locus-tag class description LSO59_00005 PF00308 Bacterial dnaA protein LSO59_00005 PF08299 Bacterial dnaA protein helix-turn-helix LSO59_00005 PF11638 DnaA N-terminal domain LSO59_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LSO59_00010 PF02767 DNA polymerase III beta subunit, central domain LSO59_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LSO59_00015 PF02463 RecF/RecN/SMC N terminal domain LSO59_00020 PF00204 DNA gyrase B LSO59_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LSO59_00020 PF18053 DNA gyrase B subunit insert domain LSO59_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_00020 PF01751 Toprim domain LSO59_00030 PF00005 ABC transporter LSO59_00030 PF12848 ABC transporter LSO59_00050 PF01521 Iron-sulphur cluster biosynthesis LSO59_00055 PF03702 Anhydro-N-acetylmuramic acid kinase LSO59_00060 PF00579 tRNA synthetases class I (W and Y) LSO59_00095 PF01965 DJ-1/PfpI family LSO59_00100 PF15887 Putative zinc-binding metallo-peptidase LSO59_00100 PF10005 zinc-ribbon domain LSO59_00110 PF00171 Aldehyde dehydrogenase family LSO59_00115 PF00209 Sodium:neurotransmitter symporter family LSO59_00125 PF02535 ZIP Zinc transporter LSO59_00130 PF01189 16S rRNA methyltransferase RsmB/F LSO59_00130 PF01029 NusB family LSO59_00135 PF02911 Formyl transferase, C-terminal domain LSO59_00135 PF00551 Formyl transferase LSO59_00140 PF00920 Dehydratase family LSO59_00150 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_00155 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO59_00170 PF00860 Permease family LSO59_00175 PF00311 Phosphoenolpyruvate carboxylase LSO59_00180 PF00440 Bacterial regulatory proteins, tetR family LSO59_00185 PF13533 Biotin-lipoyl like LSO59_00190 PF00873 AcrB/AcrD/AcrF family LSO59_00200 PF00226 DnaJ domain LSO59_00200 PF01556 DnaJ C terminal domain LSO59_00200 PF00684 DnaJ central domain LSO59_00205 PF05173 Dihydrodipicolinate reductase, C-terminus LSO59_00205 PF01113 Dihydrodipicolinate reductase, N-terminus LSO59_00215 PF07690 Major Facilitator Superfamily LSO59_00220 PF03466 LysR substrate binding domain LSO59_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_00230 PF00155 Aminotransferase class I and II LSO59_00230 PF00392 Bacterial regulatory proteins, gntR family LSO59_00235 PF00107 Zinc-binding dehydrogenase LSO59_00235 PF08240 Alcohol dehydrogenase GroES-like domain LSO59_00240 PF03352 Methyladenine glycosylase LSO59_00255 PF14815 NUDIX domain LSO59_00255 PF00730 HhH-GPD superfamily base excision DNA repair protein LSO59_00260 PF01230 HIT domain LSO59_00265 PF01738 Dienelactone hydrolase family LSO59_00270 PF07043 Protein of unknown function (DUF1328) LSO59_00275 PF03692 Putative zinc- or iron-chelating domain LSO59_00285 PF13411 MerR HTH family regulatory protein LSO59_00290 PF07995 Glucose / Sorbosone dehydrogenase LSO59_00295 PF00144 Beta-lactamase LSO59_00300 PF12002 MgsA AAA+ ATPase C terminal LSO59_00300 PF16193 AAA C-terminal domain LSO59_00300 PF00004 ATPase family associated with various cellular activities (AAA) LSO59_00305 PF01226 Formate/nitrite transporter LSO59_00310 PF01259 SAICAR synthetase LSO59_00320 PF00701 Dihydrodipicolinate synthetase family LSO59_00325 PF00857 Isochorismatase family LSO59_00330 PF01758 Sodium Bile acid symporter family LSO59_00335 PF14542 GCN5-related N-acetyl-transferase LSO59_00350 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LSO59_00350 PF02753 Pili assembly chaperone PapD, C-terminal domain LSO59_00355 PF00577 Outer membrane usher protein LSO59_00355 PF13954 PapC N-terminal domain LSO59_00355 PF13953 PapC C-terminal domain LSO59_00365 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LSO59_00365 PF02753 Pili assembly chaperone PapD, C-terminal domain LSO59_00380 PF01380 SIS domain LSO59_00385 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_00385 PF14602 Hexapeptide repeat of succinyl-transferase LSO59_00385 PF12804 MobA-like NTP transferase domain LSO59_00390 PF04608 Phosphatidylglycerophosphatase A LSO59_00395 PF02769 AIR synthase related protein, C-terminal domain LSO59_00395 PF00586 AIR synthase related protein, N-terminal domain LSO59_00400 PF01029 NusB family LSO59_00405 PF00885 6,7-dimethyl-8-ribityllumazine synthase LSO59_00410 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LSO59_00410 PF00925 GTP cyclohydrolase II LSO59_00435 PF02580 D-Tyr-tRNA(Tyr) deacylase LSO59_00440 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LSO59_00440 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LSO59_00445 PF00581 Rhodanese-like domain LSO59_00450 PF02666 Phosphatidylserine decarboxylase LSO59_00460 PF00106 short chain dehydrogenase LSO59_00465 PF03928 Haem-degrading LSO59_00470 PF00512 His Kinase A (phospho-acceptor) domain LSO59_00470 PF00989 PAS fold LSO59_00470 PF11808 Phosphate regulon sensor protein PhoR LSO59_00470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_00475 PF00072 Response regulator receiver domain LSO59_00475 PF00486 Transcriptional regulatory protein, C terminal LSO59_00485 PF00106 short chain dehydrogenase LSO59_00495 PF00155 Aminotransferase class I and II LSO59_00500 PF04286 Protein of unknown function (DUF445) LSO59_00515 PF04262 Glutamate-cysteine ligase LSO59_00520 PF02600 Disulfide bond formation protein DsbB LSO59_00530 PF05728 Uncharacterised protein family (UPF0227) LSO59_00535 PF01751 Toprim domain LSO59_00535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_00535 PF00986 DNA gyrase B subunit, carboxyl terminus LSO59_00535 PF00204 DNA gyrase B LSO59_00565 PF00145 C-5 cytosine-specific DNA methylase LSO59_00570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_00570 PF13188 PAS domain LSO59_00570 PF13426 PAS domain LSO59_00595 PF04115 Ureidoglycolate lyase LSO59_00600 PF03561 Allantoicase repeat LSO59_00605 PF01494 FAD binding domain LSO59_00615 PF00583 Acetyltransferase (GNAT) family LSO59_00625 PF00576 HIUase/Transthyretin family LSO59_00655 PF02683 Cytochrome C biogenesis protein transmembrane region LSO59_00655 PF11412 Disulphide bond corrector protein DsbC LSO59_00660 PF00043 Glutathione S-transferase, C-terminal domain LSO59_00660 PF02798 Glutathione S-transferase, N-terminal domain LSO59_00665 PF00990 Diguanylate cyclase, GGDEF domain LSO59_00665 PF08448 PAS fold LSO59_00670 PF07859 alpha/beta hydrolase fold LSO59_00680 PF03960 ArsC family LSO59_00685 PF03372 Endonuclease/Exonuclease/phosphatase family LSO59_00690 PF00156 Phosphoribosyl transferase domain LSO59_00700 PF13737 Transposase DDE domain LSO59_00705 PF00313 'Cold-shock' DNA-binding domain LSO59_00710 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LSO59_00710 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LSO59_00715 PF03033 Glycosyltransferase family 28 N-terminal domain LSO59_00715 PF04101 Glycosyltransferase family 28 C-terminal domain LSO59_00720 PF02875 Mur ligase family, glutamate ligase domain LSO59_00720 PF01225 Mur ligase family, catalytic domain LSO59_00720 PF08245 Mur ligase middle domain LSO59_00725 PF01820 D-ala D-ala ligase N-terminus LSO59_00725 PF07478 D-ala D-ala ligase C-terminus LSO59_00730 PF03799 Cell division protein FtsQ LSO59_00730 PF08478 POTRA domain, FtsQ-type LSO59_00735 PF02491 SHS2 domain inserted in FTSA LSO59_00740 PF12327 FtsZ family, C-terminal domain LSO59_00740 PF00091 Tubulin/FtsZ family, GTPase domain LSO59_00745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LSO59_00760 PF17831 Pyruvate dehydrogenase E1 component middle domain LSO59_00760 PF00456 Transketolase, thiamine diphosphate binding domain LSO59_00765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LSO59_00765 PF00364 Biotin-requiring enzyme LSO59_00765 PF02817 e3 binding domain LSO59_00775 PF01169 Uncharacterized protein family UPF0016 LSO59_00780 PF01613 Flavin reductase like domain LSO59_00780 PF00258 Flavodoxin LSO59_00790 PF00571 CBS domain LSO59_00790 PF00478 IMP dehydrogenase / GMP reductase domain LSO59_00795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO59_00795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO59_00795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO59_00795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO59_00800 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LSO59_00800 PF01243 Pyridoxamine 5'-phosphate oxidase LSO59_00805 PF02272 DHHA1 domain LSO59_00805 PF17768 RecJ OB domain LSO59_00805 PF01368 DHH family LSO59_00810 PF01381 Helix-turn-helix LSO59_00835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO59_00845 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LSO59_00855 PF05552 Conserved TM helix LSO59_00855 PF00924 Mechanosensitive ion channel LSO59_00865 PF16177 Acetyl-coenzyme A synthetase N-terminus LSO59_00865 PF00501 AMP-binding enzyme LSO59_00865 PF13193 AMP-binding enzyme C-terminal domain LSO59_00870 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO59_00870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_00875 PF00593 TonB dependent receptor LSO59_00875 PF07715 TonB-dependent Receptor Plug Domain LSO59_00875 PF07660 Secretin and TonB N terminus short domain LSO59_00880 PF00296 Luciferase-like monooxygenase LSO59_00885 PF03358 NADPH-dependent FMN reductase LSO59_00890 PF00196 Bacterial regulatory proteins, luxR family LSO59_00890 PF00072 Response regulator receiver domain LSO59_00895 PF00909 Ammonium Transporter Family LSO59_00910 PF00512 His Kinase A (phospho-acceptor) domain LSO59_00910 PF09308 LuxQ, periplasmic LSO59_00910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_00910 PF00072 Response regulator receiver domain LSO59_00915 PF04341 Protein of unknown function, DUF485 LSO59_00920 PF00474 Sodium:solute symporter family LSO59_00965 PF13737 Transposase DDE domain LSO59_01050 PF01638 HxlR-like helix-turn-helix LSO59_01055 PF02525 Flavodoxin-like fold LSO59_01090 PF13614 AAA domain LSO59_01105 PF09335 SNARE associated Golgi protein LSO59_01110 PF07681 DoxX LSO59_01115 PF04076 Bacterial OB fold (BOF) protein LSO59_01120 PF00117 Glutamine amidotransferase class-I LSO59_01120 PF02540 NAD synthase LSO59_01120 PF00958 GMP synthase C terminal domain LSO59_01125 PF13427 Domain of unknown function (DUF4111) LSO59_01125 PF01909 Nucleotidyltransferase domain LSO59_01130 PF03551 Transcriptional regulator PadR-like family LSO59_01135 PF01475 Ferric uptake regulator family LSO59_01145 PF05726 Pirin C-terminal cupin domain LSO59_01145 PF02678 Pirin LSO59_01170 PF00750 tRNA synthetases class I (R) LSO59_01170 PF05746 DALR anticodon binding domain LSO59_01170 PF03485 Arginyl tRNA synthetase N terminal domain LSO59_01180 PF03949 Malic enzyme, NAD binding domain LSO59_01180 PF00390 Malic enzyme, N-terminal domain LSO59_01195 PF01810 LysE type translocator LSO59_01200 PF00950 ABC 3 transport family LSO59_01205 PF00005 ABC transporter LSO59_01225 PF00119 ATP synthase A chain LSO59_01230 PF00137 ATP synthase subunit C LSO59_01235 PF00430 ATP synthase B/B' CF(0) LSO59_01240 PF00213 ATP synthase delta (OSCP) subunit LSO59_01245 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO59_01245 PF00306 ATP synthase alpha/beta chain, C terminal domain LSO59_01245 PF02874 ATP synthase alpha/beta family, beta-barrel domain LSO59_01250 PF00231 ATP synthase LSO59_01255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO59_01255 PF02874 ATP synthase alpha/beta family, beta-barrel domain LSO59_01260 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LSO59_01270 PF01263 Aldose 1-epimerase LSO59_01275 PF08240 Alcohol dehydrogenase GroES-like domain LSO59_01275 PF00107 Zinc-binding dehydrogenase LSO59_01285 PF00082 Subtilase family LSO59_01285 PF05922 Peptidase inhibitor I9 LSO59_01290 PF00255 Glutathione peroxidase LSO59_01300 PF07690 Major Facilitator Superfamily LSO59_01305 PF00440 Bacterial regulatory proteins, tetR family LSO59_01310 PF00892 EamA-like transporter family LSO59_01315 PF02608 ABC transporter substrate-binding protein PnrA-like LSO59_01320 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO59_01320 PF00355 Rieske [2Fe-2S] domain LSO59_01335 PF03466 LysR substrate binding domain LSO59_01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_01350 PF00005 ABC transporter LSO59_01355 PF02653 Branched-chain amino acid transport system / permease component LSO59_01360 PF02653 Branched-chain amino acid transport system / permease component LSO59_01365 PF01300 Telomere recombination LSO59_01370 PF17782 DprA winged helix domain LSO59_01370 PF02481 DNA recombination-mediator protein A LSO59_01375 PF01476 LysM domain LSO59_01380 PF01327 Polypeptide deformylase LSO59_01405 PF00440 Bacterial regulatory proteins, tetR family LSO59_01440 PF04055 Radical SAM superfamily LSO59_01440 PF11842 Domain of unknown function (DUF3362) LSO59_01440 PF08497 Radical SAM N-terminal LSO59_01455 PF07690 Major Facilitator Superfamily LSO59_01455 PF00083 Sugar (and other) transporter LSO59_01460 PF11799 impB/mucB/samB family C-terminal domain LSO59_01460 PF11798 IMS family HHH motif LSO59_01460 PF00817 impB/mucB/samB family LSO59_01465 PF01183 Glycosyl hydrolases family 25 LSO59_01470 PF07690 Major Facilitator Superfamily LSO59_01475 PF03641 Possible lysine decarboxylase LSO59_01480 PF03471 Transporter associated domain LSO59_01480 PF03741 Integral membrane protein TerC family LSO59_01485 PF02810 SEC-C motif LSO59_01490 PF03458 UPF0126 domain LSO59_01500 PF07690 Major Facilitator Superfamily LSO59_01505 PF03989 DNA gyrase C-terminal domain, beta-propeller LSO59_01505 PF00521 DNA gyrase/topoisomerase IV, subunit A LSO59_01510 PF00501 AMP-binding enzyme LSO59_01510 PF13193 AMP-binding enzyme C-terminal domain LSO59_01525 PF00719 Inorganic pyrophosphatase LSO59_01540 PF01078 Magnesium chelatase, subunit ChlI LSO59_01540 PF13335 Magnesium chelatase, subunit ChlI C-terminal LSO59_01550 PF00543 Nitrogen regulatory protein P-II LSO59_01555 PF00909 Ammonium Transporter Family LSO59_01560 PF03477 ATP cone domain LSO59_01565 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LSO59_01565 PF01872 RibD C-terminal domain LSO59_01575 PF00677 Lumazine binding domain LSO59_01595 PF00883 Cytosol aminopeptidase family, catalytic domain LSO59_01595 PF02789 Cytosol aminopeptidase family, N-terminal domain LSO59_01600 PF03739 Lipopolysaccharide export system permease LptF/LptG LSO59_01605 PF03739 Lipopolysaccharide export system permease LptF/LptG LSO59_01610 PF01676 Metalloenzyme superfamily LSO59_01610 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LSO59_01615 PF01471 Putative peptidoglycan binding domain LSO59_01615 PF03572 Peptidase family S41 LSO59_01615 PF17820 PDZ domain LSO59_01620 PF00072 Response regulator receiver domain LSO59_01620 PF00158 Sigma-54 interaction domain LSO59_01620 PF02954 Bacterial regulatory protein, Fis family LSO59_01625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_01625 PF00512 His Kinase A (phospho-acceptor) domain LSO59_01630 PF00196 Bacterial regulatory proteins, luxR family LSO59_01630 PF00072 Response regulator receiver domain LSO59_01635 PF00768 D-alanyl-D-alanine carboxypeptidase LSO59_01640 PF00291 Pyridoxal-phosphate dependent enzyme LSO59_01645 PF03447 Homoserine dehydrogenase, NAD binding domain LSO59_01645 PF00742 Homoserine dehydrogenase LSO59_01645 PF01842 ACT domain LSO59_01650 PF10411 Disulfide bond isomerase protein N-terminus LSO59_01650 PF13098 Thioredoxin-like domain LSO59_01655 PF02899 Phage integrase, N-terminal SAM-like domain LSO59_01655 PF00589 Phage integrase family LSO59_01665 PF07664 Ferrous iron transport protein B C terminus LSO59_01665 PF02421 Ferrous iron transport protein B LSO59_01665 PF07670 Nucleoside recognition LSO59_01675 PF02875 Mur ligase family, glutamate ligase domain LSO59_01675 PF08245 Mur ligase middle domain LSO59_01680 PF01098 Cell cycle protein LSO59_01685 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO59_01690 PF01258 Prokaryotic dksA/traR C4-type zinc finger LSO59_01695 PF00149 Calcineurin-like phosphoesterase LSO59_01700 PF00293 NUDIX domain LSO59_01705 PF13667 ThiC-associated domain LSO59_01705 PF01964 Radical SAM ThiC family LSO59_01715 PF01895 PhoU domain LSO59_01720 PF04362 Bacterial Fe(2+) trafficking LSO59_01725 PF00206 Lyase LSO59_01725 PF14698 Argininosuccinate lyase C-terminal LSO59_01730 PF06580 Histidine kinase LSO59_01730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_01730 PF07694 5TMR of 5TMR-LYT LSO59_01735 PF00072 Response regulator receiver domain LSO59_01735 PF04397 LytTr DNA-binding domain LSO59_01740 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LSO59_01740 PF03900 Porphobilinogen deaminase, C-terminal domain LSO59_01770 PF00816 H-NS histone family LSO59_01785 PF00263 Bacterial type II and III secretion system protein LSO59_01785 PF03958 Bacterial type II/III secretion system short domain LSO59_01790 PF12401 Protein of unknown function (DUF2662) LSO59_01790 PF00498 FHA domain LSO59_01795 PF13419 Haloacid dehalogenase-like hydrolase LSO59_01800 PF00425 chorismate binding enzyme LSO59_01800 PF04715 Anthranilate synthase component I, N terminal region LSO59_01825 PF00009 Elongation factor Tu GTP binding domain LSO59_01825 PF03144 Elongation factor Tu domain 2 LSO59_01825 PF03143 Elongation factor Tu C-terminal domain LSO59_01835 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LSO59_01840 PF00467 KOW motif LSO59_01840 PF02357 Transcription termination factor nusG LSO59_01845 PF00298 Ribosomal protein L11, RNA binding domain LSO59_01845 PF03946 Ribosomal protein L11, N-terminal domain LSO59_01850 PF00687 Ribosomal protein L1p/L10e family LSO59_01855 PF00466 Ribosomal protein L10 LSO59_01860 PF00542 Ribosomal protein L7/L12 C-terminal domain LSO59_01860 PF16320 Ribosomal protein L7/L12 dimerisation domain LSO59_01865 PF04563 RNA polymerase beta subunit LSO59_01865 PF04561 RNA polymerase Rpb2, domain 2 LSO59_01865 PF10385 RNA polymerase beta subunit external 1 domain LSO59_01865 PF00562 RNA polymerase Rpb2, domain 6 LSO59_01865 PF04560 RNA polymerase Rpb2, domain 7 LSO59_01865 PF04565 RNA polymerase Rpb2, domain 3 LSO59_01870 PF04997 RNA polymerase Rpb1, domain 1 LSO59_01870 PF04983 RNA polymerase Rpb1, domain 3 LSO59_01870 PF05000 RNA polymerase Rpb1, domain 4 LSO59_01870 PF04998 RNA polymerase Rpb1, domain 5 LSO59_01870 PF00623 RNA polymerase Rpb1, domain 2 LSO59_01885 PF00561 alpha/beta hydrolase fold LSO59_01890 PF00324 Amino acid permease LSO59_01905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_01905 PF00183 Hsp90 protein LSO59_01940 PF01323 DSBA-like thioredoxin domain LSO59_01950 PF00210 Ferritin-like domain LSO59_01955 PF04324 BFD-like [2Fe-2S] binding domain LSO59_01960 PF01042 Endoribonuclease L-PSP LSO59_01965 PF13291 ACT domain LSO59_01965 PF04607 Region found in RelA / SpoT proteins LSO59_01965 PF02824 TGS domain LSO59_01970 PF01192 RNA polymerase Rpb6 LSO59_01975 PF00625 Guanylate kinase LSO59_01980 PF02401 LytB protein LSO59_02010 PF00114 Pilin (bacterial filament) LSO59_02010 PF07963 Prokaryotic N-terminal methylation motif LSO59_02020 PF00886 Ribosomal protein S16 LSO59_02025 PF05239 PRC-barrel domain LSO59_02025 PF01782 RimM N-terminal domain LSO59_02030 PF01746 tRNA (Guanine-1)-methyltransferase LSO59_02035 PF01245 Ribosomal protein L19 LSO59_02040 PF00561 alpha/beta hydrolase fold LSO59_02045 PF03280 Proteobacterial lipase chaperone protein LSO59_02050 PF01509 TruB family pseudouridylate synthase (N terminal domain) LSO59_02050 PF09157 Pseudouridine synthase II TruB, C-terminal LSO59_02050 PF16198 tRNA pseudouridylate synthase B C-terminal domain LSO59_02055 PF01925 Sulfite exporter TauE/SafE LSO59_02065 PF00892 EamA-like transporter family LSO59_02070 PF00892 EamA-like transporter family LSO59_02075 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO59_02075 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO59_02080 PF01565 FAD binding domain LSO59_02080 PF02913 FAD linked oxidases, C-terminal domain LSO59_02095 PF13737 Transposase DDE domain LSO59_02105 PF03992 Antibiotic biosynthesis monooxygenase LSO59_02110 PF02525 Flavodoxin-like fold LSO59_02115 PF07690 Major Facilitator Superfamily LSO59_02120 PF12823 Domain of unknown function (DUF3817) LSO59_02130 PF13737 Transposase DDE domain LSO59_02135 PF01594 AI-2E family transporter LSO59_02140 PF13614 AAA domain LSO59_02165 PF00248 Aldo/keto reductase family LSO59_02185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO59_02185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO59_02200 PF03466 LysR substrate binding domain LSO59_02200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_02205 PF00892 EamA-like transporter