locus-tag class description RYU24_00010 PF00308 Bacterial dnaA protein RYU24_00010 PF08299 Bacterial dnaA protein helix-turn-helix RYU24_00010 PF11638 DnaA N-terminal domain RYU24_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain RYU24_00020 PF02767 DNA polymerase III beta subunit, central domain RYU24_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain RYU24_00030 PF02463 RecF/RecN/SMC N terminal domain RYU24_00040 PF01751 Toprim domain RYU24_00040 PF18053 DNA gyrase B subunit insert domain RYU24_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_00040 PF00204 DNA gyrase B RYU24_00040 PF00986 DNA gyrase B subunit, carboxyl terminus RYU24_00060 PF08240 Alcohol dehydrogenase GroES-like domain RYU24_00060 PF13823 Alcohol dehydrogenase GroES-associated RYU24_00060 PF00107 Zinc-binding dehydrogenase RYU24_00070 PF00005 ABC transporter RYU24_00070 PF12848 ABC transporter RYU24_00110 PF01521 Iron-sulphur cluster biosynthesis RYU24_00150 PF00012 Hsp70 protein RYU24_00160 PF01025 GrpE RYU24_00180 PF07859 alpha/beta hydrolase fold RYU24_00210 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RYU24_00220 PF07690 Major Facilitator Superfamily RYU24_00230 PF07690 Major Facilitator Superfamily RYU24_00260 PF12796 Ankyrin repeats (3 copies) RYU24_00270 PF01965 DJ-1/PfpI family RYU24_00290 PF00171 Aldehyde dehydrogenase family RYU24_00300 PF00209 Sodium:neurotransmitter symporter family RYU24_00310 PF02535 ZIP Zinc transporter RYU24_00320 PF01189 16S rRNA methyltransferase RsmB/F RYU24_00320 PF01029 NusB family RYU24_00330 PF02911 Formyl transferase, C-terminal domain RYU24_00330 PF00551 Formyl transferase RYU24_00340 PF00920 Dehydratase family RYU24_00350 PF00920 Dehydratase family RYU24_00390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_00390 PF03466 LysR substrate binding domain RYU24_00400 PF00860 Permease family RYU24_00410 PF00311 Phosphoenolpyruvate carboxylase RYU24_00420 PF00440 Bacterial regulatory proteins, tetR family RYU24_00430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RYU24_00440 PF00873 AcrB/AcrD/AcrF family RYU24_00460 PF01556 DnaJ C terminal domain RYU24_00460 PF00226 DnaJ domain RYU24_00460 PF00684 DnaJ central domain RYU24_00490 PF12323 Helix-turn-helix domain RYU24_00490 PF01385 Probable transposase RYU24_00490 PF07282 Putative transposase DNA-binding domain RYU24_00500 PF05173 Dihydrodipicolinate reductase, C-terminus RYU24_00500 PF01113 Dihydrodipicolinate reductase, N-terminus RYU24_00520 PF13006 Insertion element 4 transposase N-terminal RYU24_00520 PF01609 Transposase DDE domain RYU24_00520 PF13006 Insertion element 4 transposase N-terminal RYU24_00520 PF01609 Transposase DDE domain RYU24_00530 PF07690 Major Facilitator Superfamily RYU24_00540 PF00248 Aldo/keto reductase family RYU24_00550 PF03466 LysR substrate binding domain RYU24_00550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_00560 PF00107 Zinc-binding dehydrogenase RYU24_00560 PF08240 Alcohol dehydrogenase GroES-like domain RYU24_00570 PF03352 Methyladenine glycosylase RYU24_00590 PF01551 Peptidase family M23 RYU24_00600 PF10576 Iron-sulfur binding domain of endonuclease III RYU24_00600 PF14815 NUDIX domain RYU24_00600 PF00730 HhH-GPD superfamily base excision DNA repair protein RYU24_00600 PF00633 Helix-hairpin-helix motif RYU24_00630 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RYU24_00630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RYU24_00640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RYU24_00640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RYU24_00650 