locus-tag class description LSO60_00005 PF00308 Bacterial dnaA protein LSO60_00005 PF08299 Bacterial dnaA protein helix-turn-helix LSO60_00005 PF11638 DnaA N-terminal domain LSO60_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LSO60_00010 PF02767 DNA polymerase III beta subunit, central domain LSO60_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LSO60_00015 PF02463 RecF/RecN/SMC N terminal domain LSO60_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_00020 PF18053 DNA gyrase B subunit insert domain LSO60_00020 PF01751 Toprim domain LSO60_00020 PF00204 DNA gyrase B LSO60_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LSO60_00030 PF00005 ABC transporter LSO60_00030 PF12848 ABC transporter LSO60_00050 PF01521 Iron-sulphur cluster biosynthesis LSO60_00055 PF03702 Anhydro-N-acetylmuramic acid kinase LSO60_00060 PF00579 tRNA synthetases class I (W and Y) LSO60_00095 PF01965 DJ-1/PfpI family LSO60_00100 PF15887 Putative zinc-binding metallo-peptidase LSO60_00100 PF10005 zinc-ribbon domain LSO60_00110 PF00171 Aldehyde dehydrogenase family LSO60_00115 PF00209 Sodium:neurotransmitter symporter family LSO60_00125 PF02535 ZIP Zinc transporter LSO60_00130 PF01029 NusB family LSO60_00130 PF01189 16S rRNA methyltransferase RsmB/F LSO60_00135 PF02911 Formyl transferase, C-terminal domain LSO60_00135 PF00551 Formyl transferase LSO60_00140 PF00920 Dehydratase family LSO60_00150 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_00155 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO60_00170 PF00860 Permease family LSO60_00175 PF00311 Phosphoenolpyruvate carboxylase LSO60_00180 PF00440 Bacterial regulatory proteins, tetR family LSO60_00185 PF13533 Biotin-lipoyl like LSO60_00190 PF00873 AcrB/AcrD/AcrF family LSO60_00200 PF00226 DnaJ domain LSO60_00200 PF01556 DnaJ C terminal domain LSO60_00200 PF00684 DnaJ central domain LSO60_00205 PF01113 Dihydrodipicolinate reductase, N-terminus LSO60_00205 PF05173 Dihydrodipicolinate reductase, C-terminus LSO60_00215 PF07690 Major Facilitator Superfamily LSO60_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_00220 PF03466 LysR substrate binding domain LSO60_00230 PF00392 Bacterial regulatory proteins, gntR family LSO60_00230 PF00155 Aminotransferase class I and II LSO60_00235 PF00107 Zinc-binding dehydrogenase LSO60_00235 PF08240 Alcohol dehydrogenase GroES-like domain LSO60_00240 PF03352 Methyladenine glycosylase LSO60_00255 PF14815 NUDIX domain LSO60_00255 PF00633 Helix-hairpin-helix motif LSO60_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein LSO60_00260 PF01230 HIT domain LSO60_00265 PF01738 Dienelactone hydrolase family LSO60_00270 PF07043 Protein of unknown function (DUF1328) LSO60_00275 PF03692 Putative zinc- or iron-chelating domain LSO60_00285 PF13411 MerR HTH family regulatory protein LSO60_00290 PF07995 Glucose / Sorbosone dehydrogenase LSO60_00295 PF00144 Beta-lactamase LSO60_00300 PF12002 MgsA AAA+ ATPase C terminal LSO60_00300 PF00004 ATPase family associated with various cellular activities (AAA) LSO60_00300 PF16193 AAA C-terminal domain LSO60_00305 PF01226 Formate/nitrite transporter LSO60_00310 PF01259 SAICAR synthetase LSO60_00320 PF00701 Dihydrodipicolinate synthetase family LSO60_00325 PF00857 Isochorismatase family LSO60_00330 PF01758 Sodium Bile acid symporter family LSO60_00335 PF14542 GCN5-related N-acetyl-transferase LSO60_00350 PF02753 Pili assembly chaperone PapD, C-terminal domain LSO60_00350 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LSO60_00355 PF13954 PapC N-terminal domain LSO60_00355 PF00577 Outer membrane usher protein LSO60_00355 PF13953 PapC C-terminal domain LSO60_00365 PF02753 Pili assembly chaperone PapD, C-terminal domain LSO60_00365 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LSO60_00385 PF01380 SIS domain LSO60_00390 PF12804 MobA-like NTP transferase domain LSO60_00390 PF14602 Hexapeptide repeat of succinyl-transferase LSO60_00390 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_00395 PF04608 Phosphatidylglycerophosphatase A LSO60_00400 PF02769 AIR synthase related protein, C-terminal domain LSO60_00400 PF00586 AIR synthase related protein, N-terminal domain LSO60_00405 PF01029 NusB family LSO60_00410 PF00885 6,7-dimethyl-8-ribityllumazine synthase LSO60_00415 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LSO60_00415 PF00925 GTP cyclohydrolase II LSO60_00440 PF02580 D-Tyr-tRNA(Tyr) deacylase LSO60_00445 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LSO60_00445 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LSO60_00450 PF00581 Rhodanese-like domain LSO60_00455 PF02666 Phosphatidylserine decarboxylase LSO60_00465 PF00106 short chain dehydrogenase LSO60_00470 PF03928 Haem-degrading LSO60_00475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_00475 PF00512 His Kinase A (phospho-acceptor) domain LSO60_00475 PF11808 Phosphate regulon sensor protein PhoR LSO60_00475 PF00989 PAS fold LSO60_00480 PF00072 Response regulator receiver domain LSO60_00480 PF00486 Transcriptional regulatory protein, C terminal LSO60_00490 PF00106 short chain dehydrogenase LSO60_00495 PF01554 MatE LSO60_00500 PF00155 Aminotransferase class I and II LSO60_00505 PF04286 Protein of unknown function (DUF445) LSO60_00520 PF04262 Glutamate-cysteine ligase LSO60_00525 PF02600 Disulfide bond formation protein DsbB LSO60_00535 PF05728 Uncharacterised protein family (UPF0227) LSO60_00540 PF00204 DNA gyrase B LSO60_00540 PF01751 Toprim domain LSO60_00540 PF00986 DNA gyrase B subunit, carboxyl terminus LSO60_00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_00555 PF04115 Ureidoglycolate lyase LSO60_00560 PF03561 Allantoicase repeat LSO60_00565 PF01494 FAD binding domain LSO60_00575 PF00583 Acetyltransferase (GNAT) family LSO60_00585 PF00576 HIUase/Transthyretin family LSO60_00615 PF11412 Disulphide bond corrector protein DsbC LSO60_00615 PF02683 Cytochrome C biogenesis protein transmembrane region LSO60_00620 PF13417 Glutathione S-transferase, N-terminal domain LSO60_00620 PF00043 Glutathione S-transferase, C-terminal domain LSO60_00625 PF08448 PAS fold LSO60_00625 PF00990 Diguanylate cyclase, GGDEF domain LSO60_00630 PF07859 alpha/beta hydrolase fold LSO60_00640 PF03960 ArsC family LSO60_00645 PF03372 Endonuclease/Exonuclease/phosphatase family LSO60_00650 PF00156 Phosphoribosyl transferase domain LSO60_00660 PF00313 'Cold-shock' DNA-binding domain LSO60_00665 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LSO60_00665 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LSO60_00670 PF04101 Glycosyltransferase family 28 C-terminal domain LSO60_00670 PF03033 Glycosyltransferase family 28 N-terminal domain LSO60_00675 PF01225 Mur ligase family, catalytic domain LSO60_00675 PF02875 Mur ligase family, glutamate ligase domain LSO60_00675 PF08245 Mur ligase middle domain LSO60_00680 PF07478 D-ala D-ala ligase C-terminus LSO60_00680 PF01820 D-ala D-ala ligase N-terminus LSO60_00685 PF03799 Cell division protein FtsQ LSO60_00685 PF08478 POTRA domain, FtsQ-type LSO60_00690 PF02491 SHS2 domain inserted in FTSA LSO60_00695 PF12327 FtsZ family, C-terminal domain LSO60_00695 PF00091 Tubulin/FtsZ family, GTPase domain LSO60_00700 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LSO60_00715 PF17831 Pyruvate dehydrogenase E1 component middle domain LSO60_00715 PF00456 Transketolase, thiamine diphosphate binding domain LSO60_00720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LSO60_00720 PF00364 Biotin-requiring enzyme LSO60_00720 PF02817 e3 binding domain LSO60_00730 PF01169 Uncharacterized protein family UPF0016 LSO60_00735 PF00258 Flavodoxin LSO60_00735 PF01613 Flavin reductase like domain LSO60_00745 PF00571 CBS domain LSO60_00745 PF00478 IMP dehydrogenase / GMP reductase domain LSO60_00750 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO60_00750 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO60_00750 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO60_00750 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO60_00755 PF01243 Pyridoxamine 5'-phosphate oxidase LSO60_00755 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LSO60_00760 PF13936 Helix-turn-helix domain LSO60_00760 PF00665 Integrase core domain LSO60_00775 PF09556 HaeIII restriction endonuclease LSO60_00780 PF17768 RecJ OB domain LSO60_00780 PF02272 DHHA1 domain LSO60_00780 PF01368 DHH family LSO60_00785 PF01381 Helix-turn-helix LSO60_00810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO60_00815 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LSO60_00825 PF05552 Conserved TM helix LSO60_00825 PF00924 Mechanosensitive ion channel LSO60_00835 PF00501 AMP-binding enzyme LSO60_00835 PF16177 Acetyl-coenzyme A synthetase N-terminus LSO60_00835 PF13193 AMP-binding enzyme C-terminal domain LSO60_00840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_00840 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO60_00845 PF00593 TonB dependent receptor LSO60_00845 PF07660 Secretin and TonB N terminus short domain LSO60_00845 PF07715 TonB-dependent Receptor Plug Domain LSO60_00850 PF00296 Luciferase-like monooxygenase LSO60_00855 PF03358 NADPH-dependent FMN reductase LSO60_00860 PF00072 Response regulator receiver domain LSO60_00860 PF00196 Bacterial regulatory proteins, luxR family LSO60_00865 PF00909 Ammonium Transporter Family LSO60_00880 PF09308 LuxQ, periplasmic LSO60_00880 PF00072 Response regulator receiver domain LSO60_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_00880 PF00512 His Kinase A (phospho-acceptor) domain LSO60_00885 PF04341 Protein of unknown function, DUF485 LSO60_00890 PF00474 Sodium:solute symporter family LSO60_00910 PF13936 Helix-turn-helix domain LSO60_00910 PF00665 Integrase core domain LSO60_00935 PF07715 TonB-dependent Receptor Plug Domain LSO60_00935 PF07660 Secretin and TonB N terminus short domain LSO60_00935 PF00593 TonB dependent receptor LSO60_00980 PF13614 AAA domain LSO60_00995 PF09335 SNARE associated Golgi protein LSO60_01000 PF07681 DoxX LSO60_01005 PF04076 Bacterial OB fold (BOF) protein LSO60_01010 PF00117 Glutamine amidotransferase class-I LSO60_01010 PF00958 GMP synthase C terminal domain LSO60_01010 PF02540 NAD synthase LSO60_01015 PF01909 Nucleotidyltransferase domain LSO60_01015 PF13427 Domain of unknown function (DUF4111) LSO60_01020 PF03551 Transcriptional regulator PadR-like family LSO60_01025 PF01475 Ferric uptake regulator family LSO60_01035 PF05726 Pirin C-terminal cupin domain LSO60_01035 PF02678 Pirin LSO60_01060 PF03485 Arginyl tRNA synthetase N terminal domain LSO60_01060 PF00750 tRNA synthetases class I (R) LSO60_01060 PF05746 DALR anticodon binding domain LSO60_01070 PF03949 Malic enzyme, NAD binding domain LSO60_01070 PF00390 Malic enzyme, N-terminal domain LSO60_01075 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LSO60_01075 PF04717 Type VI secretion system, phage-baseplate injector LSO60_01075 PF13296 Putative type VI secretion system Rhs element Vgr LSO60_01080 PF01471 Putative peptidoglycan binding domain LSO60_01080 PF01510 N-acetylmuramoyl-L-alanine amidase LSO60_01080 PF01476 LysM domain LSO60_01125 PF01810 LysE type translocator LSO60_01130 PF00950 ABC 3 transport family LSO60_01135 PF00005 ABC transporter LSO60_01155 PF00119 ATP synthase A chain LSO60_01160 PF00137 ATP synthase subunit C LSO60_01165 PF00430 ATP synthase B/B' CF(0) LSO60_01170 PF00213 ATP synthase delta (OSCP) subunit LSO60_01175 PF02874 ATP synthase alpha/beta family, beta-barrel domain LSO60_01175 PF00306 ATP synthase alpha/beta chain, C terminal domain LSO60_01175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO60_01180 PF00231 ATP synthase LSO60_01185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO60_01185 PF02874 ATP synthase alpha/beta family, beta-barrel domain LSO60_01190 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LSO60_01200 PF08240 Alcohol dehydrogenase GroES-like domain LSO60_01200 PF00107 Zinc-binding dehydrogenase LSO60_01210 PF00082 Subtilase family LSO60_01210 PF05922 Peptidase inhibitor I9 LSO60_01215 PF00255 Glutathione peroxidase LSO60_01225 PF07690 Major Facilitator Superfamily LSO60_01230 PF00440 Bacterial regulatory proteins, tetR family LSO60_01235 PF00892 EamA-like transporter family LSO60_01240 PF02608 ABC transporter substrate-binding protein PnrA-like LSO60_01245 PF00355 Rieske [2Fe-2S] domain LSO60_01245 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO60_01260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_01260 PF03466 LysR substrate binding domain LSO60_01275 PF00005 ABC transporter LSO60_01280 PF02653 Branched-chain amino acid transport system / permease component LSO60_01285 PF02653 Branched-chain amino acid transport system / permease component LSO60_01290 PF01300 Telomere recombination LSO60_01295 PF17782 DprA winged helix domain LSO60_01295 PF02481 DNA recombination-mediator protein A LSO60_01300 PF01476 LysM domain LSO60_01305 PF01327 Polypeptide deformylase LSO60_01330 PF00440 Bacterial regulatory proteins, tetR family LSO60_01365 PF08497 Radical SAM N-terminal LSO60_01365 PF04055 Radical SAM superfamily LSO60_01365 PF11842 Domain of unknown function (DUF3362) LSO60_01380 PF00083 Sugar (and other) transporter LSO60_01380 PF07690 Major Facilitator Superfamily LSO60_01385 PF11798 IMS family HHH motif LSO60_01385 PF11799 impB/mucB/samB family C-terminal domain LSO60_01385 PF00817 impB/mucB/samB family LSO60_01390 PF01183 Glycosyl hydrolases family 25 LSO60_01395 PF07690 Major Facilitator Superfamily LSO60_01400 PF03641 Possible lysine decarboxylase LSO60_01405 PF03741 Integral membrane protein TerC family LSO60_01405 PF03471 Transporter associated domain LSO60_01410 PF02810 SEC-C motif LSO60_01415 PF03458 UPF0126 domain LSO60_01420 PF07690 Major Facilitator Superfamily LSO60_01425 PF03989 DNA gyrase C-terminal domain, beta-propeller LSO60_01425 PF00521 DNA gyrase/topoisomerase IV, subunit A LSO60_01430 PF13193 AMP-binding enzyme C-terminal domain LSO60_01430 PF00501 AMP-binding enzyme LSO60_01445 PF00719 Inorganic pyrophosphatase LSO60_01500 PF13817 IS66 C-terminal element LSO60_01500 PF03050 Transposase IS66 family LSO60_01500 PF13007 Transposase C of IS166 homeodomain LSO60_01500 PF13005 zinc-finger binding domain of transposase IS66 LSO60_01525 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO60_01540 PF00529 HlyD membrane-fusion protein of T1SS LSO60_01540 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_01545 PF00873 AcrB/AcrD/AcrF family LSO60_01565 PF07690 Major Facilitator Superfamily LSO60_01580 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LSO60_01580 PF01243 Pyridoxamine 5'-phosphate oxidase LSO60_01595 PF00376 MerR family regulatory protein LSO60_01595 PF09278 MerR, DNA binding LSO60_01600 PF00403 Heavy-metal-associated domain LSO60_01605 PF01022 Bacterial regulatory protein, arsR family LSO60_01610 PF13340 Putative transposase of IS4/5 family (DUF4096) LSO60_01620 PF01545 Cation efflux family LSO60_01625 PF00529 HlyD membrane-fusion protein of T1SS LSO60_01625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_01630 PF00873 AcrB/AcrD/AcrF family LSO60_01635 PF02321 Outer membrane efflux protein LSO60_01650 PF01545 Cation efflux family LSO60_01650 PF16916 Dimerisation domain of Zinc Transporter LSO60_01670 PF14461 Prokaryotic E2 family B LSO60_01670 PF00899 ThiF family LSO60_01705 PF00543 Nitrogen regulatory protein P-II LSO60_01710 PF00909 Ammonium Transporter Family LSO60_01715 PF03477 ATP cone domain LSO60_01720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LSO60_01720 PF01872 RibD C-terminal domain LSO60_01730 PF00677 Lumazine binding domain LSO60_01750 PF00883 Cytosol aminopeptidase family, catalytic domain LSO60_01750 PF02789 Cytosol aminopeptidase family, N-terminal domain LSO60_01755 PF03739 Lipopolysaccharide export system permease LptF/LptG LSO60_01760 PF03739 Lipopolysaccharide export system permease LptF/LptG LSO60_01765 PF01676 Metalloenzyme superfamily LSO60_01765 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LSO60_01770 PF17820 PDZ domain LSO60_01770 PF01471 Putative peptidoglycan binding domain LSO60_01770 PF03572 Peptidase family S41 LSO60_01775 PF00072 Response regulator receiver domain LSO60_01775 PF02954 Bacterial regulatory protein, Fis family LSO60_01775 PF00158 Sigma-54 interaction domain LSO60_01780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_01780 PF00512 His Kinase A (phospho-acceptor) domain LSO60_01785 PF00196 Bacterial regulatory proteins, luxR family LSO60_01785 PF00072 Response regulator receiver domain LSO60_01790 PF00768 D-alanyl-D-alanine carboxypeptidase LSO60_01795 PF00291 Pyridoxal-phosphate dependent enzyme LSO60_01800 PF00742 Homoserine dehydrogenase LSO60_01800 PF01842 ACT domain LSO60_01800 PF03447 Homoserine dehydrogenase, NAD binding domain LSO60_01805 PF01548 Transposase LSO60_01805 PF02371 Transposase IS116/IS110/IS902 family LSO60_01870 PF10411 Disulfide bond isomerase protein N-terminus LSO60_01870 PF13098 Thioredoxin-like domain LSO60_01875 PF02899 Phage integrase, N-terminal SAM-like domain LSO60_01875 PF00589 Phage integrase family LSO60_01885 PF07664 Ferrous iron transport protein B C terminus LSO60_01885 PF07670 Nucleoside recognition LSO60_01885 PF02421 Ferrous iron transport protein B LSO60_01895 PF08245 Mur ligase middle domain LSO60_01895 PF02875 Mur ligase family, glutamate ligase domain LSO60_01900 PF01098 Cell cycle protein LSO60_01905 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO60_01910 PF01258 Prokaryotic dksA/traR C4-type zinc finger LSO60_01915 PF00149 Calcineurin-like phosphoesterase LSO60_01920 PF00293 NUDIX domain LSO60_01925 PF13667 ThiC-associated domain LSO60_01925 PF01964 Radical SAM ThiC family LSO60_01935 PF01895 PhoU domain LSO60_01940 PF04362 Bacterial Fe(2+) trafficking LSO60_01945 PF14698 Argininosuccinate lyase C-terminal LSO60_01945 PF00206 Lyase LSO60_01950 PF07694 5TMR of 5TMR-LYT LSO60_01950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_01950 PF06580 Histidine kinase LSO60_01955 PF04397 LytTr DNA-binding domain LSO60_01955 PF00072 Response regulator receiver domain LSO60_01960 PF03900 Porphobilinogen deaminase, C-terminal domain LSO60_01960 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LSO60_01985 PF00816 H-NS histone family LSO60_02000 PF03958 Bacterial type II/III secretion system short domain LSO60_02000 PF00263 Bacterial type II and III secretion system protein LSO60_02005 PF12401 Protein of unknown function (DUF2662) LSO60_02005 PF00498 FHA domain LSO60_02010 PF13419 Haloacid dehalogenase-like hydrolase LSO60_02015 PF04715 Anthranilate synthase component I, N terminal region LSO60_02015 PF00425 chorismate binding enzyme LSO60_02040 PF03143 Elongation factor Tu C-terminal domain LSO60_02040 PF00009 Elongation factor Tu GTP binding domain LSO60_02040 PF03144 Elongation factor Tu domain 2 LSO60_02050 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LSO60_02055 PF00467 KOW motif LSO60_02055 PF02357 Transcription termination factor nusG LSO60_02060 PF00298 Ribosomal protein L11, RNA binding domain LSO60_02060 PF03946 Ribosomal protein L11, N-terminal domain LSO60_02065 PF00687 Ribosomal protein L1p/L10e family LSO60_02070 PF00466 Ribosomal protein L10 LSO60_02075 PF00542 Ribosomal protein L7/L12 C-terminal domain LSO60_02075 PF16320 Ribosomal protein L7/L12 dimerisation domain LSO60_02080 PF04563 RNA polymerase beta subunit LSO60_02080 PF04561 RNA polymerase Rpb2, domain 2 LSO60_02080 PF04565 RNA polymerase Rpb2, domain 3 LSO60_02080 PF10385 RNA polymerase beta subunit external 1 domain LSO60_02080 PF00562 RNA polymerase Rpb2, domain 6 LSO60_02080 PF04560 RNA polymerase Rpb2, domain 7 LSO60_02085 PF04997 RNA polymerase Rpb1, domain 1 LSO60_02085 PF00623 RNA polymerase Rpb1, domain 2 LSO60_02085 PF04983 RNA polymerase Rpb1, domain 3 LSO60_02085 PF05000 RNA polymerase Rpb1, domain 4 LSO60_02085 PF04998 RNA polymerase Rpb1, domain 5 LSO60_02100 PF00561 alpha/beta hydrolase fold LSO60_02105 PF00324 Amino acid permease LSO60_02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_02120 PF00183 Hsp90 protein LSO60_02135 PF00893 Small Multidrug Resistance protein LSO60_02150 PF01323 DSBA-like