family LSO59_02215 PF02092 Glycyl-tRNA synthetase beta subunit LSO59_02215 PF05746 DALR anticodon binding domain LSO59_02220 PF02091 Glycyl-tRNA synthetase alpha subunit LSO59_02235 PF00571 CBS domain LSO59_02240 PF04024 PspC domain LSO59_02250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_02250 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_02250 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO59_02250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_02260 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LSO59_02260 PF08501 Shikimate dehydrogenase substrate binding domain LSO59_02260 PF01488 Shikimate / quinate 5-dehydrogenase LSO59_02265 PF13488 Glycine zipper LSO59_02265 PF00691 OmpA family LSO59_02275 PF01218 Coproporphyrinogen III oxidase LSO59_02280 PF00925 GTP cyclohydrolase II LSO59_02285 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LSO59_02285 PF02779 Transketolase, pyrimidine binding domain LSO59_02285 PF02780 Transketolase, C-terminal domain LSO59_02290 PF00459 Inositol monophosphatase family LSO59_02305 PF00270 DEAD/DEAH box helicase LSO59_02305 PF00271 Helicase conserved C-terminal domain LSO59_02315 PF00005 ABC transporter LSO59_02320 PF02405 Permease MlaE LSO59_02340 PF01544 CorA-like Mg2+ transporter protein LSO59_02345 PF03641 Possible lysine decarboxylase LSO59_02350 PF00293 NUDIX domain LSO59_02355 PF00156 Phosphoribosyl transferase domain LSO59_02360 PF00271 Helicase conserved C-terminal domain LSO59_02360 PF17191 RecG wedge domain LSO59_02360 PF00270 DEAD/DEAH box helicase LSO59_02375 PF01553 Acyltransferase LSO59_02385 PF00375 Sodium:dicarboxylate symporter family LSO59_02395 PF01926 50S ribosome-binding GTPase LSO59_02400 PF02082 Transcriptional regulator LSO59_02405 PF00175 Oxidoreductase NAD-binding domain LSO59_02405 PF00970 Oxidoreductase FAD-binding domain LSO59_02405 PF00042 Globin LSO59_02410 PF05872 Bacterial protein of unknown function (DUF853) LSO59_02415 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO59_02420 PF00117 Glutamine amidotransferase class-I LSO59_02425 PF00338 Ribosomal protein S10p/S20e LSO59_02430 PF00297 Ribosomal protein L3 LSO59_02435 PF00573 Ribosomal protein L4/L1 family LSO59_02440 PF00276 Ribosomal protein L23 LSO59_02445 PF03947 Ribosomal Proteins L2, C-terminal domain LSO59_02445 PF00181 Ribosomal Proteins L2, RNA binding domain LSO59_02450 PF00203 Ribosomal protein S19 LSO59_02455 PF00237 Ribosomal protein L22p/L17e LSO59_02465 PF00252 Ribosomal protein L16p/L10e LSO59_02470 PF00831 Ribosomal L29 protein LSO59_02475 PF00366 Ribosomal protein S17 LSO59_02480 PF00238 Ribosomal protein L14p/L23e LSO59_02485 PF00467 KOW motif LSO59_02485 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LSO59_02490 PF00281 Ribosomal protein L5 LSO59_02490 PF00673 ribosomal L5P family C-terminus LSO59_02495 PF00253 Ribosomal protein S14p/S29e LSO59_02500 PF00410 Ribosomal protein S8 LSO59_02505 PF00347 Ribosomal protein L6 LSO59_02510 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LSO59_02515 PF00333 Ribosomal protein S5, N-terminal domain LSO59_02515 PF03719 Ribosomal protein S5, C-terminal domain LSO59_02520 PF00327 Ribosomal protein L30p/L7e LSO59_02525 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LSO59_02530 PF00344 SecY translocase LSO59_02535 PF00444 Ribosomal protein L36 LSO59_02540 PF00416 Ribosomal protein S13/S18 LSO59_02545 PF00411 Ribosomal protein S11 LSO59_02550 PF00163 Ribosomal protein S4/S9 N-terminal domain LSO59_02550 PF01479 S4 domain LSO59_02555 PF01000 RNA polymerase Rpb3/RpoA insert domain LSO59_02555 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LSO59_02555 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LSO59_02560 PF01196 Ribosomal protein L17 LSO59_02565 PF00743 Flavin-binding monooxygenase-like LSO59_02570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_02570 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_02570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_02575 PF03937 Flavinator of succinate dehydrogenase LSO59_02605 PF09526 Probable metal-binding protein (DUF2387) LSO59_02610 PF01432 Peptidase family M3 LSO59_02620 PF17876 Cold shock domain LSO59_02620 PF08461 Ribonuclease R winged-helix domain LSO59_02620 PF08206 Ribonuclease B OB domain LSO59_02620 PF00773 RNB domain LSO59_02620 PF00575 S1 RNA binding domain LSO59_02645 PF13426 PAS domain LSO59_02645 PF08448 PAS fold LSO59_02645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_02645 PF00512 His Kinase A (phospho-acceptor) domain LSO59_02645 PF00072 Response regulator receiver domain LSO59_02665 PF01557 Fumarylacetoacetate (FAA) hydrolase family LSO59_02670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO59_02675 PF07690 Major Facilitator Superfamily LSO59_02680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_02680 PF03466 LysR substrate binding domain LSO59_02695 PF03631 Virulence factor BrkB LSO59_02700 PF03358 NADPH-dependent FMN reductase LSO59_02730 PF02130 Uncharacterized protein family UPF0054 LSO59_02735 PF02562 PhoH-like protein LSO59_02740 PF00919 Uncharacterized protein family UPF0004 LSO59_02740 PF01938 TRAM domain LSO59_02740 PF04055 Radical SAM superfamily LSO59_02745 PF10145 Phage-related minor tail protein LSO59_02745 PF01551 Peptidase family M23 LSO59_02745 PF01464 Transglycosylase SLT domain LSO59_02755 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LSO59_02755 PF00056 lactate/malate dehydrogenase, NAD binding domain LSO59_02775 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LSO59_02780 PF01066 CDP-alcohol phosphatidyltransferase LSO59_02840 PF04386 Stringent starvation protein B LSO59_02845 PF02798 Glutathione S-transferase, N-terminal domain LSO59_02845 PF00043 Glutathione S-transferase, C-terminal domain LSO59_02850 PF00380 Ribosomal protein S9/S16 LSO59_02855 PF00572 Ribosomal protein L13 LSO59_02860 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LSO59_02865 PF00398 Ribosomal RNA adenine dimethylase LSO59_02870 PF00149 Calcineurin-like phosphoesterase LSO59_02890 PF01926 50S ribosome-binding GTPase LSO59_02890 PF13167 GTP-binding GTPase N-terminal LSO59_02890 PF16360 GTP-binding GTPase Middle Region LSO59_02905 PF13091 PLD-like domain LSO59_02910 PF00149 Calcineurin-like phosphoesterase LSO59_02910 PF10518 TAT (twin-arginine translocation) pathway signal sequence LSO59_02915 PF07690 Major Facilitator Superfamily LSO59_02915 PF00083 Sugar (and other) transporter LSO59_02920 PF03006 Haemolysin-III related LSO59_02930 PF13673 Acetyltransferase (GNAT) domain LSO59_02940 PF01734 Patatin-like phospholipase LSO59_02950 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO59_02950 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO59_02950 PF00378 Enoyl-CoA hydratase/isomerase LSO59_02955 PF02803 Thiolase, C-terminal domain LSO59_02955 PF00108 Thiolase, N-terminal domain LSO59_02960 PF01202 Shikimate kinase LSO59_02970 PF02311 AraC-like ligand binding domain LSO59_02970 PF12833 Helix-turn-helix domain LSO59_02975 PF02515 CoA-transferase family III LSO59_02980 PF04966 Carbohydrate-selective porin, OprB family LSO59_02985 PF01011 PQQ enzyme repeat LSO59_02990 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO59_02990 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO59_03000 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO59_03000 PF03129 Anticodon binding domain LSO59_03000 PF04073 Aminoacyl-tRNA editing domain LSO59_03005 PF00873 AcrB/AcrD/AcrF family LSO59_03020 PF00072 Response regulator receiver domain LSO59_03025 PF00072 Response regulator receiver domain LSO59_03030 PF01584 CheW-like domain LSO59_03035 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LSO59_03035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LSO59_03040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_03040 PF01627 Hpt domain LSO59_03040 PF07194 P2 response regulator binding domain LSO59_03040 PF02895 Signal transducing histidine kinase, homodimeric domain LSO59_03040 PF01584 CheW-like domain LSO59_03055 PF01139 tRNA-splicing ligase RtcB LSO59_03060 PF00324 Amino acid permease LSO59_03065 PF08468 Methyltransferase small domain N-terminal LSO59_03065 PF05175 Methyltransferase small domain LSO59_03070 PF00860 Permease family LSO59_03075 PF00679 Elongation factor G C-terminus LSO59_03075 PF00009 Elongation factor Tu GTP binding domain LSO59_03075 PF03144 Elongation factor Tu domain 2 LSO59_03080 PF01741 Large-conductance mechanosensitive channel, MscL LSO59_03090 PF00639 PPIC-type PPIASE domain LSO59_03090 PF09312 SurA N-terminal domain LSO59_03095 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LSO59_03095 PF06827 Zinc finger found in FPG and IleRS LSO59_03095 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LSO59_03100 PF02245 Methylpurine-DNA glycosylase (MPG) LSO59_03105 PF07715 TonB-dependent Receptor Plug Domain LSO59_03105 PF00593 TonB dependent receptor LSO59_03110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO59_03125 PF10411 Disulfide bond isomerase protein N-terminus LSO59_03125 PF13098 Thioredoxin-like domain LSO59_03145 PF05992 SbmA/BacA-like family LSO59_03160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_03160 PF03466 LysR substrate binding domain LSO59_03200 PF02934 GatB/GatE catalytic domain LSO59_03200 PF02637 GatB domain LSO59_03205 PF01425 Amidase LSO59_03210 PF02686 Glu-tRNAGln amidotransferase C subunit LSO59_03220 PF04085 rod shape-determining protein MreC LSO59_03230 PF02545 Maf-like protein LSO59_03235 PF00575 S1 RNA binding domain LSO59_03235 PF10150 Ribonuclease E/G family LSO59_03245 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LSO59_03245 PF06974 Protein of unknown function (DUF1298) LSO59_03250 PF01507 Phosphoadenosine phosphosulfate reductase family LSO59_03260 PF01266 FAD dependent oxidoreductase LSO59_03260 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LSO59_03270 PF03795 YCII-related domain LSO59_03275 PF04279 Intracellular septation protein A LSO59_03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_03285 PF03466 LysR substrate binding domain LSO59_03290 PF00248 Aldo/keto reductase family LSO59_03295 PF01062 Bestrophin, RFP-TM, chloride channel LSO59_03300 PF04002 RadC-like JAB domain LSO59_03305 PF02441 Flavoprotein LSO59_03305 PF04127 DNA / pantothenate metabolism flavoprotein LSO59_03310 PF07361 Cytochrome b562 LSO59_03315 PF02556 Preprotein translocase subunit SecB LSO59_03320 PF00462 Glutaredoxin LSO59_03330 PF03193 RsgA GTPase LSO59_03335 PF00929 Exonuclease LSO59_03345 PF05681 Fumarate hydratase (Fumerase) LSO59_03345 PF05683 Fumarase C-terminus LSO59_03355 PF00857 Isochorismatase family LSO59_03360 PF01515 Phosphate acetyl/butaryl transferase LSO59_03360 PF07085 DRTGG domain LSO59_03365 PF00871 Acetokinase family LSO59_03370 PF00171 Aldehyde dehydrogenase family LSO59_03375 PF00561 alpha/beta hydrolase fold LSO59_03385 PF00933 Glycosyl hydrolase family 3 N terminal domain LSO59_03390 PF11818 C-terminal domain of tail specific protease (DUF3340) LSO59_03390 PF03572 Peptidase family S41 LSO59_03390 PF00595 PDZ domain LSO59_03390 PF17804 Tail specific protease N-terminal domain LSO59_03395 PF13439 Glycosyltransferase Family 4 LSO59_03395 PF00534 Glycosyl transferases group 1 LSO59_03400 PF01569 PAP2 superfamily LSO59_03405 PF04384 Iron-sulphur cluster assembly LSO59_03410 PF00334 Nucleoside diphosphate kinase LSO59_03415 PF04055 Radical SAM superfamily LSO59_03430 PF04551 GcpE protein LSO59_03435 PF03129 Anticodon binding domain LSO59_03435 PF13393 Histidyl-tRNA synthetase LSO59_03445 PF13360 PQQ-like domain LSO59_03450 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LSO59_03450 PF01926 50S ribosome-binding GTPase LSO59_03465 PF00550 Phosphopantetheine attachment site LSO59_03470 PF00550 Phosphopantetheine attachment site LSO59_03480 PF07977 FabA-like domain LSO59_03495 PF00221 Aromatic amino acid lyase LSO59_03515 PF01494 FAD binding domain LSO59_03525 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO59_03525 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO59_03540 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO59_03540 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO59_03560 PF07549 SecD/SecF GG Motif LSO59_03560 PF02355 Protein export membrane protein LSO59_03565 PF13721 SecD export protein N-terminal TM region LSO59_03565 PF07549 SecD/SecF GG Motif LSO59_03565 PF02355 Protein export membrane protein LSO59_03570 PF02699 Preprotein translocase subunit LSO59_03575 PF01702 Queuine tRNA-ribosyltransferase LSO59_03580 PF04011 LemA family LSO59_03590 PF02547 Queuosine biosynthesis protein LSO59_03655 PF03976 Polyphosphate kinase 2 (PPK2) LSO59_03665 PF02321 Outer membrane efflux protein LSO59_03670 PF13533 Biotin-lipoyl like LSO59_03675 PF00005 ABC transporter LSO59_03685 PF02690 Na+/Pi-cotransporter LSO59_03695 PF13089 Polyphosphate kinase N-terminal domain LSO59_03695 PF02503 Polyphosphate kinase middle domain LSO59_03695 PF13090 Polyphosphate kinase C-terminal domain 2 LSO59_03695 PF17941 Polyphosphate kinase C-terminal domain 1 LSO59_03730 PF00176 SNF2 family N-terminal domain LSO59_03730 PF00271 Helicase conserved C-terminal domain LSO59_03745 PF01555 DNA methylase LSO59_03780 PF02424 ApbE family LSO59_03790 PF00667 FAD binding domain LSO59_03790 PF00258 Flavodoxin LSO59_03790 PF00175 Oxidoreductase NAD-binding domain LSO59_03800 PF08521 Two-component sensor kinase N-terminal LSO59_03800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_03800 PF00512 His Kinase A (phospho-acceptor) domain LSO59_03805 PF00486 Transcriptional regulatory protein, C terminal LSO59_03805 PF00072 Response regulator receiver domain LSO59_03810 PF13640 2OG-Fe(II) oxygenase superfamily LSO59_03810 PF18331 PKHD-type hydroxylase C-terminal domain LSO59_03845 PF01545 Cation efflux family LSO59_03865 PF09278 MerR, DNA binding LSO59_03865 PF00376 MerR family regulatory protein LSO59_03870 PF00892 EamA-like transporter family LSO59_03875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LSO59_03875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LSO59_03880 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LSO59_03885 PF02233 NAD(P) transhydrogenase beta subunit LSO59_03900 PF00990 Diguanylate cyclase, GGDEF domain LSO59_03900 PF17158 Membrane-associated sensor, integral membrane domain LSO59_03905 PF07689 KaiB domain LSO59_03905 PF00512 His Kinase A (phospho-acceptor) domain LSO59_03905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_03910 PF13340 Putative transposase of IS4/5 family (DUF4096) LSO59_03915 PF03710 Glutamate-ammonia ligase adenylyltransferase LSO59_03915 PF08335 GlnD PII-uridylyltransferase LSO59_03920 PF01063 Amino-transferase class IV LSO59_03930 PF01522 Polysaccharide deacetylase LSO59_03935 PF13439 Glycosyltransferase Family 4 LSO59_03935 PF00534 Glycosyl transferases group 1 LSO59_03945 PF13439 Glycosyltransferase Family 4 LSO59_03945 PF00534 Glycosyl transferases group 1 LSO59_03955 PF09612 Bacterial protein of unknown function (HtrL_YibB) LSO59_03960 PF01501 Glycosyl transferase family 8 LSO59_03960 PF08437 Glycosyl transferase family 8 C-terminal LSO59_03975 PF01336 OB-fold nucleic acid binding domain LSO59_03975 PF00152 tRNA synthetases class II (D, K and N) LSO59_03975 PF02938 GAD domain LSO59_03985 PF00593 TonB dependent receptor LSO59_03985 PF07715 TonB-dependent Receptor Plug Domain LSO59_03990 PF07715 TonB-dependent Receptor Plug Domain LSO59_03990 PF00593 TonB dependent receptor LSO59_04020 PF06146 Phosphate-starvation-inducible E LSO59_04025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_04025 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO59_04025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_04025 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_04030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_04030 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO59_04030 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_04030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_04040 PF00512 His Kinase A (phospho-acceptor) domain LSO59_04040 PF00672 HAMP domain LSO59_04045 PF00486 Transcriptional regulatory protein, C terminal LSO59_04045 PF00072 Response regulator receiver domain LSO59_04050 PF04237 YjbR LSO59_04060 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LSO59_04070 PF03819 MazG nucleotide pyrophosphohydrolase domain LSO59_04080 PF12626 Polymerase A arginine-rich C-terminus LSO59_04080 PF01743 Poly A polymerase head domain LSO59_04080 PF12627 Probable RNA and SrmB- binding site of polymerase A LSO59_04085 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LSO59_04090 PF02548 Ketopantoate hydroxymethyltransferase LSO59_04095 PF02569 Pantoate-beta-alanine ligase LSO59_04100 PF03668 P-loop ATPase protein family LSO59_04105 PF00381 PTS HPr component phosphorylation site LSO59_04110 PF04751 Protein of unknown function (DUF615) LSO59_04115 PF00501 AMP-binding enzyme LSO59_04115 PF13193 AMP-binding enzyme C-terminal domain LSO59_04120 PF03129 Anticodon binding domain LSO59_04120 PF02824 TGS domain LSO59_04120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO59_04120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LSO59_04125 PF00707 Translation initiation factor IF-3, C-terminal domain LSO59_04125 PF05198 Translation initiation factor IF-3, N-terminal domain LSO59_04130 PF00043 Glutathione S-transferase, C-terminal domain LSO59_04130 PF02798 Glutathione S-transferase, N-terminal domain LSO59_04135 PF09335 SNARE associated Golgi protein LSO59_04150 PF01632 Ribosomal protein L35 LSO59_04155 PF00453 Ribosomal protein L20 LSO59_04175 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LSO59_04175 PF01409 tRNA synthetases class II core domain (F) LSO59_04180 PF03483 B3/4 domain LSO59_04180 PF03484 tRNA synthetase B5 domain LSO59_04180 PF03147 Ferredoxin-fold anticodon binding domain LSO59_04180 PF01588 Putative tRNA binding domain LSO59_04180 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LSO59_04185 PF00216 Bacterial DNA-binding protein LSO59_04195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LSO59_04195 PF07498 Rho termination factor, N-terminal domain LSO59_04195 PF07497 Rho termination factor, RNA-binding domain LSO59_04200 PF00085 Thioredoxin LSO59_04205 PF02541 Ppx/GppA phosphatase family LSO59_04210 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LSO59_04215 PF01171 PP-loop family LSO59_04215 PF09179 TilS substrate binding domain LSO59_04215 PF11734 TilS substrate C-terminal domain LSO59_04220 PF14748 Pyrroline-5-carboxylate reductase dimerisation LSO59_04220 PF03807 NADP oxidoreductase coenzyme F420-dependent LSO59_04225 PF02325 YGGT family LSO59_04230 PF01367 5'-3' exonuclease, C-terminal SAM fold LSO59_04230 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LSO59_04230 PF00476 DNA polymerase family A LSO59_04230 PF01612 3'-5' exonuclease LSO59_04250 PF00437 Type II/IV secretion system protein LSO59_04255 PF01047 MarR family LSO59_04260 PF00795 Carbon-nitrogen hydrolase LSO59_04305 PF00309 Sigma-54 factor, Activator interacting domain (AID) LSO59_04305 PF04963 Sigma-54 factor, core binding domain LSO59_04305 PF04552 Sigma-54, DNA binding domain LSO59_04310 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LSO59_04315 PF01722 BolA-like protein LSO59_04320 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LSO59_04325 PF01634 ATP phosphoribosyltransferase LSO59_04335 PF00815 Histidinol dehydrogenase LSO59_04340 PF00155 Aminotransferase class I and II LSO59_04345 PF00425 chorismate binding enzyme LSO59_04345 PF04715 Anthranilate synthase component I, N terminal region LSO59_04395 PF00293 NUDIX domain LSO59_04400 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_04405 PF00814 Glycoprotease family LSO59_04410 PF02673 Bacitracin resistance protein BacA LSO59_04415 PF04445 Putative SAM-dependent methyltransferase LSO59_04425 PF00756 Putative esterase LSO59_04430 PF05987 Bacterial protein of unknown function (DUF898) LSO59_04445 PF00834 Ribulose-phosphate 3 epimerase family LSO59_04465 PF00893 Small Multidrug Resistance protein LSO59_04470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LSO59_04470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LSO59_04475 PF00962 Adenosine/AMP deaminase LSO59_04480 PF04966 Carbohydrate-selective porin, OprB family LSO59_04520 PF01381 Helix-turn-helix LSO59_04530 PF14864 Alkyl sulfatase C-terminal LSO59_04530 PF00753 Metallo-beta-lactamase superfamily LSO59_04530 PF14863 Alkyl sulfatase dimerisation LSO59_04540 PF00271 