain URS_0860 PF01475 Ferric uptake regulator family URS_0861 PF03551 Transcriptional regulator PadR-like family URS_0862 PF13427 Domain of unknown function (DUF4111) URS_0862 PF01909 Nucleotidyltransferase domain URS_0863 PF00117 Glutamine amidotransferase class-I URS_0863 PF00958 GMP synthase C terminal domain URS_0863 PF02540 NAD synthase URS_0864 PF04076 Bacterial OB fold (BOF) protein URS_0865 PF07681 DoxX URS_0866 PF09335 SNARE associated Golgi protein URS_0871 PF13614 AAA domain URS_0880 PF07120 Protein of unknown function (DUF1376) URS_0882 PF00296 Luciferase-like monooxygenase URS_0885 PF00199 Catalase URS_0887 PF00691 OmpA family URS_0887 PF01389 OmpA-like transmembrane domain URS_0890 PF13359 DDE superfamily endonuclease URS_0890 PF13613 Helix-turn-helix of DDE superfamily endonuclease URS_0891 PF13359 DDE superfamily endonuclease URS_0891 PF13613 Helix-turn-helix of DDE superfamily endonuclease URS_0894 PF02899 Phage integrase, N-terminal SAM-like domain URS_0894 PF00589 Phage integrase family URS_0896 PF07804 HipA-like C-terminal domain URS_0896 PF13657 HipA N-terminal domain URS_0897 PF12419 SNF2 Helicase protein URS_0897 PF00271 Helicase conserved C-terminal domain URS_0897 PF00176 SNF2 family N-terminal domain URS_0899 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit URS_0899 PF02378 Phosphotransferase system, EIIC URS_0900 PF00294 pfkB family carbohydrate kinase URS_0901 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 URS_0901 PF00381 PTS HPr component phosphorylation site URS_0901 PF02896 PEP-utilising enzyme, TIM barrel domain URS_0901 PF05524 PEP-utilising enzyme, N-terminal URS_0901 PF00391 PEP-utilising enzyme, mobile domain URS_0904 PF06100 MCRA family URS_0909 PF02525 Flavodoxin-like fold URS_0910 PF01695 IstB-like ATP binding protein URS_0911 PF02796 Helix-turn-helix domain of resolvase URS_0911 PF00665 Integrase core domain URS_0914 PF02028 BCCT, betaine/carnitine/choline family transporter URS_0917 PF00474 Sodium:solute symporter family URS_0918 PF04341 Protein of unknown function, DUF485 URS_0919 PF09308 LuxQ, periplasmic URS_0919 PF00072 Response regulator receiver domain URS_0919 PF00512 His Kinase A (phospho-acceptor) domain URS_0919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0922 PF00909 Ammonium Transporter Family URS_0923 PF00196 Bacterial regulatory proteins, luxR family URS_0923 PF00072 Response regulator receiver domain URS_0924 PF03358 NADPH-dependent FMN reductase URS_0925 PF00296 Luciferase-like monooxygenase URS_0926 PF07660 Secretin and TonB N terminus short domain URS_0926 PF07715 TonB-dependent Receptor Plug Domain URS_0926 PF00593 TonB dependent receptor URS_0927 PF08028 Acyl-CoA dehydrogenase, C-terminal domain URS_0927 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_0929 PF16177 Acetyl-coenzyme A synthetase N-terminus URS_0929 PF00501 AMP-binding enzyme URS_0929 PF13193 AMP-binding enzyme C-terminal domain URS_0931 PF00924 Mechanosensitive ion channel URS_0931 PF05552 Conserved TM helix URS_0933 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) URS_0935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family URS_0937 PF03462 PCRF domain URS_0937 PF00472 RF-1 domain URS_0940 PF01381 Helix-turn-helix URS_0941 PF01368 DHH family URS_0941 PF02272 DHHA1 domain URS_0941 PF17768 RecJ OB domain URS_0942 PF01243 Pyridoxamine 5'-phosphate oxidase URS_0942 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region URS_0943 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II URS_0943 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I URS_0943 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III URS_0943 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain URS_0944 PF00571 CBS domain URS_0944 PF00478 IMP dehydrogenase / GMP reductase domain URS_0946 PF00258 Flavodoxin URS_0946 PF01613 Flavin reductase like domain URS_0947 PF01169 Uncharacterized protein family UPF0016 URS_0949 PF02817 e3 binding domain URS_0949 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) URS_0949 PF00364 Biotin-requiring enzyme URS_0950 PF00456 Transketolase, thiamine diphosphate binding domain URS_0950 PF17831 Pyruvate dehydrogenase E1 component middle domain URS_0953 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase URS_0954 PF12327 FtsZ family, C-terminal domain URS_0954 PF00091 Tubulin/FtsZ family, GTPase domain URS_0955 PF02491 SHS2 domain inserted in FTSA URS_0956 PF08478 POTRA domain, FtsQ-type URS_0956 PF03799 Cell division protein FtsQ URS_0957 PF01820 D-ala D-ala ligase N-terminus URS_0957 PF07478 D-ala D-ala ligase C-terminus URS_0958 PF02875 Mur ligase family, glutamate ligase domain URS_0958 PF08245 Mur ligase middle domain URS_0958 PF01225 Mur ligase family, catalytic domain URS_0959 PF03033 Glycosyltransferase family 28 N-terminal domain URS_0959 PF04101 Glycosyltransferase family 28 C-terminal domain URS_0960 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain URS_0960 PF02951 Prokaryotic glutathione synthetase, N-terminal domain URS_0961 PF00313 'Cold-shock' DNA-binding domain URS_0962 PF13737 Transposase DDE domain URS_0964 PF00156 Phosphoribosyl transferase domain URS_0965 PF03372 Endonuclease/Exonuclease/phosphatase family URS_0968 PF07859 alpha/beta hydrolase fold URS_0969 PF08448 PAS fold URS_0969 PF00990 Diguanylate cyclase, GGDEF domain URS_0970 PF02798 Glutathione S-transferase, N-terminal domain URS_0970 PF00043 Glutathione S-transferase, C-terminal domain URS_0971 PF02683 Cytochrome C biogenesis protein transmembrane region URS_0971 PF11412 Disulphide bond corrector protein DsbC URS_0977 PF00576 HIUase/Transthyretin family URS_0979 PF00583 Acetyltransferase (GNAT) family URS_0981 PF01494 FAD binding domain URS_0982 PF01494 FAD binding domain URS_0983 PF03561 Allantoicase repeat URS_0984 PF04115 Ureidoglycolate lyase URS_0988 PF01751 Toprim domain URS_0988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_0988 PF00204 DNA gyrase B URS_0988 PF00986 DNA gyrase B subunit, carboxyl terminus URS_0989 PF05728 Uncharacterised protein family (UPF0227) URS_0991 PF02600 Disulfide bond formation protein DsbB URS_0992 PF04262 Glutamate-cysteine ligase URS_0995 PF04286 Protein of unknown function (DUF445) URS_0996 PF00155 Aminotransferase class I and II URS_0997 PF01554 MatE URS_0999 PF00106 short chain dehydrogenase URS_1001 PF00072 Response regulator receiver domain URS_1001 PF00486 Transcriptional regulatory protein, C terminal URS_1002 PF11808 Phosphate regulon sensor protein PhoR URS_1002 PF00512 His Kinase A (phospho-acceptor) domain URS_1002 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_1002 PF00989 PAS fold URS_1003 PF03928 Haem-degrading URS_1004 PF00106 short chain dehydrogenase URS_1006 PF02666 Phosphatidylserine decarboxylase URS_1007 PF00581 Rhodanese-like domain URS_1008 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family URS_1008 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain URS_1009 PF02580 D-Tyr-tRNA(Tyr) deacylase URS_1014 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase URS_1014 PF00925 GTP cyclohydrolase II URS_1015 PF00885 6,7-dimethyl-8-ribityllumazine synthase URS_1016 PF01029 NusB family URS_1017 PF00586 AIR synthase related protein, N-terminal domain URS_1017 PF02769 AIR synthase related protein, C-terminal domain URS_1018 PF04608 Phosphatidylglycerophosphatase A URS_1019 PF00132 Bacterial transferase hexapeptide (six repeats) URS_1019 PF12804 MobA-like NTP transferase domain URS_1019 PF14602 Hexapeptide repeat of succinyl-transferase URS_1020 PF01380 SIS domain URS_1023 PF02753 Pili assembly chaperone PapD, C-terminal domain URS_1023 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain URS_1025 PF13953 PapC C-terminal domain URS_1025 PF13954 PapC N-terminal domain URS_1025 PF00577 Outer membrane usher protein URS_1026 PF02753 Pili assembly chaperone PapD, C-terminal domain URS_1026 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain URS_1029 PF14542 GCN5-related N-acetyl-transferase URS_1030 PF01758 Sodium Bile acid symporter family URS_1031 PF00857 Isochorismatase family URS_1032 PF00701 Dihydrodipicolinate synthetase family URS_1034 PF01259 SAICAR synthetase URS_1036 PF01226 Formate/nitrite transporter URS_1037 PF16193 AAA C-terminal domain URS_1037 PF00004 ATPase family associated with various cellular activities (AAA) URS_1037 PF12002 MgsA AAA+ ATPase C terminal URS_1038 PF00144 Beta-lactamase URS_1039 PF07995 Glucose / Sorbosone dehydrogenase URS_1040 PF13411 MerR HTH family regulatory protein URS_1042 PF03692 Putative zinc- or iron-chelating domain URS_1043 PF07043 Protein of unknown function (DUF1328) URS_1044 PF01738 Dienelactone hydrolase family URS_1045 PF01230 HIT domain URS_1046 PF14815 NUDIX domain URS_1046 PF00730 HhH-GPD superfamily base excision DNA repair protein URS_1049 PF03352 Methyladenine glycosylase URS_1050 PF08240 Alcohol dehydrogenase GroES-like domain URS_1050 PF00107 Zinc-binding dehydrogenase URS_1051 PF00392 Bacterial regulatory proteins, gntR family URS_1051 PF00155 Aminotransferase class I and II URS_1053 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1053 PF03466 LysR substrate binding domain URS_1054 PF07690 Major Facilitator Superfamily URS_1057 PF05173 Dihydrodipicolinate reductase, C-terminus URS_1057 PF01113 Dihydrodipicolinate reductase, N-terminus URS_1058 PF00684 DnaJ central domain URS_1058 PF01556 DnaJ C terminal domain URS_1058 PF00226 DnaJ domain URS_1060 PF00873 AcrB/AcrD/AcrF family URS_1061 PF13533 Biotin-lipoyl like URS_1062 PF00440 Bacterial regulatory proteins, tetR family URS_1063 PF00311 Phosphoenolpyruvate carboxylase URS_1064 PF00860 Permease family URS_1067 PF00497 Bacterial extracellular solute-binding proteins, family 3 URS_1069 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_1071 PF00920 Dehydratase family URS_1072 PF00551 Formyl transferase URS_1072 PF02911 Formyl transferase, C-terminal domain URS_1073 PF01189 16S rRNA methyltransferase RsmB/F URS_1073 PF01029 NusB family URS_1074 PF02535 ZIP Zinc transporter URS_1076 PF00209 Sodium:neurotransmitter symporter family URS_1077 PF00171 Aldehyde dehydrogenase family URS_1079 PF15887 Putative zinc-binding metallo-peptidase URS_1079 PF10005 zinc-ribbon domain URS_1080 PF01965 DJ-1/PfpI family URS_1086 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD URS_1087 PF07859 alpha/beta hydrolase fold URS_1091 PF03466 LysR substrate binding domain URS_1091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1092 PF01025 GrpE URS_1093 PF00012 Hsp70 protein URS_1096 PF13406 Transglycosylase SLT domain URS_1098 PF02222 ATP-grasp domain URS_1098 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain URS_1099 PF00731 AIR carboxylase URS_1102 PF02875 Mur ligase family, glutamate ligase domain URS_1102 PF08245 Mur ligase middle domain URS_1102 PF01225 Mur ligase family, catalytic domain URS_1107 PF03741 Integral membrane protein TerC family URS_1109 PF01979 Amidohydrolase family URS_1111 PF00156 Phosphoribosyl transferase domain URS_1114 PF13098 Thioredoxin-like domain URS_1114 PF10411 Disulfide bond isomerase protein N-terminus URS_1115 PF01926 50S ribosome-binding GTPase URS_1115 PF12631 MnmE helical domain URS_1115 PF10396 GTP-binding protein TrmE N-terminus URS_1116 PF02096 60Kd inner membrane protein URS_1116 PF14849 YidC periplasmic domain URS_1117 PF01809 Putative membrane protein insertion efficiency factor URS_1118 PF00825 Ribonuclease P URS_1119 PF00468 Ribosomal protein L34 URS_1120 PF00308 Bacterial dnaA protein URS_1120 PF08299 Bacterial dnaA protein helix-turn-helix URS_1120 PF11638 DnaA N-terminal domain URS_1121 PF02768 DNA polymerase III beta subunit, C-terminal domain URS_1121 PF00712 DNA polymerase III beta subunit, N-terminal domain URS_1121 PF02767 DNA polymerase III beta subunit, central domain URS_1122 PF02463 RecF/RecN/SMC N terminal domain URS_1123 PF00986 DNA gyrase B subunit, carboxyl terminus URS_1123 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_1123 PF01751 Toprim domain URS_1123 PF18053 DNA gyrase B subunit insert domain URS_1123 PF00204 DNA gyrase B URS_1125 PF12848 ABC transporter URS_1125 PF00005 ABC transporter URS_1129 PF01521 Iron-sulphur cluster biosynthesis URS_1130 PF03702 Anhydro-N-acetylmuramic acid kinase URS_1131 PF00579 tRNA synthetases class I (W and Y) URS_1144 PF13276 HTH-like domain URS_1144 PF00665 Integrase core domain URS_1144 PF13333 Integrase core domain URS_1145 PF01527 Transposase URS_1148 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase URS_1149 PF01252 Signal peptidase (SPase) II URS_1150 PF00133 tRNA synthetases class I (I, L, M and V) URS_1150 PF08264 Anticodon-binding domain of tRNA URS_1150 PF06827 Zinc finger found in FPG and IleRS URS_1151 PF01687 Riboflavin kinase URS_1151 PF06574 FAD synthetase URS_1154 PF12697 Alpha/beta hydrolase family URS_1155 PF00440 Bacterial regulatory proteins, tetR family URS_1155 PF08362 YcdC-like protein, C-terminal region URS_1156 PF00296 Luciferase-like monooxygenase URS_1157 PF00857 Isochorismatase family URS_1158 PF01042 Endoribonuclease L-PSP URS_1159 PF01613 Flavin reductase like domain URS_1160 PF00860 Permease family URS_1161 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase URS_1161 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase URS_1162 PF00005 ABC transporter URS_1163 PF00528 Binding-protein-dependent transport system inner membrane component URS_1164 PF00296 Luciferase-like monooxygenase URS_1165 PF09084 NMT1/THI5 like URS_1166 PF09084 NMT1/THI5 like URS_1167 PF00696 Amino acid kinase family URS_1167 PF00583 Acetyltransferase (GNAT) family URS_1171 PF00106 short chain dehydrogenase URS_1172 PF13419 Haloacid dehalogenase-like hydrolase URS_1174 PF01323 DSBA-like thioredoxin domain URS_1175 PF00440 Bacterial regulatory proteins, tetR family URS_1175 PF08360 QacR-like protein, C-terminal region URS_1176 PF00440 Bacterial regulatory proteins, tetR family URS_1177 PF00175 Oxidoreductase NAD-binding domain URS_1178 PF00487 Fatty acid desaturase URS_1179 PF01138 3' exoribonuclease family, domain 1 URS_1179 PF03725 3' exoribonuclease family, domain 2 URS_1180 PF04185 Phosphoesterase family URS_1180 PF05506 Domain of unknown function (DUF756) URS_1182 