locus-tag class description LSO58_00005 PF00308 Bacterial dnaA protein LSO58_00005 PF08299 Bacterial dnaA protein helix-turn-helix LSO58_00005 PF11638 DnaA N-terminal domain LSO58_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LSO58_00010 PF02767 DNA polymerase III beta subunit, central domain LSO58_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LSO58_00015 PF02463 RecF/RecN/SMC N terminal domain LSO58_00020 PF00204 DNA gyrase B LSO58_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LSO58_00020 PF18053 DNA gyrase B subunit insert domain LSO58_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_00020 PF01751 Toprim domain LSO58_00030 PF00005 ABC transporter LSO58_00030 PF12848 ABC transporter LSO58_00050 PF01521 Iron-sulphur cluster biosynthesis LSO58_00055 PF03702 Anhydro-N-acetylmuramic acid kinase LSO58_00060 PF00579 tRNA synthetases class I (W and Y) LSO58_00090 PF01965 DJ-1/PfpI family LSO58_00095 PF15887 Putative zinc-binding metallo-peptidase LSO58_00095 PF10005 zinc-ribbon domain LSO58_00105 PF00171 Aldehyde dehydrogenase family LSO58_00110 PF00209 Sodium:neurotransmitter symporter family LSO58_00120 PF02535 ZIP Zinc transporter LSO58_00125 PF01189 16S rRNA methyltransferase RsmB/F LSO58_00125 PF01029 NusB family LSO58_00130 PF02911 Formyl transferase, C-terminal domain LSO58_00130 PF00551 Formyl transferase LSO58_00135 PF00920 Dehydratase family LSO58_00145 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_00150 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO58_00165 PF00860 Permease family LSO58_00170 PF00311 Phosphoenolpyruvate carboxylase LSO58_00175 PF00440 Bacterial regulatory proteins, tetR family LSO58_00180 PF13533 Biotin-lipoyl like LSO58_00185 PF00873 AcrB/AcrD/AcrF family LSO58_00195 PF00226 DnaJ domain LSO58_00195 PF01556 DnaJ C terminal domain LSO58_00195 PF00684 DnaJ central domain LSO58_00200 PF05173 Dihydrodipicolinate reductase, C-terminus LSO58_00200 PF01113 Dihydrodipicolinate reductase, N-terminus LSO58_00210 PF07690 Major Facilitator Superfamily LSO58_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_00215 PF03466 LysR substrate binding domain LSO58_00225 PF00392 Bacterial regulatory proteins, gntR family LSO58_00225 PF00155 Aminotransferase class I and II LSO58_00230 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_00230 PF00107 Zinc-binding dehydrogenase LSO58_00235 PF03352 Methyladenine glycosylase LSO58_00250 PF00730 HhH-GPD superfamily base excision DNA repair protein LSO58_00250 PF14815 NUDIX domain LSO58_00255 PF01230 HIT domain LSO58_00260 PF01738 Dienelactone hydrolase family LSO58_00265 PF07043 Protein of unknown function (DUF1328) LSO58_00270 PF03692 Putative zinc- or iron-chelating domain LSO58_00280 PF13411 MerR HTH family regulatory protein LSO58_00285 PF07995 Glucose / Sorbosone dehydrogenase LSO58_00290 PF00144 Beta-lactamase LSO58_00295 PF12002 MgsA AAA+ ATPase C terminal LSO58_00295 PF00004 ATPase family associated with various cellular activities (AAA) LSO58_00295 PF16193 AAA C-terminal domain LSO58_00300 PF01226 Formate/nitrite transporter LSO58_00305 PF01259 SAICAR synthetase LSO58_00315 PF00701 Dihydrodipicolinate synthetase family LSO58_00320 PF00857 Isochorismatase family LSO58_00325 PF01758 Sodium Bile acid symporter family LSO58_00330 PF14542 GCN5-related N-acetyl-transferase LSO58_00345 PF02753 Pili assembly chaperone PapD, C-terminal domain LSO58_00345 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LSO58_00350 PF00577 Outer membrane usher protein LSO58_00350 PF13953 PapC C-terminal domain LSO58_00350 PF13954 PapC N-terminal domain LSO58_00360 PF02753 Pili assembly chaperone PapD, C-terminal domain LSO58_00360 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LSO58_00375 PF10544 T5orf172 domain LSO58_00415 PF15978 Tn7-like transposition protein D LSO58_00415 PF06527 TniQ LSO58_00420 PF11426 Tn7 transposition regulator TnsC LSO58_00420 PF13401 AAA domain LSO58_00425 PF00665 Integrase core domain LSO58_00430 PF08722 TnsA endonuclease N terminal LSO58_00430 PF08721 TnsA endonuclease C terminal LSO58_00435 PF01380 SIS domain LSO58_00440 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_00440 PF14602 Hexapeptide repeat of succinyl-transferase LSO58_00440 PF12804 MobA-like NTP transferase domain LSO58_00445 PF04608 Phosphatidylglycerophosphatase A LSO58_00450 PF00586 AIR synthase related protein, N-terminal domain LSO58_00450 PF02769 AIR synthase related protein, C-terminal domain LSO58_00455 PF01029 NusB family LSO58_00460 PF00885 6,7-dimethyl-8-ribityllumazine synthase LSO58_00465 PF00925 GTP cyclohydrolase II LSO58_00465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LSO58_00490 PF02580 D-Tyr-tRNA(Tyr) deacylase LSO58_00495 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LSO58_00495 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LSO58_00500 PF00581 Rhodanese-like domain LSO58_00505 PF02666 Phosphatidylserine decarboxylase LSO58_00515 PF00106 short chain dehydrogenase LSO58_00520 PF03928 Haem-degrading LSO58_00525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_00525 PF00989 PAS fold LSO58_00525 PF11808 Phosphate regulon sensor protein PhoR LSO58_00525 PF00512 His Kinase A (phospho-acceptor) domain LSO58_00530 PF00072 Response regulator receiver domain LSO58_00530 PF00486 Transcriptional regulatory protein, C terminal LSO58_00540 PF00106 short chain dehydrogenase LSO58_00545 PF01554 MatE LSO58_00550 PF00155 Aminotransferase class I and II LSO58_00555 PF04286 Protein of unknown function (DUF445) LSO58_00570 PF04262 Glutamate-cysteine ligase LSO58_00575 PF02600 Disulfide bond formation protein DsbB LSO58_00585 PF05728 Uncharacterised protein family (UPF0227) LSO58_00590 PF00204 DNA gyrase B LSO58_00590 PF01751 Toprim domain LSO58_00590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_00590 PF00986 DNA gyrase B subunit, carboxyl terminus LSO58_00605 PF04115 Ureidoglycolate lyase LSO58_00610 PF03561 Allantoicase repeat LSO58_00615 PF01494 FAD binding domain LSO58_00625 PF00583 Acetyltransferase (GNAT) family LSO58_00635 PF00576 HIUase/Transthyretin family LSO58_00665 PF02683 Cytochrome C biogenesis protein transmembrane region LSO58_00665 PF11412 Disulphide bond corrector protein DsbC LSO58_00670 PF02798 Glutathione S-transferase, N-terminal domain LSO58_00670 PF00043 Glutathione S-transferase, C-terminal domain LSO58_00675 PF08448 PAS fold LSO58_00675 PF00990 Diguanylate cyclase, GGDEF domain LSO58_00680 PF07859 alpha/beta hydrolase fold LSO58_00690 PF03960 ArsC family LSO58_00695 PF03372 Endonuclease/Exonuclease/phosphatase family LSO58_00700 PF00156 Phosphoribosyl transferase domain LSO58_00710 PF00313 'Cold-shock' DNA-binding domain LSO58_00715 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LSO58_00715 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LSO58_00720 PF03033 Glycosyltransferase family 28 N-terminal domain LSO58_00720 PF04101 Glycosyltransferase family 28 C-terminal domain LSO58_00725 PF01225 Mur ligase family, catalytic domain LSO58_00725 PF02875 Mur ligase family, glutamate ligase domain LSO58_00725 PF08245 Mur ligase middle domain LSO58_00730 PF01820 D-ala D-ala ligase N-terminus LSO58_00730 PF07478 D-ala D-ala ligase C-terminus LSO58_00735 PF03799 Cell division protein FtsQ LSO58_00735 PF08478 POTRA domain, FtsQ-type LSO58_00740 PF02491 SHS2 domain inserted in FTSA LSO58_00745 PF00091 Tubulin/FtsZ family, GTPase domain LSO58_00745 PF12327 FtsZ family, C-terminal domain LSO58_00750 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LSO58_00765 PF00456 Transketolase, thiamine diphosphate binding domain LSO58_00765 PF17831 Pyruvate dehydrogenase E1 component middle domain LSO58_00770 PF02817 e3 binding domain LSO58_00770 PF00364 Biotin-requiring enzyme LSO58_00770 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LSO58_00780 PF01169 Uncharacterized protein family UPF0016 LSO58_00785 PF01613 Flavin reductase like domain LSO58_00785 PF00258 Flavodoxin LSO58_00795 PF00478 IMP dehydrogenase / GMP reductase domain LSO58_00795 PF00571 CBS domain LSO58_00800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO58_00800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO58_00800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO58_00800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO58_00805 PF01243 Pyridoxamine 5'-phosphate oxidase LSO58_00805 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LSO58_00810 PF17768 RecJ OB domain LSO58_00810 PF02272 DHHA1 domain LSO58_00810 PF01368 DHH family LSO58_00815 PF01381 Helix-turn-helix LSO58_00840 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO58_00850 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LSO58_00860 PF05552 Conserved TM helix LSO58_00860 PF00924 Mechanosensitive ion channel LSO58_00870 PF16177 Acetyl-coenzyme A synthetase N-terminus LSO58_00870 PF00501 AMP-binding enzyme LSO58_00870 PF13193 AMP-binding enzyme C-terminal domain LSO58_00875 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO58_00875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_00880 PF07715 TonB-dependent Receptor Plug Domain LSO58_00880 PF00593 TonB dependent receptor LSO58_00880 PF07660 Secretin and TonB N terminus short domain LSO58_00885 PF00296 Luciferase-like monooxygenase LSO58_00890 PF03358 NADPH-dependent FMN reductase LSO58_00895 PF00072 Response regulator receiver domain LSO58_00895 PF00196 Bacterial regulatory proteins, luxR family LSO58_00900 PF00909 Ammonium Transporter Family LSO58_00915 PF00512 His Kinase A (phospho-acceptor) domain LSO58_00915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_00915 PF09308 LuxQ, periplasmic LSO58_00915 PF00072 Response regulator receiver domain LSO58_00920 PF04341 Protein of unknown function, DUF485 LSO58_00925 PF00474 Sodium:solute symporter family LSO58_00940 PF02028 BCCT, betaine/carnitine/choline family transporter LSO58_00965 PF01638 HxlR-like helix-turn-helix LSO58_00975 PF02525 Flavodoxin-like fold LSO58_00990 PF09905 DNA-binding protein VF530 LSO58_01015 PF00176 SNF2 family N-terminal domain LSO58_01015 PF00271 Helicase conserved C-terminal domain LSO58_01015 PF12419 SNF2 Helicase protein LSO58_01020 PF07804 HipA-like C-terminal domain LSO58_01020 PF13657 HipA N-terminal domain LSO58_01030 PF00589 Phage integrase family LSO58_01030 PF02899 Phage integrase, N-terminal SAM-like domain LSO58_01055 PF00691 OmpA family LSO58_01055 PF01389 OmpA-like transmembrane domain LSO58_01065 PF02321 Outer membrane efflux protein LSO58_01070 PF00664 ABC transporter transmembrane region LSO58_01070 PF00005 ABC transporter LSO58_01095 PF00199 Catalase LSO58_01110 PF00296 Luciferase-like monooxygenase LSO58_01120 PF07120 Protein of unknown function (DUF1376) LSO58_01165 PF13614 AAA domain LSO58_01180 PF09335 SNARE associated Golgi protein LSO58_01185 PF07681 DoxX LSO58_01190 PF04076 Bacterial OB fold (BOF) protein LSO58_01195 PF00117 Glutamine amidotransferase class-I LSO58_01195 PF00958 GMP synthase C terminal domain LSO58_01195 PF02540 NAD synthase LSO58_01200 PF01909 Nucleotidyltransferase domain LSO58_01200 PF13427 Domain of unknown function (DUF4111) LSO58_01205 PF03551 Transcriptional regulator PadR-like family LSO58_01210 PF01475 Ferric uptake regulator family LSO58_01220 PF05726 Pirin C-terminal cupin domain LSO58_01220 PF02678 Pirin LSO58_01245 PF00750 tRNA synthetases class I (R) LSO58_01245 PF05746 DALR anticodon binding domain LSO58_01245 PF03485 Arginyl tRNA synthetase N terminal domain LSO58_01255 PF03949 Malic enzyme, NAD binding domain LSO58_01255 PF00390 Malic enzyme, N-terminal domain LSO58_01260 PF13296 Putative type VI secretion system Rhs element Vgr LSO58_01260 PF04717 Type VI secretion system, phage-baseplate injector LSO58_01260 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LSO58_01265 PF00877 NlpC/P60 family LSO58_01265 PF01476 LysM domain LSO58_01275 PF01810 LysE type translocator LSO58_01280 PF00950 ABC 3 transport family LSO58_01285 PF00005 ABC transporter LSO58_01305 PF00119 ATP synthase A chain LSO58_01310 PF00137 ATP synthase subunit C LSO58_01315 PF00430 ATP synthase B/B' CF(0) LSO58_01320 PF00213 ATP synthase delta (OSCP) subunit LSO58_01325 PF02874 ATP synthase alpha/beta family, beta-barrel domain LSO58_01325 PF00306 ATP synthase alpha/beta chain, C terminal domain LSO58_01325 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO58_01330 PF00231 ATP synthase LSO58_01335 PF02874 ATP synthase alpha/beta family, beta-barrel domain LSO58_01335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO58_01340 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LSO58_01350 PF00107 Zinc-binding dehydrogenase LSO58_01350 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_01360 PF00082 Subtilase family LSO58_01360 PF05922 Peptidase inhibitor I9 LSO58_01365 PF00255 Glutathione peroxidase LSO58_01375 PF07690 Major Facilitator Superfamily LSO58_01380 PF00440 Bacterial regulatory proteins, tetR family LSO58_01385 PF00892 EamA-like transporter family LSO58_01390 PF02608 ABC transporter substrate-binding protein PnrA-like LSO58_01395 PF00355 Rieske [2Fe-2S] domain LSO58_01395 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO58_01410 PF03466 LysR substrate binding domain LSO58_01410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_01425 PF00005 ABC transporter LSO58_01430 PF02653 Branched-chain amino acid transport system / permease component LSO58_01435 PF02653 Branched-chain amino acid transport system / permease component LSO58_01440 PF01300 Telomere recombination LSO58_01445 PF17782 DprA winged helix domain LSO58_01445 PF02481 DNA recombination-mediator protein A LSO58_01450 PF01476 LysM domain LSO58_01455 PF01327 Polypeptide deformylase LSO58_01480 PF00440 Bacterial regulatory proteins, tetR family LSO58_01515 PF11842 Domain of unknown function (DUF3362) LSO58_01515 PF04055 Radical SAM superfamily LSO58_01515 PF08497 Radical SAM N-terminal LSO58_01530 PF07690 Major Facilitator Superfamily LSO58_01530 PF00083 Sugar (and other) transporter LSO58_01535 PF11798 IMS family HHH motif LSO58_01535 PF00817 impB/mucB/samB family LSO58_01535 PF11799 impB/mucB/samB family C-terminal domain LSO58_01540 PF01183 Glycosyl hydrolases family 25 LSO58_01545 PF07690 Major Facilitator Superfamily LSO58_01550 PF03641 Possible lysine decarboxylase LSO58_01555 PF03741 Integral membrane protein TerC family LSO58_01555 PF03471 Transporter associated domain LSO58_01560 PF02810 SEC-C motif LSO58_01565 PF03458 UPF0126 domain LSO58_01575 PF07690 Major Facilitator Superfamily LSO58_01580 PF00521 DNA gyrase/topoisomerase IV, subunit A LSO58_01580 PF03989 DNA gyrase C-terminal domain, beta-propeller LSO58_01585 PF00501 AMP-binding enzyme LSO58_01585 PF13193 AMP-binding enzyme C-terminal domain LSO58_01600 PF00719 Inorganic pyrophosphatase LSO58_01615 PF13335 Magnesium chelatase, subunit ChlI C-terminal LSO58_01615 PF01078 Magnesium chelatase, subunit ChlI LSO58_01625 PF00543 Nitrogen regulatory protein P-II LSO58_01630 PF00909 Ammonium Transporter Family LSO58_01635 PF03477 ATP cone domain LSO58_01640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LSO58_01640 PF01872 RibD C-terminal domain LSO58_01650 PF00677 Lumazine binding domain LSO58_01670 PF00883 Cytosol aminopeptidase family, catalytic domain LSO58_01670 PF02789 Cytosol aminopeptidase family, N-terminal domain LSO58_01675 PF03739 Lipopolysaccharide export system permease LptF/LptG LSO58_01680 PF03739 Lipopolysaccharide export system permease LptF/LptG LSO58_01685 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LSO58_01685 PF01676 Metalloenzyme superfamily LSO58_01690 PF01471 Putative peptidoglycan binding domain LSO58_01690 PF03572 Peptidase family S41 LSO58_01690 PF17820 PDZ domain LSO58_01695 PF02954 Bacterial regulatory protein, Fis family LSO58_01695 PF00072 Response regulator receiver domain LSO58_01695 PF00158 Sigma-54 interaction domain LSO58_01700 PF00512 His Kinase A (phospho-acceptor) domain LSO58_01700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_01705 PF00072 Response regulator receiver domain LSO58_01705 PF00196 Bacterial regulatory proteins, luxR family LSO58_01710 PF00768 D-alanyl-D-alanine carboxypeptidase LSO58_01715 PF00291 Pyridoxal-phosphate dependent enzyme LSO58_01720 PF00742 Homoserine dehydrogenase LSO58_01720 PF01842 ACT domain LSO58_01720 PF03447 Homoserine dehydrogenase, NAD binding domain LSO58_01725 PF10411 Disulfide bond isomerase protein N-terminus LSO58_01725 PF13098 Thioredoxin-like domain LSO58_01730 PF02899 Phage integrase, N-terminal SAM-like domain LSO58_01730 PF00589 Phage integrase family LSO58_01740 PF07664 Ferrous iron transport protein B C terminus LSO58_01740 PF02421 Ferrous iron transport protein B LSO58_01740 PF07670 Nucleoside recognition LSO58_01750 PF08245 Mur ligase middle domain LSO58_01750 PF02875 Mur ligase family, glutamate ligase domain LSO58_01755 PF01098 Cell cycle protein LSO58_01760 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO58_01765 PF01258 Prokaryotic dksA/traR C4-type zinc finger LSO58_01770 PF00149 Calcineurin-like phosphoesterase LSO58_01775 PF00293 NUDIX domain LSO58_01780 PF01964 Radical SAM ThiC family LSO58_01780 PF13667 ThiC-associated domain LSO58_01790 PF01895 PhoU domain LSO58_01795 PF04362 Bacterial Fe(2+) trafficking LSO58_01800 PF00206 Lyase LSO58_01800 PF14698 Argininosuccinate lyase C-terminal LSO58_01805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_01805 PF06580 Histidine kinase LSO58_01805 PF07694 5TMR of 5TMR-LYT LSO58_01810 PF04397 LytTr DNA-binding domain LSO58_01810 PF00072 Response regulator receiver domain LSO58_01815 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LSO58_01815 PF03900 Porphobilinogen deaminase, C-terminal domain LSO58_01840 PF00816 H-NS histone family LSO58_01855 PF03958 Bacterial type II/III secretion system short domain LSO58_01855 PF00263 Bacterial type II and III secretion system protein LSO58_01860 PF12401 Protein of unknown function (DUF2662) LSO58_01860 PF00498 FHA domain LSO58_01865 PF13419 Haloacid dehalogenase-like hydrolase LSO58_01870 PF04715 Anthranilate synthase component I, N terminal region LSO58_01870 PF00425 chorismate binding enzyme LSO58_01895 PF00009 Elongation factor Tu GTP binding domain LSO58_01895 PF03144 Elongation factor Tu domain 2 LSO58_01895 PF03143 Elongation factor Tu C-terminal domain LSO58_01905 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LSO58_01910 PF00467 KOW motif LSO58_01910 PF02357 Transcription termination factor nusG LSO58_01915 PF00298 Ribosomal protein L11, RNA binding domain LSO58_01915 PF03946 Ribosomal protein L11, N-terminal domain LSO58_01920 PF00687 Ribosomal protein L1p/L10e family LSO58_01925 PF00466 Ribosomal protein L10 LSO58_01930 PF00542 Ribosomal protein L7/L12 C-terminal domain LSO58_01930 PF16320 Ribosomal protein L7/L12 dimerisation domain LSO58_01935 PF04563 RNA polymerase beta subunit LSO58_01935 PF04561 RNA polymerase Rpb2, domain 2 LSO58_01935 PF04565 RNA polymerase Rpb2, domain 3 LSO58_01935 PF10385 RNA polymerase beta subunit external 1 domain LSO58_01935 PF00562 RNA polymerase Rpb2, domain 6 LSO58_01935 PF04560 RNA polymerase Rpb2, domain 7 LSO58_01940 PF00623 RNA polymerase Rpb1, domain 2 LSO58_01940 PF04983 RNA polymerase Rpb1, domain 3 LSO58_01940 PF05000 RNA polymerase Rpb1, domain 4 LSO58_01940 PF04998 RNA polymerase Rpb1, domain 5 LSO58_01940 PF04997 RNA polymerase Rpb1, domain 1 LSO58_01955 PF00561 alpha/beta hydrolase fold LSO58_01960 PF00324 Amino acid permease LSO58_01975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_01975 PF00183 Hsp90 protein LSO58_01990 PF00893 Small Multidrug Resistance protein LSO58_02005 PF01323 DSBA-like thioredoxin domain LSO58_02015 PF00210 Ferritin-like domain LSO58_02020 PF04324 BFD-like [2Fe-2S] binding domain LSO58_02025 PF01042 Endoribonuclease L-PSP LSO58_02030 PF13291 ACT domain LSO58_02030 PF04607 Region found in RelA / SpoT proteins LSO58_02030 PF02824 TGS domain LSO58_02035 PF01192 RNA polymerase Rpb6 LSO58_02040 PF00625 Guanylate kinase LSO58_02045 PF02401 LytB protein LSO58_02075 PF07963 Prokaryotic N-terminal methylation motif LSO58_02075 PF00114 Pilin (bacterial filament) LSO58_02085 PF00886 Ribosomal protein S16 LSO58_02090 PF05239 PRC-barrel domain LSO58_02090 PF01782 RimM N-terminal domain LSO58_02095 PF01746 tRNA (Guanine-1)-methyltransferase LSO58_02100 PF01245 Ribosomal protein L19 LSO58_02105 PF00561 alpha/beta hydrolase fold LSO58_02110 PF03280 Proteobacterial lipase chaperone protein LSO58_02115 