Helicase conserved C-terminal domain LSO59_04540 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LSO59_04540 PF04851 Type III restriction enzyme, res subunit LSO59_04540 PF08463 EcoEI R protein C-terminal LSO59_04545 PF12161 HsdM N-terminal domain LSO59_04545 PF02384 N-6 DNA Methylase LSO59_04550 PF01420 Type I restriction modification DNA specificity domain LSO59_04560 PF00268 Ribonucleotide reductase, small chain LSO59_04570 PF03477 ATP cone domain LSO59_04570 PF02867 Ribonucleotide reductase, barrel domain LSO59_04570 PF00317 Ribonucleotide reductase, all-alpha domain LSO59_04575 PF00072 Response regulator receiver domain LSO59_04575 PF00486 Transcriptional regulatory protein, C terminal LSO59_04580 PF00512 His Kinase A (phospho-acceptor) domain LSO59_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_04580 PF00672 HAMP domain LSO59_04590 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LSO59_04595 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LSO59_04600 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LSO59_04600 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LSO59_04610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LSO59_04610 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LSO59_04610 PF10531 SLBB domain LSO59_04615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LSO59_04615 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LSO59_04615 PF00384 Molybdopterin oxidoreductase LSO59_04620 PF00146 NADH dehydrogenase LSO59_04625 PF12838 4Fe-4S dicluster domain LSO59_04630 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LSO59_04635 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LSO59_04640 PF00361 Proton-conducting membrane transporter LSO59_04640 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LSO59_04645 PF00361 Proton-conducting membrane transporter LSO59_04650 PF00361 Proton-conducting membrane transporter LSO59_04665 PF07715 TonB-dependent Receptor Plug Domain LSO59_04665 PF00593 TonB dependent receptor LSO59_04670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_04670 PF03466 LysR substrate binding domain LSO59_04675 PF00970 Oxidoreductase FAD-binding domain LSO59_04675 PF00175 Oxidoreductase NAD-binding domain LSO59_04690 PF05552 Conserved TM helix LSO59_04705 PF00291 Pyridoxal-phosphate dependent enzyme LSO59_04710 PF13533 Biotin-lipoyl like LSO59_04725 PF08241 Methyltransferase domain LSO59_04730 PF01810 LysE type translocator LSO59_04745 PF01979 Amidohydrolase family LSO59_04750 PF00860 Permease family LSO59_04755 PF03171 2OG-Fe(II) oxygenase superfamily LSO59_04755 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LSO59_04765 PF16123 Hydroxyacylglutathione hydrolase C-terminus LSO59_04765 PF00753 Metallo-beta-lactamase superfamily LSO59_04770 PF09334 tRNA synthetases class I (M) LSO59_04770 PF01588 Putative tRNA binding domain LSO59_04780 PF10609 NUBPL iron-transfer P-loop NTPase LSO59_04785 PF01048 Phosphorylase superfamily LSO59_04800 PF00692 dUTPase LSO59_04845 PF13005 zinc-finger binding domain of transposase IS66 LSO59_04845 PF13817 IS66 C-terminal element LSO59_04845 PF03050 Transposase IS66 family LSO59_04845 PF13007 Transposase C of IS166 homeodomain LSO59_04860 PF00551 Formyl transferase LSO59_04865 PF02769 AIR synthase related protein, C-terminal domain LSO59_04865 PF00586 AIR synthase related protein, N-terminal domain LSO59_04870 PF01594 AI-2E family transporter LSO59_04875 PF00308 Bacterial dnaA protein LSO59_04875 PF08299 Bacterial dnaA protein helix-turn-helix LSO59_04875 PF11638 DnaA N-terminal domain LSO59_04890 PF00764 Arginosuccinate synthase LSO59_04895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_04895 PF03466 LysR substrate binding domain LSO59_04905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO59_04905 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_04915 PF13356 Arm DNA-binding domain LSO59_04915 PF00589 Phage integrase family LSO59_05000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_05000 PF00529 HlyD membrane-fusion protein of T1SS LSO59_05005 PF00873 AcrB/AcrD/AcrF family LSO59_05025 PF07690 Major Facilitator Superfamily LSO59_05040 PF01545 Cation efflux family LSO59_05040 PF16916 Dimerisation domain of Zinc Transporter LSO59_05070 PF00296 Luciferase-like monooxygenase LSO59_05075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LSO59_05080 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_05085 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_05085 PF12911 N-terminal TM domain of oligopeptide transport permease C LSO59_05090 PF00005 ABC transporter LSO59_05090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LSO59_05095 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO59_05095 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_05095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_05105 PF00664 ABC transporter transmembrane region LSO59_05105 PF00005 ABC transporter LSO59_05110 PF00664 ABC transporter transmembrane region LSO59_05110 PF00005 ABC transporter LSO59_05115 PF00296 Luciferase-like monooxygenase LSO59_05120 PF00158 Sigma-54 interaction domain LSO59_05125 PF00902 Sec-independent protein translocase protein (TatC) LSO59_05130 PF02416 mttA/Hcf106 family LSO59_05135 PF02416 mttA/Hcf106 family LSO59_05140 PF00005 ABC transporter LSO59_05145 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_05150 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_05155 PF00872 Transposase, Mutator family LSO59_05160 PF09084 NMT1/THI5 like LSO59_05165 PF00296 Luciferase-like monooxygenase LSO59_05170 PF03544 Gram-negative bacterial TonB protein C-terminal LSO59_05175 PF01618 MotA/TolQ/ExbB proton channel family LSO59_05180 PF02472 Biopolymer transport protein ExbD/TolR LSO59_05185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LSO59_05195 PF07715 TonB-dependent Receptor Plug Domain LSO59_05195 PF00593 TonB dependent receptor LSO59_05200 PF00296 Luciferase-like monooxygenase LSO59_05210 PF03466 LysR substrate binding domain LSO59_05210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_05215 PF12697 Alpha/beta hydrolase family LSO59_05225 PF13737 Transposase DDE domain LSO59_05240 PF02515 CoA-transferase family III LSO59_05250 PF03328 HpcH/HpaI aldolase/citrate lyase family LSO59_05255 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_05255 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_05255 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_05260 PF03466 LysR substrate binding domain LSO59_05265 PF00083 Sugar (and other) transporter LSO59_05285 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_05290 PF00005 ABC transporter LSO59_05290 PF03459 TOBE domain LSO59_05295 PF02803 Thiolase, C-terminal domain LSO59_05295 PF00108 Thiolase, N-terminal domain LSO59_05300 PF02667 Short chain fatty acid transporter LSO59_05305 PF01144 Coenzyme A transferase LSO59_05310 PF01144 Coenzyme A transferase LSO59_05315 PF03466 LysR substrate binding domain LSO59_05315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_05320 PF13737 Transposase DDE domain LSO59_05340 PF01126 Heme oxygenase LSO59_05345 PF08281 Sigma-70, region 4 LSO59_05345 PF04542 Sigma-70 region 2 LSO59_05355 PF00593 TonB dependent receptor LSO59_05355 PF07715 TonB-dependent Receptor Plug Domain LSO59_05365 PF03573 outer membrane porin, OprD family LSO59_05370 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_05370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_05370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_05380 PF00171 Aldehyde dehydrogenase family LSO59_05385 PF00378 Enoyl-CoA hydratase/isomerase LSO59_05390 PF07690 Major Facilitator Superfamily LSO59_05400 PF00440 Bacterial regulatory proteins, tetR family LSO59_05400 PF17932 Tetracyclin repressor-like, C-terminal domain LSO59_05410 PF00106 short chain dehydrogenase LSO59_05415 PF00743 Flavin-binding monooxygenase-like LSO59_05420 PF04072 Leucine carboxyl methyltransferase LSO59_05425 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO59_05425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO59_05425 PF11890 Domain of unknown function (DUF3410) LSO59_05430 PF00152 tRNA synthetases class II (D, K and N) LSO59_05440 PF18073 Rubredoxin metal binding domain LSO59_05445 PF00324 Amino acid permease LSO59_05455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LSO59_05455 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LSO59_05460 PF01678 Diaminopimelate epimerase LSO59_05465 PF14581 SseB protein C-terminal domain LSO59_05465 PF07179 SseB protein N-terminal domain LSO59_05470 PF00561 alpha/beta hydrolase fold LSO59_05475 PF02899 Phage integrase, N-terminal SAM-like domain LSO59_05475 PF00589 Phage integrase family LSO59_05480 PF01012 Electron transfer flavoprotein domain LSO59_05485 PF01012 Electron transfer flavoprotein domain LSO59_05485 PF00766 Electron transfer flavoprotein FAD-binding domain LSO59_05490 PF03989 DNA gyrase C-terminal domain, beta-propeller LSO59_05490 PF00521 DNA gyrase/topoisomerase IV, subunit A LSO59_05495 PF00376 MerR family regulatory protein LSO59_05495 PF09278 MerR, DNA binding LSO59_05505 PF00561 alpha/beta hydrolase fold LSO59_05550 PF03695 Uncharacterised protein family (UPF0149) LSO59_05555 PF05195 Aminopeptidase P, N-terminal domain LSO59_05555 PF00557 Metallopeptidase family M24 LSO59_05560 PF01494 FAD binding domain LSO59_05565 PF01494 FAD binding domain LSO59_05575 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LSO59_05580 PF04348 LppC putative lipoprotein LSO59_05585 PF02021 Uncharacterised protein family UPF0102 LSO59_05590 PF04972 BON domain LSO59_05600 PF00293 NUDIX domain LSO59_05600 PF09297 NADH pyrophosphatase zinc ribbon domain LSO59_05610 PF00929 Exonuclease LSO59_05615 PF01476 LysM domain LSO59_05615 PF01464 Transglycosylase SLT domain LSO59_05615 PF01476 LysM domain LSO59_05615 PF01464 Transglycosylase SLT domain LSO59_05620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LSO59_05625 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_05630 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_05630 PF12911 N-terminal TM domain of oligopeptide transport permease C LSO59_05635 PF00005 ABC transporter LSO59_05635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LSO59_05640 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO59_05640 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_05655 PF00576 HIUase/Transthyretin family LSO59_05660 PF03971 Monomeric isocitrate dehydrogenase LSO59_05665 PF00849 RNA pseudouridylate synthase LSO59_05670 PF00180 Isocitrate/isopropylmalate dehydrogenase LSO59_05675 PF00375 Sodium:dicarboxylate symporter family LSO59_05680 PF02567 Phenazine biosynthesis-like protein LSO59_05685 PF00654 Voltage gated chloride channel LSO59_05690 PF00675 Insulinase (Peptidase family M16) LSO59_05690 PF05193 Peptidase M16 inactive domain LSO59_05745 PF01037 Lrp/AsnC ligand binding domain LSO59_05765 PF07729 FCD domain LSO59_05765 PF00392 Bacterial regulatory proteins, gntR family LSO59_05775 PF00285 Citrate synthase, C-terminal domain LSO59_05780 PF00330 Aconitase family (aconitate hydratase) LSO59_05780 PF00694 Aconitase C-terminal domain LSO59_05795 PF00892 EamA-like transporter family LSO59_05800 PF00120 Glutamine synthetase, catalytic domain LSO59_05800 PF03951 Glutamine synthetase, beta-Grasp domain LSO59_05815 PF00155 Aminotransferase class I and II LSO59_05825 PF00444 Ribosomal protein L36 LSO59_05830 PF00990 Diguanylate cyclase, GGDEF domain LSO59_05830 PF00072 Response regulator receiver domain LSO59_05840 PF00271 Helicase conserved C-terminal domain LSO59_05840 PF04851 Type III restriction enzyme, res subunit LSO59_05840 PF02151 UvrB/uvrC motif LSO59_05840 PF12344 Ultra-violet resistance protein B LSO59_05840 PF17757 UvrB interaction domain LSO59_05845 PF08212 Lipocalin-like domain LSO59_05850 PF00892 EamA-like transporter family LSO59_05855 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LSO59_05855 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LSO59_05870 PF01018 GTP1/OBG LSO59_05870 PF01926 50S ribosome-binding GTPase LSO59_05875 PF00696 Amino acid kinase family LSO59_05875 PF01472 PUA domain LSO59_05885 PF07759 Protein of unknown function (DUF1615) LSO59_05925 PF09588 YqaJ-like viral recombinase domain LSO59_06000 PF00145 C-5 cytosine-specific DNA methylase LSO59_06050 PF00872 Transposase, Mutator family LSO59_06170 PF00182 Chitinase class I LSO59_06185 PF00589 Phage integrase family LSO59_06190 PF01207 Dihydrouridine synthase (Dus) LSO59_06200 PF03060 Nitronate monooxygenase LSO59_06205 PF13520 Amino acid permease LSO59_06210 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LSO59_06215 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LSO59_06220 PF07499 RuvA, C-terminal domain LSO59_06220 PF01330 RuvA N terminal domain LSO59_06245 PF02566 OsmC-like protein LSO59_06250 PF06826 Predicted Permease Membrane Region LSO59_06250 PF02080 TrkA-C domain LSO59_06255 PF00155 Aminotransferase class I and II LSO59_06260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_06260 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_06260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_06275 PF00800 Prephenate dehydratase LSO59_06275 PF01842 ACT domain LSO59_06275 PF01817 Chorismate mutase type II LSO59_06280 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LSO59_06290 PF01546 Peptidase family M20/M25/M40 LSO59_06290 PF07687 Peptidase dimerisation domain LSO59_06295 PF03883 Peroxide stress protein YaaA LSO59_06315 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_06315 PF13192 Thioredoxin domain LSO59_06335 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO59_06335 PF00578 AhpC/TSA family LSO59_06340 PF00270 DEAD/DEAH box helicase LSO59_06340 PF11898 Domain of unknown function (DUF3418) LSO59_06340 PF00271 Helicase conserved C-terminal domain LSO59_06340 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LSO59_06340 PF04408 Helicase associated domain (HA2) LSO59_06345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LSO59_06345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LSO59_06350 PF00384 Molybdopterin oxidoreductase LSO59_06355 PF02634 FdhD/NarQ family LSO59_06365 PF00324 Amino acid permease LSO59_06375 PF00929 Exonuclease LSO59_06380 PF01979 Amidohydrolase family LSO59_06385 PF00563 EAL domain LSO59_06385 PF00360 Phytochrome region LSO59_06385 PF01590 GAF domain LSO59_06385 PF00990 Diguanylate cyclase, GGDEF domain LSO59_06405 PF00588 SpoU rRNA Methylase family LSO59_06405 PF08032 RNA 2'-O ribose methyltransferase substrate binding LSO59_06410 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LSO59_06420 PF00691 OmpA family LSO59_06425 PF07676 WD40-like Beta Propeller Repeat LSO59_06425 PF04052 TolB amino-terminal domain LSO59_06435 PF02472 Biopolymer transport protein ExbD/TolR LSO59_06440 PF01618 MotA/TolQ/ExbB proton channel family LSO59_06445 PF03061 Thioesterase superfamily LSO59_06450 PF05496 Holliday junction DNA helicase RuvB P-loop domain LSO59_06450 PF17864 RuvB AAA lid domain LSO59_06450 PF05491 RuvB C-terminal winged helix domain LSO59_06455 PF01330 RuvA N terminal domain LSO59_06455 PF07499 RuvA, C-terminal domain LSO59_06460 PF01966 HD domain LSO59_06465 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LSO59_06470 PF00005 ABC transporter LSO59_06475 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_06480 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LSO59_06485 PF13360 PQQ-like domain LSO59_06490 PF09905 DNA-binding protein VF530 LSO59_06510 PF00691 OmpA family LSO59_06510 PF01389 OmpA-like transmembrane domain LSO59_06525 PF02321 Outer membrane efflux protein LSO59_06530 PF00005 ABC transporter LSO59_06530 PF00664 ABC transporter transmembrane region LSO59_06545 PF01695 IstB-like ATP binding protein LSO59_06550 PF00665 Integrase core domain LSO59_06550 PF02796 Helix-turn-helix domain of resolvase LSO59_06560 PF12419 SNF2 Helicase protein LSO59_06560 PF00271 Helicase conserved C-terminal domain LSO59_06560 PF00176 SNF2 family N-terminal domain LSO59_06565 PF07804 HipA-like C-terminal domain LSO59_06565 PF13657 HipA N-terminal domain LSO59_06590 PF07120 Protein of unknown function (DUF1376) LSO59_06620 PF09190 DALR domain LSO59_06620 PF01406 tRNA synthetases class I (C) catalytic domain LSO59_06625 PF00571 CBS domain LSO59_06625 PF01380 SIS domain LSO59_06640 PF03968 OstA-like protein LSO59_06645 PF00005 ABC transporter LSO59_06645 PF12399 Branched-chain amino acid ATP-binding cassette transporter LSO59_06660 PF02321 Outer membrane efflux protein LSO59_06665 PF00664 ABC transporter transmembrane region LSO59_06665 PF00005 ABC transporter LSO59_06665 PF03412 Peptidase C39 family LSO59_06675 PF01205 Uncharacterized protein family UPF0029 LSO59_06680 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_06690 PF01596 O-methyltransferase LSO59_06700 PF00037 4Fe-4S binding domain LSO59_06700 PF11953 Domain of unknown function (DUF3470) LSO59_06710 PF01624 MutS domain I LSO59_06710 PF00488 MutS domain V LSO59_06710 PF05190 MutS family domain IV LSO59_06710 PF05192 MutS domain III LSO59_06710 PF05188 MutS domain II LSO59_06720 PF07963 Prokaryotic N-terminal methylation motif LSO59_06720 PF14245 Type IV pilin PilA LSO59_06755 PF07963 Prokaryotic N-terminal methylation motif LSO59_06755 PF00114 Pilin (bacterial filament) LSO59_06775 PF13005 zinc-finger binding domain of transposase IS66 LSO59_06775 PF13007 Transposase C of IS166 homeodomain LSO59_06775 PF13817 IS66 C-terminal element LSO59_06775 PF03050 Transposase IS66 family LSO59_06820 PF00589 Phage integrase family LSO59_06830 PF11992 Domain of unknown function (DUF3488) LSO59_06830 PF13559 Domain of unknown function (DUF4129) LSO59_06830 PF01841 Transglutaminase-like superfamily LSO59_06835 PF04055 Radical SAM superfamily LSO59_06840 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO59_06840 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_06845 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LSO59_06860 PF00557 Metallopeptidase family M24 LSO59_06865 PF00318 Ribosomal protein S2 LSO59_06870 PF00889 Elongation factor TS LSO59_06900 PF03330 Lytic transglycolase LSO59_06900 PF05036 Sporulation related domain LSO59_06905 PF13406 Transglycosylase SLT domain LSO59_06910 PF01098 Cell cycle protein LSO59_06920 PF14489 QueF-like protein LSO59_06920 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LSO59_06925 PF01061 ABC-2 type transporter LSO59_06930 PF00005 ABC transporter LSO59_06940 PF13356 Arm DNA-binding domain LSO59_06940 PF00589 Phage integrase family LSO59_07020 PF09313 Domain of unknown function (DUF1971) LSO59_07020 PF03848 Tellurite resistance protein TehB LSO59_07030 PF12161 HsdM N-terminal domain LSO59_07030 PF02384 N-6 DNA Methylase LSO59_07050 PF12008 Type I restriction and modification enzyme - subunit R C terminal LSO59_07050 PF18766 SWI2/SNF2 ATPase LSO59_07050 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LSO59_07055 PF13086 AAA domain LSO59_07055 PF13087 AAA domain LSO59_07055 PF13195 Protein of unknown function (DUF4011) LSO59_07055 PF13086 AAA domain LSO59_07055 PF13087 AAA domain LSO59_07055 PF13195 Protein of unknown function (DUF4011) LSO59_07060 PF07728 AAA domain (dynein-related subfamily) LSO59_07060 PF12102 Domain of unknown function (DUF3578) LSO59_07075 PF02661 Fic/DOC family LSO59_07075 PF13784 Fic/DOC family N-terminal LSO59_07080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_07100 PF00005 ABC transporter LSO59_07110 PF04143 Sulphur transport LSO59_07120 PF00753 Metallo-beta-lactamase superfamily LSO59_07125 PF01925 Sulfite exporter TauE/SafE LSO59_07130 PF00581 Rhodanese-like domain LSO59_07145 PF03960 ArsC family LSO59_07160 PF01022 Bacterial regulatory protein, arsR family LSO59_07170 PF01758 Sodium Bile acid symporter family LSO59_07175 PF03358 NADPH-dependent FMN reductase LSO59_07190 PF02872 5'-nucleotidase, C-terminal domain LSO59_07190 PF00149 Calcineurin-like phosphoesterase LSO59_07200 PF00245 Alkaline phosphatase LSO59_07205 PF00245 Alkaline phosphatase LSO59_07235 PF02583 Metal-sensitive transcriptional repressor LSO59_07250 PF09828 Chromate resistance exported protein LSO59_07280 PF00561 alpha/beta hydrolase fold LSO59_07300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_07300 PF00512 His Kinase A (phospho-acceptor) domain LSO59_07305 PF00486 Transcriptional regulatory protein, C terminal LSO59_07305 PF00072 Response regulator receiver domain LSO59_07310 PF08019 Phosphoethanolamine transferase EptA/EptB LSO59_07310 PF00884 