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain URS_1182 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain URS_1183 PF01510 N-acetylmuramoyl-L-alanine amidase URS_1184 PF03023 Lipid II flippase MurJ URS_1186 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase URS_1186 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase URS_1187 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase URS_1187 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase URS_1189 PF02706 Chain length determinant protein URS_1189 PF13614 AAA domain URS_1189 PF13807 G-rich domain on putative tyrosine kinase URS_1190 PF01451 Low molecular weight phosphotyrosine protein phosphatase URS_1191 PF18412 Outer-membrane lipoprotein Wza C-terminal domain URS_1191 PF10531 SLBB domain URS_1191 PF02563 Polysaccharide biosynthesis/export protein URS_1192 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain URS_1192 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain URS_1192 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain URS_1193 PF16363 GDP-mannose 4,6 dehydratase URS_1194 PF04321 RmlD substrate binding domain URS_1195 PF00483 Nucleotidyl transferase URS_1196 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase URS_1200 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) URS_1202 PF13439 Glycosyltransferase Family 4 URS_1203 PF00534 Glycosyl transferases group 1 URS_1203 PF13439 Glycosyltransferase Family 4 URS_1204 PF01050 Mannose-6-phosphate isomerase URS_1204 PF00483 Nucleotidyl transferase URS_1205 PF02397 Bacterial sugar transferase URS_1206 PF00483 Nucleotidyl transferase URS_1207 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain URS_1207 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain URS_1207 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain URS_1208 PF00342 Phosphoglucose isomerase URS_1209 PF16363 GDP-mannose 4,6 dehydratase URS_1210 PF14052 Capsule assembly protein Wzi URS_1212 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain URS_1212 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III URS_1212 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II URS_1212 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I URS_1213 PF03466 LysR substrate binding domain URS_1213 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1214 PF02652 L-lactate permease URS_1215 PF07729 FCD domain URS_1215 PF00392 Bacterial regulatory proteins, gntR family URS_1216 PF01070 FMN-dependent dehydrogenase URS_1217 PF09330 D-lactate dehydrogenase, membrane binding URS_1217 PF01565 FAD binding domain URS_1219 PF00155 Aminotransferase class I and II URS_1220 PF01037 Lrp/AsnC ligand binding domain URS_1221 PF01266 FAD dependent oxidoreductase URS_1222 PF01168 Alanine racemase, N-terminal domain URS_1222 PF00842 Alanine racemase, C-terminal domain URS_1223 PF01042 Endoribonuclease L-PSP URS_1224 PF00324 Amino acid permease URS_1225 PF06969 HemN C-terminal domain URS_1225 PF04055 Radical SAM superfamily URS_1226 PF03459 TOBE domain URS_1226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1229 PF02321 Outer membrane efflux protein URS_1230 PF00005 ABC transporter URS_1230 PF00664 ABC transporter transmembrane region URS_1230 PF03412 Peptidase C39 family URS_1234 PF13533 Biotin-lipoyl like URS_1236 PF00857 Isochorismatase family URS_1237 PF05726 Pirin C-terminal cupin domain URS_1237 PF02678 Pirin URS_1238 PF01593 Flavin containing amine oxidoreductase URS_1241 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily URS_1242 PF17158 Membrane-associated sensor, integral membrane domain URS_1242 PF00990 Diguanylate cyclase, GGDEF domain URS_1244 PF17755 UvrA DNA-binding domain URS_1244 PF17760 UvrA interaction domain URS_1247 PF06942 GlpM protein URS_1249 PF03070 TENA/THI-4/PQQC family URS_1251 PF07690 Major Facilitator Superfamily URS_1252 PF00436 Single-strand binding protein family URS_1254 PF01557 Fumarylacetoacetate (FAA) hydrolase family URS_1255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily URS_1256 PF01494 FAD binding domain URS_1257 PF01144 Coenzyme A transferase URS_1258 PF01144 Coenzyme A transferase URS_1265 PF03050 Transposase IS66 family URS_1265 PF13817 IS66 C-terminal element URS_1265 PF13007 Transposase C of IS166 homeodomain URS_1265 PF13005 zinc-finger binding domain of transposase IS66 URS_1266 PF00665 Integrase core domain URS_1266 PF02796 Helix-turn-helix domain of resolvase URS_1267 PF01695 IstB-like ATP binding protein URS_1268 PF13005 zinc-finger binding domain of transposase IS66 URS_1268 PF13817 IS66 C-terminal element URS_1268 PF03050 Transposase IS66 family URS_1268 PF13007 Transposase C of IS166 homeodomain URS_1272 PF13784 Fic/DOC family N-terminal URS_1272 PF02661 Fic/DOC family URS_1287 PF09565 NgoFVII restriction endonuclease URS_1288 PF00145 C-5 cytosine-specific DNA methylase URS_1289 PF13356 Arm DNA-binding domain URS_1289 PF00589 Phage integrase family URS_1291 PF02705 K+ potassium transporter URS_1295 PF00230 Major intrinsic protein URS_1298 PF00977 Histidine biosynthesis protein URS_1299 PF01636 Phosphotransferase enzyme family URS_1302 PF13737 Transposase DDE domain URS_1304 PF00324 Amino acid permease URS_1305 PF01266 FAD dependent oxidoreductase URS_1306 PF00664 ABC transporter transmembrane region URS_1306 PF00005 ABC transporter URS_1307 PF13193 AMP-binding enzyme C-terminal domain URS_1307 PF00550 Phosphopantetheine attachment site URS_1307 PF00668 Condensation domain URS_1307 PF00501 AMP-binding enzyme URS_1307 PF00975 Thioesterase domain URS_1309 PF00977 Histidine biosynthesis protein URS_1311 PF00117 Glutamine amidotransferase class-I URS_1312 PF00475 Imidazoleglycerol-phosphate dehydratase URS_1318 PF00583 Acetyltransferase (GNAT) family URS_1319 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain URS_1319 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain URS_1320 PF00672 HAMP domain URS_1320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_1320 PF00512 His Kinase A (phospho-acceptor) domain URS_1321 PF00486 Transcriptional regulatory protein, C terminal URS_1321 PF00072 Response regulator receiver domain URS_1322 PF16921 Tex protein YqgF-like domain URS_1322 PF00575 S1 RNA binding domain URS_1322 PF09371 Tex-like protein N-terminal domain URS_1322 PF17674 HHH domain URS_1325 PF00106 short chain dehydrogenase URS_1326 PF01053 Cys/Met metabolism PLP-dependent enzyme URS_1327 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain URS_1327 PF00205 Thiamine pyrophosphate enzyme, central domain URS_1327 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain URS_1328 PF12848 ABC transporter URS_1328 PF00005 ABC transporter URS_1333 PF00529 HlyD membrane-fusion protein of T1SS URS_1333 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion URS_1334 PF00873 AcrB/AcrD/AcrF family URS_1335 PF01545 Cation efflux family URS_1339 PF00749 tRNA synthetases class I (E and Q), catalytic domain URS_1342 PF01795 MraW methylase family URS_1344 PF00905 Penicillin binding protein transpeptidase domain URS_1344 PF03717 Penicillin-binding Protein dimerisation domain URS_1345 PF08245 Mur ligase middle domain URS_1345 PF02875 Mur ligase family, glutamate ligase domain URS_1345 PF01225 Mur ligase family, catalytic domain URS_1346 PF02875 Mur ligase family, glutamate ligase domain URS_1346 PF08245 Mur ligase middle domain URS_1346 PF01225 Mur ligase family, catalytic domain URS_1347 PF00953 Glycosyl transferase family 4 URS_1348 PF13847 Methyltransferase domain URS_1349 PF00912 Transglycosylase URS_1349 PF00905 Penicillin binding protein transpeptidase domain URS_1349 PF17092 Penicillin-binding protein OB-like domain URS_1354 PF03958 Bacterial type II/III secretion system short domain URS_1354 PF07660 Secretin and TonB N terminus short domain URS_1354 PF00263 Bacterial type II and III secretion system protein URS_1354 PF11741 AMIN domain URS_1355 PF01202 Shikimate kinase URS_1356 PF01761 3-dehydroquinate synthase URS_1358 PF00310 Glutamine amidotransferases class-II URS_1358 PF04898 Glutamate synthase central domain URS_1358 PF01645 Conserved region in glutamate synthase URS_1358 PF01493 GXGXG motif URS_1359 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster URS_1359 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_1360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1360 PF03466 LysR substrate binding domain URS_1361 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_1361 PF02770 Acyl-CoA dehydrogenase, middle domain URS_1361 PF18158 Adaptive response protein AidB N-terminal domain URS_1362 PF02515 CoA-transferase family III URS_1363 PF07690 Major Facilitator Superfamily URS_1363 PF00083 Sugar (and other) transporter URS_1366 PF04011 LemA family URS_1367 PF04536 TPM domain URS_1380 PF00114 Pilin (bacterial filament) URS_1380 PF07963 Prokaryotic N-terminal methylation motif URS_1381 PF07963 Prokaryotic N-terminal methylation motif URS_1381 PF00114 Pilin (bacterial filament) URS_1382 PF11846 Virulence factor membrane-bound polymerase, C-terminal URS_1382 PF15864 Protein glycosylation ligase URS_1382 PF04932 O-Antigen ligase URS_1384 PF04932 O-Antigen ligase URS_1384 PF11846 Virulence factor membrane-bound polymerase, C-terminal URS_1384 PF15864 Protein glycosylation ligase URS_1385 PF13784 Fic/DOC family N-terminal URS_1385 PF02661 Fic/DOC family URS_1386 PF02803 Thiolase, C-terminal domain URS_1386 PF00108 Thiolase, N-terminal domain URS_1387 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain URS_1387 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain URS_1387 PF00378 Enoyl-CoA hydratase/isomerase URS_1391 PF08459 UvrC Helix-hairpin-helix N-terminal URS_1391 PF02151 UvrB/uvrC motif URS_1391 PF01541 GIY-YIG catalytic domain URS_1393 PF01066 CDP-alcohol phosphatidyltransferase URS_1394 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain URS_1394 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain URS_1394 PF02805 Metal binding domain of Ada URS_1394 PF12833 Helix-turn-helix domain URS_1396 PF00664 ABC transporter transmembrane region URS_1396 PF00005 ABC transporter URS_1399 PF04632 Fusaric acid resistance protein family URS_1401 PF13533 Biotin-lipoyl like URS_1402 PF03652 Holliday junction resolvase URS_1403 PF02622 Uncharacterized ACR, COG1678 URS_1404 PF02463 RecF/RecN/SMC N terminal domain URS_1405 PF06865 Pyrimidine/purine nucleoside phosphorylase URS_1406 PF08032 RNA 2'-O ribose methyltransferase substrate binding URS_1406 PF00588 SpoU rRNA Methylase family URS_1408 PF01121 Dephospho-CoA kinase URS_1409 PF06750 Bacterial Peptidase A24 N-terminal domain URS_1409 PF01478 Type IV leader peptidase family URS_1410 PF00482 Type II secretion system (T2SS), protein F URS_1411 PF00437 Type II/IV secretion system protein URS_1411 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain URS_1412 PF00121 Triosephosphate isomerase URS_1413 PF03840 Preprotein translocase SecG subunit URS_1417 PF17384 RimP C-terminal SH3 domain URS_1417 PF02576 RimP N-terminal domain URS_1418 PF00575 S1 RNA binding domain URS_1418 PF13184 NusA-like KH domain URS_1418 PF08529 NusA N-terminal domain URS_1419 PF04760 Translation initiation factor IF-2, N-terminal region URS_1419 PF08364 Bacterial translation initiation factor IF-2 associated region URS_1419 PF11987 Translation-initiation factor 2 URS_1419 PF00009 Elongation factor Tu GTP binding domain URS_1420 PF02033 Ribosome-binding factor A URS_1422 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) URS_1424 PF00361 Proton-conducting membrane transporter URS_1425 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L URS_1426 PF13244 Domain of unknown function (DUF4040) URS_1426 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus URS_1426 PF00361 Proton-conducting membrane transporter URS_1426 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter URS_1429 PF01502 Phosphoribosyl-AMP cyclohydrolase URS_1430 PF01494 FAD binding domain URS_1431 PF03109 ABC1 family URS_1433 PF01209 ubiE/COQ5 methyltransferase family URS_1435 PF03976 Polyphosphate kinase 2 (PPK2) URS_1436 PF07690 Major Facilitator Superfamily URS_1438 PF17946 RecC C-terminal domain URS_1439 PF00580 UvrD/REP helicase N-terminal domain URS_1439 PF12705 PD-(D/E)XK nuclease superfamily URS_1439 PF13361 UvrD-like helicase C-terminal domain URS_1441 PF13538 UvrD-like helicase C-terminal domain URS_1443 PF00312 Ribosomal protein S15 URS_1444 PF00013 KH domain URS_1444 PF01138 3' exoribonuclease family, domain 1 URS_1444 PF00575 S1 RNA binding domain URS_1444 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain URS_1444 PF03725 3' exoribonuclease family, domain 2 URS_1445 PF04325 Protein of unknown function (DUF465) URS_1446 PF01544 CorA-like Mg2+ transporter protein URS_1447 PF02537 CrcB-like protein, Camphor Resistance (CrcB) URS_1450 PF01556 DnaJ C terminal domain URS_1450 PF00226 DnaJ domain URS_1451 PF01430 Hsp33 protein URS_1452 PF00999 Sodium/hydrogen exchanger family URS_1452 PF02254 TrkA-N domain URS_1453 PF17764 3′ DNA-binding domain (3′BD) URS_1453 PF00271 Helicase conserved C-terminal domain URS_1453 PF18319 PriA DNA helicase Cys-rich region (CRR) domain URS_1453 PF00270 DEAD/DEAH box helicase URS_1453 PF18074 Primosomal protein N C-terminal domain URS_1454 PF00482 Type II secretion system (T2SS), protein F URS_1455 PF07963 Prokaryotic N-terminal methylation motif URS_1455 PF08334 Type II secretion system (T2SS), protein G URS_1457 PF01588 Putative tRNA binding domain URS_1458 PF00795 Carbon-nitrogen hydrolase URS_1459 PF00571 CBS domain URS_1459 PF03471 Transporter associated domain URS_1460 PF01206 Sulfurtransferase TusA URS_1461 PF01810 LysE type translocator URS_1465 PF01177 Asp/Glu/Hydantoin racemase URS_1467 PF00762 Ferrochelatase URS_1468 PF00753 Metallo-beta-lactamase superfamily URS_1470 PF03884 DNA gyrase inhibitor YacG URS_1472 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster URS_1472 PF13247 4Fe-4S dicluster domain URS_1472 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_1475 PF01717 Cobalamin-independent synthase, Catalytic domain URS_1475 PF08267 Cobalamin-independent synthase, N-terminal domain URS_1476 PF01613 Flavin reductase like domain URS_1478 PF01197 Ribosomal protein L31 URS_1479 PF03109 