PF09157 Pseudouridine synthase II TruB, C-terminal LSO58_02115 PF16198 tRNA pseudouridylate synthase B C-terminal domain LSO58_02115 PF01509 TruB family pseudouridylate synthase (N terminal domain) LSO58_02120 PF01925 Sulfite exporter TauE/SafE LSO58_02130 PF00892 EamA-like transporter family LSO58_02135 PF00892 EamA-like transporter family LSO58_02140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO58_02140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO58_02145 PF02913 FAD linked oxidases, C-terminal domain LSO58_02145 PF01565 FAD binding domain LSO58_02165 PF03992 Antibiotic biosynthesis monooxygenase LSO58_02170 PF02525 Flavodoxin-like fold LSO58_02185 PF01594 AI-2E family transporter LSO58_02190 PF13614 AAA domain LSO58_02215 PF00248 Aldo/keto reductase family LSO58_02235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO58_02235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO58_02250 PF03466 LysR substrate binding domain LSO58_02250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_02255 PF00892 EamA-like transporter family LSO58_02265 PF02092 Glycyl-tRNA synthetase beta subunit LSO58_02265 PF05746 DALR anticodon binding domain LSO58_02270 PF02091 Glycyl-tRNA synthetase alpha subunit LSO58_02285 PF00571 CBS domain LSO58_02290 PF04024 PspC domain LSO58_02300 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO58_02300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_02300 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_02300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_02310 PF08501 Shikimate dehydrogenase substrate binding domain LSO58_02310 PF01488 Shikimate / quinate 5-dehydrogenase LSO58_02310 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LSO58_02315 PF00691 OmpA family LSO58_02315 PF13488 Glycine zipper LSO58_02325 PF01218 Coproporphyrinogen III oxidase LSO58_02330 PF00925 GTP cyclohydrolase II LSO58_02335 PF02780 Transketolase, C-terminal domain LSO58_02335 PF02779 Transketolase, pyrimidine binding domain LSO58_02335 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LSO58_02340 PF00459 Inositol monophosphatase family LSO58_02355 PF00271 Helicase conserved C-terminal domain LSO58_02355 PF00270 DEAD/DEAH box helicase LSO58_02365 PF00005 ABC transporter LSO58_02370 PF02405 Permease MlaE LSO58_02390 PF01544 CorA-like Mg2+ transporter protein LSO58_02395 PF03641 Possible lysine decarboxylase LSO58_02400 PF00293 NUDIX domain LSO58_02405 PF00156 Phosphoribosyl transferase domain LSO58_02410 PF00271 Helicase conserved C-terminal domain LSO58_02410 PF17191 RecG wedge domain LSO58_02410 PF00270 DEAD/DEAH box helicase LSO58_02425 PF01553 Acyltransferase LSO58_02435 PF00375 Sodium:dicarboxylate symporter family LSO58_02445 PF01926 50S ribosome-binding GTPase LSO58_02450 PF02082 Transcriptional regulator LSO58_02455 PF00042 Globin LSO58_02455 PF00175 Oxidoreductase NAD-binding domain LSO58_02455 PF00970 Oxidoreductase FAD-binding domain LSO58_02460 PF05872 Bacterial protein of unknown function (DUF853) LSO58_02465 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO58_02470 PF00117 Glutamine amidotransferase class-I LSO58_02475 PF00338 Ribosomal protein S10p/S20e LSO58_02480 PF00297 Ribosomal protein L3 LSO58_02485 PF00573 Ribosomal protein L4/L1 family LSO58_02490 PF00276 Ribosomal protein L23 LSO58_02495 PF00181 Ribosomal Proteins L2, RNA binding domain LSO58_02495 PF03947 Ribosomal Proteins L2, C-terminal domain LSO58_02500 PF00203 Ribosomal protein S19 LSO58_02505 PF00237 Ribosomal protein L22p/L17e LSO58_02515 PF00252 Ribosomal protein L16p/L10e LSO58_02520 PF00831 Ribosomal L29 protein LSO58_02525 PF00366 Ribosomal protein S17 LSO58_02530 PF00238 Ribosomal protein L14p/L23e LSO58_02535 PF00467 KOW motif LSO58_02535 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LSO58_02540 PF00281 Ribosomal protein L5 LSO58_02540 PF00673 ribosomal L5P family C-terminus LSO58_02545 PF00253 Ribosomal protein S14p/S29e LSO58_02550 PF00410 Ribosomal protein S8 LSO58_02555 PF00347 Ribosomal protein L6 LSO58_02560 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LSO58_02565 PF00333 Ribosomal protein S5, N-terminal domain LSO58_02565 PF03719 Ribosomal protein S5, C-terminal domain LSO58_02570 PF00327 Ribosomal protein L30p/L7e LSO58_02575 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LSO58_02580 PF00344 SecY translocase LSO58_02585 PF00444 Ribosomal protein L36 LSO58_02590 PF00416 Ribosomal protein S13/S18 LSO58_02595 PF00411 Ribosomal protein S11 LSO58_02600 PF00163 Ribosomal protein S4/S9 N-terminal domain LSO58_02600 PF01479 S4 domain LSO58_02605 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LSO58_02605 PF01000 RNA polymerase Rpb3/RpoA insert domain LSO58_02605 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LSO58_02610 PF01196 Ribosomal protein L17 LSO58_02615 PF00743 Flavin-binding monooxygenase-like LSO58_02620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_02620 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_02620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_02625 PF03937 Flavinator of succinate dehydrogenase LSO58_02655 PF09526 Probable metal-binding protein (DUF2387) LSO58_02660 PF01432 Peptidase family M3 LSO58_02670 PF17876 Cold shock domain LSO58_02670 PF08461 Ribonuclease R winged-helix domain LSO58_02670 PF08206 Ribonuclease B OB domain LSO58_02670 PF00773 RNB domain LSO58_02670 PF00575 S1 RNA binding domain LSO58_02695 PF00512 His Kinase A (phospho-acceptor) domain LSO58_02695 PF08448 PAS fold LSO58_02695 PF13426 PAS domain LSO58_02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_02695 PF00072 Response regulator receiver domain LSO58_02715 PF01557 Fumarylacetoacetate (FAA) hydrolase family LSO58_02720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO58_02725 PF07690 Major Facilitator Superfamily LSO58_02730 PF03466 LysR substrate binding domain LSO58_02730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_02745 PF03631 Virulence factor BrkB LSO58_02750 PF03358 NADPH-dependent FMN reductase LSO58_02780 PF02130 Uncharacterized protein family UPF0054 LSO58_02785 PF02562 PhoH-like protein LSO58_02790 PF01938 TRAM domain LSO58_02790 PF00919 Uncharacterized protein family UPF0004 LSO58_02790 PF04055 Radical SAM superfamily LSO58_02795 PF01551 Peptidase family M23 LSO58_02795 PF10145 Phage-related minor tail protein LSO58_02795 PF01464 Transglycosylase SLT domain LSO58_02805 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LSO58_02805 PF00056 lactate/malate dehydrogenase, NAD binding domain LSO58_02825 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LSO58_02830 PF01066 CDP-alcohol phosphatidyltransferase LSO58_02890 PF04386 Stringent starvation protein B LSO58_02895 PF00043 Glutathione S-transferase, C-terminal domain LSO58_02895 PF02798 Glutathione S-transferase, N-terminal domain LSO58_02900 PF00380 Ribosomal protein S9/S16 LSO58_02905 PF00572 Ribosomal protein L13 LSO58_02910 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LSO58_02915 PF00398 Ribosomal RNA adenine dimethylase LSO58_02920 PF00149 Calcineurin-like phosphoesterase LSO58_02940 PF16360 GTP-binding GTPase Middle Region LSO58_02940 PF13167 GTP-binding GTPase N-terminal LSO58_02940 PF01926 50S ribosome-binding GTPase LSO58_02955 PF13091 PLD-like domain LSO58_02960 PF00149 Calcineurin-like phosphoesterase LSO58_02960 PF10518 TAT (twin-arginine translocation) pathway signal sequence LSO58_02965 PF07690 Major Facilitator Superfamily LSO58_02965 PF00083 Sugar (and other) transporter LSO58_02970 PF03006 Haemolysin-III related LSO58_02980 PF13673 Acetyltransferase (GNAT) domain LSO58_02990 PF01734 Patatin-like phospholipase LSO58_03000 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO58_03000 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO58_03000 PF00378 Enoyl-CoA hydratase/isomerase LSO58_03005 PF02803 Thiolase, C-terminal domain LSO58_03005 PF00108 Thiolase, N-terminal domain LSO58_03010 PF01202 Shikimate kinase LSO58_03020 PF12833 Helix-turn-helix domain LSO58_03020 PF02311 AraC-like ligand binding domain LSO58_03025 PF02515 CoA-transferase family III LSO58_03030 PF04966 Carbohydrate-selective porin, OprB family LSO58_03035 PF01011 PQQ enzyme repeat LSO58_03040 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO58_03040 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO58_03050 PF03129 Anticodon binding domain LSO58_03050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO58_03050 PF04073 Aminoacyl-tRNA editing domain LSO58_03055 PF00873 AcrB/AcrD/AcrF family LSO58_03070 PF00072 Response regulator receiver domain LSO58_03075 PF00072 Response regulator receiver domain LSO58_03080 PF01584 CheW-like domain LSO58_03085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LSO58_03085 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LSO58_03090 PF01584 CheW-like domain LSO58_03090 PF02895 Signal transducing histidine kinase, homodimeric domain LSO58_03090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_03090 PF01627 Hpt domain LSO58_03090 PF07194 P2 response regulator binding domain LSO58_03105 PF01139 tRNA-splicing ligase RtcB LSO58_03110 PF00324 Amino acid permease LSO58_03115 PF05175 Methyltransferase small domain LSO58_03115 PF08468 Methyltransferase small domain N-terminal LSO58_03120 PF00860 Permease family LSO58_03125 PF03144 Elongation factor Tu domain 2 LSO58_03125 PF00679 Elongation factor G C-terminus LSO58_03125 PF00009 Elongation factor Tu GTP binding domain LSO58_03130 PF01741 Large-conductance mechanosensitive channel, MscL LSO58_03140 PF00639 PPIC-type PPIASE domain LSO58_03140 PF09312 SurA N-terminal domain LSO58_03145 PF06827 Zinc finger found in FPG and IleRS LSO58_03145 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LSO58_03145 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LSO58_03150 PF02245 Methylpurine-DNA glycosylase (MPG) LSO58_03155 PF07715 TonB-dependent Receptor Plug Domain LSO58_03155 PF00593 TonB dependent receptor LSO58_03160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO58_03175 PF10411 Disulfide bond isomerase protein N-terminus LSO58_03175 PF13098 Thioredoxin-like domain LSO58_03195 PF05992 SbmA/BacA-like family LSO58_03210 PF03466 LysR substrate binding domain LSO58_03210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_03250 PF02934 GatB/GatE catalytic domain LSO58_03250 PF02637 GatB domain LSO58_03255 PF01425 Amidase LSO58_03260 PF02686 Glu-tRNAGln amidotransferase C subunit LSO58_03270 PF04085 rod shape-determining protein MreC LSO58_03280 PF02545 Maf-like protein LSO58_03285 PF10150 Ribonuclease E/G family LSO58_03285 PF00575 S1 RNA binding domain LSO58_03295 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LSO58_03295 PF06974 Protein of unknown function (DUF1298) LSO58_03300 PF01507 Phosphoadenosine phosphosulfate reductase family LSO58_03310 PF01266 FAD dependent oxidoreductase LSO58_03310 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LSO58_03320 PF03795 YCII-related domain LSO58_03325 PF04279 Intracellular septation protein A LSO58_03335 PF03466 LysR substrate binding domain LSO58_03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_03340 PF00248 Aldo/keto reductase family LSO58_03345 PF01062 Bestrophin, RFP-TM, chloride channel LSO58_03350 PF04002 RadC-like JAB domain LSO58_03355 PF04127 DNA / pantothenate metabolism flavoprotein LSO58_03355 PF02441 Flavoprotein LSO58_03360 PF07361 Cytochrome b562 LSO58_03365 PF02556 Preprotein translocase subunit SecB LSO58_03370 PF00462 Glutaredoxin LSO58_03380 PF03193 RsgA GTPase LSO58_03385 PF00929 Exonuclease LSO58_03395 PF05681 Fumarate hydratase (Fumerase) LSO58_03395 PF05683 Fumarase C-terminus LSO58_03405 PF00857 Isochorismatase family LSO58_03410 PF01515 Phosphate acetyl/butaryl transferase LSO58_03410 PF07085 DRTGG domain LSO58_03415 PF00871 Acetokinase family LSO58_03420 PF00171 Aldehyde dehydrogenase family LSO58_03425 PF00561 alpha/beta hydrolase fold LSO58_03435 PF00933 Glycosyl hydrolase family 3 N terminal domain LSO58_03440 PF11818 C-terminal domain of tail specific protease (DUF3340) LSO58_03440 PF00595 PDZ domain LSO58_03440 PF03572 Peptidase family S41 LSO58_03440 PF17804 Tail specific protease N-terminal domain LSO58_03445 PF13439 Glycosyltransferase Family 4 LSO58_03445 PF00534 Glycosyl transferases group 1 LSO58_03450 PF01569 PAP2 superfamily LSO58_03455 PF04384 Iron-sulphur cluster assembly LSO58_03460 PF00334 Nucleoside diphosphate kinase LSO58_03465 PF04055 Radical SAM superfamily LSO58_03480 PF04551 GcpE protein LSO58_03485 PF03129 Anticodon binding domain LSO58_03485 PF13393 Histidyl-tRNA synthetase LSO58_03495 PF13360 PQQ-like domain LSO58_03500 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LSO58_03500 PF01926 50S ribosome-binding GTPase LSO58_03515 PF00550 Phosphopantetheine attachment site LSO58_03520 PF00550 Phosphopantetheine attachment site LSO58_03530 PF07977 FabA-like domain LSO58_03545 PF00221 Aromatic amino acid lyase LSO58_03565 PF01494 FAD binding domain LSO58_03575 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO58_03575 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO58_03590 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO58_03590 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO58_03610 PF02355 Protein export membrane protein LSO58_03610 PF07549 SecD/SecF GG Motif LSO58_03615 PF02355 Protein export membrane protein LSO58_03615 PF13721 SecD export protein N-terminal TM region LSO58_03615 PF07549 SecD/SecF GG Motif LSO58_03620 PF02699 Preprotein translocase subunit LSO58_03625 PF01702 Queuine tRNA-ribosyltransferase LSO58_03630 PF04011 LemA family LSO58_03640 PF02547 Queuosine biosynthesis protein LSO58_03740 PF02384 N-6 DNA Methylase LSO58_03745 PF17191 RecG wedge domain LSO58_03745 PF00270 DEAD/DEAH box helicase LSO58_03745 PF13749 Putative ATP-dependent DNA helicase recG C-terminal LSO58_03750 PF01420 Type I restriction modification DNA specificity domain LSO58_03765 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LSO58_03765 PF18766 SWI2/SNF2 ATPase LSO58_03765 PF11867 Domain of unknown function (DUF3387) LSO58_03770 PF02661 Fic/DOC family LSO58_03770 PF13784 Fic/DOC family N-terminal LSO58_03790 PF00667 FAD binding domain LSO58_03790 PF00258 Flavodoxin LSO58_03790 PF00175 Oxidoreductase NAD-binding domain LSO58_03800 PF00512 His Kinase A (phospho-acceptor) domain LSO58_03800 PF08521 Two-component sensor kinase N-terminal LSO58_03800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_03805 PF00486 Transcriptional regulatory protein, C terminal LSO58_03805 PF00072 Response regulator receiver domain LSO58_03815 PF00593 TonB dependent receptor LSO58_03815 PF07715 TonB-dependent Receptor Plug Domain LSO58_03830 PF01545 Cation efflux family LSO58_03840 PF07690 Major Facilitator Superfamily LSO58_03850 PF00376 MerR family regulatory protein LSO58_03850 PF09278 MerR, DNA binding LSO58_03855 PF00892 EamA-like transporter family LSO58_03860 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LSO58_03860 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LSO58_03865 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LSO58_03870 PF02233 NAD(P) transhydrogenase beta subunit LSO58_03885 PF00990 Diguanylate cyclase, GGDEF domain LSO58_03885 PF07694 5TMR of 5TMR-LYT LSO58_03890 PF07689 KaiB domain LSO58_03890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_03890 PF00512 His Kinase A (phospho-acceptor) domain LSO58_03895 PF03710 Glutamate-ammonia ligase adenylyltransferase LSO58_03895 PF08335 GlnD PII-uridylyltransferase LSO58_03900 PF01063 Amino-transferase class IV LSO58_03910 PF01522 Polysaccharide deacetylase LSO58_03915 PF00534 Glycosyl transferases group 1 LSO58_03915 PF13439 Glycosyltransferase Family 4 LSO58_03925 PF00534 Glycosyl transferases group 1 LSO58_03925 PF13439 Glycosyltransferase Family 4 LSO58_03935 PF09612 Bacterial protein of unknown function (HtrL_YibB) LSO58_03940 PF08437 Glycosyl transferase family 8 C-terminal LSO58_03940 PF01501 Glycosyl transferase family 8 LSO58_03955 PF00152 tRNA synthetases class II (D, K and N) LSO58_03955 PF02938 GAD domain LSO58_03955 PF01336 OB-fold nucleic acid binding domain LSO58_03965 PF07715 TonB-dependent Receptor Plug Domain LSO58_03965 PF00593 TonB dependent receptor LSO58_03970 PF00593 TonB dependent receptor LSO58_03970 PF07715 TonB-dependent Receptor Plug Domain LSO58_04000 PF06146 Phosphate-starvation-inducible E LSO58_04005 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_04005 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_04005 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_04005 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO58_04010 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_04010 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO58_04010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_04010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_04020 PF00672 HAMP domain LSO58_04020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_04020 PF00512 His Kinase A (phospho-acceptor) domain LSO58_04025 PF00072 Response regulator receiver domain LSO58_04025 PF00486 Transcriptional regulatory protein, C terminal LSO58_04030 PF04237 YjbR LSO58_04040 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LSO58_04050 PF03819 MazG nucleotide pyrophosphohydrolase domain LSO58_04060 PF12627 Probable RNA and SrmB- binding site of polymerase A LSO58_04060 PF12626 Polymerase A arginine-rich C-terminus LSO58_04060 PF01743 Poly A polymerase head domain LSO58_04065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LSO58_04070 PF02548 Ketopantoate hydroxymethyltransferase LSO58_04075 PF02569 Pantoate-beta-alanine ligase LSO58_04080 PF03668 P-loop ATPase protein family LSO58_04085 PF00381 PTS HPr component phosphorylation site LSO58_04090 PF04751 Protein of unknown function (DUF615) LSO58_04095 PF13193 AMP-binding enzyme C-terminal domain LSO58_04095 PF00501 AMP-binding enzyme LSO58_04100 PF03129 Anticodon binding domain LSO58_04100 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LSO58_04100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO58_04100 PF02824 TGS domain LSO58_04105 PF05198 Translation initiation factor IF-3, N-terminal domain LSO58_04105 PF00707 Translation initiation factor IF-3, C-terminal domain LSO58_04110 PF02798 Glutathione S-transferase, N-terminal domain LSO58_04110 PF00043 Glutathione S-transferase, C-terminal domain LSO58_04115 PF09335 SNARE associated Golgi protein LSO58_04130 PF01632 Ribosomal protein L35 LSO58_04135 PF00453 Ribosomal protein L20 LSO58_04155 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LSO58_04155 PF01409 tRNA synthetases class II core domain (F) LSO58_04160 PF01588 Putative tRNA binding domain LSO58_04160 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LSO58_04160 PF03147 Ferredoxin-fold anticodon binding domain LSO58_04160 PF03484 tRNA synthetase B5 domain LSO58_04160 PF03483 B3/4 domain LSO58_04165 PF00216 Bacterial DNA-binding protein LSO58_04175 PF07498 Rho termination factor, N-terminal domain LSO58_04175 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO58_04175 PF07497 Rho termination factor, RNA-binding domain LSO58_04180 PF00085 Thioredoxin LSO58_04185 PF02541 Ppx/GppA phosphatase family LSO58_04190 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LSO58_04195 PF01171 PP-loop family LSO58_04195 PF11734 TilS substrate C-terminal domain LSO58_04195 PF09179 TilS substrate binding domain LSO58_04200 PF14748 Pyrroline-5-carboxylate reductase dimerisation LSO58_04200 PF03807 NADP oxidoreductase coenzyme F420-dependent LSO58_04205 PF02325 YGGT family LSO58_04210 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LSO58_04210 PF01612 3'-5' exonuclease LSO58_04210 PF00476 DNA polymerase family A LSO58_04210 PF01367 5'-3' exonuclease, C-terminal SAM fold LSO58_04230 PF00437 Type II/IV secretion system protein LSO58_04235 PF01047 MarR family LSO58_04240 PF00795 Carbon-nitrogen hydrolase LSO58_04285 PF04963 Sigma-54 factor, core binding domain LSO58_04285 PF00309 Sigma-54 factor, Activator interacting domain (AID) LSO58_04285 PF04552 Sigma-54, DNA binding domain LSO58_04290 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LSO58_04295 PF01722 BolA-like protein LSO58_04300 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LSO58_04305 PF01634 ATP phosphoribosyltransferase LSO58_04315 PF00815 Histidinol dehydrogenase LSO58_04320 PF00155 Aminotransferase class I and II LSO58_04325 PF00425 chorismate binding enzyme