PF13807 G-rich domain on putative tyrosine kinase RYU24_00650 PF13614 AAA domain RYU24_00650 PF02706 Chain length determinant protein RYU24_00660 PF01451 Low molecular weight phosphotyrosine protein phosphatase RYU24_00670 PF02563 Polysaccharide biosynthesis/export protein RYU24_00670 PF10531 SLBB domain RYU24_00670 PF18412 Outer-membrane lipoprotein Wza C-terminal domain RYU24_00680 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RYU24_00680 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RYU24_00680 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RYU24_00690 PF01370 NAD dependent epimerase/dehydratase family RYU24_00720 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_00730 PF00534 Glycosyl transferases group 1 RYU24_00730 PF13439 Glycosyltransferase Family 4 RYU24_00740 PF13439 Glycosyltransferase Family 4 RYU24_00740 PF00534 Glycosyl transferases group 1 RYU24_00750 PF00534 Glycosyl transferases group 1 RYU24_00750 PF13477 Glycosyl transferase 4-like RYU24_00760 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_00760 PF14602 Hexapeptide repeat of succinyl-transferase RYU24_00760 PF12464 Maltose acetyltransferase RYU24_00770 PF02397 Bacterial sugar transferase RYU24_00780 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_00780 PF17836 PglD N-terminal domain RYU24_00780 PF14602 Hexapeptide repeat of succinyl-transferase RYU24_00790 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RYU24_00800 PF02719 Polysaccharide biosynthesis protein RYU24_00830 PF00535 Glycosyl transferase family 2 RYU24_00860 PF13439 Glycosyltransferase Family 4 RYU24_00860 PF00534 Glycosyl transferases group 1 RYU24_00880 PF02719 Polysaccharide biosynthesis protein RYU24_00880 PF08485 Polysaccharide biosynthesis protein C-terminal RYU24_00890 PF01370 NAD dependent epimerase/dehydratase family RYU24_00900 PF02350 UDP-N-acetylglucosamine 2-epimerase RYU24_00910 PF13579 Glycosyl transferase 4-like domain RYU24_00920 PF02397 Bacterial sugar transferase RYU24_00930 PF00483 Nucleotidyl transferase RYU24_00940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RYU24_00940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RYU24_00940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RYU24_00950 PF00342 Phosphoglucose isomerase RYU24_00960 PF16363 GDP-mannose 4,6 dehydratase RYU24_00970 PF14052 Capsule assembly protein Wzi RYU24_00980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RYU24_00980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RYU24_00980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RYU24_00980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RYU24_01000 PF15978 Tn7-like transposition protein D RYU24_01000 PF06527 TniQ RYU24_01010 PF11426 Tn7 transposition regulator TnsC RYU24_01010 PF13401 AAA domain RYU24_01020 PF00665 Integrase core domain RYU24_01030 PF08721 TnsA endonuclease C terminal RYU24_01030 PF08722 TnsA endonuclease N terminal RYU24_01040 PF13737 Transposase DDE domain RYU24_01050 PF01380 SIS domain RYU24_01060 PF14602 Hexapeptide repeat of succinyl-transferase RYU24_01060 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_01060 PF12804 MobA-like NTP transferase domain RYU24_01070 PF04608 Phosphatidylglycerophosphatase A RYU24_01080 PF02769 AIR synthase related protein, C-terminal domain RYU24_01080 PF00586 AIR synthase related protein, N-terminal domain RYU24_01090 PF01029 NusB family RYU24_01100 PF00885 6,7-dimethyl-8-ribityllumazine synthase RYU24_01110 PF00925 GTP cyclohydrolase II RYU24_01110 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RYU24_01120 