thioredoxin domain LSO60_02160 PF00210 Ferritin-like domain LSO60_02165 PF04324 BFD-like [2Fe-2S] binding domain LSO60_02170 PF01042 Endoribonuclease L-PSP LSO60_02175 PF02824 TGS domain LSO60_02175 PF13291 ACT domain LSO60_02175 PF04607 Region found in RelA / SpoT proteins LSO60_02180 PF01192 RNA polymerase Rpb6 LSO60_02185 PF00625 Guanylate kinase LSO60_02190 PF02401 LytB protein LSO60_02195 PF07963 Prokaryotic N-terminal methylation motif LSO60_02195 PF00114 Pilin (bacterial filament) LSO60_02220 PF07963 Prokaryotic N-terminal methylation motif LSO60_02220 PF00114 Pilin (bacterial filament) LSO60_02230 PF00886 Ribosomal protein S16 LSO60_02235 PF05239 PRC-barrel domain LSO60_02235 PF01782 RimM N-terminal domain LSO60_02240 PF01746 tRNA (Guanine-1)-methyltransferase LSO60_02245 PF01245 Ribosomal protein L19 LSO60_02250 PF00561 alpha/beta hydrolase fold LSO60_02255 PF03280 Proteobacterial lipase chaperone protein LSO60_02260 PF09157 Pseudouridine synthase II TruB, C-terminal LSO60_02260 PF16198 tRNA pseudouridylate synthase B C-terminal domain LSO60_02260 PF01509 TruB family pseudouridylate synthase (N terminal domain) LSO60_02265 PF01925 Sulfite exporter TauE/SafE LSO60_02275 PF00892 EamA-like transporter family LSO60_02280 PF00892 EamA-like transporter family LSO60_02285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO60_02285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO60_02290 PF01565 FAD binding domain LSO60_02290 PF02913 FAD linked oxidases, C-terminal domain LSO60_02310 PF03992 Antibiotic biosynthesis monooxygenase LSO60_02315 PF02525 Flavodoxin-like fold LSO60_02320 PF07690 Major Facilitator Superfamily LSO60_02325 PF12823 Domain of unknown function (DUF3817) LSO60_02330 PF12805 FUSC-like inner membrane protein yccS LSO60_02355 PF01594 AI-2E family transporter LSO60_02360 PF13614 AAA domain LSO60_02385 PF00248 Aldo/keto reductase family LSO60_02405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO60_02405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO60_02420 PF03466 LysR substrate binding domain LSO60_02420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_02425 PF00892 EamA-like transporter family LSO60_02435 PF02092 Glycyl-tRNA synthetase beta subunit LSO60_02435 PF05746 DALR anticodon binding domain LSO60_02440 PF02091 Glycyl-tRNA synthetase alpha subunit LSO60_02455 PF00571 CBS domain LSO60_02460 PF04024 PspC domain LSO60_02470 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO60_02470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_02470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_02470 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_02480 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LSO60_02480 PF01488 Shikimate / quinate 5-dehydrogenase LSO60_02480 PF08501 Shikimate dehydrogenase substrate binding domain LSO60_02485 PF00691 OmpA family LSO60_02495 PF01218 Coproporphyrinogen III oxidase LSO60_02500 PF00925 GTP cyclohydrolase II LSO60_02505 PF02780 Transketolase, C-terminal domain LSO60_02505 PF02779 Transketolase, pyrimidine binding domain LSO60_02505 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LSO60_02510 PF00459 Inositol monophosphatase family LSO60_02520 PF00270 DEAD/DEAH box helicase LSO60_02520 PF00271 Helicase conserved C-terminal domain LSO60_02530 PF00005 ABC transporter LSO60_02535 PF02405 Permease MlaE LSO60_02555 PF01544 CorA-like Mg2+ transporter protein LSO60_02560 PF03641 Possible lysine decarboxylase LSO60_02565 PF00293 NUDIX domain LSO60_02570 PF00156 Phosphoribosyl transferase domain LSO60_02575 PF17191 RecG wedge domain LSO60_02575 PF00270 DEAD/DEAH box helicase LSO60_02575 PF00271 Helicase conserved C-terminal domain LSO60_02590 PF01553 Acyltransferase LSO60_02600 PF00375 Sodium:dicarboxylate symporter family LSO60_02610 PF01926 50S ribosome-binding GTPase LSO60_02615 PF02082 Transcriptional regulator LSO60_02620 PF00970 Oxidoreductase FAD-binding domain LSO60_02620 PF00175 Oxidoreductase NAD-binding domain LSO60_02620 PF00042 Globin LSO60_02625 PF05872 Bacterial protein of unknown function (DUF853) LSO60_02630 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO60_02635 PF00117 Glutamine amidotransferase class-I LSO60_02640 PF00338 Ribosomal protein S10p/S20e LSO60_02645 PF00297 Ribosomal protein L3 LSO60_02650 PF00573 Ribosomal protein L4/L1 family LSO60_02655 PF00276 Ribosomal protein L23 LSO60_02660 PF00181 Ribosomal Proteins L2, RNA binding domain LSO60_02660 PF03947 Ribosomal Proteins L2, C-terminal domain LSO60_02665 PF00203 Ribosomal protein S19 LSO60_02670 PF00237 Ribosomal protein L22p/L17e LSO60_02680 PF00252 Ribosomal protein L16p/L10e LSO60_02685 PF00831 Ribosomal L29 protein LSO60_02690 PF00366 Ribosomal protein S17 LSO60_02695 PF00238 Ribosomal protein L14p/L23e LSO60_02700 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LSO60_02700 PF00467 KOW motif LSO60_02705 PF00281 Ribosomal protein L5 LSO60_02705 PF00673 ribosomal L5P family C-terminus LSO60_02710 PF00253 Ribosomal protein S14p/S29e LSO60_02715 PF00410 Ribosomal protein S8 LSO60_02720 PF00347 Ribosomal protein L6 LSO60_02725 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LSO60_02730 PF00333 Ribosomal protein S5, N-terminal domain LSO60_02730 PF03719 Ribosomal protein S5, C-terminal domain LSO60_02735 PF00327 Ribosomal protein L30p/L7e LSO60_02740 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LSO60_02745 PF00344 SecY translocase LSO60_02750 PF00444 Ribosomal protein L36 LSO60_02755 PF00416 Ribosomal protein S13/S18 LSO60_02760 PF00411 Ribosomal protein S11 LSO60_02765 PF01479 S4 domain LSO60_02765 PF00163 Ribosomal protein S4/S9 N-terminal domain LSO60_02770 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LSO60_02770 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LSO60_02770 PF01000 RNA polymerase Rpb3/RpoA insert domain LSO60_02775 PF01196 Ribosomal protein L17 LSO60_02780 PF00743 Flavin-binding monooxygenase-like LSO60_02785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_02785 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_02785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_02790 PF03937 Flavinator of succinate dehydrogenase LSO60_02820 PF09526 Probable metal-binding protein (DUF2387) LSO60_02825 PF01432 Peptidase family M3 LSO60_02835 PF00773 RNB domain LSO60_02835 PF08206 Ribonuclease B OB domain LSO60_02835 PF00575 S1 RNA binding domain LSO60_02835 PF17876 Cold shock domain LSO60_02835 PF08461 Ribonuclease R winged-helix domain LSO60_02860 PF00989 PAS fold LSO60_02860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_02860 PF00512 His Kinase A (phospho-acceptor) domain LSO60_02860 PF16736 Single Cache-like LSO60_02880 PF01557 Fumarylacetoacetate (FAA) hydrolase family LSO60_02885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO60_02890 PF07690 Major Facilitator Superfamily LSO60_02895 PF03466 LysR substrate binding domain LSO60_02895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_02910 PF03631 Virulence factor BrkB LSO60_02915 PF03358 NADPH-dependent FMN reductase LSO60_02945 PF02130 Uncharacterized protein family UPF0054 LSO60_02950 PF02562 PhoH-like protein LSO60_02955 PF04055 Radical SAM superfamily LSO60_02955 PF01938 TRAM domain LSO60_02955 PF00919 Uncharacterized protein family UPF0004 LSO60_02960 PF01464 Transglycosylase SLT domain LSO60_02960 PF01551 Peptidase family M23 LSO60_02960 PF10145 Phage-related minor tail protein LSO60_02970 PF00056 lactate/malate dehydrogenase, NAD binding domain LSO60_02970 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LSO60_02990 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LSO60_02995 PF01066 CDP-alcohol phosphatidyltransferase LSO60_03030 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO60_03030 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_03040 PF00753 Metallo-beta-lactamase superfamily LSO60_03040 PF04273 Putative phosphatase (DUF442) LSO60_03050 PF00085 Thioredoxin LSO60_03055 PF03061 Thioesterase superfamily LSO60_03060 PF13185 GAF domain LSO60_03070 PF04461 Protein of unknown function (DUF520) LSO60_03075 PF00581 Rhodanese-like domain LSO60_03090 PF02803 Thiolase, C-terminal domain LSO60_03090 PF00108 Thiolase, N-terminal domain LSO60_03100 PF00691 OmpA family LSO60_03100 PF13505 Outer membrane protein beta-barrel domain LSO60_03105 PF07687 Peptidase dimerisation domain LSO60_03105 PF01546 Peptidase family M20/M25/M40 LSO60_03110 PF08085 Entericidin EcnA/B family LSO60_03120 PF04304 Protein of unknown function (DUF454) LSO60_03125 PF03734 L,D-transpeptidase catalytic domain LSO60_03125 PF17969 L,D-transpeptidase C-terminal domain LSO60_03170 PF00667 FAD binding domain LSO60_03170 PF00175 Oxidoreductase NAD-binding domain LSO60_03170 PF00258 Flavodoxin LSO60_03180 PF12805 FUSC-like inner membrane protein yccS LSO60_03185 PF07690 Major Facilitator Superfamily LSO60_03190 PF00881 Nitroreductase family LSO60_03200 PF03616 Sodium/glutamate symporter LSO60_03205 PF01235 Sodium:alanine symporter family LSO60_03210 PF01734 Patatin-like phospholipase LSO60_03215 PF00849 RNA pseudouridylate synthase LSO60_03225 PF03831 PhnA domain LSO60_03225 PF08274 PhnA Zinc-Ribbon LSO60_03230 PF00293 NUDIX domain LSO60_03235 PF07411 Domain of unknown function (DUF1508) LSO60_03250 PF01207 Dihydrouridine synthase (Dus) LSO60_03260 PF02881 SRP54-type protein, helical bundle domain LSO60_03260 PF02978 Signal peptide binding domain LSO60_03260 PF00448 SRP54-type protein, GTPase domain LSO60_03270 PF03309 Type III pantothenate kinase LSO60_03275 PF03099 Biotin/lipoate A/B protein ligase family LSO60_03275 PF02237 Biotin protein ligase C terminal domain LSO60_03275 PF08279 HTH domain LSO60_03280 PF01925 Sulfite exporter TauE/SafE LSO60_03290 PF02463 RecF/RecN/SMC N terminal domain LSO60_03290 PF06470 SMC proteins Flexible Hinge Domain LSO60_03300 PF12826 Helix-hairpin-helix motif LSO60_03300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LSO60_03300 PF03120 NAD-dependent DNA ligase OB-fold domain LSO60_03300 PF01653 NAD-dependent DNA ligase adenylation domain LSO60_03300 PF00533 BRCA1 C Terminus (BRCT) domain LSO60_03310 PF00210 Ferritin-like domain LSO60_03315 PF00578 AhpC/TSA family LSO60_03330 PF00202 Aminotransferase class-III LSO60_03330 PF06968 Biotin and Thiamin Synthesis associated domain LSO60_03330 PF04055 Radical SAM superfamily LSO60_03335 PF00155 Aminotransferase class I and II LSO60_03355 PF00849 RNA pseudouridylate synthase LSO60_03355 PF01479 S4 domain LSO60_03360 PF04079 Segregation and condensation complex subunit ScpB LSO60_03365 PF02616 Segregation and condensation protein ScpA LSO60_03375 PF01300 Telomere recombination LSO60_03380 PF04315 Elongation factor P hydroxylase LSO60_03385 PF02620 Large ribosomal RNA subunit accumulation protein YceD LSO60_03390 PF01783 Ribosomal L32p protein family LSO60_03395 PF00698 Acyl transferase domain LSO60_03405 PF00550 Phosphopantetheine attachment site LSO60_03410 PF04972 BON domain LSO60_03410 PF01476 LysM domain LSO60_03415 PF02581 Thiamine monophosphate synthase LSO60_03415 PF08543 Phosphomethylpyrimidine kinase LSO60_03415 PF03070 TENA/THI-4/PQQC family LSO60_03420 PF13419 Haloacid dehalogenase-like hydrolase LSO60_03435 PF03653 Uncharacterised protein family (UPF0093) LSO60_03440 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO60_03440 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO60_03450 PF00164 Ribosomal protein S12/S23 LSO60_03455 PF00177 Ribosomal protein S7p/S5e LSO60_03460 PF03144 Elongation factor Tu domain 2 LSO60_03460 PF03764 Elongation factor G, domain IV LSO60_03460 PF00679 Elongation factor G C-terminus LSO60_03460 PF00009 Elongation factor Tu GTP binding domain LSO60_03460 PF14492 Elongation Factor G, domain II LSO60_03465 PF03144 Elongation factor Tu domain 2 LSO60_03465 PF03143 Elongation factor Tu C-terminal domain LSO60_03465 PF00009 Elongation factor Tu GTP binding domain LSO60_03475 PF00583 Acetyltransferase (GNAT) family LSO60_03480 PF04376 Arginine-tRNA-protein transferase, N terminus LSO60_03480 PF04377 Arginine-tRNA-protein transferase, C terminus LSO60_03485 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LSO60_03490 PF13847 Methyltransferase domain LSO60_03490 PF10119 Predicted methyltransferase regulatory domain LSO60_03495 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_03500 PF17854 FtsK alpha domain LSO60_03500 PF09397 Ftsk gamma domain LSO60_03500 PF01580 FtsK/SpoIIIE family LSO60_03500 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LSO60_03505 PF03976 Polyphosphate kinase 2 (PPK2) LSO60_03510 PF01810 LysE type translocator LSO60_03520 PF03776 Septum formation topological specificity factor MinE LSO60_03525 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO60_03530 PF03775 Septum formation inhibitor MinC, C-terminal domain LSO60_03540 PF01553 Acyltransferase LSO60_03545 PF13488 Glycine zipper LSO60_03545 PF00691 OmpA family LSO60_03550 PF00580 UvrD/REP helicase N-terminal domain LSO60_03550 PF13361 UvrD-like helicase C-terminal domain LSO60_03555 PF00692 dUTPase LSO60_03560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO60_03560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO60_03560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO60_03560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO60_03565 PF00696 Amino acid kinase family LSO60_03575 PF13230 Glutamine amidotransferases class-II LSO60_03580 PF01814 Hemerythrin HHE cation binding domain LSO60_03590 PF03658 RnfH family Ubiquitin LSO60_03595 PF04355 SmpA / OmlA family LSO60_03600 PF01475 Ferric uptake regulator family LSO60_03605 PF00437 Type II/IV secretion system protein LSO60_03610 PF00437 Type II/IV secretion system protein LSO60_03615 PF01168 Alanine racemase, N-terminal domain LSO60_03620 PF02673 Bacitracin resistance protein BacA LSO60_03625 PF13419 Haloacid dehalogenase-like hydrolase LSO60_03640 PF00149 Calcineurin-like phosphoesterase LSO60_03640 PF12320 Type 5 capsule protein repressor C-terminal domain LSO60_03655 PF01266 FAD dependent oxidoreductase LSO60_03660 PF00490 Delta-aminolevulinic acid dehydratase LSO60_03665 PF03061 Thioesterase superfamily LSO60_03670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_03670 PF00529 HlyD membrane-fusion protein of T1SS LSO60_03675 PF07690 Major Facilitator Superfamily LSO60_03680 PF00155 Aminotransferase class I and II LSO60_03680 PF00392 Bacterial regulatory proteins, gntR family LSO60_03715 PF02358 Trehalose-phosphatase LSO60_03720 PF00982 Glycosyltransferase family 20 LSO60_03725 PF07690 Major Facilitator Superfamily LSO60_03735 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LSO60_03735 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LSO60_03740 PF00375 Sodium:dicarboxylate symporter family LSO60_03745 PF00155 Aminotransferase class I and II LSO60_03750 PF03737 Aldolase/RraA LSO60_03755 PF03466 LysR substrate binding domain LSO60_03755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_03760 PF06276 Ferric iron reductase FhuF-like transporter LSO60_03760 PF04183 IucA / IucC family LSO60_03765 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LSO60_03770 PF06276 Ferric iron reductase FhuF-like transporter LSO60_03770 PF04183 IucA / IucC family LSO60_03785 PF07690 Major Facilitator Superfamily LSO60_03790 PF07715 TonB-dependent Receptor Plug Domain LSO60_03790 PF00593 TonB dependent receptor LSO60_03800 PF02321 Outer membrane efflux protein LSO60_03805 PF00005 ABC transporter LSO60_03805 PF02687 FtsX-like permease family LSO60_03805 PF12704 MacB-like periplasmic core domain LSO60_03810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_03825 PF09334 tRNA synthetases class I (M) LSO60_03825 PF00133 tRNA synthetases class I (I, L, M and V) LSO60_03825 PF08264 Anticodon-binding domain of tRNA LSO60_03825 PF13603 Leucyl-tRNA synthetase, Domain 2 LSO60_03835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO60_03835 PF00205 Thiamine pyrophosphate enzyme, central domain LSO60_03835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO60_03840 PF10369 Small subunit of acetolactate synthase LSO60_03845 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LSO60_03845 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LSO60_03850 PF00563 EAL domain LSO60_03850 PF00990 Diguanylate cyclase, GGDEF domain LSO60_03850 PF03707 Bacterial signalling protein N terminal repeat LSO60_03860 PF16658 Class II release factor RF3, C-terminal domain LSO60_03860 PF03144 Elongation factor Tu domain 2 LSO60_03860 PF00009 Elongation factor Tu GTP binding domain LSO60_03875 PF01026 TatD related DNase LSO60_03880 PF00694 Aconitase C-terminal domain LSO60_03880 PF00330 Aconitase family (aconitate hydratase) LSO60_03885 PF00899 ThiF family LSO60_03895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LSO60_03895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LSO60_03905 PF01207 Dihydrouridine synthase (Dus) LSO60_03925 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO60_03925 PF00175 Oxidoreductase NAD-binding domain LSO60_03930 PF00355 Rieske [2Fe-2S] domain LSO60_03935 PF07690 Major Facilitator Superfamily LSO60_03940 PF03573 outer membrane porin, OprD family LSO60_03945 PF09339 IclR helix-turn-helix domain LSO60_03945 PF01614 Bacterial transcriptional regulator LSO60_03950 PF00355 Rieske [2Fe-2S] domain LSO60_03960 PF00355 Rieske [2Fe-2S] domain LSO60_03975 PF14759 Reductase C-terminal LSO60_03975 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_03980 PF07690 Major Facilitator Superfamily LSO60_03990 PF12697 Alpha/beta hydrolase family LSO60_04000 PF01958 Domain of unknown function DUF108 LSO60_04000 PF03447 Homoserine dehydrogenase, NAD binding domain LSO60_04005 PF00171 Aldehyde dehydrogenase family LSO60_04010 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO60_04010 PF00205 Thiamine pyrophosphate enzyme, central domain LSO60_04010 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO60_04025 PF00005 ABC transporter LSO60_04030 PF01032 FecCD transport family LSO60_04040 PF00593 TonB dependent receptor LSO60_04040 PF07715 TonB-dependent Receptor Plug Domain LSO60_04055 PF05199 GMC oxidoreductase LSO60_04055 PF00732 GMC oxidoreductase LSO60_04060 PF00171 Aldehyde dehydrogenase family LSO60_04065 PF13977 BetI-type transcriptional repressor, C-terminal LSO60_04065 PF00440 Bacterial regulatory proteins, tetR family LSO60_04070 PF02028 BCCT, betaine/carnitine/choline family transporter LSO60_04080 PF03061 Thioesterase superfamily LSO60_04085 PF00285 Citrate synthase, C-terminal domain LSO60_04090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LSO60_04095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LSO60_04100 PF02910 Fumarate reductase flavoprotein C-term LSO60_04100 PF00890 FAD binding domain LSO60_04105 PF13085 2Fe-2S iron-sulfur cluster binding domain LSO60_04110 PF16078 2-oxoglutarate dehydrogenase N-terminus LSO60_04110 PF00676 Dehydrogenase E1 component LSO60_04110 PF16870 2-oxoglutarate dehydrogenase C-terminal LSO60_04110 PF02779 Transketolase, pyrimidine binding domain LSO60_04115 PF00364 Biotin-requiring enzyme LSO60_04115 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LSO60_04115 PF02817 e3 binding domain LSO60_04120 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_04120 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO60_04125 PF08442 ATP-grasp domain LSO60_04125 PF00549 CoA-ligase LSO60_04130 PF02629 CoA binding domain LSO60_04130 PF00549 CoA-ligase LSO60_04140 PF01522 Polysaccharide deacetylase LSO60_04140 PF14883 Hypothetical glycosyl hydrolase family 13 LSO60_04145 PF00535 Glycosyl transferase family 2 LSO60_04160 PF15975 Flotillin LSO60_04160 PF01145 SPFH domain / Band 7 family LSO60_04165 PF07290 Protein of unknown function (DUF1449) LSO60_04170 PF00579 tRNA synthetases class I (W and Y) LSO60_04175 PF05661 Protein of unknown function (DUF808) LSO60_04180 PF04228 Putative neutral zinc metallopeptidase LSO60_04185 PF13520 Amino acid permease LSO60_04190 PF00465 Iron-containing alcohol dehydrogenase LSO60_04200 PF03099 Biotin/lipoate A/B protein ligase family LSO60_04205 PF04359 Protein of unknown function (DUF493) LSO60_04210 PF04546 