ABC1 family URS_1480 PF08028 Acyl-CoA dehydrogenase, C-terminal domain URS_1480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_1481 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_1481 PF02770 Acyl-CoA dehydrogenase, middle domain URS_1481 PF08028 Acyl-CoA dehydrogenase, C-terminal domain URS_1483 PF01554 MatE URS_1485 PF04055 Radical SAM superfamily URS_1485 PF06969 HemN C-terminal domain URS_1486 PF07715 TonB-dependent Receptor Plug Domain URS_1486 PF00593 TonB dependent receptor URS_1487 PF08281 Sigma-70, region 4 URS_1487 PF04542 Sigma-70 region 2 URS_1489 PF00106 short chain dehydrogenase URS_1490 PF03466 LysR substrate binding domain URS_1490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1491 PF00578 AhpC/TSA family URS_1491 PF10417 C-terminal domain of 1-Cys peroxiredoxin URS_1494 PF00501 AMP-binding enzyme URS_1494 PF13193 AMP-binding enzyme C-terminal domain URS_1495 PF12111 Polyribonucleotide phosphorylase C terminal URS_1495 PF10150 Ribonuclease E/G family URS_1495 PF00575 S1 RNA binding domain URS_1497 PF00849 RNA pseudouridylate synthase URS_1497 PF01479 S4 domain URS_1500 PF03466 LysR substrate binding domain URS_1500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1502 PF12706 Beta-lactamase superfamily domain URS_1503 PF01011 PQQ enzyme repeat URS_1503 PF13360 PQQ-like domain URS_1504 PF00199 Catalase URS_1504 PF06628 Catalase-related immune-responsive URS_1506 PF02770 Acyl-CoA dehydrogenase, middle domain URS_1506 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_1506 PF18158 Adaptive response protein AidB N-terminal domain URS_1507 PF05524 PEP-utilising enzyme, N-terminal URS_1507 PF00391 PEP-utilising enzyme, mobile domain URS_1507 PF02896 PEP-utilising enzyme, TIM barrel domain URS_1507 PF01590 GAF domain URS_1508 PF00293 NUDIX domain URS_1512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1512 PF03466 LysR substrate binding domain URS_1515 PF00330 Aconitase family (aconitate hydratase) URS_1516 PF00694 Aconitase C-terminal domain URS_1518 PF00180 Isocitrate/isopropylmalate dehydrogenase URS_1520 PF01176 Translation initiation factor 1A / IF-1 URS_1523 PF01416 tRNA pseudouridine synthase URS_1527 PF01118 Semialdehyde dehydrogenase, NAD binding domain URS_1527 PF02774 Semialdehyde dehydrogenase, dimerisation domain URS_1530 PF00375 Sodium:dicarboxylate symporter family URS_1531 PF13439 Glycosyltransferase Family 4 URS_1531 PF00534 Glycosyl transferases group 1 URS_1532 PF03279 Bacterial lipid A biosynthesis acyltransferase URS_1538 PF01396 Topoisomerase DNA binding C4 zinc finger URS_1538 PF01751 Toprim domain URS_1538 PF01131 DNA topoisomerase URS_1538 PF08272 Topoisomerase I zinc-ribbon-like URS_1541 PF00360 Phytochrome region URS_1541 PF00990 Diguanylate cyclase, GGDEF domain URS_1541 PF00563 EAL domain URS_1541 PF01590 GAF domain URS_1543 PF13361 UvrD-like helicase C-terminal domain URS_1543 PF00580 UvrD/REP helicase N-terminal domain URS_1547 PF00999 Sodium/hydrogen exchanger family URS_1547 PF02254 TrkA-N domain URS_1548 PF00471 Ribosomal protein L33 URS_1549 PF00171 Aldehyde dehydrogenase family URS_1550 PF08360 QacR-like protein, C-terminal region URS_1550 PF00440 Bacterial regulatory proteins, tetR family URS_1551 PF01842 ACT domain URS_1551 PF00551 Formyl transferase URS_1552 PF03544 Gram-negative bacterial TonB protein C-terminal URS_1553 PF01618 MotA/TolQ/ExbB proton channel family URS_1555 PF01625 Peptide methionine sulfoxide reductase URS_1558 PF00186 Dihydrofolate reductase URS_1559 PF00303 Thymidylate synthase URS_1562 PF01790 Prolipoprotein diacylglyceryl transferase URS_1565 PF00902 Sec-independent protein translocase protein (TatC) URS_1566 PF02416 mttA/Hcf106 family URS_1567 PF02416 mttA/Hcf106 family URS_1569 PF01725 Ham1 family URS_1571 PF07021 Methionine biosynthesis protein MetW URS_1571 PF00561 alpha/beta hydrolase fold URS_1572 PF00561 alpha/beta hydrolase fold URS_1573 PF00682 HMGL-like URS_1573 PF08502 LeuA allosteric (dimerisation) domain URS_1574 PF18331 PKHD-type hydroxylase C-terminal domain URS_1574 PF13640 2OG-Fe(II) oxygenase superfamily URS_1575 PF00593 TonB dependent receptor URS_1575 PF07715 TonB-dependent Receptor Plug Domain URS_1576 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase URS_1576 PF05698 Bacterial trigger factor protein (TF) C-terminus URS_1576 PF05697 Bacterial trigger factor protein (TF) URS_1577 PF00574 Clp protease URS_1578 PF07724 AAA domain (Cdc48 subfamily) URS_1578 PF10431 C-terminal, D2-small domain, of ClpB protein URS_1578 PF06689 ClpX C4-type zinc finger URS_1582 PF01261 Xylose isomerase-like TIM barrel URS_1583 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase URS_1583 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase URS_1584 PF00378 Enoyl-CoA hydratase/isomerase URS_1585 PF00672 HAMP domain URS_1585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_1585 PF00072 Response regulator receiver domain URS_1585 PF01627 Hpt domain URS_1585 PF00512 His Kinase A (phospho-acceptor) domain URS_1585 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) URS_1586 PF00291 Pyridoxal-phosphate dependent enzyme URS_1588 PF05958 tRNA (Uracil-5-)-methyltransferase URS_1589 PF04607 Region found in RelA / SpoT proteins URS_1589 PF13291 ACT domain URS_1589 PF02824 TGS domain URS_1593 PF01923 Cobalamin adenosyltransferase URS_1594 PF07715 TonB-dependent Receptor Plug Domain URS_1594 PF00593 TonB dependent receptor URS_1595 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase URS_1596 PF00291 Pyridoxal-phosphate dependent enzyme URS_1602 PF00290 Tryptophan synthase alpha chain URS_1603 PF01039 Carboxyl transferase domain URS_1604 PF02875 Mur ligase family, glutamate ligase domain URS_1604 PF08245 Mur ligase middle domain URS_1607 PF00753 Metallo-beta-lactamase superfamily URS_1608 PF00578 AhpC/TSA family URS_1608 PF10417 C-terminal domain of 1-Cys peroxiredoxin URS_1609 PF07517 SecA DEAD-like domain URS_1609 PF01043 SecA preprotein cross-linking domain URS_1609 PF07516 SecA Wing and Scaffold domain URS_1609 PF02810 SEC-C motif URS_1611 PF01960 ArgJ family URS_1612 PF02445 Quinolinate synthetase A protein URS_1617 PF13488 Glycine zipper URS_1617 PF00691 OmpA family URS_1618 PF17152 Periplasmic sensor domain URS_1618 PF00990 Diguanylate cyclase, GGDEF domain URS_1625 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_1625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain URS_1627 PF04273 Putative phosphatase (DUF442) URS_1627 PF00753 Metallo-beta-lactamase superfamily URS_1629 PF00085 Thioredoxin URS_1630 PF03061 Thioesterase superfamily URS_1631 PF13185 GAF domain URS_1633 PF04461 Protein of unknown function (DUF520) URS_1634 PF00581 Rhodanese-like domain URS_1637 PF13333 Integrase core domain URS_1637 PF13276 HTH-like domain URS_1637 PF00665 Integrase core domain URS_1640 PF02803 Thiolase, C-terminal domain URS_1640 PF00108 Thiolase, N-terminal domain URS_1641 PF00691 OmpA family URS_1641 PF13505 Outer membrane protein beta-barrel domain URS_1642 PF07687 Peptidase dimerisation domain URS_1642 PF01546 Peptidase family M20/M25/M40 URS_1643 PF08085 Entericidin EcnA/B family URS_1645 PF04304 Protein of unknown function (DUF454) URS_1646 PF17969 L,D-transpeptidase C-terminal domain URS_1646 PF03734 L,D-transpeptidase catalytic domain URS_1655 PF00667 FAD binding domain URS_1655 PF00175 Oxidoreductase NAD-binding domain URS_1655 PF00258 Flavodoxin URS_1657 PF12805 FUSC-like inner membrane protein yccS URS_1658 PF07690 Major Facilitator Superfamily URS_1659 PF00881 Nitroreductase family URS_1661 PF03616 Sodium/glutamate symporter URS_1662 PF01235 Sodium:alanine symporter family URS_1663 PF01734 Patatin-like phospholipase URS_1664 PF00849 RNA pseudouridylate synthase URS_1666 PF03831 PhnA domain URS_1666 PF08274 PhnA Zinc-Ribbon URS_1667 PF00293 NUDIX domain URS_1668 PF07411 Domain of unknown function (DUF1508) URS_1671 PF01207 Dihydrouridine synthase (Dus) URS_1673 PF02978 Signal peptide binding domain URS_1673 PF00448 SRP54-type protein, GTPase domain URS_1673 PF02881 SRP54-type protein, helical bundle domain URS_1674 PF06821 Serine hydrolase URS_1675 PF03309 Type III pantothenate kinase URS_1676 PF08279 HTH domain URS_1676 PF03099 Biotin/lipoate A/B protein ligase family URS_1676 PF02237 Biotin protein ligase C terminal domain URS_1677 PF01925 Sulfite exporter TauE/SafE URS_1679 PF02463 RecF/RecN/SMC N terminal domain URS_1679 PF06470 SMC proteins Flexible Hinge Domain URS_1681 PF00533 BRCA1 C Terminus (BRCT) domain URS_1681 PF03120 NAD-dependent DNA ligase OB-fold domain URS_1681 PF01653 NAD-dependent DNA ligase adenylation domain URS_1681 PF03119 NAD-dependent DNA ligase C4 zinc finger domain URS_1681 PF12826 Helix-hairpin-helix motif URS_1683 PF00210 Ferritin-like domain URS_1684 PF00578 AhpC/TSA family URS_1688 PF00202 Aminotransferase class-III URS_1688 PF04055 Radical SAM superfamily URS_1688 PF06968 Biotin and Thiamin Synthesis associated domain URS_1689 PF00155 Aminotransferase class I and II URS_1693 PF01479 S4 domain URS_1693 PF00849 RNA pseudouridylate synthase URS_1694 PF04079 Segregation and condensation complex subunit ScpB URS_1695 PF02616 Segregation and condensation protein ScpA URS_1697 PF01300 Telomere recombination URS_1698 PF04315 Elongation factor P hydroxylase URS_1699 PF02620 Large ribosomal RNA subunit accumulation protein YceD URS_1700 PF01783 Ribosomal L32p protein family URS_1701 PF00698 Acyl transferase domain URS_1703 PF00550 Phosphopantetheine attachment site URS_1704 PF01476 LysM domain URS_1704 PF04972 BON domain URS_1705 PF02525 Flavodoxin-like fold URS_1706 PF01638 HxlR-like helix-turn-helix URS_1707 PF03070 TENA/THI-4/PQQC family URS_1707 PF02581 Thiamine monophosphate synthase URS_1707 PF08543 Phosphomethylpyrimidine kinase URS_1708 PF13419 Haloacid dehalogenase-like hydrolase URS_1710 PF01757 Acyltransferase family URS_1712 PF00109 Beta-ketoacyl synthase, N-terminal domain URS_1712 PF02801 Beta-ketoacyl synthase, C-terminal domain URS_1714 PF00164 Ribosomal protein S12/S23 URS_1715 PF00177 Ribosomal protein S7p/S5e URS_1716 PF03144 Elongation factor Tu domain 2 URS_1716 PF00009 Elongation factor Tu GTP binding domain URS_1716 PF14492 Elongation Factor G, domain II URS_1716 PF03764 Elongation factor G, domain IV URS_1716 PF00679 Elongation factor G C-terminus URS_1717 PF00009 Elongation factor Tu GTP binding domain URS_1717 PF03144 Elongation factor Tu domain 2 URS_1717 PF03143 Elongation factor Tu C-terminal domain URS_1719 PF00583 Acetyltransferase (GNAT) family URS_1720 PF04376 Arginine-tRNA-protein transferase, N terminus URS_1720 PF04377 Arginine-tRNA-protein transferase, C terminus URS_1721 PF03588 Leucyl/phenylalanyl-tRNA protein transferase URS_1722 PF13847 Methyltransferase domain URS_1722 PF10119 Predicted methyltransferase regulatory domain URS_1723 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_1724 PF01580 FtsK/SpoIIIE family URS_1724 PF09397 Ftsk gamma domain URS_1724 PF17854 FtsK alpha domain URS_1724 PF13491 4TM region of DNA translocase FtsK/SpoIIIE URS_1725 PF03976 Polyphosphate kinase 2 (PPK2) URS_1726 PF01810 LysE type translocator URS_1728 PF03776 Septum formation topological specificity factor MinE URS_1729 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain URS_1730 PF03775 Septum formation inhibitor MinC, C-terminal domain URS_1732 PF01553 Acyltransferase URS_1733 PF13488 Glycine zipper URS_1733 PF00691 OmpA family URS_1734 PF13361 UvrD-like helicase C-terminal domain URS_1734 PF00580 UvrD/REP helicase N-terminal domain URS_1735 PF00692 dUTPase URS_1736 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III URS_1736 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain URS_1736 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I URS_1736 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II URS_1737 PF00696 Amino acid kinase family URS_1739 PF13230 Glutamine amidotransferases class-II URS_1740 PF01814 Hemerythrin HHE cation binding domain URS_1742 PF03658 RnfH family Ubiquitin URS_1743 PF04355 SmpA / OmlA family URS_1744 PF01475 Ferric uptake regulator family URS_1745 PF00437 Type II/IV secretion system protein URS_1746 PF00437 Type II/IV secretion system protein URS_1747 PF01168 Alanine racemase, N-terminal domain URS_1748 PF02673 Bacitracin resistance protein BacA URS_1749 PF13419 Haloacid dehalogenase-like hydrolase URS_1753 PF12320 Type 5 capsule protein repressor C-terminal domain URS_1753 PF00149 Calcineurin-like phosphoesterase URS_1756 PF01266 FAD dependent oxidoreductase URS_1757 PF00490 Delta-aminolevulinic acid dehydratase URS_1758 PF03061 Thioesterase superfamily URS_1759 PF00529 HlyD membrane-fusion protein of T1SS URS_1759 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion URS_1760 PF07690 Major Facilitator Superfamily URS_1761 PF00155 Aminotransferase class I and II URS_1761 PF00392 Bacterial regulatory proteins, gntR family URS_1768 PF00982 Glycosyltransferase family 20 URS_1769 PF07690 Major Facilitator Superfamily URS_1771 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain URS_1771 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase URS_1772 PF00375 Sodium:dicarboxylate symporter family URS_1774 PF03737 Aldolase/RraA URS_1775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1775 PF03466 LysR substrate binding domain URS_1776 PF06276 Ferric iron reductase FhuF-like transporter URS_1776 PF04183 IucA / IucC family URS_1777 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) URS_1778 PF04183 IucA / IucC family URS_1778 PF06276 Ferric iron reductase FhuF-like transporter URS_1781 PF07690 Major Facilitator Superfamily URS_1782 PF07715 TonB-dependent Receptor Plug Domain URS_1782 PF00593 TonB dependent receptor URS_1783 PF02321 Outer membrane efflux protein URS_1784 PF02687 FtsX-like permease family URS_1784 PF12704 MacB-like periplasmic core domain URS_1784 PF00005 ABC transporter URS_1785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion URS_1788 PF13603 Leucyl-tRNA synthetase, Domain 2 URS_1788 PF09334 tRNA synthetases class I (M) URS_1788 PF00133 tRNA synthetases class I (I, L, M and V) URS_1788 PF08264 Anticodon-binding domain of tRNA URS_1791 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain URS_1791 PF00205 Thiamine pyrophosphate enzyme, central domain URS_1791 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain URS_1792 PF10369 Small subunit of acetolactate synthase URS_1793 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain URS_1793 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain URS_1794 PF03707 Bacterial signalling protein N terminal repeat URS_1794 PF00990 Diguanylate cyclase, GGDEF domain URS_1794 PF00563 EAL domain URS_1798 PF13276 HTH-like domain URS_1798 PF00665 Integrase core domain URS_1798 PF13333 Integrase core domain URS_1801 PF00665 Integrase core domain URS_1801 PF13276 HTH-like domain URS_1801 PF13333 Integrase core domain URS_1802 PF01527 Transposase URS_1809 PF01389 OmpA-like transmembrane domain URS_1809 PF00691 OmpA family URS_1828 PF12161 HsdM N-terminal domain URS_1828 PF02384 N-6 DNA Methylase URS_1830 PF18766 SWI2/SNF2 ATPase URS_1830 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) URS_1830 PF12008 Type I restriction and modification enzyme - subunit R C terminal URS_1831 PF02661 Fic/DOC family URS_1831 PF13784 Fic/DOC family N-terminal URS_1833 PF01695 IstB-like ATP binding protein URS_1834 PF02796 Helix-turn-helix domain of resolvase URS_1834 PF00665 Integrase core domain URS_1838 PF00009 Elongation factor Tu GTP binding domain URS_1838 PF16658 Class II release factor RF3, C-terminal domain URS_1838 PF03144 Elongation factor Tu domain 2 URS_1841 PF01026 TatD related DNase URS_1842 PF00330 Aconitase family (aconitate hydratase) URS_1842 PF00694 Aconitase C-terminal domain URS_1843 PF00899 ThiF family URS_1846 PF02782 FGGY family of carbohydrate kinases, C-terminal domain URS_1846 PF00370 FGGY family of carbohydrate kinases, N-terminal domain URS_1847 PF01207 Dihydrouridine synthase (Dus) URS_1852 PF00175 Oxidoreductase NAD-binding domain URS_1852 PF00111 2Fe-2S iron-sulfur cluster binding domain URS_1853 PF00355 Rieske [2Fe-2S] domain URS_1854 PF07690 Major Facilitator Superfamily URS_1855 PF07690 Major Facilitator Superfamily URS_1856 PF03573 outer membrane porin, OprD family URS_1857 PF09339 IclR helix-turn-helix domain URS_1857 PF01614 Bacterial transcriptional regulator URS_1858 PF00355 Rieske [2Fe-2S] domain URS_1860 PF00355 Rieske [2Fe-2S] domain URS_1863 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_1863 PF14759 Reductase C-terminal URS_1864 PF07690 Major Facilitator Superfamily URS_1866 PF12697 Alpha/beta hydrolase family URS_1868 PF01958 Domain of unknown function DUF108 URS_1868 PF03447 Homoserine dehydrogenase, NAD binding domain URS_1869 PF00171 Aldehyde dehydrogenase family URS_1870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain URS_1870 PF00205 Thiamine pyrophosphate enzyme, central domain URS_1870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain URS_1873 PF00005 ABC transporter URS_1876 PF00593 TonB dependent receptor URS_1876 PF07715 TonB-dependent Receptor Plug Domain URS_1879 PF05199 GMC oxidoreductase URS_1879 PF00732 GMC oxidoreductase URS_1880 PF00171 Aldehyde dehydrogenase family URS_1881 PF00440 Bacterial regulatory proteins, tetR family URS_1881 PF13977 BetI-type transcriptional repressor, C-terminal URS_1882 PF02028 BCCT, betaine/carnitine/choline family transporter URS_1884 PF03061 Thioesterase superfamily URS_1885 PF00285 Citrate synthase, C-terminal domain URS_1886 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit URS_1887 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit URS_1888 PF00890 FAD binding domain URS_1888 PF02910 Fumarate reductase flavoprotein C-term URS_1889 PF13085 2Fe-2S iron-sulfur cluster binding domain URS_1890 PF16078 2-oxoglutarate dehydrogenase N-terminus URS_1890 PF00676 Dehydrogenase E1 component URS_1890 PF16870 2-oxoglutarate dehydrogenase C-terminal URS_1890 PF02779 Transketolase, pyrimidine binding domain URS_1891 PF00364 Biotin-requiring enzyme URS_1891 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) URS_1891 PF02817 e3 binding domain URS_1892 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain URS_1892 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_1893 PF00549 CoA-ligase URS_1893 PF08442 ATP-grasp domain URS_1894 PF02629 CoA binding domain URS_1894 PF00549 CoA-ligase URS_1896 PF14883 Hypothetical glycosyl hydrolase family 13 URS_1896 PF01522 Polysaccharide deacetylase URS_1897 PF00535 Glycosyl transferase family 2 URS_1900 PF15975 Flotillin URS_1900 PF01145 SPFH domain / Band 7 family URS_1901 PF07290 Protein of unknown function (DUF1449) URS_1902 PF00579 tRNA synthetases class I (W and Y) URS_1903 PF05661 Protein of unknown function (DUF808) URS_1904 PF04228 Putative neutral zinc metallopeptidase URS_1905 PF13520 Amino acid permease URS_1906 PF00465 Iron-containing alcohol dehydrogenase URS_1908 PF03099 Biotin/lipoate A/B protein ligase family URS_1909 PF04359 Protein of unknown function (DUF493) URS_1910 PF04546 Sigma-70, non-essential region URS_1910 PF03979 Sigma-70 factor, region 1.1 URS_1910 PF00140 Sigma-70 factor, region 1.2 URS_1910 PF04542 Sigma-70 region 2 URS_1910 PF04539 Sigma-70 region 3 URS_1910 PF04545 Sigma-70, region 4 URS_1913 PF05724 Thiopurine S-methyltransferase (TPMT) URS_1914 PF09335 SNARE associated Golgi protein URS_1919 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase URS_1920 PF02261 Aspartate decarboxylase URS_1921 PF01195 Peptidyl-tRNA hydrolase URS_1922 PF01386 Ribosomal L25p family URS_1923 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase URS_1923 PF14572 Phosphoribosyl synthetase-associated domain URS_1928 PF00288 GHMP kinases N terminal domain URS_1928 PF08544 GHMP kinases C terminal URS_1929 PF03550 Outer membrane lipoprotein LolB URS_1931 PF01488 Shikimate / quinate 5-dehydrogenase URS_1931 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain URS_1931 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain URS_1932 PF01807 CHC2 zinc finger URS_1932 PF08275 DNA primase catalytic core, N-terminal domain URS_1932 PF08278 DNA primase DnaG DnaB-binding URS_1932 PF10410 DnaB-helicase binding domain of primase URS_1933 PF13525 Outer membrane lipoprotein URS_1934 PF00849 RNA pseudouridylate synthase URS_1934 PF01479 S4 domain URS_1936 PF03358 NADPH-dependent FMN reductase URS_1937 PF01668 SmpB protein URS_1938 PF01467 Cytidylyltransferase-like URS_1939 PF12838 4Fe-4S dicluster domain URS_1941 PF07715 TonB-dependent Receptor Plug Domain URS_1941 PF00593 TonB dependent receptor URS_1943 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain URS_1943 PF07685 CobB/CobQ-like glutamine amidotransferase domain URS_1944 PF01507 Phosphoadenosine phosphosulfate reductase family URS_1945 PF00009 Elongation factor Tu GTP binding domain URS_1946 PF03600 Citrate transporter URS_1951 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain URS_1951 PF00289 Biotin carboxylase, N-terminal domain URS_1951 PF02785 Biotin carboxylase C-terminal domain URS_1952 PF08753 NikR C terminal nickel binding domain URS_1952 PF01402 Ribbon-helix-helix protein, copG family URS_1953 PF01425 Amidase URS_1954 PF00497 Bacterial extracellular solute-binding proteins, family 3 URS_1955 PF00893 Small Multidrug Resistance protein URS_1958 PF00005 ABC transporter URS_1960 PF00571 CBS domain URS_1960 PF01595 Cyclin M transmembrane N-terminal domain URS_1960 PF03471 Transporter associated domain URS_1961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_1961 PF03466 LysR substrate binding domain URS_1962 PF00463 Isocitrate lyase family URS_1963 PF03060 Nitronate monooxygenase URS_1964 PF04170 NlpE N-terminal domain URS_1964 PF17185 NlpE C-terminal OB domain URS_1967 PF01774 UreD urease accessory protein URS_1968 PF00547 Urease, gamma subunit URS_1969 PF00699 Urease beta subunit URS_1970 PF01979 Amidohydrolase family URS_1970 PF00449 Urease alpha-subunit, N-terminal domain URS_1971 PF05194 UreE urease accessory protein, C-terminal domain URS_1971 PF02814 UreE urease accessory protein, N-terminal domain URS_1972 PF01730 UreF URS_1973 PF02492 CobW/HypB/UreG, nucleotide-binding domain URS_1979 PF03717 Penicillin-binding Protein dimerisation domain URS_1979 PF00905 Penicillin binding protein transpeptidase domain URS_1982 PF05191 Adenylate kinase, active site lid URS_1984 PF10576 Iron-sulfur binding domain of endonuclease III URS_1984 PF00633 Helix-hairpin-helix motif URS_1984 PF00730 HhH-GPD superfamily base excision DNA repair protein URS_1985 PF04060 Putative Fe-S cluster URS_1986 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain URS_1986 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase URS_1988 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase URS_1989 PF02590 Predicted SPOUT methyltransferase URS_1990 PF02190 ATP-dependent protease La (LON) substrate-binding domain URS_1990 PF05362 Lon protease (S16) C-terminal proteolytic domain URS_1990 PF00004 ATPase family associated with various cellular activities (AAA) URS_1991 PF01812 5-formyltetrahydrofolate cyclo-ligase family URS_1993 PF05658 Head domain of trimeric autotransporter adhesin URS_1993 PF03895 YadA-like membrane anchor domain URS_1993 PF05662 Coiled stalk of trimeric autotransporter adhesin URS_1993 PF13018 Extended Signal Peptide of Type V secretion system URS_1994 PF00691 OmpA family URS_1994 PF01389 OmpA-like transmembrane domain URS_1997 PF13533 Biotin-lipoyl like URS_1999 PF00266 Aminotransferase class-V URS_2002 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 URS_2005 PF12704 MacB-like periplasmic core domain URS_2005 PF02687 FtsX-like permease family URS_2006 PF00005 ABC transporter URS_2008 PF13567 Domain of unknown function (DUF4131) URS_2008 PF03772 Competence protein URS_2008 PF00753 Metallo-beta-lactamase superfamily URS_2010 PF06965 Na+/H+ antiporter 1 URS_2010 PF01343 Peptidase family S49 URS_2012 PF00324 Amino acid permease URS_2013 PF04303 PrpF protein URS_2015 PF00348 Polyprenyl synthetase URS_2016 PF01145 SPFH domain / Band 7 family URS_2018 PF01734 Patatin-like phospholipase URS_2021 PF07690 Major Facilitator Superfamily URS_2022 PF00486 Transcriptional regulatory protein, C terminal URS_2022 PF00072 Response regulator receiver domain URS_2023 PF00512 His Kinase A (phospho-acceptor) domain URS_2023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_2023 PF08521 Two-component sensor kinase N-terminal URS_2025 PF00909 Ammonium Transporter Family URS_2029 PF10458 Valyl tRNA synthetase tRNA binding arm URS_2029 PF00133 tRNA synthetases class I (I, L, M and V) URS_2029 PF08264 Anticodon-binding domain of tRNA URS_2032 PF01906 Putative heavy-metal-binding URS_2033 PF01906 Putative heavy-metal-binding URS_2034 PF02321 Outer membrane efflux protein URS_2035 PF00873 AcrB/AcrD/AcrF family URS_2036 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion URS_2036 PF00529 HlyD membrane-fusion protein of T1SS URS_2037 PF01569 PAP2 superfamily URS_2039 PF00348 Polyprenyl synthetase URS_2040 PF00829 Ribosomal prokaryotic L21 protein URS_2041 PF01016 Ribosomal L27 protein URS_2042 PF05726 Pirin C-terminal cupin domain URS_2042 PF02678 Pirin URS_2043 PF03548 Outer membrane lipoprotein carrier protein LolA URS_2045 PF02403 Seryl-tRNA synthetase N-terminal domain URS_2045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) URS_2046 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases URS_2046 PF10414 Sirohaem synthase dimerisation region URS_2046 PF14824 Sirohaem biosynthesis protein central URS_2047 PF00588 SpoU rRNA Methylase family URS_2049 PF01638 HxlR-like helix-turn-helix URS_2050 PF03358 NADPH-dependent FMN reductase URS_2052 PF00999 Sodium/hydrogen exchanger family URS_2060 PF03466 LysR substrate binding domain URS_2060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2061 PF00561 alpha/beta hydrolase fold URS_2062 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_2062 PF18113 Rubredoxin binding C-terminal domain URS_2063 PF00301 Rubredoxin URS_2065 PF00156 Phosphoribosyl transferase domain URS_2067 PF00152 tRNA synthetases class II (D, K and N) URS_2067 PF01336 OB-fold nucleic acid binding domain URS_2068 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain URS_2068 PF02777 Iron/manganese superoxide dismutases, C-terminal domain URS_2072 PF00795 Carbon-nitrogen hydrolase URS_2072 PF02540 NAD synthase URS_2075 PF02492 CobW/HypB/UreG, nucleotide-binding domain URS_2075 PF07683 Cobalamin synthesis protein cobW C-terminal domain URS_2076 PF00375 Sodium:dicarboxylate symporter family URS_2077 PF07152 YaeQ protein URS_2078 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase URS_2081 PF01522 Polysaccharide deacetylase URS_2081 PF14883 Hypothetical glycosyl hydrolase family 13 URS_2082 PF00535 Glycosyl transferase family 2 URS_2086 PF04973 Nicotinamide mononucleotide transporter URS_2088 PF02230 Phospholipase/Carboxylesterase URS_2089 PF00083 Sugar (and other) transporter URS_2092 PF01327 Polypeptide deformylase URS_2093 PF04960 Glutaminase URS_2095 PF07690 Major Facilitator Superfamily URS_2098 PF13340 Putative transposase of IS4/5 family (DUF4096) URS_2100 PF04480 Protein of unknown function (DUF559) URS_2102 PF07516 SecA Wing and Scaffold domain URS_2102 PF01043 SecA preprotein cross-linking domain URS_2102 PF07517 SecA DEAD-like domain URS_2102 PF02810 SEC-C motif URS_2103 PF02607 B12 binding domain URS_2103 PF02574 Homocysteine S-methyltransferase URS_2103 PF00809 Pterin binding enzyme URS_2103 PF02965 Vitamin B12 dependent methionine synthase, activation domain URS_2103 PF02310 B12 binding domain URS_2104 PF01384 Phosphate transporter family URS_2105 PF00291 Pyridoxal-phosphate dependent enzyme URS_2108 PF03781 Sulfatase-modifying factor enzyme 1 URS_2109 PF00884 Sulfatase URS_2111 PF01521 Iron-sulphur cluster biosynthesis URS_2111 PF01106 NifU-like domain URS_2112 PF07715 TonB-dependent Receptor Plug Domain URS_2112 PF00593 TonB dependent receptor URS_2113 PF07715 TonB-dependent Receptor Plug Domain URS_2113 PF00593 TonB dependent receptor URS_2115 PF12697 Alpha/beta hydrolase family URS_2116 PF00484 Carbonic anhydrase URS_2117 PF13472 GDSL-like Lipase/Acylhydrolase family URS_2118 PF00005 ABC transporter URS_2120 PF01694 Rhomboid family URS_2121 PF00912 Transglycosylase URS_2122 PF13089 Polyphosphate kinase N-terminal domain URS_2122 PF13090 