PF00171 Aldehyde dehydrogenase family RYU24_01140 PF03641 Possible lysine decarboxylase RYU24_01150 PF09905 DNA-binding protein VF530 RYU24_01170 PF16655 PhoD-like phosphatase, N-terminal domain RYU24_01170 PF09423 PhoD-like phosphatase RYU24_01180 PF17941 Polyphosphate kinase C-terminal domain 1 RYU24_01180 PF13089 Polyphosphate kinase N-terminal domain RYU24_01180 PF13090 Polyphosphate kinase C-terminal domain 2 RYU24_01180 PF02503 Polyphosphate kinase middle domain RYU24_01200 PF00149 Calcineurin-like phosphoesterase RYU24_01200 PF02872 5'-nucleotidase, C-terminal domain RYU24_01230 PF00534 Glycosyl transferases group 1 RYU24_01230 PF13439 Glycosyltransferase Family 4 RYU24_01300 PF13340 Putative transposase of IS4/5 family (DUF4096) RYU24_01320 PF00817 impB/mucB/samB family RYU24_01320 PF13438 Domain of unknown function (DUF4113) RYU24_01320 PF11799 impB/mucB/samB family C-terminal domain RYU24_01330 PF00717 Peptidase S24-like RYU24_01340 PF05524 PEP-utilising enzyme, N-terminal RYU24_01340 PF00391 PEP-utilising enzyme, mobile domain RYU24_01340 PF02896 PEP-utilising enzyme, TIM barrel domain RYU24_01340 PF00381 PTS HPr component phosphorylation site RYU24_01340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RYU24_01350 PF00294 pfkB family carbohydrate kinase RYU24_01360 PF02378 Phosphotransferase system, EIIC RYU24_01360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RYU24_01380 PF00176 SNF2 family N-terminal domain RYU24_01380 PF00271 Helicase conserved C-terminal domain RYU24_01380 PF12419 SNF2 Helicase protein RYU24_01390 PF07804 HipA-like C-terminal domain RYU24_01390 PF13657 HipA N-terminal domain RYU24_01410 PF00694 Aconitase C-terminal domain RYU24_01410 PF00330 Aconitase family (aconitate hydratase) RYU24_01430 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_01430 PF13359 DDE superfamily endonuclease RYU24_01440 PF03050 Transposase IS66 family RYU24_01440 PF13007 Transposase C of IS166 homeodomain RYU24_01440 PF13005 zinc-finger binding domain of transposase IS66 RYU24_01440 PF13817 IS66 C-terminal element RYU24_01450 PF00199 Catalase RYU24_01480 PF00296 Luciferase-like monooxygenase RYU24_01500 PF07120 Protein of unknown function (DUF1376) RYU24_01570 PF13614 AAA domain RYU24_01600 PF09335 SNARE associated Golgi protein RYU24_01610 PF00117 Glutamine amidotransferase class-I RYU24_01610 PF02540 NAD synthase RYU24_01610 PF00958 GMP synthase C terminal domain RYU24_01620 PF14338 Mrr N-terminal domain RYU24_01620 PF04471 Restriction endonuclease RYU24_01630 PF00990 Diguanylate cyclase, GGDEF domain RYU24_01640 PF17158 Membrane-associated sensor, integral membrane domain RYU24_01640 PF00990 Diguanylate cyclase, GGDEF domain RYU24_01650 PF05726 Pirin C-terminal cupin domain RYU24_01650 PF02678 Pirin RYU24_01680 PF00512 His Kinase A (phospho-acceptor) domain RYU24_01680 PF00989 PAS fold RYU24_01680 PF11808 Phosphate regulon sensor protein PhoR RYU24_01680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_01690 PF00072 Response regulator receiver domain RYU24_01690 PF00486 Transcriptional regulatory protein, C terminal RYU24_01710 PF00106 short chain dehydrogenase RYU24_01730 PF13737 Transposase DDE domain RYU24_01740 PF00296 Luciferase-like monooxygenase RYU24_01750 PF00296 Luciferase-like monooxygenase RYU24_01760 PF01554 MatE RYU24_01770 PF00155 Aminotransferase class I and II RYU24_01780 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RYU24_01780 PF04717 Type VI secretion system, phage-baseplate injector RYU24_01780 PF13296 Putative type VI