Sigma-70, non-essential region LSO60_04210 PF03979 Sigma-70 factor, region 1.1 LSO60_04210 PF00140 Sigma-70 factor, region 1.2 LSO60_04210 PF04542 Sigma-70 region 2 LSO60_04210 PF04539 Sigma-70 region 3 LSO60_04210 PF04545 Sigma-70, region 4 LSO60_04225 PF05724 Thiopurine S-methyltransferase (TPMT) LSO60_04230 PF09335 SNARE associated Golgi protein LSO60_04245 PF00581 Rhodanese-like domain LSO60_04245 PF17773 UPF0176 acylphosphatase like domain LSO60_04255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LSO60_04260 PF02261 Aspartate decarboxylase LSO60_04265 PF01195 Peptidyl-tRNA hydrolase LSO60_04270 PF01386 Ribosomal L25p family LSO60_04275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LSO60_04275 PF14572 Phosphoribosyl synthetase-associated domain LSO60_04300 PF08544 GHMP kinases C terminal LSO60_04300 PF00288 GHMP kinases N terminal domain LSO60_04305 PF03550 Outer membrane lipoprotein LolB LSO60_04315 PF01488 Shikimate / quinate 5-dehydrogenase LSO60_04315 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LSO60_04315 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LSO60_04320 PF10410 DnaB-helicase binding domain of primase LSO60_04320 PF08278 DNA primase DnaG DnaB-binding LSO60_04320 PF01807 CHC2 zinc finger LSO60_04320 PF08275 DNA primase catalytic core, N-terminal domain LSO60_04325 PF13525 Outer membrane lipoprotein LSO60_04330 PF00849 RNA pseudouridylate synthase LSO60_04330 PF01479 S4 domain LSO60_04335 PF02578 Multi-copper polyphenol oxidoreductase laccase LSO60_04340 PF03358 NADPH-dependent FMN reductase LSO60_04365 PF01668 SmpB protein LSO60_04370 PF01467 Cytidylyltransferase-like LSO60_04375 PF00037 4Fe-4S binding domain LSO60_04390 PF00593 TonB dependent receptor LSO60_04390 PF07715 TonB-dependent Receptor Plug Domain LSO60_04400 PF07685 CobB/CobQ-like glutamine amidotransferase domain LSO60_04400 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO60_04405 PF01507 Phosphoadenosine phosphosulfate reductase family LSO60_04410 PF00009 Elongation factor Tu GTP binding domain LSO60_04415 PF03600 Citrate transporter LSO60_04435 PF02785 Biotin carboxylase C-terminal domain LSO60_04435 PF00289 Biotin carboxylase, N-terminal domain LSO60_04435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO60_04445 PF01402 Ribbon-helix-helix protein, copG family LSO60_04445 PF08753 NikR C terminal nickel binding domain LSO60_04450 PF01425 Amidase LSO60_04455 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO60_04460 PF00893 Small Multidrug Resistance protein LSO60_04475 PF00005 ABC transporter LSO60_04485 PF01595 Cyclin M transmembrane N-terminal domain LSO60_04485 PF03471 Transporter associated domain LSO60_04485 PF00571 CBS domain LSO60_04490 PF03466 LysR substrate binding domain LSO60_04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_04495 PF00463 Isocitrate lyase family LSO60_04500 PF03060 Nitronate monooxygenase LSO60_04505 PF04170 NlpE N-terminal domain LSO60_04505 PF17185 NlpE C-terminal OB domain LSO60_04520 PF01774 UreD urease accessory protein LSO60_04525 PF00547 Urease, gamma subunit LSO60_04530 PF00699 Urease beta subunit LSO60_04535 PF00449 Urease alpha-subunit, N-terminal domain LSO60_04535 PF01979 Amidohydrolase family LSO60_04540 PF05194 UreE urease accessory protein, C-terminal domain LSO60_04540 PF02814 UreE urease accessory protein, N-terminal domain LSO60_04545 PF01730 UreF LSO60_04550 PF02492 CobW/HypB/UreG, nucleotide-binding domain LSO60_04580 PF00905 Penicillin binding protein transpeptidase domain LSO60_04580 PF03717 Penicillin-binding Protein dimerisation domain LSO60_04595 PF05191 Adenylate kinase, active site lid LSO60_04605 PF00730 HhH-GPD superfamily base excision DNA repair protein LSO60_04605 PF00633 Helix-hairpin-helix motif LSO60_04605 PF10576 Iron-sulfur binding domain of endonuclease III LSO60_04610 PF04060 Putative Fe-S cluster LSO60_04615 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LSO60_04615 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LSO60_04625 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LSO60_04630 PF02590 Predicted SPOUT methyltransferase LSO60_04635 PF00004 ATPase family associated with various cellular activities (AAA) LSO60_04635 PF05362 Lon protease (S16) C-terminal proteolytic domain LSO60_04635 PF02190 ATP-dependent protease La (LON) substrate-binding domain LSO60_04640 PF01812 5-formyltetrahydrofolate cyclo-ligase family LSO60_04645 PF05658 Head domain of trimeric autotransporter adhesin LSO60_04645 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO60_04645 PF03895 YadA-like membrane anchor domain LSO60_04645 PF13018 Extended Signal Peptide of Type V secretion system LSO60_04665 PF13533 Biotin-lipoyl like LSO60_04675 PF00266 Aminotransferase class-V LSO60_04685 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LSO60_04700 PF02687 FtsX-like permease family LSO60_04700 PF12704 MacB-like periplasmic core domain LSO60_04705 PF00005 ABC transporter LSO60_04710 PF00753 Metallo-beta-lactamase superfamily LSO60_04710 PF03772 Competence protein LSO60_04710 PF13567 Domain of unknown function (DUF4131) LSO60_04720 PF06965 Na+/H+ antiporter 1 LSO60_04720 PF01343 Peptidase family S49 LSO60_04730 PF00324 Amino acid permease LSO60_04735 PF04303 PrpF protein LSO60_04745 PF00348 Polyprenyl synthetase LSO60_04750 PF01145 SPFH domain / Band 7 family LSO60_04760 PF01734 Patatin-like phospholipase LSO60_04770 PF07690 Major Facilitator Superfamily LSO60_04775 PF00072 Response regulator receiver domain LSO60_04775 PF00486 Transcriptional regulatory protein, C terminal LSO60_04780 PF08521 Two-component sensor kinase N-terminal LSO60_04780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_04780 PF00512 His Kinase A (phospho-acceptor) domain LSO60_04790 PF00909 Ammonium Transporter Family LSO60_04805 PF08264 Anticodon-binding domain of tRNA LSO60_04805 PF00133 tRNA synthetases class I (I, L, M and V) LSO60_04805 PF10458 Valyl tRNA synthetase tRNA binding arm LSO60_04820 PF01906 Putative heavy-metal-binding LSO60_04825 PF01906 Putative heavy-metal-binding LSO60_04830 PF02321 Outer membrane efflux protein LSO60_04835 PF00873 AcrB/AcrD/AcrF family LSO60_04840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_04840 PF00529 HlyD membrane-fusion protein of T1SS LSO60_04845 PF01569 PAP2 superfamily LSO60_04855 PF00348 Polyprenyl synthetase LSO60_04860 PF00829 Ribosomal prokaryotic L21 protein LSO60_04865 PF01016 Ribosomal L27 protein LSO60_04870 PF02678 Pirin LSO60_04870 PF05726 Pirin C-terminal cupin domain LSO60_04875 PF03548 Outer membrane lipoprotein carrier protein LolA LSO60_04885 PF02403 Seryl-tRNA synthetase N-terminal domain LSO60_04885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO60_04890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LSO60_04890 PF10414 Sirohaem synthase dimerisation region LSO60_04890 PF14824 Sirohaem biosynthesis protein central LSO60_04895 PF00588 SpoU rRNA Methylase family LSO60_04905 PF01638 HxlR-like helix-turn-helix LSO60_04910 PF03358 NADPH-dependent FMN reductase LSO60_04920 PF00999 Sodium/hydrogen exchanger family LSO60_04930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_04930 PF03466 LysR substrate binding domain LSO60_04935 PF00561 alpha/beta hydrolase fold LSO60_04940 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_04940 PF18113 Rubredoxin binding C-terminal domain LSO60_04945 PF00301 Rubredoxin LSO60_04950 PF00156 Phosphoribosyl transferase domain LSO60_04960 PF00152 tRNA synthetases class II (D, K and N) LSO60_04960 PF01336 OB-fold nucleic acid binding domain LSO60_04965 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO60_04965 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO60_04985 PF00795 Carbon-nitrogen hydrolase LSO60_04985 PF02540 NAD synthase LSO60_04990 PF13296 Putative type VI secretion system Rhs element Vgr LSO60_04990 PF04717 Type VI secretion system, phage-baseplate injector LSO60_04990 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LSO60_05000 PF02492 CobW/HypB/UreG, nucleotide-binding domain LSO60_05000 PF07683 Cobalamin synthesis protein cobW C-terminal domain LSO60_05005 PF00375 Sodium:dicarboxylate symporter family LSO60_05010 PF07152 YaeQ protein LSO60_05015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO60_05025 PF14883 Hypothetical glycosyl hydrolase family 13 LSO60_05025 PF01522 Polysaccharide deacetylase LSO60_05030 PF00535 Glycosyl transferase family 2 LSO60_05045 PF04973 Nicotinamide mononucleotide transporter LSO60_05055 PF02230 Phospholipase/Carboxylesterase LSO60_05060 PF00083 Sugar (and other) transporter LSO60_05075 PF01327 Polypeptide deformylase LSO60_05080 PF04960 Glutaminase LSO60_05090 PF07690 Major Facilitator Superfamily LSO60_05105 PF00665 Integrase core domain LSO60_05105 PF13936 Helix-turn-helix domain LSO60_05120 PF02607 B12 binding domain LSO60_05120 PF02965 Vitamin B12 dependent methionine synthase, activation domain LSO60_05120 PF00809 Pterin binding enzyme LSO60_05120 PF02574 Homocysteine S-methyltransferase LSO60_05120 PF02310 B12 binding domain LSO60_05125 PF01384 Phosphate transporter family LSO60_05130 PF00291 Pyridoxal-phosphate dependent enzyme LSO60_05145 PF03781 Sulfatase-modifying factor enzyme 1 LSO60_05150 PF00884 Sulfatase LSO60_05160 PF01106 NifU-like domain LSO60_05160 PF01521 Iron-sulphur cluster biosynthesis LSO60_05165 PF00593 TonB dependent receptor LSO60_05165 PF07715 TonB-dependent Receptor Plug Domain LSO60_05170 PF07715 TonB-dependent Receptor Plug Domain LSO60_05170 PF00593 TonB dependent receptor LSO60_05180 PF12697 Alpha/beta hydrolase family LSO60_05185 PF00484 Carbonic anhydrase LSO60_05190 PF13472 GDSL-like Lipase/Acylhydrolase family LSO60_05195 PF00005 ABC transporter LSO60_05205 PF01694 Rhomboid family LSO60_05210 PF00912 Transglycosylase LSO60_05215 PF13090 Polyphosphate kinase C-terminal domain 2 LSO60_05215 PF17941 Polyphosphate kinase C-terminal domain 1 LSO60_05215 PF02503 Polyphosphate kinase middle domain LSO60_05215 PF13089 Polyphosphate kinase N-terminal domain LSO60_05220 PF00582 Universal stress protein family LSO60_05230 PF00582 Universal stress protein family LSO60_05240 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO60_05240 PF03449 Transcription elongation factor, N-terminal LSO60_05245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO60_05245 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LSO60_05245 PF02142 MGS-like domain LSO60_05250 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LSO60_05250 PF00117 Glutamine amidotransferase class-I LSO60_05265 PF01985 CRS1 / YhbY (CRM) domain LSO60_05270 PF01728 FtsJ-like methyltransferase LSO60_05275 PF01434 Peptidase family M41 LSO60_05275 PF06480 FtsH Extracellular LSO60_05275 PF00004 ATPase family associated with various cellular activities (AAA) LSO60_05275 PF17862 AAA+ lid domain LSO60_05280 PF00809 Pterin binding enzyme LSO60_05300 PF02595 Glycerate kinase family LSO60_05320 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LSO60_05320 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LSO60_05335 PF01266 FAD dependent oxidoreductase LSO60_05335 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LSO60_05345 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LSO60_05345 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LSO60_05350 PF00781 Diacylglycerol kinase catalytic domain LSO60_05365 PF00166 Chaperonin 10 Kd subunit LSO60_05370 PF00118 TCP-1/cpn60 chaperonin family LSO60_05375 PF00266 Aminotransferase class-V LSO60_05385 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_05390 PF00581 Rhodanese-like domain LSO60_05395 PF00392 Bacterial regulatory proteins, gntR family LSO60_05395 PF07702 UTRA domain LSO60_05400 PF00890 FAD binding domain LSO60_05400 PF02910 Fumarate reductase flavoprotein C-term LSO60_05420 PF01219 Prokaryotic diacylglycerol kinase LSO60_05425 PF00873 AcrB/AcrD/AcrF family LSO60_05430 PF00571 CBS domain LSO60_05430 PF01769 Divalent cation transporter LSO60_05430 PF03448 MgtE intracellular N domain LSO60_05440 PF01435 Peptidase family M48 LSO60_05445 PF01464 Transglycosylase SLT domain LSO60_05445 PF10145 Phage-related minor tail protein LSO60_05445 PF01551 Peptidase family M23 LSO60_05450 PF01171 PP-loop family LSO60_05460 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO60_05460 PF01464 Transglycosylase SLT domain LSO60_05465 PF03449 Transcription elongation factor, N-terminal LSO60_05465 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO60_05470 PF00355 Rieske [2Fe-2S] domain LSO60_05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_05475 PF03466 LysR substrate binding domain LSO60_05485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_05490 PF00005 ABC transporter LSO60_05510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_05510 PF03466 LysR substrate binding domain LSO60_05515 PF00180 Isocitrate/isopropylmalate dehydrogenase LSO60_05520 PF02028 BCCT, betaine/carnitine/choline family transporter LSO60_05525 PF07859 alpha/beta hydrolase fold LSO60_05530 PF00355 Rieske [2Fe-2S] domain LSO60_05530 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LSO60_05535 PF00171 Aldehyde dehydrogenase family LSO60_05540 PF00970 Oxidoreductase FAD-binding domain LSO60_05540 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO60_05540 PF00175 Oxidoreductase NAD-binding domain LSO60_05550 PF00999 Sodium/hydrogen exchanger family LSO60_05550 PF02254 TrkA-N domain LSO60_05555 PF01867 CRISPR associated protein Cas1 LSO60_05560 PF18019 HD domain LSO60_05585 PF02678 Pirin LSO60_05585 PF17954 Quercetinase C-terminal cupin domain LSO60_05595 PF01208 Uroporphyrinogen decarboxylase (URO-D) LSO60_05600 PF05675 Protein of unknown function (DUF817) LSO60_05605 PF07690 Major Facilitator Superfamily LSO60_05610 PF09335 SNARE associated Golgi protein LSO60_05615 PF01227 GTP cyclohydrolase I LSO60_05620 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO60_05620 PF01799 [2Fe-2S] binding domain LSO60_05625 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LSO60_05625 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LSO60_05645 PF00218 Indole-3-glycerol phosphate synthase LSO60_05650 PF02885 Glycosyl transferase family, helical bundle domain LSO60_05650 PF00591 Glycosyl transferase family, a/b domain LSO60_05655 PF00117 Glutamine amidotransferase class-I LSO60_05705 PF01381 Helix-turn-helix LSO60_05705 PF00717 Peptidase S24-like LSO60_05890 PF13356 Arm DNA-binding domain LSO60_05890 PF14659 Phage integrase, N-terminal SAM-like domain LSO60_05890 PF00589 Phage integrase family LSO60_05895 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO60_05895 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO60_05900 PF01784 NIF3 (NGG1p interacting factor 3) LSO60_05905 PF13180 PDZ domain LSO60_05910 PF05362 Lon protease (S16) C-terminal proteolytic domain LSO60_05910 PF13654 AAA domain LSO60_05915 PF07690 Major Facilitator Superfamily LSO60_05920 PF13593 SBF-like CPA transporter family (DUF4137) LSO60_05925 PF01197 Ribosomal protein L31 LSO60_05930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_05930 PF03466 LysR substrate binding domain LSO60_05935 PF00005 ABC transporter LSO60_05935 PF12857 TOBE-like domain LSO60_05940 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_05945 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_05960 PF01063 Amino-transferase class IV LSO60_05965 PF02618 YceG-like family LSO60_05970 PF02223 Thymidylate kinase LSO60_05975 PF00890 FAD binding domain LSO60_05975 PF02910 Fumarate reductase flavoprotein C-term LSO60_05980 PF13180 PDZ domain LSO60_05985 PF00120 Glutamine synthetase, catalytic domain LSO60_05995 PF06421 GTP-binding protein LepA C-terminus LSO60_05995 PF00679 Elongation factor G C-terminus LSO60_05995 PF00009 Elongation factor Tu GTP binding domain LSO60_05995 PF03144 Elongation factor Tu domain 2 LSO60_06000 PF10502 Signal peptidase, peptidase S26 LSO60_06010 PF00035 Double-stranded RNA binding motif LSO60_06010 PF14622 Ribonuclease-III-like LSO60_06015 PF01926 50S ribosome-binding GTPase LSO60_06015 PF07650 KH domain LSO60_06025 PF02565 Recombination protein O C terminal LSO60_06025 PF11967 Recombination protein O N terminal LSO60_06030 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LSO60_06035 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LSO60_06045 PF04345 Chorismate lyase LSO60_06050 PF01040 UbiA prenyltransferase family LSO60_06060 PF00375 Sodium:dicarboxylate symporter family LSO60_06080 PF00464 Serine hydroxymethyltransferase LSO60_06085 PF14760 Rnk N-terminus LSO60_06085 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO60_06095 PF05816 Toxic anion resistance protein (TelA) LSO60_06105 PF13192 Thioredoxin domain LSO60_06105 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_06110 PF12838 4Fe-4S dicluster domain LSO60_06115 PF01136 Peptidase family U32 LSO60_06115 PF16325 Peptidase family U32 C-terminal domain LSO60_06120 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LSO60_06125 PF00857 Isochorismatase family LSO60_06130 PF00970 Oxidoreductase FAD-binding domain LSO60_06130 PF00175 Oxidoreductase NAD-binding domain LSO60_06135 PF01980 tRNA-methyltransferase O LSO60_06135 PF18389 TrmO C-terminal domain LSO60_06140 PF07694 5TMR of 5TMR-LYT LSO60_06140 PF00990 Diguanylate cyclase, GGDEF domain LSO60_06145 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LSO60_06145 PF00437 Type II/IV secretion system protein LSO60_06155 PF00072 Response regulator receiver domain LSO60_06155 PF00486 Transcriptional regulatory protein, C terminal LSO60_06160 PF08521 Two-component sensor kinase N-terminal LSO60_06160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_06160 PF00512 His Kinase A (phospho-acceptor) domain LSO60_06170 PF00293 NUDIX domain LSO60_06180 PF00912 Transglycosylase LSO60_06180 PF00905 Penicillin binding protein transpeptidase domain LSO60_06180 PF14814 Bifunctional transglycosylase second domain LSO60_06185 PF01513 ATP-NAD kinase LSO60_06190 PF07023 Protein of unknown function (DUF1315) LSO60_06195 PF02885 Glycosyl transferase family, helical bundle domain LSO60_06195 PF00591 Glycosyl transferase family, a/b domain LSO60_06200 PF00375 Sodium:dicarboxylate symporter family LSO60_06205 PF01740 STAS domain LSO60_06205 PF00916 Sulfate permease family LSO60_06215 PF00860 Permease family LSO60_06220 PF00962 Adenosine/AMP deaminase LSO60_06235 PF01351 Ribonuclease HII LSO60_06240 PF02599 Global regulator protein family LSO60_06245 PF00696 Amino acid kinase family LSO60_06245 PF01842 ACT domain LSO60_06245 PF13840 ACT domain LSO60_06250 PF01411 tRNA synthetases class II (A) LSO60_06250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LSO60_06250 PF02272 DHHA1 domain LSO60_06255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LSO60_06255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LSO60_06265 PF13393 Histidyl-tRNA synthetase LSO60_06270 PF00709 Adenylosuccinate synthetase LSO60_06285 PF00248 Aldo/keto reductase family LSO60_06290 PF00027 Cyclic nucleotide-binding domain LSO60_06290 PF13545 Crp-like helix-turn-helix domain LSO60_06295 PF02566 OsmC-like protein LSO60_06300 PF00583 Acetyltransferase (GNAT) family LSO60_06305 PF08460 Bacterial SH3 domain LSO60_06305 PF01551 Peptidase family M23 LSO60_06310 PF00004 ATPase family associated with various cellular activities (AAA) LSO60_06310 PF07724 AAA domain (Cdc48 subfamily) LSO60_06310 PF17871 AAA lid domain LSO60_06310 PF02861 Clp amino terminal domain, pathogenicity island component LSO60_06310 PF10431 C-terminal, D2-small domain, of ClpB protein LSO60_06320 PF10672 S-adenosylmethionine-dependent methyltransferase LSO60_06320 PF02926 THUMP domain LSO60_06320 PF01170 Putative RNA methylase family UPF0020 LSO60_06325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LSO60_06325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LSO60_06330 PF01979 Amidohydrolase family LSO60_06355 PF04403 Paraquat-inducible protein A LSO60_06360 PF02470 MlaD protein LSO60_06370 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LSO60_06370 PF02769 AIR synthase related protein, C-terminal domain LSO60_06370 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LSO60_06380 