Sulfatase LSO59_07320 PF01569 PAP2 superfamily LSO59_07330 PF00582 Universal stress protein family LSO59_07335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO59_07340 PF07943 Penicillin-binding protein 5, C-terminal domain LSO59_07340 PF00768 D-alanyl-D-alanine carboxypeptidase LSO59_07350 PF02581 Thiamine monophosphate synthase LSO59_07355 PF00202 Aminotransferase class-III LSO59_07360 PF03928 Haem-degrading LSO59_07365 PF00849 RNA pseudouridylate synthase LSO59_07370 PF00271 Helicase conserved C-terminal domain LSO59_07370 PF12137 RNA polymerase recycling family C-terminal LSO59_07370 PF00176 SNF2 family N-terminal domain LSO59_07370 PF18339 RapA N-terminal Tudor like domain 1 LSO59_07370 PF18337 RapA N-terminal Tudor like domain LSO59_07375 PF00210 Ferritin-like domain LSO59_07380 PF00440 Bacterial regulatory proteins, tetR family LSO59_07385 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO59_07385 PF00970 Oxidoreductase FAD-binding domain LSO59_07385 PF00175 Oxidoreductase NAD-binding domain LSO59_07390 PF00487 Fatty acid desaturase LSO59_07400 PF00202 Aminotransferase class-III LSO59_07405 PF00282 Pyridoxal-dependent decarboxylase conserved domain LSO59_07410 PF12849 PBP superfamily domain LSO59_07415 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_07420 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_07425 PF00005 ABC transporter LSO59_07430 PF08496 Peptidase family S49 N-terminal LSO59_07430 PF01343 Peptidase family S49 LSO59_07440 PF00206 Lyase LSO59_07440 PF08328 Adenylosuccinate lyase C-terminal LSO59_07445 PF04356 Protein of unknown function (DUF489) LSO59_07455 PF00293 NUDIX domain LSO59_07460 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_07465 PF00768 D-alanyl-D-alanine carboxypeptidase LSO59_07465 PF07943 Penicillin-binding protein 5, C-terminal domain LSO59_07480 PF01975 Survival protein SurE LSO59_07485 PF01551 Peptidase family M23 LSO59_07485 PF01476 LysM domain LSO59_07490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_07490 PF03466 LysR substrate binding domain LSO59_07495 PF00202 Aminotransferase class-III LSO59_07500 PF00462 Glutaredoxin LSO59_07505 PF01743 Poly A polymerase head domain LSO59_07505 PF12627 Probable RNA and SrmB- binding site of polymerase A LSO59_07510 PF00390 Malic enzyme, N-terminal domain LSO59_07510 PF03949 Malic enzyme, NAD binding domain LSO59_07510 PF01515 Phosphate acetyl/butaryl transferase LSO59_07515 PF00563 EAL domain LSO59_07515 PF00990 Diguanylate cyclase, GGDEF domain LSO59_07515 PF03707 Bacterial signalling protein N terminal repeat LSO59_07520 PF04452 RNA methyltransferase LSO59_07525 PF02219 Methylenetetrahydrofolate reductase LSO59_07530 PF05221 S-adenosyl-L-homocysteine hydrolase LSO59_07530 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LSO59_07545 PF06100 MCRA family LSO59_07550 PF08946 Osmosensory transporter coiled coil LSO59_07550 PF00083 Sugar (and other) transporter LSO59_07555 PF05230 MASE2 domain LSO59_07555 PF00990 Diguanylate cyclase, GGDEF domain LSO59_07565 PF09317 Domain of unknown function (DUF1974) LSO59_07565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_07565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_07565 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_07570 PF02390 Putative methyltransferase LSO59_07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_07575 PF05231 MASE1 LSO59_07575 PF07730 Histidine kinase LSO59_07580 PF00196 Bacterial regulatory proteins, luxR family LSO59_07580 PF00072 Response regulator receiver domain LSO59_07585 PF03895 YadA-like membrane anchor domain LSO59_07585 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO59_07585 PF05658 Head domain of trimeric autotransporter adhesin LSO59_07590 PF02798 Glutathione S-transferase, N-terminal domain LSO59_07590 PF14497 Glutathione S-transferase, C-terminal domain LSO59_07600 PF05690 Thiazole biosynthesis protein ThiG LSO59_07615 PF00140 Sigma-70 factor, region 1.2 LSO59_07615 PF04542 Sigma-70 region 2 LSO59_07615 PF04545 Sigma-70, region 4 LSO59_07625 PF00313 'Cold-shock' DNA-binding domain LSO59_07630 PF00270 DEAD/DEAH box helicase LSO59_07630 PF00271 Helicase conserved C-terminal domain LSO59_07640 PF00881 Nitroreductase family LSO59_07645 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LSO59_07645 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LSO59_07665 PF01180 Dihydroorotate dehydrogenase LSO59_07670 PF02674 Colicin V production protein LSO59_07675 PF00156 Phosphoribosyl transferase domain LSO59_07690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LSO59_07690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO59_07695 PF01435 Peptidase family M48 LSO59_07695 PF13181 Tetratricopeptide repeat LSO59_07705 PF09424 Yqey-like protein LSO59_07710 PF01165 Ribosomal protein S21 LSO59_07715 PF00814 Glycoprotease family LSO59_07725 PF01230 HIT domain LSO59_07735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO59_07735 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO59_07745 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO59_07750 PF02575 YbaB/EbfC DNA-binding family LSO59_07755 PF02132 RecR protein LSO59_07755 PF13662 Toprim domain LSO59_07760 PF01612 3'-5' exonuclease LSO59_07760 PF00570 HRDC domain LSO59_07765 PF05166 YcgL domain LSO59_07775 PF17862 AAA+ lid domain LSO59_07775 PF01434 Peptidase family M41 LSO59_07775 PF00004 ATPase family associated with various cellular activities (AAA) LSO59_07785 PF01281 Ribosomal protein L9, N-terminal domain LSO59_07785 PF03948 Ribosomal protein L9, C-terminal domain LSO59_07790 PF01084 Ribosomal protein S18 LSO59_07795 PF01250 Ribosomal protein S6 LSO59_07800 PF01040 UbiA prenyltransferase family LSO59_07805 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LSO59_07810 PF00510 Cytochrome c oxidase subunit III LSO59_07815 PF00115 Cytochrome C and Quinol oxidase polypeptide I LSO59_07820 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LSO59_07820 PF06481 COX Aromatic Rich Motif LSO59_07830 PF02896 PEP-utilising enzyme, TIM barrel domain LSO59_07830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LSO59_07830 PF00391 PEP-utilising enzyme, mobile domain LSO59_07835 PF03618 Kinase/pyrophosphorylase LSO59_07840 PF00296 Luciferase-like monooxygenase LSO59_07850 PF03462 PCRF domain LSO59_07850 PF00472 RF-1 domain LSO59_07855 PF13847 Methyltransferase domain LSO59_07855 PF17827 PrmC N-terminal domain LSO59_07860 PF12833 Helix-turn-helix domain LSO59_07865 PF00106 short chain dehydrogenase LSO59_07870 PF00501 AMP-binding enzyme LSO59_07870 PF13193 AMP-binding enzyme C-terminal domain LSO59_07875 PF01613 Flavin reductase like domain LSO59_07880 PF05175 Methyltransferase small domain LSO59_07885 PF01264 Chorismate synthase LSO59_07910 PF03891 Domain of unknown function (DUF333) LSO59_07915 PF02673 Bacitracin resistance protein BacA LSO59_07940 PF12833 Helix-turn-helix domain LSO59_07940 PF12852 Cupin LSO59_07945 PF00487 Fatty acid desaturase LSO59_07950 PF00583 Acetyltransferase (GNAT) family LSO59_07955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_07955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_07955 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_07960 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_07960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_07960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_07965 PF03109 ABC1 family LSO59_07975 PF00899 ThiF family LSO59_07980 PF03109 ABC1 family LSO59_07985 PF02152 Dihydroneopterin aldolase LSO59_07995 PF03814 Potassium-transporting ATPase A subunit LSO59_08005 PF02669 K+-transporting ATPase, c chain LSO59_08010 PF13492 GAF domain LSO59_08010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_08010 PF13493 Domain of unknown function (DUF4118) LSO59_08010 PF02702 Osmosensitive K+ channel His kinase sensor domain LSO59_08010 PF00512 His Kinase A (phospho-acceptor) domain LSO59_08015 PF00486 Transcriptional regulatory protein, C terminal LSO59_08015 PF00072 Response regulator receiver domain LSO59_08025 PF03232 Ubiquinone biosynthesis protein COQ7 LSO59_08030 PF07690 Major Facilitator Superfamily LSO59_08035 PF01103 Surface antigen LSO59_08035 PF07244 Surface antigen variable number repeat LSO59_08035 PF17243 POTRA domain TamA domain 1 LSO59_08060 PF06434 Aconitate hydratase 2 N-terminus LSO59_08060 PF11791 Aconitate B N-terminal domain LSO59_08060 PF00330 Aconitase family (aconitate hydratase) LSO59_08070 PF01037 Lrp/AsnC ligand binding domain LSO59_08090 PF00072 Response regulator receiver domain LSO59_08090 PF00158 Sigma-54 interaction domain LSO59_08090 PF02954 Bacterial regulatory protein, Fis family LSO59_08095 PF00989 PAS fold LSO59_08095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_08095 PF00512 His Kinase A (phospho-acceptor) domain LSO59_08100 PF04055 Radical SAM superfamily LSO59_08100 PF18693 TRAM domain LSO59_08100 PF00919 Uncharacterized protein family UPF0004 LSO59_08105 PF00696 Amino acid kinase family LSO59_08110 PF01765 Ribosome recycling factor LSO59_08115 PF01255 Putative undecaprenyl diphosphate synthase LSO59_08125 PF13288 DXP reductoisomerase C-terminal domain LSO59_08125 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LSO59_08125 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LSO59_08130 PF13180 PDZ domain LSO59_08130 PF17820 PDZ domain LSO59_08130 PF02163 Peptidase family M50 LSO59_08135 PF07244 Surface antigen variable number repeat LSO59_08135 PF01103 Surface antigen LSO59_08145 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_08145 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LSO59_08150 PF07977 FabA-like domain LSO59_08155 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LSO59_08155 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_08170 PF02631 RecX family LSO59_08175 PF00154 recA bacterial DNA recombination protein LSO59_08180 PF01479 S4 domain LSO59_08185 PF13419 Haloacid dehalogenase-like hydrolase LSO59_08190 PF00459 Inositol monophosphatase family LSO59_08200 PF01757 Acyltransferase family LSO59_08205 PF01649 Ribosomal protein S20 LSO59_08210 PF13460 NAD(P)H-binding LSO59_08215 PF03737 Aldolase/RraA LSO59_08230 PF01645 Conserved region in glutamate synthase LSO59_08235 PF08007 Cupin superfamily protein LSO59_08240 PF03575 Peptidase family S51 LSO59_08245 PF02545 Maf-like protein LSO59_08255 PF00162 Phosphoglycerate kinase LSO59_08265 PF01116 Fructose-bisphosphate aldolase class-II LSO59_08275 PF00881 Nitroreductase family LSO59_08280 PF00149 Calcineurin-like phosphoesterase LSO59_08285 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LSO59_08290 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LSO59_08290 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO59_08305 PF09992 Phosphodiester glycosidase LSO59_08315 PF05958 tRNA (Uracil-5-)-methyltransferase LSO59_08320 PF04229 GrpB protein LSO59_08325 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LSO59_08325 PF00171 Aldehyde dehydrogenase family LSO59_08325 PF01619 Proline dehydrogenase LSO59_08325 PF14850 DNA-binding domain of Proline dehydrogenase LSO59_08330 PF01037 Lrp/AsnC ligand binding domain LSO59_08335 PF00474 Sodium:solute symporter family LSO59_08340 PF02146 Sir2 family LSO59_08345 PF00083 Sugar (and other) transporter LSO59_08350 PF00561 alpha/beta hydrolase fold LSO59_08360 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_08360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LSO59_08380 PF00117 Glutamine amidotransferase class-I LSO59_08380 PF06418 CTP synthase N-terminus LSO59_08385 PF00793 DAHP synthetase I family LSO59_08390 PF03952 Enolase, N-terminal domain LSO59_08390 PF00113 Enolase, C-terminal TIM barrel domain LSO59_08395 PF04977 Septum formation initiator LSO59_08400 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LSO59_08405 PF01266 FAD dependent oxidoreductase LSO59_08415 PF00005 ABC transporter LSO59_08420 PF00486 Transcriptional regulatory protein, C terminal LSO59_08420 PF00072 Response regulator receiver domain LSO59_08425 PF07690 Major Facilitator Superfamily LSO59_08430 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_08430 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO59_08430 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO59_08430 PF18267 Rubredoxin NAD+ reductase C-terminal domain LSO59_08430 PF04324 BFD-like [2Fe-2S] binding domain LSO59_08435 PF04324 BFD-like [2Fe-2S] binding domain LSO59_08435 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LSO59_08435 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LSO59_08435 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_08435 PF18267 Rubredoxin NAD+ reductase C-terminal domain LSO59_08440 PF04324 BFD-like [2Fe-2S] binding domain LSO59_08440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LSO59_08440 PF00384 Molybdopterin oxidoreductase LSO59_08440 PF01568 Molydopterin dinucleotide binding domain LSO59_08445 PF12804 MobA-like NTP transferase domain LSO59_08450 PF04055 Radical SAM superfamily LSO59_08450 PF06463 Molybdenum Cofactor Synthesis C LSO59_08460 PF02391 MoaE protein LSO59_08465 PF01967 MoaC family LSO59_08465 PF00994 Probable molybdopterin binding domain LSO59_08470 PF00994 Probable molybdopterin binding domain LSO59_08470 PF03454 MoeA C-terminal region (domain IV) LSO59_08470 PF03453 MoeA N-terminal region (domain I and II) LSO59_08480 PF01638 HxlR-like helix-turn-helix LSO59_08485 PF00155 Aminotransferase class I and II LSO59_08485 PF00392 Bacterial regulatory proteins, gntR family LSO59_08490 PF00892 EamA-like transporter family LSO59_08510 PF02635 DsrE/DsrF-like family LSO59_08515 PF16363 GDP-mannose 4,6 dehydratase LSO59_08520 PF00206 Lyase LSO59_08520 PF10415 Fumarase C C-terminus LSO59_08535 PF00884 Sulfatase LSO59_08535 PF08019 Phosphoethanolamine transferase EptA/EptB LSO59_08545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_08545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_08545 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_08560 PF00106 short chain dehydrogenase LSO59_08585 PF13091 PLD-like domain LSO59_08590 PF02583 Metal-sensitive transcriptional repressor LSO59_08595 PF08240 Alcohol dehydrogenase GroES-like domain LSO59_08595 PF00107 Zinc-binding dehydrogenase LSO59_08605 PF00793 DAHP synthetase I family LSO59_08610 PF01597 Glycine cleavage H-protein LSO59_08615 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term LSO59_08615 PF12833 Helix-turn-helix domain LSO59_08625 PF00005 ABC transporter LSO59_08625 PF00664 ABC transporter transmembrane region LSO59_08630 PF00924 Mechanosensitive ion channel LSO59_08635 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) LSO59_08645 PF00375 Sodium:dicarboxylate symporter family LSO59_08670 PF00107 Zinc-binding dehydrogenase LSO59_08670 PF08240 Alcohol dehydrogenase GroES-like domain LSO59_08680 PF13533 Biotin-lipoyl like LSO59_08685 PF00873 AcrB/AcrD/AcrF family LSO59_08690 PF00873 AcrB/AcrD/AcrF family LSO59_08695 PF02321 Outer membrane efflux protein LSO59_08700 PF08281 Sigma-70, region 4 LSO59_08700 PF04542 Sigma-70 region 2 LSO59_08710 PF10415 Fumarase C C-terminus LSO59_08710 PF00206 Lyase LSO59_08715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_08715 PF03466 LysR substrate binding domain LSO59_08720 PF01047 MarR family LSO59_08730 PF12762 ISXO2-like transposase domain LSO59_08735 PF02661 Fic/DOC family LSO59_08740 PF01494 FAD binding domain LSO59_08745 PF09339 IclR helix-turn-helix domain LSO59_08745 PF01614 Bacterial transcriptional regulator LSO59_08750 PF01011 PQQ enzyme repeat LSO59_08750 PF13360 PQQ-like domain LSO59_08755 PF04966 Carbohydrate-selective porin, OprB family LSO59_08760 PF05048 Periplasmic copper-binding protein (NosD) LSO59_08765 PF01487 Type I 3-dehydroquinase LSO59_08770 PF00775 Dioxygenase LSO59_08775 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal LSO59_08775 PF00775 Dioxygenase LSO59_08780 PF02627 Carboxymuconolactone decarboxylase family LSO59_08785 PF07690 Major Facilitator Superfamily LSO59_08790 PF00561 alpha/beta hydrolase fold LSO59_08795 PF10397 Adenylosuccinate lyase C-terminus LSO59_08795 PF00206 Lyase LSO59_08800 PF02803 Thiolase, C-terminal domain LSO59_08800 PF00108 Thiolase, N-terminal domain LSO59_08805 PF01144 Coenzyme A transferase LSO59_08810 PF01144 Coenzyme A transferase LSO59_08835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_08835 PF03466 LysR substrate binding domain LSO59_08840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LSO59_08845 PF00596 Class II Aldolase and Adducin N-terminal domain LSO59_08850 PF00378 Enoyl-CoA hydratase/isomerase LSO59_08855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_08855 PF12806 Acetyl-CoA dehydrogenase C-terminal like LSO59_08855 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_08855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_08865 PF07690 Major Facilitator Superfamily LSO59_08875 PF01144 Coenzyme A transferase LSO59_08880 PF01144 Coenzyme A transferase LSO59_08885 PF07690 Major Facilitator Superfamily LSO59_08890 PF07690 Major Facilitator Superfamily LSO59_08895 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_08895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_08895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_08900 PF00378 Enoyl-CoA hydratase/isomerase LSO59_08910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO59_08910 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain LSO59_08910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO59_08915 PF02803 Thiolase, C-terminal domain LSO59_08915 PF00108 Thiolase, N-terminal domain LSO59_08920 PF09339 IclR helix-turn-helix domain LSO59_08925 PF02515 CoA-transferase family III LSO59_08930 PF07690 Major Facilitator Superfamily LSO59_08935 PF09339 IclR helix-turn-helix domain LSO59_08940 PF02515 CoA-transferase family III LSO59_08960 PF00753 Metallo-beta-lactamase superfamily LSO59_08970 PF04143 Sulphur transport LSO59_09005 PF03466 LysR substrate binding domain LSO59_09005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_09010 PF03788 LrgA family LSO59_09015 PF04172 LrgB-like family LSO59_09020 PF02654 Cobalamin-5-phosphate synthase LSO59_09030 PF02277 Phosphoribosyltransferase LSO59_09035 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LSO59_09045 PF13419 Haloacid dehalogenase-like hydrolase LSO59_09055 PF04073 Aminoacyl-tRNA editing domain LSO59_09065 PF00291 Pyridoxal-phosphate dependent enzyme LSO59_09110 PF02515 CoA-transferase family III LSO59_09115 PF07690 Major Facilitator Superfamily LSO59_09120 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_09120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_09120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_09125 PF03466 LysR substrate binding domain LSO59_09135 PF04607 Region found in RelA / SpoT proteins LSO59_09135 PF02824 TGS domain LSO59_09135 PF13291 ACT domain LSO59_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_09140 PF03466 LysR substrate binding domain LSO59_09145 PF00557 Metallopeptidase family M24 LSO59_09150 PF05525 Branched-chain amino acid transport protein LSO59_09170 PF00717 Peptidase S24-like LSO59_09175 PF11799 impB/mucB/samB family C-terminal domain LSO59_09175 PF13438 Domain of unknown function (DUF4113) LSO59_09175 PF00817 impB/mucB/samB family LSO59_09180 PF01220 Dehydroquinase class II LSO59_09185 PF00364 Biotin-requiring enzyme LSO59_09190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO59_09190 PF02785 Biotin carboxylase C-terminal domain LSO59_09190 PF00289 Biotin carboxylase, N-terminal domain LSO59_09200 PF01425 Amidase LSO59_09205 PF12832 MFS_1 like family LSO59_09210 PF01261 Xylose isomerase-like TIM barrel LSO59_09220 PF00248 Aldo/keto reductase family LSO59_09230 PF00890 FAD binding domain LSO59_09235 PF00890 FAD binding domain LSO59_09250 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LSO59_09250 PF08501 Shikimate dehydrogenase substrate binding domain LSO59_09250 PF01488 Shikimate / quinate 5-dehydrogenase LSO59_09255 PF07690 Major Facilitator Superfamily LSO59_09270 PF00440 Bacterial regulatory proteins, tetR family LSO59_09270 PF17932 Tetracyclin repressor-like, C-terminal domain LSO59_09275 PF04966 Carbohydrate-selective porin, OprB family LSO59_09280 PF07690 Major Facilitator Superfamily LSO59_09295 PF01614 Bacterial transcriptional regulator LSO59_09295 PF09339 IclR helix-turn-helix domain LSO59_09305 PF00872 Transposase, Mutator family LSO59_09315 PF00639 PPIC-type PPIASE domain LSO59_09315 PF09312 SurA N-terminal domain LSO59_09320 PF00216 Bacterial