LSO58_04325 PF04715 Anthranilate synthase component I, N terminal region LSO58_04365 PF00293 NUDIX domain LSO58_04370 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_04375 PF00814 Glycoprotease family LSO58_04380 PF02673 Bacitracin resistance protein BacA LSO58_04385 PF04445 Putative SAM-dependent methyltransferase LSO58_04395 PF00756 Putative esterase LSO58_04400 PF05987 Bacterial protein of unknown function (DUF898) LSO58_04415 PF00834 Ribulose-phosphate 3 epimerase family LSO58_04425 PF07732 Multicopper oxidase LSO58_04425 PF07731 Multicopper oxidase LSO58_04425 PF00394 Multicopper oxidase LSO58_04445 PF00893 Small Multidrug Resistance protein LSO58_04450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LSO58_04450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LSO58_04460 PF00962 Adenosine/AMP deaminase LSO58_04465 PF04966 Carbohydrate-selective porin, OprB family LSO58_04485 PF00580 UvrD/REP helicase N-terminal domain LSO58_04485 PF13361 UvrD-like helicase C-terminal domain LSO58_04490 PF00268 Ribonucleotide reductase, small chain LSO58_04500 PF03477 ATP cone domain LSO58_04500 PF02867 Ribonucleotide reductase, barrel domain LSO58_04500 PF00317 Ribonucleotide reductase, all-alpha domain LSO58_04505 PF00072 Response regulator receiver domain LSO58_04505 PF00486 Transcriptional regulatory protein, C terminal LSO58_04510 PF00672 HAMP domain LSO58_04510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_04510 PF00512 His Kinase A (phospho-acceptor) domain LSO58_04520 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LSO58_04525 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LSO58_04530 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LSO58_04530 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LSO58_04540 PF10531 SLBB domain LSO58_04540 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LSO58_04540 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LSO58_04545 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LSO58_04545 PF00384 Molybdopterin oxidoreductase LSO58_04545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LSO58_04550 PF00146 NADH dehydrogenase LSO58_04555 PF12838 4Fe-4S dicluster domain LSO58_04560 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LSO58_04565 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LSO58_04570 PF00361 Proton-conducting membrane transporter LSO58_04570 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LSO58_04575 PF00361 Proton-conducting membrane transporter LSO58_04580 PF00361 Proton-conducting membrane transporter LSO58_04590 PF07715 TonB-dependent Receptor Plug Domain LSO58_04590 PF07660 Secretin and TonB N terminus short domain LSO58_04590 PF00593 TonB dependent receptor LSO58_04595 PF07715 TonB-dependent Receptor Plug Domain LSO58_04595 PF00593 TonB dependent receptor LSO58_04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_04600 PF03466 LysR substrate binding domain LSO58_04605 PF00970 Oxidoreductase FAD-binding domain LSO58_04605 PF00175 Oxidoreductase NAD-binding domain LSO58_04620 PF05552 Conserved TM helix LSO58_04635 PF00291 Pyridoxal-phosphate dependent enzyme LSO58_04640 PF13533 Biotin-lipoyl like LSO58_04655 PF08241 Methyltransferase domain LSO58_04660 PF01810 LysE type translocator LSO58_04675 PF01979 Amidohydrolase family LSO58_04680 PF00860 Permease family LSO58_04685 PF03171 2OG-Fe(II) oxygenase superfamily LSO58_04685 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LSO58_04695 PF16123 Hydroxyacylglutathione hydrolase C-terminus LSO58_04695 PF00753 Metallo-beta-lactamase superfamily LSO58_04700 PF09334 tRNA synthetases class I (M) LSO58_04700 PF01588 Putative tRNA binding domain LSO58_04710 PF10609 NUBPL iron-transfer P-loop NTPase LSO58_04715 PF01048 Phosphorylase superfamily LSO58_04730 PF00692 dUTPase LSO58_04770 PF13817 IS66 C-terminal element LSO58_04770 PF03050 Transposase IS66 family LSO58_04770 PF13005 zinc-finger binding domain of transposase IS66 LSO58_04770 PF13007 Transposase C of IS166 homeodomain LSO58_04785 PF00551 Formyl transferase LSO58_04790 PF02769 AIR synthase related protein, C-terminal domain LSO58_04790 PF00586 AIR synthase related protein, N-terminal domain LSO58_04795 PF01594 AI-2E family transporter LSO58_04800 PF08299 Bacterial dnaA protein helix-turn-helix LSO58_04800 PF11638 DnaA N-terminal domain LSO58_04800 PF00308 Bacterial dnaA protein LSO58_04815 PF00764 Arginosuccinate synthase LSO58_04820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_04820 PF03466 LysR substrate binding domain LSO58_04825 PF00892 EamA-like transporter family LSO58_04830 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO58_04830 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_04840 PF13356 Arm DNA-binding domain LSO58_04840 PF00589 Phage integrase family LSO58_04920 PF00529 HlyD membrane-fusion protein of T1SS LSO58_04920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_04925 PF00873 AcrB/AcrD/AcrF family LSO58_04945 PF07690 Major Facilitator Superfamily LSO58_04960 PF01545 Cation efflux family LSO58_04960 PF16916 Dimerisation domain of Zinc Transporter LSO58_04965 PF02417 Chromate transporter LSO58_04970 PF09828 Chromate resistance exported protein LSO58_04975 PF13676 TIR domain LSO58_05000 PF00296 Luciferase-like monooxygenase LSO58_05005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LSO58_05010 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_05015 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_05015 PF12911 N-terminal TM domain of oligopeptide transport permease C LSO58_05020 PF00005 ABC transporter LSO58_05020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LSO58_05025 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO58_05025 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_05025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_05035 PF00005 ABC transporter LSO58_05035 PF00664 ABC transporter transmembrane region LSO58_05040 PF00664 ABC transporter transmembrane region LSO58_05040 PF00005 ABC transporter LSO58_05045 PF00296 Luciferase-like monooxygenase LSO58_05050 PF00158 Sigma-54 interaction domain LSO58_05055 PF00902 Sec-independent protein translocase protein (TatC) LSO58_05060 PF02416 mttA/Hcf106 family LSO58_05065 PF02416 mttA/Hcf106 family LSO58_05070 PF00005 ABC transporter LSO58_05075 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_05080 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_05085 PF09084 NMT1/THI5 like LSO58_05090 PF00296 Luciferase-like monooxygenase LSO58_05095 PF03544 Gram-negative bacterial TonB protein C-terminal LSO58_05100 PF01618 MotA/TolQ/ExbB proton channel family LSO58_05105 PF02472 Biopolymer transport protein ExbD/TolR LSO58_05110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LSO58_05120 PF00593 TonB dependent receptor LSO58_05120 PF07715 TonB-dependent Receptor Plug Domain LSO58_05125 PF00296 Luciferase-like monooxygenase LSO58_05135 PF03466 LysR substrate binding domain LSO58_05135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_05145 PF12697 Alpha/beta hydrolase family LSO58_05170 PF03328 HpcH/HpaI aldolase/citrate lyase family LSO58_05175 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_05175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_05175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_05180 PF03466 LysR substrate binding domain LSO58_05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_05185 PF00083 Sugar (and other) transporter LSO58_05205 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_05210 PF00005 ABC transporter LSO58_05210 PF03459 TOBE domain LSO58_05215 PF02803 Thiolase, C-terminal domain LSO58_05215 PF00108 Thiolase, N-terminal domain LSO58_05220 PF02667 Short chain fatty acid transporter LSO58_05225 PF01144 Coenzyme A transferase LSO58_05235 PF13737 Transposase DDE domain LSO58_05255 PF01126 Heme oxygenase LSO58_05260 PF04542 Sigma-70 region 2 LSO58_05260 PF08281 Sigma-70, region 4 LSO58_05270 PF00593 TonB dependent receptor LSO58_05270 PF07715 TonB-dependent Receptor Plug Domain LSO58_05280 PF03573 outer membrane porin, OprD family LSO58_05285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_05285 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_05285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_05295 PF00171 Aldehyde dehydrogenase family LSO58_05300 PF00378 Enoyl-CoA hydratase/isomerase LSO58_05305 PF07690 Major Facilitator Superfamily LSO58_05315 PF17932 Tetracyclin repressor-like, C-terminal domain LSO58_05315 PF00440 Bacterial regulatory proteins, tetR family LSO58_05325 PF00106 short chain dehydrogenase LSO58_05330 PF00743 Flavin-binding monooxygenase-like LSO58_05335 PF04072 Leucine carboxyl methyltransferase LSO58_05340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO58_05340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO58_05340 PF11890 Domain of unknown function (DUF3410) LSO58_05345 PF00152 tRNA synthetases class II (D, K and N) LSO58_05355 PF18073 Rubredoxin metal binding domain LSO58_05360 PF00324 Amino acid permease LSO58_05370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LSO58_05370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LSO58_05375 PF01678 Diaminopimelate epimerase LSO58_05380 PF14581 SseB protein C-terminal domain LSO58_05380 PF07179 SseB protein N-terminal domain LSO58_05385 PF00561 alpha/beta hydrolase fold LSO58_05390 PF00589 Phage integrase family LSO58_05390 PF02899 Phage integrase, N-terminal SAM-like domain LSO58_05395 PF01012 Electron transfer flavoprotein domain LSO58_05400 PF01012 Electron transfer flavoprotein domain LSO58_05400 PF00766 Electron transfer flavoprotein FAD-binding domain LSO58_05405 PF03989 DNA gyrase C-terminal domain, beta-propeller LSO58_05405 PF00521 DNA gyrase/topoisomerase IV, subunit A LSO58_05410 PF09278 MerR, DNA binding LSO58_05410 PF00376 MerR family regulatory protein LSO58_05420 PF00561 alpha/beta hydrolase fold LSO58_05465 PF03695 Uncharacterised protein family (UPF0149) LSO58_05470 PF00557 Metallopeptidase family M24 LSO58_05470 PF05195 Aminopeptidase P, N-terminal domain LSO58_05475 PF01494 FAD binding domain LSO58_05480 PF01494 FAD binding domain LSO58_05490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LSO58_05495 PF04348 LppC putative lipoprotein LSO58_05500 PF02021 Uncharacterised protein family UPF0102 LSO58_05505 PF04972 BON domain LSO58_05515 PF09297 NADH pyrophosphatase zinc ribbon domain LSO58_05515 PF00293 NUDIX domain LSO58_05525 PF00929 Exonuclease LSO58_05530 PF01464 Transglycosylase SLT domain LSO58_05530 PF01476 LysM domain LSO58_05530 PF01464 Transglycosylase SLT domain LSO58_05530 PF01476 LysM domain LSO58_05535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LSO58_05540 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_05545 PF12911 N-terminal TM domain of oligopeptide transport permease C LSO58_05545 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_05550 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LSO58_05550 PF00005 ABC transporter LSO58_05555 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_05555 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO58_05570 PF00576 HIUase/Transthyretin family LSO58_05575 PF03971 Monomeric isocitrate dehydrogenase LSO58_05580 PF00849 RNA pseudouridylate synthase LSO58_05585 PF00180 Isocitrate/isopropylmalate dehydrogenase LSO58_05590 PF00375 Sodium:dicarboxylate symporter family LSO58_05595 PF02567 Phenazine biosynthesis-like protein LSO58_05600 PF00654 Voltage gated chloride channel LSO58_05605 PF05193 Peptidase M16 inactive domain LSO58_05605 PF00675 Insulinase (Peptidase family M16) LSO58_05660 PF01037 Lrp/AsnC ligand binding domain LSO58_05680 PF07729 FCD domain LSO58_05680 PF00392 Bacterial regulatory proteins, gntR family LSO58_05690 PF00285 Citrate synthase, C-terminal domain LSO58_05695 PF00694 Aconitase C-terminal domain LSO58_05695 PF00330 Aconitase family (aconitate hydratase) LSO58_05710 PF00892 EamA-like transporter family LSO58_05715 PF00120 Glutamine synthetase, catalytic domain LSO58_05715 PF03951 Glutamine synthetase, beta-Grasp domain LSO58_05730 PF00155 Aminotransferase class I and II LSO58_05740 PF00444 Ribosomal protein L36 LSO58_05745 PF00990 Diguanylate cyclase, GGDEF domain LSO58_05745 PF08448 PAS fold LSO58_05755 PF17757 UvrB interaction domain LSO58_05755 PF12344 Ultra-violet resistance protein B LSO58_05755 PF04851 Type III restriction enzyme, res subunit LSO58_05755 PF00271 Helicase conserved C-terminal domain LSO58_05755 PF02151 UvrB/uvrC motif LSO58_05760 PF08212 Lipocalin-like domain LSO58_05765 PF00892 EamA-like transporter family LSO58_05770 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LSO58_05770 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LSO58_05785 PF01018 GTP1/OBG LSO58_05785 PF01926 50S ribosome-binding GTPase LSO58_05790 PF00696 Amino acid kinase family LSO58_05790 PF01472 PUA domain LSO58_05800 PF07759 Protein of unknown function (DUF1615) LSO58_05805 PF01207 Dihydrouridine synthase (Dus) LSO58_05815 PF03060 Nitronate monooxygenase LSO58_05820 PF13520 Amino acid permease LSO58_05825 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LSO58_05830 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LSO58_05835 PF01330 RuvA N terminal domain LSO58_05835 PF07499 RuvA, C-terminal domain LSO58_05860 PF02566 OsmC-like protein LSO58_05865 PF06826 Predicted Permease Membrane Region LSO58_05865 PF02080 TrkA-C domain LSO58_05870 PF00155 Aminotransferase class I and II LSO58_05875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_05875 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_05875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_05890 PF01842 ACT domain LSO58_05890 PF01817 Chorismate mutase type II LSO58_05890 PF00800 Prephenate dehydratase LSO58_05895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LSO58_05905 PF07687 Peptidase dimerisation domain LSO58_05905 PF01546 Peptidase family M20/M25/M40 LSO58_05910 PF03883 Peroxide stress protein YaaA LSO58_05930 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_05930 PF13192 Thioredoxin domain LSO58_05950 PF00578 AhpC/TSA family LSO58_05950 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO58_05955 PF00270 DEAD/DEAH box helicase LSO58_05955 PF11898 Domain of unknown function (DUF3418) LSO58_05955 PF04408 Helicase associated domain (HA2) LSO58_05955 PF00271 Helicase conserved C-terminal domain LSO58_05955 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LSO58_05960 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LSO58_05960 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LSO58_05965 PF00384 Molybdopterin oxidoreductase LSO58_05970 PF02634 FdhD/NarQ family LSO58_05980 PF00324 Amino acid permease LSO58_05990 PF00929 Exonuclease LSO58_05995 PF01979 Amidohydrolase family LSO58_06000 PF00360 Phytochrome region LSO58_06000 PF00563 EAL domain LSO58_06000 PF01590 GAF domain LSO58_06000 PF00990 Diguanylate cyclase, GGDEF domain LSO58_06020 PF08032 RNA 2'-O ribose methyltransferase substrate binding LSO58_06020 PF00588 SpoU rRNA Methylase family LSO58_06025 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LSO58_06035 PF00691 OmpA family LSO58_06040 PF04052 TolB amino-terminal domain LSO58_06040 PF07676 WD40-like Beta Propeller Repeat LSO58_06050 PF02472 Biopolymer transport protein ExbD/TolR LSO58_06055 PF01618 MotA/TolQ/ExbB proton channel family LSO58_06060 PF03061 Thioesterase superfamily LSO58_06065 PF05496 Holliday junction DNA helicase RuvB P-loop domain LSO58_06065 PF05491 RuvB C-terminal winged helix domain LSO58_06065 PF17864 RuvB AAA lid domain LSO58_06070 PF01330 RuvA N terminal domain LSO58_06070 PF07499 RuvA, C-terminal domain LSO58_06075 PF01966 HD domain LSO58_06080 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LSO58_06085 PF00005 ABC transporter LSO58_06090 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_06095 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LSO58_06100 PF13360 PQQ-like domain LSO58_06105 PF01494 FAD binding domain LSO58_06110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_06110 PF03466 LysR substrate binding domain LSO58_06115 PF03573 outer membrane porin, OprD family LSO58_06120 PF07690 Major Facilitator Superfamily LSO58_06125 PF03466 LysR substrate binding domain LSO58_06125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_06130 PF00355 Rieske [2Fe-2S] domain LSO58_06130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LSO58_06135 PF00866 Ring hydroxylating beta subunit LSO58_06140 PF00970 Oxidoreductase FAD-binding domain LSO58_06140 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO58_06140 PF00175 Oxidoreductase NAD-binding domain LSO58_06145 PF00106 short chain dehydrogenase LSO58_06150 PF03594 Benzoate membrane transport protein LSO58_06155 PF00775 Dioxygenase LSO58_06155 PF04444 Catechol dioxygenase N terminus LSO58_06160 PF01926 50S ribosome-binding GTPase LSO58_06165 PF01926 50S ribosome-binding GTPase LSO58_06170 PF03466 LysR substrate binding domain LSO58_06170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_06175 PF13378 Enolase C-terminal domain-like LSO58_06175 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LSO58_06180 PF02426 Muconolactone delta-isomerase LSO58_06200 PF12146 Serine aminopeptidase, S33 LSO58_06205 PF14525 AraC-binding-like domain LSO58_06205 PF12833 Helix-turn-helix domain LSO58_06210 PF01738 Dienelactone hydrolase family LSO58_06225 PF01613 Flavin reductase like domain LSO58_06240 PF00175 Oxidoreductase NAD-binding domain LSO58_06240 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO58_06240 PF00970 Oxidoreductase FAD-binding domain LSO58_06245 PF00866 Ring hydroxylating beta subunit LSO58_06250 PF00355 Rieske [2Fe-2S] domain LSO58_06250 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LSO58_06255 PF13340 Putative transposase of IS4/5 family (DUF4096) LSO58_06265 PF09190 DALR domain LSO58_06265 PF01406 tRNA synthetases class I (C) catalytic domain LSO58_06270 PF01380 SIS domain LSO58_06270 PF00571 CBS domain LSO58_06285 PF03968 OstA-like protein LSO58_06290 PF00005 ABC transporter LSO58_06290 PF12399 Branched-chain amino acid ATP-binding cassette transporter LSO58_06310 PF01205 Uncharacterized protein family UPF0029 LSO58_06315 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_06325 PF01596 O-methyltransferase LSO58_06335 PF00037 4Fe-4S binding domain LSO58_06335 PF11953 Domain of unknown function (DUF3470) LSO58_06345 PF01624 MutS domain I LSO58_06345 PF05188 MutS domain II LSO58_06345 PF05190 MutS family domain IV LSO58_06345 PF00488 MutS domain V LSO58_06345 PF05192 MutS domain III LSO58_06375 PF04542 Sigma-70 region 2 LSO58_06375 PF08281 Sigma-70, region 4 LSO58_06385 PF07715 TonB-dependent Receptor Plug Domain LSO58_06385 PF00593 TonB dependent receptor LSO58_06410 PF05656 Protein of unknown function (DUF805) LSO58_06425 PF07715 TonB-dependent Receptor Plug Domain LSO58_06425 PF00593 TonB dependent receptor LSO58_06450 PF07859 alpha/beta hydrolase fold LSO58_06455 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_06455 PF00107 Zinc-binding dehydrogenase LSO58_06460 PF00171 Aldehyde dehydrogenase family LSO58_06465 PF02954 Bacterial regulatory protein, Fis family LSO58_06465 PF13426 PAS domain LSO58_06465 PF00158 Sigma-54 interaction domain LSO58_06520 PF07669 Eco57I restriction-modification methylase LSO58_06530 PF07669 Eco57I restriction-modification methylase LSO58_06535 PF02384 N-6 DNA Methylase LSO58_06550 PF02661 Fic/DOC family LSO58_06560 PF07963 Prokaryotic N-terminal methylation motif LSO58_06560 PF14245 Type IV pilin PilA LSO58_06585 PF07963 Prokaryotic N-terminal methylation motif LSO58_06585 PF00114 Pilin (bacterial filament) LSO58_06605 PF13005 zinc-finger binding domain of transposase IS66 LSO58_06605 PF13817 IS66 C-terminal element LSO58_06605 PF03050 Transposase IS66 family LSO58_06605 PF13007 Transposase C of IS166 homeodomain LSO58_06635 PF00145 C-5 cytosine-specific DNA methylase LSO58_06645 PF00672 HAMP domain LSO58_06645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_06645 PF18698 Histidine kinase sensor domain LSO58_06645 PF00512 His Kinase A (phospho-acceptor) domain LSO58_06655 PF00717 Peptidase S24-like LSO58_06710 PF03869 Arc-like DNA binding domain LSO58_06790 PF17482 Phage tail sheath C-terminal domain LSO58_06790 PF04984 Phage tail sheath protein subtilisin-like domain LSO58_07135 PF01381 Helix-turn-helix LSO58_07140 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB LSO58_07280 PF00589 Phage integrase family