PF00665 Integrase core domain LSO60_06380 PF13936 Helix-turn-helix domain LSO60_06390 PF01784 NIF3 (NGG1p interacting factor 3) LSO60_06400 PF00378 Enoyl-CoA hydratase/isomerase LSO60_06405 PF01467 Cytidylyltransferase-like LSO60_06405 PF00293 NUDIX domain LSO60_06410 PF04264 YceI-like domain LSO60_06415 PF00578 AhpC/TSA family LSO60_06425 PF06508 Queuosine biosynthesis protein QueC LSO60_06430 PF04055 Radical SAM superfamily LSO60_06435 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_06435 PF14602 Hexapeptide repeat of succinyl-transferase LSO60_06435 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LSO60_06455 PF04055 Radical SAM superfamily LSO60_06460 PF09285 Elongation factor P, C-terminal LSO60_06460 PF01132 Elongation factor P (EF-P) OB domain LSO60_06460 PF08207 Elongation factor P (EF-P) KOW-like domain LSO60_06465 PF02554 Carbon starvation protein CstA LSO60_06465 PF13722 5TM C-terminal transporter carbon starvation CstA LSO60_06470 PF04328 Selenoprotein, putative LSO60_06475 PF07726 ATPase family associated with various cellular activities (AAA) LSO60_06475 PF17863 AAA lid domain LSO60_06485 PF09084 NMT1/THI5 like LSO60_06490 PF00005 ABC transporter LSO60_06495 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_06500 PF01979 Amidohydrolase family LSO60_06505 PF12697 Alpha/beta hydrolase family LSO60_06510 PF02677 Epoxyqueuosine reductase QueH LSO60_06535 PF00990 Diguanylate cyclase, GGDEF domain LSO60_06555 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_06560 PF00588 SpoU rRNA Methylase family LSO60_06565 PF01336 OB-fold nucleic acid binding domain LSO60_06565 PF02811 PHP domain LSO60_06565 PF07733 Bacterial DNA polymerase III alpha NTPase domain LSO60_06565 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LSO60_06565 PF14579 Helix-hairpin-helix motif LSO60_06570 PF00710 Asparaginase, N-terminal LSO60_06570 PF17763 Glutaminase/Asparaginase C-terminal domain LSO60_06575 PF00155 Aminotransferase class I and II LSO60_06580 PF01641 SelR domain LSO60_06585 PF00255 Glutathione peroxidase LSO60_06590 PF12852 Cupin LSO60_06590 PF12833 Helix-turn-helix domain LSO60_06600 PF07715 TonB-dependent Receptor Plug Domain LSO60_06600 PF00593 TonB dependent receptor LSO60_06605 PF00155 Aminotransferase class I and II LSO60_06610 PF01909 Nucleotidyltransferase domain LSO60_06610 PF08335 GlnD PII-uridylyltransferase LSO60_06610 PF01966 HD domain LSO60_06615 PF02222 ATP-grasp domain LSO60_06620 PF14552 Tautomerase enzyme LSO60_06635 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO60_06635 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO60_06640 PF06071 Protein of unknown function (DUF933) LSO60_06640 PF01926 50S ribosome-binding GTPase LSO60_06645 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_06650 PF09383 NIL domain LSO60_06650 PF00005 ABC transporter LSO60_06655 PF03180 NLPA lipoprotein LSO60_06660 PF00296 Luciferase-like monooxygenase LSO60_06670 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO60_06670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_06680 PF00171 Aldehyde dehydrogenase family LSO60_06685 PF00939 Sodium:sulfate symporter transmembrane region LSO60_06690 PF00027 Cyclic nucleotide-binding domain LSO60_06690 PF00520 Ion transport protein LSO60_06705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_06705 PF03466 LysR substrate binding domain LSO60_06710 PF03707 Bacterial signalling protein N terminal repeat LSO60_06710 PF00563 EAL domain LSO60_06710 PF00990 Diguanylate cyclase, GGDEF domain LSO60_06715 PF04284 Protein of unknown function (DUF441) LSO60_06725 PF01975 Survival protein SurE LSO60_06740 PF00849 RNA pseudouridylate synthase LSO60_06740 PF01479 S4 domain LSO60_06755 PF00849 RNA pseudouridylate synthase LSO60_06755 PF01479 S4 domain LSO60_06760 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LSO60_06765 PF08676 MutL C terminal dimerisation domain LSO60_06765 PF01119 DNA mismatch repair protein, C-terminal domain LSO60_06775 PF17209 Hfq protein LSO60_06780 PF09312 SurA N-terminal domain LSO60_06780 PF00639 PPIC-type PPIASE domain LSO60_06785 PF04453 LPS transport system D LSO60_06785 PF03968 OstA-like protein LSO60_06790 PF01636 Phosphotransferase enzyme family LSO60_06795 PF00483 Nucleotidyl transferase LSO60_06800 PF02527 rRNA small subunit methyltransferase G LSO60_06805 PF13614 AAA domain LSO60_06810 PF02195 ParB-like nuclease domain LSO60_06810 PF17762 HTH domain found in ParB protein LSO60_06815 PF01618 MotA/TolQ/ExbB proton channel family LSO60_06825 PF00005 ABC transporter LSO60_06825 PF00664 ABC transporter transmembrane region LSO60_06830 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LSO60_06835 PF02348 Cytidylyltransferase LSO60_06840 PF09115 DNA polymerase III, delta subunit, C terminal LSO60_06850 PF01026 TatD related DNase LSO60_06870 PF11612 Type II secretion system (T2SS), protein J LSO60_06870 PF07963 Prokaryotic N-terminal methylation motif LSO60_06875 PF03934 Type II secretion system (T2SS), protein K LSO60_06885 PF03167 Uracil DNA glycosylase superfamily LSO60_06895 PF14437 MafB19-like deaminase LSO60_06905 PF02224 Cytidylate kinase LSO60_06910 PF00575 S1 RNA binding domain LSO60_06915 PF00216 Bacterial DNA-binding protein LSO60_06925 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LSO60_06935 PF00743 Flavin-binding monooxygenase-like LSO60_06945 PF03969 AFG1-like ATPase LSO60_06950 PF01274 Malate synthase LSO60_07250 PF00817 impB/mucB/samB family LSO60_07250 PF11799 impB/mucB/samB family C-terminal domain LSO60_07250 PF13438 Domain of unknown function (DUF4113) LSO60_07255 PF00717 Peptidase S24-like LSO60_07265 PF13356 Arm DNA-binding domain LSO60_07265 PF00589 Phage integrase family LSO60_07280 PF03741 Integral membrane protein TerC family LSO60_07280 PF03471 Transporter associated domain LSO60_07285 PF01266 FAD dependent oxidoreductase LSO60_07295 PF02542 YgbB family LSO60_07305 PF00793 DAHP synthetase I family LSO60_07310 PF01925 Sulfite exporter TauE/SafE LSO60_07330 PF07715 TonB-dependent Receptor Plug Domain LSO60_07330 PF00593 TonB dependent receptor LSO60_07335 PF02684 Lipid-A-disaccharide synthetase LSO60_07370 PF00069 Protein kinase domain LSO60_07370 PF03793 PASTA domain LSO60_07395 PF00753 Metallo-beta-lactamase superfamily LSO60_07395 PF16123 Hydroxyacylglutathione hydrolase C-terminus LSO60_07410 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_07415 PF00005 ABC transporter LSO60_07415 PF09383 NIL domain LSO60_07420 PF03180 NLPA lipoprotein LSO60_07425 PF02844 Phosphoribosylglycinamide synthetase, N domain LSO60_07425 PF02843 Phosphoribosylglycinamide synthetase, C domain LSO60_07425 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LSO60_07430 PF01808 AICARFT/IMPCHase bienzyme LSO60_07430 PF02142 MGS-like domain LSO60_07435 PF02954 Bacterial regulatory protein, Fis family LSO60_07460 PF13932 GidA associated domain LSO60_07460 PF01134 Glucose inhibited division protein A LSO60_07470 PF14403 Circularly permuted ATP-grasp type 2 LSO60_07480 PF01841 Transglutaminase-like superfamily LSO60_07480 PF08379 Bacterial transglutaminase-like N-terminal region LSO60_07495 PF00842 Alanine racemase, C-terminal domain LSO60_07495 PF01168 Alanine racemase, N-terminal domain LSO60_07500 PF00772 DnaB-like helicase N terminal domain LSO60_07500 PF03796 DnaB-like helicase C terminal domain LSO60_07505 PF00571 CBS domain LSO60_07540 PF02881 SRP54-type protein, helical bundle domain LSO60_07540 PF00448 SRP54-type protein, GTPase domain LSO60_07560 PF08173 Membrane bound YbgT-like protein LSO60_07565 PF02322 Cytochrome bd terminal oxidase subunit II LSO60_07570 PF01654 Cytochrome bd terminal oxidase subunit I LSO60_07580 PF07290 Protein of unknown function (DUF1449) LSO60_07590 PF00294 pfkB family carbohydrate kinase LSO60_07595 PF00675 Insulinase (Peptidase family M16) LSO60_07595 PF05193 Peptidase M16 inactive domain LSO60_07595 PF08367 Peptidase M16C associated LSO60_07600 PF02253 Phospholipase A1 LSO60_07605 PF02386 Cation transport protein LSO60_07610 PF02080 TrkA-C domain LSO60_07610 PF02254 TrkA-N domain LSO60_07615 PF00585 C-terminal regulatory domain of Threonine dehydratase LSO60_07615 PF00291 Pyridoxal-phosphate dependent enzyme LSO60_07620 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LSO60_07635 PF02774 Semialdehyde dehydrogenase, dimerisation domain LSO60_07635 PF01118 Semialdehyde dehydrogenase, NAD binding domain LSO60_07645 PF02617 ATP-dependent Clp protease adaptor protein ClpS LSO60_07650 PF02861 Clp amino terminal domain, pathogenicity island component LSO60_07650 PF07724 AAA domain (Cdc48 subfamily) LSO60_07650 PF17871 AAA lid domain LSO60_07650 PF00004 ATPase family associated with various cellular activities (AAA) LSO60_07650 PF10431 C-terminal, D2-small domain, of ClpB protein LSO60_07655 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LSO60_07660 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LSO60_07660 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LSO60_07665 PF00440 Bacterial regulatory proteins, tetR family LSO60_07675 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_07680 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_07685 PF00005 ABC transporter LSO60_07700 PF01709 Transcriptional regulator LSO60_07715 PF00210 Ferritin-like domain LSO60_07730 PF04055 Radical SAM superfamily LSO60_07730 PF06968 Biotin and Thiamin Synthesis associated domain LSO60_07735 PF08331 Domain of unknown function (DUF1730) LSO60_07740 PF03853 YjeF-related protein N-terminus LSO60_07740 PF01256 Carbohydrate kinase LSO60_07745 PF02075 Crossover junction endodeoxyribonuclease RuvC LSO60_07755 PF00296 Luciferase-like monooxygenase LSO60_07770 PF02773 S-adenosylmethionine synthetase, C-terminal domain LSO60_07770 PF02772 S-adenosylmethionine synthetase, central domain LSO60_07770 PF00438 S-adenosylmethionine synthetase, N-terminal domain LSO60_07775 PF02779 Transketolase, pyrimidine binding domain LSO60_07775 PF02780 Transketolase, C-terminal domain LSO60_07775 PF00456 Transketolase, thiamine diphosphate binding domain LSO60_07790 PF04264 YceI-like domain LSO60_07800 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LSO60_07800 PF00117 Glutamine amidotransferase class-I LSO60_07805 PF00171 Aldehyde dehydrogenase family LSO60_07820 PF00465 Iron-containing alcohol dehydrogenase LSO60_07825 PF14493 Helix-turn-helix domain LSO60_07825 PF05970 PIF1-like helicase LSO60_07835 PF06445 GyrI-like small molecule binding domain LSO60_07840 PF02110 Hydroxyethylthiazole kinase family LSO60_07855 PF11940 Domain of unknown function (DUF3458) Ig-like fold LSO60_07855 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LSO60_07855 PF01433 Peptidase family M1 domain LSO60_07865 PF00582 Universal stress protein family LSO60_07880 PF00689 Cation transporting ATPase, C-terminus LSO60_07880 PF00690 Cation transporter/ATPase, N-terminus LSO60_07885 PF02308 MgtC family LSO60_07890 PF03594 Benzoate membrane transport protein LSO60_07895 PF01810 LysE type translocator LSO60_07900 PF00923 Transaldolase/Fructose-6-phosphate aldolase LSO60_07905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_07905 PF03466 LysR substrate binding domain LSO60_07920 PF07859 alpha/beta hydrolase fold LSO60_07925 PF02803 Thiolase, C-terminal domain LSO60_07925 PF00108 Thiolase, N-terminal domain LSO60_07935 PF01575 MaoC like domain LSO60_07955 PF07690 Major Facilitator Superfamily LSO60_07960 PF12170 DNA polymerase III tau subunit V interacting with alpha LSO60_07960 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LSO60_07960 PF12169 DNA polymerase III subunits gamma and tau domain III LSO60_07965 PF03061 Thioesterase superfamily LSO60_07970 PF00465 Iron-containing alcohol dehydrogenase LSO60_07975 PF01451 Low molecular weight phosphotyrosine protein phosphatase LSO60_07980 PF01565 FAD binding domain LSO60_07980 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LSO60_08000 PF00270 DEAD/DEAH box helicase LSO60_08000 PF00271 Helicase conserved C-terminal domain LSO60_08000 PF03461 TRCF domain LSO60_08000 PF02559 CarD-like/TRCF domain LSO60_08000 PF17757 UvrB interaction domain LSO60_08010 PF00211 Adenylate and Guanylate cyclase catalytic domain LSO60_08015 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO60_08020 PF00012 Hsp70 protein LSO60_08025 PF00226 DnaJ domain LSO60_08025 PF07743 HSCB C-terminal oligomerisation domain LSO60_08030 PF01521 Iron-sulphur cluster biosynthesis LSO60_08035 PF01592 NifU-like N terminal domain LSO60_08040 PF00266 Aminotransferase class-V LSO60_08045 PF02082 Transcriptional regulator LSO60_08060 PF00216 Bacterial DNA-binding protein LSO60_08065 PF00639 PPIC-type PPIASE domain LSO60_08065 PF09312 SurA N-terminal domain LSO60_08070 PF12832 MFS_1 like family LSO60_08075 PF01425 Amidase LSO60_08085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO60_08085 PF02785 Biotin carboxylase C-terminal domain LSO60_08085 PF00289 Biotin carboxylase, N-terminal domain LSO60_08090 PF00364 Biotin-requiring enzyme LSO60_08095 PF01220 Dehydroquinase class II LSO60_08100 PF11799 impB/mucB/samB family C-terminal domain LSO60_08100 PF00817 impB/mucB/samB family LSO60_08100 PF13438 Domain of unknown function (DUF4113) LSO60_08105 PF00717 Peptidase S24-like LSO60_08125 PF05525 Branched-chain amino acid transport protein LSO60_08130 PF00557 Metallopeptidase family M24 LSO60_08135 PF03466 LysR substrate binding domain LSO60_08135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_08140 PF13291 ACT domain LSO60_08140 PF04607 Region found in RelA / SpoT proteins LSO60_08140 PF02824 TGS domain LSO60_08150 PF03466 LysR substrate binding domain LSO60_08150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_08155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_08155 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_08155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_08160 PF07690 Major Facilitator Superfamily LSO60_08165 PF02515 CoA-transferase family III LSO60_08200 PF00291 Pyridoxal-phosphate dependent enzyme LSO60_08210 PF04073 Aminoacyl-tRNA editing domain LSO60_08220 PF13419 Haloacid dehalogenase-like hydrolase LSO60_08230 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LSO60_08235 PF02277 Phosphoribosyltransferase LSO60_08245 PF02654 Cobalamin-5-phosphate synthase LSO60_08250 PF04172 LrgB-like family LSO60_08255 PF03788 LrgA family LSO60_08260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_08260 PF03466 LysR substrate binding domain LSO60_08280 PF04143 Sulphur transport LSO60_08290 PF00753 Metallo-beta-lactamase superfamily LSO60_08290 PF04273 Putative phosphatase (DUF442) LSO60_08305 PF07690 Major Facilitator Superfamily LSO60_08310 PF02515 CoA-transferase family III LSO60_08315 PF09339 IclR helix-turn-helix domain LSO60_08320 PF07690 Major Facilitator Superfamily LSO60_08325 PF02515 CoA-transferase family III LSO60_08330 PF09339 IclR helix-turn-helix domain LSO60_08335 PF00108 Thiolase, N-terminal domain LSO60_08335 PF02803 Thiolase, C-terminal domain LSO60_08340 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO60_08340 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LSO60_08340 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO60_08350 PF00378 Enoyl-CoA hydratase/isomerase LSO60_08355 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_08355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_08355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_08360 PF07690 Major Facilitator Superfamily LSO60_08365 PF07690 Major Facilitator Superfamily LSO60_08370 PF01144 Coenzyme A transferase LSO60_08375 PF01144 Coenzyme A transferase LSO60_08385 PF07690 Major Facilitator Superfamily LSO60_08395 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO60_08395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_08395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_08395 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_08400 PF00378 Enoyl-CoA hydratase/isomerase LSO60_08405 PF00596 Class II Aldolase and Adducin N-terminal domain LSO60_08410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO60_08415 PF03466 LysR substrate binding domain LSO60_08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_08420 PF06779 Uncharacterised MFS-type transporter YbfB LSO60_08425 PF09339 IclR helix-turn-helix domain LSO60_08425 PF01614 Bacterial transcriptional regulator LSO60_08430 PF01144 Coenzyme A transferase LSO60_08435 PF01144 Coenzyme A transferase LSO60_08440 PF00108 Thiolase, N-terminal domain LSO60_08440 PF02803 Thiolase, C-terminal domain LSO60_08445 PF10397 Adenylosuccinate lyase C-terminus LSO60_08445 PF00206 Lyase LSO60_08450 PF00561 alpha/beta hydrolase fold LSO60_08455 PF07690 Major Facilitator Superfamily LSO60_08460 PF02627 Carboxymuconolactone decarboxylase family LSO60_08465 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LSO60_08465 PF00775 Dioxygenase LSO60_08470 PF00775 Dioxygenase LSO60_08475 PF01487 Type I 3-dehydroquinase LSO60_08480 PF05048 Periplasmic copper-binding protein (NosD) LSO60_08485 PF04966 Carbohydrate-selective porin, OprB family LSO60_08490 PF13360 PQQ-like domain LSO60_08490 PF01011 PQQ enzyme repeat LSO60_08495 PF01614 Bacterial transcriptional regulator LSO60_08495 PF09339 IclR helix-turn-helix domain LSO60_08500 PF01494 FAD binding domain LSO60_08505 PF02661 Fic/DOC family LSO60_08515 PF01047 MarR family LSO60_08520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_08520 PF03466 LysR substrate binding domain LSO60_08525 PF10415 Fumarase C C-terminus LSO60_08525 PF00206 Lyase LSO60_08540 PF08281 Sigma-70, region 4 LSO60_08540 PF04542 Sigma-70 region 2 LSO60_08545 PF02321 Outer membrane efflux protein LSO60_08550 PF00873 AcrB/AcrD/AcrF family LSO60_08555 PF00873 AcrB/AcrD/AcrF family LSO60_08560 PF13533 Biotin-lipoyl like LSO60_08570 PF00107 Zinc-binding dehydrogenase LSO60_08570 PF08240 Alcohol dehydrogenase GroES-like domain LSO60_08595 PF00375 Sodium:dicarboxylate symporter family LSO60_08605 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LSO60_08610 PF00924 Mechanosensitive ion channel LSO60_08615 PF00664 ABC transporter transmembrane region LSO60_08615 PF00005 ABC transporter LSO60_08625 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LSO60_08625 PF12833 Helix-turn-helix domain LSO60_08630 PF01597 Glycine cleavage H-protein LSO60_08635 PF00793 DAHP synthetase I family LSO60_08640 PF00005 ABC transporter LSO60_08640 PF12848 ABC transporter LSO60_08645 PF08240 Alcohol dehydrogenase GroES-like domain LSO60_08645 PF00107 Zinc-binding dehydrogenase LSO60_08650 PF02583 Metal-sensitive transcriptional repressor LSO60_08655 PF13091 PLD-like domain LSO60_08680 PF00106 short chain dehydrogenase LSO60_08695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_08695 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_08695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_08705 PF08019 Phosphoethanolamine transferase EptA/EptB LSO60_08705 PF00884 Sulfatase LSO60_08720 PF00206 Lyase LSO60_08720 PF10415 Fumarase C C-terminus LSO60_08725 PF16363 GDP-mannose 4,6 dehydratase LSO60_08730 PF02635 DsrE/DsrF-like family LSO60_08750 PF00892 EamA-like transporter family LSO60_08755 PF00155 Aminotransferase class I and II LSO60_08755 PF00392 Bacterial regulatory proteins, gntR family LSO60_08760 PF01638 HxlR-like helix-turn-helix LSO60_08770 PF03454 MoeA C-terminal region (domain IV) LSO60_08770 PF00994 Probable molybdopterin binding domain LSO60_08770 PF03453 MoeA N-terminal region (domain I and II) LSO60_08775 PF01967 MoaC family LSO60_08775 PF00994 Probable molybdopterin binding domain LSO60_08780 PF02391 MoaE protein LSO60_08790 PF06463 Molybdenum Cofactor Synthesis C LSO60_08790 PF04055 Radical SAM superfamily LSO60_08795 PF12804 MobA-like NTP transferase domain LSO60_08800 PF01568 Molydopterin dinucleotide binding domain LSO60_08800 PF00384 Molybdopterin oxidoreductase LSO60_08800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LSO60_08800 PF04324 BFD-like [2Fe-2S] binding domain LSO60_08805 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO60_08805 PF04324 BFD-like [2Fe-2S] binding domain LSO60_08805 