DNA-binding protein LSO59_09335 PF02082 Transcriptional regulator LSO59_09340 PF00266 Aminotransferase class-V LSO59_09345 PF01592 NifU-like N terminal domain LSO59_09350 PF01521 Iron-sulphur cluster biosynthesis LSO59_09355 PF00226 DnaJ domain LSO59_09355 PF07743 HSCB C-terminal oligomerisation domain LSO59_09360 PF00012 Hsp70 protein LSO59_09365 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO59_09370 PF00211 Adenylate and Guanylate cyclase catalytic domain LSO59_09380 PF03461 TRCF domain LSO59_09380 PF00271 Helicase conserved C-terminal domain LSO59_09380 PF02559 CarD-like/TRCF domain LSO59_09380 PF17757 UvrB interaction domain LSO59_09380 PF00270 DEAD/DEAH box helicase LSO59_09400 PF01565 FAD binding domain LSO59_09400 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LSO59_09405 PF01451 Low molecular weight phosphotyrosine protein phosphatase LSO59_09410 PF00465 Iron-containing alcohol dehydrogenase LSO59_09415 PF03061 Thioesterase superfamily LSO59_09420 PF12169 DNA polymerase III subunits gamma and tau domain III LSO59_09420 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LSO59_09420 PF12170 DNA polymerase III tau subunit V interacting with alpha LSO59_09425 PF07690 Major Facilitator Superfamily LSO59_09440 PF00144 Beta-lactamase LSO59_09445 PF01575 MaoC like domain LSO59_09455 PF02803 Thiolase, C-terminal domain LSO59_09455 PF00108 Thiolase, N-terminal domain LSO59_09460 PF07859 alpha/beta hydrolase fold LSO59_09475 PF03466 LysR substrate binding domain LSO59_09475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_09480 PF00923 Transaldolase/Fructose-6-phosphate aldolase LSO59_09485 PF01810 LysE type translocator LSO59_09490 PF03594 Benzoate membrane transport protein LSO59_09495 PF02308 MgtC family LSO59_09500 PF00690 Cation transporter/ATPase, N-terminus LSO59_09500 PF00689 Cation transporting ATPase, C-terminus LSO59_09515 PF00582 Universal stress protein family LSO59_09525 PF11940 Domain of unknown function (DUF3458) Ig-like fold LSO59_09525 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LSO59_09525 PF01433 Peptidase family M1 domain LSO59_09540 PF02110 Hydroxyethylthiazole kinase family LSO59_09545 PF06445 GyrI-like small molecule binding domain LSO59_09555 PF05970 PIF1-like helicase LSO59_09555 PF14493 Helix-turn-helix domain LSO59_09560 PF00465 Iron-containing alcohol dehydrogenase LSO59_09575 PF00171 Aldehyde dehydrogenase family LSO59_09580 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LSO59_09580 PF00117 Glutamine amidotransferase class-I LSO59_09590 PF04264 YceI-like domain LSO59_09605 PF02780 Transketolase, C-terminal domain LSO59_09605 PF00456 Transketolase, thiamine diphosphate binding domain LSO59_09605 PF02779 Transketolase, pyrimidine binding domain LSO59_09610 PF02772 S-adenosylmethionine synthetase, central domain LSO59_09610 PF02773 S-adenosylmethionine synthetase, C-terminal domain LSO59_09610 PF00438 S-adenosylmethionine synthetase, N-terminal domain LSO59_09625 PF00296 Luciferase-like monooxygenase LSO59_09635 PF02075 Crossover junction endodeoxyribonuclease RuvC LSO59_09640 PF01256 Carbohydrate kinase LSO59_09640 PF03853 YjeF-related protein N-terminus LSO59_09645 PF08331 Domain of unknown function (DUF1730) LSO59_09650 PF06968 Biotin and Thiamin Synthesis associated domain LSO59_09650 PF04055 Radical SAM superfamily LSO59_09665 PF00589 Phage integrase family LSO59_09725 PF13356 Arm DNA-binding domain LSO59_09725 PF00589 Phage integrase family LSO59_09750 PF01661 Macro domain LSO59_09790 PF00115 Cytochrome C and Quinol oxidase polypeptide I LSO59_09855 PF00210 Ferritin-like domain LSO59_09860 PF07715 TonB-dependent Receptor Plug Domain LSO59_09860 PF00593 TonB dependent receptor LSO59_09875 PF01709 Transcriptional regulator LSO59_09890 PF00005 ABC transporter LSO59_09895 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_09900 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_09910 PF00440 Bacterial regulatory proteins, tetR family LSO59_09915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LSO59_09915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LSO59_09920 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LSO59_09925 PF10431 C-terminal, D2-small domain, of ClpB protein LSO59_09925 PF02861 Clp amino terminal domain, pathogenicity island component LSO59_09925 PF17871 AAA lid domain LSO59_09925 PF07724 AAA domain (Cdc48 subfamily) LSO59_09925 PF00004 ATPase family associated with various cellular activities (AAA) LSO59_09930 PF02617 ATP-dependent Clp protease adaptor protein ClpS LSO59_09940 PF02774 Semialdehyde dehydrogenase, dimerisation domain LSO59_09940 PF01118 Semialdehyde dehydrogenase, NAD binding domain LSO59_09955 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LSO59_09960 PF00291 Pyridoxal-phosphate dependent enzyme LSO59_09960 PF00585 C-terminal regulatory domain of Threonine dehydratase LSO59_09965 PF02080 TrkA-C domain LSO59_09965 PF02254 TrkA-N domain LSO59_09970 PF02386 Cation transport protein LSO59_09975 PF02253 Phospholipase A1 LSO59_09980 PF08367 Peptidase M16C associated LSO59_09980 PF00675 Insulinase (Peptidase family M16) LSO59_09980 PF05193 Peptidase M16 inactive domain LSO59_09985 PF00294 pfkB family carbohydrate kinase LSO59_09995 PF07290 Protein of unknown function (DUF1449) LSO59_10005 PF01654 Cytochrome bd terminal oxidase subunit I LSO59_10010 PF02322 Cytochrome bd terminal oxidase subunit II LSO59_10015 PF08173 Membrane bound YbgT-like protein LSO59_10035 PF02881 SRP54-type protein, helical bundle domain LSO59_10035 PF00448 SRP54-type protein, GTPase domain LSO59_10070 PF00571 CBS domain LSO59_10070 PF01380 SIS domain LSO59_10075 PF00772 DnaB-like helicase N terminal domain LSO59_10075 PF03796 DnaB-like helicase C terminal domain LSO59_10080 PF00842 Alanine racemase, C-terminal domain LSO59_10080 PF01168 Alanine racemase, N-terminal domain LSO59_10095 PF08379 Bacterial transglutaminase-like N-terminal region LSO59_10095 PF01841 Transglutaminase-like superfamily LSO59_10105 PF14403 Circularly permuted ATP-grasp type 2 LSO59_10115 PF01134 Glucose inhibited division protein A LSO59_10115 PF13932 GidA associated domain LSO59_10140 PF02954 Bacterial regulatory protein, Fis family LSO59_10145 PF02142 MGS-like domain LSO59_10145 PF01808 AICARFT/IMPCHase bienzyme LSO59_10150 PF02843 Phosphoribosylglycinamide synthetase, C domain LSO59_10150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LSO59_10150 PF02844 Phosphoribosylglycinamide synthetase, N domain LSO59_10155 PF03180 NLPA lipoprotein LSO59_10160 PF00005 ABC transporter LSO59_10160 PF09383 NIL domain LSO59_10165 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_10180 PF16123 Hydroxyacylglutathione hydrolase C-terminus LSO59_10180 PF00753 Metallo-beta-lactamase superfamily LSO59_10205 PF00069 Protein kinase domain LSO59_10205 PF03793 PASTA domain LSO59_10240 PF02684 Lipid-A-disaccharide synthetase LSO59_10265 PF01925 Sulfite exporter TauE/SafE LSO59_10270 PF00793 DAHP synthetase I family LSO59_10280 PF02542 YgbB family LSO59_10290 PF01266 FAD dependent oxidoreductase LSO59_10295 PF03741 Integral membrane protein TerC family LSO59_10295 PF03471 Transporter associated domain LSO59_10310 PF01274 Malate synthase LSO59_10315 PF03969 AFG1-like ATPase LSO59_10335 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LSO59_10350 PF00216 Bacterial DNA-binding protein LSO59_10355 PF00575 S1 RNA binding domain LSO59_10360 PF02224 Cytidylate kinase LSO59_10370 PF14437 MafB19-like deaminase LSO59_10380 PF03167 Uracil DNA glycosylase superfamily LSO59_10390 PF03934 Type II secretion system (T2SS), protein K LSO59_10395 PF07963 Prokaryotic N-terminal methylation motif LSO59_10395 PF11612 Type II secretion system (T2SS), protein J LSO59_10400 PF07963 Prokaryotic N-terminal methylation motif LSO59_10400 PF02501 Type II secretion system (T2SS), protein I LSO59_10415 PF01026 TatD related DNase LSO59_10425 PF09115 DNA polymerase III, delta subunit, C terminal LSO59_10430 PF02348 Cytidylyltransferase LSO59_10435 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LSO59_10440 PF00664 ABC transporter transmembrane region LSO59_10440 PF00005 ABC transporter LSO59_10450 PF01618 MotA/TolQ/ExbB proton channel family LSO59_10455 PF17762 HTH domain found in ParB protein LSO59_10455 PF02195 ParB-like nuclease domain LSO59_10460 PF13614 AAA domain LSO59_10465 PF02527 rRNA small subunit methyltransferase G LSO59_10470 PF00483 Nucleotidyl transferase LSO59_10475 PF01636 Phosphotransferase enzyme family LSO59_10480 PF04453 LPS transport system D LSO59_10480 PF03968 OstA-like protein LSO59_10485 PF00639 PPIC-type PPIASE domain LSO59_10485 PF09312 SurA N-terminal domain LSO59_10490 PF17209 Hfq protein LSO59_10500 PF08676 MutL C terminal dimerisation domain LSO59_10500 PF01119 DNA mismatch repair protein, C-terminal domain LSO59_10505 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LSO59_10510 PF01479 S4 domain LSO59_10510 PF00849 RNA pseudouridylate synthase LSO59_10525 PF00849 RNA pseudouridylate synthase LSO59_10525 PF01479 S4 domain LSO59_10540 PF01975 Survival protein SurE LSO59_10550 PF04284 Protein of unknown function (DUF441) LSO59_10555 PF00563 EAL domain LSO59_10555 PF03707 Bacterial signalling protein N terminal repeat LSO59_10555 PF00990 Diguanylate cyclase, GGDEF domain LSO59_10560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_10560 PF03466 LysR substrate binding domain LSO59_10570 PF07690 Major Facilitator Superfamily LSO59_10575 PF00027 Cyclic nucleotide-binding domain LSO59_10575 PF00520 Ion transport protein LSO59_10580 PF00939 Sodium:sulfate symporter transmembrane region LSO59_10585 PF00171 Aldehyde dehydrogenase family LSO59_10595 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO59_10595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_10605 PF00296 Luciferase-like monooxygenase LSO59_10610 PF03180 NLPA lipoprotein LSO59_10615 PF00005 ABC transporter LSO59_10615 PF09383 NIL domain LSO59_10620 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_10625 PF06071 Protein of unknown function (DUF933) LSO59_10625 PF01926 50S ribosome-binding GTPase LSO59_10630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO59_10630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO59_10650 PF02222 ATP-grasp domain LSO59_10655 PF08335 GlnD PII-uridylyltransferase LSO59_10655 PF01966 HD domain LSO59_10655 PF01909 Nucleotidyltransferase domain LSO59_10660 PF00155 Aminotransferase class I and II LSO59_10675 PF12852 Cupin LSO59_10675 PF12833 Helix-turn-helix domain LSO59_10680 PF00255 Glutathione peroxidase LSO59_10685 PF01641 SelR domain LSO59_10690 PF00155 Aminotransferase class I and II LSO59_10695 PF00710 Asparaginase, N-terminal LSO59_10695 PF17763 Glutaminase/Asparaginase C-terminal domain LSO59_10700 PF02811 PHP domain LSO59_10700 PF01336 OB-fold nucleic acid binding domain LSO59_10700 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LSO59_10700 PF07733 Bacterial DNA polymerase III alpha NTPase domain LSO59_10700 PF14579 Helix-hairpin-helix motif LSO59_10705 PF00588 SpoU rRNA Methylase family LSO59_10710 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_10730 PF00990 Diguanylate cyclase, GGDEF domain LSO59_10755 PF02677 Epoxyqueuosine reductase QueH LSO59_10760 PF12697 Alpha/beta hydrolase family LSO59_10765 PF01979 Amidohydrolase family LSO59_10770 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_10775 PF00005 ABC transporter LSO59_10780 PF09084 NMT1/THI5 like LSO59_10790 PF07726 ATPase family associated with various cellular activities (AAA) LSO59_10790 PF17863 AAA lid domain LSO59_10795 PF04328 Selenoprotein, putative LSO59_10800 PF02554 Carbon starvation protein CstA LSO59_10800 PF13722 5TM C-terminal transporter carbon starvation CstA LSO59_10805 PF01132 Elongation factor P (EF-P) OB domain LSO59_10805 PF09285 Elongation factor P, C-terminal LSO59_10805 PF08207 Elongation factor P (EF-P) KOW-like domain LSO59_10810 PF04055 Radical SAM superfamily LSO59_10830 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LSO59_10830 PF14602 Hexapeptide repeat of succinyl-transferase LSO59_10830 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_10835 PF04055 Radical SAM superfamily LSO59_10840 PF06508 Queuosine biosynthesis protein QueC LSO59_10850 PF00578 AhpC/TSA family LSO59_10855 PF04264 YceI-like domain LSO59_10860 PF00293 NUDIX domain LSO59_10860 PF01467 Cytidylyltransferase-like LSO59_10865 PF00378 Enoyl-CoA hydratase/isomerase LSO59_10875 PF01784 NIF3 (NGG1p interacting factor 3) LSO59_10885 PF02769 AIR synthase related protein, C-terminal domain LSO59_10885 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LSO59_10885 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LSO59_10895 PF02470 MlaD protein LSO59_10900 PF04403 Paraquat-inducible protein A LSO59_10925 PF01979 Amidohydrolase family LSO59_10930 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LSO59_10930 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LSO59_10935 PF01170 Putative RNA methylase family UPF0020 LSO59_10935 PF10672 S-adenosylmethionine-dependent methyltransferase LSO59_10935 PF02926 THUMP domain LSO59_10945 PF02861 Clp amino terminal domain, pathogenicity island component LSO59_10945 PF17871 AAA lid domain LSO59_10945 PF00004 ATPase family associated with various cellular activities (AAA) LSO59_10945 PF10431 C-terminal, D2-small domain, of ClpB protein LSO59_10945 PF07724 AAA domain (Cdc48 subfamily) LSO59_10960 PF02566 OsmC-like protein LSO59_10965 PF00027 Cyclic nucleotide-binding domain LSO59_10965 PF13545 Crp-like helix-turn-helix domain LSO59_10970 PF00248 Aldo/keto reductase family LSO59_10985 PF00709 Adenylosuccinate synthetase LSO59_10990 PF13393 Histidyl-tRNA synthetase LSO59_11000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LSO59_11000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LSO59_11005 PF01411 tRNA synthetases class II (A) LSO59_11005 PF02272 DHHA1 domain LSO59_11005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LSO59_11010 PF01842 ACT domain LSO59_11010 PF13840 ACT domain LSO59_11010 PF00696 Amino acid kinase family LSO59_11015 PF02599 Global regulator protein family LSO59_11020 PF01351 Ribonuclease HII LSO59_11035 PF00962 Adenosine/AMP deaminase LSO59_11040 PF00860 Permease family LSO59_11050 PF01740 STAS domain LSO59_11050 PF00916 Sulfate permease family LSO59_11055 PF00593 TonB dependent receptor LSO59_11055 PF07715 TonB-dependent Receptor Plug Domain LSO59_11060 PF00375 Sodium:dicarboxylate symporter family LSO59_11065 PF02885 Glycosyl transferase family, helical bundle domain LSO59_11065 PF00591 Glycosyl transferase family, a/b domain LSO59_11070 PF07023 Protein of unknown function (DUF1315) LSO59_11075 PF01513 ATP-NAD kinase LSO59_11080 PF00905 Penicillin binding protein transpeptidase domain LSO59_11080 PF14814 Bifunctional transglycosylase second domain LSO59_11080 PF00912 Transglycosylase LSO59_11090 PF00293 NUDIX domain LSO59_11100 PF08521 Two-component sensor kinase N-terminal LSO59_11100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_11100 PF00512 His Kinase A (phospho-acceptor) domain LSO59_11105 PF00072 Response regulator receiver domain LSO59_11105 PF00486 Transcriptional regulatory protein, C terminal LSO59_11110 PF04076 Bacterial OB fold (BOF) protein LSO59_11115 PF00437 Type II/IV secretion system protein LSO59_11115 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LSO59_11120 PF00990 Diguanylate cyclase, GGDEF domain LSO59_11120 PF07694 5TMR of 5TMR-LYT LSO59_11125 PF18389 TrmO C-terminal domain LSO59_11125 PF01980 tRNA-methyltransferase O LSO59_11130 PF00970 Oxidoreductase FAD-binding domain LSO59_11130 PF00175 Oxidoreductase NAD-binding domain LSO59_11135 PF00857 Isochorismatase family LSO59_11140 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LSO59_11145 PF01136 Peptidase family U32 LSO59_11145 PF16325 Peptidase family U32 C-terminal domain LSO59_11150 PF12838 4Fe-4S dicluster domain LSO59_11165 PF05816 Toxic anion resistance protein (TelA) LSO59_11175 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO59_11175 PF14760 Rnk N-terminus LSO59_11180 PF00464 Serine hydroxymethyltransferase LSO59_11200 PF00375 Sodium:dicarboxylate symporter family LSO59_11210 PF01040 UbiA prenyltransferase family LSO59_11215 PF04345 Chorismate lyase LSO59_11225 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LSO59_11230 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LSO59_11235 PF02565 Recombination protein O C terminal LSO59_11235 PF11967 Recombination protein O N terminal LSO59_11245 PF01926 50S ribosome-binding GTPase LSO59_11245 PF07650 KH domain LSO59_11250 PF00035 Double-stranded RNA binding motif LSO59_11250 PF14622 Ribonuclease-III-like LSO59_11260 PF10502 Signal peptidase, peptidase S26 LSO59_11265 PF00009 Elongation factor Tu GTP binding domain LSO59_11265 PF03144 Elongation factor Tu domain 2 LSO59_11265 PF00679 Elongation factor G C-terminus LSO59_11265 PF06421 GTP-binding protein LepA C-terminus LSO59_11275 PF00120 Glutamine synthetase, catalytic domain LSO59_11280 PF13180 PDZ domain LSO59_11285 PF00890 FAD binding domain LSO59_11285 PF02910 Fumarate reductase flavoprotein C-term LSO59_11290 PF02223 Thymidylate kinase LSO59_11295 PF02618 YceG-like family LSO59_11300 PF01063 Amino-transferase class IV LSO59_11315 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_11320 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_11325 PF12857 TOBE-like domain LSO59_11325 PF00005 ABC transporter LSO59_11330 PF03466 LysR substrate binding domain LSO59_11330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_11335 PF01197 Ribosomal protein L31 LSO59_11340 PF13593 SBF-like CPA transporter family (DUF4137) LSO59_11345 PF07690 Major Facilitator Superfamily LSO59_11350 PF05362 Lon protease (S16) C-terminal proteolytic domain LSO59_11350 PF13654 AAA domain LSO59_11355 PF13180 PDZ domain LSO59_11360 PF01784 NIF3 (NGG1p interacting factor 3) LSO59_11365 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO59_11365 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO59_11370 PF00117 Glutamine amidotransferase class-I LSO59_11375 PF02885 Glycosyl transferase family, helical bundle domain LSO59_11375 PF00591 Glycosyl transferase family, a/b domain LSO59_11380 PF00218 Indole-3-glycerol phosphate synthase LSO59_11395 PF13478 XdhC Rossmann domain LSO59_11395 PF02625 XdhC and CoxI family LSO59_11400 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LSO59_11400 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LSO59_11405 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO59_11405 PF01799 [2Fe-2S] binding domain LSO59_11410 PF01227 GTP cyclohydrolase I LSO59_11415 PF09335 SNARE associated Golgi protein LSO59_11420 PF07690 Major Facilitator Superfamily LSO59_11425 PF05675 Protein of unknown function (DUF817) LSO59_11430 PF01208 Uroporphyrinogen decarboxylase (URO-D) LSO59_11440 PF02678 Pirin LSO59_11440 PF17954 Quercetinase C-terminal cupin domain LSO59_11455 PF09615 CRISPR-associated protein (Cas_Csy3) LSO59_11465 PF09611 CRISPR-associated protein (Cas_Csy1) LSO59_11475 PF01867 CRISPR associated protein Cas1 LSO59_11480 PF00999 Sodium/hydrogen exchanger family LSO59_11480 PF02254 TrkA-N domain LSO59_11490 PF00970 Oxidoreductase FAD-binding domain LSO59_11490 PF00175 Oxidoreductase NAD-binding domain LSO59_11490 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO59_11495 PF00171 Aldehyde dehydrogenase family LSO59_11500 PF00355 Rieske [2Fe-2S] domain LSO59_11500 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LSO59_11505 PF07859 alpha/beta hydrolase fold LSO59_11510 PF02028 BCCT, betaine/carnitine/choline family transporter LSO59_11515 PF00180 Isocitrate/isopropylmalate dehydrogenase LSO59_11520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_11520 PF03466 LysR substrate binding domain LSO59_11540 PF00005 ABC transporter LSO59_11545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_11555 PF03466 LysR substrate binding domain LSO59_11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_11560 PF00355 Rieske [2Fe-2S] domain LSO59_11565 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO59_11565 PF03449 Transcription elongation factor, N-terminal LSO59_11570 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO59_11570 PF01464 Transglycosylase SLT domain LSO59_11580 PF01171 PP-loop family LSO59_11585 PF01551 Peptidase family M23 LSO59_11585 PF10145 Phage-related minor tail protein LSO59_11585 PF01464 Transglycosylase SLT domain LSO59_11590 PF01435 Peptidase family