secretion system Rhs element Vgr RYU24_01790 PF08239 Bacterial SH3 domain RYU24_01790 PF00877 NlpC/P60 family RYU24_01790 PF01476 LysM domain RYU24_01810 PF04261 Dyp-type peroxidase family RYU24_01820 PF01810 LysE type translocator RYU24_01830 PF04463 Protein of unknown function (DUF523) RYU24_01840 PF00950 ABC 3 transport family RYU24_01850 PF00005 ABC transporter RYU24_01890 PF00119 ATP synthase A chain RYU24_01900 PF00137 ATP synthase subunit C RYU24_01910 PF00430 ATP synthase B/B' CF(0) RYU24_01920 PF00213 ATP synthase delta (OSCP) subunit RYU24_01930 PF00306 ATP synthase alpha/beta chain, C terminal domain RYU24_01930 PF02874 ATP synthase alpha/beta family, beta-barrel domain RYU24_01930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RYU24_01940 PF00231 ATP synthase RYU24_01950 PF02874 ATP synthase alpha/beta family, beta-barrel domain RYU24_01950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RYU24_01960 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RYU24_01990 PF00171 Aldehyde dehydrogenase family RYU24_02020 PF00255 Glutathione peroxidase RYU24_02030 PF00255 Glutathione peroxidase RYU24_02040 PF00892 EamA-like transporter family RYU24_02050 PF01300 Telomere recombination RYU24_02060 PF17782 DprA winged helix domain RYU24_02060 PF02481 DNA recombination-mediator protein A RYU24_02080 PF01327 Polypeptide deformylase RYU24_02110 PF07690 Major Facilitator Superfamily RYU24_02120 PF11842 Domain of unknown function (DUF3362) RYU24_02120 PF04055 Radical SAM superfamily RYU24_02120 PF08497 Radical SAM N-terminal RYU24_02150 PF07690 Major Facilitator Superfamily RYU24_02150 PF00083 Sugar (and other) transporter RYU24_02160 PF00817 impB/mucB/samB family RYU24_02160 PF11799 impB/mucB/samB family C-terminal domain RYU24_02160 PF11798 IMS family HHH motif RYU24_02170 PF01183 Glycosyl hydrolases family 25 RYU24_02180 PF07690 Major Facilitator Superfamily RYU24_02200 PF03641 Possible lysine decarboxylase RYU24_02210 PF03741 Integral membrane protein TerC family RYU24_02210 PF03471 Transporter associated domain RYU24_02220 PF02810 SEC-C motif RYU24_02230 PF03458 UPF0126 domain RYU24_02240 PF07690 Major Facilitator Superfamily RYU24_02250 PF00521 DNA gyrase/topoisomerase IV, subunit A RYU24_02250 PF03989 DNA gyrase C-terminal domain, beta-propeller RYU24_02260 PF00501 AMP-binding enzyme RYU24_02260 PF13193 AMP-binding enzyme C-terminal domain RYU24_02290 PF00719 Inorganic pyrophosphatase RYU24_02320 PF13335 Magnesium chelatase, subunit ChlI C-terminal RYU24_02320 PF01078 Magnesium chelatase, subunit ChlI RYU24_02340 PF00665 Integrase core domain RYU24_02450 PF13335 Magnesium chelatase, subunit ChlI C-terminal RYU24_02450 PF01078 Magnesium chelatase, subunit ChlI RYU24_02470 PF00543 Nitrogen regulatory protein P-II RYU24_02480 PF00909 Ammonium Transporter Family RYU24_02490 PF03477 ATP cone domain RYU24_02500 PF01872 RibD C-terminal domain RYU24_02500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RYU24_02520 PF00677 Lumazine binding domain RYU24_02530 PF09335 SNARE associated Golgi protein RYU24_02560 PF00883 Cytosol aminopeptidase family, catalytic domain RYU24_02560 PF02789 Cytosol aminopeptidase family, N-terminal domain RYU24_02570 PF03739 Lipopolysaccharide export system permease LptF/LptG RYU24_02580 PF03739 Lipopolysaccharide export system permease LptF/LptG RYU24_02590 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RYU24_02590 PF01676 Metalloenzyme superfamily RYU24_02600 PF03572 Peptidase family S41 RYU24_02600 PF00595 PDZ domain RYU24_02610 PF00072 Response regulator