LSO58_07290 PF11992 Domain of unknown function (DUF3488) LSO58_07290 PF13559 Domain of unknown function (DUF4129) LSO58_07290 PF01841 Transglutaminase-like superfamily LSO58_07295 PF04055 Radical SAM superfamily LSO58_07300 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_07300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO58_07305 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LSO58_07320 PF00557 Metallopeptidase family M24 LSO58_07325 PF00318 Ribosomal protein S2 LSO58_07330 PF00889 Elongation factor TS LSO58_07360 PF03330 Lytic transglycolase LSO58_07360 PF05036 Sporulation related domain LSO58_07365 PF13406 Transglycosylase SLT domain LSO58_07370 PF01098 Cell cycle protein LSO58_07380 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LSO58_07380 PF14489 QueF-like protein LSO58_07385 PF01061 ABC-2 type transporter LSO58_07390 PF00005 ABC transporter LSO58_07420 PF00561 alpha/beta hydrolase fold LSO58_07430 PF08521 Two-component sensor kinase N-terminal LSO58_07430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_07430 PF00512 His Kinase A (phospho-acceptor) domain LSO58_07435 PF00486 Transcriptional regulatory protein, C terminal LSO58_07435 PF00072 Response regulator receiver domain LSO58_07440 PF08019 Phosphoethanolamine transferase EptA/EptB LSO58_07440 PF00884 Sulfatase LSO58_07455 PF01569 PAP2 superfamily LSO58_07465 PF00582 Universal stress protein family LSO58_07470 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO58_07475 PF00768 D-alanyl-D-alanine carboxypeptidase LSO58_07475 PF07943 Penicillin-binding protein 5, C-terminal domain LSO58_07485 PF02581 Thiamine monophosphate synthase LSO58_07490 PF00202 Aminotransferase class-III LSO58_07495 PF03928 Haem-degrading LSO58_07500 PF00849 RNA pseudouridylate synthase LSO58_07505 PF18339 RapA N-terminal Tudor like domain 1 LSO58_07505 PF00176 SNF2 family N-terminal domain LSO58_07505 PF12137 RNA polymerase recycling family C-terminal LSO58_07505 PF00271 Helicase conserved C-terminal domain LSO58_07505 PF18337 RapA N-terminal Tudor like domain LSO58_07510 PF00210 Ferritin-like domain LSO58_07515 PF00440 Bacterial regulatory proteins, tetR family LSO58_07520 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO58_07520 PF00175 Oxidoreductase NAD-binding domain LSO58_07520 PF00970 Oxidoreductase FAD-binding domain LSO58_07525 PF00487 Fatty acid desaturase LSO58_07535 PF00202 Aminotransferase class-III LSO58_07540 PF00282 Pyridoxal-dependent decarboxylase conserved domain LSO58_07545 PF12849 PBP superfamily domain LSO58_07550 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_07555 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_07560 PF00005 ABC transporter LSO58_07565 PF01343 Peptidase family S49 LSO58_07565 PF08496 Peptidase family S49 N-terminal LSO58_07575 PF00206 Lyase LSO58_07575 PF08328 Adenylosuccinate lyase C-terminal LSO58_07580 PF04356 Protein of unknown function (DUF489) LSO58_07590 PF00293 NUDIX domain LSO58_07595 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_07600 PF00768 D-alanyl-D-alanine carboxypeptidase LSO58_07600 PF07943 Penicillin-binding protein 5, C-terminal domain LSO58_07615 PF01975 Survival protein SurE LSO58_07620 PF01551 Peptidase family M23 LSO58_07620 PF01476 LysM domain LSO58_07625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_07625 PF03466 LysR substrate binding domain LSO58_07630 PF00202 Aminotransferase class-III LSO58_07635 PF00462 Glutaredoxin LSO58_07640 PF01743 Poly A polymerase head domain LSO58_07640 PF12627 Probable RNA and SrmB- binding site of polymerase A LSO58_07645 PF00390 Malic enzyme, N-terminal domain LSO58_07645 PF03949 Malic enzyme, NAD binding domain LSO58_07645 PF01515 Phosphate acetyl/butaryl transferase LSO58_07655 PF04452 RNA methyltransferase LSO58_07660 PF02219 Methylenetetrahydrofolate reductase LSO58_07665 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LSO58_07665 PF05221 S-adenosyl-L-homocysteine hydrolase LSO58_07680 PF06100 MCRA family LSO58_07685 PF00083 Sugar (and other) transporter LSO58_07685 PF08946 Osmosensory transporter coiled coil LSO58_07690 PF05230 MASE2 domain LSO58_07690 PF00990 Diguanylate cyclase, GGDEF domain LSO58_07700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_07700 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_07700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_07700 PF09317 Domain of unknown function (DUF1974) LSO58_07705 PF02390 Putative methyltransferase LSO58_07710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_07710 PF07730 Histidine kinase LSO58_07710 PF05231 MASE1 LSO58_07715 PF00196 Bacterial regulatory proteins, luxR family LSO58_07715 PF00072 Response regulator receiver domain LSO58_07720 PF05658 Head domain of trimeric autotransporter adhesin LSO58_07720 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO58_07720 PF03895 YadA-like membrane anchor domain LSO58_07725 PF14497 Glutathione S-transferase, C-terminal domain LSO58_07725 PF02798 Glutathione S-transferase, N-terminal domain LSO58_07735 PF05690 Thiazole biosynthesis protein ThiG LSO58_07750 PF00140 Sigma-70 factor, region 1.2 LSO58_07750 PF04542 Sigma-70 region 2 LSO58_07750 PF04545 Sigma-70, region 4 LSO58_07760 PF00313 'Cold-shock' DNA-binding domain LSO58_07765 PF00270 DEAD/DEAH box helicase LSO58_07765 PF00271 Helicase conserved C-terminal domain LSO58_07775 PF00881 Nitroreductase family LSO58_07780 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LSO58_07780 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LSO58_07800 PF01180 Dihydroorotate dehydrogenase LSO58_07805 PF02674 Colicin V production protein LSO58_07810 PF00156 Phosphoribosyl transferase domain LSO58_07825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO58_07825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO58_07830 PF01435 Peptidase family M48 LSO58_07830 PF13181 Tetratricopeptide repeat LSO58_07840 PF09424 Yqey-like protein LSO58_07845 PF01165 Ribosomal protein S21 LSO58_07850 PF00814 Glycoprotease family LSO58_07860 PF01230 HIT domain LSO58_07870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO58_07870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO58_07880 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO58_07885 PF02575 YbaB/EbfC DNA-binding family LSO58_07890 PF13662 Toprim domain LSO58_07890 PF02132 RecR protein LSO58_07895 PF00570 HRDC domain LSO58_07895 PF01612 3'-5' exonuclease LSO58_07900 PF05166 YcgL domain LSO58_07910 PF17862 AAA+ lid domain LSO58_07910 PF01434 Peptidase family M41 LSO58_07910 PF00004 ATPase family associated with various cellular activities (AAA) LSO58_07920 PF01281 Ribosomal protein L9, N-terminal domain LSO58_07920 PF03948 Ribosomal protein L9, C-terminal domain LSO58_07925 PF01084 Ribosomal protein S18 LSO58_07930 PF01250 Ribosomal protein S6 LSO58_07935 PF01040 UbiA prenyltransferase family LSO58_07940 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LSO58_07945 PF00510 Cytochrome c oxidase subunit III LSO58_07950 PF00115 Cytochrome C and Quinol oxidase polypeptide I LSO58_07955 PF06481 COX Aromatic Rich Motif LSO58_07955 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LSO58_07965 PF00391 PEP-utilising enzyme, mobile domain LSO58_07965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LSO58_07965 PF02896 PEP-utilising enzyme, TIM barrel domain LSO58_07970 PF03618 Kinase/pyrophosphorylase LSO58_07975 PF00296 Luciferase-like monooxygenase LSO58_07985 PF00472 RF-1 domain LSO58_07985 PF03462 PCRF domain LSO58_07990 PF13847 Methyltransferase domain LSO58_07990 PF17827 PrmC N-terminal domain LSO58_07995 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_08000 PF09084 NMT1/THI5 like LSO58_08005 PF12833 Helix-turn-helix domain LSO58_08010 PF00106 short chain dehydrogenase LSO58_08015 PF13193 AMP-binding enzyme C-terminal domain LSO58_08015 PF00501 AMP-binding enzyme LSO58_08020 PF01613 Flavin reductase like domain LSO58_08025 PF05175 Methyltransferase small domain LSO58_08030 PF01264 Chorismate synthase LSO58_08055 PF03891 Domain of unknown function (DUF333) LSO58_08060 PF02673 Bacitracin resistance protein BacA LSO58_08085 PF12833 Helix-turn-helix domain LSO58_08085 PF12852 Cupin LSO58_08090 PF00487 Fatty acid desaturase LSO58_08095 PF00583 Acetyltransferase (GNAT) family LSO58_08100 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_08100 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_08100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_08105 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_08105 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_08105 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_08110 PF03109 ABC1 family LSO58_08120 PF00899 ThiF family LSO58_08125 PF03109 ABC1 family LSO58_08130 PF02152 Dihydroneopterin aldolase LSO58_08140 PF03814 Potassium-transporting ATPase A subunit LSO58_08150 PF02669 K+-transporting ATPase, c chain LSO58_08155 PF13493 Domain of unknown function (DUF4118) LSO58_08155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_08155 PF00512 His Kinase A (phospho-acceptor) domain LSO58_08155 PF02702 Osmosensitive K+ channel His kinase sensor domain LSO58_08155 PF13492 GAF domain LSO58_08160 PF00486 Transcriptional regulatory protein, C terminal LSO58_08160 PF00072 Response regulator receiver domain LSO58_08170 PF03232 Ubiquinone biosynthesis protein COQ7 LSO58_08175 PF07690 Major Facilitator Superfamily LSO58_08180 PF01103 Surface antigen LSO58_08180 PF07244 Surface antigen variable number repeat LSO58_08180 PF17243 POTRA domain TamA domain 1 LSO58_08205 PF06434 Aconitate hydratase 2 N-terminus LSO58_08205 PF11791 Aconitate B N-terminal domain LSO58_08205 PF00330 Aconitase family (aconitate hydratase) LSO58_08215 PF01037 Lrp/AsnC ligand binding domain LSO58_08225 PF00294 pfkB family carbohydrate kinase LSO58_08235 PF02954 Bacterial regulatory protein, Fis family LSO58_08235 PF00072 Response regulator receiver domain LSO58_08235 PF00158 Sigma-54 interaction domain LSO58_08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_08240 PF00512 His Kinase A (phospho-acceptor) domain LSO58_08240 PF00989 PAS fold LSO58_08245 PF00919 Uncharacterized protein family UPF0004 LSO58_08245 PF18693 TRAM domain LSO58_08245 PF04055 Radical SAM superfamily LSO58_08250 PF00696 Amino acid kinase family LSO58_08255 PF01765 Ribosome recycling factor LSO58_08260 PF01255 Putative undecaprenyl diphosphate synthase LSO58_08270 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LSO58_08270 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LSO58_08270 PF13288 DXP reductoisomerase C-terminal domain LSO58_08275 PF13180 PDZ domain LSO58_08275 PF17820 PDZ domain LSO58_08275 PF02163 Peptidase family M50 LSO58_08280 PF01103 Surface antigen LSO58_08280 PF07244 Surface antigen variable number repeat LSO58_08290 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LSO58_08290 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_08295 PF07977 FabA-like domain LSO58_08300 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LSO58_08300 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_08315 PF02631 RecX family LSO58_08320 PF00154 recA bacterial DNA recombination protein LSO58_08325 PF01479 S4 domain LSO58_08330 PF13419 Haloacid dehalogenase-like hydrolase LSO58_08335 PF00459 Inositol monophosphatase family LSO58_08345 PF01757 Acyltransferase family LSO58_08350 PF01649 Ribosomal protein S20 LSO58_08355 PF13460 NAD(P)H-binding LSO58_08360 PF03737 Aldolase/RraA LSO58_08375 PF01645 Conserved region in glutamate synthase LSO58_08380 PF08007 Cupin superfamily protein LSO58_08385 PF03575 Peptidase family S51 LSO58_08390 PF02545 Maf-like protein LSO58_08400 PF00162 Phosphoglycerate kinase LSO58_08410 PF01116 Fructose-bisphosphate aldolase class-II LSO58_08420 PF00881 Nitroreductase family LSO58_08425 PF00149 Calcineurin-like phosphoesterase LSO58_08430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LSO58_08435 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO58_08435 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LSO58_08450 PF09992 Phosphodiester glycosidase LSO58_08460 PF05958 tRNA (Uracil-5-)-methyltransferase LSO58_08465 PF04229 GrpB protein LSO58_08470 PF00171 Aldehyde dehydrogenase family LSO58_08470 PF01619 Proline dehydrogenase LSO58_08470 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LSO58_08470 PF14850 DNA-binding domain of Proline dehydrogenase LSO58_08475 PF01037 Lrp/AsnC ligand binding domain LSO58_08480 PF00474 Sodium:solute symporter family LSO58_08485 PF02146 Sir2 family LSO58_08490 PF00083 Sugar (and other) transporter LSO58_08495 PF00561 alpha/beta hydrolase fold LSO58_08505 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_08505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO58_08525 PF00117 Glutamine amidotransferase class-I LSO58_08525 PF06418 CTP synthase N-terminus LSO58_08530 PF00793 DAHP synthetase I family LSO58_08535 PF03952 Enolase, N-terminal domain LSO58_08535 PF00113 Enolase, C-terminal TIM barrel domain LSO58_08540 PF04977 Septum formation initiator LSO58_08545 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LSO58_08550 PF01266 FAD dependent oxidoreductase LSO58_08560 PF00005 ABC transporter LSO58_08565 PF00072 Response regulator receiver domain LSO58_08565 PF00486 Transcriptional regulatory protein, C terminal LSO58_08570 PF07690 Major Facilitator Superfamily LSO58_08575 PF04324 BFD-like [2Fe-2S] binding domain LSO58_08575 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO58_08575 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO58_08575 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_08575 PF13806 Rieske-like [2Fe-2S] domain LSO58_08575 PF18267 Rubredoxin NAD+ reductase C-terminal domain LSO58_08580 PF04324 BFD-like [2Fe-2S] binding domain LSO58_08580 PF18267 Rubredoxin NAD+ reductase C-terminal domain LSO58_08580 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_08580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO58_08580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO58_08585 PF00384 Molybdopterin oxidoreductase LSO58_08585 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LSO58_08585 PF04324 BFD-like [2Fe-2S] binding domain LSO58_08585 PF01568 Molydopterin dinucleotide binding domain LSO58_08590 PF12804 MobA-like NTP transferase domain LSO58_08595 PF06463 Molybdenum Cofactor Synthesis C LSO58_08595 PF04055 Radical SAM superfamily LSO58_08605 PF02391 MoaE protein LSO58_08610 PF01967 MoaC family LSO58_08610 PF00994 Probable molybdopterin binding domain LSO58_08615 PF03453 MoeA N-terminal region (domain I and II) LSO58_08615 PF00994 Probable molybdopterin binding domain LSO58_08615 PF03454 MoeA C-terminal region (domain IV) LSO58_08625 PF01638 HxlR-like helix-turn-helix LSO58_08630 PF00155 Aminotransferase class I and II LSO58_08630 PF00392 Bacterial regulatory proteins, gntR family LSO58_08635 PF00892 EamA-like transporter family LSO58_08655 PF02635 DsrE/DsrF-like family LSO58_08660 PF16363 GDP-mannose 4,6 dehydratase LSO58_08665 PF00206 Lyase LSO58_08665 PF10415 Fumarase C C-terminus LSO58_08690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_08690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_08690 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_08705 PF00106 short chain dehydrogenase LSO58_08730 PF13091 PLD-like domain LSO58_08735 PF02583 Metal-sensitive transcriptional repressor LSO58_08740 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_08740 PF00107 Zinc-binding dehydrogenase LSO58_08750 PF00793 DAHP synthetase I family LSO58_08755 PF01597 Glycine cleavage H-protein LSO58_08760 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LSO58_08760 PF12833 Helix-turn-helix domain LSO58_08770 PF00664 ABC transporter transmembrane region LSO58_08770 PF00005 ABC transporter LSO58_08775 PF00924 Mechanosensitive ion channel LSO58_08780 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LSO58_08790 PF00375 Sodium:dicarboxylate symporter family LSO58_08815 PF00107 Zinc-binding dehydrogenase LSO58_08815 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_08825 PF13533 Biotin-lipoyl like LSO58_08830 PF00873 AcrB/AcrD/AcrF family LSO58_08835 PF00873 AcrB/AcrD/AcrF family LSO58_08840 PF02321 Outer membrane efflux protein LSO58_08845 PF04542 Sigma-70 region 2 LSO58_08845 PF08281 Sigma-70, region 4 LSO58_08860 PF00206 Lyase LSO58_08860 PF10415 Fumarase C C-terminus LSO58_08865 PF03466 LysR substrate binding domain LSO58_08865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_08870 PF01047 MarR family LSO58_08880 PF12762 ISXO2-like transposase domain LSO58_08885 PF02661 Fic/DOC family LSO58_08890 PF01494 FAD binding domain LSO58_08895 PF09339 IclR helix-turn-helix domain LSO58_08895 PF01614 Bacterial transcriptional regulator LSO58_08900 PF13360 PQQ-like domain LSO58_08900 PF01011 PQQ enzyme repeat LSO58_08905 PF04966 Carbohydrate-selective porin, OprB family LSO58_08910 PF05048 Periplasmic copper-binding protein (NosD) LSO58_08915 PF01487 Type I 3-dehydroquinase LSO58_08920 PF00775 Dioxygenase LSO58_08925 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LSO58_08925 PF00775 Dioxygenase LSO58_08930 PF02627 Carboxymuconolactone decarboxylase family LSO58_08935 PF07690 Major Facilitator Superfamily LSO58_08940 PF00561 alpha/beta hydrolase fold LSO58_08945 PF10397 Adenylosuccinate lyase C-terminus LSO58_08945 PF00206 Lyase LSO58_08950 PF00108 Thiolase, N-terminal domain LSO58_08950 PF02803 Thiolase, C-terminal domain LSO58_08955 PF01144 Coenzyme A transferase LSO58_08960 PF01144 Coenzyme A transferase LSO58_08965 PF09339 IclR helix-turn-helix domain LSO58_08965 PF01614 Bacterial transcriptional regulator LSO58_08975 PF03466 LysR substrate binding domain LSO58_08975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_08980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO58_08985 PF00596 Class II Aldolase and Adducin N-terminal domain LSO58_08990 PF00378 Enoyl-CoA hydratase/isomerase LSO58_08995 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_08995 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO58_08995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_08995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_09005 PF07690 Major Facilitator Superfamily LSO58_09015 PF01144 Coenzyme A transferase LSO58_09020 PF01144 Coenzyme A transferase LSO58_09025 PF07690 Major Facilitator Superfamily LSO58_09030 PF07690 Major Facilitator Superfamily LSO58_09035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_09035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_09035 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_09040 PF00378 Enoyl-CoA hydratase/isomerase LSO58_09050 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LSO58_09050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO58_09050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO58_09055 PF02803 Thiolase, C-terminal domain LSO58_09055 PF00108 Thiolase, N-terminal domain LSO58_09065 PF02515 CoA-transferase family III LSO58_09070 PF07690 Major Facilitator Superfamily LSO58_09075 PF09339 IclR helix-turn-helix domain LSO58_09080 PF02515 CoA-transferase family III LSO58_09085 PF07690 Major Facilitator Superfamily LSO58_09100 PF00753 Metallo-beta-lactamase superfamily LSO58_09110 PF04143 Sulphur transport LSO58_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_09140 PF03466 LysR substrate binding domain LSO58_09145 PF03788 LrgA family LSO58_09150 PF04172 LrgB-like family LSO58_09155 PF02654 Cobalamin-5-phosphate synthase LSO58_09165 PF02277 Phosphoribosyltransferase LSO58_09170 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LSO58_09180 PF13419 Haloacid dehalogenase-like hydrolase LSO58_09190 PF04073 Aminoacyl-tRNA editing domain LSO58_09200 PF00291 Pyridoxal-phosphate dependent enzyme LSO58_09235 PF02515 CoA-transferase family III LSO58_09240 PF07690 Major Facilitator Superfamily LSO58_09245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_09245 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_09245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_09250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_09250 PF03466 LysR substrate binding domain LSO58_09260 PF02824 TGS domain LSO58_09260 PF04607 Region found in RelA / SpoT proteins LSO58_09260 PF13291 ACT domain LSO58_09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_09265 PF03466 LysR substrate binding domain LSO58_09270 PF00557 Metallopeptidase family M24 LSO58_09275 PF05525 Branched-chain amino acid transport protein