M48 LSO59_11600 PF00571 CBS domain LSO59_11600 PF01769 Divalent cation transporter LSO59_11600 PF03448 MgtE intracellular N domain LSO59_11605 PF00873 AcrB/AcrD/AcrF family LSO59_11610 PF01219 Prokaryotic diacylglycerol kinase LSO59_11630 PF00890 FAD binding domain LSO59_11630 PF02910 Fumarate reductase flavoprotein C-term LSO59_11635 PF00392 Bacterial regulatory proteins, gntR family LSO59_11635 PF07702 UTRA domain LSO59_11640 PF00581 Rhodanese-like domain LSO59_11645 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_11655 PF00266 Aminotransferase class-V LSO59_11660 PF00118 TCP-1/cpn60 chaperonin family LSO59_11665 PF00166 Chaperonin 10 Kd subunit LSO59_11680 PF00781 Diacylglycerol kinase catalytic domain LSO59_11685 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain LSO59_11685 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain LSO59_11695 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LSO59_11695 PF01266 FAD dependent oxidoreductase LSO59_11710 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LSO59_11710 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LSO59_11730 PF02595 Glycerate kinase family LSO59_11750 PF00809 Pterin binding enzyme LSO59_11755 PF01434 Peptidase family M41 LSO59_11755 PF00004 ATPase family associated with various cellular activities (AAA) LSO59_11755 PF06480 FtsH Extracellular LSO59_11755 PF17862 AAA+ lid domain LSO59_11760 PF01728 FtsJ-like methyltransferase LSO59_11765 PF01985 CRS1 / YhbY (CRM) domain LSO59_11780 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LSO59_11780 PF00117 Glutamine amidotransferase class-I LSO59_11785 PF02142 MGS-like domain LSO59_11785 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO59_11785 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LSO59_11790 PF01272 Transcription elongation factor, GreA/GreB, C-term LSO59_11790 PF03449 Transcription elongation factor, N-terminal LSO59_11800 PF00582 Universal stress protein family LSO59_11810 PF00582 Universal stress protein family LSO59_11815 PF13090 Polyphosphate kinase C-terminal domain 2 LSO59_11815 PF13089 Polyphosphate kinase N-terminal domain LSO59_11815 PF17941 Polyphosphate kinase C-terminal domain 1 LSO59_11815 PF02503 Polyphosphate kinase middle domain LSO59_11820 PF00912 Transglycosylase LSO59_11825 PF01694 Rhomboid family LSO59_11835 PF00005 ABC transporter LSO59_11840 PF13472 GDSL-like Lipase/Acylhydrolase family LSO59_11845 PF00484 Carbonic anhydrase LSO59_11850 PF12697 Alpha/beta hydrolase family LSO59_11860 PF07715 TonB-dependent Receptor Plug Domain LSO59_11860 PF00593 TonB dependent receptor LSO59_11865 PF07715 TonB-dependent Receptor Plug Domain LSO59_11865 PF00593 TonB dependent receptor LSO59_11870 PF01521 Iron-sulphur cluster biosynthesis LSO59_11870 PF01106 NifU-like domain LSO59_11880 PF00884 Sulfatase LSO59_11885 PF03781 Sulfatase-modifying factor enzyme 1 LSO59_11900 PF00291 Pyridoxal-phosphate dependent enzyme LSO59_11905 PF01384 Phosphate transporter family LSO59_11910 PF02607 B12 binding domain LSO59_11910 PF02965 Vitamin B12 dependent methionine synthase, activation domain LSO59_11910 PF00809 Pterin binding enzyme LSO59_11910 PF02310 B12 binding domain LSO59_11910 PF02574 Homocysteine S-methyltransferase LSO59_11915 PF01043 SecA preprotein cross-linking domain LSO59_11915 PF07517 SecA DEAD-like domain LSO59_11915 PF02810 SEC-C motif LSO59_11915 PF07516 SecA Wing and Scaffold domain LSO59_11930 PF13737 Transposase DDE domain LSO59_11940 PF04480 Protein of unknown function (DUF559) LSO59_11950 PF13340 Putative transposase of IS4/5 family (DUF4096) LSO59_11965 PF07690 Major Facilitator Superfamily LSO59_11975 PF04960 Glutaminase LSO59_11980 PF01327 Polypeptide deformylase LSO59_11995 PF00083 Sugar (and other) transporter LSO59_12000 PF02230 Phospholipase/Carboxylesterase LSO59_12010 PF04973 Nicotinamide mononucleotide transporter LSO59_12030 PF00535 Glycosyl transferase family 2 LSO59_12035 PF14883 Hypothetical glycosyl hydrolase family 13 LSO59_12035 PF01522 Polysaccharide deacetylase LSO59_12045 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO59_12050 PF07152 YaeQ protein LSO59_12055 PF00375 Sodium:dicarboxylate symporter family LSO59_12060 PF02492 CobW/HypB/UreG, nucleotide-binding domain LSO59_12060 PF07683 Cobalamin synthesis protein cobW C-terminal domain LSO59_12070 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) LSO59_12070 PF04717 Type VI secretion system, phage-baseplate injector LSO59_12070 PF13296 Putative type VI secretion system Rhs element Vgr LSO59_12075 PF02540 NAD synthase LSO59_12075 PF00795 Carbon-nitrogen hydrolase LSO59_12095 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LSO59_12095 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LSO59_12100 PF01336 OB-fold nucleic acid binding domain LSO59_12100 PF00152 tRNA synthetases class II (D, K and N) LSO59_12110 PF00156 Phosphoribosyl transferase domain LSO59_12115 PF00301 Rubredoxin LSO59_12120 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_12120 PF18113 Rubredoxin binding C-terminal domain LSO59_12125 PF00561 alpha/beta hydrolase fold LSO59_12130 PF03466 LysR substrate binding domain LSO59_12130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_12150 PF00999 Sodium/hydrogen exchanger family LSO59_12160 PF03358 NADPH-dependent FMN reductase LSO59_12165 PF01638 HxlR-like helix-turn-helix LSO59_12175 PF00588 SpoU rRNA Methylase family LSO59_12180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LSO59_12180 PF14824 Sirohaem biosynthesis protein central LSO59_12180 PF10414 Sirohaem synthase dimerisation region LSO59_12185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LSO59_12185 PF02403 Seryl-tRNA synthetase N-terminal domain LSO59_12195 PF03548 Outer membrane lipoprotein carrier protein LolA LSO59_12205 PF01016 Ribosomal L27 protein LSO59_12210 PF00829 Ribosomal prokaryotic L21 protein LSO59_12215 PF00348 Polyprenyl synthetase LSO59_12225 PF01569 PAP2 superfamily LSO59_12230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_12230 PF00529 HlyD membrane-fusion protein of T1SS LSO59_12235 PF00873 AcrB/AcrD/AcrF family LSO59_12240 PF02321 Outer membrane efflux protein LSO59_12245 PF01906 Putative heavy-metal-binding LSO59_12250 PF01906 Putative heavy-metal-binding LSO59_12265 PF00133 tRNA synthetases class I (I, L, M and V) LSO59_12265 PF10458 Valyl tRNA synthetase tRNA binding arm LSO59_12265 PF08264 Anticodon-binding domain of tRNA LSO59_12275 PF00909 Ammonium Transporter Family LSO59_12285 PF00512 His Kinase A (phospho-acceptor) domain LSO59_12285 PF08521 Two-component sensor kinase N-terminal LSO59_12285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_12290 PF00486 Transcriptional regulatory protein, C terminal LSO59_12290 PF00072 Response regulator receiver domain LSO59_12295 PF07690 Major Facilitator Superfamily LSO59_12305 PF01734 Patatin-like phospholipase LSO59_12315 PF01145 SPFH domain / Band 7 family LSO59_12320 PF00348 Polyprenyl synthetase LSO59_12330 PF04303 PrpF protein LSO59_12335 PF00324 Amino acid permease LSO59_12345 PF06965 Na+/H+ antiporter 1 LSO59_12345 PF01343 Peptidase family S49 LSO59_12355 PF03772 Competence protein LSO59_12355 PF13567 Domain of unknown function (DUF4131) LSO59_12355 PF00753 Metallo-beta-lactamase superfamily LSO59_12360 PF00005 ABC transporter LSO59_12365 PF02687 FtsX-like permease family LSO59_12365 PF12704 MacB-like periplasmic core domain LSO59_12380 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LSO59_12400 PF09615 CRISPR-associated protein (Cas_Csy3) LSO59_12465 PF00929 Exonuclease LSO59_12465 PF11490 DNA polymerase III polC-type N-terminus II LSO59_12465 PF14579 Helix-hairpin-helix motif LSO59_12465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LSO59_12465 PF02811 PHP domain LSO59_12465 PF07733 Bacterial DNA polymerase III alpha NTPase domain LSO59_12640 PF00266 Aminotransferase class-V LSO59_12650 PF13533 Biotin-lipoyl like LSO59_12665 PF04355 SmpA / OmlA family LSO59_12665 PF00691 OmpA family LSO59_12670 PF05658 Head domain of trimeric autotransporter adhesin LSO59_12670 PF13018 Extended Signal Peptide of Type V secretion system LSO59_12670 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO59_12670 PF03895 YadA-like membrane anchor domain LSO59_12675 PF03895 YadA-like membrane anchor domain LSO59_12675 PF05658 Head domain of trimeric autotransporter adhesin LSO59_12675 PF05662 Coiled stalk of trimeric autotransporter adhesin LSO59_12675 PF13018 Extended Signal Peptide of Type V secretion system LSO59_12680 PF01812 5-formyltetrahydrofolate cyclo-ligase family LSO59_12685 PF02190 ATP-dependent protease La (LON) substrate-binding domain LSO59_12685 PF05362 Lon protease (S16) C-terminal proteolytic domain LSO59_12685 PF00004 ATPase family associated with various cellular activities (AAA) LSO59_12690 PF02590 Predicted SPOUT methyltransferase LSO59_12695 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LSO59_12705 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LSO59_12705 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LSO59_12710 PF04060 Putative Fe-S cluster LSO59_12715 PF00633 Helix-hairpin-helix motif LSO59_12715 PF10576 Iron-sulfur binding domain of endonuclease III LSO59_12715 PF00730 HhH-GPD superfamily base excision DNA repair protein LSO59_12725 PF05191 Adenylate kinase, active site lid LSO59_12740 PF03717 Penicillin-binding Protein dimerisation domain LSO59_12740 PF00905 Penicillin binding protein transpeptidase domain LSO59_12770 PF02492 CobW/HypB/UreG, nucleotide-binding domain LSO59_12775 PF01730 UreF LSO59_12780 PF02814 UreE urease accessory protein, N-terminal domain LSO59_12780 PF05194 UreE urease accessory protein, C-terminal domain LSO59_12785 PF01979 Amidohydrolase family LSO59_12785 PF00449 Urease alpha-subunit, N-terminal domain LSO59_12790 PF00699 Urease beta subunit LSO59_12795 PF00547 Urease, gamma subunit LSO59_12800 PF01774 UreD urease accessory protein LSO59_12815 PF04170 NlpE N-terminal domain LSO59_12815 PF17185 NlpE C-terminal OB domain LSO59_12820 PF03060 Nitronate monooxygenase LSO59_12825 PF00463 Isocitrate lyase family LSO59_12830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_12830 PF03466 LysR substrate binding domain LSO59_12835 PF00571 CBS domain LSO59_12835 PF01595 Cyclin M transmembrane N-terminal domain LSO59_12835 PF03471 Transporter associated domain LSO59_12845 PF00005 ABC transporter LSO59_12860 PF00893 Small Multidrug Resistance protein LSO59_12865 PF00497 Bacterial extracellular solute-binding proteins, family 3 LSO59_12870 PF01425 Amidase LSO59_12875 PF01402 Ribbon-helix-helix protein, copG family LSO59_12875 PF08753 NikR C terminal nickel binding domain LSO59_12885 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LSO59_12885 PF00289 Biotin carboxylase, N-terminal domain LSO59_12885 PF02785 Biotin carboxylase C-terminal domain LSO59_12925 PF03600 Citrate transporter LSO59_12930 PF00009 Elongation factor Tu GTP binding domain LSO59_12935 PF01507 Phosphoadenosine phosphosulfate reductase family LSO59_12940 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO59_12940 PF07685 CobB/CobQ-like glutamine amidotransferase domain LSO59_12950 PF07715 TonB-dependent Receptor Plug Domain LSO59_12950 PF00593 TonB dependent receptor LSO59_12960 PF07715 TonB-dependent Receptor Plug Domain LSO59_12960 PF00593 TonB dependent receptor LSO59_12975 PF00037 4Fe-4S binding domain LSO59_12980 PF01467 Cytidylyltransferase-like LSO59_12985 PF01668 SmpB protein LSO59_12990 PF03358 NADPH-dependent FMN reductase LSO59_12995 PF02578 Multi-copper polyphenol oxidoreductase laccase LSO59_13000 PF00849 RNA pseudouridylate synthase LSO59_13000 PF01479 S4 domain LSO59_13005 PF13525 Outer membrane lipoprotein LSO59_13010 PF10410 DnaB-helicase binding domain of primase LSO59_13010 PF08278 DNA primase DnaG DnaB-binding LSO59_13010 PF08275 DNA primase catalytic core, N-terminal domain LSO59_13010 PF01807 CHC2 zinc finger LSO59_13015 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LSO59_13015 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LSO59_13015 PF01488 Shikimate / quinate 5-dehydrogenase LSO59_13025 PF03550 Outer membrane lipoprotein LolB LSO59_13030 PF08544 GHMP kinases C terminal LSO59_13030 PF00288 GHMP kinases N terminal domain LSO59_13055 PF14572 Phosphoribosyl synthetase-associated domain LSO59_13055 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LSO59_13060 PF01386 Ribosomal L25p family LSO59_13065 PF01195 Peptidyl-tRNA hydrolase LSO59_13070 PF02261 Aspartate decarboxylase LSO59_13075 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LSO59_13085 PF00581 Rhodanese-like domain LSO59_13085 PF17773 UPF0176 acylphosphatase like domain LSO59_13100 PF09335 SNARE associated Golgi protein LSO59_13105 PF05724 Thiopurine S-methyltransferase (TPMT) LSO59_13120 PF03979 Sigma-70 factor, region 1.1 LSO59_13120 PF04542 Sigma-70 region 2 LSO59_13120 PF04539 Sigma-70 region 3 LSO59_13120 PF04545 Sigma-70, region 4 LSO59_13120 PF00140 Sigma-70 factor, region 1.2 LSO59_13120 PF04546 Sigma-70, non-essential region LSO59_13125 PF04359 Protein of unknown function (DUF493) LSO59_13130 PF03099 Biotin/lipoate A/B protein ligase family LSO59_13140 PF00465 Iron-containing alcohol dehydrogenase LSO59_13145 PF13520 Amino acid permease LSO59_13150 PF04228 Putative neutral zinc metallopeptidase LSO59_13155 PF05661 Protein of unknown function (DUF808) LSO59_13160 PF00579 tRNA synthetases class I (W and Y) LSO59_13165 PF07290 Protein of unknown function (DUF1449) LSO59_13170 PF01145 SPFH domain / Band 7 family LSO59_13170 PF15975 Flotillin LSO59_13185 PF00535 Glycosyl transferase family 2 LSO59_13190 PF14883 Hypothetical glycosyl hydrolase family 13 LSO59_13190 PF01522 Polysaccharide deacetylase LSO59_13205 PF00549 CoA-ligase LSO59_13205 PF02629 CoA binding domain LSO59_13210 PF00549 CoA-ligase LSO59_13210 PF08442 ATP-grasp domain LSO59_13215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO59_13215 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_13220 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LSO59_13220 PF00364 Biotin-requiring enzyme LSO59_13220 PF02817 e3 binding domain LSO59_13225 PF16078 2-oxoglutarate dehydrogenase N-terminus LSO59_13225 PF00676 Dehydrogenase E1 component LSO59_13225 PF16870 2-oxoglutarate dehydrogenase C-terminal LSO59_13225 PF02779 Transketolase, pyrimidine binding domain LSO59_13230 PF13085 2Fe-2S iron-sulfur cluster binding domain LSO59_13235 PF00890 FAD binding domain LSO59_13235 PF02910 Fumarate reductase flavoprotein C-term LSO59_13240 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LSO59_13245 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LSO59_13250 PF00285 Citrate synthase, C-terminal domain LSO59_13255 PF03061 Thioesterase superfamily LSO59_13265 PF02028 BCCT, betaine/carnitine/choline family transporter LSO59_13270 PF13977 BetI-type transcriptional repressor, C-terminal LSO59_13270 PF00440 Bacterial regulatory proteins, tetR family LSO59_13275 PF00171 Aldehyde dehydrogenase family LSO59_13280 PF05199 GMC oxidoreductase LSO59_13280 PF00732 GMC oxidoreductase LSO59_13295 PF07715 TonB-dependent Receptor Plug Domain LSO59_13295 PF00593 TonB dependent receptor LSO59_13305 PF01032 FecCD transport family LSO59_13310 PF00005 ABC transporter LSO59_13325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO59_13325 PF00205 Thiamine pyrophosphate enzyme, central domain LSO59_13325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO59_13330 PF00171 Aldehyde dehydrogenase family LSO59_13335 PF01958 Domain of unknown function DUF108 LSO59_13335 PF03447 Homoserine dehydrogenase, NAD binding domain LSO59_13345 PF12697 Alpha/beta hydrolase family LSO59_13355 PF07690 Major Facilitator Superfamily LSO59_13360 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_13360 PF14759 Reductase C-terminal LSO59_13375 PF00355 Rieske [2Fe-2S] domain LSO59_13385 PF00355 Rieske [2Fe-2S] domain LSO59_13390 PF01614 Bacterial transcriptional regulator LSO59_13390 PF09339 IclR helix-turn-helix domain LSO59_13395 PF03573 outer membrane porin, OprD family LSO59_13400 PF07690 Major Facilitator Superfamily LSO59_13405 PF00355 Rieske [2Fe-2S] domain LSO59_13410 PF00175 Oxidoreductase NAD-binding domain LSO59_13410 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO59_13430 PF01207 Dihydrouridine synthase (Dus) LSO59_13440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LSO59_13440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LSO59_13450 PF00899 ThiF family LSO59_13455 PF00330 Aconitase family (aconitate hydratase) LSO59_13455 PF00694 Aconitase C-terminal domain LSO59_13460 PF01026 TatD related DNase LSO59_13475 PF16658 Class II release factor RF3, C-terminal domain LSO59_13475 PF00009 Elongation factor Tu GTP binding domain LSO59_13475 PF03144 Elongation factor Tu domain 2 LSO59_13485 PF00990 Diguanylate cyclase, GGDEF domain LSO59_13485 PF03707 Bacterial signalling protein N terminal repeat LSO59_13485 PF00563 EAL domain LSO59_13490 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LSO59_13490 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LSO59_13495 PF10369 Small subunit of acetolactate synthase LSO59_13500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO59_13500 PF00205 Thiamine pyrophosphate enzyme, central domain LSO59_13500 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO59_13510 PF09334 tRNA synthetases class I (M) LSO59_13510 PF08264 Anticodon-binding domain of tRNA LSO59_13510 PF00133 tRNA synthetases class I (I, L, M and V) LSO59_13510 PF13603 Leucyl-tRNA synthetase, Domain 2 LSO59_13525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_13530 PF00005 ABC transporter LSO59_13530 PF02687 FtsX-like permease family LSO59_13530 PF12704 MacB-like periplasmic core domain LSO59_13535 PF02321 Outer membrane efflux protein LSO59_13540 PF00593 TonB dependent receptor LSO59_13540 PF07715 TonB-dependent Receptor Plug Domain LSO59_13545 PF07690 Major Facilitator Superfamily LSO59_13560 PF06276 Ferric iron reductase FhuF-like transporter LSO59_13560 PF04183 IucA / IucC family LSO59_13565 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LSO59_13570 PF04183 IucA / IucC family LSO59_13570 PF06276 Ferric iron reductase FhuF-like transporter LSO59_13575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_13575 PF03466 LysR substrate binding domain LSO59_13580 PF03737 Aldolase/RraA LSO59_13585 PF00155 Aminotransferase class I and II LSO59_13590 PF00375 Sodium:dicarboxylate symporter family LSO59_13595 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LSO59_13595 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LSO59_13605 PF07690 Major Facilitator Superfamily LSO59_13610 PF00982 Glycosyltransferase family 20 LSO59_13650 PF00155 Aminotransferase class I and II LSO59_13650 PF00392 Bacterial regulatory proteins, gntR family LSO59_13655 PF07690 Major Facilitator Superfamily LSO59_13660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_13660 PF00529 HlyD membrane-fusion protein of T1SS LSO59_13665 PF03061 Thioesterase superfamily LSO59_13670 PF00490 Delta-aminolevulinic acid dehydratase LSO59_13675 PF01266 FAD dependent oxidoreductase LSO59_13690 PF00149 Calcineurin-like phosphoesterase LSO59_13690 PF12320 Type 5 capsule protein repressor C-terminal domain LSO59_13710 PF02673 Bacitracin resistance protein BacA LSO59_13715 PF01168 Alanine racemase, N-terminal domain LSO59_13720 PF00437 Type II/IV secretion system protein LSO59_13725 PF00437 Type II/IV secretion system protein LSO59_13730 PF01475 Ferric uptake regulator family LSO59_13735 PF04355 SmpA / OmlA family LSO59_13740 PF03658 RnfH family Ubiquitin LSO59_13750 PF01814 Hemerythrin HHE cation binding domain LSO59_13755 PF13230 Glutamine amidotransferases class-II LSO59_13765 PF00696 Amino acid kinase family LSO59_13770 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO59_13770 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO59_13770 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO59_13770 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO59_13775 PF00692 dUTPase LSO59_13780 PF00580 UvrD/REP helicase N-terminal domain LSO59_13780 PF13361 UvrD-like helicase C-terminal domain LSO59_13785 PF13488 Glycine zipper LSO59_13785 PF00691 OmpA family LSO59_13790 PF01553 Acyltransferase LSO59_13800 PF03775 Septum formation inhibitor MinC, C-terminal domain LSO59_13805 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO59_13810 PF03776 Septum formation topological specificity factor MinE LSO59_13820 PF01810 LysE