receiver domain RYU24_02610 PF02954 Bacterial regulatory protein, Fis family RYU24_02610 PF00158 Sigma-54 interaction domain RYU24_02620 PF00512 His Kinase A (phospho-acceptor) domain RYU24_02620 PF07689 KaiB domain RYU24_02620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_02630 PF00196 Bacterial regulatory proteins, luxR family RYU24_02630 PF00072 Response regulator receiver domain RYU24_02640 PF00768 D-alanyl-D-alanine carboxypeptidase RYU24_02650 PF00291 Pyridoxal-phosphate dependent enzyme RYU24_02660 PF01842 ACT domain RYU24_02660 PF00742 Homoserine dehydrogenase RYU24_02660 PF03447 Homoserine dehydrogenase, NAD binding domain RYU24_02670 PF10411 Disulfide bond isomerase protein N-terminus RYU24_02670 PF13098 Thioredoxin-like domain RYU24_02680 PF02899 Phage integrase, N-terminal SAM-like domain RYU24_02680 PF00589 Phage integrase family RYU24_02700 PF07670 Nucleoside recognition RYU24_02700 PF07664 Ferrous iron transport protein B C terminus RYU24_02700 PF02421 Ferrous iron transport protein B RYU24_02720 PF02875 Mur ligase family, glutamate ligase domain RYU24_02720 PF08245 Mur ligase middle domain RYU24_02730 PF01098 Cell cycle protein RYU24_02740 PF00749 tRNA synthetases class I (E and Q), catalytic domain RYU24_02750 PF01258 Prokaryotic dksA/traR C4-type zinc finger RYU24_02760 PF00149 Calcineurin-like phosphoesterase RYU24_02770 PF00293 NUDIX domain RYU24_02780 PF13667 ThiC-associated domain RYU24_02780 PF01964 Radical SAM ThiC family RYU24_02800 PF02321 Outer membrane efflux protein RYU24_02810 PF01895 PhoU domain RYU24_02820 PF00005 ABC transporter RYU24_02820 PF00664 ABC transporter transmembrane region RYU24_02840 PF03652 Holliday junction resolvase RYU24_02850 PF02622 Uncharacterized ACR, COG1678 RYU24_02860 PF13737 Transposase DDE domain RYU24_02910 PF02463 RecF/RecN/SMC N terminal domain RYU24_02920 PF06865 Pyrimidine/purine nucleoside phosphorylase RYU24_02930 PF08032 RNA 2'-O ribose methyltransferase substrate binding RYU24_02930 PF00588 SpoU rRNA Methylase family RYU24_02950 PF01121 Dephospho-CoA kinase RYU24_02960 PF06750 Bacterial Peptidase A24 N-terminal domain RYU24_02960 PF01478 Type IV leader peptidase family RYU24_02970 PF00482 Type II secretion system (T2SS), protein F RYU24_02980 PF00437 Type II/IV secretion system protein RYU24_02980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RYU24_02990 PF00121 Triosephosphate isomerase RYU24_03000 PF03840 Preprotein translocase SecG subunit RYU24_03010 PF02576 RimP N-terminal domain RYU24_03010 PF17384 RimP C-terminal SH3 domain RYU24_03020 PF13184 NusA-like KH domain RYU24_03020 PF08529 NusA N-terminal domain RYU24_03020 PF00575 S1 RNA binding domain RYU24_03030 PF00009 Elongation factor Tu GTP binding domain RYU24_03030 PF11987 Translation-initiation factor 2 RYU24_03030 PF08364 Bacterial translation initiation factor IF-2 associated region RYU24_03030 PF04760 Translation initiation factor IF-2, N-terminal region RYU24_03040 PF02033 Ribosome-binding factor A RYU24_03050 PF03334 Na+/H+ antiporter subunit RYU24_03060 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RYU24_03070 PF01899 Na+/H+ ion antiporter subunit RYU24_03080 PF00361 Proton-conducting membrane transporter RYU24_03090 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RYU24_03100 PF13244 Domain of unknown function (DUF4040) RYU24_03100 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter RYU24_03100 PF00361 Proton-conducting membrane transporter RYU24_03100 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RYU24_03130 PF01502 