Polyphosphate kinase C-terminal domain 2 URS_2122 PF02503 Polyphosphate kinase middle domain URS_2122 PF17941 Polyphosphate kinase C-terminal domain 1 URS_2123 PF00582 Universal stress protein family URS_2125 PF00582 Universal stress protein family URS_2127 PF01272 Transcription elongation factor, GreA/GreB, C-term URS_2127 PF03449 Transcription elongation factor, N-terminal URS_2128 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain URS_2128 PF02142 MGS-like domain URS_2128 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain URS_2129 PF00117 Glutamine amidotransferase class-I URS_2129 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain URS_2132 PF01985 CRS1 / YhbY (CRM) domain URS_2133 PF01728 FtsJ-like methyltransferase URS_2134 PF06480 FtsH Extracellular URS_2134 PF00004 ATPase family associated with various cellular activities (AAA) URS_2134 PF17862 AAA+ lid domain URS_2134 PF01434 Peptidase family M41 URS_2135 PF00809 Pterin binding enzyme URS_2140 PF02595 Glycerate kinase family URS_2143 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain URS_2143 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain URS_2146 PF16901 C-terminal domain of alpha-glycerophosphate oxidase URS_2146 PF01266 FAD dependent oxidoreductase URS_2148 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain URS_2148 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain URS_2149 PF00781 Diacylglycerol kinase catalytic domain URS_2152 PF00166 Chaperonin 10 Kd subunit URS_2153 PF00118 TCP-1/cpn60 chaperonin family URS_2154 PF00266 Aminotransferase class-V URS_2156 PF00132 Bacterial transferase hexapeptide (six repeats) URS_2157 PF00581 Rhodanese-like domain URS_2159 PF02910 Fumarate reductase flavoprotein C-term URS_2159 PF00890 FAD binding domain URS_2163 PF01219 Prokaryotic diacylglycerol kinase URS_2165 PF00873 AcrB/AcrD/AcrF family URS_2166 PF01769 Divalent cation transporter URS_2166 PF03448 MgtE intracellular N domain URS_2166 PF00571 CBS domain URS_2168 PF01435 Peptidase family M48 URS_2169 PF10145 Phage-related minor tail protein URS_2169 PF01464 Transglycosylase SLT domain URS_2169 PF01551 Peptidase family M23 URS_2170 PF01171 PP-loop family URS_2172 PF00497 Bacterial extracellular solute-binding proteins, family 3 URS_2172 PF01464 Transglycosylase SLT domain URS_2173 PF03449 Transcription elongation factor, N-terminal URS_2173 PF01272 Transcription elongation factor, GreA/GreB, C-term URS_2174 PF00355 Rieske [2Fe-2S] domain URS_2175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2175 PF03466 LysR substrate binding domain URS_2177 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion URS_2178 PF00005 ABC transporter URS_2182 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2182 PF03466 LysR substrate binding domain URS_2183 PF00180 Isocitrate/isopropylmalate dehydrogenase URS_2184 PF02028 BCCT, betaine/carnitine/choline family transporter URS_2185 PF07859 alpha/beta hydrolase fold URS_2186 PF00848 Ring hydroxylating alpha subunit (catalytic domain) URS_2186 PF00355 Rieske [2Fe-2S] domain URS_2187 PF00171 Aldehyde dehydrogenase family URS_2188 PF00111 2Fe-2S iron-sulfur cluster binding domain URS_2188 PF00970 Oxidoreductase FAD-binding domain URS_2188 PF00175 Oxidoreductase NAD-binding domain URS_2190 PF02254 TrkA-N domain URS_2190 PF00999 Sodium/hydrogen exchanger family URS_2191 PF01867 CRISPR associated protein Cas1 URS_2193 PF09611 CRISPR-associated protein (Cas_Csy1) URS_2195 PF09615 CRISPR-associated protein (Cas_Csy3) URS_2196 PF00665 Integrase core domain URS_2196 PF13936 Helix-turn-helix domain URS_2235 PF04851 Type III restriction enzyme, res subunit URS_2236 PF01555 DNA methylase URS_2242 PF13737 Transposase DDE domain URS_2249 PF02678 Pirin URS_2249 PF17954 Quercetinase C-terminal cupin domain URS_2251 PF01208 Uroporphyrinogen decarboxylase (URO-D) URS_2252 PF05675 Protein of unknown function (DUF817) URS_2253 PF07690 Major Facilitator Superfamily URS_2254 PF09335 SNARE associated Golgi protein URS_2256 PF00111 2Fe-2S iron-sulfur cluster binding domain URS_2256 PF01799 [2Fe-2S] binding domain URS_2257 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain URS_2257 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase URS_2258 PF02625 XdhC and CoxI family URS_2258 PF13478 XdhC Rossmann domain URS_2260 PF00665 Integrase core domain URS_2260 PF13936 Helix-turn-helix domain URS_2262 PF00218 Indole-3-glycerol phosphate synthase URS_2263 PF02885 Glycosyl transferase family, helical bundle domain URS_2263 PF00591 Glycosyl transferase family, a/b domain URS_2264 PF00117 Glutamine amidotransferase class-I URS_2265 PF02777 Iron/manganese superoxide dismutases, C-terminal domain URS_2265 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain URS_2266 PF01784 NIF3 (NGG1p interacting factor 3) URS_2267 PF13180 PDZ domain URS_2268 PF05362 Lon protease (S16) C-terminal proteolytic domain URS_2268 PF13654 AAA domain URS_2269 PF07690 Major Facilitator Superfamily URS_2270 PF13593 SBF-like CPA transporter family (DUF4137) URS_2271 PF01197 Ribosomal protein L31 URS_2272 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2272 PF03466 LysR substrate binding domain URS_2273 PF00005 ABC transporter URS_2273 PF12857 TOBE-like domain URS_2274 PF00528 Binding-protein-dependent transport system inner membrane component URS_2275 PF00528 Binding-protein-dependent transport system inner membrane component URS_2278 PF01063 Amino-transferase class IV URS_2279 PF02618 YceG-like family URS_2280 PF02223 Thymidylate kinase URS_2281 PF02910 Fumarate reductase flavoprotein C-term URS_2281 PF00890 FAD binding domain URS_2282 PF13180 PDZ domain URS_2283 PF00120 Glutamine synthetase, catalytic domain URS_2285 PF00679 Elongation factor G C-terminus URS_2285 PF03144 Elongation factor Tu domain 2 URS_2285 PF06421 GTP-binding protein LepA C-terminus URS_2285 PF00009 Elongation factor Tu GTP binding domain URS_2286 PF10502 Signal peptidase, peptidase S26 URS_2288 PF00035 Double-stranded RNA binding motif URS_2288 PF14622 Ribonuclease-III-like URS_2289 PF01926 50S ribosome-binding GTPase URS_2289 PF07650 KH domain URS_2291 PF11967 Recombination protein O N terminal URS_2291 PF02565 Recombination protein O C terminal URS_2292 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ URS_2293 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) URS_2295 PF04345 Chorismate lyase URS_2296 PF01040 UbiA prenyltransferase family URS_2298 PF00375 Sodium:dicarboxylate symporter family URS_2302 PF00464 Serine hydroxymethyltransferase URS_2303 PF14760 Rnk N-terminus URS_2303 PF01272 Transcription elongation factor, GreA/GreB, C-term URS_2305 PF05816 Toxic anion resistance protein (TelA) URS_2307 PF13192 Thioredoxin domain URS_2307 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_2308 PF12838 4Fe-4S dicluster domain URS_2310 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase URS_2311 PF00857 Isochorismatase family URS_2313 PF00970 Oxidoreductase FAD-binding domain URS_2313 PF00175 Oxidoreductase NAD-binding domain URS_2314 PF01980 tRNA-methyltransferase O URS_2314 PF18389 TrmO C-terminal domain URS_2315 PF00990 Diguanylate cyclase, GGDEF domain URS_2315 PF07694 5TMR of 5TMR-LYT URS_2316 PF00437 Type II/IV secretion system protein URS_2316 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain URS_2317 PF04076 Bacterial OB fold (BOF) protein URS_2318 PF00072 Response regulator receiver domain URS_2318 PF00486 Transcriptional regulatory protein, C terminal URS_2319 PF00512 His Kinase A (phospho-acceptor) domain URS_2319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_2319 PF08521 Two-component sensor kinase N-terminal URS_2321 PF00293 NUDIX domain URS_2323 PF00912 Transglycosylase URS_2323 PF00905 Penicillin binding protein transpeptidase domain URS_2323 PF14814 Bifunctional transglycosylase second domain URS_2324 PF01513 ATP-NAD kinase URS_2325 PF07023 Protein of unknown function (DUF1315) URS_2326 PF00591 Glycosyl transferase family, a/b domain URS_2326 PF02885 Glycosyl transferase family, helical bundle domain URS_2327 PF00375 Sodium:dicarboxylate symporter family URS_2328 PF00593 TonB dependent receptor URS_2328 PF07715 TonB-dependent Receptor Plug Domain URS_2329 PF01740 STAS domain URS_2329 PF00916 Sulfate permease family URS_2331 PF00860 Permease family URS_2332 PF00962 Adenosine/AMP deaminase URS_2335 PF01351 Ribonuclease HII URS_2336 PF02599 Global regulator protein family URS_2337 PF13840 ACT domain URS_2337 PF01842 ACT domain URS_2337 PF00696 Amino acid kinase family URS_2338 PF02272 DHHA1 domain URS_2338 PF01411 tRNA synthetases class II (A) URS_2338 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain URS_2339 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain URS_2339 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain URS_2341 PF13393 Histidyl-tRNA synthetase URS_2342 PF00709 Adenylosuccinate synthetase URS_2345 PF00248 Aldo/keto reductase family URS_2346 PF00027 Cyclic nucleotide-binding domain URS_2346 PF13545 Crp-like helix-turn-helix domain URS_2347 PF02566 OsmC-like protein URS_2349 PF01551 Peptidase family M23 URS_2349 PF08460 Bacterial SH3 domain URS_2351 PF07724 AAA domain (Cdc48 subfamily) URS_2351 PF17871 AAA lid domain URS_2351 PF02861 Clp amino terminal domain, pathogenicity island component URS_2351 PF10431 C-terminal, D2-small domain, of ClpB protein URS_2351 PF00004 ATPase family associated with various cellular activities (AAA) URS_2353 PF02926 THUMP domain URS_2353 PF10672 S-adenosylmethionine-dependent methyltransferase URS_2353 PF01170 Putative RNA methylase family UPF0020 URS_2354 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain URS_2354 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain URS_2355 PF01979 Amidohydrolase family URS_2360 PF04403 Paraquat-inducible protein A URS_2361 PF02470 MlaD protein URS_2363 PF02769 AIR synthase related protein, C-terminal domain URS_2363 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal URS_2363 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain URS_2366 PF01784 NIF3 (NGG1p interacting factor 3) URS_2368 PF00378 Enoyl-CoA hydratase/isomerase URS_2369 PF00293 NUDIX domain URS_2369 PF01467 Cytidylyltransferase-like URS_2370 PF04264 YceI-like domain URS_2371 PF00578 AhpC/TSA family URS_2373 PF06508 Queuosine biosynthesis protein QueC URS_2374 PF04055 Radical SAM superfamily URS_2375 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal URS_2375 PF14602 Hexapeptide repeat of succinyl-transferase URS_2375 PF00132 Bacterial transferase hexapeptide (six repeats) URS_2377 PF00196 Bacterial regulatory proteins, luxR family URS_2377 PF00563 EAL domain URS_2379 PF04055 Radical SAM superfamily URS_2380 PF08207 Elongation factor P (EF-P) KOW-like domain URS_2380 PF01132 Elongation factor P (EF-P) OB domain URS_2380 PF09285 Elongation factor P, C-terminal URS_2382 PF02554 Carbon starvation protein CstA URS_2382 PF13722 5TM C-terminal transporter carbon starvation CstA URS_2383 PF04328 Selenoprotein, putative URS_2384 PF07726 ATPase family associated with various cellular activities (AAA) URS_2384 PF17863 AAA lid domain URS_2386 PF09084 NMT1/THI5 like URS_2387 PF00005 ABC transporter URS_2388 PF00528 Binding-protein-dependent transport system inner membrane component URS_2389 PF01979 Amidohydrolase family URS_2390 PF12697 Alpha/beta hydrolase family URS_2391 PF02677 Epoxyqueuosine reductase QueH URS_2396 PF00990 Diguanylate cyclase, GGDEF domain URS_2400 PF00132 Bacterial transferase hexapeptide (six repeats) URS_2401 PF00588 SpoU rRNA Methylase family URS_2402 PF14579 Helix-hairpin-helix motif URS_2402 PF17657 Bacterial DNA polymerase III alpha subunit finger domain URS_2402 PF07733 Bacterial DNA polymerase III alpha NTPase domain URS_2402 PF01336 OB-fold nucleic acid binding domain URS_2402 PF02811 PHP domain URS_2403 PF17763 Glutaminase/Asparaginase C-terminal domain URS_2403 PF00710 Asparaginase, N-terminal URS_2404 PF00155 Aminotransferase class I and II URS_2405 PF01641 SelR domain URS_2406 PF00255 Glutathione peroxidase URS_2407 PF12852 Cupin URS_2407 PF12833 Helix-turn-helix domain URS_2410 PF07715 TonB-dependent Receptor Plug Domain URS_2410 PF00593 TonB dependent receptor URS_2411 PF00155 Aminotransferase class I and II URS_2412 PF08335 GlnD PII-uridylyltransferase URS_2412 PF01966 HD domain URS_2412 PF01909 Nucleotidyltransferase domain URS_2413 PF02222 ATP-grasp domain URS_2418 PF02777 Iron/manganese superoxide dismutases, C-terminal domain URS_2418 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain URS_2419 PF01926 50S ribosome-binding GTPase URS_2419 PF06071 Protein of unknown function (DUF933) URS_2420 PF00528 Binding-protein-dependent transport system inner membrane component URS_2421 PF00005 ABC transporter URS_2421 PF09383 NIL domain URS_2422 PF03180 NLPA lipoprotein URS_2423 PF00296 Luciferase-like monooxygenase URS_2425 PF08028 Acyl-CoA dehydrogenase, C-terminal domain URS_2425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_2428 PF00665 Integrase core domain URS_2428 PF13936 Helix-turn-helix domain URS_2429 PF00171 Aldehyde dehydrogenase family URS_2430 PF00939 Sodium:sulfate symporter transmembrane region URS_2431 PF00520 Ion transport protein URS_2431 PF00027 Cyclic nucleotide-binding domain URS_2432 PF07690 Major Facilitator Superfamily URS_2435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2435 PF03466 LysR substrate binding domain URS_2436 PF03707 Bacterial signalling protein N terminal repeat URS_2436 PF00563 EAL domain URS_2436 PF00990 Diguanylate cyclase, GGDEF domain URS_2437 PF04284 Protein of unknown function (DUF441) URS_2439 PF01975 Survival protein SurE URS_2444 PF00665 Integrase core domain URS_2444 PF13936 Helix-turn-helix domain URS_2445 PF01479 S4 domain URS_2445 PF00849 RNA pseudouridylate synthase URS_2448 PF01479 S4 domain URS_2448 PF00849 RNA pseudouridylate synthase URS_2449 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE URS_2450 PF08676 MutL C terminal dimerisation domain URS_2450 PF01119 DNA mismatch repair protein, C-terminal domain URS_2452 PF17209 Hfq protein URS_2453 PF09312 SurA N-terminal domain URS_2453 PF00639 PPIC-type PPIASE domain URS_2454 PF03968 OstA-like protein URS_2454 