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO60_08805 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_08805 PF18267 Rubredoxin NAD+ reductase C-terminal domain LSO60_08810 PF04324 BFD-like [2Fe-2S] binding domain LSO60_08810 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO60_08810 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO60_08810 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_08810 PF13806 Rieske-like [2Fe-2S] domain LSO60_08810 PF18267 Rubredoxin NAD+ reductase C-terminal domain LSO60_08815 PF07690 Major Facilitator Superfamily LSO60_08820 PF00072 Response regulator receiver domain LSO60_08820 PF00486 Transcriptional regulatory protein, C terminal LSO60_08825 PF00005 ABC transporter LSO60_08835 PF01266 FAD dependent oxidoreductase LSO60_08840 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LSO60_08845 PF04977 Septum formation initiator LSO60_08850 PF03952 Enolase, N-terminal domain LSO60_08850 PF00113 Enolase, C-terminal TIM barrel domain LSO60_08855 PF00793 DAHP synthetase I family LSO60_08860 PF06418 CTP synthase N-terminus LSO60_08860 PF00117 Glutamine amidotransferase class-I LSO60_08880 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_08880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO60_08890 PF00561 alpha/beta hydrolase fold LSO60_08895 PF00083 Sugar (and other) transporter LSO60_08900 PF02146 Sir2 family LSO60_08905 PF00474 Sodium:solute symporter family LSO60_08910 PF01037 Lrp/AsnC ligand binding domain LSO60_08915 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LSO60_08915 PF14850 DNA-binding domain of Proline dehydrogenase LSO60_08915 PF00171 Aldehyde dehydrogenase family LSO60_08915 PF01619 Proline dehydrogenase LSO60_08920 PF04229 GrpB protein LSO60_08925 PF05958 tRNA (Uracil-5-)-methyltransferase LSO60_08935 PF09992 Phosphodiester glycosidase LSO60_08950 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO60_08950 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LSO60_08955 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LSO60_08960 PF00149 Calcineurin-like phosphoesterase LSO60_08965 PF00881 Nitroreductase family LSO60_08975 PF01116 Fructose-bisphosphate aldolase class-II LSO60_08985 PF00162 Phosphoglycerate kinase LSO60_08995 PF02545 Maf-like protein LSO60_09000 PF03575 Peptidase family S51 LSO60_09005 PF08007 Cupin superfamily protein LSO60_09010 PF01645 Conserved region in glutamate synthase LSO60_09025 PF03737 Aldolase/RraA LSO60_09030 PF13460 NAD(P)H-binding LSO60_09035 PF01649 Ribosomal protein S20 LSO60_09040 PF01757 Acyltransferase family LSO60_09050 PF00459 Inositol monophosphatase family LSO60_09055 PF13419 Haloacid dehalogenase-like hydrolase LSO60_09060 PF01479 S4 domain LSO60_09065 PF00154 recA bacterial DNA recombination protein LSO60_09070 PF02631 RecX family LSO60_09085 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LSO60_09085 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_09090 PF07977 FabA-like domain LSO60_09095 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LSO60_09095 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_09105 PF01103 Surface antigen LSO60_09105 PF07244 Surface antigen variable number repeat LSO60_09110 PF13180 PDZ domain LSO60_09110 PF17820 PDZ domain LSO60_09110 PF02163 Peptidase family M50 LSO60_09115 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LSO60_09115 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LSO60_09115 PF13288 DXP reductoisomerase C-terminal domain LSO60_09125 PF01255 Putative undecaprenyl diphosphate synthase LSO60_09130 PF01765 Ribosome recycling factor LSO60_09135 PF00696 Amino acid kinase family LSO60_09140 PF00919 Uncharacterized protein family UPF0004 LSO60_09140 PF04055 Radical SAM superfamily LSO60_09140 PF18693 TRAM domain LSO60_09145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_09145 PF00512 His Kinase A (phospho-acceptor) domain LSO60_09145 PF00989 PAS fold LSO60_09150 PF00158 Sigma-54 interaction domain LSO60_09150 PF02954 Bacterial regulatory protein, Fis family LSO60_09150 PF00072 Response regulator receiver domain LSO60_09160 PF00294 pfkB family carbohydrate kinase LSO60_09175 PF01037 Lrp/AsnC ligand binding domain LSO60_09185 PF00330 Aconitase family (aconitate hydratase) LSO60_09185 PF06434 Aconitate hydratase 2 N-terminus LSO60_09185 PF11791 Aconitate B N-terminal domain LSO60_09370 PF01695 IstB-like ATP binding protein LSO60_09415 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT LSO60_09505 PF07244 Surface antigen variable number repeat LSO60_09505 PF01103 Surface antigen LSO60_09505 PF17243 POTRA domain TamA domain 1 LSO60_09510 PF07690 Major Facilitator Superfamily LSO60_09515 PF03232 Ubiquinone biosynthesis protein COQ7 LSO60_09525 PF00072 Response regulator receiver domain LSO60_09525 PF00486 Transcriptional regulatory protein, C terminal LSO60_09530 PF13493 Domain of unknown function (DUF4118) LSO60_09530 PF13492 GAF domain LSO60_09530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_09530 PF00512 His Kinase A (phospho-acceptor) domain LSO60_09530 PF02702 Osmosensitive K+ channel His kinase sensor domain LSO60_09535 PF02669 K+-transporting ATPase, c chain LSO60_09545 PF03814 Potassium-transporting ATPase A subunit LSO60_09555 PF02152 Dihydroneopterin aldolase LSO60_09560 PF03109 ABC1 family LSO60_09565 PF00899 ThiF family LSO60_09575 PF03109 ABC1 family LSO60_09580 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_09580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_09580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_09585 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_09585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_09585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_09590 PF00583 Acetyltransferase (GNAT) family LSO60_09595 PF00487 Fatty acid desaturase LSO60_09600 PF12833 Helix-turn-helix domain LSO60_09600 PF12852 Cupin LSO60_09625 PF02673 Bacitracin resistance protein BacA LSO60_09630 PF03891 Domain of unknown function (DUF333) LSO60_09655 PF01264 Chorismate synthase LSO60_09660 PF05175 Methyltransferase small domain LSO60_09670 PF01613 Flavin reductase like domain LSO60_09675 PF00501 AMP-binding enzyme LSO60_09675 PF13193 AMP-binding enzyme C-terminal domain LSO60_09680 PF00106 short chain dehydrogenase LSO60_09685 PF12833 Helix-turn-helix domain LSO60_09690 PF13847 Methyltransferase domain LSO60_09690 PF17827 PrmC N-terminal domain LSO60_09695 PF03462 PCRF domain LSO60_09695 PF00472 RF-1 domain LSO60_09705 PF00296 Luciferase-like monooxygenase LSO60_09710 PF03618 Kinase/pyrophosphorylase LSO60_09715 PF02896 PEP-utilising enzyme, TIM barrel domain LSO60_09715 PF00391 PEP-utilising enzyme, mobile domain LSO60_09715 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LSO60_09725 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LSO60_09725 PF06481 COX Aromatic Rich Motif LSO60_09730 PF00115 Cytochrome C and Quinol oxidase polypeptide I LSO60_09735 PF00510 Cytochrome c oxidase subunit III LSO60_09740 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LSO60_09745 PF01040 UbiA prenyltransferase family LSO60_09750 PF01250 Ribosomal protein S6 LSO60_09755 PF01084 Ribosomal protein S18 LSO60_09760 PF03948 Ribosomal protein L9, C-terminal domain LSO60_09760 PF01281 Ribosomal protein L9, N-terminal domain LSO60_09770 PF01434 Peptidase family M41 LSO60_09770 PF17862 AAA+ lid domain LSO60_09770 PF00004 ATPase family associated with various cellular activities (AAA) LSO60_09780 PF05166 YcgL domain LSO60_09785 PF01612 3'-5' exonuclease LSO60_09785 PF00570 HRDC domain LSO60_09790 PF02132 RecR protein LSO60_09790 PF13662 Toprim domain LSO60_09795 PF02575 YbaB/EbfC DNA-binding family LSO60_09800 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO60_09810 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO60_09810 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO60_09820 PF01230 HIT domain LSO60_09830 PF00814 Glycoprotease family LSO60_09835 PF01165 Ribosomal protein S21 LSO60_09840 PF09424 Yqey-like protein LSO60_09850 PF01435 Peptidase family M48 LSO60_09855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO60_09855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO60_09870 PF00156 Phosphoribosyl transferase domain LSO60_09875 PF02674 Colicin V production protein LSO60_09880 PF01180 Dihydroorotate dehydrogenase LSO60_09900 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LSO60_09900 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LSO60_09905 PF00881 Nitroreductase family LSO60_09915 PF00271 Helicase conserved C-terminal domain LSO60_09915 PF00270 DEAD/DEAH box helicase LSO60_09920 PF00313 'Cold-shock' DNA-binding domain LSO60_09930 PF00140 Sigma-70 factor, region 1.2 LSO60_09930 PF04542 Sigma-70 region 2 LSO60_09930 PF04545 Sigma-70, region 4 LSO60_09945 PF05690 Thiazole biosynthesis protein ThiG LSO60_09955 PF00043 Glutathione S-transferase, C-terminal domain LSO60_09955 PF02798 Glutathione S-transferase, N-terminal domain LSO60_09960 PF03895 YadA-like membrane anchor domain LSO60_09960 PF05658 Head domain of trimeric autotransporter adhesin LSO60_09960 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO60_09965 PF00072 Response regulator receiver domain LSO60_09965 PF00196 Bacterial regulatory proteins, luxR family LSO60_09970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_09970 PF07730 Histidine kinase LSO60_09970 PF05231 MASE1 LSO60_09975 PF02390 Putative methyltransferase LSO60_09980 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_09980 PF09317 Domain of unknown function (DUF1974) LSO60_09980 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_09980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_09990 PF05230 MASE2 domain LSO60_09990 PF00990 Diguanylate cyclase, GGDEF domain LSO60_09995 PF00083 Sugar (and other) transporter LSO60_09995 PF08946 Osmosensory transporter coiled coil LSO60_10000 PF06100 MCRA family LSO60_10015 PF05221 S-adenosyl-L-homocysteine hydrolase LSO60_10015 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LSO60_10020 PF02219 Methylenetetrahydrofolate reductase LSO60_10025 PF04452 RNA methyltransferase LSO60_10030 PF00563 EAL domain LSO60_10030 PF00990 Diguanylate cyclase, GGDEF domain LSO60_10030 PF03707 Bacterial signalling protein N terminal repeat LSO60_10035 PF00390 Malic enzyme, N-terminal domain LSO60_10035 PF03949 Malic enzyme, NAD binding domain LSO60_10035 PF01515 Phosphate acetyl/butaryl transferase LSO60_10040 PF01743 Poly A polymerase head domain LSO60_10040 PF12627 Probable RNA and SrmB- binding site of polymerase A LSO60_10045 PF00462 Glutaredoxin LSO60_10050 PF00202 Aminotransferase class-III LSO60_10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_10065 PF03466 LysR substrate binding domain LSO60_10070 PF01551 Peptidase family M23 LSO60_10070 PF01476 LysM domain LSO60_10075 PF01975 Survival protein SurE LSO60_10090 PF07943 Penicillin-binding protein 5, C-terminal domain LSO60_10090 PF00768 D-alanyl-D-alanine carboxypeptidase LSO60_10095 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_10105 PF00293 NUDIX domain LSO60_10115 PF04356 Protein of unknown function (DUF489) LSO60_10120 PF08328 Adenylosuccinate lyase C-terminal LSO60_10120 PF00206 Lyase LSO60_10130 PF08496 Peptidase family S49 N-terminal LSO60_10130 PF01343 Peptidase family S49 LSO60_10135 PF00005 ABC transporter LSO60_10140 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_10145 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_10150 PF12849 PBP superfamily domain LSO60_10155 PF00282 Pyridoxal-dependent decarboxylase conserved domain LSO60_10160 PF00202 Aminotransferase class-III LSO60_10170 PF00487 Fatty acid desaturase LSO60_10175 PF00970 Oxidoreductase FAD-binding domain LSO60_10175 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO60_10175 PF00175 Oxidoreductase NAD-binding domain LSO60_10180 PF00440 Bacterial regulatory proteins, tetR family LSO60_10185 PF00210 Ferritin-like domain LSO60_10190 PF18339 RapA N-terminal Tudor like domain 1 LSO60_10190 PF00176 SNF2 family N-terminal domain LSO60_10190 PF12137 RNA polymerase recycling family C-terminal LSO60_10190 PF00271 Helicase conserved C-terminal domain LSO60_10190 PF18337 RapA N-terminal Tudor like domain LSO60_10195 PF00849 RNA pseudouridylate synthase LSO60_10200 PF03928 Haem-degrading LSO60_10205 PF00202 Aminotransferase class-III LSO60_10210 PF02581 Thiamine monophosphate synthase LSO60_10220 PF07943 Penicillin-binding protein 5, C-terminal domain LSO60_10220 PF00768 D-alanyl-D-alanine carboxypeptidase LSO60_10225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO60_10230 PF00582 Universal stress protein family LSO60_10240 PF01569 PAP2 superfamily LSO60_10250 PF00884 Sulfatase LSO60_10250 PF08019 Phosphoethanolamine transferase EptA/EptB LSO60_10255 PF00486 Transcriptional regulatory protein, C terminal LSO60_10255 PF00072 Response regulator receiver domain LSO60_10260 PF08521 Two-component sensor kinase N-terminal LSO60_10260 PF00512 His Kinase A (phospho-acceptor) domain LSO60_10260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_10270 PF00561 alpha/beta hydrolase fold LSO60_10280 PF00881 Nitroreductase family LSO60_10285 PF00106 short chain dehydrogenase LSO60_10305 PF00005 ABC transporter LSO60_10310 PF01061 ABC-2 type transporter LSO60_10315 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LSO60_10315 PF14489 QueF-like protein LSO60_10325 PF01098 Cell cycle protein LSO60_10330 PF13406 Transglycosylase SLT domain LSO60_10335 PF03330 Lytic transglycolase LSO60_10335 PF05036 Sporulation related domain LSO60_10365 PF00889 Elongation factor TS LSO60_10370 PF00318 Ribosomal protein S2 LSO60_10375 PF00557 Metallopeptidase family M24 LSO60_10390 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LSO60_10395 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_10395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO60_10400 PF04055 Radical SAM superfamily LSO60_10405 PF13559 Domain of unknown function (DUF4129) LSO60_10405 PF01841 Transglutaminase-like superfamily LSO60_10405 PF11992 Domain of unknown function (DUF3488) LSO60_10420 PF07963 Prokaryotic N-terminal methylation motif LSO60_10420 PF00114 Pilin (bacterial filament) LSO60_10445 PF07963 Prokaryotic N-terminal methylation motif LSO60_10445 PF14245 Type IV pilin PilA LSO60_10455 PF00488 MutS domain V LSO60_10455 PF01624 MutS domain I LSO60_10455 PF05188 MutS domain II LSO60_10455 PF05190 MutS family domain IV LSO60_10455 PF05192 MutS domain III LSO60_10465 PF00037 4Fe-4S binding domain LSO60_10465 PF11953 Domain of unknown function (DUF3470) LSO60_10475 PF01596 O-methyltransferase LSO60_10485 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_10490 PF01205 Uncharacterized protein family UPF0029 LSO60_10500 PF00664 ABC transporter transmembrane region LSO60_10500 PF00005 ABC transporter LSO60_10500 PF03412 Peptidase C39 family LSO60_10505 PF02321 Outer membrane efflux protein LSO60_10525 PF00005 ABC transporter LSO60_10525 PF12399 Branched-chain amino acid ATP-binding cassette transporter LSO60_10530 PF03968 OstA-like protein LSO60_10545 PF01380 SIS domain LSO60_10545 PF00571 CBS domain LSO60_10550 PF09190 DALR domain LSO60_10550 PF01406 tRNA synthetases class I (C) catalytic domain LSO60_10560 PF13360 PQQ-like domain LSO60_10565 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LSO60_10570 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_10575 PF00005 ABC transporter LSO60_10580 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LSO60_10585 PF01966 HD domain LSO60_10590 PF01330 RuvA N terminal domain LSO60_10590 PF07499 RuvA, C-terminal domain LSO60_10595 PF17864 RuvB AAA lid domain LSO60_10595 PF05491 RuvB C-terminal winged helix domain LSO60_10595 PF05496 Holliday junction DNA helicase RuvB P-loop domain LSO60_10600 PF03061 Thioesterase superfamily LSO60_10605 PF01618 MotA/TolQ/ExbB proton channel family LSO60_10610 PF02472 Biopolymer transport protein ExbD/TolR LSO60_10620 PF04052 TolB amino-terminal domain LSO60_10620 PF07676 WD40-like Beta Propeller Repeat LSO60_10625 PF00691 OmpA family LSO60_10635 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LSO60_10640 PF00588 SpoU rRNA Methylase family LSO60_10640 PF08032 RNA 2'-O ribose methyltransferase substrate binding LSO60_10660 PF01590 GAF domain LSO60_10660 PF00563 EAL domain LSO60_10660 PF00990 Diguanylate cyclase, GGDEF domain LSO60_10660 PF00360 Phytochrome region LSO60_10665 PF01979 Amidohydrolase family LSO60_10670 PF00929 Exonuclease LSO60_10680 PF00324 Amino acid permease LSO60_10690 PF02634 FdhD/NarQ family LSO60_10695 PF00384 Molybdopterin oxidoreductase LSO60_10700 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LSO60_10700 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LSO60_10705 PF00271 Helicase conserved C-terminal domain LSO60_10705 PF11898 Domain of unknown function (DUF3418) LSO60_10705 PF00270 DEAD/DEAH box helicase LSO60_10705 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LSO60_10705 PF04408 Helicase associated domain (HA2) LSO60_10710 PF00578 AhpC/TSA family LSO60_10710 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO60_10730 PF13192 Thioredoxin domain LSO60_10730 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_10750 PF03883 Peroxide stress protein YaaA LSO60_10755 PF01546 Peptidase family M20/M25/M40 LSO60_10755 PF07687 Peptidase dimerisation domain LSO60_10765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LSO60_10770 PF00800 Prephenate dehydratase LSO60_10770 PF01817 Chorismate mutase type II LSO60_10770 PF01842 ACT domain LSO60_10785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_10785 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_10785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_10790 PF02566 OsmC-like protein LSO60_10810 PF07499 RuvA, C-terminal domain LSO60_10810 PF01330 RuvA N terminal domain LSO60_10815 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LSO60_10820 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LSO60_10825 PF13520 Amino acid permease LSO60_10830 PF03060 Nitronate monooxygenase LSO60_10835 PF05163 DinB family LSO60_10840 PF01207 Dihydrouridine synthase (Dus) LSO60_10845 PF07759 Protein of unknown function (DUF1615) LSO60_10855 PF00696 Amino acid kinase family LSO60_10855 PF01472 PUA domain LSO60_10860 PF01018 GTP1/OBG LSO60_10860 PF01926 50S ribosome-binding GTPase LSO60_10880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LSO60_10880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LSO60_10885 PF00892 EamA-like transporter family LSO60_10890 PF08212 Lipocalin-like domain LSO60_10895 PF17757 UvrB interaction domain LSO60_10895 PF04851 Type III restriction enzyme, res subunit LSO60_10895 PF02151 UvrB/uvrC motif LSO60_10895 PF12344 Ultra-violet resistance protein B LSO60_10895 PF00271 Helicase conserved C-terminal domain LSO60_10905 PF08448 PAS fold LSO60_10905 PF00990 Diguanylate cyclase, GGDEF domain LSO60_10910 PF00444 Ribosomal protein L36 LSO60_10920 PF00155 Aminotransferase class I and II LSO60_10925 PF01494 FAD binding domain LSO60_10930 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO60_10935 PF01557 Fumarylacetoacetate (FAA) hydrolase family LSO60_10940 PF07729 FCD domain LSO60_10940 PF00392 Bacterial regulatory proteins, gntR family LSO60_10955 PF00120 Glutamine synthetase, catalytic domain LSO60_10955 PF03951 Glutamine synthetase, beta-Grasp domain LSO60_10960 PF00892 EamA-like transporter family LSO60_10985 PF00694 Aconitase C-terminal domain LSO60_10985 PF00330 Aconitase family (aconitate hydratase) LSO60_10990 PF00285 Citrate synthase, C-terminal domain LSO60_11000 PF07729 FCD domain LSO60_11000 PF00392 Bacterial regulatory proteins, gntR family LSO60_11020 PF01037 Lrp/AsnC ligand binding domain LSO60_11070 PF00675 Insulinase (Peptidase family M16) LSO60_11070 PF05193 Peptidase M16 inactive domain LSO60_11075 PF00654 Voltage gated chloride channel LSO60_11080 PF02567 Phenazine biosynthesis-like protein LSO60_11085 PF00375 Sodium:dicarboxylate symporter family LSO60_11090 PF00180 Isocitrate/isopropylmalate dehydrogenase LSO60_11095 PF00849 RNA pseudouridylate synthase LSO60_11100 PF03971 Monomeric isocitrate dehydrogenase