type translocator LSO59_13825 PF03976 Polyphosphate kinase 2 (PPK2) LSO59_13830 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LSO59_13830 PF17854 FtsK alpha domain LSO59_13830 PF09397 Ftsk gamma domain LSO59_13830 PF01580 FtsK/SpoIIIE family LSO59_13835 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_13840 PF10119 Predicted methyltransferase regulatory domain LSO59_13840 PF13847 Methyltransferase domain LSO59_13845 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LSO59_13850 PF04377 Arginine-tRNA-protein transferase, C terminus LSO59_13850 PF04376 Arginine-tRNA-protein transferase, N terminus LSO59_13855 PF00583 Acetyltransferase (GNAT) family LSO59_13865 PF03144 Elongation factor Tu domain 2 LSO59_13865 PF03143 Elongation factor Tu C-terminal domain LSO59_13865 PF00009 Elongation factor Tu GTP binding domain LSO59_13870 PF00679 Elongation factor G C-terminus LSO59_13870 PF14492 Elongation Factor G, domain II LSO59_13870 PF03764 Elongation factor G, domain IV LSO59_13870 PF03144 Elongation factor Tu domain 2 LSO59_13870 PF00009 Elongation factor Tu GTP binding domain LSO59_13875 PF00177 Ribosomal protein S7p/S5e LSO59_13880 PF00164 Ribosomal protein S12/S23 LSO59_13890 PF00109 Beta-ketoacyl synthase, N-terminal domain LSO59_13890 PF02801 Beta-ketoacyl synthase, C-terminal domain LSO59_13895 PF03653 Uncharacterised protein family (UPF0093) LSO59_13900 PF01757 Acyltransferase family LSO59_13910 PF13419 Haloacid dehalogenase-like hydrolase LSO59_13915 PF03070 TENA/THI-4/PQQC family LSO59_13915 PF08543 Phosphomethylpyrimidine kinase LSO59_13915 PF02581 Thiamine monophosphate synthase LSO59_13920 PF01638 HxlR-like helix-turn-helix LSO59_13925 PF02525 Flavodoxin-like fold LSO59_13930 PF04972 BON domain LSO59_13930 PF01476 LysM domain LSO59_13935 PF00550 Phosphopantetheine attachment site LSO59_13945 PF00698 Acyl transferase domain LSO59_13950 PF01783 Ribosomal L32p protein family LSO59_13955 PF02620 Large ribosomal RNA subunit accumulation protein YceD LSO59_13960 PF04315 Elongation factor P hydroxylase LSO59_13965 PF01300 Telomere recombination LSO59_13975 PF02616 Segregation and condensation protein ScpA LSO59_13980 PF04079 Segregation and condensation complex subunit ScpB LSO59_13985 PF00849 RNA pseudouridylate synthase LSO59_13985 PF01479 S4 domain LSO59_14005 PF00155 Aminotransferase class I and II LSO59_14010 PF04055 Radical SAM superfamily LSO59_14010 PF06968 Biotin and Thiamin Synthesis associated domain LSO59_14010 PF00202 Aminotransferase class-III LSO59_14025 PF00578 AhpC/TSA family LSO59_14030 PF00210 Ferritin-like domain LSO59_14040 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LSO59_14040 PF01653 NAD-dependent DNA ligase adenylation domain LSO59_14040 PF12826 Helix-hairpin-helix motif LSO59_14040 PF00533 BRCA1 C Terminus (BRCT) domain LSO59_14040 PF03120 NAD-dependent DNA ligase OB-fold domain LSO59_14050 PF06470 SMC proteins Flexible Hinge Domain LSO59_14050 PF02463 RecF/RecN/SMC N terminal domain LSO59_14060 PF01925 Sulfite exporter TauE/SafE LSO59_14065 PF02237 Biotin protein ligase C terminal domain LSO59_14065 PF03099 Biotin/lipoate A/B protein ligase family LSO59_14065 PF08279 HTH domain LSO59_14070 PF03309 Type III pantothenate kinase LSO59_14075 PF06821 Serine hydrolase LSO59_14080 PF00448 SRP54-type protein, GTPase domain LSO59_14080 PF02881 SRP54-type protein, helical bundle domain LSO59_14080 PF02978 Signal peptide binding domain LSO59_14090 PF01207 Dihydrouridine synthase (Dus) LSO59_14105 PF07411 Domain of unknown function (DUF1508) LSO59_14110 PF00293 NUDIX domain LSO59_14115 PF03831 PhnA domain LSO59_14115 PF08274 PhnA Zinc-Ribbon LSO59_14125 PF00849 RNA pseudouridylate synthase LSO59_14130 PF01734 Patatin-like phospholipase LSO59_14135 PF01235 Sodium:alanine symporter family LSO59_14140 PF03616 Sodium/glutamate symporter LSO59_14150 PF00881 Nitroreductase family LSO59_14155 PF07690 Major Facilitator Superfamily LSO59_14160 PF12805 FUSC-like inner membrane protein yccS LSO59_14170 PF00175 Oxidoreductase NAD-binding domain LSO59_14170 PF00667 FAD binding domain LSO59_14170 PF00258 Flavodoxin LSO59_14215 PF03734 L,D-transpeptidase catalytic domain LSO59_14215 PF17969 L,D-transpeptidase C-terminal domain LSO59_14220 PF04304 Protein of unknown function (DUF454) LSO59_14230 PF08085 Entericidin EcnA/B family LSO59_14235 PF07687 Peptidase dimerisation domain LSO59_14235 PF01546 Peptidase family M20/M25/M40 LSO59_14240 PF13505 Outer membrane protein beta-barrel domain LSO59_14240 PF00691 OmpA family LSO59_14250 PF02803 Thiolase, C-terminal domain LSO59_14250 PF00108 Thiolase, N-terminal domain LSO59_14265 PF00581 Rhodanese-like domain LSO59_14270 PF04461 Protein of unknown function (DUF520) LSO59_14280 PF13185 GAF domain LSO59_14285 PF03061 Thioesterase superfamily LSO59_14290 PF00085 Thioredoxin LSO59_14300 PF04273 Putative phosphatase (DUF442) LSO59_14300 PF00753 Metallo-beta-lactamase superfamily LSO59_14310 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_14310 PF00403 Heavy-metal-associated domain LSO59_14310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LSO59_14345 PF17152 Periplasmic sensor domain LSO59_14345 PF00990 Diguanylate cyclase, GGDEF domain LSO59_14350 PF00691 OmpA family LSO59_14350 PF13488 Glycine zipper LSO59_14375 PF02445 Quinolinate synthetase A protein LSO59_14380 PF01960 ArgJ family LSO59_14390 PF01043 SecA preprotein cross-linking domain LSO59_14390 PF07516 SecA Wing and Scaffold domain LSO59_14390 PF02810 SEC-C motif LSO59_14390 PF07517 SecA DEAD-like domain LSO59_14395 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO59_14395 PF00578 AhpC/TSA family LSO59_14400 PF00753 Metallo-beta-lactamase superfamily LSO59_14415 PF08245 Mur ligase middle domain LSO59_14415 PF02875 Mur ligase family, glutamate ligase domain LSO59_14420 PF01039 Carboxyl transferase domain LSO59_14425 PF00290 Tryptophan synthase alpha chain LSO59_14450 PF00291 Pyridoxal-phosphate dependent enzyme LSO59_14455 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LSO59_14460 PF07715 TonB-dependent Receptor Plug Domain LSO59_14460 PF00593 TonB dependent receptor LSO59_14465 PF01923 Cobalamin adenosyltransferase LSO59_14485 PF04607 Region found in RelA / SpoT proteins LSO59_14485 PF13291 ACT domain LSO59_14485 PF02824 TGS domain LSO59_14490 PF05958 tRNA (Uracil-5-)-methyltransferase LSO59_14500 PF00291 Pyridoxal-phosphate dependent enzyme LSO59_14505 PF00672 HAMP domain LSO59_14505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_14505 PF00512 His Kinase A (phospho-acceptor) domain LSO59_14505 PF01627 Hpt domain LSO59_14505 PF00072 Response regulator receiver domain LSO59_14505 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LSO59_14510 PF00378 Enoyl-CoA hydratase/isomerase LSO59_14515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO59_14515 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO59_14520 PF01261 Xylose isomerase-like TIM barrel LSO59_14540 PF06689 ClpX C4-type zinc finger LSO59_14540 PF07724 AAA domain (Cdc48 subfamily) LSO59_14540 PF10431 C-terminal, D2-small domain, of ClpB protein LSO59_14545 PF00574 Clp protease LSO59_14550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO59_14550 PF05698 Bacterial trigger factor protein (TF) C-terminus LSO59_14550 PF05697 Bacterial trigger factor protein (TF) LSO59_14555 PF07715 TonB-dependent Receptor Plug Domain LSO59_14555 PF00593 TonB dependent receptor LSO59_14560 PF13640 2OG-Fe(II) oxygenase superfamily LSO59_14560 PF18331 PKHD-type hydroxylase C-terminal domain LSO59_14565 PF00682 HMGL-like LSO59_14565 PF08502 LeuA allosteric (dimerisation) domain LSO59_14570 PF00561 alpha/beta hydrolase fold LSO59_14575 PF00561 alpha/beta hydrolase fold LSO59_14575 PF07021 Methionine biosynthesis protein MetW LSO59_14585 PF01725 Ham1 family LSO59_14595 PF02416 mttA/Hcf106 family LSO59_14600 PF02416 mttA/Hcf106 family LSO59_14605 PF00902 Sec-independent protein translocase protein (TatC) LSO59_14620 PF01790 Prolipoprotein diacylglyceryl transferase LSO59_14630 PF00303 Thymidylate synthase LSO59_14635 PF00186 Dihydrofolate reductase LSO59_14650 PF01625 Peptide methionine sulfoxide reductase LSO59_14660 PF01618 MotA/TolQ/ExbB proton channel family LSO59_14665 PF03544 Gram-negative bacterial TonB protein C-terminal LSO59_14670 PF00551 Formyl transferase LSO59_14670 PF01842 ACT domain LSO59_14675 PF17932 Tetracyclin repressor-like, C-terminal domain LSO59_14675 PF00440 Bacterial regulatory proteins, tetR family LSO59_14680 PF00171 Aldehyde dehydrogenase family LSO59_14685 PF00830 Ribosomal L28 family LSO59_14690 PF00471 Ribosomal protein L33 LSO59_14695 PF02254 TrkA-N domain LSO59_14695 PF00999 Sodium/hydrogen exchanger family LSO59_14715 PF00580 UvrD/REP helicase N-terminal domain LSO59_14715 PF13361 UvrD-like helicase C-terminal domain LSO59_14725 PF00990 Diguanylate cyclase, GGDEF domain LSO59_14725 PF01590 GAF domain LSO59_14725 PF00563 EAL domain LSO59_14725 PF00360 Phytochrome region LSO59_14740 PF08272 Topoisomerase I zinc-ribbon-like LSO59_14740 PF01131 DNA topoisomerase LSO59_14740 PF01751 Toprim domain LSO59_14740 PF01396 Topoisomerase DNA binding C4 zinc finger LSO59_14755 PF04102 SlyX LSO59_14760 PF00005 ABC transporter LSO59_14760 PF16326 ABC transporter C-terminal domain LSO59_14760 PF12848 ABC transporter LSO59_14770 PF03279 Bacterial lipid A biosynthesis acyltransferase LSO59_14775 PF13439 Glycosyltransferase Family 4 LSO59_14775 PF00534 Glycosyl transferases group 1 LSO59_14780 PF00375 Sodium:dicarboxylate symporter family LSO59_14795 PF02774 Semialdehyde dehydrogenase, dimerisation domain LSO59_14795 PF01118 Semialdehyde dehydrogenase, NAD binding domain LSO59_14815 PF01416 tRNA pseudouridine synthase LSO59_14830 PF01176 Translation initiation factor 1A / IF-1 LSO59_14840 PF00180 Isocitrate/isopropylmalate dehydrogenase LSO59_14850 PF00694 Aconitase C-terminal domain LSO59_14855 PF00330 Aconitase family (aconitate hydratase) LSO59_14870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_14870 PF03466 LysR substrate binding domain LSO59_14885 PF00293 NUDIX domain LSO59_14890 PF01590 GAF domain LSO59_14890 PF05524 PEP-utilising enzyme, N-terminal LSO59_14890 PF00391 PEP-utilising enzyme, mobile domain LSO59_14890 PF02896 PEP-utilising enzyme, TIM barrel domain LSO59_14895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LSO59_14895 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_14895 PF18158 Adaptive response protein AidB N-terminal domain LSO59_14905 PF00199 Catalase LSO59_14905 PF06628 Catalase-related immune-responsive LSO59_14910 PF13360 PQQ-like domain LSO59_14910 PF01011 PQQ enzyme repeat LSO59_14915 PF12706 Beta-lactamase superfamily domain LSO59_14920 PF16916 Dimerisation domain of Zinc Transporter LSO59_14920 PF01545 Cation efflux family LSO59_14925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_14925 PF03466 LysR substrate binding domain LSO59_14940 PF00849 RNA pseudouridylate synthase LSO59_14940 PF01479 S4 domain LSO59_14945 PF12111 Polyribonucleotide phosphorylase C terminal LSO59_14945 PF10150 Ribonuclease E/G family LSO59_14945 PF00575 S1 RNA binding domain LSO59_14950 PF00501 AMP-binding enzyme LSO59_14950 PF13193 AMP-binding enzyme C-terminal domain LSO59_14965 PF10417 C-terminal domain of 1-Cys peroxiredoxin LSO59_14965 PF00578 AhpC/TSA family LSO59_14970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_14970 PF03466 LysR substrate binding domain LSO59_14975 PF00106 short chain dehydrogenase LSO59_14985 PF04542 Sigma-70 region 2 LSO59_14985 PF08281 Sigma-70, region 4 LSO59_14990 PF07715 TonB-dependent Receptor Plug Domain LSO59_14990 PF00593 TonB dependent receptor LSO59_14995 PF04055 Radical SAM superfamily LSO59_14995 PF06969 HemN C-terminal domain LSO59_15005 PF01554 MatE LSO59_15010 PF02770 Acyl-CoA dehydrogenase, middle domain LSO59_15010 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO59_15010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_15015 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LSO59_15015 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LSO59_15020 PF03109 ABC1 family LSO59_15025 PF01197 Ribosomal protein L31 LSO59_15040 PF01613 Flavin reductase like domain LSO59_15045 PF08267 Cobalamin-independent synthase, N-terminal domain LSO59_15045 PF01717 Cobalamin-independent synthase, Catalytic domain LSO59_15060 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LSO59_15060 PF13247 4Fe-4S dicluster domain LSO59_15060 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_15070 PF03884 DNA gyrase inhibitor YacG LSO59_15080 PF00753 Metallo-beta-lactamase superfamily LSO59_15085 PF00762 Ferrochelatase LSO59_15095 PF01177 Asp/Glu/Hydantoin racemase LSO59_15115 PF01810 LysE type translocator LSO59_15120 PF01206 Sulfurtransferase TusA LSO59_15125 PF00571 CBS domain LSO59_15125 PF03471 Transporter associated domain LSO59_15130 PF00795 Carbon-nitrogen hydrolase LSO59_15135 PF01588 Putative tRNA binding domain LSO59_15145 PF07963 Prokaryotic N-terminal methylation motif LSO59_15145 PF08334 Type II secretion system (T2SS), protein G LSO59_15150 PF00482 Type II secretion system (T2SS), protein F LSO59_15155 PF00270 DEAD/DEAH box helicase LSO59_15155 PF00271 Helicase conserved C-terminal domain LSO59_15155 PF17764 3′ DNA-binding domain (3′BD) LSO59_15155 PF18074 Primosomal protein N C-terminal domain LSO59_15155 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LSO59_15160 PF00999 Sodium/hydrogen exchanger family LSO59_15160 PF02254 TrkA-N domain LSO59_15165 PF01430 Hsp33 protein LSO59_15170 PF00226 DnaJ domain LSO59_15170 PF01556 DnaJ C terminal domain LSO59_15185 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LSO59_15190 PF01544 CorA-like Mg2+ transporter protein LSO59_15195 PF04325 Protein of unknown function (DUF465) LSO59_15200 PF01138 3' exoribonuclease family, domain 1 LSO59_15200 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LSO59_15200 PF00013 KH domain LSO59_15200 PF03725 3' exoribonuclease family, domain 2 LSO59_15200 PF00575 S1 RNA binding domain LSO59_15205 PF00312 Ribosomal protein S15 LSO59_15210 PF00144 Beta-lactamase LSO59_15215 PF13538 UvrD-like helicase C-terminal domain LSO59_15220 PF12705 PD-(D/E)XK nuclease superfamily LSO59_15220 PF00580 UvrD/REP helicase N-terminal domain LSO59_15220 PF13361 UvrD-like helicase C-terminal domain LSO59_15225 PF17946 RecC C-terminal domain LSO59_15235 PF07690 Major Facilitator Superfamily LSO59_15240 PF03976 Polyphosphate kinase 2 (PPK2) LSO59_15250 PF01209 ubiE/COQ5 methyltransferase family LSO59_15260 PF03109 ABC1 family LSO59_15265 PF01494 FAD binding domain LSO59_15270 PF01502 Phosphoribosyl-AMP cyclohydrolase LSO59_15285 PF00361 Proton-conducting membrane transporter LSO59_15285 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LSO59_15285 PF13244 Domain of unknown function (DUF4040) LSO59_15285 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LSO59_15290 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LSO59_15295 PF00361 Proton-conducting membrane transporter LSO59_15300 PF01899 Na+/H+ ion antiporter subunit LSO59_15305 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LSO59_15310 PF03334 Na+/H+ antiporter subunit LSO59_15315 PF02033 Ribosome-binding factor A LSO59_15320 PF04760 Translation initiation factor IF-2, N-terminal region LSO59_15320 PF08364 Bacterial translation initiation factor IF-2 associated region LSO59_15320 PF11987 Translation-initiation factor 2 LSO59_15320 PF00009 Elongation factor Tu GTP binding domain LSO59_15325 PF13184 NusA-like KH domain LSO59_15325 PF00575 S1 RNA binding domain LSO59_15325 PF08529 NusA N-terminal domain LSO59_15330 PF17384 RimP C-terminal SH3 domain LSO59_15330 PF02576 RimP N-terminal domain LSO59_15350 PF03840 Preprotein translocase SecG subunit LSO59_15355 PF00121 Triosephosphate isomerase LSO59_15360 PF00437 Type II/IV secretion system protein LSO59_15360 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LSO59_15365 PF00482 Type II secretion system (T2SS), protein F LSO59_15375 PF06750 Bacterial Peptidase A24 N-terminal domain LSO59_15375 PF01478 Type IV leader peptidase family LSO59_15380 PF01121 Dephospho-CoA kinase LSO59_15390 PF00588 SpoU rRNA Methylase family LSO59_15390 PF08032 RNA 2'-O ribose methyltransferase substrate binding LSO59_15395 PF06865 Pyrimidine/purine nucleoside phosphorylase LSO59_15400 PF02463 RecF/RecN/SMC N terminal domain LSO59_15405 PF02622 Uncharacterized ACR, COG1678 LSO59_15410 PF03652 Holliday junction resolvase LSO59_15415 PF13533 Biotin-lipoyl like LSO59_15425 PF04632 Fusaric acid resistance protein family LSO59_15435 PF00664 ABC transporter transmembrane region LSO59_15435 PF00005 ABC transporter LSO59_15445 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LSO59_15445 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LSO59_15445 PF12833 Helix-turn-helix domain LSO59_15445 PF02805 Metal binding domain of Ada LSO59_15450 PF01066 CDP-alcohol phosphatidyltransferase LSO59_15460 PF01541 GIY-YIG catalytic domain LSO59_15460 PF02151 UvrB/uvrC motif LSO59_15460 PF08459 UvrC Helix-hairpin-helix N-terminal LSO59_15475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LSO59_15475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LSO59_15475 PF00378 Enoyl-CoA hydratase/isomerase LSO59_15480 PF02803 Thiolase, C-terminal domain LSO59_15480 PF00108 Thiolase, N-terminal domain LSO59_15505 PF15864 Protein glycosylation ligase LSO59_15505 PF04932 O-Antigen ligase LSO59_15505 PF11846 Virulence factor membrane-bound polymerase, C-terminal LSO59_15515 PF15864 Protein glycosylation ligase LSO59_15515 PF04932 O-Antigen ligase LSO59_15515 PF11846 Virulence factor membrane-bound polymerase, C-terminal LSO59_15530 PF01757 Acyltransferase family LSO59_15535 PF07963 Prokaryotic N-terminal methylation motif LSO59_15535 PF00114 Pilin (bacterial filament) LSO59_15545 PF00535 Glycosyl transferase family 2 LSO59_15550 PF08241 Methyltransferase domain LSO59_15555 PF00005 ABC transporter LSO59_15555 PF00664 ABC transporter transmembrane region LSO59_15560 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LSO59_15560 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LSO59_15560 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LSO59_15575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LSO59_15580 PF13649 Methyltransferase domain LSO59_15590 PF16363 GDP-mannose 4,6 dehydratase LSO59_15595 PF01370 NAD dependent epimerase/dehydratase family LSO59_15600 PF01050 Mannose-6-phosphate isomerase LSO59_15600 PF00483 Nucleotidyl transferase LSO59_15615 PF03275 UDP-galactopyranose mutase LSO59_15625 PF00534 Glycosyl transferases group 1 LSO59_15695 PF04536 TPM domain LSO59_15700 PF04011 LemA family LSO59_15715 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LSO59_15715 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_15720 PF00310 Glutamine amidotransferases class-II LSO59_15720 PF04898 Glutamate synthase central domain LSO59_15720 PF01645 Conserved region in glutamate synthase LSO59_15720 PF01493 GXGXG motif LSO59_15730 PF01761 3-dehydroquinate synthase LSO59_15735 PF01202 Shikimate kinase LSO59_15740 PF00263 Bacterial type II and III secretion system protein LSO59_15740 PF11741 AMIN domain LSO59_15740 PF07660 Secretin and TonB N terminus short domain LSO59_15740 PF03958 Bacterial type II/III secretion system short domain LSO59_15750 PF04350 Pilus assembly protein, PilO LSO59_15755 PF05137 Fimbrial assembly protein (PilN) LSO59_15760 PF11104 Type IV pilus assembly protein PilM; LSO59_15765 PF00912 Transglycosylase LSO59_15765 PF17092 Penicillin-binding protein OB-like domain LSO59_15765 PF00905 Penicillin binding protein transpeptidase domain LSO59_15770 PF13649 Methyltransferase domain LSO59_15775 PF00953 Glycosyl transferase family 4 LSO59_15780 PF08245 Mur ligase middle domain LSO59_15780 PF01225 Mur ligase family, catalytic domain LSO59_15780 PF02875 Mur ligase family, glutamate ligase domain LSO59_15785 PF02875 Mur ligase family, glutamate ligase domain LSO59_15785 PF08245 Mur ligase middle domain LSO59_15785 PF01225 Mur ligase family, catalytic domain LSO59_15790 PF03717 Penicillin-binding Protein dimerisation domain LSO59_15790 PF00905 Penicillin binding protein transpeptidase domain LSO59_15800 PF01795 MraW methylase family LSO59_15815 PF00749 tRNA synthetases class I (E and Q), catalytic domain LSO59_15835 PF01545 Cation efflux family LSO59_15840 PF00873 AcrB/AcrD/AcrF family LSO59_15845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_15845 PF00529 HlyD membrane-fusion