LSO58_09295 PF00717 Peptidase S24-like LSO58_09300 PF13438 Domain of unknown function (DUF4113) LSO58_09300 PF00817 impB/mucB/samB family LSO58_09300 PF11799 impB/mucB/samB family C-terminal domain LSO58_09305 PF01220 Dehydroquinase class II LSO58_09310 PF00364 Biotin-requiring enzyme LSO58_09315 PF02785 Biotin carboxylase C-terminal domain LSO58_09315 PF00289 Biotin carboxylase, N-terminal domain LSO58_09315 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO58_09325 PF01425 Amidase LSO58_09330 PF12832 MFS_1 like family LSO58_09335 PF01261 Xylose isomerase-like TIM barrel LSO58_09345 PF00248 Aldo/keto reductase family LSO58_09355 PF00890 FAD binding domain LSO58_09360 PF00890 FAD binding domain LSO58_09370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LSO58_09370 PF01488 Shikimate / quinate 5-dehydrogenase LSO58_09370 PF08501 Shikimate dehydrogenase substrate binding domain LSO58_09375 PF07690 Major Facilitator Superfamily LSO58_09390 PF00440 Bacterial regulatory proteins, tetR family LSO58_09390 PF17932 Tetracyclin repressor-like, C-terminal domain LSO58_09395 PF04966 Carbohydrate-selective porin, OprB family LSO58_09400 PF07690 Major Facilitator Superfamily LSO58_09410 PF00890 FAD binding domain LSO58_09415 PF01614 Bacterial transcriptional regulator LSO58_09415 PF09339 IclR helix-turn-helix domain LSO58_09435 PF00216 Bacterial DNA-binding protein LSO58_09450 PF02082 Transcriptional regulator LSO58_09455 PF00266 Aminotransferase class-V LSO58_09460 PF01592 NifU-like N terminal domain LSO58_09465 PF01521 Iron-sulphur cluster biosynthesis LSO58_09470 PF07743 HSCB C-terminal oligomerisation domain LSO58_09470 PF00226 DnaJ domain LSO58_09475 PF00012 Hsp70 protein LSO58_09480 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO58_09485 PF00211 Adenylate and Guanylate cyclase catalytic domain LSO58_09495 PF02559 CarD-like/TRCF domain LSO58_09495 PF00270 DEAD/DEAH box helicase LSO58_09495 PF00271 Helicase conserved C-terminal domain LSO58_09495 PF03461 TRCF domain LSO58_09495 PF17757 UvrB interaction domain LSO58_09515 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LSO58_09515 PF01565 FAD binding domain LSO58_09520 PF01451 Low molecular weight phosphotyrosine protein phosphatase LSO58_09525 PF00465 Iron-containing alcohol dehydrogenase LSO58_09530 PF03061 Thioesterase superfamily LSO58_09535 PF12169 DNA polymerase III subunits gamma and tau domain III LSO58_09535 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LSO58_09535 PF12170 DNA polymerase III tau subunit V interacting with alpha LSO58_09540 PF07690 Major Facilitator Superfamily LSO58_09555 PF00144 Beta-lactamase LSO58_09560 PF01575 MaoC like domain LSO58_09570 PF00108 Thiolase, N-terminal domain LSO58_09570 PF02803 Thiolase, C-terminal domain LSO58_09575 PF07859 alpha/beta hydrolase fold LSO58_09590 PF03466 LysR substrate binding domain LSO58_09590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_09595 PF00923 Transaldolase/Fructose-6-phosphate aldolase LSO58_09600 PF01810 LysE type translocator LSO58_09605 PF03594 Benzoate membrane transport protein LSO58_09610 PF02308 MgtC family LSO58_09615 PF00689 Cation transporting ATPase, C-terminus LSO58_09615 PF00690 Cation transporter/ATPase, N-terminus LSO58_09630 PF00582 Universal stress protein family LSO58_09640 PF01433 Peptidase family M1 domain LSO58_09640 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LSO58_09640 PF11940 Domain of unknown function (DUF3458) Ig-like fold LSO58_09655 PF02110 Hydroxyethylthiazole kinase family LSO58_09660 PF06445 GyrI-like small molecule binding domain LSO58_09670 PF14493 Helix-turn-helix domain LSO58_09670 PF05970 PIF1-like helicase LSO58_09675 PF00465 Iron-containing alcohol dehydrogenase LSO58_09690 PF00171 Aldehyde dehydrogenase family LSO58_09695 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LSO58_09695 PF00117 Glutamine amidotransferase class-I LSO58_09705 PF04264 YceI-like domain LSO58_09720 PF00456 Transketolase, thiamine diphosphate binding domain LSO58_09720 PF02779 Transketolase, pyrimidine binding domain LSO58_09720 PF02780 Transketolase, C-terminal domain LSO58_09725 PF02772 S-adenosylmethionine synthetase, central domain LSO58_09725 PF02773 S-adenosylmethionine synthetase, C-terminal domain LSO58_09725 PF00438 S-adenosylmethionine synthetase, N-terminal domain LSO58_09740 PF00296 Luciferase-like monooxygenase LSO58_09750 PF02075 Crossover junction endodeoxyribonuclease RuvC LSO58_09755 PF03853 YjeF-related protein N-terminus LSO58_09755 PF01256 Carbohydrate kinase LSO58_09760 PF08331 Domain of unknown function (DUF1730) LSO58_09765 PF06968 Biotin and Thiamin Synthesis associated domain LSO58_09765 PF04055 Radical SAM superfamily LSO58_09780 PF00210 Ferritin-like domain LSO58_09785 PF07715 TonB-dependent Receptor Plug Domain LSO58_09785 PF00593 TonB dependent receptor LSO58_09800 PF01709 Transcriptional regulator LSO58_09815 PF00005 ABC transporter LSO58_09820 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_09825 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_09840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LSO58_09840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LSO58_09845 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LSO58_09850 PF17871 AAA lid domain LSO58_09850 PF02861 Clp amino terminal domain, pathogenicity island component LSO58_09850 PF10431 C-terminal, D2-small domain, of ClpB protein LSO58_09850 PF00004 ATPase family associated with various cellular activities (AAA) LSO58_09850 PF07724 AAA domain (Cdc48 subfamily) LSO58_09855 PF02617 ATP-dependent Clp protease adaptor protein ClpS LSO58_09865 PF02774 Semialdehyde dehydrogenase, dimerisation domain LSO58_09865 PF01118 Semialdehyde dehydrogenase, NAD binding domain LSO58_09880 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LSO58_09885 PF00585 C-terminal regulatory domain of Threonine dehydratase LSO58_09885 PF00291 Pyridoxal-phosphate dependent enzyme LSO58_09890 PF02080 TrkA-C domain LSO58_09890 PF02254 TrkA-N domain LSO58_09895 PF02386 Cation transport protein LSO58_09900 PF02253 Phospholipase A1 LSO58_09905 PF00675 Insulinase (Peptidase family M16) LSO58_09905 PF08367 Peptidase M16C associated LSO58_09905 PF05193 Peptidase M16 inactive domain LSO58_09910 PF00294 pfkB family carbohydrate kinase LSO58_09920 PF07290 Protein of unknown function (DUF1449) LSO58_09930 PF01654 Cytochrome bd terminal oxidase subunit I LSO58_09935 PF02322 Cytochrome bd terminal oxidase subunit II LSO58_09940 PF08173 Membrane bound YbgT-like protein LSO58_09960 PF00448 SRP54-type protein, GTPase domain LSO58_09960 PF02881 SRP54-type protein, helical bundle domain LSO58_09995 PF00571 CBS domain LSO58_09995 PF01380 SIS domain LSO58_10000 PF00772 DnaB-like helicase N terminal domain LSO58_10000 PF03796 DnaB-like helicase C terminal domain LSO58_10005 PF00842 Alanine racemase, C-terminal domain LSO58_10005 PF01168 Alanine racemase, N-terminal domain LSO58_10020 PF08379 Bacterial transglutaminase-like N-terminal region LSO58_10020 PF01841 Transglutaminase-like superfamily LSO58_10030 PF14403 Circularly permuted ATP-grasp type 2 LSO58_10040 PF01134 Glucose inhibited division protein A LSO58_10040 PF13932 GidA associated domain LSO58_10065 PF02954 Bacterial regulatory protein, Fis family LSO58_10070 PF01808 AICARFT/IMPCHase bienzyme LSO58_10070 PF02142 MGS-like domain LSO58_10075 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LSO58_10075 PF02843 Phosphoribosylglycinamide synthetase, C domain LSO58_10075 PF02844 Phosphoribosylglycinamide synthetase, N domain LSO58_10080 PF03180 NLPA lipoprotein LSO58_10085 PF00005 ABC transporter LSO58_10085 PF09383 NIL domain LSO58_10090 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_10110 PF16123 Hydroxyacylglutathione hydrolase C-terminus LSO58_10110 PF00753 Metallo-beta-lactamase superfamily LSO58_10135 PF03793 PASTA domain LSO58_10135 PF00069 Protein kinase domain LSO58_10170 PF02684 Lipid-A-disaccharide synthetase LSO58_10175 PF07715 TonB-dependent Receptor Plug Domain LSO58_10175 PF00593 TonB dependent receptor LSO58_10195 PF01925 Sulfite exporter TauE/SafE LSO58_10200 PF00793 DAHP synthetase I family LSO58_10210 PF02542 YgbB family LSO58_10220 PF01266 FAD dependent oxidoreductase LSO58_10225 PF03471 Transporter associated domain LSO58_10225 PF03741 Integral membrane protein TerC family LSO58_10240 PF01274 Malate synthase LSO58_10245 PF03969 AFG1-like ATPase LSO58_10265 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LSO58_10280 PF00216 Bacterial DNA-binding protein LSO58_10285 PF00575 S1 RNA binding domain LSO58_10290 PF02224 Cytidylate kinase LSO58_10300 PF14437 MafB19-like deaminase LSO58_10310 PF03167 Uracil DNA glycosylase superfamily LSO58_10320 PF03934 Type II secretion system (T2SS), protein K LSO58_10325 PF07963 Prokaryotic N-terminal methylation motif LSO58_10325 PF11612 Type II secretion system (T2SS), protein J LSO58_10330 PF07963 Prokaryotic N-terminal methylation motif LSO58_10330 PF02501 Type II secretion system (T2SS), protein I LSO58_10345 PF01026 TatD related DNase LSO58_10355 PF09115 DNA polymerase III, delta subunit, C terminal LSO58_10360 PF02348 Cytidylyltransferase LSO58_10365 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LSO58_10370 PF00664 ABC transporter transmembrane region LSO58_10370 PF00005 ABC transporter LSO58_10380 PF01618 MotA/TolQ/ExbB proton channel family LSO58_10385 PF17762 HTH domain found in ParB protein LSO58_10385 PF02195 ParB-like nuclease domain LSO58_10390 PF13614 AAA domain LSO58_10395 PF02527 rRNA small subunit methyltransferase G LSO58_10400 PF00483 Nucleotidyl transferase LSO58_10405 PF01636 Phosphotransferase enzyme family LSO58_10410 PF04453 LPS transport system D LSO58_10410 PF03968 OstA-like protein LSO58_10415 PF09312 SurA N-terminal domain LSO58_10415 PF00639 PPIC-type PPIASE domain LSO58_10420 PF17209 Hfq protein LSO58_10430 PF01119 DNA mismatch repair protein, C-terminal domain LSO58_10430 PF08676 MutL C terminal dimerisation domain LSO58_10435 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LSO58_10440 PF01479 S4 domain LSO58_10440 PF00849 RNA pseudouridylate synthase LSO58_10455 PF01479 S4 domain LSO58_10455 PF00849 RNA pseudouridylate synthase LSO58_10470 PF01975 Survival protein SurE LSO58_10480 PF04284 Protein of unknown function (DUF441) LSO58_10485 PF03707 Bacterial signalling protein N terminal repeat LSO58_10485 PF00990 Diguanylate cyclase, GGDEF domain LSO58_10485 PF00563 EAL domain LSO58_10490 PF03466 LysR substrate binding domain LSO58_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_10500 PF07690 Major Facilitator Superfamily LSO58_10505 PF00520 Ion transport protein LSO58_10505 PF00027 Cyclic nucleotide-binding domain LSO58_10510 PF00939 Sodium:sulfate symporter transmembrane region LSO58_10515 PF00171 Aldehyde dehydrogenase family LSO58_10525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_10525 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO58_10535 PF00296 Luciferase-like monooxygenase LSO58_10540 PF03180 NLPA lipoprotein LSO58_10545 PF00005 ABC transporter LSO58_10545 PF09383 NIL domain LSO58_10550 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_10555 PF01926 50S ribosome-binding GTPase LSO58_10555 PF06071 Protein of unknown function (DUF933) LSO58_10560 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO58_10560 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO58_10580 PF02222 ATP-grasp domain LSO58_10585 PF01909 Nucleotidyltransferase domain LSO58_10585 PF08335 GlnD PII-uridylyltransferase LSO58_10585 PF01966 HD domain LSO58_10590 PF00155 Aminotransferase class I and II LSO58_10595 PF00593 TonB dependent receptor LSO58_10595 PF07715 TonB-dependent Receptor Plug Domain LSO58_10605 PF12852 Cupin LSO58_10605 PF12833 Helix-turn-helix domain LSO58_10610 PF00255 Glutathione peroxidase LSO58_10615 PF01641 SelR domain LSO58_10620 PF00155 Aminotransferase class I and II LSO58_10625 PF17763 Glutaminase/Asparaginase C-terminal domain LSO58_10625 PF00710 Asparaginase, N-terminal LSO58_10630 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LSO58_10630 PF14579 Helix-hairpin-helix motif LSO58_10630 PF02811 PHP domain LSO58_10630 PF01336 OB-fold nucleic acid binding domain LSO58_10630 PF07733 Bacterial DNA polymerase III alpha NTPase domain LSO58_10635 PF00588 SpoU rRNA Methylase family LSO58_10640 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_10660 PF13737 Transposase DDE domain LSO58_10665 PF00990 Diguanylate cyclase, GGDEF domain LSO58_10690 PF02677 Epoxyqueuosine reductase QueH LSO58_10695 PF12697 Alpha/beta hydrolase family LSO58_10700 PF01979 Amidohydrolase family LSO58_10705 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_10710 PF00005 ABC transporter LSO58_10715 PF09084 NMT1/THI5 like LSO58_10725 PF07726 ATPase family associated with various cellular activities (AAA) LSO58_10725 PF17863 AAA lid domain LSO58_10730 PF04328 Selenoprotein, putative LSO58_10735 PF02554 Carbon starvation protein CstA LSO58_10735 PF13722 5TM C-terminal transporter carbon starvation CstA LSO58_10740 PF01132 Elongation factor P (EF-P) OB domain LSO58_10740 PF08207 Elongation factor P (EF-P) KOW-like domain LSO58_10740 PF09285 Elongation factor P, C-terminal LSO58_10745 PF04055 Radical SAM superfamily LSO58_10775 PF03050 Transposase IS66 family LSO58_10775 PF13817 IS66 C-terminal element LSO58_10775 PF13005 zinc-finger binding domain of transposase IS66 LSO58_10775 PF13007 Transposase C of IS166 homeodomain LSO58_10785 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_10785 PF14602 Hexapeptide repeat of succinyl-transferase LSO58_10785 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LSO58_10790 PF04055 Radical SAM superfamily LSO58_10795 PF06508 Queuosine biosynthesis protein QueC LSO58_10805 PF00578 AhpC/TSA family LSO58_10810 PF04264 YceI-like domain LSO58_10815 PF01467 Cytidylyltransferase-like LSO58_10815 PF00293 NUDIX domain LSO58_10820 PF00378 Enoyl-CoA hydratase/isomerase LSO58_10830 PF01784 NIF3 (NGG1p interacting factor 3) LSO58_10840 PF02769 AIR synthase related protein, C-terminal domain LSO58_10840 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LSO58_10840 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LSO58_10850 PF02470 MlaD protein LSO58_10855 PF04403 Paraquat-inducible protein A LSO58_10895 PF01979 Amidohydrolase family LSO58_10900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LSO58_10900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LSO58_10905 PF10672 S-adenosylmethionine-dependent methyltransferase LSO58_10905 PF02926 THUMP domain LSO58_10905 PF01170 Putative RNA methylase family UPF0020 LSO58_10915 PF17871 AAA lid domain LSO58_10915 PF02861 Clp amino terminal domain, pathogenicity island component LSO58_10915 PF00004 ATPase family associated with various cellular activities (AAA) LSO58_10915 PF07724 AAA domain (Cdc48 subfamily) LSO58_10915 PF10431 C-terminal, D2-small domain, of ClpB protein LSO58_10930 PF02566 OsmC-like protein LSO58_10935 PF00027 Cyclic nucleotide-binding domain LSO58_10935 PF13545 Crp-like helix-turn-helix domain LSO58_10940 PF00248 Aldo/keto reductase family LSO58_10955 PF00709 Adenylosuccinate synthetase LSO58_10960 PF13393 Histidyl-tRNA synthetase LSO58_10970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LSO58_10970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LSO58_10975 PF02272 DHHA1 domain LSO58_10975 PF01411 tRNA synthetases class II (A) LSO58_10975 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LSO58_10980 PF13840 ACT domain LSO58_10980 PF01842 ACT domain LSO58_10980 PF00696 Amino acid kinase family LSO58_10985 PF02599 Global regulator protein family LSO58_10990 PF01351 Ribonuclease HII LSO58_11005 PF00962 Adenosine/AMP deaminase LSO58_11010 PF00860 Permease family LSO58_11020 PF01740 STAS domain LSO58_11020 PF00916 Sulfate permease family LSO58_11025 PF07715 TonB-dependent Receptor Plug Domain LSO58_11025 PF00593 TonB dependent receptor LSO58_11030 PF00375 Sodium:dicarboxylate symporter family LSO58_11035 PF02885 Glycosyl transferase family, helical bundle domain LSO58_11035 PF00591 Glycosyl transferase family, a/b domain LSO58_11040 PF07023 Protein of unknown function (DUF1315) LSO58_11045 PF01513 ATP-NAD kinase LSO58_11050 PF00905 Penicillin binding protein transpeptidase domain LSO58_11050 PF00912 Transglycosylase LSO58_11050 PF14814 Bifunctional transglycosylase second domain LSO58_11060 PF00293 NUDIX domain LSO58_11070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_11070 PF00512 His Kinase A (phospho-acceptor) domain LSO58_11070 PF08521 Two-component sensor kinase N-terminal LSO58_11075 PF00072 Response regulator receiver domain LSO58_11075 PF00486 Transcriptional regulatory protein, C terminal LSO58_11080 PF04076 Bacterial OB fold (BOF) protein LSO58_11085 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LSO58_11085 PF00437 Type II/IV secretion system protein LSO58_11090 PF00990 Diguanylate cyclase, GGDEF domain LSO58_11090 PF07694 5TMR of 5TMR-LYT LSO58_11095 PF18389 TrmO C-terminal domain LSO58_11095 PF01980 tRNA-methyltransferase O LSO58_11100 PF00970 Oxidoreductase FAD-binding domain LSO58_11100 PF00175 Oxidoreductase NAD-binding domain LSO58_11105 PF00857 Isochorismatase family LSO58_11110 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LSO58_11115 PF16325 Peptidase family U32 C-terminal domain LSO58_11115 PF01136 Peptidase family U32 LSO58_11120 PF12838 4Fe-4S dicluster domain LSO58_11125 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_11125 PF13192 Thioredoxin domain LSO58_11135 PF05816 Toxic anion resistance protein (TelA) LSO58_11145 PF14760 Rnk N-terminus LSO58_11145 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO58_11150 PF00464 Serine hydroxymethyltransferase LSO58_11170 PF00375 Sodium:dicarboxylate symporter family LSO58_11180 PF01040 UbiA prenyltransferase family LSO58_11185 PF04345 Chorismate lyase LSO58_11195 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LSO58_11200 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LSO58_11205 PF02565 Recombination protein O C terminal LSO58_11205 PF11967 Recombination protein O N terminal LSO58_11215 PF07650 KH domain LSO58_11215 PF01926 50S ribosome-binding GTPase LSO58_11220 PF00035 Double-stranded RNA binding motif LSO58_11220 PF14622 Ribonuclease-III-like LSO58_11230 PF10502 Signal peptidase, peptidase S26 LSO58_11235 PF00679 Elongation factor G C-terminus LSO58_11235 PF00009 Elongation factor Tu GTP binding domain LSO58_11235 PF03144 Elongation factor Tu domain 2 LSO58_11235 PF06421 GTP-binding protein LepA C-terminus LSO58_11245 PF00120 Glutamine synthetase, catalytic domain LSO58_11250 PF13180 PDZ domain LSO58_11255 PF00890 FAD binding domain LSO58_11255 PF02910 Fumarate reductase flavoprotein C-term LSO58_11260 PF02223 Thymidylate kinase LSO58_11265 PF02618 YceG-like family LSO58_11270 PF01063 Amino-transferase class IV LSO58_11285 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_11290 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_11295 PF00005 ABC transporter LSO58_11295 PF12857 TOBE-like domain LSO58_11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_11300 PF03466 LysR substrate binding domain LSO58_11305 PF01197 Ribosomal protein L31 LSO58_11310 PF13593 SBF-like CPA transporter family (DUF4137) LSO58_11315 PF07690 Major Facilitator Superfamily LSO58_11320 PF05362 Lon protease (S16) C-terminal proteolytic domain LSO58_11320 PF13654 AAA domain LSO58_11325 PF13180 PDZ domain LSO58_11330 PF01784 NIF3 (NGG1p interacting factor 3) LSO58_11335 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO58_11335 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO58_11340 PF00117 Glutamine amidotransferase class-I LSO58_11345 PF00591 Glycosyl transferase family, a/b domain LSO58_11345 PF02885 Glycosyl transferase family, helical bundle domain LSO58_11350 PF00218 Indole-3-glycerol phosphate synthase LSO58_11365 PF02625 XdhC and CoxI family LSO58_11365 PF13478 XdhC Rossmann domain LSO58_11370 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LSO58_11370 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LSO58_11375 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO58_11375 PF01799 [2Fe-2S] binding domain LSO58_11380 PF01227 GTP cyclohydrolase I LSO58_11385 PF09335 SNARE associated Golgi protein LSO58_11390 PF07690 Major Facilitator Superfamily LSO58_11395 PF05675 Protein of unknown function (DUF817) LSO58_11400 PF01208 Uroporphyrinogen decarboxylase (URO-D) LSO58_11410 PF17954 Quercetinase C-terminal cupin domain LSO58_11410 PF02678 Pirin LSO58_11415 PF04851 Type III restriction enzyme, res subunit LSO58_11420 PF01555 DNA methylase LSO58_11450 PF00005 ABC transporter LSO58_11455 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_11465 PF03466 LysR substrate binding domain LSO58_11470 PF00355 Rieske [2Fe-2S] domain LSO58_11475 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO58_11475 PF03449 Transcription elongation factor, N-terminal LSO58_11480 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO58_11480 PF01464 Transglycosylase SLT domain LSO58_11490 PF01171 PP-loop family LSO58_11495 PF01551 Peptidase family M23 LSO58_11495 PF10145 Phage-related minor tail protein LSO58_11495 PF01464 Transglycosylase SLT domain LSO58_11500 PF01435 Peptidase family M48 LSO58_11510 PF03448 MgtE intracellular N domain LSO58_11510 PF00571 CBS domain LSO58_11510 PF01769 Divalent cation transporter LSO58_11515 PF00873 AcrB/AcrD/AcrF family LSO58_11520 PF01219 Prokaryotic diacylglycerol kinase LSO58_11540 PF00890 FAD binding domain LSO58_11540 PF02910 Fumarate reductase flavoprotein C-term LSO58_11545 PF00392 Bacterial regulatory proteins, gntR family LSO58_11545 PF07702 UTRA domain LSO58_11550 PF00581 Rhodanese-like domain LSO58_11555 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_11565 PF00266 Aminotransferase class-V LSO58_11570 PF00118 TCP-1/cpn60 chaperonin family LSO58_11575 PF00166 Chaperonin 10 Kd subunit LSO58_11590 PF00781 Diacylglycerol kinase catalytic domain LSO58_11595 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LSO58_11595 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LSO58_11605 PF01266 FAD dependent oxidoreductase LSO58_11605 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LSO58_11620 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LSO58_11620 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LSO58_11640 PF02595 Glycerate kinase family LSO58_11660 PF00809 Pterin binding enzyme LSO58_11665 PF01434 Peptidase family M41 LSO58_11665 PF00004 ATPase family associated with various cellular activities (AAA) LSO58_11665 PF06480 FtsH Extracellular LSO58_11665 PF17862 AAA+ lid domain LSO58_11670 PF01728 FtsJ-like methyltransferase LSO58_11675 PF01985 CRS1 / YhbY (CRM) domain LSO58_11690 PF00117 Glutamine amidotransferase class-I LSO58_11690 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LSO58_11695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO58_11695 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LSO58_11695 PF02142 MGS-like domain LSO58_11700 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO58_11700 PF03449 Transcription elongation factor, N-terminal LSO58_11710 PF00582 Universal stress protein family LSO58_11720 PF00582 Universal stress protein family LSO58_11725 PF13089 Polyphosphate kinase N-terminal domain LSO58_11725 PF02503 Polyphosphate kinase middle domain LSO58_11725 PF13090 Polyphosphate kinase C-terminal domain 2 LSO58_11725 PF17941 Polyphosphate kinase C-terminal domain 1 LSO58_11730 PF00912 Transglycosylase LSO58_11735 PF01694 Rhomboid family LSO58_11745 PF00005 ABC transporter LSO58_11750 PF13472 GDSL-like Lipase/Acylhydrolase family LSO58_11755 PF00484 Carbonic anhydrase LSO58_11760 PF12697 Alpha/beta hydrolase family LSO58_11770 PF07715 TonB-dependent Receptor Plug Domain LSO58_11770 PF00593 TonB dependent receptor LSO58_11775 PF07715 TonB-dependent Receptor Plug Domain LSO58_11775 PF00593 TonB dependent receptor LSO58_11780 PF01106 NifU-like domain LSO58_11780 PF01521 Iron-sulphur cluster biosynthesis LSO58_11790 PF00884 Sulfatase LSO58_11795 PF03781 Sulfatase-modifying factor enzyme 1 LSO58_11810 PF00291 Pyridoxal-phosphate dependent enzyme LSO58_11815 PF01384 Phosphate transporter family LSO58_11820 PF02965 Vitamin B12 dependent methionine synthase, activation domain LSO58_11820 PF02607 B12 binding domain LSO58_11820 PF02574 Homocysteine S-methyltransferase LSO58_11820 PF00809 Pterin binding enzyme LSO58_11820 PF02310 B12 binding domain LSO58_11825 PF01043 SecA preprotein cross-linking domain LSO58_11825 PF07517 SecA DEAD-like domain LSO58_11825 PF02810 SEC-C motif LSO58_11825 PF07516 SecA Wing and Scaffold domain LSO58_11830 PF04480 Protein of unknown function (DUF559) LSO58_11860 PF07690 Major Facilitator Superfamily LSO58_11870 PF04960 Glutaminase LSO58_11875 PF01327 Polypeptide deformylase LSO58_11890 PF00083 Sugar (and other) transporter LSO58_11895 PF02230 Phospholipase/Carboxylesterase LSO58_11905 PF04973 Nicotinamide mononucleotide transporter LSO58_11925 PF00535 Glycosyl transferase family 2 LSO58_11930 PF14883 Hypothetical glycosyl hydrolase family 13 LSO58_11930 PF01522 Polysaccharide deacetylase LSO58_11940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO58_11945 PF07152 YaeQ protein LSO58_11950 PF00375 Sodium:dicarboxylate symporter family LSO58_11955 PF07683 Cobalamin synthesis protein cobW C-terminal domain LSO58_11955 PF02492 CobW/HypB/UreG, nucleotide-binding domain LSO58_11965 PF13296 Putative type VI secretion system Rhs element Vgr LSO58_11965 PF04717 Type VI secretion system, phage-baseplate injector LSO58_11965 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LSO58_11970 PF00795 Carbon-nitrogen hydrolase LSO58_11970 PF02540 NAD synthase LSO58_11990 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO58_11990 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO58_11995 PF00152 tRNA synthetases class II (D, K and N) LSO58_11995 PF01336 OB-fold nucleic acid binding domain LSO58_12005 PF00156 Phosphoribosyl transferase domain LSO58_12010 PF00301 Rubredoxin LSO58_12015 PF18113 Rubredoxin binding C-terminal domain LSO58_12015 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_12020 PF00561 alpha/beta hydrolase fold LSO58_12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_12025 PF03466 LysR substrate binding domain LSO58_12040 PF00999 Sodium/hydrogen exchanger family LSO58_12050 PF03358 NADPH-dependent FMN reductase LSO58_12055 PF01638 HxlR-like helix-turn-helix LSO58_12065 PF00588 SpoU rRNA Methylase family LSO58_12070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LSO58_12070 PF14824 Sirohaem biosynthesis protein central LSO58_12070 PF10414 Sirohaem synthase dimerisation region LSO58_12075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO58_12075 PF02403 Seryl-tRNA synthetase N-terminal domain LSO58_12085 PF03548 Outer membrane lipoprotein carrier protein LolA LSO58_12095 PF01016 Ribosomal L27 protein LSO58_12100 PF00829 Ribosomal prokaryotic L21 protein LSO58_12105 PF00348 Polyprenyl synthetase LSO58_12115 PF01569 PAP2 superfamily LSO58_12120 PF00529 HlyD membrane-fusion protein of T1SS LSO58_12120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_12125 PF00873 AcrB/AcrD/AcrF family LSO58_12130 PF02321 Outer membrane efflux protein LSO58_12135 PF01906 Putative heavy-metal-binding LSO58_12140 PF01906 Putative heavy-metal-binding LSO58_12155 PF08264 Anticodon-binding domain of tRNA LSO58_12155 PF00133 tRNA synthetases class I (I, L, M and V) LSO58_12155 PF10458 Valyl tRNA synthetase tRNA binding arm LSO58_12170 PF00909 Ammonium Transporter Family LSO58_12180 PF08521 Two-component sensor kinase N-terminal LSO58_12180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_12180 PF00512 His Kinase A (phospho-acceptor) domain LSO58_12185 PF00072 Response regulator receiver domain LSO58_12185 PF00486 Transcriptional regulatory protein, C terminal LSO58_12190 PF07690 Major Facilitator Superfamily LSO58_12200 PF01734 Patatin-like phospholipase LSO58_12210 PF01145 SPFH domain / Band 7 family LSO58_12215 PF00348 Polyprenyl synthetase LSO58_12225 PF04303 PrpF protein LSO58_12230 PF00324 Amino acid permease LSO58_12240 PF06965 Na+/H+ antiporter 1 LSO58_12240 PF01343 Peptidase family S49 LSO58_12250 PF03772 Competence protein LSO58_12250 PF13567 Domain of unknown function (DUF4131) LSO58_12250 PF00753 Metallo-beta-lactamase superfamily LSO58_12255 PF00005 ABC transporter LSO58_12260 PF02687 FtsX-like permease family LSO58_12260 PF12704 MacB-like periplasmic core domain LSO58_12275 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LSO58_12285 PF00266 Aminotransferase class-V LSO58_12295 PF13533 Biotin-lipoyl like LSO58_12310 PF04355 SmpA / OmlA family LSO58_12310 PF00691 OmpA family LSO58_12315 PF03895 YadA-like membrane anchor domain LSO58_12315 PF05658 Head domain of trimeric autotransporter adhesin LSO58_12315 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO58_12315 PF13018 Extended Signal Peptide of Type V secretion system LSO58_12320 PF13018 Extended Signal Peptide of Type V secretion system LSO58_12320 PF03895 YadA-like membrane anchor domain LSO58_12320 PF05658 Head domain of trimeric autotransporter adhesin LSO58_12320 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO58_12325 PF13018 Extended Signal Peptide of Type V secretion system LSO58_12325 PF05658 Head domain of trimeric autotransporter adhesin LSO58_12325 PF03895 YadA-like membrane anchor domain LSO58_12325 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO58_12330 PF03895 YadA-like membrane anchor domain LSO58_12330 PF05658 Head domain of trimeric autotransporter adhesin LSO58_12330 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO58_12330 PF13018 Extended Signal Peptide of Type V secretion system LSO58_12335 PF01812 5-formyltetrahydrofolate cyclo-ligase family LSO58_12340 PF00004 ATPase family associated with various cellular activities (AAA) LSO58_12340 PF05362 Lon protease (S16) C-terminal proteolytic domain LSO58_12340 PF02190 ATP-dependent protease La (LON) substrate-binding domain LSO58_12345 PF02590 Predicted SPOUT methyltransferase LSO58_12350 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LSO58_12360 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LSO58_12360 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LSO58_12365 PF04060 Putative Fe-S cluster LSO58_12370 PF10576 Iron-sulfur binding domain of endonuclease III LSO58_12370 PF00633 Helix-hairpin-helix motif LSO58_12370 PF00730 HhH-GPD superfamily base excision DNA repair protein LSO58_12380 PF05191 Adenylate kinase, active site lid LSO58_12395 PF03717 Penicillin-binding Protein dimerisation domain LSO58_12395 PF00905 Penicillin binding protein transpeptidase domain LSO58_12425 PF02492 CobW/HypB/UreG, nucleotide-binding domain LSO58_12430 PF01730 UreF LSO58_12435 PF05194 UreE urease accessory protein, C-terminal domain LSO58_12435 PF02814 UreE urease accessory protein, N-terminal domain LSO58_12440 PF01979 Amidohydrolase family LSO58_12440 PF00449 Urease alpha-subunit, N-terminal domain LSO58_12445 PF00699 Urease beta subunit LSO58_12450 PF00547 Urease, gamma subunit LSO58_12455 PF01774 UreD urease accessory protein LSO58_12470 PF17185 NlpE C-terminal OB domain LSO58_12470 PF04170 NlpE N-terminal domain LSO58_12475 PF03060 Nitronate monooxygenase LSO58_12480 PF00463 Isocitrate lyase family LSO58_12485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_12485 PF03466 LysR substrate binding domain LSO58_12490 PF00571 CBS domain LSO58_12490 PF03471 Transporter associated domain LSO58_12490 PF01595 Cyclin M transmembrane N-terminal domain LSO58_12500 PF00005 ABC transporter LSO58_12515 PF00893 Small Multidrug Resistance protein LSO58_12520 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO58_12525 PF01425 Amidase LSO58_12530 PF08753 NikR C terminal nickel binding domain LSO58_12530 PF01402 Ribbon-helix-helix protein, copG family LSO58_12540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO58_12540 PF00289 Biotin carboxylase, N-terminal domain LSO58_12540 PF02785 Biotin carboxylase C-terminal domain LSO58_12575 PF03600 Citrate transporter LSO58_12580 PF00009 Elongation factor Tu GTP binding domain LSO58_12585 PF01507 Phosphoadenosine phosphosulfate reductase family LSO58_12590 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO58_12590 PF07685 CobB/CobQ-like glutamine amidotransferase domain LSO58_12600 PF00593 TonB dependent receptor LSO58_12600 PF07715 TonB-dependent Receptor Plug Domain LSO58_12615 PF00037 4Fe-4S binding domain LSO58_12620 PF01467 Cytidylyltransferase-like LSO58_12625 PF01668 SmpB protein LSO58_12630 PF03358 NADPH-dependent FMN reductase LSO58_12635 PF02578 Multi-copper polyphenol oxidoreductase laccase LSO58_12640 PF00849 RNA pseudouridylate synthase LSO58_12640 PF01479 S4 domain LSO58_12645 PF13525 Outer membrane lipoprotein LSO58_12650 PF10410 DnaB-helicase binding domain of primase LSO58_12650 PF08278 DNA primase DnaG DnaB-binding LSO58_12650 PF08275 DNA primase catalytic core, N-terminal domain LSO58_12650 PF01807 CHC2 zinc finger LSO58_12655 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LSO58_12655 PF01488 Shikimate / quinate 5-dehydrogenase LSO58_12655 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LSO58_12665 PF03550 Outer membrane lipoprotein LolB LSO58_12670 PF08544 GHMP kinases C terminal LSO58_12670 PF00288 GHMP kinases N terminal domain LSO58_12695 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LSO58_12695 PF14572 Phosphoribosyl synthetase-associated domain LSO58_12700 PF01386 Ribosomal L25p family LSO58_12705 PF01195 Peptidyl-tRNA hydrolase LSO58_12710 PF02261 Aspartate decarboxylase LSO58_12715 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LSO58_12725 PF00581 Rhodanese-like domain LSO58_12725 PF17773 UPF0176 acylphosphatase like domain LSO58_12740 PF09335 SNARE associated Golgi protein LSO58_12745 PF05724 Thiopurine S-methyltransferase (TPMT) LSO58_12760 PF04539 Sigma-70 region 3 LSO58_12760 PF04545 Sigma-70, region 4 LSO58_12760 PF00140 Sigma-70 factor, region 1.2 LSO58_12760 PF04542 Sigma-70 region 2 LSO58_12760 PF04546 Sigma-70, non-essential region LSO58_12760 PF03979 Sigma-70 factor, region 1.1 LSO58_12765 PF04359 Protein of unknown function (DUF493) LSO58_12770 PF03099 Biotin/lipoate A/B protein ligase family LSO58_12780 PF00465 Iron-containing alcohol dehydrogenase LSO58_12785 PF13520 Amino acid permease LSO58_12790 PF04228 Putative neutral zinc metallopeptidase LSO58_12795 PF05661 Protein of unknown function (DUF808) LSO58_12800 PF00579 tRNA synthetases class I (W and Y) LSO58_12805 PF07290 Protein of unknown function (DUF1449) LSO58_12810 PF01145 SPFH domain / Band 7 family LSO58_12810 PF15975 Flotillin LSO58_12825 PF00535 Glycosyl transferase family 2 LSO58_12830 PF14883 Hypothetical glycosyl hydrolase family 13 LSO58_12830 PF01522 Polysaccharide deacetylase LSO58_12840 PF02629 CoA binding domain LSO58_12840 PF00549 CoA-ligase LSO58_12845 PF08442 ATP-grasp domain LSO58_12845 PF00549 CoA-ligase LSO58_12850 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_12850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO58_12855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LSO58_12855 PF00364 Biotin-requiring enzyme LSO58_12855 PF02817 e3 binding domain LSO58_12860 PF16078 2-oxoglutarate dehydrogenase N-terminus LSO58_12860 PF00676 Dehydrogenase E1 component LSO58_12860 PF16870 2-oxoglutarate dehydrogenase C-terminal LSO58_12860 PF02779 Transketolase, pyrimidine binding domain LSO58_12865 PF13085 2Fe-2S iron-sulfur cluster binding domain LSO58_12870 PF02910 Fumarate reductase flavoprotein C-term LSO58_12870 PF00890 FAD binding domain LSO58_12875 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LSO58_12880 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LSO58_12885 PF00285 Citrate synthase, C-terminal domain LSO58_12890 PF03061 Thioesterase superfamily LSO58_12900 PF02028 BCCT, betaine/carnitine/choline family transporter LSO58_12905 PF13977 BetI-type transcriptional repressor, C-terminal LSO58_12905 PF00440 Bacterial regulatory proteins, tetR family LSO58_12910 PF00171 Aldehyde dehydrogenase family LSO58_12915 PF00732 GMC oxidoreductase LSO58_12915 PF05199 GMC oxidoreductase LSO58_12930 PF07715 TonB-dependent Receptor Plug Domain LSO58_12930 PF00593 TonB dependent receptor LSO58_12940 PF01032 FecCD transport family LSO58_12945 PF00005 ABC transporter LSO58_12960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO58_12960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO58_12960 PF00205 Thiamine pyrophosphate enzyme, central domain LSO58_12965 PF00171 Aldehyde dehydrogenase family LSO58_12970 PF03447 Homoserine dehydrogenase, NAD binding domain LSO58_12970 PF01958 Domain of unknown function DUF108 LSO58_12980 PF12697 Alpha/beta hydrolase family LSO58_12990 PF07690 Major Facilitator Superfamily LSO58_12995 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_12995 PF14759 Reductase C-terminal LSO58_13010 PF00355 Rieske [2Fe-2S] domain LSO58_13020 PF00355 Rieske [2Fe-2S] domain LSO58_13025 PF09339 IclR helix-turn-helix domain LSO58_13025 PF01614 Bacterial transcriptional regulator LSO58_13030 PF03573 outer membrane porin, OprD family LSO58_13040 PF07690 Major Facilitator Superfamily LSO58_13045 PF00355 Rieske [2Fe-2S] domain LSO58_13050 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO58_13050 PF00175 Oxidoreductase NAD-binding domain LSO58_13075 PF01207 Dihydrouridine synthase (Dus) LSO58_13085 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LSO58_13085 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LSO58_13095 PF00899 ThiF family LSO58_13100 PF00330 Aconitase family (aconitate hydratase) LSO58_13100 PF00694 Aconitase C-terminal domain LSO58_13105 PF01026 TatD related DNase LSO58_13120 PF03144 Elongation factor Tu domain 2 LSO58_13120 PF00009 Elongation factor Tu GTP binding domain LSO58_13120 PF16658 Class II release factor RF3, C-terminal domain LSO58_13130 PF03707 Bacterial signalling protein N terminal repeat LSO58_13130 PF00990 Diguanylate cyclase, GGDEF domain LSO58_13130 PF00563 EAL domain LSO58_13135 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LSO58_13135 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LSO58_13140 PF10369 Small subunit of acetolactate synthase LSO58_13145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO58_13145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO58_13145 PF00205 Thiamine pyrophosphate enzyme, central domain LSO58_13155 PF09334 tRNA synthetases class I (M) LSO58_13155 PF13603 Leucyl-tRNA synthetase, Domain 2 LSO58_13155 PF00133 tRNA synthetases class I (I, L, M and V) LSO58_13155 PF08264 Anticodon-binding domain of tRNA LSO58_13170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_13175 PF00005 ABC transporter LSO58_13175 PF02687 FtsX-like permease family LSO58_13175 PF12704 MacB-like periplasmic core domain LSO58_13180 PF02321 Outer membrane efflux protein LSO58_13185 PF07715 TonB-dependent Receptor Plug Domain LSO58_13185 PF00593 TonB dependent receptor LSO58_13190 PF07690 Major Facilitator Superfamily LSO58_13205 PF06276 Ferric iron reductase FhuF-like transporter LSO58_13205 PF04183 IucA / IucC family LSO58_13210 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LSO58_13215 PF04183 IucA / IucC family LSO58_13215 PF06276 Ferric iron reductase FhuF-like transporter LSO58_13220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_13220 PF03466 LysR substrate binding domain LSO58_13225 PF03737 Aldolase/RraA LSO58_13230 PF00155 Aminotransferase class I and II LSO58_13235 PF00375 Sodium:dicarboxylate symporter family LSO58_13240 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LSO58_13240 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LSO58_13250 PF07690 Major Facilitator Superfamily LSO58_13255 PF00982 Glycosyltransferase family 20 LSO58_13295 PF00392 Bacterial regulatory proteins, gntR family LSO58_13295 PF00155 Aminotransferase class I and II LSO58_13300 PF07690 Major Facilitator Superfamily LSO58_13305 PF00529 HlyD membrane-fusion protein of T1SS LSO58_13305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_13310 PF03061 Thioesterase superfamily LSO58_13315 PF00490 Delta-aminolevulinic acid dehydratase LSO58_13320 PF01266 FAD dependent oxidoreductase LSO58_13335 PF12320 Type 5 capsule protein repressor C-terminal domain LSO58_13335 PF00149 Calcineurin-like phosphoesterase LSO58_13350 PF13419 Haloacid dehalogenase-like hydrolase LSO58_13355 PF02673 Bacitracin resistance protein BacA LSO58_13360 PF01168 Alanine racemase, N-terminal domain LSO58_13365 PF00437 Type II/IV secretion system protein LSO58_13370 PF00437 Type II/IV secretion system protein LSO58_13375 PF01475 Ferric uptake regulator family LSO58_13380 PF04355 SmpA / OmlA family LSO58_13385 PF03658 RnfH family Ubiquitin LSO58_13395 PF01814 Hemerythrin HHE cation binding domain LSO58_13400 PF13230 Glutamine