LSO60_11105 PF00576 HIUase/Transthyretin family LSO60_11120 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_11120 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO60_11125 PF00005 ABC transporter LSO60_11125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LSO60_11130 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_11130 PF12911 N-terminal TM domain of oligopeptide transport permease C LSO60_11135 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_11140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LSO60_11145 PF01464 Transglycosylase SLT domain LSO60_11145 PF01476 LysM domain LSO60_11145 PF01476 LysM domain LSO60_11145 PF01464 Transglycosylase SLT domain LSO60_11150 PF00929 Exonuclease LSO60_11160 PF09297 NADH pyrophosphatase zinc ribbon domain LSO60_11160 PF00293 NUDIX domain LSO60_11170 PF04972 BON domain LSO60_11175 PF02021 Uncharacterised protein family UPF0102 LSO60_11180 PF04348 LppC putative lipoprotein LSO60_11185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LSO60_11195 PF01494 FAD binding domain LSO60_11200 PF01494 FAD binding domain LSO60_11205 PF05195 Aminopeptidase P, N-terminal domain LSO60_11205 PF00557 Metallopeptidase family M24 LSO60_11210 PF03695 Uncharacterised protein family (UPF0149) LSO60_11235 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LSO60_11235 PF00890 FAD binding domain LSO60_11245 PF00561 alpha/beta hydrolase fold LSO60_11250 PF12833 Helix-turn-helix domain LSO60_11250 PF02311 AraC-like ligand binding domain LSO60_11255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO60_11255 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_11285 PF00593 TonB dependent receptor LSO60_11285 PF07715 TonB-dependent Receptor Plug Domain LSO60_11305 PF00892 EamA-like transporter family LSO60_11320 PF00355 Rieske [2Fe-2S] domain LSO60_11320 PF01266 FAD dependent oxidoreductase LSO60_11325 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_11325 PF18113 Rubredoxin binding C-terminal domain LSO60_11335 PF00171 Aldehyde dehydrogenase family LSO60_11340 PF00355 Rieske [2Fe-2S] domain LSO60_11340 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LSO60_11345 PF02028 BCCT, betaine/carnitine/choline family transporter LSO60_11350 PF03466 LysR substrate binding domain LSO60_11350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_11365 PF00144 Beta-lactamase LSO60_11370 PF08240 Alcohol dehydrogenase GroES-like domain LSO60_11370 PF00107 Zinc-binding dehydrogenase LSO60_11390 PF00561 alpha/beta hydrolase fold LSO60_11400 PF00376 MerR family regulatory protein LSO60_11400 PF09278 MerR, DNA binding LSO60_11405 PF03989 DNA gyrase C-terminal domain, beta-propeller LSO60_11405 PF00521 DNA gyrase/topoisomerase IV, subunit A LSO60_11410 PF01012 Electron transfer flavoprotein domain LSO60_11410 PF00766 Electron transfer flavoprotein FAD-binding domain LSO60_11415 PF01012 Electron transfer flavoprotein domain LSO60_11420 PF02899 Phage integrase, N-terminal SAM-like domain LSO60_11420 PF00589 Phage integrase family LSO60_11425 PF00561 alpha/beta hydrolase fold LSO60_11430 PF01678 Diaminopimelate epimerase LSO60_11435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LSO60_11435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LSO60_11445 PF00324 Amino acid permease LSO60_11450 PF18073 Rubredoxin metal binding domain LSO60_11460 PF00152 tRNA synthetases class II (D, K and N) LSO60_11465 PF11890 Domain of unknown function (DUF3410) LSO60_11465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO60_11465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO60_11470 PF04072 Leucine carboxyl methyltransferase LSO60_11475 PF00743 Flavin-binding monooxygenase-like LSO60_11480 PF00106 short chain dehydrogenase LSO60_11490 PF17932 Tetracyclin repressor-like, C-terminal domain LSO60_11490 PF00440 Bacterial regulatory proteins, tetR family LSO60_11500 PF07690 Major Facilitator Superfamily LSO60_11505 PF00378 Enoyl-CoA hydratase/isomerase LSO60_11510 PF00171 Aldehyde dehydrogenase family LSO60_11520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_11520 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_11520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_11525 PF03573 outer membrane porin, OprD family LSO60_11535 PF07715 TonB-dependent Receptor Plug Domain LSO60_11535 PF00593 TonB dependent receptor LSO60_11545 PF08281 Sigma-70, region 4 LSO60_11545 PF04542 Sigma-70 region 2 LSO60_11550 PF01126 Heme oxygenase LSO60_11570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_11570 PF03466 LysR substrate binding domain LSO60_11575 PF01144 Coenzyme A transferase LSO60_11580 PF01144 Coenzyme A transferase LSO60_11585 PF02667 Short chain fatty acid transporter LSO60_11590 PF00108 Thiolase, N-terminal domain LSO60_11590 PF02803 Thiolase, C-terminal domain LSO60_11595 PF00005 ABC transporter LSO60_11595 PF03459 TOBE domain LSO60_11600 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_11620 PF00083 Sugar (and other) transporter LSO60_11625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_11625 PF03466 LysR substrate binding domain LSO60_11630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_11630 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_11630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_11635 PF03328 HpcH/HpaI aldolase/citrate lyase family LSO60_11645 PF02515 CoA-transferase family III LSO60_11650 PF16078 2-oxoglutarate dehydrogenase N-terminus LSO60_11650 PF16870 2-oxoglutarate dehydrogenase C-terminal LSO60_11650 PF02779 Transketolase, pyrimidine binding domain LSO60_11650 PF00676 Dehydrogenase E1 component LSO60_11665 PF12697 Alpha/beta hydrolase family LSO60_11670 PF03466 LysR substrate binding domain LSO60_11670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_11685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO60_11685 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_11690 PF00892 EamA-like transporter family LSO60_11695 PF03466 LysR substrate binding domain LSO60_11695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_11700 PF00764 Arginosuccinate synthase LSO60_11715 PF11638 DnaA N-terminal domain LSO60_11715 PF08299 Bacterial dnaA protein helix-turn-helix LSO60_11715 PF00308 Bacterial dnaA protein LSO60_11720 PF01594 AI-2E family transporter LSO60_11725 PF02769 AIR synthase related protein, C-terminal domain LSO60_11725 PF00586 AIR synthase related protein, N-terminal domain LSO60_11730 PF00551 Formyl transferase LSO60_11740 PF13356 Arm DNA-binding domain LSO60_11740 PF00589 Phage integrase family LSO60_11750 PF12102 Domain of unknown function (DUF3578) LSO60_11750 PF07728 AAA domain (dynein-related subfamily) LSO60_11770 PF02384 N-6 DNA Methylase LSO60_11820 PF01434 Peptidase family M41 LSO60_11820 PF06480 FtsH Extracellular LSO60_11820 PF17862 AAA+ lid domain LSO60_11820 PF00004 ATPase family associated with various cellular activities (AAA) LSO60_11910 PF00692 dUTPase LSO60_11925 PF01048 Phosphorylase superfamily LSO60_11930 PF10609 NUBPL iron-transfer P-loop NTPase LSO60_11940 PF09334 tRNA synthetases class I (M) LSO60_11940 PF01588 Putative tRNA binding domain LSO60_11950 PF16123 Hydroxyacylglutathione hydrolase C-terminus LSO60_11950 PF00753 Metallo-beta-lactamase superfamily LSO60_11960 PF03171 2OG-Fe(II) oxygenase superfamily LSO60_11960 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LSO60_11965 PF00860 Permease family LSO60_11970 PF01979 Amidohydrolase family LSO60_11985 PF01810 LysE type translocator LSO60_11990 PF08241 Methyltransferase domain LSO60_12005 PF13533 Biotin-lipoyl like LSO60_12010 PF00291 Pyridoxal-phosphate dependent enzyme LSO60_12025 PF05552 Conserved TM helix LSO60_12040 PF00175 Oxidoreductase NAD-binding domain LSO60_12040 PF00970 Oxidoreductase FAD-binding domain LSO60_12045 PF03466 LysR substrate binding domain LSO60_12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_12050 PF07715 TonB-dependent Receptor Plug Domain LSO60_12050 PF00593 TonB dependent receptor LSO60_12055 PF00593 TonB dependent receptor LSO60_12055 PF07715 TonB-dependent Receptor Plug Domain LSO60_12065 PF00361 Proton-conducting membrane transporter LSO60_12070 PF00361 Proton-conducting membrane transporter LSO60_12075 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LSO60_12075 PF00361 Proton-conducting membrane transporter LSO60_12080 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LSO60_12085 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LSO60_12090 PF12838 4Fe-4S dicluster domain LSO60_12095 PF00146 NADH dehydrogenase LSO60_12100 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LSO60_12100 PF00384 Molybdopterin oxidoreductase LSO60_12100 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LSO60_12105 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LSO60_12105 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LSO60_12105 PF10531 SLBB domain LSO60_12115 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LSO60_12115 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LSO60_12120 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LSO60_12125 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LSO60_12135 PF00512 His Kinase A (phospho-acceptor) domain LSO60_12135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_12135 PF00672 HAMP domain LSO60_12140 PF00486 Transcriptional regulatory protein, C terminal LSO60_12140 PF00072 Response regulator receiver domain LSO60_12145 PF00317 Ribonucleotide reductase, all-alpha domain LSO60_12145 PF02867 Ribonucleotide reductase, barrel domain LSO60_12145 PF03477 ATP cone domain LSO60_12155 PF00268 Ribonucleotide reductase, small chain LSO60_12170 PF00665 Integrase core domain LSO60_12170 PF13936 Helix-turn-helix domain LSO60_12235 PF00491 Arginase family LSO60_12240 PF01979 Amidohydrolase family LSO60_12245 PF00324 Amino acid permease LSO60_12250 PF00221 Aromatic amino acid lyase LSO60_12255 PF01175 Urocanase Rossmann-like domain LSO60_12255 PF17392 Urocanase C-terminal domain LSO60_12255 PF17391 Urocanase N-terminal domain LSO60_12265 PF07702 UTRA domain LSO60_12265 PF00392 Bacterial regulatory proteins, gntR family LSO60_12270 PF04966 Carbohydrate-selective porin, OprB family LSO60_12275 PF00962 Adenosine/AMP deaminase LSO60_12280 PF08378 Nuclease-related domain LSO60_12285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LSO60_12285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LSO60_12290 PF00893 Small Multidrug Resistance protein LSO60_12310 PF00394 Multicopper oxidase LSO60_12310 PF07731 Multicopper oxidase LSO60_12310 PF07732 Multicopper oxidase LSO60_12325 PF00834 Ribulose-phosphate 3 epimerase family LSO60_12340 PF05987 Bacterial protein of unknown function (DUF898) LSO60_12345 PF00756 Putative esterase LSO60_12355 PF04445 Putative SAM-dependent methyltransferase LSO60_12360 PF02673 Bacitracin resistance protein BacA LSO60_12365 PF00814 Glycoprotease family LSO60_12370 PF00132 Bacterial transferase hexapeptide (six repeats) LSO60_12375 PF00293 NUDIX domain LSO60_12415 PF00425 chorismate binding enzyme LSO60_12415 PF04715 Anthranilate synthase component I, N terminal region LSO60_12420 PF00155 Aminotransferase class I and II LSO60_12425 PF00815 Histidinol dehydrogenase LSO60_12435 PF01634 ATP phosphoribosyltransferase LSO60_12440 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LSO60_12445 PF01722 BolA-like protein LSO60_12450 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LSO60_12455 PF04552 Sigma-54, DNA binding domain LSO60_12455 PF00309 Sigma-54 factor, Activator interacting domain (AID) LSO60_12455 PF04963 Sigma-54 factor, core binding domain LSO60_12500 PF00795 Carbon-nitrogen hydrolase LSO60_12505 PF01047 MarR family LSO60_12510 PF00437 Type II/IV secretion system protein LSO60_12530 PF01367 5'-3' exonuclease, C-terminal SAM fold LSO60_12530 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LSO60_12530 PF00476 DNA polymerase family A LSO60_12530 PF01612 3'-5' exonuclease LSO60_12535 PF02325 YGGT family LSO60_12540 PF03807 NADP oxidoreductase coenzyme F420-dependent LSO60_12540 PF14748 Pyrroline-5-carboxylate reductase dimerisation LSO60_12545 PF01171 PP-loop family LSO60_12545 PF09179 TilS substrate binding domain LSO60_12545 PF11734 TilS substrate C-terminal domain LSO60_12550 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LSO60_12555 PF02541 Ppx/GppA phosphatase family LSO60_12560 PF00085 Thioredoxin LSO60_12565 PF07497 Rho termination factor, RNA-binding domain LSO60_12565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO60_12565 PF07498 Rho termination factor, N-terminal domain LSO60_12575 PF00216 Bacterial DNA-binding protein LSO60_12580 PF03483 B3/4 domain LSO60_12580 PF03484 tRNA synthetase B5 domain LSO60_12580 PF03147 Ferredoxin-fold anticodon binding domain LSO60_12580 PF01588 Putative tRNA binding domain LSO60_12580 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LSO60_12585 PF01409 tRNA synthetases class II core domain (F) LSO60_12585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LSO60_12605 PF00453 Ribosomal protein L20 LSO60_12610 PF01632 Ribosomal protein L35 LSO60_12625 PF09335 SNARE associated Golgi protein LSO60_12630 PF00043 Glutathione S-transferase, C-terminal domain LSO60_12630 PF02798 Glutathione S-transferase, N-terminal domain LSO60_12635 PF00707 Translation initiation factor IF-3, C-terminal domain LSO60_12635 PF05198 Translation initiation factor IF-3, N-terminal domain LSO60_12640 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LSO60_12640 PF03129 Anticodon binding domain LSO60_12640 PF02824 TGS domain LSO60_12640 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO60_12645 PF13193 AMP-binding enzyme C-terminal domain LSO60_12645 PF00501 AMP-binding enzyme LSO60_12650 PF04751 Protein of unknown function (DUF615) LSO60_12655 PF00381 PTS HPr component phosphorylation site LSO60_12660 PF03668 P-loop ATPase protein family LSO60_12665 PF02569 Pantoate-beta-alanine ligase LSO60_12670 PF02548 Ketopantoate hydroxymethyltransferase LSO60_12675 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LSO60_12680 PF01743 Poly A polymerase head domain LSO60_12680 PF12626 Polymerase A arginine-rich C-terminus LSO60_12680 PF12627 Probable RNA and SrmB- binding site of polymerase A LSO60_12690 PF03819 MazG nucleotide pyrophosphohydrolase domain LSO60_12700 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LSO60_12705 PF04237 YjbR LSO60_12710 PF00486 Transcriptional regulatory protein, C terminal LSO60_12710 PF00072 Response regulator receiver domain LSO60_12715 PF00512 His Kinase A (phospho-acceptor) domain LSO60_12715 PF00672 HAMP domain LSO60_12715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_12725 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_12725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_12725 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO60_12725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_12730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_12730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_12730 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_12730 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO60_12735 PF06146 Phosphate-starvation-inducible E LSO60_12765 PF00593 TonB dependent receptor LSO60_12765 PF07715 TonB-dependent Receptor Plug Domain LSO60_12770 PF07715 TonB-dependent Receptor Plug Domain LSO60_12770 PF00593 TonB dependent receptor LSO60_12780 PF01336 OB-fold nucleic acid binding domain LSO60_12780 PF00152 tRNA synthetases class II (D, K and N) LSO60_12780 PF02938 GAD domain LSO60_12795 PF01501 Glycosyl transferase family 8 LSO60_12795 PF08437 Glycosyl transferase family 8 C-terminal LSO60_12800 PF09612 Bacterial protein of unknown function (HtrL_YibB) LSO60_12810 PF13439 Glycosyltransferase Family 4 LSO60_12810 PF00534 Glycosyl transferases group 1 LSO60_12820 PF13439 Glycosyltransferase Family 4 LSO60_12820 PF00534 Glycosyl transferases group 1 LSO60_12825 PF01522 Polysaccharide deacetylase LSO60_12835 PF01063 Amino-transferase class IV LSO60_12840 PF03710 Glutamate-ammonia ligase adenylyltransferase LSO60_12840 PF08335 GlnD PII-uridylyltransferase LSO60_12845 PF07689 KaiB domain LSO60_12845 PF00512 His Kinase A (phospho-acceptor) domain LSO60_12845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_12850 PF00990 Diguanylate cyclase, GGDEF domain LSO60_12850 PF07694 5TMR of 5TMR-LYT LSO60_12865 PF02233 NAD(P) transhydrogenase beta subunit LSO60_12870 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LSO60_12875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LSO60_12875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LSO60_12880 PF00892 EamA-like transporter family LSO60_12885 PF00376 MerR family regulatory protein LSO60_12885 PF09278 MerR, DNA binding LSO60_12895 PF07690 Major Facilitator Superfamily LSO60_12905 PF01545 Cation efflux family LSO60_12915 PF13737 Transposase DDE domain LSO60_12970 PF08681 Protein of unknown function (DUF1778) LSO60_12975 PF00589 Phage integrase family LSO60_12975 PF13356 Arm DNA-binding domain LSO60_12985 PF02547 Queuosine biosynthesis protein LSO60_12995 PF04011 LemA family LSO60_13000 PF01702 Queuine tRNA-ribosyltransferase LSO60_13005 PF02699 Preprotein translocase subunit LSO60_13010 PF02355 Protein export membrane protein LSO60_13010 PF13721 SecD export protein N-terminal TM region LSO60_13010 PF07549 SecD/SecF GG Motif LSO60_13015 PF02355 Protein export membrane protein LSO60_13015 PF07549 SecD/SecF GG Motif LSO60_13035 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO60_13035 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO60_13050 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO60_13050 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO60_13060 PF01494 FAD binding domain LSO60_13080 PF00221 Aromatic amino acid lyase LSO60_13095 PF07977 FabA-like domain LSO60_13105 PF00550 Phosphopantetheine attachment site LSO60_13110 PF00550 Phosphopantetheine attachment site LSO60_13125 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LSO60_13125 PF01926 50S ribosome-binding GTPase LSO60_13130 PF13360 PQQ-like domain LSO60_13140 PF03129 Anticodon binding domain LSO60_13140 PF13393 Histidyl-tRNA synthetase LSO60_13145 PF04551 GcpE protein LSO60_13150 PF13464 Domain of unknown function (DUF4115) LSO60_13160 PF04055 Radical SAM superfamily LSO60_13165 PF00334 Nucleoside diphosphate kinase LSO60_13170 PF04384 Iron-sulphur cluster assembly LSO60_13175 PF01569 PAP2 superfamily LSO60_13180 PF00534 Glycosyl transferases group 1 LSO60_13180 PF13439 Glycosyltransferase Family 4 LSO60_13185 PF00595 PDZ domain LSO60_13185 PF11818 C-terminal domain of tail specific protease (DUF3340) LSO60_13185 PF03572 Peptidase family S41 LSO60_13185 PF17804 Tail specific protease N-terminal domain LSO60_13190 PF00933 Glycosyl hydrolase family 3 N terminal domain LSO60_13200 PF00561 alpha/beta hydrolase fold LSO60_13205 PF00171 Aldehyde dehydrogenase family LSO60_13210 PF00871 Acetokinase family LSO60_13215 PF07085 DRTGG domain LSO60_13215 PF01515 Phosphate acetyl/butaryl transferase LSO60_13220 PF00857 Isochorismatase family LSO60_13230 PF05681 Fumarate hydratase (Fumerase) LSO60_13230 PF05683 Fumarase C-terminus LSO60_13235 PF00929 Exonuclease LSO60_13240 PF03193 RsgA GTPase LSO60_13250 PF00462 Glutaredoxin LSO60_13255 PF02556 Preprotein translocase subunit SecB LSO60_13260 PF07361 Cytochrome b562 LSO60_13265 PF04127 DNA / pantothenate metabolism flavoprotein LSO60_13265 PF02441 Flavoprotein LSO60_13270 PF04002 RadC-like JAB domain LSO60_13275 PF01062 Bestrophin, RFP-TM, chloride channel LSO60_13280 PF00248 Aldo/keto reductase family LSO60_13285 PF03466 LysR substrate binding domain LSO60_13285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_13295 PF04279 Intracellular septation protein A LSO60_13300 PF03795 YCII-related domain LSO60_13310 PF01266 FAD dependent oxidoreductase LSO60_13310 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LSO60_13320 PF01507 Phosphoadenosine phosphosulfate reductase family LSO60_13325 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LSO60_13325 PF06974 Protein of unknown function (DUF1298) LSO60_13335 PF10150 Ribonuclease