Phosphoribosyl-AMP cyclohydrolase RYU24_03140 PF00106 short chain dehydrogenase RYU24_03150 PF01053 Cys/Met metabolism PLP-dependent enzyme RYU24_03160 PF12848 ABC transporter RYU24_03160 PF00005 ABC transporter RYU24_03180 PF13340 Putative transposase of IS4/5 family (DUF4096) RYU24_03220 PF07715 TonB-dependent Receptor Plug Domain RYU24_03220 PF00593 TonB dependent receptor RYU24_03250 PF00749 tRNA synthetases class I (E and Q), catalytic domain RYU24_03300 PF01795 MraW methylase family RYU24_03320 PF03717 Penicillin-binding Protein dimerisation domain RYU24_03320 PF00905 Penicillin binding protein transpeptidase domain RYU24_03330 PF01225 Mur ligase family, catalytic domain RYU24_03330 PF02875 Mur ligase family, glutamate ligase domain RYU24_03330 PF08245 Mur ligase middle domain RYU24_03340 PF01225 Mur ligase family, catalytic domain RYU24_03340 PF02875 Mur ligase family, glutamate ligase domain RYU24_03340 PF08245 Mur ligase middle domain RYU24_03350 PF00953 Glycosyl transferase family 4 RYU24_03360 PF13847 Methyltransferase domain RYU24_03370 PF00905 Penicillin binding protein transpeptidase domain RYU24_03370 PF00912 Transglycosylase RYU24_03370 PF17092 Penicillin-binding protein OB-like domain RYU24_03380 PF11104 Type IV pilus assembly protein PilM; RYU24_03390 PF05137 Fimbrial assembly protein (PilN) RYU24_03400 PF04350 Pilus assembly protein, PilO RYU24_03420 PF11741 AMIN domain RYU24_03420 PF00263 Bacterial type II and III secretion system protein RYU24_03420 PF03958 Bacterial type II/III secretion system short domain RYU24_03420 PF07660 Secretin and TonB N terminus short domain RYU24_03430 PF01202 Shikimate kinase RYU24_03440 PF01761 3-dehydroquinate synthase RYU24_03460 PF00310 Glutamine amidotransferases class-II RYU24_03460 PF04898 Glutamate synthase central domain RYU24_03460 PF01645 Conserved region in glutamate synthase RYU24_03460 PF01493 GXGXG motif RYU24_03470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RYU24_03470 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_03480 PF04011 LemA family RYU24_03570 PF07963 Prokaryotic N-terminal methylation motif RYU24_03570 PF00114 Pilin (bacterial filament) RYU24_03590 PF07963 Prokaryotic N-terminal methylation motif RYU24_03590 PF00114 Pilin (bacterial filament) RYU24_03610 PF15864 Protein glycosylation ligase RYU24_03610 PF04932 O-Antigen ligase RYU24_03610 PF11846 Virulence factor membrane-bound polymerase, C-terminal RYU24_03620 PF00210 Ferritin-like domain RYU24_03630 PF04324 BFD-like [2Fe-2S] binding domain RYU24_03650 PF01042 Endoribonuclease L-PSP RYU24_03660 PF07282 Putative transposase DNA-binding domain RYU24_03660 PF01385 Probable transposase RYU24_03660 PF12323 Helix-turn-helix domain RYU24_03670 PF04607 Region found in RelA / SpoT proteins RYU24_03670 PF02824 TGS domain RYU24_03670 PF13291 ACT domain RYU24_03680 PF01192 RNA polymerase Rpb6 RYU24_03690 PF00625 Guanylate kinase RYU24_03700 PF02401 LytB protein RYU24_03710 PF00114 Pilin (bacterial filament) RYU24_03710 PF07963 Prokaryotic N-terminal methylation motif RYU24_03780 PF00886 Ribosomal protein S16 RYU24_03790 PF01782 RimM N-terminal domain RYU24_03790 PF05239 PRC-barrel domain RYU24_03800 PF01746 tRNA (Guanine-1)-methyltransferase RYU24_03810 PF01245 Ribosomal protein L19 RYU24_03820 PF00561 alpha/beta hydrolase fold RYU24_03830 PF00561 alpha/beta hydrolase fold RYU24_03840 PF03280 Proteobacterial lipase chaperone protein RYU24_03850 PF16198 tRNA pseudouridylate synthase B C-terminal domain RYU24_03850 PF09157 Pseudouridine synthase II TruB, C-terminal RYU24_03850 