amidotransferases class-II LSO58_13410 PF00696 Amino acid kinase family LSO58_13415 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO58_13415 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO58_13415 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO58_13415 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO58_13420 PF00692 dUTPase LSO58_13425 PF13361 UvrD-like helicase C-terminal domain LSO58_13425 PF00580 UvrD/REP helicase N-terminal domain LSO58_13430 PF00691 OmpA family LSO58_13430 PF13488 Glycine zipper LSO58_13435 PF01553 Acyltransferase LSO58_13445 PF03775 Septum formation inhibitor MinC, C-terminal domain LSO58_13450 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO58_13455 PF03776 Septum formation topological specificity factor MinE LSO58_13465 PF01810 LysE type translocator LSO58_13470 PF03976 Polyphosphate kinase 2 (PPK2) LSO58_13475 PF09397 Ftsk gamma domain LSO58_13475 PF17854 FtsK alpha domain LSO58_13475 PF01580 FtsK/SpoIIIE family LSO58_13475 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LSO58_13480 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_13485 PF13847 Methyltransferase domain LSO58_13485 PF10119 Predicted methyltransferase regulatory domain LSO58_13490 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LSO58_13495 PF04376 Arginine-tRNA-protein transferase, N terminus LSO58_13495 PF04377 Arginine-tRNA-protein transferase, C terminus LSO58_13500 PF00583 Acetyltransferase (GNAT) family LSO58_13510 PF03143 Elongation factor Tu C-terminal domain LSO58_13510 PF03144 Elongation factor Tu domain 2 LSO58_13510 PF00009 Elongation factor Tu GTP binding domain LSO58_13515 PF03144 Elongation factor Tu domain 2 LSO58_13515 PF03764 Elongation factor G, domain IV LSO58_13515 PF00009 Elongation factor Tu GTP binding domain LSO58_13515 PF00679 Elongation factor G C-terminus LSO58_13515 PF14492 Elongation Factor G, domain II LSO58_13520 PF00177 Ribosomal protein S7p/S5e LSO58_13525 PF00164 Ribosomal protein S12/S23 LSO58_13535 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO58_13535 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO58_13540 PF03653 Uncharacterised protein family (UPF0093) LSO58_13545 PF01757 Acyltransferase family LSO58_13555 PF13419 Haloacid dehalogenase-like hydrolase LSO58_13560 PF08543 Phosphomethylpyrimidine kinase LSO58_13560 PF02581 Thiamine monophosphate synthase LSO58_13560 PF03070 TENA/THI-4/PQQC family LSO58_13565 PF01638 HxlR-like helix-turn-helix LSO58_13570 PF02525 Flavodoxin-like fold LSO58_13575 PF04972 BON domain LSO58_13575 PF01476 LysM domain LSO58_13580 PF00550 Phosphopantetheine attachment site LSO58_13590 PF00698 Acyl transferase domain LSO58_13595 PF01783 Ribosomal L32p protein family LSO58_13600 PF02620 Large ribosomal RNA subunit accumulation protein YceD LSO58_13605 PF04315 Elongation factor P hydroxylase LSO58_13610 PF01300 Telomere recombination LSO58_13620 PF02616 Segregation and condensation protein ScpA LSO58_13625 PF04079 Segregation and condensation complex subunit ScpB LSO58_13630 PF00849 RNA pseudouridylate synthase LSO58_13630 PF01479 S4 domain LSO58_13650 PF00155 Aminotransferase class I and II LSO58_13655 PF00202 Aminotransferase class-III LSO58_13655 PF06968 Biotin and Thiamin Synthesis associated domain LSO58_13655 PF04055 Radical SAM superfamily LSO58_13670 PF00578 AhpC/TSA family LSO58_13675 PF00210 Ferritin-like domain LSO58_13685 PF12826 Helix-hairpin-helix motif LSO58_13685 PF01653 NAD-dependent DNA ligase adenylation domain LSO58_13685 PF03120 NAD-dependent DNA ligase OB-fold domain LSO58_13685 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LSO58_13685 PF00533 BRCA1 C Terminus (BRCT) domain LSO58_13695 PF06470 SMC proteins Flexible Hinge Domain LSO58_13695 PF02463 RecF/RecN/SMC N terminal domain LSO58_13705 PF01925 Sulfite exporter TauE/SafE LSO58_13710 PF02237 Biotin protein ligase C terminal domain LSO58_13710 PF03099 Biotin/lipoate A/B protein ligase family LSO58_13710 PF08279 HTH domain LSO58_13715 PF03309 Type III pantothenate kinase LSO58_13720 PF06821 Serine hydrolase LSO58_13725 PF02978 Signal peptide binding domain LSO58_13725 PF00448 SRP54-type protein, GTPase domain LSO58_13725 PF02881 SRP54-type protein, helical bundle domain LSO58_13735 PF01207 Dihydrouridine synthase (Dus) LSO58_13750 PF07411 Domain of unknown function (DUF1508) LSO58_13755 PF00293 NUDIX domain LSO58_13760 PF03831 PhnA domain LSO58_13760 PF08274 PhnA Zinc-Ribbon LSO58_13770 PF00849 RNA pseudouridylate synthase LSO58_13775 PF01734 Patatin-like phospholipase LSO58_13780 PF01235 Sodium:alanine symporter family LSO58_13785 PF03616 Sodium/glutamate symporter LSO58_13795 PF00881 Nitroreductase family LSO58_13800 PF07690 Major Facilitator Superfamily LSO58_13805 PF12805 FUSC-like inner membrane protein yccS LSO58_13815 PF00667 FAD binding domain LSO58_13815 PF00258 Flavodoxin LSO58_13815 PF00175 Oxidoreductase NAD-binding domain LSO58_13860 PF03734 L,D-transpeptidase catalytic domain LSO58_13860 PF17969 L,D-transpeptidase C-terminal domain LSO58_13865 PF04304 Protein of unknown function (DUF454) LSO58_13875 PF08085 Entericidin EcnA/B family LSO58_13880 PF07687 Peptidase dimerisation domain LSO58_13880 PF01546 Peptidase family M20/M25/M40 LSO58_13885 PF13505 Outer membrane protein beta-barrel domain LSO58_13885 PF00691 OmpA family LSO58_13895 PF00108 Thiolase, N-terminal domain LSO58_13895 PF02803 Thiolase, C-terminal domain LSO58_13910 PF00581 Rhodanese-like domain LSO58_13915 PF04461 Protein of unknown function (DUF520) LSO58_13925 PF13185 GAF domain LSO58_13930 PF03061 Thioesterase superfamily LSO58_13935 PF00085 Thioredoxin LSO58_13945 PF04273 Putative phosphatase (DUF442) LSO58_13945 PF00753 Metallo-beta-lactamase superfamily LSO58_13955 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_13955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO58_13955 PF00403 Heavy-metal-associated domain LSO58_13990 PF17152 Periplasmic sensor domain LSO58_13990 PF00990 Diguanylate cyclase, GGDEF domain LSO58_13995 PF13488 Glycine zipper LSO58_13995 PF00691 OmpA family LSO58_14020 PF02445 Quinolinate synthetase A protein LSO58_14025 PF01960 ArgJ family LSO58_14035 PF07517 SecA DEAD-like domain LSO58_14035 PF02810 SEC-C motif LSO58_14035 PF01043 SecA preprotein cross-linking domain LSO58_14035 PF07516 SecA Wing and Scaffold domain LSO58_14040 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO58_14040 PF00578 AhpC/TSA family LSO58_14045 PF00753 Metallo-beta-lactamase superfamily LSO58_14060 PF02875 Mur ligase family, glutamate ligase domain LSO58_14060 PF08245 Mur ligase middle domain LSO58_14065 PF01039 Carboxyl transferase domain LSO58_14070 PF00290 Tryptophan synthase alpha chain LSO58_14095 PF00291 Pyridoxal-phosphate dependent enzyme LSO58_14100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LSO58_14105 PF00593 TonB dependent receptor LSO58_14105 PF07715 TonB-dependent Receptor Plug Domain LSO58_14110 PF01923 Cobalamin adenosyltransferase LSO58_14130 PF02824 TGS domain LSO58_14130 PF13291 ACT domain LSO58_14130 PF04607 Region found in RelA / SpoT proteins LSO58_14135 PF05958 tRNA (Uracil-5-)-methyltransferase LSO58_14145 PF00291 Pyridoxal-phosphate dependent enzyme LSO58_14150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LSO58_14150 PF00512 His Kinase A (phospho-acceptor) domain LSO58_14150 PF01627 Hpt domain LSO58_14150 PF00672 HAMP domain LSO58_14150 PF00072 Response regulator receiver domain LSO58_14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_14155 PF00378 Enoyl-CoA hydratase/isomerase LSO58_14160 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO58_14160 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO58_14165 PF01261 Xylose isomerase-like TIM barrel LSO58_14185 PF07724 AAA domain (Cdc48 subfamily) LSO58_14185 PF10431 C-terminal, D2-small domain, of ClpB protein LSO58_14185 PF06689 ClpX C4-type zinc finger LSO58_14190 PF00574 Clp protease LSO58_14195 PF05698 Bacterial trigger factor protein (TF) C-terminus LSO58_14195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO58_14195 PF05697 Bacterial trigger factor protein (TF) LSO58_14200 PF00593 TonB dependent receptor LSO58_14200 PF07715 TonB-dependent Receptor Plug Domain LSO58_14205 PF18331 PKHD-type hydroxylase C-terminal domain LSO58_14205 PF13640 2OG-Fe(II) oxygenase superfamily LSO58_14210 PF00682 HMGL-like LSO58_14210 PF08502 LeuA allosteric (dimerisation) domain LSO58_14215 PF00561 alpha/beta hydrolase fold LSO58_14220 PF07021 Methionine biosynthesis protein MetW LSO58_14220 PF00561 alpha/beta hydrolase fold LSO58_14230 PF01725 Ham1 family LSO58_14240 PF02416 mttA/Hcf106 family LSO58_14245 PF02416 mttA/Hcf106 family LSO58_14250 PF00902 Sec-independent protein translocase protein (TatC) LSO58_14265 PF01790 Prolipoprotein diacylglyceryl transferase LSO58_14280 PF00303 Thymidylate synthase LSO58_14285 PF00186 Dihydrofolate reductase LSO58_14300 PF01625 Peptide methionine sulfoxide reductase LSO58_14310 PF01618 MotA/TolQ/ExbB proton channel family LSO58_14315 PF03544 Gram-negative bacterial TonB protein C-terminal LSO58_14320 PF01842 ACT domain LSO58_14320 PF00551 Formyl transferase LSO58_14325 PF17932 Tetracyclin repressor-like, C-terminal domain LSO58_14325 PF00440 Bacterial regulatory proteins, tetR family LSO58_14330 PF00171 Aldehyde dehydrogenase family LSO58_14335 PF00830 Ribosomal L28 family LSO58_14340 PF00471 Ribosomal protein L33 LSO58_14345 PF02254 TrkA-N domain LSO58_14345 PF00999 Sodium/hydrogen exchanger family LSO58_14365 PF00580 UvrD/REP helicase N-terminal domain LSO58_14365 PF13361 UvrD-like helicase C-terminal domain LSO58_14375 PF00360 Phytochrome region LSO58_14375 PF00990 Diguanylate cyclase, GGDEF domain LSO58_14375 PF01590 GAF domain LSO58_14375 PF00563 EAL domain LSO58_14390 PF08272 Topoisomerase I zinc-ribbon-like LSO58_14390 PF01131 DNA topoisomerase LSO58_14390 PF01751 Toprim domain LSO58_14390 PF01396 Topoisomerase DNA binding C4 zinc finger LSO58_14405 PF04102 SlyX LSO58_14410 PF00005 ABC transporter LSO58_14410 PF16326 ABC transporter C-terminal domain LSO58_14410 PF12848 ABC transporter LSO58_14420 PF03279 Bacterial lipid A biosynthesis acyltransferase LSO58_14425 PF13439 Glycosyltransferase Family 4 LSO58_14425 PF00534 Glycosyl transferases group 1 LSO58_14430 PF00375 Sodium:dicarboxylate symporter family LSO58_14445 PF02774 Semialdehyde dehydrogenase, dimerisation domain LSO58_14445 PF01118 Semialdehyde dehydrogenase, NAD binding domain LSO58_14465 PF01416 tRNA pseudouridine synthase LSO58_14480 PF01176 Translation initiation factor 1A / IF-1 LSO58_14490 PF00180 Isocitrate/isopropylmalate dehydrogenase LSO58_14500 PF00694 Aconitase C-terminal domain LSO58_14505 PF00330 Aconitase family (aconitate hydratase) LSO58_14520 PF03466 LysR substrate binding domain LSO58_14520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_14535 PF00293 NUDIX domain LSO58_14540 PF05524 PEP-utilising enzyme, N-terminal LSO58_14540 PF02896 PEP-utilising enzyme, TIM barrel domain LSO58_14540 PF01590 GAF domain LSO58_14540 PF00391 PEP-utilising enzyme, mobile domain LSO58_14545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO58_14545 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_14545 PF18158 Adaptive response protein AidB N-terminal domain LSO58_14555 PF00199 Catalase LSO58_14555 PF06628 Catalase-related immune-responsive LSO58_14560 PF13360 PQQ-like domain LSO58_14560 PF01011 PQQ enzyme repeat LSO58_14565 PF12706 Beta-lactamase superfamily domain LSO58_14570 PF16916 Dimerisation domain of Zinc Transporter LSO58_14570 PF01545 Cation efflux family LSO58_14575 PF03466 LysR substrate binding domain LSO58_14575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_14590 PF01479 S4 domain LSO58_14590 PF00849 RNA pseudouridylate synthase LSO58_14595 PF00575 S1 RNA binding domain LSO58_14595 PF12111 Polyribonucleotide phosphorylase C terminal LSO58_14595 PF10150 Ribonuclease E/G family LSO58_14600 PF00501 AMP-binding enzyme LSO58_14600 PF13193 AMP-binding enzyme C-terminal domain LSO58_14615 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO58_14615 PF00578 AhpC/TSA family LSO58_14620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_14620 PF03466 LysR substrate binding domain LSO58_14625 PF00106 short chain dehydrogenase LSO58_14635 PF08281 Sigma-70, region 4 LSO58_14635 PF04542 Sigma-70 region 2 LSO58_14640 PF00593 TonB dependent receptor LSO58_14640 PF07715 TonB-dependent Receptor Plug Domain LSO58_14645 PF06969 HemN C-terminal domain LSO58_14645 PF04055 Radical SAM superfamily LSO58_14655 PF01554 MatE LSO58_14660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_14660 PF02770 Acyl-CoA dehydrogenase, middle domain LSO58_14660 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO58_14665 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO58_14665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO58_14670 PF03109 ABC1 family LSO58_14675 PF01197 Ribosomal protein L31 LSO58_14690 PF01613 Flavin reductase like domain LSO58_14695 PF08267 Cobalamin-independent synthase, N-terminal domain LSO58_14695 PF01717 Cobalamin-independent synthase, Catalytic domain LSO58_14710 PF13247 4Fe-4S dicluster domain LSO58_14710 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LSO58_14710 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_14720 PF03884 DNA gyrase inhibitor YacG LSO58_14730 PF00753 Metallo-beta-lactamase superfamily LSO58_14735 PF00762 Ferrochelatase LSO58_14745 PF01177 Asp/Glu/Hydantoin racemase LSO58_14765 PF01810 LysE type translocator LSO58_14770 PF01206 Sulfurtransferase TusA LSO58_14775 PF03471 Transporter associated domain LSO58_14775 PF00571 CBS domain LSO58_14780 PF00795 Carbon-nitrogen hydrolase LSO58_14785 PF01588 Putative tRNA binding domain LSO58_14795 PF08334 Type II secretion system (T2SS), protein G LSO58_14795 PF07963 Prokaryotic N-terminal methylation motif LSO58_14800 PF00482 Type II secretion system (T2SS), protein F LSO58_14805 PF00270 DEAD/DEAH box helicase LSO58_14805 PF00271 Helicase conserved C-terminal domain LSO58_14805 PF17764 3′ DNA-binding domain (3′BD) LSO58_14805 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LSO58_14805 PF18074 Primosomal protein N C-terminal domain LSO58_14810 PF00999 Sodium/hydrogen exchanger family LSO58_14810 PF02254 TrkA-N domain LSO58_14815 PF01430 Hsp33 protein LSO58_14820 PF00226 DnaJ domain LSO58_14820 PF01556 DnaJ C terminal domain LSO58_14835 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LSO58_14840 PF01544 CorA-like Mg2+ transporter protein LSO58_14845 PF04325 Protein of unknown function (DUF465) LSO58_14850 PF00013 KH domain LSO58_14850 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LSO58_14850 PF01138 3' exoribonuclease family, domain 1 LSO58_14850 PF03725 3' exoribonuclease family, domain 2 LSO58_14850 PF00575 S1 RNA binding domain LSO58_14855 PF00312 Ribosomal protein S15 LSO58_14860 PF00144 Beta-lactamase LSO58_14865 PF13538 UvrD-like helicase C-terminal domain LSO58_14870 PF12705 PD-(D/E)XK nuclease superfamily LSO58_14870 PF00580 UvrD/REP helicase N-terminal domain LSO58_14870 PF13361 UvrD-like helicase C-terminal domain LSO58_14875 PF17946 RecC C-terminal domain LSO58_14885 PF07690 Major Facilitator Superfamily LSO58_14890 PF03976 Polyphosphate kinase 2 (PPK2) LSO58_14900 PF01209 ubiE/COQ5 methyltransferase family LSO58_14910 PF03109 ABC1 family LSO58_14915 PF01494 FAD binding domain LSO58_14920 PF01502 Phosphoribosyl-AMP cyclohydrolase LSO58_14935 PF00361 Proton-conducting membrane transporter LSO58_14935 PF13244 Domain of unknown function (DUF4040) LSO58_14935 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LSO58_14935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LSO58_14940 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LSO58_14945 PF00361 Proton-conducting membrane transporter LSO58_14950 PF01899 Na+/H+ ion antiporter subunit LSO58_14955 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LSO58_14960 PF03334 Na+/H+ antiporter subunit LSO58_14965 PF02033 Ribosome-binding factor A LSO58_14970 PF08364 Bacterial translation initiation factor IF-2 associated region LSO58_14970 PF04760 Translation initiation factor IF-2, N-terminal region LSO58_14970 PF00009 Elongation factor Tu GTP binding domain LSO58_14970 PF11987 Translation-initiation factor 2 LSO58_14975 PF13184 NusA-like KH domain LSO58_14975 PF08529 NusA N-terminal domain LSO58_14975 PF00575 S1 RNA binding domain LSO58_14980 PF02576 RimP N-terminal domain LSO58_14980 PF17384 RimP C-terminal SH3 domain LSO58_15000 PF03840 Preprotein translocase SecG subunit LSO58_15005 PF00121 Triosephosphate isomerase LSO58_15010 PF00437 Type II/IV secretion system protein LSO58_15010 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LSO58_15015 PF00482 Type II secretion system (T2SS), protein F LSO58_15025 PF06750 Bacterial Peptidase A24 N-terminal domain LSO58_15025 PF01478 Type IV leader peptidase family LSO58_15030 PF01121 Dephospho-CoA kinase LSO58_15040 PF08032 RNA 2'-O ribose methyltransferase substrate binding LSO58_15040 PF00588 SpoU rRNA Methylase family LSO58_15045 PF06865 Pyrimidine/purine nucleoside phosphorylase LSO58_15050 PF02463 RecF/RecN/SMC N terminal domain LSO58_15055 PF02622 Uncharacterized ACR, COG1678 LSO58_15060 PF03652 Holliday junction resolvase LSO58_15065 PF13533 Biotin-lipoyl like LSO58_15075 PF04632 Fusaric acid resistance protein family LSO58_15085 PF00664 ABC transporter transmembrane region LSO58_15085 PF00005 ABC transporter LSO58_15095 PF02805 Metal binding domain of Ada LSO58_15095 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LSO58_15095 PF12833 Helix-turn-helix domain LSO58_15095 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LSO58_15100 PF01066 CDP-alcohol phosphatidyltransferase LSO58_15110 PF08459 UvrC Helix-hairpin-helix N-terminal LSO58_15110 PF02151 UvrB/uvrC motif LSO58_15110 PF01541 GIY-YIG catalytic domain LSO58_15125 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO58_15125 PF00378 Enoyl-CoA hydratase/isomerase LSO58_15125 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO58_15130 PF02803 Thiolase, C-terminal domain LSO58_15130 PF00108 Thiolase, N-terminal domain LSO58_15150 PF15864 Protein glycosylation ligase LSO58_15150 PF04932 O-Antigen ligase LSO58_15150 PF11846 Virulence factor membrane-bound polymerase, C-terminal LSO58_15160 PF15864 Protein glycosylation ligase LSO58_15160 PF04932 O-Antigen ligase LSO58_15160 PF11846 Virulence factor membrane-bound polymerase, C-terminal LSO58_15165 PF07963 Prokaryotic N-terminal methylation motif LSO58_15165 PF00114 Pilin (bacterial filament) LSO58_15175 PF04536 TPM domain LSO58_15180 PF04011 LemA family LSO58_15200 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LSO58_15200 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO58_15205 PF01493 GXGXG motif LSO58_15205 PF04898 Glutamate synthase central domain LSO58_15205 PF01645 Conserved region in glutamate synthase LSO58_15205 PF00310 Glutamine amidotransferases class-II LSO58_15215 PF01761 3-dehydroquinate synthase LSO58_15220 PF01202 Shikimate kinase LSO58_15225 PF11741 AMIN domain LSO58_15225 PF00263 Bacterial type II and III secretion system protein LSO58_15225 PF03958 Bacterial type II/III secretion system short domain LSO58_15225 PF07660 Secretin and TonB N terminus short domain LSO58_15235 PF04350 Pilus assembly protein, PilO LSO58_15240 PF05137 Fimbrial assembly protein (PilN) LSO58_15245 PF11104 Type IV pilus assembly protein PilM; LSO58_15250 PF17092 Penicillin-binding protein OB-like domain LSO58_15250 PF00912 Transglycosylase LSO58_15250 PF00905 Penicillin binding protein transpeptidase domain LSO58_15255 PF13847 Methyltransferase domain LSO58_15260 PF00953 Glycosyl transferase family 4 LSO58_15265 PF02875 Mur ligase family, glutamate ligase domain LSO58_15265 PF01225 Mur ligase family, catalytic domain LSO58_15265 PF08245 Mur ligase middle domain LSO58_15270 PF02875 Mur ligase family, glutamate ligase domain LSO58_15270 PF01225 Mur ligase family, catalytic domain LSO58_15270 PF08245 Mur ligase middle domain LSO58_15275 PF00905 Penicillin binding protein transpeptidase domain LSO58_15275 PF03717 Penicillin-binding Protein dimerisation domain LSO58_15285 PF01795 MraW methylase family LSO58_15300 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO58_15320 PF01545 Cation efflux family LSO58_15325 PF00873 AcrB/AcrD/AcrF family LSO58_15330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_15330 PF00529 HlyD membrane-fusion protein