E/G family LSO60_13335 PF00575 S1 RNA binding domain LSO60_13340 PF02545 Maf-like protein LSO60_13350 PF04085 rod shape-determining protein MreC LSO60_13360 PF02686 Glu-tRNAGln amidotransferase C subunit LSO60_13365 PF01425 Amidase LSO60_13370 PF02637 GatB domain LSO60_13370 PF02934 GatB/GatE catalytic domain LSO60_13410 PF03466 LysR substrate binding domain LSO60_13410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_13425 PF05992 SbmA/BacA-like family LSO60_13445 PF13098 Thioredoxin-like domain LSO60_13445 PF10411 Disulfide bond isomerase protein N-terminus LSO60_13460 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO60_13465 PF00593 TonB dependent receptor LSO60_13465 PF07715 TonB-dependent Receptor Plug Domain LSO60_13470 PF02245 Methylpurine-DNA glycosylase (MPG) LSO60_13475 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LSO60_13475 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LSO60_13475 PF06827 Zinc finger found in FPG and IleRS LSO60_13480 PF00639 PPIC-type PPIASE domain LSO60_13480 PF09312 SurA N-terminal domain LSO60_13490 PF01741 Large-conductance mechanosensitive channel, MscL LSO60_13495 PF00679 Elongation factor G C-terminus LSO60_13495 PF00009 Elongation factor Tu GTP binding domain LSO60_13495 PF03144 Elongation factor Tu domain 2 LSO60_13500 PF00860 Permease family LSO60_13505 PF05175 Methyltransferase small domain LSO60_13505 PF08468 Methyltransferase small domain N-terminal LSO60_13510 PF00324 Amino acid permease LSO60_13515 PF01139 tRNA-splicing ligase RtcB LSO60_13530 PF01627 Hpt domain LSO60_13530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_13530 PF07194 P2 response regulator binding domain LSO60_13530 PF01584 CheW-like domain LSO60_13530 PF02895 Signal transducing histidine kinase, homodimeric domain LSO60_13535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LSO60_13535 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LSO60_13540 PF01584 CheW-like domain LSO60_13545 PF00072 Response regulator receiver domain LSO60_13550 PF00072 Response regulator receiver domain LSO60_13565 PF00873 AcrB/AcrD/AcrF family LSO60_13570 PF04073 Aminoacyl-tRNA editing domain LSO60_13570 PF03129 Anticodon binding domain LSO60_13570 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO60_13580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO60_13580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO60_13585 PF01011 PQQ enzyme repeat LSO60_13590 PF04966 Carbohydrate-selective porin, OprB family LSO60_13595 PF02515 CoA-transferase family III LSO60_13600 PF12833 Helix-turn-helix domain LSO60_13600 PF02311 AraC-like ligand binding domain LSO60_13610 PF01202 Shikimate kinase LSO60_13615 PF02803 Thiolase, C-terminal domain LSO60_13615 PF00108 Thiolase, N-terminal domain LSO60_13620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO60_13620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO60_13620 PF00378 Enoyl-CoA hydratase/isomerase LSO60_13630 PF01734 Patatin-like phospholipase LSO60_13640 PF13673 Acetyltransferase (GNAT) domain LSO60_13650 PF03006 Haemolysin-III related LSO60_13655 PF07690 Major Facilitator Superfamily LSO60_13655 PF00083 Sugar (and other) transporter LSO60_13660 PF00149 Calcineurin-like phosphoesterase LSO60_13660 PF10518 TAT (twin-arginine translocation) pathway signal sequence LSO60_13665 PF13091 PLD-like domain LSO60_13680 PF16360 GTP-binding GTPase Middle Region LSO60_13680 PF01926 50S ribosome-binding GTPase LSO60_13680 PF13167 GTP-binding GTPase N-terminal LSO60_13700 PF00149 Calcineurin-like phosphoesterase LSO60_13705 PF00398 Ribosomal RNA adenine dimethylase LSO60_13710 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LSO60_13715 PF00572 Ribosomal protein L13 LSO60_13720 PF00380 Ribosomal protein S9/S16 LSO60_13725 PF00043 Glutathione S-transferase, C-terminal domain LSO60_13725 PF02798 Glutathione S-transferase, N-terminal domain LSO60_13730 PF04386 Stringent starvation protein B LSO60_13790 PF17152 Periplasmic sensor domain LSO60_13790 PF00990 Diguanylate cyclase, GGDEF domain LSO60_13795 PF13488 Glycine zipper LSO60_13795 PF00691 OmpA family LSO60_13820 PF02445 Quinolinate synthetase A protein LSO60_13825 PF01960 ArgJ family LSO60_13835 PF07517 SecA DEAD-like domain LSO60_13835 PF07516 SecA Wing and Scaffold domain LSO60_13835 PF02810 SEC-C motif LSO60_13835 PF01043 SecA preprotein cross-linking domain LSO60_13840 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO60_13840 PF00578 AhpC/TSA family LSO60_13845 PF00753 Metallo-beta-lactamase superfamily LSO60_13860 PF02875 Mur ligase family, glutamate ligase domain LSO60_13860 PF08245 Mur ligase middle domain LSO60_13865 PF01039 Carboxyl transferase domain LSO60_13870 PF00290 Tryptophan synthase alpha chain LSO60_13895 PF00291 Pyridoxal-phosphate dependent enzyme LSO60_13900 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LSO60_13905 PF07715 TonB-dependent Receptor Plug Domain LSO60_13905 PF00593 TonB dependent receptor LSO60_13910 PF01923 Cobalamin adenosyltransferase LSO60_13930 PF02824 TGS domain LSO60_13930 PF04607 Region found in RelA / SpoT proteins LSO60_13930 PF13291 ACT domain LSO60_13935 PF05958 tRNA (Uracil-5-)-methyltransferase LSO60_13945 PF00291 Pyridoxal-phosphate dependent enzyme LSO60_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_13950 PF00672 HAMP domain LSO60_13950 PF00072 Response regulator receiver domain LSO60_13950 PF00512 His Kinase A (phospho-acceptor) domain LSO60_13950 PF01627 Hpt domain LSO60_13950 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LSO60_13955 PF00378 Enoyl-CoA hydratase/isomerase LSO60_13960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO60_13960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO60_13965 PF01261 Xylose isomerase-like TIM barrel LSO60_13990 PF07724 AAA domain (Cdc48 subfamily) LSO60_13990 PF06689 ClpX C4-type zinc finger LSO60_13990 PF10431 C-terminal, D2-small domain, of ClpB protein LSO60_13995 PF00574 Clp protease LSO60_14000 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO60_14000 PF05698 Bacterial trigger factor protein (TF) C-terminus LSO60_14000 PF05697 Bacterial trigger factor protein (TF) LSO60_14005 PF07715 TonB-dependent Receptor Plug Domain LSO60_14005 PF00593 TonB dependent receptor LSO60_14010 PF18331 PKHD-type hydroxylase C-terminal domain LSO60_14010 PF13640 2OG-Fe(II) oxygenase superfamily LSO60_14015 PF00682 HMGL-like LSO60_14015 PF08502 LeuA allosteric (dimerisation) domain LSO60_14020 PF00561 alpha/beta hydrolase fold LSO60_14025 PF07021 Methionine biosynthesis protein MetW LSO60_14025 PF00561 alpha/beta hydrolase fold LSO60_14035 PF01725 Ham1 family LSO60_14045 PF02416 mttA/Hcf106 family LSO60_14050 PF02416 mttA/Hcf106 family LSO60_14055 PF00902 Sec-independent protein translocase protein (TatC) LSO60_14070 PF01790 Prolipoprotein diacylglyceryl transferase LSO60_14085 PF00303 Thymidylate synthase LSO60_14090 PF00186 Dihydrofolate reductase LSO60_14105 PF01625 Peptide methionine sulfoxide reductase LSO60_14115 PF01618 MotA/TolQ/ExbB proton channel family LSO60_14125 PF01842 ACT domain LSO60_14125 PF00551 Formyl transferase LSO60_14130 PF08360 QacR-like protein, C-terminal region LSO60_14130 PF00440 Bacterial regulatory proteins, tetR family LSO60_14135 PF00171 Aldehyde dehydrogenase family LSO60_14140 PF00830 Ribosomal L28 family LSO60_14145 PF00471 Ribosomal protein L33 LSO60_14150 PF00999 Sodium/hydrogen exchanger family LSO60_14150 PF02254 TrkA-N domain LSO60_14170 PF13361 UvrD-like helicase C-terminal domain LSO60_14170 PF00580 UvrD/REP helicase N-terminal domain LSO60_14180 PF00360 Phytochrome region LSO60_14180 PF00563 EAL domain LSO60_14180 PF01590 GAF domain LSO60_14180 PF00990 Diguanylate cyclase, GGDEF domain LSO60_14195 PF08272 Topoisomerase I zinc-ribbon-like LSO60_14195 PF01131 DNA topoisomerase LSO60_14195 PF01751 Toprim domain LSO60_14195 PF01396 Topoisomerase DNA binding C4 zinc finger LSO60_14210 PF04102 SlyX LSO60_14215 PF12848 ABC transporter LSO60_14215 PF00005 ABC transporter LSO60_14215 PF16326 ABC transporter C-terminal domain LSO60_14225 PF03279 Bacterial lipid A biosynthesis acyltransferase LSO60_14230 PF13439 Glycosyltransferase Family 4 LSO60_14230 PF00534 Glycosyl transferases group 1 LSO60_14235 PF00375 Sodium:dicarboxylate symporter family LSO60_14250 PF01118 Semialdehyde dehydrogenase, NAD binding domain LSO60_14250 PF02774 Semialdehyde dehydrogenase, dimerisation domain LSO60_14270 PF01416 tRNA pseudouridine synthase LSO60_14285 PF01176 Translation initiation factor 1A / IF-1 LSO60_14295 PF00180 Isocitrate/isopropylmalate dehydrogenase LSO60_14305 PF00694 Aconitase C-terminal domain LSO60_14310 PF00330 Aconitase family (aconitate hydratase) LSO60_14320 PF03466 LysR substrate binding domain LSO60_14320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_14335 PF00293 NUDIX domain LSO60_14340 PF05524 PEP-utilising enzyme, N-terminal LSO60_14340 PF00391 PEP-utilising enzyme, mobile domain LSO60_14340 PF02896 PEP-utilising enzyme, TIM barrel domain LSO60_14340 PF01590 GAF domain LSO60_14345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO60_14345 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_14345 PF18158 Adaptive response protein AidB N-terminal domain LSO60_14355 PF00199 Catalase LSO60_14355 PF06628 Catalase-related immune-responsive LSO60_14360 PF13360 PQQ-like domain LSO60_14360 PF01011 PQQ enzyme repeat LSO60_14365 PF12706 Beta-lactamase superfamily domain LSO60_14370 PF01545 Cation efflux family LSO60_14370 PF16916 Dimerisation domain of Zinc Transporter LSO60_14375 PF03466 LysR substrate binding domain LSO60_14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_14390 PF00849 RNA pseudouridylate synthase LSO60_14390 PF01479 S4 domain LSO60_14395 PF00575 S1 RNA binding domain LSO60_14395 PF10150 Ribonuclease E/G family LSO60_14395 PF12111 Polyribonucleotide phosphorylase C terminal LSO60_14400 PF00501 AMP-binding enzyme LSO60_14400 PF13193 AMP-binding enzyme C-terminal domain LSO60_14415 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO60_14415 PF00578 AhpC/TSA family LSO60_14420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_14420 PF03466 LysR substrate binding domain LSO60_14425 PF00106 short chain dehydrogenase LSO60_14435 PF04542 Sigma-70 region 2 LSO60_14435 PF08281 Sigma-70, region 4 LSO60_14445 PF04055 Radical SAM superfamily LSO60_14445 PF06969 HemN C-terminal domain LSO60_14455 PF01554 MatE LSO60_14460 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO60_14460 PF02770 Acyl-CoA dehydrogenase, middle domain LSO60_14460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_14465 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO60_14465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO60_14470 PF03109 ABC1 family LSO60_14475 PF01197 Ribosomal protein L31 LSO60_14485 PF01613 Flavin reductase like domain LSO60_14490 PF01717 Cobalamin-independent synthase, Catalytic domain LSO60_14490 PF08267 Cobalamin-independent synthase, N-terminal domain LSO60_14515 PF03884 DNA gyrase inhibitor YacG LSO60_14525 PF00753 Metallo-beta-lactamase superfamily LSO60_14530 PF00762 Ferrochelatase LSO60_14540 PF01177 Asp/Glu/Hydantoin racemase LSO60_14560 PF01810 LysE type translocator LSO60_14565 PF01206 Sulfurtransferase TusA LSO60_14570 PF03471 Transporter associated domain LSO60_14570 PF00571 CBS domain LSO60_14575 PF00795 Carbon-nitrogen hydrolase LSO60_14580 PF01588 Putative tRNA binding domain LSO60_14590 PF07963 Prokaryotic N-terminal methylation motif LSO60_14590 PF08334 Type II secretion system (T2SS), protein G LSO60_14595 PF00482 Type II secretion system (T2SS), protein F LSO60_14600 PF00270 DEAD/DEAH box helicase LSO60_14600 PF00271 Helicase conserved C-terminal domain LSO60_14600 PF17764 3′ DNA-binding domain (3′BD) LSO60_14600 PF18074 Primosomal protein N C-terminal domain LSO60_14600 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LSO60_14605 PF00999 Sodium/hydrogen exchanger family LSO60_14605 PF02254 TrkA-N domain LSO60_14610 PF01430 Hsp33 protein LSO60_14615 PF01556 DnaJ C terminal domain LSO60_14615 PF00226 DnaJ domain LSO60_14630 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LSO60_14635 PF01544 CorA-like Mg2+ transporter protein LSO60_14640 PF04325 Protein of unknown function (DUF465) LSO60_14645 PF00575 S1 RNA binding domain LSO60_14645 PF03725 3' exoribonuclease family, domain 2 LSO60_14645 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LSO60_14645 PF00013 KH domain LSO60_14645 PF01138 3' exoribonuclease family, domain 1 LSO60_14650 PF00312 Ribosomal protein S15 LSO60_14655 PF00144 Beta-lactamase LSO60_14660 PF13538 UvrD-like helicase C-terminal domain LSO60_14665 PF12705 PD-(D/E)XK nuclease superfamily LSO60_14665 PF00580 UvrD/REP helicase N-terminal domain LSO60_14665 PF13361 UvrD-like helicase C-terminal domain LSO60_14670 PF17946 RecC C-terminal domain LSO60_14680 PF07690 Major Facilitator Superfamily LSO60_14685 PF03976 Polyphosphate kinase 2 (PPK2) LSO60_14695 PF01209 ubiE/COQ5 methyltransferase family LSO60_14705 PF03109 ABC1 family LSO60_14710 PF01494 FAD binding domain LSO60_14715 PF01502 Phosphoribosyl-AMP cyclohydrolase LSO60_14730 PF13244 Domain of unknown function (DUF4040) LSO60_14730 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LSO60_14730 PF00361 Proton-conducting membrane transporter LSO60_14730 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LSO60_14735 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LSO60_14740 PF00361 Proton-conducting membrane transporter LSO60_14745 PF01899 Na+/H+ ion antiporter subunit LSO60_14750 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LSO60_14755 PF03334 Na+/H+ antiporter subunit LSO60_14760 PF02033 Ribosome-binding factor A LSO60_14765 PF00009 Elongation factor Tu GTP binding domain LSO60_14765 PF11987 Translation-initiation factor 2 LSO60_14765 PF08364 Bacterial translation initiation factor IF-2 associated region LSO60_14765 PF04760 Translation initiation factor IF-2, N-terminal region LSO60_14770 PF13184 NusA-like KH domain LSO60_14770 PF08529 NusA N-terminal domain LSO60_14770 PF00575 S1 RNA binding domain LSO60_14775 PF02576 RimP N-terminal domain LSO60_14775 PF17384 RimP C-terminal SH3 domain LSO60_14795 PF03840 Preprotein translocase SecG subunit LSO60_14800 PF00121 Triosephosphate isomerase LSO60_14805 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LSO60_14805 PF00437 Type II/IV secretion system protein LSO60_14810 PF00482 Type II secretion system (T2SS), protein F LSO60_14820 PF06750 Bacterial Peptidase A24 N-terminal domain LSO60_14820 PF01478 Type IV leader peptidase family LSO60_14825 PF01121 Dephospho-CoA kinase LSO60_14835 PF00588 SpoU rRNA Methylase family LSO60_14835 PF08032 RNA 2'-O ribose methyltransferase substrate binding LSO60_14840 PF06865 Pyrimidine/purine nucleoside phosphorylase LSO60_14845 PF02463 RecF/RecN/SMC N terminal domain LSO60_14850 PF02622 Uncharacterized ACR, COG1678 LSO60_14855 PF03652 Holliday junction resolvase LSO60_14860 PF13533 Biotin-lipoyl like LSO60_14870 PF04632 Fusaric acid resistance protein family LSO60_14880 PF00664 ABC transporter transmembrane region LSO60_14880 PF00005 ABC transporter LSO60_14890 PF12833 Helix-turn-helix domain LSO60_14890 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LSO60_14890 PF02805 Metal binding domain of Ada LSO60_14890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LSO60_14895 PF01066 CDP-alcohol phosphatidyltransferase LSO60_14905 PF02151 UvrB/uvrC motif LSO60_14905 PF08459 UvrC Helix-hairpin-helix N-terminal LSO60_14905 PF01541 GIY-YIG catalytic domain LSO60_14920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO60_14920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO60_14920 PF00378 Enoyl-CoA hydratase/isomerase LSO60_14925 PF00108 Thiolase, N-terminal domain LSO60_14925 PF02803 Thiolase, C-terminal domain LSO60_14940 PF11846 Virulence factor membrane-bound polymerase, C-terminal LSO60_14940 PF04932 O-Antigen ligase LSO60_14940 PF15864 Protein glycosylation ligase LSO60_14950 PF04932 O-Antigen ligase LSO60_14950 PF15864 Protein glycosylation ligase LSO60_14950 PF11846 Virulence factor membrane-bound polymerase, C-terminal LSO60_14955 PF00114 Pilin (bacterial filament) LSO60_14955 PF07963 Prokaryotic N-terminal methylation motif LSO60_14965 PF04536 TPM domain LSO60_14970 PF04011 LemA family LSO60_14990 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LSO60_14990 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO60_14995 PF01645 Conserved region in glutamate synthase LSO60_14995 PF01493 GXGXG motif LSO60_14995 PF04898 Glutamate synthase central domain LSO60_14995 PF00310 Glutamine amidotransferases class-II LSO60_15005 PF01761 3-dehydroquinate synthase LSO60_15010 PF01202 Shikimate kinase LSO60_15015 PF11741 AMIN domain LSO60_15015 PF00263 Bacterial type II and III secretion system protein LSO60_15015 PF03958 Bacterial type II/III secretion system short domain LSO60_15015 PF07660 Secretin and TonB N terminus short domain LSO60_15025 PF04350 Pilus assembly protein, PilO LSO60_15030 PF05137 Fimbrial assembly protein (PilN) LSO60_15035 PF11104 Type IV pilus assembly protein PilM; LSO60_15040 PF17092 Penicillin-binding protein OB-like domain LSO60_15040 PF00912 Transglycosylase LSO60_15040 PF00905 Penicillin binding protein transpeptidase domain LSO60_15045 PF13847 Methyltransferase domain LSO60_15050 PF00953 Glycosyl transferase family 4 LSO60_15055 PF08245 Mur ligase middle domain LSO60_15055 PF01225 Mur ligase family, catalytic domain LSO60_15055 PF02875 Mur ligase family, glutamate ligase domain LSO60_15060 PF01225 Mur ligase family, catalytic domain LSO60_15060 PF02875 Mur ligase family, glutamate ligase domain LSO60_15060 PF08245 Mur ligase middle domain LSO60_15065 PF03717 Penicillin-binding Protein dimerisation domain LSO60_15065 PF00905 Penicillin binding protein transpeptidase domain LSO60_15075 PF01795 MraW methylase family LSO60_15090 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO60_15110 PF01545 Cation efflux family LSO60_15115 PF00873 AcrB/AcrD/AcrF family LSO60_15120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_15120 PF00529 HlyD membrane-fusion protein of T1SS LSO60_15140 PF00005 ABC transporter LSO60_15140 PF12848 ABC transporter LSO60_15145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO60_15145 PF00205 Thiamine pyrophosphate enzyme, central domain LSO60_15145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO60_15150 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO60_15155 PF00106 short chain dehydrogenase LSO60_15170 PF17674 HHH domain LSO60_15170 PF00575 S1 RNA binding domain LSO60_15170 PF09371 Tex-like protein N-terminal domain LSO60_15170 PF16921 Tex protein YqgF-like domain LSO60_15175 PF00072 Response regulator receiver domain LSO60_15175 PF00486 Transcriptional regulatory protein, C terminal LSO60_15180 PF00672 HAMP domain LSO60_15180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_15180 PF00512 His Kinase A (phospho-acceptor) domain LSO60_15185 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LSO60_15185 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LSO60_15190 PF00583 Acetyltransferase (GNAT) family LSO60_15220 PF00475 Imidazoleglycerol-phosphate dehydratase LSO60_15225 PF00117 Glutamine amidotransferase class-I LSO60_15235 PF00977 Histidine biosynthesis protein LSO60_15240 PF00501 AMP-binding enzyme LSO60_15240 PF13193 AMP-binding enzyme C-terminal domain LSO60_15240 PF00668 Condensation domain LSO60_15240 PF00550 Phosphopantetheine attachment site LSO60_15240 PF00975 Thioesterase domain LSO60_15245 PF00664 ABC transporter transmembrane region LSO60_15245 PF00005 ABC transporter LSO60_15250 PF01266 FAD dependent oxidoreductase LSO60_15255 PF00324 Amino acid permease LSO60_15275 PF01636 Phosphotransferase enzyme family LSO60_15280 PF00977 Histidine biosynthesis protein LSO60_15310 PF02705 K+ potassium transporter LSO60_15345 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LSO60_15345 PF04717 Type VI secretion system, phage-baseplate injector LSO60_15345 PF13296 Putative type VI secretion system Rhs element Vgr LSO60_15355 PF01144 Coenzyme A transferase