PF04453 LPS transport system D URS_2455 PF01636 Phosphotransferase enzyme family URS_2456 PF00483 Nucleotidyl transferase URS_2457 PF02527 rRNA small subunit methyltransferase G URS_2458 PF13614 AAA domain URS_2459 PF17762 HTH domain found in ParB protein URS_2459 PF02195 ParB-like nuclease domain URS_2460 PF01618 MotA/TolQ/ExbB proton channel family URS_2462 PF00005 ABC transporter URS_2462 PF00664 ABC transporter transmembrane region URS_2463 PF02606 Tetraacyldisaccharide-1-P 4'-kinase URS_2464 PF02348 Cytidylyltransferase URS_2465 PF09115 DNA polymerase III, delta subunit, C terminal URS_2467 PF01026 TatD related DNase URS_2471 PF07963 Prokaryotic N-terminal methylation motif URS_2471 PF11612 Type II secretion system (T2SS), protein J URS_2472 PF03934 Type II secretion system (T2SS), protein K URS_2474 PF03167 Uracil DNA glycosylase superfamily URS_2476 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region URS_2478 PF02224 Cytidylate kinase URS_2479 PF00575 S1 RNA binding domain URS_2480 PF00216 Bacterial DNA-binding protein URS_2483 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family URS_2485 PF00743 Flavin-binding monooxygenase-like URS_2487 PF03969 AFG1-like ATPase URS_2488 PF01274 Malate synthase URS_2491 PF03741 Integral membrane protein TerC family URS_2491 PF03471 Transporter associated domain URS_2492 PF01266 FAD dependent oxidoreductase URS_2494 PF02542 YgbB family URS_2496 PF00793 DAHP synthetase I family URS_2497 PF01925 Sulfite exporter TauE/SafE URS_2501 PF07715 TonB-dependent Receptor Plug Domain URS_2501 PF00593 TonB dependent receptor URS_2502 PF02684 Lipid-A-disaccharide synthetase URS_2509 PF00069 Protein kinase domain URS_2509 PF03793 PASTA domain URS_2514 PF16123 Hydroxyacylglutathione hydrolase C-terminus URS_2514 PF00753 Metallo-beta-lactamase superfamily URS_2517 PF00528 Binding-protein-dependent transport system inner membrane component URS_2518 PF00005 ABC transporter URS_2518 PF09383 NIL domain URS_2519 PF03180 NLPA lipoprotein URS_2520 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain URS_2520 PF02844 Phosphoribosylglycinamide synthetase, N domain URS_2520 PF02843 Phosphoribosylglycinamide synthetase, C domain URS_2521 PF01808 AICARFT/IMPCHase bienzyme URS_2521 PF02142 MGS-like domain URS_2522 PF02954 Bacterial regulatory protein, Fis family URS_2527 PF13932 GidA associated domain URS_2527 PF01134 Glucose inhibited division protein A URS_2530 PF14403 Circularly permuted ATP-grasp type 2 URS_2532 PF01841 Transglutaminase-like superfamily URS_2532 PF08379 Bacterial transglutaminase-like N-terminal region URS_2535 PF01168 Alanine racemase, N-terminal domain URS_2535 PF00842 Alanine racemase, C-terminal domain URS_2536 PF00772 DnaB-like helicase N terminal domain URS_2536 PF03796 DnaB-like helicase C terminal domain URS_2538 PF00571 CBS domain URS_2538 PF01380 SIS domain URS_2544 PF02881 SRP54-type protein, helical bundle domain URS_2544 PF00448 SRP54-type protein, GTPase domain URS_2549 PF02322 Cytochrome bd terminal oxidase subunit II URS_2550 PF01654 Cytochrome bd terminal oxidase subunit I URS_2551 PF07290 Protein of unknown function (DUF1449) URS_2553 PF00294 pfkB family carbohydrate kinase URS_2554 PF00675 Insulinase (Peptidase family M16) URS_2554 PF08367 Peptidase M16C associated URS_2554 PF05193 Peptidase M16 inactive domain URS_2555 PF02253 Phospholipase A1 URS_2556 PF02386 Cation transport protein URS_2557 PF02254 TrkA-N domain URS_2557 PF02080 TrkA-C domain URS_2558 PF00291 Pyridoxal-phosphate dependent enzyme URS_2558 PF00585 C-terminal regulatory domain of Threonine dehydratase URS_2559 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) URS_2562 PF01118 Semialdehyde dehydrogenase, NAD binding domain URS_2562 PF02774 Semialdehyde dehydrogenase, dimerisation domain URS_2564 PF02617 ATP-dependent Clp protease adaptor protein ClpS URS_2565 PF10431 C-terminal, D2-small domain, of ClpB protein URS_2565 PF07724 AAA domain (Cdc48 subfamily) URS_2565 PF17871 AAA lid domain URS_2565 PF00004 ATPase family associated with various cellular activities (AAA) URS_2565 PF02861 Clp amino terminal domain, pathogenicity island component URS_2566 PF02694 Uncharacterised BCR, YnfA/UPF0060 family URS_2567 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain URS_2567 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain URS_2568 PF00440 Bacterial regulatory proteins, tetR family URS_2570 PF00528 Binding-protein-dependent transport system inner membrane component URS_2571 PF00528 Binding-protein-dependent transport system inner membrane component URS_2572 PF00005 ABC transporter URS_2575 PF01709 Transcriptional regulator URS_2578 PF07715 TonB-dependent Receptor Plug Domain URS_2578 PF00593 TonB dependent receptor URS_2579 PF00210 Ferritin-like domain URS_2585 PF00665 Integrase core domain URS_2585 PF02796 Helix-turn-helix domain of resolvase URS_2586 PF01695 IstB-like ATP binding protein URS_2598 PF06968 Biotin and Thiamin Synthesis associated domain URS_2598 PF04055 Radical SAM superfamily URS_2599 PF08331 Domain of unknown function (DUF1730) URS_2600 PF03853 YjeF-related protein N-terminus URS_2600 PF01256 Carbohydrate kinase URS_2601 PF02075 Crossover junction endodeoxyribonuclease RuvC URS_2603 PF00296 Luciferase-like monooxygenase URS_2606 PF00438 S-adenosylmethionine synthetase, N-terminal domain URS_2606 PF02773 S-adenosylmethionine synthetase, C-terminal domain URS_2606 PF02772 S-adenosylmethionine synthetase, central domain URS_2607 PF02779 Transketolase, pyrimidine binding domain URS_2607 PF00456 Transketolase, thiamine diphosphate binding domain URS_2607 PF02780 Transketolase, C-terminal domain URS_2610 PF04264 YceI-like domain URS_2612 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain URS_2612 PF00117 Glutamine amidotransferase class-I URS_2613 PF00171 Aldehyde dehydrogenase family URS_2616 PF00465 Iron-containing alcohol dehydrogenase URS_2617 PF05970 PIF1-like helicase URS_2617 PF14493 Helix-turn-helix domain URS_2619 PF06445 GyrI-like small molecule binding domain URS_2620 PF02110 Hydroxyethylthiazole kinase family URS_2623 PF01433 Peptidase family M1 domain URS_2623 PF17432 Domain of unknown function (DUF3458_C) ARM repeats URS_2623 PF11940 Domain of unknown function (DUF3458) Ig-like fold URS_2625 PF00582 Universal stress protein family URS_2628 PF00690 Cation transporter/ATPase, N-terminus URS_2628 PF00689 Cation transporting ATPase, C-terminus URS_2629 PF02308 MgtC family URS_2630 PF03594 Benzoate membrane transport protein URS_2631 PF01810 LysE type translocator URS_2633 PF03466 LysR substrate binding domain URS_2633 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2636 PF07859 alpha/beta hydrolase fold URS_2637 PF02803 Thiolase, C-terminal domain URS_2637 PF00108 Thiolase, N-terminal domain URS_2643 PF07690 Major Facilitator Superfamily URS_2644 PF12170 DNA polymerase III tau subunit V interacting with alpha URS_2644 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding URS_2644 PF12169 DNA polymerase III subunits gamma and tau domain III URS_2645 PF03061 Thioesterase superfamily URS_2646 PF00465 Iron-containing alcohol dehydrogenase URS_2647 PF01451 Low molecular weight phosphotyrosine protein phosphatase URS_2648 PF01565 FAD binding domain URS_2648 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain URS_2652 PF00271 Helicase conserved C-terminal domain URS_2652 PF00270 DEAD/DEAH box helicase URS_2652 PF02559 CarD-like/TRCF domain URS_2652 PF17757 UvrB interaction domain URS_2652 PF03461 TRCF domain URS_2653 PF00270 DEAD/DEAH box helicase URS_2653 PF02559 CarD-like/TRCF domain URS_2653 PF03461 TRCF domain URS_2653 PF17757 UvrB interaction domain URS_2653 PF00271 Helicase conserved C-terminal domain URS_2655 PF00211 Adenylate and Guanylate cyclase catalytic domain URS_2656 PF00111 2Fe-2S iron-sulfur cluster binding domain URS_2657 PF00012 Hsp70 protein URS_2658 PF00226 DnaJ domain URS_2658 PF07743 HSCB C-terminal oligomerisation domain URS_2659 PF01521 Iron-sulphur cluster biosynthesis URS_2660 PF01592 NifU-like N terminal domain URS_2661 PF00266 Aminotransferase class-V URS_2662 PF02082 Transcriptional regulator URS_2665 PF00216 Bacterial DNA-binding protein URS_2666 PF09312 SurA N-terminal domain URS_2666 PF00639 PPIC-type PPIASE domain URS_2667 PF12832 MFS_1 like family URS_2668 PF01425 Amidase URS_2670 PF02785 Biotin carboxylase C-terminal domain URS_2670 PF00289 Biotin carboxylase, N-terminal domain URS_2670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain URS_2671 PF00364 Biotin-requiring enzyme URS_2672 PF01220 Dehydroquinase class II URS_2673 PF00817 impB/mucB/samB family URS_2673 PF11799 impB/mucB/samB family C-terminal domain URS_2673 PF13438 Domain of unknown function (DUF4113) URS_2674 PF00717 Peptidase S24-like URS_2678 PF05525 Branched-chain amino acid transport protein URS_2679 PF00557 Metallopeptidase family M24 URS_2680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2680 PF03466 LysR substrate binding domain URS_2681 PF04607 Region found in RelA / SpoT proteins URS_2681 PF02824 TGS domain URS_2681 PF13291 ACT domain URS_2683 PF03466 LysR substrate binding domain URS_2683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2684 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_2684 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_2684 PF02770 Acyl-CoA dehydrogenase, middle domain URS_2686 PF07690 Major Facilitator Superfamily URS_2687 PF02515 CoA-transferase family III URS_2695 PF00291 Pyridoxal-phosphate dependent enzyme URS_2697 PF04073 Aminoacyl-tRNA editing domain URS_2699 PF13419 Haloacid dehalogenase-like hydrolase URS_2701 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase URS_2702 PF02277 Phosphoribosyltransferase URS_2704 PF02654 Cobalamin-5-phosphate synthase URS_2705 PF04172 LrgB-like family URS_2706 PF03788 LrgA family URS_2707 PF03466 LysR substrate binding domain URS_2707 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2711 PF04143 Sulphur transport URS_2713 PF04273 Putative phosphatase (DUF442) URS_2713 PF00753 Metallo-beta-lactamase superfamily URS_2716 PF07690 Major Facilitator Superfamily URS_2719 PF07690 Major Facilitator Superfamily URS_2720 PF02515 CoA-transferase family III URS_2721 PF09339 IclR helix-turn-helix domain URS_2722 PF07690 Major Facilitator Superfamily URS_2723 PF02515 CoA-transferase family III URS_2724 PF09339 IclR helix-turn-helix domain URS_2725 PF00108 Thiolase, N-terminal domain URS_2725 PF02803 Thiolase, C-terminal domain URS_2726 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain URS_2726 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain URS_2726 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain URS_2728 PF00378 Enoyl-CoA hydratase/isomerase URS_2729 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_2729 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_2729 PF02770 Acyl-CoA dehydrogenase, middle domain URS_2730 PF07690 Major Facilitator Superfamily URS_2731 PF07690 Major Facilitator Superfamily URS_2732 PF01144 Coenzyme A transferase URS_2733 PF00872 Transposase, Mutator family URS_2734 PF01144 Coenzyme A transferase URS_2735 PF01144 Coenzyme A transferase URS_2737 PF07690 Major Facilitator Superfamily URS_2739 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_2739 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_2739 PF12806 Acetyl-CoA dehydrogenase C-terminal like URS_2739 PF02770 Acyl-CoA dehydrogenase, middle domain URS_2740 PF00378 Enoyl-CoA hydratase/isomerase URS_2741 PF00596 Class II Aldolase and Adducin N-terminal domain URS_2742 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain URS_2743 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2743 PF03466 LysR substrate binding domain URS_2746 PF09339 IclR helix-turn-helix domain URS_2746 PF01614 Bacterial transcriptional regulator URS_2747 PF01144 Coenzyme A transferase URS_2748 PF01144 Coenzyme A transferase URS_2749 PF00108 Thiolase, N-terminal domain URS_2749 PF02803 Thiolase, C-terminal domain URS_2750 PF00206 Lyase URS_2750 PF10397 Adenylosuccinate lyase C-terminus URS_2751 PF00561 alpha/beta hydrolase fold URS_2752 PF07690 Major Facilitator Superfamily URS_2753 PF02627 Carboxymuconolactone decarboxylase family URS_2754 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal URS_2754 PF00775 Dioxygenase URS_2755 PF00775 Dioxygenase URS_2756 PF01487 Type I 3-dehydroquinase URS_2757 PF05048 Periplasmic copper-binding protein (NosD) URS_2758 PF04966 Carbohydrate-selective porin, OprB family URS_2761 PF01695 IstB-like ATP binding protein URS_2762 PF00665 Integrase core domain URS_2762 PF02796 Helix-turn-helix domain of resolvase URS_2765 PF12833 Helix-turn-helix domain URS_2765 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term URS_2766 PF00171 Aldehyde dehydrogenase family URS_2767 PF05199 GMC oxidoreductase URS_2771 PF01047 MarR family URS_2772 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_2772 PF03466 LysR substrate binding domain URS_2773 PF10415 Fumarase C C-terminus URS_2773 PF00206 Lyase URS_2774 PF00873 AcrB/AcrD/AcrF family URS_2775 PF00873 AcrB/AcrD/AcrF family URS_2776 PF13533 Biotin-lipoyl like URS_2778 PF00107 Zinc-binding dehydrogenase URS_2778 PF08240 Alcohol dehydrogenase GroES-like domain URS_2783 PF00375 Sodium:dicarboxylate symporter family URS_2785 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) URS_2786 PF00924 Mechanosensitive ion channel URS_2787 PF00664 ABC transporter transmembrane region URS_2787 PF00005 ABC transporter URS_2789 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term URS_2789 PF12833 Helix-turn-helix domain URS_2790 PF01597 Glycine cleavage H-protein URS_2791 PF00793 DAHP synthetase I family URS_2794 PF08240 Alcohol dehydrogenase GroES-like domain URS_2794 PF00107 Zinc-binding dehydrogenase URS_2795 PF02583 Metal-sensitive transcriptional repressor URS_2796 PF13091 PLD-like domain URS_2803 PF00106 short chain dehydrogenase URS_2806 PF02770 Acyl-CoA dehydrogenase, middle domain URS_2806 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_2806 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_2808 PF00665 Integrase core domain URS_2808 PF13936 Helix-turn-helix domain URS_2809 PF00884 Sulfatase