of T1SS LSO58_15350 PF00005 ABC transporter LSO58_15350 PF12848 ABC transporter LSO58_15355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO58_15355 PF00205 Thiamine pyrophosphate enzyme, central domain LSO58_15355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO58_15360 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO58_15365 PF00106 short chain dehydrogenase LSO58_15380 PF00575 S1 RNA binding domain LSO58_15380 PF17674 HHH domain LSO58_15380 PF16921 Tex protein YqgF-like domain LSO58_15380 PF09371 Tex-like protein N-terminal domain LSO58_15385 PF00486 Transcriptional regulatory protein, C terminal LSO58_15385 PF00072 Response regulator receiver domain LSO58_15390 PF00672 HAMP domain LSO58_15390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_15390 PF00512 His Kinase A (phospho-acceptor) domain LSO58_15395 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LSO58_15395 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LSO58_15400 PF00583 Acetyltransferase (GNAT) family LSO58_15430 PF00475 Imidazoleglycerol-phosphate dehydratase LSO58_15435 PF00117 Glutamine amidotransferase class-I LSO58_15445 PF00977 Histidine biosynthesis protein LSO58_15465 PF00664 ABC transporter transmembrane region LSO58_15465 PF00005 ABC transporter LSO58_15470 PF01266 FAD dependent oxidoreductase LSO58_15475 PF00324 Amino acid permease LSO58_15495 PF01636 Phosphotransferase enzyme family LSO58_15500 PF00977 Histidine biosynthesis protein LSO58_15515 PF00230 Major intrinsic protein LSO58_15535 PF02705 K+ potassium transporter LSO58_15545 PF13356 Arm DNA-binding domain LSO58_15545 PF00589 Phage integrase family LSO58_15555 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LSO58_15555 PF18766 SWI2/SNF2 ATPase LSO58_15555 PF12008 Type I restriction and modification enzyme - subunit R C terminal LSO58_15570 PF12161 HsdM N-terminal domain LSO58_15570 PF02384 N-6 DNA Methylase LSO58_15650 PF02661 Fic/DOC family LSO58_15650 PF13784 Fic/DOC family N-terminal LSO58_15655 PF13737 Transposase DDE domain LSO58_15680 PF13007 Transposase C of IS166 homeodomain LSO58_15680 PF13005 zinc-finger binding domain of transposase IS66 LSO58_15680 PF13817 IS66 C-terminal element LSO58_15680 PF03050 Transposase IS66 family LSO58_15705 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LSO58_15705 PF13296 Putative type VI secretion system Rhs element Vgr LSO58_15705 PF04717 Type VI secretion system, phage-baseplate injector LSO58_15715 PF01144 Coenzyme A transferase LSO58_15720 PF01144 Coenzyme A transferase LSO58_15725 PF01494 FAD binding domain LSO58_15730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO58_15735 PF01557 Fumarylacetoacetate (FAA) hydrolase family LSO58_15745 PF00436 Single-strand binding protein family LSO58_15750 PF07690 Major Facilitator Superfamily LSO58_15760 PF03070 TENA/THI-4/PQQC family LSO58_15770 PF06942 GlpM protein LSO58_15785 PF17755 UvrA DNA-binding domain LSO58_15785 PF17760 UvrA interaction domain LSO58_15795 PF17158 Membrane-associated sensor, integral membrane domain LSO58_15795 PF00990 Diguanylate cyclase, GGDEF domain LSO58_15800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO58_15815 PF01593 Flavin containing amine oxidoreductase LSO58_15820 PF05726 Pirin C-terminal cupin domain LSO58_15820 PF02678 Pirin LSO58_15825 PF00857 Isochorismatase family LSO58_15835 PF13533 Biotin-lipoyl like LSO58_15855 PF00005 ABC transporter LSO58_15855 PF03412 Peptidase C39 family LSO58_15855 PF00664 ABC transporter transmembrane region LSO58_15880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_15880 PF03459 TOBE domain LSO58_15885 PF04055 Radical SAM superfamily LSO58_15885 PF06969 HemN C-terminal domain LSO58_15890 PF00324 Amino acid permease LSO58_15895 PF01042 Endoribonuclease L-PSP LSO58_15900 PF00842 Alanine racemase, C-terminal domain LSO58_15900 PF01168 Alanine racemase, N-terminal domain LSO58_15905 PF01266 FAD dependent oxidoreductase LSO58_15910 PF01037 Lrp/AsnC ligand binding domain LSO58_15915 PF00155 Aminotransferase class I and II LSO58_15925 PF01565 FAD binding domain LSO58_15925 PF09330 D-lactate dehydrogenase, membrane binding LSO58_15930 PF01070 FMN-dependent dehydrogenase LSO58_15935 PF07729 FCD domain LSO58_15935 PF00392 Bacterial regulatory proteins, gntR family LSO58_15940 PF02652 L-lactate permease LSO58_15945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_15945 PF03466 LysR substrate binding domain LSO58_15950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO58_15950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO58_15950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO58_15950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO58_15960 PF14052 Capsule assembly protein Wzi LSO58_15965 PF16363 GDP-mannose 4,6 dehydratase LSO58_15970 PF00342 Phosphoglucose isomerase LSO58_15975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LSO58_15975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LSO58_15975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LSO58_15980 PF00483 Nucleotidyl transferase LSO58_15985 PF02397 Bacterial sugar transferase LSO58_15990 PF00535 Glycosyl transferase family 2 LSO58_15995 PF00534 Glycosyl transferases group 1 LSO58_16000 PF00535 Glycosyl transferase family 2 LSO58_16010 PF01501 Glycosyl transferase family 8 LSO58_16010 PF00535 Glycosyl transferase family 2 LSO58_16020 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LSO58_16020 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LSO58_16020 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LSO58_16025 PF02563 Polysaccharide biosynthesis/export protein LSO58_16025 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LSO58_16025 PF10531 SLBB domain LSO58_16030 PF01451 Low molecular weight phosphotyrosine protein phosphatase LSO58_16035 PF13614 AAA domain LSO58_16035 PF13807 G-rich domain on putative tyrosine kinase LSO58_16035 PF02706 Chain length determinant protein LSO58_16040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO58_16040 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LSO58_16045 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LSO58_16045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO58_16050 PF03023 Lipid II flippase MurJ LSO58_16055 PF01510 N-acetylmuramoyl-L-alanine amidase LSO58_16060 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LSO58_16060 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LSO58_16070 PF05506 Domain of unknown function (DUF756) LSO58_16070 PF04185 Phosphoesterase family LSO58_16075 PF01138 3' exoribonuclease family, domain 1 LSO58_16075 PF03725 3' exoribonuclease family, domain 2 LSO58_16080 PF00487 Fatty acid desaturase LSO58_16085 PF00175 Oxidoreductase NAD-binding domain LSO58_16090 PF00440 Bacterial regulatory proteins, tetR family LSO58_16095 PF00440 Bacterial regulatory proteins, tetR family LSO58_16095 PF08360 QacR-like protein, C-terminal region LSO58_16100 PF01323 DSBA-like thioredoxin domain LSO58_16110 PF13419 Haloacid dehalogenase-like hydrolase LSO58_16115 PF00106 short chain dehydrogenase LSO58_16135 PF00696 Amino acid kinase family LSO58_16135 PF00583 Acetyltransferase (GNAT) family LSO58_16140 PF09084 NMT1/THI5 like LSO58_16145 PF09084 NMT1/THI5 like LSO58_16150 PF00296 Luciferase-like monooxygenase LSO58_16155 PF00528 Binding-protein-dependent transport system inner membrane component LSO58_16160 PF00005 ABC transporter LSO58_16165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO58_16165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO58_16170 PF00860 Permease family LSO58_16175 PF01613 Flavin reductase like domain LSO58_16180 PF01042 Endoribonuclease L-PSP LSO58_16185 PF00857 Isochorismatase family LSO58_16190 PF00296 Luciferase-like monooxygenase LSO58_16195 PF00440 Bacterial regulatory proteins, tetR family LSO58_16195 PF08362 YcdC-like protein, C-terminal region LSO58_16200 PF12697 Alpha/beta hydrolase family LSO58_16215 PF06574 FAD synthetase LSO58_16215 PF01687 Riboflavin kinase LSO58_16220 PF08264 Anticodon-binding domain of tRNA LSO58_16220 PF00133 tRNA synthetases class I (I, L, M and V) LSO58_16220 PF06827 Zinc finger found in FPG and IleRS LSO58_16225 PF01252 Signal peptidase (SPase) II LSO58_16230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO58_16275 PF00691 OmpA family LSO58_16275 PF01389 OmpA-like transmembrane domain LSO58_16285 PF14331 ImcF-related N-terminal domain LSO58_16285 PF06744 Type VI secretion protein IcmF C-terminal LSO58_16285 PF06761 Intracellular multiplication and human macrophage-killing LSO58_16300 PF05947 Type VI secretion system, TssF LSO58_16315 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LSO58_16320 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 LSO58_16330 PF00004 ATPase family associated with various cellular activities (AAA) LSO58_16330 PF07724 AAA domain (Cdc48 subfamily) LSO58_16330 PF17871 AAA lid domain LSO58_16330 PF10431 C-terminal, D2-small domain, of ClpB protein LSO58_16335 PF06812 ImpA, N-terminal, type VI secretion system LSO58_16340 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LSO58_16400 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LSO58_16405 PF07859 alpha/beta hydrolase fold LSO58_16425 PF03466 LysR substrate binding domain LSO58_16425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_16430 PF01025 GrpE LSO58_16435 PF00012 Hsp70 protein LSO58_16450 PF13406 Transglycosylase SLT domain LSO58_16455 PF02222 ATP-grasp domain LSO58_16455 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LSO58_16460 PF00731 AIR carboxylase LSO58_16470 PF02875 Mur ligase family, glutamate ligase domain LSO58_16470 PF08245 Mur ligase middle domain LSO58_16470 PF01225 Mur ligase family, catalytic domain LSO58_16495 PF03741 Integral membrane protein TerC family LSO58_16505 PF01979 Amidohydrolase family LSO58_16510 PF00156 Phosphoribosyl transferase domain LSO58_16520 PF10411 Disulfide bond isomerase protein N-terminus LSO58_16520 PF13098 Thioredoxin-like domain LSO58_16525 PF01926 50S ribosome-binding GTPase LSO58_16525 PF12631 MnmE helical domain LSO58_16525 PF10396 GTP-binding protein TrmE N-terminus LSO58_16530 PF02096 60Kd inner membrane protein LSO58_16530 PF14849 YidC periplasmic domain LSO58_16535 PF01809 Putative membrane protein insertion efficiency factor LSO58_16540 PF00825 Ribonuclease P LSO58_16545 PF00468 Ribosomal protein L34 LSO58_16550 PF13610 DDE domain LSO58_16670 PF00437 Type II/IV secretion system protein LSO58_16685 PF17762 HTH domain found in ParB protein LSO58_16685 PF02195 ParB-like nuclease domain LSO58_16690 PF13614 AAA domain LSO58_16720 PF00580 UvrD/REP helicase N-terminal domain LSO58_16720 PF13361 UvrD-like helicase C-terminal domain LSO58_16945 PF02522 Aminoglycoside 3-N-acetyltransferase LSO58_16960 PF01435 Peptidase family M48 LSO58_16990 PF12833 Helix-turn-helix domain LSO58_17030 PF00873 AcrB/AcrD/AcrF family LSO58_17060 PF01113 Dihydrodipicolinate reductase, N-terminus LSO58_17065 PF07690 Major Facilitator Superfamily LSO58_17130 PF00512 His Kinase A (phospho-acceptor) domain LSO58_17130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_17130 PF00672 HAMP domain LSO58_17135 PF07690 Major Facilitator Superfamily LSO58_17140 PF02321 Outer membrane efflux protein LSO58_17145 PF00873 AcrB/AcrD/AcrF family LSO58_17150 PF00529 HlyD membrane-fusion protein of T1SS LSO58_17150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_17155 PF00072 Response regulator receiver domain LSO58_17155 PF00486 Transcriptional regulatory protein, C terminal LSO58_17160 PF00512 His Kinase A (phospho-acceptor) domain LSO58_17160 PF00672 HAMP domain LSO58_17160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_17170 PF02796 Helix-turn-helix domain of resolvase LSO58_17170 PF00239 Resolvase, N terminal domain LSO58_17175 PF01636 Phosphotransferase enzyme family LSO58_17180 PF00005 ABC transporter LSO58_17180 PF12848 ABC transporter LSO58_17205 PF03050 Transposase IS66 family LSO58_17205 PF13007 Transposase C of IS166 homeodomain LSO58_17205 PF13005 zinc-finger binding domain of transposase IS66 LSO58_17205 PF13817 IS66 C-terminal element LSO58_17280 PF01520 N-acetylmuramoyl-L-alanine amidase LSO58_17280 PF08239 Bacterial SH3 domain LSO58_17305 PF02899 Phage integrase, N-terminal SAM-like domain LSO58_17305 PF00589 Phage integrase family LSO58_17370 PF01131 DNA topoisomerase LSO58_17370 PF01396 Topoisomerase DNA binding C4 zinc finger LSO58_17370 PF01751 Toprim domain LSO58_17415 PF04851 Type III restriction enzyme, res subunit LSO58_17420 PF01555 DNA methylase LSO58_17430 PF00565 Staphylococcal nuclease homologue LSO58_17480 PF00271 Helicase conserved C-terminal domain LSO58_17480 PF12137 RNA polymerase recycling family C-terminal LSO58_17480 PF00176 SNF2 family N-terminal domain LSO58_17480 PF18337 RapA N-terminal Tudor like domain LSO58_17480 PF18339 RapA N-terminal Tudor like domain 1 LSO58_17510 PF13737 Transposase DDE domain LSO58_17520 PF13737 Transposase DDE domain LSO58_17570 PF17841 BID domain of Bartonella effector protein (Bep) LSO58_17570 PF02661 Fic/DOC family LSO58_17610 PF00313 'Cold-shock' DNA-binding domain LSO58_17630 PF00665 Integrase core domain LSO58_17630 PF13936 Helix-turn-helix domain LSO58_17675 PF00809 Pterin binding enzyme LSO58_17680 PF00893 Small Multidrug Resistance protein LSO58_17685 PF00132 Bacterial transferase hexapeptide (six repeats) LSO58_17695 PF00893 Small Multidrug Resistance protein LSO58_17785 PF02661 Fic/DOC family LSO58_17815 PF11798 IMS family HHH motif LSO58_17815 PF11799 impB/mucB/samB family C-terminal domain LSO58_17815 PF00817 impB/mucB/samB family LSO58_17815 PF13438 Domain of unknown function (DUF4113) LSO58_17820 PF00717 Peptidase S24-like LSO58_17820 PF01726 LexA DNA binding domain LSO58_17850 PF04233 Phage Mu protein F like protein LSO58_17855 PF13356 Arm DNA-binding domain LSO58_17855 PF00589 Phage integrase family LSO58_17890 PF13737 Transposase DDE domain LSO58_17895 PF13610 DDE domain LSO58_17910 PF00873 AcrB/AcrD/AcrF family LSO58_17915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_17935 PF07732 Multicopper oxidase LSO58_17935 PF07731 Multicopper oxidase LSO58_17935 PF00394 Multicopper oxidase LSO58_17945 PF00072 Response regulator receiver domain LSO58_17945 PF00486 Transcriptional regulatory protein, C terminal LSO58_17950 PF00512 His Kinase A (phospho-acceptor) domain LSO58_17950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO58_17950 PF00672 HAMP domain LSO58_17955 PF13194 Domain of unknown function (DUF4010) LSO58_17980 PF13610 DDE domain LSO58_17985 PF03358 NADPH-dependent FMN reductase LSO58_17990 PF01758 Sodium Bile acid symporter family LSO58_18000 PF01022 Bacterial regulatory protein, arsR family LSO58_18005 PF03960 ArsC family LSO58_18010 PF02796 Helix-turn-helix domain of resolvase LSO58_18010 PF00239 Resolvase, N terminal domain LSO58_18020 PF13610 DDE domain LSO58_18050 PF00860 Permease family LSO58_18055 PF03502 Nucleoside-specific channel-forming protein, Tsx LSO58_18070 PF03466 LysR substrate binding domain LSO58_18070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_18085 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LSO58_18085 PF03171 2OG-Fe(II) oxygenase superfamily LSO58_18090 PF00355 Rieske [2Fe-2S] domain LSO58_18150 PF13817 IS66 C-terminal element LSO58_18150 PF03050 Transposase IS66 family LSO58_18150 PF13005 zinc-finger binding domain of transposase IS66 LSO58_18150 PF13007 Transposase C of IS166 homeodomain LSO58_18165 PF13610 DDE domain LSO58_18175 PF13610 DDE domain LSO58_18185 PF07670 Nucleoside recognition LSO58_18185 PF07664 Ferrous iron transport protein B C terminus LSO58_18185 PF02421 Ferrous iron transport protein B LSO58_18195 PF01545 Cation efflux family LSO58_18200 PF13411 MerR HTH family regulatory protein LSO58_18215 PF13610 DDE domain LSO58_18225 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO58_18230 PF00873 AcrB/AcrD/AcrF family LSO58_18235 PF01545 Cation efflux family LSO58_18250 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO58_18400 PF00437 Type II/IV secretion system protein LSO58_18400 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LSO58_18450 PF13614 AAA domain LSO58_18455 PF17762 HTH domain found in ParB protein LSO58_18455 PF02195 ParB-like nuclease domain LSO58_18475 PF01551 Peptidase family M23 LSO58_18475 PF04225 Opacity-associated protein A LysM-like domain LSO58_18585 PF00816 H-NS histone family LSO58_18615 PF01435 Peptidase family M48 LSO58_18620 PF01119 DNA mismatch repair protein, C-terminal domain LSO58_18620 PF08676 MutL C terminal dimerisation domain LSO58_18645 PF13438 Domain of unknown function (DUF4113) LSO58_18645 PF00817 impB/mucB/samB family LSO58_18645 PF11799 impB/mucB/samB family C-terminal domain LSO58_18670 PF00589 Phage integrase family LSO58_18670 PF02899 Phage integrase, N-terminal SAM-like domain LSO58_18700 PF01396 Topoisomerase DNA binding C4 zinc finger LSO58_18700 PF01751 Toprim domain LSO58_18700 PF01131 DNA topoisomerase LSO58_18755 PF00817 impB/mucB/samB family LSO58_18755 PF13438 Domain of unknown function (DUF4113) LSO58_18755 PF11799 impB/mucB/samB family C-terminal domain LSO58_18760 PF00717 Peptidase S24-like LSO58_18760 PF01726 LexA DNA binding domain LSO58_18775 PF00199 Catalase LSO58_18775 PF06628 Catalase-related immune-responsive LSO58_18775 PF18011 C-terminal domain found in long catalases LSO58_18780 PF04239 Protein of unknown function (DUF421) LSO58_18825 PF07690 Major Facilitator Superfamily LSO58_18830 PF00982 Glycosyltransferase family 20 LSO58_18835 PF02358 Trehalose-phosphatase LSO58_18850 PF13742 OB-fold nucleic acid binding domain LSO58_18850 PF02601 Exonuclease VII, large subunit LSO58_18880 PF00440 Bacterial regulatory proteins, tetR family LSO58_18880 PF16925 Tetracyclin repressor-like, C-terminal domain LSO58_18885 PF00107 Zinc-binding dehydrogenase LSO58_18885 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_18895 PF17755 UvrA DNA-binding domain LSO58_18915 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LSO58_18930 PF01695 IstB-like ATP binding protein LSO58_18935 PF00665 Integrase core domain LSO58_18935 PF02796 Helix-turn-helix domain of resolvase LSO58_18955 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LSO58_18970 PF00753 Metallo-beta-lactamase superfamily LSO58_18970 PF14863 Alkyl sulfatase dimerisation LSO58_18970 PF14864 Alkyl sulfatase C-terminal LSO58_18990 PF13356 Arm DNA-binding domain LSO58_18990 PF00589 Phage integrase family LSO58_18995 PF13737 Transposase DDE domain LSO58_19005 PF16884 N-terminal domain of oxidoreductase LSO58_19005 PF00107 Zinc-binding dehydrogenase LSO58_19010 PF00440 Bacterial regulatory proteins, tetR family LSO58_19010 PF16925 Tetracyclin repressor-like, C-terminal domain LSO58_19020 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO58_19030 PF00465 Iron-containing alcohol dehydrogenase LSO58_19045 PF00756 Putative esterase LSO58_19050 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_19050 PF00107 Zinc-binding dehydrogenase LSO58_19055 PF02583 Metal-sensitive transcriptional repressor LSO58_19060 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO58_19060 PF08659 KR domain LSO58_19060 PF00550 Phosphopantetheine attachment site LSO58_19060 PF14765 Polyketide synthase dehydratase LSO58_19060 PF16197 Ketoacyl-synthetase C-terminal extension LSO58_19060 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO58_19060 PF00698 Acyl transferase domain LSO58_19060 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_19065 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_19065 PF00107 Zinc-binding dehydrogenase LSO58_19070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO58_19070 PF03466 LysR substrate binding domain LSO58_19075 PF00106 short chain dehydrogenase LSO58_19080 PF08240 Alcohol dehydrogenase GroES-like domain LSO58_19080 PF00107 Zinc-binding dehydrogenase LSO58_19110 PF13737 Transposase DDE domain LSO58_19115 PF05230 MASE2 domain LSO58_19115 PF00990 Diguanylate cyclase, GGDEF domain LSO58_19130 PF00155 Aminotransferase class I and II LSO58_19130 PF00392 Bacterial regulatory proteins, gntR family LSO58_19140 PF01266 FAD dependent oxidoreductase LSO58_19145 PF00324 Amino acid permease LSO58_19150 PF00892 EamA-like transporter family LSO58_19210 PF17762 HTH domain found in ParB protein LSO58_19210 PF02195 ParB-like nuclease domain LSO58_19215 PF13614 AAA domain LSO58_19230 PF13737 Transposase DDE domain LSO58_19255 PF03432 Relaxase/Mobilisation nuclease domain