LSO60_15360 PF01144 Coenzyme A transferase LSO60_15365 PF01494 FAD binding domain LSO60_15370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO60_15375 PF01557 Fumarylacetoacetate (FAA) hydrolase family LSO60_15385 PF00436 Single-strand binding protein family LSO60_15390 PF07690 Major Facilitator Superfamily LSO60_15400 PF03070 TENA/THI-4/PQQC family LSO60_15410 PF06942 GlpM protein LSO60_15425 PF17760 UvrA interaction domain LSO60_15425 PF17755 UvrA DNA-binding domain LSO60_15430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO60_15445 PF01593 Flavin containing amine oxidoreductase LSO60_15450 PF05726 Pirin C-terminal cupin domain LSO60_15450 PF02678 Pirin LSO60_15455 PF00857 Isochorismatase family LSO60_15465 PF13533 Biotin-lipoyl like LSO60_15485 PF03412 Peptidase C39 family LSO60_15485 PF00005 ABC transporter LSO60_15485 PF00664 ABC transporter transmembrane region LSO60_15490 PF02321 Outer membrane efflux protein LSO60_15525 PF00665 Integrase core domain LSO60_15525 PF13936 Helix-turn-helix domain LSO60_15530 PF03459 TOBE domain LSO60_15530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_15535 PF04055 Radical SAM superfamily LSO60_15535 PF06969 HemN C-terminal domain LSO60_15540 PF00324 Amino acid permease LSO60_15545 PF01042 Endoribonuclease L-PSP LSO60_15550 PF00842 Alanine racemase, C-terminal domain LSO60_15550 PF01168 Alanine racemase, N-terminal domain LSO60_15555 PF01266 FAD dependent oxidoreductase LSO60_15560 PF01037 Lrp/AsnC ligand binding domain LSO60_15565 PF00155 Aminotransferase class I and II LSO60_15575 PF01565 FAD binding domain LSO60_15575 PF09330 D-lactate dehydrogenase, membrane binding LSO60_15580 PF01070 FMN-dependent dehydrogenase LSO60_15585 PF07729 FCD domain LSO60_15585 PF00392 Bacterial regulatory proteins, gntR family LSO60_15590 PF02652 L-lactate permease LSO60_15595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_15595 PF03466 LysR substrate binding domain LSO60_15600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO60_15600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO60_15600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO60_15600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO60_15610 PF14052 Capsule assembly protein Wzi LSO60_15615 PF16363 GDP-mannose 4,6 dehydratase LSO60_15620 PF00342 Phosphoglucose isomerase LSO60_15625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LSO60_15625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LSO60_15625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LSO60_15630 PF00483 Nucleotidyl transferase LSO60_15635 PF02397 Bacterial sugar transferase LSO60_15640 PF00535 Glycosyl transferase family 2 LSO60_15645 PF00534 Glycosyl transferases group 1 LSO60_15650 PF00535 Glycosyl transferase family 2 LSO60_15660 PF00534 Glycosyl transferases group 1 LSO60_15660 PF13439 Glycosyltransferase Family 4 LSO60_15670 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LSO60_15670 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LSO60_15670 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LSO60_15675 PF02563 Polysaccharide biosynthesis/export protein LSO60_15675 PF10531 SLBB domain LSO60_15675 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LSO60_15680 PF01451 Low molecular weight phosphotyrosine protein phosphatase LSO60_15685 PF02706 Chain length determinant protein LSO60_15685 PF13614 AAA domain LSO60_15685 PF13807 G-rich domain on putative tyrosine kinase LSO60_15690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LSO60_15690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO60_15695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO60_15695 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LSO60_15700 PF03023 Lipid II flippase MurJ LSO60_15705 PF01510 N-acetylmuramoyl-L-alanine amidase LSO60_15710 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LSO60_15710 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LSO60_15720 PF05506 Domain of unknown function (DUF756) LSO60_15720 PF04185 Phosphoesterase family LSO60_15725 PF03725 3' exoribonuclease family, domain 2 LSO60_15725 PF01138 3' exoribonuclease family, domain 1 LSO60_15730 PF00487 Fatty acid desaturase LSO60_15735 PF00175 Oxidoreductase NAD-binding domain LSO60_15740 PF00440 Bacterial regulatory proteins, tetR family LSO60_15745 PF00440 Bacterial regulatory proteins, tetR family LSO60_15745 PF08360 QacR-like protein, C-terminal region LSO60_15750 PF01323 DSBA-like thioredoxin domain LSO60_15760 PF13419 Haloacid dehalogenase-like hydrolase LSO60_15765 PF00106 short chain dehydrogenase LSO60_15795 PF00696 Amino acid kinase family LSO60_15795 PF00583 Acetyltransferase (GNAT) family LSO60_15800 PF09084 NMT1/THI5 like LSO60_15805 PF09084 NMT1/THI5 like LSO60_15810 PF00296 Luciferase-like monooxygenase LSO60_15815 PF00528 Binding-protein-dependent transport system inner membrane component LSO60_15820 PF00005 ABC transporter LSO60_15825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO60_15825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO60_15830 PF00860 Permease family LSO60_15835 PF01613 Flavin reductase like domain LSO60_15840 PF01042 Endoribonuclease L-PSP LSO60_15845 PF00857 Isochorismatase family LSO60_15850 PF00296 Luciferase-like monooxygenase LSO60_15855 PF08362 YcdC-like protein, C-terminal region LSO60_15855 PF00440 Bacterial regulatory proteins, tetR family LSO60_15860 PF12697 Alpha/beta hydrolase family LSO60_15875 PF06574 FAD synthetase LSO60_15875 PF01687 Riboflavin kinase LSO60_15880 PF08264 Anticodon-binding domain of tRNA LSO60_15880 PF00133 tRNA synthetases class I (I, L, M and V) LSO60_15880 PF06827 Zinc finger found in FPG and IleRS LSO60_15885 PF01252 Signal peptidase (SPase) II LSO60_15890 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO60_15910 PF00691 OmpA family LSO60_15910 PF01389 OmpA-like transmembrane domain LSO60_15920 PF06744 Type VI secretion protein IcmF C-terminal LSO60_15920 PF14331 ImcF-related N-terminal domain LSO60_15920 PF06761 Intracellular multiplication and human macrophage-killing LSO60_15935 PF05947 Type VI secretion system, TssF LSO60_15950 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LSO60_15955 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LSO60_15965 PF17871 AAA lid domain LSO60_15965 PF07724 AAA domain (Cdc48 subfamily) LSO60_15965 PF10431 C-terminal, D2-small domain, of ClpB protein LSO60_15965 PF00004 ATPase family associated with various cellular activities (AAA) LSO60_15970 PF06812 ImpA, N-terminal, type VI secretion system LSO60_15975 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LSO60_16040 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LSO60_16045 PF07859 alpha/beta hydrolase fold LSO60_16065 PF03466 LysR substrate binding domain LSO60_16065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_16070 PF01025 GrpE LSO60_16075 PF00012 Hsp70 protein LSO60_16090 PF13406 Transglycosylase SLT domain LSO60_16095 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LSO60_16095 PF02222 ATP-grasp domain LSO60_16100 PF00731 AIR carboxylase LSO60_16110 PF08245 Mur ligase middle domain LSO60_16110 PF01225 Mur ligase family, catalytic domain LSO60_16110 PF02875 Mur ligase family, glutamate ligase domain LSO60_16135 PF03741 Integral membrane protein TerC family LSO60_16145 PF01979 Amidohydrolase family LSO60_16150 PF00156 Phosphoribosyl transferase domain LSO60_16160 PF10411 Disulfide bond isomerase protein N-terminus LSO60_16160 PF13098 Thioredoxin-like domain LSO60_16165 PF13340 Putative transposase of IS4/5 family (DUF4096) LSO60_16170 PF01926 50S ribosome-binding GTPase LSO60_16170 PF12631 MnmE helical domain LSO60_16170 PF10396 GTP-binding protein TrmE N-terminus LSO60_16175 PF02096 60Kd inner membrane protein LSO60_16175 PF14849 YidC periplasmic domain LSO60_16180 PF01809 Putative membrane protein insertion efficiency factor LSO60_16185 PF00825 Ribonuclease P LSO60_16190 PF00468 Ribosomal protein L34 LSO60_16200 PF01435 Peptidase family M48 LSO60_16380 PF00580 UvrD/REP helicase N-terminal domain LSO60_16380 PF13361 UvrD-like helicase C-terminal domain LSO60_16410 PF13614 AAA domain LSO60_16415 PF17762 HTH domain found in ParB protein LSO60_16415 PF02195 ParB-like nuclease domain LSO60_16430 PF00437 Type II/IV secretion system protein LSO60_16590 PF00533 BRCA1 C Terminus (BRCT) domain LSO60_16590 PF01653 NAD-dependent DNA ligase adenylation domain LSO60_16590 PF03120 NAD-dependent DNA ligase OB-fold domain LSO60_16590 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LSO60_16590 PF12826 Helix-hairpin-helix motif LSO60_16605 PF13495 Phage integrase, N-terminal SAM-like domain LSO60_16605 PF00589 Phage integrase family LSO60_16615 PF00893 Small Multidrug Resistance protein LSO60_16715 PF13007 Transposase C of IS166 homeodomain LSO60_16715 PF03050 Transposase IS66 family LSO60_16715 PF13005 zinc-finger binding domain of transposase IS66 LSO60_16715 PF13817 IS66 C-terminal element LSO60_16790 PF00717 Peptidase S24-like LSO60_16795 PF13438 Domain of unknown function (DUF4113) LSO60_16795 PF00817 impB/mucB/samB family LSO60_16795 PF11799 impB/mucB/samB family C-terminal domain LSO60_16795 PF11798 IMS family HHH motif LSO60_16805 PF00589 Phage integrase family LSO60_16805 PF13495 Phage integrase, N-terminal SAM-like domain LSO60_16820 PF00893 Small Multidrug Resistance protein LSO60_16825 PF00809 Pterin binding enzyme LSO60_16890 PF13936 Helix-turn-helix domain LSO60_16890 PF00665 Integrase core domain LSO60_16895 PF01636 Phosphotransferase enzyme family LSO60_16900 PF13936 Helix-turn-helix domain LSO60_16900 PF00665 Integrase core domain LSO60_16920 PF00313 'Cold-shock' DNA-binding domain LSO60_16960 PF17841 BID domain of Bartonella effector protein (Bep) LSO60_16960 PF02661 Fic/DOC family LSO60_17010 PF13737 Transposase DDE domain LSO60_17040 PF00271 Helicase conserved C-terminal domain LSO60_17040 PF12137 RNA polymerase recycling family C-terminal LSO60_17040 PF00176 SNF2 family N-terminal domain LSO60_17040 PF18339 RapA N-terminal Tudor like domain 1 LSO60_17040 PF18337 RapA N-terminal Tudor like domain LSO60_17090 PF00565 Staphylococcal nuclease homologue LSO60_17100 PF01555 DNA methylase LSO60_17105 PF04851 Type III restriction enzyme, res subunit LSO60_17150 PF01131 DNA topoisomerase LSO60_17150 PF01751 Toprim domain LSO60_17150 PF01396 Topoisomerase DNA binding C4 zinc finger LSO60_17310 PF00962 Adenosine/AMP deaminase LSO60_17320 PF03050 Transposase IS66 family LSO60_17320 PF13817 IS66 C-terminal element LSO60_17320 PF13007 Transposase C of IS166 homeodomain LSO60_17320 PF13005 zinc-finger binding domain of transposase IS66 LSO60_17365 PF02796 Helix-turn-helix domain of resolvase LSO60_17365 PF00239 Resolvase, N terminal domain LSO60_17375 PF05973 Phage derived protein Gp49-like (DUF891) LSO60_17380 PF01381 Helix-turn-helix LSO60_17395 PF00916 Sulfate permease family LSO60_17395 PF01740 STAS domain LSO60_17405 PF05973 Phage derived protein Gp49-like (DUF891) LSO60_17410 PF01381 Helix-turn-helix LSO60_17440 PF00005 ABC transporter LSO60_17440 PF12848 ABC transporter LSO60_17445 PF01636 Phosphotransferase enzyme family LSO60_17450 PF02796 Helix-turn-helix domain of resolvase LSO60_17450 PF00239 Resolvase, N terminal domain LSO60_17460 PF00512 His Kinase A (phospho-acceptor) domain LSO60_17460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_17460 PF00672 HAMP domain LSO60_17465 PF00072 Response regulator receiver domain LSO60_17465 PF00486 Transcriptional regulatory protein, C terminal LSO60_17470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_17470 PF00529 HlyD membrane-fusion protein of T1SS LSO60_17475 PF00873 AcrB/AcrD/AcrF family LSO60_17480 PF02321 Outer membrane efflux protein LSO60_17485 PF07690 Major Facilitator Superfamily LSO60_17490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_17490 PF00512 His Kinase A (phospho-acceptor) domain LSO60_17490 PF16736 Single Cache-like LSO60_17490 PF00989 PAS fold LSO60_17525 PF00672 HAMP domain LSO60_17525 PF00512 His Kinase A (phospho-acceptor) domain LSO60_17525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_17560 PF07690 Major Facilitator Superfamily LSO60_17565 PF01113 Dihydrodipicolinate reductase, N-terminus LSO60_17570 PF13610 DDE domain LSO60_17590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_17635 PF12833 Helix-turn-helix domain LSO60_17655 PF00905 Penicillin binding protein transpeptidase domain LSO60_17705 PF02522 Aminoglycoside 3-N-acetyltransferase LSO60_17735 PF02661 Fic/DOC family LSO60_17765 PF11798 IMS family HHH motif LSO60_17765 PF00817 impB/mucB/samB family LSO60_17765 PF13438 Domain of unknown function (DUF4113) LSO60_17765 PF11799 impB/mucB/samB family C-terminal domain LSO60_17770 PF01726 LexA DNA binding domain LSO60_17770 PF00717 Peptidase S24-like LSO60_17790 PF04233 Phage Mu protein F like protein LSO60_17795 PF13356 Arm DNA-binding domain LSO60_17795 PF00589 Phage integrase family LSO60_17840 PF13737 Transposase DDE domain LSO60_17845 PF13610 DDE domain LSO60_17860 PF00873 AcrB/AcrD/AcrF family LSO60_17865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO60_17885 PF00394 Multicopper oxidase LSO60_17885 PF07731 Multicopper oxidase LSO60_17885 PF07732 Multicopper oxidase LSO60_17895 PF00072 Response regulator receiver domain LSO60_17895 PF00486 Transcriptional regulatory protein, C terminal LSO60_17900 PF00512 His Kinase A (phospho-acceptor) domain LSO60_17900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO60_17900 PF00672 HAMP domain LSO60_17905 PF13194 Domain of unknown function (DUF4010) LSO60_17930 PF09828 Chromate resistance exported protein LSO60_17940 PF05973 Phage derived protein Gp49-like (DUF891) LSO60_17955 PF13411 MerR HTH family regulatory protein LSO60_17960 PF01545 Cation efflux family LSO60_17965 PF13737 Transposase DDE domain LSO60_17980 PF08239 Bacterial SH3 domain LSO60_17980 PF01520 N-acetylmuramoyl-L-alanine amidase LSO60_18005 PF00990 Diguanylate cyclase, GGDEF domain LSO60_18010 PF01625 Peptide methionine sulfoxide reductase LSO60_18015 PF01641 SelR domain LSO60_18020 PF00462 Glutaredoxin LSO60_18025 PF01625 Peptide methionine sulfoxide reductase LSO60_18030 PF12833 Helix-turn-helix domain LSO60_18030 PF02311 AraC-like ligand binding domain LSO60_18040 PF01625 Peptide methionine sulfoxide reductase LSO60_18055 PF02803 Thiolase, C-terminal domain LSO60_18055 PF00108 Thiolase, N-terminal domain LSO60_18060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO60_18060 PF00378 Enoyl-CoA hydratase/isomerase LSO60_18060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO60_18085 PF02899 Phage integrase, N-terminal SAM-like domain LSO60_18085 PF00589 Phage integrase family LSO60_18105 PF13610 DDE domain LSO60_18115 PF03466 LysR substrate binding domain LSO60_18115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_18125 PF00860 Permease family LSO60_18130 PF03502 Nucleoside-specific channel-forming protein, Tsx LSO60_18145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_18145 PF03466 LysR substrate binding domain LSO60_18160 PF03171 2OG-Fe(II) oxygenase superfamily LSO60_18160 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LSO60_18165 PF00355 Rieske [2Fe-2S] domain LSO60_18170 PF13737 Transposase DDE domain LSO60_18175 PF02583 Metal-sensitive transcriptional repressor LSO60_18180 PF00107 Zinc-binding dehydrogenase LSO60_18180 PF08240 Alcohol dehydrogenase GroES-like domain LSO60_18185 PF13610 DDE domain LSO60_18230 PF02661 Fic/DOC family LSO60_18255 PF13657 HipA N-terminal domain LSO60_18255 PF07804 HipA-like C-terminal domain LSO60_18275 PF13358 DDE superfamily endonuclease LSO60_18310 PF02601 Exonuclease VII, large subunit LSO60_18310 PF13742 OB-fold nucleic acid binding domain LSO60_18325 PF02358 Trehalose-phosphatase LSO60_18330 PF00982 Glycosyltransferase family 20 LSO60_18335 PF07690 Major Facilitator Superfamily LSO60_18380 PF04239 Protein of unknown function (DUF421) LSO60_18385 PF18011 C-terminal domain found in long catalases LSO60_18385 PF00199 Catalase LSO60_18385 PF06628 Catalase-related immune-responsive LSO60_18410 PF13737 Transposase DDE domain LSO60_18430 PF01726 LexA DNA binding domain LSO60_18430 PF00717 Peptidase S24-like LSO60_18435 PF13438 Domain of unknown function (DUF4113) LSO60_18435 PF00817 impB/mucB/samB family LSO60_18435 PF11799 impB/mucB/samB family C-terminal domain LSO60_18435 PF11798 IMS family HHH motif LSO60_18475 PF08946 Osmosensory transporter coiled coil LSO60_18475 PF00083 Sugar (and other) transporter LSO60_18480 PF01321 Creatinase/Prolidase N-terminal domain LSO60_18480 PF00557 Metallopeptidase family M24 LSO60_18485 PF01965 DJ-1/PfpI family LSO60_18485 PF12833 Helix-turn-helix domain LSO60_18490 PF01979 Amidohydrolase family LSO60_18490 PF00449 Urease alpha-subunit, N-terminal domain LSO60_18495 PF00699 Urease beta subunit LSO60_18500 PF00547 Urease, gamma subunit LSO60_18505 PF01774 UreD urease accessory protein LSO60_18515 PF02492 CobW/HypB/UreG, nucleotide-binding domain LSO60_18520 PF01730 UreF LSO60_18525 PF02814 UreE urease accessory protein, N-terminal domain LSO60_18525 PF05194 UreE urease accessory protein, C-terminal domain LSO60_18555 PF02195 ParB-like nuclease domain LSO60_18555 PF17762 HTH domain found in ParB protein LSO60_18560 PF13614 AAA domain LSO60_18570 PF13610 DDE domain LSO60_18585 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LSO60_18595 PF13610 DDE domain LSO60_18610 PF03466 LysR substrate binding domain LSO60_18610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO60_18620 PF02796 Helix-turn-helix domain of resolvase LSO60_18620 PF00239 Resolvase, N terminal domain LSO60_18625 PF13610 DDE domain LSO60_18635 PF00756 Putative esterase LSO60_18640 PF08240 Alcohol dehydrogenase GroES-like domain LSO60_18640 PF00107 Zinc-binding dehydrogenase LSO60_18645 PF02583 Metal-sensitive transcriptional repressor LSO60_18650 PF13610 DDE domain LSO60_18665 PF17755 UvrA DNA-binding domain LSO60_18670 PF13737 Transposase DDE domain LSO60_18675 PF00107 Zinc-binding dehydrogenase LSO60_18675 PF13823 Alcohol dehydrogenase GroES-associated LSO60_18675 PF08240 Alcohol dehydrogenase GroES-like domain LSO60_18690 PF02796 Helix-turn-helix domain of resolvase LSO60_18690 PF00239 Resolvase, N terminal domain LSO60_18720 PF13610 DDE domain LSO60_18760 PF03050 Transposase IS66 family LSO60_18760 PF13817 IS66 C-terminal element LSO60_18760 PF13007 Transposase C of IS166 homeodomain LSO60_18760 PF13005 zinc-finger binding domain of transposase IS66 LSO60_18775 PF13610 DDE domain LSO60_18785 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO60_18810 PF18818 Metallopeptidase superfamily domain LSO60_18810 PF08401 Domain of unknown function (DUF1738) LSO60_18820 PF01051 Initiator Replication protein LSO60_18835 PF13614 AAA domain LSO60_18865 PF03524 Conjugal transfer protein LSO60_18870 PF03743 Bacterial conjugation TrbI-like protein LSO60_18875 PF00437 Type II/IV secretion system protein LSO60_18890 PF10145 Phage-related minor tail protein LSO60_18890 PF01464 Transglycosylase SLT domain LSO60_18890 PF01551 Peptidase family M23 LSO60_18905 PF01551 Peptidase family M23 LSO60_18905 PF10145 Phage-related minor tail protein LSO60_18905 PF01464 Transglycosylase SLT domain LSO60_18910 PF13340 Putative transposase of IS4/5 family (DUF4096) LSO60_18915 PF05199 GMC oxidoreductase LSO60_18920 PF00171 Aldehyde dehydrogenase family LSO60_18925 PF12833 Helix-turn-helix domain LSO60_18925 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LSO60_18935 PF13340 Putative transposase of IS4/5 family (DUF4096) LSO60_18945 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LSO60_18965 PF02086 D12 class N6 adenine-specific DNA methyltransferase LSO60_18975 PF02796 Helix-turn-helix domain of resolvase LSO60_18975 PF00239 Resolvase, N terminal domain LSO60_18990 PF17841 BID domain of Bartonella effector protein (Bep) LSO60_18990 PF03389 MobA/MobL family LSO60_18990 PF01443 Viral (Superfamily 1) RNA helicase LSO60_19035 PF01051 Initiator Replication protein LSO60_19055 PF01850 PIN domain LSO60_19060 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LSO60_19090 PF01051 Initiator Replication protein