URS_2809 PF08019 Phosphoethanolamine transferase EptA/EptB URS_2813 PF00206 Lyase URS_2813 PF10415 Fumarase C C-terminus URS_2814 PF16363 GDP-mannose 4,6 dehydratase URS_2815 PF02635 DsrE/DsrF-like family URS_2819 PF00892 EamA-like transporter family URS_2820 PF00392 Bacterial regulatory proteins, gntR family URS_2820 PF00155 Aminotransferase class I and II URS_2821 PF01638 HxlR-like helix-turn-helix URS_2823 PF00994 Probable molybdopterin binding domain URS_2823 PF03453 MoeA N-terminal region (domain I and II) URS_2823 PF03454 MoeA C-terminal region (domain IV) URS_2824 PF01967 MoaC family URS_2824 PF00994 Probable molybdopterin binding domain URS_2825 PF02391 MoaE protein URS_2827 PF04055 Radical SAM superfamily URS_2827 PF06463 Molybdenum Cofactor Synthesis C URS_2828 PF12804 MobA-like NTP transferase domain URS_2829 PF00384 Molybdopterin oxidoreductase URS_2829 PF04879 Molybdopterin oxidoreductase Fe4S4 domain URS_2829 PF04324 BFD-like [2Fe-2S] binding domain URS_2829 PF01568 Molydopterin dinucleotide binding domain URS_2830 PF18267 Rubredoxin NAD+ reductase C-terminal domain URS_2830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain URS_2830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain URS_2830 PF04324 BFD-like [2Fe-2S] binding domain URS_2830 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_2831 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain URS_2831 PF01077 Nitrite and sulphite reductase 4Fe-4S domain URS_2831 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_2831 PF18267 Rubredoxin NAD+ reductase C-terminal domain URS_2831 PF13806 Rieske-like [2Fe-2S] domain URS_2831 PF04324 BFD-like [2Fe-2S] binding domain URS_2832 PF07690 Major Facilitator Superfamily URS_2833 PF00072 Response regulator receiver domain URS_2833 PF00486 Transcriptional regulatory protein, C terminal URS_2834 PF00005 ABC transporter URS_2836 PF01266 FAD dependent oxidoreductase URS_2837 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase URS_2838 PF04977 Septum formation initiator URS_2839 PF03952 Enolase, N-terminal domain URS_2839 PF00113 Enolase, C-terminal TIM barrel domain URS_2840 PF00793 DAHP synthetase I family URS_2841 PF06418 CTP synthase N-terminus URS_2841 PF00117 Glutamine amidotransferase class-I URS_2845 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_2845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family URS_2847 PF00561 alpha/beta hydrolase fold URS_2848 PF00083 Sugar (and other) transporter URS_2849 PF02146 Sir2 family URS_2850 PF00474 Sodium:solute symporter family URS_2851 PF01037 Lrp/AsnC ligand binding domain URS_2852 PF01619 Proline dehydrogenase URS_2852 PF18327 Proline utilization A proline dehydrogenase N-terminal domain URS_2852 PF14850 DNA-binding domain of Proline dehydrogenase URS_2852 PF00171 Aldehyde dehydrogenase family URS_2853 PF04229 GrpB protein URS_2854 PF05958 tRNA (Uracil-5-)-methyltransferase URS_2856 PF09992 Phosphodiester glycosidase URS_2859 PF00749 tRNA synthetases class I (E and Q), catalytic domain URS_2859 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain URS_2860 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD URS_2861 PF00149 Calcineurin-like phosphoesterase URS_2863 PF00881 Nitroreductase family URS_2866 PF01116 Fructose-bisphosphate aldolase class-II URS_2868 PF00162 Phosphoglycerate kinase URS_2870 PF02545 Maf-like protein URS_2871 PF03575 Peptidase family S51 URS_2872 PF08007 Cupin superfamily protein URS_2873 PF01645 Conserved region in glutamate synthase URS_2876 PF03737 Aldolase/RraA URS_2877 PF13460 NAD(P)H-binding URS_2878 PF01649 Ribosomal protein S20 URS_2879 PF01757 Acyltransferase family URS_2881 PF00459 Inositol monophosphatase family URS_2882 PF13419 Haloacid dehalogenase-like hydrolase URS_2883 PF01479 S4 domain URS_2884 PF00154 recA bacterial DNA recombination protein URS_2885 PF02631 RecX family URS_2887 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 URS_2887 PF00132 Bacterial transferase hexapeptide (six repeats) URS_2888 PF07977 FabA-like domain URS_2889 PF00132 Bacterial transferase hexapeptide (six repeats) URS_2889 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD URS_2891 PF01103 Surface antigen URS_2891 PF07244 Surface antigen variable number repeat URS_2892 PF02163 Peptidase family M50 URS_2892 PF13180 PDZ domain URS_2892 PF17820 PDZ domain URS_2893 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain URS_2893 PF13288 DXP reductoisomerase C-terminal domain URS_2893 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase URS_2895 PF01255 Putative undecaprenyl diphosphate synthase URS_2896 PF01765 Ribosome recycling factor URS_2897 PF00696 Amino acid kinase family URS_2898 PF00919 Uncharacterized protein family UPF0004 URS_2898 PF18693 TRAM domain URS_2898 PF04055 Radical SAM superfamily URS_2899 PF00512 His Kinase A (phospho-acceptor) domain URS_2899 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_2899 PF00989 PAS fold URS_2900 PF00158 Sigma-54 interaction domain URS_2900 PF00072 Response regulator receiver domain URS_2900 PF02954 Bacterial regulatory protein, Fis family URS_2902 PF00294 pfkB family carbohydrate kinase URS_2904 PF01037 Lrp/AsnC ligand binding domain URS_2906 PF01527 Transposase URS_2908 PF00872 Transposase, Mutator family URS_2909 PF13276 HTH-like domain URS_2909 PF00665 Integrase core domain URS_2909 PF13333 Integrase core domain URS_2910 PF13737 Transposase DDE domain URS_2911 PF06434 Aconitate hydratase 2 N-terminus URS_2911 PF00330 Aconitase family (aconitate hydratase) URS_2911 PF11791 Aconitate B N-terminal domain URS_2916 PF17243 POTRA domain TamA domain 1 URS_2916 PF07244 Surface antigen variable number repeat URS_2916 PF01103 Surface antigen URS_2917 PF07690 Major Facilitator Superfamily URS_2918 PF03232 Ubiquinone biosynthesis protein COQ7 URS_2920 PF00486 Transcriptional regulatory protein, C terminal URS_2920 PF00072 Response regulator receiver domain URS_2921 PF13493 Domain of unknown function (DUF4118) URS_2921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_2921 PF00512 His Kinase A (phospho-acceptor) domain URS_2921 PF02702 Osmosensitive K+ channel His kinase sensor domain URS_2921 PF13492 GAF domain URS_2922 PF02669 K+-transporting ATPase, c chain URS_2924 PF03814 Potassium-transporting ATPase A subunit URS_2926 PF02152 Dihydroneopterin aldolase URS_2927 PF03109 ABC1 family URS_2928 PF00899 ThiF family URS_2931 PF03109 ABC1 family URS_2932 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_2932 PF02770 Acyl-CoA dehydrogenase, middle domain URS_2932 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_2933 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_2933 PF02770 Acyl-CoA dehydrogenase, middle domain URS_2933 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_2934 PF00583 Acetyltransferase (GNAT) family URS_2935 PF00487 Fatty acid desaturase URS_2936 PF12833 Helix-turn-helix domain URS_2936 PF12852 Cupin URS_2941 PF02673 Bacitracin resistance protein BacA URS_2942 PF03891 Domain of unknown function (DUF333) URS_2947 PF01264 Chorismate synthase URS_2948 PF05175 Methyltransferase small domain URS_2950 PF01613 Flavin reductase like domain URS_2951 PF13193 AMP-binding enzyme C-terminal domain URS_2951 PF00501 AMP-binding enzyme URS_2953 PF00106 short chain dehydrogenase URS_2954 PF12833 Helix-turn-helix domain URS_2955 PF09084 NMT1/THI5 like URS_2956 PF00528 Binding-protein-dependent transport system inner membrane component URS_2957 PF00528 Binding-protein-dependent transport system inner membrane component URS_2958 PF17827 PrmC N-terminal domain URS_2958 PF13847 Methyltransferase domain URS_2959 PF00472 RF-1 domain URS_2959 PF03462 PCRF domain URS_2961 PF00296 Luciferase-like monooxygenase URS_2962 PF03618 Kinase/pyrophosphorylase URS_2963 PF00391 PEP-utilising enzyme, mobile domain URS_2963 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain URS_2963 PF02896 PEP-utilising enzyme, TIM barrel domain URS_2965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain URS_2965 PF06481 COX Aromatic Rich Motif URS_2966 PF00115 Cytochrome C and Quinol oxidase polypeptide I URS_2967 PF00510 Cytochrome c oxidase subunit III URS_2968 PF03626 Prokaryotic Cytochrome C oxidase subunit IV URS_2969 PF01040 UbiA prenyltransferase family URS_2970 PF01250 Ribosomal protein S6 URS_2971 PF01084 Ribosomal protein S18 URS_2972 PF03948 Ribosomal protein L9, C-terminal domain URS_2972 PF01281 Ribosomal protein L9, N-terminal domain URS_2974 PF17862 AAA+ lid domain URS_2974 PF01434 Peptidase family M41 URS_2974 PF00004 ATPase family associated with various cellular activities (AAA) URS_2976 PF05166 YcgL domain URS_2977 PF00570 HRDC domain URS_2977 PF01612 3'-5' exonuclease URS_2978 PF13662 Toprim domain URS_2978 PF02132 RecR protein URS_2979 PF02575 YbaB/EbfC DNA-binding family URS_2980 PF01053 Cys/Met metabolism PLP-dependent enzyme URS_2982 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase URS_2982 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase URS_2984 PF01230 HIT domain URS_2986 PF00814 Glycoprotease family URS_2987 PF01165 Ribosomal protein S21 URS_2988 PF09424 Yqey-like protein URS_2990 PF01435 Peptidase family M48 URS_2991 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain URS_2991 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain URS_2994 PF00156 Phosphoribosyl transferase domain URS_2996 PF01180 Dihydroorotate dehydrogenase URS_3000 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus URS_3000 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus URS_3001 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus URS_3001 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus URS_3002 PF00881 Nitroreductase family URS_3004 PF00270 DEAD/DEAH box helicase URS_3004 PF00271 Helicase conserved C-terminal domain URS_3005 PF00313 'Cold-shock' DNA-binding domain URS_3007 PF00140 Sigma-70 factor, region 1.2 URS_3007 PF04545 Sigma-70, region 4 URS_3007 PF04542 Sigma-70 region 2 URS_3010 PF05690 Thiazole biosynthesis protein ThiG URS_3012 PF00043 Glutathione S-transferase, C-terminal domain URS_3012 PF02798 Glutathione S-transferase, N-terminal domain URS_3015 PF00196 Bacterial regulatory proteins, luxR family URS_3015 PF00072 Response regulator receiver domain URS_3016 PF07730 Histidine kinase URS_3016 PF05231 MASE1 URS_3016 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_3017 PF02390 Putative methyltransferase URS_3018 PF02770 Acyl-CoA dehydrogenase, middle domain URS_3018 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_3018 PF09317 Domain of unknown function (DUF1974) URS_3018 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_3020 PF05230 MASE2 domain URS_3020 PF00990 Diguanylate cyclase, GGDEF domain URS_3021 PF00083 Sugar (and other) transporter URS_3021 PF08946 Osmosensory transporter coiled coil URS_3022 PF06100 MCRA family URS_3026 PF05221 S-adenosyl-L-homocysteine hydrolase URS_3026 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain URS_3027 PF02219 Methylenetetrahydrofolate reductase URS_3028 PF04452 RNA methyltransferase URS_3029 PF00563 EAL domain URS_3029 PF03707 Bacterial signalling protein N terminal repeat URS_3029 PF00990 Diguanylate cyclase, GGDEF domain URS_3030 PF03949 Malic enzyme, NAD binding domain URS_3030 PF00390 Malic enzyme, N-terminal domain URS_3030 PF01515 Phosphate acetyl/butaryl transferase URS_3031 PF12627 Probable RNA and SrmB- binding site of polymerase A URS_3031 PF01743 Poly A polymerase head domain URS_3032 PF00462 Glutaredoxin URS_3033 PF00202 Aminotransferase class-III URS_3034 PF03466 LysR substrate binding domain URS_3034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_3035 PF01476 LysM domain URS_3035 PF01551 Peptidase family M23 URS_3036 PF01975 Survival protein SurE URS_3039 PF00768 D-alanyl-D-alanine carboxypeptidase URS_3039 PF07943 Penicillin-binding protein 5, C-terminal domain URS_3040 PF00132 Bacterial transferase hexapeptide (six repeats) URS_3041 PF00293 NUDIX domain URS_3043 PF04356 Protein of unknown function (DUF489) URS_3044 PF00206 Lyase URS_3044 PF08328 Adenylosuccinate lyase C-terminal URS_3046 PF08496 Peptidase family S49 N-terminal URS_3046 PF01343 Peptidase family S49 URS_3047 PF00005 ABC transporter URS_3048 PF00528 Binding-protein-dependent transport system inner membrane component URS_3049 PF00528 Binding-protein-dependent transport system inner membrane component URS_3050 PF12849 PBP superfamily domain URS_3051 PF00282 Pyridoxal-dependent decarboxylase conserved domain URS_3052 PF00202 Aminotransferase class-III URS_3054 PF00487 Fatty acid desaturase URS_3055 PF00970 Oxidoreductase FAD-binding domain URS_3055 PF00175 Oxidoreductase NAD-binding domain URS_3055 PF00111 2Fe-2S iron-sulfur cluster binding domain URS_3056 PF00440 Bacterial regulatory proteins, tetR family URS_3057 PF00210 Ferritin-like domain URS_3058 PF18337 RapA N-terminal Tudor like domain URS_3058 PF00271 Helicase conserved C-terminal domain URS_3058 PF12137 RNA polymerase recycling family C-terminal URS_3058 PF18339 RapA N-terminal Tudor like domain 1 URS_3058 PF00176 SNF2 family N-terminal domain URS_3059 PF00849 RNA pseudouridylate synthase URS_3060 PF03928 Haem-degrading URS_3061 PF00202 Aminotransferase class-III URS_3062 PF02581 Thiamine monophosphate synthase URS_3064 PF07943 Penicillin-binding protein 5, C-terminal domain URS_3064 PF00768 D-alanyl-D-alanine carboxypeptidase URS_3065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase URS_3066 PF00582 Universal stress protein family URS_3069 PF01569 PAP2 superfamily URS_3071 PF00884 Sulfatase URS_3071 PF08019 Phosphoethanolamine transferase EptA/EptB URS_3072 PF00072 Response regulator receiver domain URS_3072 PF00486 Transcriptional regulatory protein, C terminal URS_3073 PF00512 His Kinase A (phospho-acceptor) domain URS_3073 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_3073 PF08521 Two-component sensor kinase N-terminal URS_3075 PF13276 HTH-like domain URS_3075 PF13333 Integrase core domain URS_3075 PF00665 Integrase core domain URS_3076 PF00872 Transposase, Mutator family URS_3078 PF00561 alpha/beta hydrolase fold URS_3079 PF09828 Chromate resistance exported protein URS_3082 PF02583 Metal-sensitive transcriptional