protein of T1SS LSO59_15865 PF12848 ABC transporter LSO59_15865 PF00005 ABC transporter LSO59_15870 PF00205 Thiamine pyrophosphate enzyme, central domain LSO59_15870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LSO59_15870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LSO59_15875 PF01053 Cys/Met metabolism PLP-dependent enzyme LSO59_15880 PF00106 short chain dehydrogenase LSO59_15895 PF09371 Tex-like protein N-terminal domain LSO59_15895 PF00575 S1 RNA binding domain LSO59_15895 PF16921 Tex protein YqgF-like domain LSO59_15895 PF17674 HHH domain LSO59_15900 PF00072 Response regulator receiver domain LSO59_15900 PF00486 Transcriptional regulatory protein, C terminal LSO59_15905 PF00672 HAMP domain LSO59_15905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_15905 PF00512 His Kinase A (phospho-acceptor) domain LSO59_15910 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LSO59_15910 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LSO59_15915 PF00583 Acetyltransferase (GNAT) family LSO59_15945 PF00475 Imidazoleglycerol-phosphate dehydratase LSO59_15950 PF00117 Glutamine amidotransferase class-I LSO59_15960 PF00977 Histidine biosynthesis protein LSO59_15970 PF00005 ABC transporter LSO59_15970 PF00664 ABC transporter transmembrane region LSO59_15975 PF01266 FAD dependent oxidoreductase LSO59_15980 PF00324 Amino acid permease LSO59_16000 PF01636 Phosphotransferase enzyme family LSO59_16005 PF00977 Histidine biosynthesis protein LSO59_16020 PF00230 Major intrinsic protein LSO59_16040 PF02705 K+ potassium transporter LSO59_16050 PF00589 Phage integrase family LSO59_16050 PF13356 Arm DNA-binding domain LSO59_16055 PF02661 Fic/DOC family LSO59_16055 PF13784 Fic/DOC family N-terminal LSO59_16060 PF12008 Type I restriction and modification enzyme - subunit R C terminal LSO59_16060 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LSO59_16060 PF18766 SWI2/SNF2 ATPase LSO59_16070 PF01420 Type I restriction modification DNA specificity domain LSO59_16075 PF01420 Type I restriction modification DNA specificity domain LSO59_16080 PF02384 N-6 DNA Methylase LSO59_16080 PF12161 HsdM N-terminal domain LSO59_16135 PF13784 Fic/DOC family N-terminal LSO59_16135 PF02661 Fic/DOC family LSO59_16160 PF03050 Transposase IS66 family LSO59_16160 PF13005 zinc-finger binding domain of transposase IS66 LSO59_16160 PF13007 Transposase C of IS166 homeodomain LSO59_16160 PF13817 IS66 C-terminal element LSO59_16195 PF01144 Coenzyme A transferase LSO59_16200 PF01144 Coenzyme A transferase LSO59_16205 PF01494 FAD binding domain LSO59_16210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO59_16215 PF01557 Fumarylacetoacetate (FAA) hydrolase family LSO59_16225 PF00436 Single-strand binding protein family LSO59_16230 PF07690 Major Facilitator Superfamily LSO59_16240 PF03070 TENA/THI-4/PQQC family LSO59_16250 PF06942 GlpM protein LSO59_16265 PF17760 UvrA interaction domain LSO59_16265 PF17755 UvrA DNA-binding domain LSO59_16275 PF17158 Membrane-associated sensor, integral membrane domain LSO59_16275 PF00990 Diguanylate cyclase, GGDEF domain LSO59_16280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LSO59_16295 PF01593 Flavin containing amine oxidoreductase LSO59_16300 PF02678 Pirin LSO59_16300 PF05726 Pirin C-terminal cupin domain LSO59_16305 PF00857 Isochorismatase family LSO59_16315 PF13533 Biotin-lipoyl like LSO59_16335 PF03412 Peptidase C39 family LSO59_16335 PF00005 ABC transporter LSO59_16335 PF00664 ABC transporter transmembrane region LSO59_16340 PF02321 Outer membrane efflux protein LSO59_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_16360 PF03459 TOBE domain LSO59_16365 PF06969 HemN C-terminal domain LSO59_16365 PF04055 Radical SAM superfamily LSO59_16370 PF00324 Amino acid permease LSO59_16380 PF00842 Alanine racemase, C-terminal domain LSO59_16380 PF01168 Alanine racemase, N-terminal domain LSO59_16385 PF01266 FAD dependent oxidoreductase LSO59_16390 PF01037 Lrp/AsnC ligand binding domain LSO59_16400 PF00155 Aminotransferase class I and II LSO59_16410 PF01565 FAD binding domain LSO59_16410 PF09330 D-lactate dehydrogenase, membrane binding LSO59_16415 PF01070 FMN-dependent dehydrogenase LSO59_16420 PF00392 Bacterial regulatory proteins, gntR family LSO59_16420 PF07729 FCD domain LSO59_16425 PF02652 L-lactate permease LSO59_16430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_16430 PF03466 LysR substrate binding domain LSO59_16435 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LSO59_16435 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LSO59_16435 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LSO59_16435 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LSO59_16445 PF14052 Capsule assembly protein Wzi LSO59_16450 PF16363 GDP-mannose 4,6 dehydratase LSO59_16455 PF00342 Phosphoglucose isomerase LSO59_16460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LSO59_16460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LSO59_16460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LSO59_16465 PF00483 Nucleotidyl transferase LSO59_16470 PF02397 Bacterial sugar transferase LSO59_16475 PF00535 Glycosyl transferase family 2 LSO59_16490 PF00535 Glycosyl transferase family 2 LSO59_16495 PF00535 Glycosyl transferase family 2 LSO59_16510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LSO59_16510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LSO59_16510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LSO59_16515 PF02563 Polysaccharide biosynthesis/export protein LSO59_16515 PF10531 SLBB domain LSO59_16515 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LSO59_16520 PF01451 Low molecular weight phosphotyrosine protein phosphatase LSO59_16525 PF13614 AAA domain LSO59_16525 PF13807 G-rich domain on putative tyrosine kinase LSO59_16525 PF02706 Chain length determinant protein LSO59_16530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO59_16530 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LSO59_16535 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LSO59_16535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO59_16540 PF03023 Lipid II flippase MurJ LSO59_16545 PF01510 N-acetylmuramoyl-L-alanine amidase LSO59_16550 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LSO59_16550 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LSO59_16560 PF04185 Phosphoesterase family LSO59_16560 PF05506 Domain of unknown function (DUF756) LSO59_16565 PF03725 3' exoribonuclease family, domain 2 LSO59_16565 PF01138 3' exoribonuclease family, domain 1 LSO59_16570 PF00487 Fatty acid desaturase LSO59_16575 PF00175 Oxidoreductase NAD-binding domain LSO59_16580 PF00440 Bacterial regulatory proteins, tetR family LSO59_16585 PF00440 Bacterial regulatory proteins, tetR family LSO59_16585 PF08360 QacR-like protein, C-terminal region LSO59_16590 PF01323 DSBA-like thioredoxin domain LSO59_16600 PF13419 Haloacid dehalogenase-like hydrolase LSO59_16605 PF00106 short chain dehydrogenase LSO59_16625 PF00696 Amino acid kinase family LSO59_16625 PF00583 Acetyltransferase (GNAT) family LSO59_16630 PF09084 NMT1/THI5 like LSO59_16635 PF09084 NMT1/THI5 like LSO59_16640 PF00296 Luciferase-like monooxygenase LSO59_16645 PF00528 Binding-protein-dependent transport system inner membrane component LSO59_16650 PF00005 ABC transporter LSO59_16655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LSO59_16655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LSO59_16660 PF00860 Permease family LSO59_16665 PF01613 Flavin reductase like domain LSO59_16670 PF01042 Endoribonuclease L-PSP LSO59_16675 PF00857 Isochorismatase family LSO59_16680 PF00296 Luciferase-like monooxygenase LSO59_16685 PF08362 YcdC-like protein, C-terminal region LSO59_16685 PF00440 Bacterial regulatory proteins, tetR family LSO59_16690 PF12697 Alpha/beta hydrolase family LSO59_16705 PF06574 FAD synthetase LSO59_16705 PF01687 Riboflavin kinase LSO59_16710 PF08264 Anticodon-binding domain of tRNA LSO59_16710 PF00133 tRNA synthetases class I (I, L, M and V) LSO59_16710 PF06827 Zinc finger found in FPG and IleRS LSO59_16715 PF01252 Signal peptidase (SPase) II LSO59_16720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LSO59_16795 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LSO59_16800 PF07859 alpha/beta hydrolase fold LSO59_16820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_16820 PF03466 LysR substrate binding domain LSO59_16825 PF01025 GrpE LSO59_16830 PF00012 Hsp70 protein LSO59_16845 PF13406 Transglycosylase SLT domain LSO59_16850 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LSO59_16850 PF02222 ATP-grasp domain LSO59_16855 PF00731 AIR carboxylase LSO59_16865 PF08245 Mur ligase middle domain LSO59_16865 PF02875 Mur ligase family, glutamate ligase domain LSO59_16865 PF01225 Mur ligase family, catalytic domain LSO59_16890 PF03741 Integral membrane protein TerC family LSO59_16900 PF01979 Amidohydrolase family LSO59_16905 PF00156 Phosphoribosyl transferase domain LSO59_16915 PF13098 Thioredoxin-like domain LSO59_16915 PF10411 Disulfide bond isomerase protein N-terminus LSO59_16920 PF10396 GTP-binding protein TrmE N-terminus LSO59_16920 PF12631 MnmE helical domain LSO59_16920 PF01926 50S ribosome-binding GTPase LSO59_16925 PF14849 YidC periplasmic domain LSO59_16925 PF02096 60Kd inner membrane protein LSO59_16930 PF01809 Putative membrane protein insertion efficiency factor LSO59_16935 PF00825 Ribonuclease P LSO59_16940 PF00468 Ribosomal protein L34 LSO59_17100 PF00580 UvrD/REP helicase N-terminal domain LSO59_17100 PF13361 UvrD-like helicase C-terminal domain LSO59_17130 PF13614 AAA domain LSO59_17135 PF17762 HTH domain found in ParB protein LSO59_17135 PF02195 ParB-like nuclease domain LSO59_17150 PF00437 Type II/IV secretion system protein LSO59_17270 PF13610 DDE domain LSO59_17275 PF01636 Phosphotransferase enzyme family LSO59_17280 PF13610 DDE domain LSO59_17295 PF00893 Small Multidrug Resistance protein LSO59_17300 PF00809 Pterin binding enzyme LSO59_17310 PF12826 Helix-hairpin-helix motif LSO59_17310 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LSO59_17310 PF03120 NAD-dependent DNA ligase OB-fold domain LSO59_17310 PF01653 NAD-dependent DNA ligase adenylation domain LSO59_17310 PF00533 BRCA1 C Terminus (BRCT) domain LSO59_17325 PF13495 Phage integrase, N-terminal SAM-like domain LSO59_17325 PF00589 Phage integrase family LSO59_17335 PF00893 Small Multidrug Resistance protein LSO59_17345 PF00132 Bacterial transferase hexapeptide (six repeats) LSO59_17350 PF00893 Small Multidrug Resistance protein LSO59_17355 PF00809 Pterin binding enzyme LSO59_17365 PF13610 DDE domain LSO59_17435 PF13005 zinc-finger binding domain of transposase IS66 LSO59_17435 PF13817 IS66 C-terminal element LSO59_17435 PF13007 Transposase C of IS166 homeodomain LSO59_17435 PF03050 Transposase IS66 family LSO59_17505 PF00717 Peptidase S24-like LSO59_17510 PF11799 impB/mucB/samB family C-terminal domain LSO59_17510 PF11798 IMS family HHH motif LSO59_17510 PF00817 impB/mucB/samB family LSO59_17510 PF13438 Domain of unknown function (DUF4113) LSO59_17520 PF13495 Phage integrase, N-terminal SAM-like domain LSO59_17520 PF00589 Phage integrase family LSO59_17535 PF00893 Small Multidrug Resistance protein LSO59_17540 PF00809 Pterin binding enzyme LSO59_17585 PF13936 Helix-turn-helix domain LSO59_17585 PF00665 Integrase core domain LSO59_17605 PF00313 'Cold-shock' DNA-binding domain LSO59_17645 PF17841 BID domain of Bartonella effector protein (Bep) LSO59_17645 PF02661 Fic/DOC family LSO59_17695 PF13737 Transposase DDE domain LSO59_17725 PF00271 Helicase conserved C-terminal domain LSO59_17725 PF18337 RapA N-terminal Tudor like domain LSO59_17725 PF18339 RapA N-terminal Tudor like domain 1 LSO59_17725 PF00176 SNF2 family N-terminal domain LSO59_17725 PF12137 RNA polymerase recycling family C-terminal LSO59_17775 PF00565 Staphylococcal nuclease homologue LSO59_17785 PF01555 DNA methylase LSO59_17790 PF04851 Type III restriction enzyme, res subunit LSO59_17835 PF01131 DNA topoisomerase LSO59_17835 PF01751 Toprim domain LSO59_17835 PF01396 Topoisomerase DNA binding C4 zinc finger LSO59_17910 PF02899 Phage integrase, N-terminal SAM-like domain LSO59_17910 PF00589 Phage integrase family LSO59_17940 PF01520 N-acetylmuramoyl-L-alanine amidase LSO59_17940 PF08239 Bacterial SH3 domain LSO59_18005 PF13737 Transposase DDE domain LSO59_18010 PF00962 Adenosine/AMP deaminase LSO59_18025 PF01348 Type II intron maturase LSO59_18025 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LSO59_18050 PF00005 ABC transporter LSO59_18050 PF12848 ABC transporter LSO59_18055 PF01636 Phosphotransferase enzyme family LSO59_18060 PF02796 Helix-turn-helix domain of resolvase LSO59_18060 PF00239 Resolvase, N terminal domain LSO59_18070 PF00512 His Kinase A (phospho-acceptor) domain LSO59_18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_18070 PF00672 HAMP domain LSO59_18075 PF00072 Response regulator receiver domain LSO59_18075 PF00486 Transcriptional regulatory protein, C terminal LSO59_18080 PF00529 HlyD membrane-fusion protein of T1SS LSO59_18080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_18085 PF00873 AcrB/AcrD/AcrF family LSO59_18090 PF02321 Outer membrane efflux protein LSO59_18095 PF07690 Major Facilitator Superfamily LSO59_18100 PF00989 PAS fold LSO59_18100 PF16736 Single Cache-like LSO59_18100 PF00512 His Kinase A (phospho-acceptor) domain LSO59_18100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_18105 PF13610 DDE domain LSO59_18145 PF01435 Peptidase family M48 LSO59_18160 PF02522 Aminoglycoside 3-N-acetyltransferase LSO59_18340 PF00905 Penicillin binding protein transpeptidase domain LSO59_18360 PF12833 Helix-turn-helix domain LSO59_18385 PF13610 DDE domain LSO59_18400 PF00873 AcrB/AcrD/AcrF family LSO59_18405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LSO59_18425 PF13610 DDE domain LSO59_18430 PF01113 Dihydrodipicolinate reductase, N-terminus LSO59_18435 PF07690 Major Facilitator Superfamily LSO59_18465 PF13610 DDE domain LSO59_18470 PF00512 His Kinase A (phospho-acceptor) domain LSO59_18470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_18470 PF00672 HAMP domain LSO59_18480 PF00551 Formyl transferase LSO59_18490 PF01266 FAD dependent oxidoreductase LSO59_18495 PF04267 Sarcosine oxidase, delta subunit family LSO59_18500 PF01571 Aminomethyltransferase folate-binding domain LSO59_18500 PF08669 Glycine cleavage T-protein C-terminal barrel domain LSO59_18500 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_18500 PF17806 Sarcosine oxidase A3 domain LSO59_18510 PF00909 Ammonium Transporter Family LSO59_18515 PF00909 Ammonium Transporter Family LSO59_18525 PF00120 Glutamine synthetase, catalytic domain LSO59_18535 PF01493 GXGXG motif LSO59_18540 PF01645 Conserved region in glutamate synthase LSO59_18545 PF13356 Arm DNA-binding domain LSO59_18545 PF00589 Phage integrase family LSO59_18685 PF13737 Transposase DDE domain LSO59_18780 PF17755 UvrA DNA-binding domain LSO59_18790 PF00107 Zinc-binding dehydrogenase LSO59_18790 PF08240 Alcohol dehydrogenase GroES-like domain LSO59_18795 PF16925 Tetracyclin repressor-like, C-terminal domain LSO59_18795 PF00440 Bacterial regulatory proteins, tetR family LSO59_18820 PF13359 DDE superfamily endonuclease LSO59_18820 PF13613 Helix-turn-helix of DDE superfamily endonuclease LSO59_18840 PF02601 Exonuclease VII, large subunit LSO59_18840 PF13742 OB-fold nucleic acid binding domain LSO59_18855 PF02358 Trehalose-phosphatase LSO59_18860 PF00982 Glycosyltransferase family 20 LSO59_18865 PF07690 Major Facilitator Superfamily LSO59_18910 PF04239 Protein of unknown function (DUF421) LSO59_18915 PF06628 Catalase-related immune-responsive LSO59_18915 PF00199 Catalase LSO59_18915 PF18011 C-terminal domain found in long catalases LSO59_18930 PF00717 Peptidase S24-like LSO59_18930 PF01726 LexA DNA binding domain LSO59_18935 PF11799 impB/mucB/samB family C-terminal domain LSO59_18935 PF13438 Domain of unknown function (DUF4113) LSO59_18935 PF00817 impB/mucB/samB family LSO59_18955 PF13737 Transposase DDE domain LSO59_18995 PF13614 AAA domain LSO59_19000 PF02195 ParB-like nuclease domain LSO59_19000 PF17762 HTH domain found in ParB protein LSO59_19065 PF08669 Glycine cleavage T-protein C-terminal barrel domain LSO59_19065 PF01571 Aminomethyltransferase folate-binding domain LSO59_19070 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LSO59_19070 PF07730 Histidine kinase LSO59_19070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_19070 PF00672 HAMP domain LSO59_19075 PF00072 Response regulator receiver domain LSO59_19075 PF00196 Bacterial regulatory proteins, luxR family LSO59_19095 PF00175 Oxidoreductase NAD-binding domain LSO59_19095 PF00111 2Fe-2S iron-sulfur cluster binding domain LSO59_19095 PF00970 Oxidoreductase FAD-binding domain LSO59_19105 PF08669 Glycine cleavage T-protein C-terminal barrel domain LSO59_19105 PF01571 Aminomethyltransferase folate-binding domain LSO59_19110 PF00543 Nitrogen regulatory protein P-II LSO59_19115 PF00551 Formyl transferase LSO59_19120 PF00893 Small Multidrug Resistance protein LSO59_19190 PF02661 Fic/DOC family LSO59_19225 PF11799 impB/mucB/samB family C-terminal domain LSO59_19225 PF00817 impB/mucB/samB family LSO59_19225 PF13438 Domain of unknown function (DUF4113) LSO59_19230 PF00717 Peptidase S24-like LSO59_19230 PF01726 LexA DNA binding domain LSO59_19265 PF04233 Phage Mu protein F like protein LSO59_19270 PF13356 Arm DNA-binding domain LSO59_19270 PF00589 Phage integrase family LSO59_19275 PF00892 EamA-like transporter family LSO59_19280 PF00324 Amino acid permease LSO59_19285 PF01266 FAD dependent oxidoreductase LSO59_19295 PF00155 Aminotransferase class I and II LSO59_19295 PF00392 Bacterial regulatory proteins, gntR family LSO59_19330 PF01590 GAF domain LSO59_19330 PF00158 Sigma-54 interaction domain LSO59_19340 PF00795 Carbon-nitrogen hydrolase LSO59_19355 PF02769 AIR synthase related protein, C-terminal domain LSO59_19355 PF00586 AIR synthase related protein, N-terminal domain LSO59_19375 PF00004 ATPase family associated with various cellular activities (AAA) LSO59_19375 PF07724 AAA domain (Cdc48 subfamily) LSO59_19375 PF02861 Clp amino terminal domain, pathogenicity island component LSO59_19375 PF10431 C-terminal, D2-small domain, of ClpB protein LSO59_19375 PF17871 AAA lid domain LSO59_19420 PF13180 PDZ domain LSO59_19425 PF00999 Sodium/hydrogen exchanger family LSO59_19425 PF02254 TrkA-N domain LSO59_19440 PF12795 Mechanosensitive ion channel porin domain LSO59_19440 PF12794 Mechanosensitive ion channel inner membrane domain 1 LSO59_19440 PF00924 Mechanosensitive ion channel LSO59_19450 PF13610 DDE domain LSO59_19455 PF13411 MerR HTH family regulatory protein LSO59_19460 PF01545 Cation efflux family LSO59_19470 PF07670 Nucleoside recognition LSO59_19470 PF07664 Ferrous iron transport protein B C terminus LSO59_19470 PF02421 Ferrous iron transport protein B LSO59_19480 PF00394 Multicopper oxidase LSO59_19480 PF07731 Multicopper oxidase LSO59_19480 PF07732 Multicopper oxidase LSO59_19490 PF00072 Response regulator receiver domain LSO59_19490 PF00486 Transcriptional regulatory protein, C terminal LSO59_19495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LSO59_19495 PF00672 HAMP domain LSO59_19495 PF00512 His Kinase A (phospho-acceptor) domain LSO59_19555 PF13737 Transposase DDE domain LSO59_19565 PF08240 Alcohol dehydrogenase GroES-like domain LSO59_19565 PF00107 Zinc-binding dehydrogenase LSO59_19570 PF02583 Metal-sensitive transcriptional repressor LSO59_19575 PF13737 Transposase DDE domain LSO59_19580 PF00355 Rieske [2Fe-2S] domain LSO59_19585 PF03171 2OG-Fe(II) oxygenase superfamily LSO59_19585 PF14226 non-haem dioxygenase in morphine synthesis N-terminal LSO59_19600 PF03466 LysR substrate binding domain LSO59_19600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_19615 PF03502 Nucleoside-specific channel-forming protein, Tsx LSO59_19620 PF00860 Permease family LSO59_19630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LSO59_19630 PF03466 LysR substrate binding domain LSO59_19640 PF13610 DDE domain LSO59_19650 PF07992 Pyridine nucleotide-disulphide oxidoreductase LSO59_19655 PF03358 NADPH-dependent FMN reductase LSO59_19660 PF01758 Sodium Bile acid symporter family LSO59_19670 PF01022 Bacterial regulatory protein, arsR family LSO59_19675 PF03960 ArsC family LSO59_19690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LSO59_19695 PF01051 Initiator Replication protein LSO59_19700 PF01446 Replication protein