repressor URS_3085 PF13784 Fic/DOC family N-terminal URS_3085 PF02661 Fic/DOC family URS_3087 PF12102 Domain of unknown function (DUF3578) URS_3087 PF07728 AAA domain (dynein-related subfamily) URS_3089 PF13086 AAA domain URS_3089 PF13195 Protein of unknown function (DUF4011) URS_3089 PF13087 AAA domain URS_3089 PF13086 AAA domain URS_3089 PF13195 Protein of unknown function (DUF4011) URS_3089 PF13087 AAA domain URS_3090 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) URS_3090 PF12008 Type I restriction and modification enzyme - subunit R C terminal URS_3090 PF18766 SWI2/SNF2 ATPase URS_3094 PF02384 N-6 DNA Methylase URS_3094 PF12161 HsdM N-terminal domain URS_3096 PF03848 Tellurite resistance protein TehB URS_3096 PF09313 Domain of unknown function (DUF1971) URS_3110 PF00962 Adenosine/AMP deaminase URS_3111 PF00962 Adenosine/AMP deaminase URS_3112 PF00589 Phage integrase family URS_3112 PF13356 Arm DNA-binding domain URS_3114 PF00005 ABC transporter URS_3115 PF01061 ABC-2 type transporter URS_3116 PF14489 QueF-like protein URS_3116 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term URS_3118 PF01098 Cell cycle protein URS_3119 PF13406 Transglycosylase SLT domain URS_3120 PF05036 Sporulation related domain URS_3120 PF03330 Lytic transglycolase URS_3126 PF00889 Elongation factor TS URS_3127 PF00318 Ribosomal protein S2 URS_3128 PF00557 Metallopeptidase family M24 URS_3132 PF02668 Taurine catabolism dioxygenase TauD, TfdA family URS_3133 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain URS_3133 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_3134 PF04055 Radical SAM superfamily URS_3135 PF13559 Domain of unknown function (DUF4129) URS_3135 PF11992 Domain of unknown function (DUF3488) URS_3135 PF01841 Transglutaminase-like superfamily URS_3137 PF13817 IS66 C-terminal element URS_3137 PF03050 Transposase IS66 family URS_3137 PF13005 zinc-finger binding domain of transposase IS66 URS_3137 PF13007 Transposase C of IS166 homeodomain URS_3140 PF07963 Prokaryotic N-terminal methylation motif URS_3140 PF00114 Pilin (bacterial filament) URS_3145 PF14245 Type IV pilin PilA URS_3145 PF07963 Prokaryotic N-terminal methylation motif URS_3147 PF05192 MutS domain III URS_3147 PF00488 MutS domain V URS_3147 PF05188 MutS domain II URS_3147 PF05190 MutS family domain IV URS_3147 PF01624 MutS domain I URS_3149 PF00037 4Fe-4S binding domain URS_3149 PF11953 Domain of unknown function (DUF3470) URS_3151 PF01596 O-methyltransferase URS_3153 PF00132 Bacterial transferase hexapeptide (six repeats) URS_3154 PF01205 Uncharacterized protein family UPF0029 URS_3156 PF00664 ABC transporter transmembrane region URS_3156 PF00005 ABC transporter URS_3156 PF03412 Peptidase C39 family URS_3157 PF02321 Outer membrane efflux protein URS_3159 PF13276 HTH-like domain URS_3159 PF00665 Integrase core domain URS_3159 PF13333 Integrase core domain URS_3162 PF12399 Branched-chain amino acid ATP-binding cassette transporter URS_3162 PF00005 ABC transporter URS_3163 PF03968 OstA-like protein URS_3166 PF00571 CBS domain URS_3166 PF01380 SIS domain URS_3167 PF09190 DALR domain URS_3167 PF01406 tRNA synthetases class I (C) catalytic domain URS_3169 PF13360 PQQ-like domain URS_3170 PF02668 Taurine catabolism dioxygenase TauD, TfdA family URS_3171 PF00528 Binding-protein-dependent transport system inner membrane component URS_3172 PF00005 ABC transporter URS_3173 PF04069 Substrate binding domain of ABC-type glycine betaine transport system URS_3174 PF01966 HD domain URS_3175 PF01330 RuvA N terminal domain URS_3175 PF07499 RuvA, C-terminal domain URS_3176 PF17864 RuvB AAA lid domain URS_3176 PF05496 Holliday junction DNA helicase RuvB P-loop domain URS_3176 PF05491 RuvB C-terminal winged helix domain URS_3177 PF03061 Thioesterase superfamily URS_3178 PF01618 MotA/TolQ/ExbB proton channel family URS_3179 PF02472 Biopolymer transport protein ExbD/TolR URS_3181 PF07676 WD40-like Beta Propeller Repeat URS_3181 PF04052 TolB amino-terminal domain URS_3182 PF00691 OmpA family URS_3184 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain URS_3185 PF00588 SpoU rRNA Methylase family URS_3185 PF08032 RNA 2'-O ribose methyltransferase substrate binding URS_3189 PF00360 Phytochrome region URS_3189 PF00990 Diguanylate cyclase, GGDEF domain URS_3189 PF01590 GAF domain URS_3189 PF00563 EAL domain URS_3190 PF01979 Amidohydrolase family URS_3191 PF00929 Exonuclease URS_3193 PF00324 Amino acid permease URS_3195 PF02634 FdhD/NarQ family URS_3196 PF00384 Molybdopterin oxidoreductase URS_3197 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III URS_3197 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal URS_3198 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold URS_3198 PF00270 DEAD/DEAH box helicase URS_3198 PF04408 Helicase associated domain (HA2) URS_3198 PF00271 Helicase conserved C-terminal domain URS_3198 PF11898 Domain of unknown function (DUF3418) URS_3199 PF10417 C-terminal domain of 1-Cys peroxiredoxin URS_3199 PF00578 AhpC/TSA family URS_3203 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_3203 PF13192 Thioredoxin domain URS_3207 PF03883 Peroxide stress protein YaaA URS_3208 PF01546 Peptidase family M20/M25/M40 URS_3208 PF07687 Peptidase dimerisation domain URS_3210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) URS_3211 PF01842 ACT domain URS_3211 PF01817 Chorismate mutase type II URS_3211 PF00800 Prephenate dehydratase URS_3214 PF02770 Acyl-CoA dehydrogenase, middle domain URS_3214 PF00441 Acyl-CoA dehydrogenase, C-terminal domain URS_3214 PF02771 Acyl-CoA dehydrogenase, N-terminal domain URS_3215 PF00155 Aminotransferase class I and II URS_3217 PF13276 HTH-like domain URS_3217 PF00665 Integrase core domain URS_3217 PF13333 Integrase core domain URS_3218 PF00753 Metallo-beta-lactamase superfamily URS_3218 PF14864 Alkyl sulfatase C-terminal URS_3218 PF14863 Alkyl sulfatase dimerisation URS_3219 PF00440 Bacterial regulatory proteins, tetR family URS_3219 PF08361 MAATS-type transcriptional repressor, C-terminal region URS_3221 PF13333 Integrase core domain URS_3221 PF00665 Integrase core domain URS_3221 PF13276 HTH-like domain URS_3222 PF02080 TrkA-C domain URS_3222 PF06826 Predicted Permease Membrane Region URS_3223 PF02566 OsmC-like protein URS_3228 PF07499 RuvA, C-terminal domain URS_3228 PF01330 RuvA N terminal domain URS_3229 PF05985 Ethanolamine ammonia-lyase light chain (EutC) URS_3230 PF06751 Ethanolamine ammonia lyase large subunit (EutB) URS_3231 PF13520 Amino acid permease URS_3233 PF03060 Nitronate monooxygenase URS_3235 PF01207 Dihydrouridine synthase (Dus) URS_3236 PF07759 Protein of unknown function (DUF1615) URS_3238 PF00696 Amino acid kinase family URS_3238 PF01472 PUA domain URS_3239 PF01926 50S ribosome-binding GTPase URS_3239 PF01018 GTP1/OBG URS_3242 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain URS_3242 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain URS_3243 PF00892 EamA-like transporter family URS_3244 PF08212 Lipocalin-like domain URS_3245 PF17757 UvrB interaction domain URS_3245 PF12344 Ultra-violet resistance protein B URS_3245 PF02151 UvrB/uvrC motif URS_3245 PF00271 Helicase conserved C-terminal domain URS_3245 PF04851 Type III restriction enzyme, res subunit URS_3247 PF00990 Diguanylate cyclase, GGDEF domain URS_3247 PF00072 Response regulator receiver domain URS_3248 PF00444 Ribosomal protein L36 URS_3254 PF00892 EamA-like transporter family URS_3258 PF00330 Aconitase family (aconitate hydratase) URS_3258 PF00694 Aconitase C-terminal domain URS_3259 PF00285 Citrate synthase, C-terminal domain URS_3262 PF00392 Bacterial regulatory proteins, gntR family URS_3262 PF07729 FCD domain URS_3266 PF01037 Lrp/AsnC ligand binding domain URS_3277 PF00675 Insulinase (Peptidase family M16) URS_3277 PF05193 Peptidase M16 inactive domain URS_3278 PF00654 Voltage gated chloride channel URS_3279 PF02567 Phenazine biosynthesis-like protein URS_3281 PF00180 Isocitrate/isopropylmalate dehydrogenase URS_3282 PF00849 RNA pseudouridylate synthase URS_3284 PF03971 Monomeric isocitrate dehydrogenase URS_3285 PF00576 HIUase/Transthyretin family URS_3288 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_3288 PF00724 NADH:flavin oxidoreductase / NADH oxidase family URS_3289 PF08352 Oligopeptide/dipeptide transporter, C-terminal region URS_3289 PF00005 ABC transporter URS_3290 PF00528 Binding-protein-dependent transport system inner membrane component URS_3290 PF12911 N-terminal TM domain of oligopeptide transport permease C URS_3291 PF00528 Binding-protein-dependent transport system inner membrane component URS_3292 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle URS_3293 PF01464 Transglycosylase SLT domain URS_3293 PF01464 Transglycosylase SLT domain URS_3293 PF01476 LysM domain URS_3293 PF01476 LysM domain URS_3294 PF00929 Exonuclease URS_3296 PF00293 NUDIX domain URS_3296 PF09297 NADH pyrophosphatase zinc ribbon domain URS_3298 PF04972 BON domain URS_3299 PF02021 Uncharacterised protein family UPF0102 URS_3300 PF04348 LppC putative lipoprotein URS_3301 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases URS_3303 PF01494 FAD binding domain URS_3304 PF01494 FAD binding domain URS_3305 PF05195 Aminopeptidase P, N-terminal domain URS_3305 PF00557 Metallopeptidase family M24 URS_3306 PF03695 Uncharacterised protein family (UPF0149) URS_3320 PF04984 Phage tail sheath protein subtilisin-like domain URS_3320 PF17482 Phage tail sheath C-terminal domain URS_3326 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain URS_3329 PF03960 ArsC family URS_3330 PF01022 Bacterial regulatory protein, arsR family URS_3332 PF01758 Sodium Bile acid symporter family URS_3333 PF03358 NADPH-dependent FMN reductase URS_3334 PF07992 Pyridine nucleotide-disulphide oxidoreductase URS_3336 PF13610 DDE domain URS_3337 PF01494 FAD binding domain URS_3338 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_3338 PF03466 LysR substrate binding domain URS_3339 PF13737 Transposase DDE domain URS_3340 PF00860 Permease family URS_3341 PF03502 Nucleoside-specific channel-forming protein, Tsx URS_3344 PF03466 LysR substrate binding domain URS_3344 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family URS_3345 PF02608 ABC transporter substrate-binding protein PnrA-like URS_3346 PF02608 ABC transporter substrate-binding protein PnrA-like URS_3348 PF03171 2OG-Fe(II) oxygenase superfamily URS_3348 PF14226 non-haem dioxygenase in morphine synthesis N-terminal URS_3349 PF00355 Rieske [2Fe-2S] domain URS_3350 PF13737 Transposase DDE domain URS_3351 PF02583 Metal-sensitive transcriptional repressor URS_3352 PF00107 Zinc-binding dehydrogenase URS_3352 PF08240 Alcohol dehydrogenase GroES-like domain URS_3353 PF13610 DDE domain URS_3361 PF00512 His Kinase A (phospho-acceptor) domain URS_3361 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase URS_3361 PF00672 HAMP domain URS_3362 PF00486 Transcriptional regulatory protein, C terminal URS_3362 PF00072 Response regulator receiver domain URS_3364 PF00394 Multicopper oxidase URS_3364 PF07731 Multicopper oxidase URS_3364 PF07732 Multicopper oxidase URS_3366 PF07664 Ferrous iron transport protein B C terminus URS_3366 PF02421 Ferrous iron transport protein B URS_3366 PF07670 Nucleoside recognition URS_3368 PF01545 Cation efflux family URS_3370 PF13610 DDE domain URS_3372 PF12794 Mechanosensitive ion channel inner membrane domain 1 URS_3372 PF00924 Mechanosensitive ion channel URS_3372 PF12795 Mechanosensitive ion channel porin domain URS_3375 PF00999 Sodium/hydrogen exchanger family URS_3375 PF02254 TrkA-N domain URS_3376 PF13180 PDZ domain URS_3377 PF01435 Peptidase family M48 URS_3385 PF00004 ATPase family associated with various cellular activities (AAA) URS_3385 PF17862 AAA+ lid domain URS_3385 PF01434 Peptidase family M41 URS_3386 PF02861 Clp amino terminal domain, pathogenicity island component URS_3386 PF17871 AAA lid domain URS_3386 PF07724 AAA domain (Cdc48 subfamily) URS_3386 PF00004 ATPase family associated with various cellular activities (AAA) URS_3386 PF10431 C-terminal, D2-small domain, of ClpB protein URS_3389 PF13276 HTH-like domain URS_3389 PF13333 Integrase core domain URS_3389 PF00665 Integrase core domain URS_3392 PF02769 AIR synthase related protein, C-terminal domain URS_3392 PF00586 AIR synthase related protein, N-terminal domain URS_3395 PF00795 Carbon-nitrogen hydrolase URS_3397 PF00158 Sigma-54 interaction domain URS_3397 PF01590 GAF domain URS_3405 PF00392 Bacterial regulatory proteins, gntR family URS_3405 PF00155 Aminotransferase class I and II URS_3407 PF01266 FAD dependent oxidoreductase URS_3408 PF00324 Amino acid permease URS_3409 PF00892 EamA-like transporter family URS_3410 PF13356 Arm DNA-binding domain URS_3410 PF00589 Phage integrase family URS_3411 PF04233 Phage Mu protein F like protein URS_3415 PF01726 LexA DNA binding domain URS_3415 PF00717 Peptidase S24-like URS_3416 PF11798 IMS family HHH motif URS_3416 PF11799 impB/mucB/samB family C-terminal domain URS_3416 PF13438 Domain of unknown function (DUF4113) URS_3416 PF00817 impB/mucB/samB family URS_3418 PF00872 Transposase, Mutator family URS_3419 PF00665 Integrase core domain URS_3419 PF02796 Helix-turn-helix domain of resolvase URS_3420 PF01695 IstB-like ATP binding protein URS_3421 PF00872 Transposase, Mutator family URS_3426 PF02661 Fic/DOC family URS_3432 PF00245 Alkaline phosphatase URS_3439 PF13614 AAA domain URS_3440 PF02796 Helix-turn-helix domain of resolvase URS_3440 PF00239 Resolvase, N terminal domain URS_3442 PF08281 Sigma-70, region 4 URS_3442 PF04542 Sigma-70 region 2 URS_3444 PF05114 Protein of unknown function (DUF692) URS_3454 PF13610 DDE domain URS_3455 PF01527 Transposase URS_3456 PF00465 Iron-containing alcohol dehydrogenase URS_3459 PF00171 Aldehyde dehydrogenase family URS_3460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family URS_3462 PF16925 Tetracyclin repressor-like, C-terminal domain URS_3462 PF00440 Bacterial regulatory proteins, tetR family URS_3463 PF16884 N-terminal domain of oxidoreductase URS_3463 PF00107 Zinc-binding dehydrogenase URS_3465 PF02566 OsmC-like protein URS_3466 PF01047 MarR family URS_3467 PF13737 Transposase DDE domain URS_3468 PF13737 Transposase DDE domain