PF01509 TruB family pseudouridylate synthase (N terminal domain) RYU24_03860 PF01925 Sulfite exporter TauE/SafE RYU24_03880 PF00892 EamA-like transporter family RYU24_03910 PF00892 EamA-like transporter family RYU24_03930 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RYU24_03930 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RYU24_03940 PF02913 FAD linked oxidases, C-terminal domain RYU24_03940 PF01565 FAD binding domain RYU24_03970 PF07690 Major Facilitator Superfamily RYU24_03980 PF12823 Domain of unknown function (DUF3817) RYU24_03990 PF12805 FUSC-like inner membrane protein yccS RYU24_04000 PF00080 Copper/zinc superoxide dismutase (SODC) RYU24_04010 PF01594 AI-2E family transporter RYU24_04020 PF13614 AAA domain RYU24_04050 PF01209 ubiE/COQ5 methyltransferase family RYU24_04080 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RYU24_04090 PF01197 Ribosomal protein L31 RYU24_04100 PF03109 ABC1 family RYU24_04120 PF01554 MatE RYU24_04140 PF06969 HemN C-terminal domain RYU24_04140 PF04055 Radical SAM superfamily RYU24_04160 PF00313 'Cold-shock' DNA-binding domain RYU24_04170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_04170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_04170 PF12806 Acetyl-CoA dehydrogenase C-terminal like RYU24_04170 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_04180 PF08501 Shikimate dehydrogenase substrate binding domain RYU24_04180 PF01488 Shikimate / quinate 5-dehydrogenase RYU24_04180 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RYU24_04200 PF01218 Coproporphyrinogen III oxidase RYU24_04210 PF06969 HemN C-terminal domain RYU24_04210 PF04055 Radical SAM superfamily RYU24_04220 PF00925 GTP cyclohydrolase II RYU24_04230 PF02779 Transketolase, pyrimidine binding domain RYU24_04230 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RYU24_04230 PF02780 Transketolase, C-terminal domain RYU24_04240 PF00459 Inositol monophosphatase family RYU24_04250 PF00270 DEAD/DEAH box helicase RYU24_04250 PF00271 Helicase conserved C-terminal domain RYU24_04260 PF00005 ABC transporter RYU24_04270 PF02405 Permease MlaE RYU24_04280 PF02470 MlaD protein RYU24_04290 PF05494 MlaC protein RYU24_04310 PF01544 CorA-like Mg2+ transporter protein RYU24_04320 PF03641 Possible lysine decarboxylase RYU24_04340 PF00156 Phosphoribosyl transferase domain RYU24_04350 PF00270 DEAD/DEAH box helicase RYU24_04350 PF00271 Helicase conserved C-terminal domain RYU24_04350 PF17191 RecG wedge domain RYU24_04380 PF01553 Acyltransferase RYU24_04400 PF00375 Sodium:dicarboxylate symporter family RYU24_04440 PF01926 50S ribosome-binding GTPase RYU24_04450 PF02082 Transcriptional regulator RYU24_04460 PF00970 Oxidoreductase FAD-binding domain RYU24_04460 PF00042 Globin RYU24_04460 PF00175 Oxidoreductase NAD-binding domain RYU24_04470 PF05872 Bacterial protein of unknown function (DUF853) RYU24_04480 PF01053 Cys/Met metabolism PLP-dependent enzyme RYU24_04490 PF00117 Glutamine amidotransferase class-I RYU24_04500 PF00338 Ribosomal protein S10p/S20e RYU24_04510 PF00297 Ribosomal protein L3 RYU24_04520 PF00573 Ribosomal protein L4/L1 family RYU24_04530 PF00276 Ribosomal protein L23 RYU24_04540 PF03947 Ribosomal Proteins L2, C-terminal domain RYU24_04540 PF00181 Ribosomal Proteins L2, RNA binding domain RYU24_04550 PF00203 Ribosomal protein S19 RYU24_04560 PF00237 Ribosomal protein L22p/L17e RYU24_04570 PF00189 Ribosomal protein S3, C-terminal domain RYU24_04570 PF07650 KH domain RYU24_04580 PF00252 Ribosomal protein L16p/L10e RYU24_04590 PF00831 Ribosomal L29 protein RYU24_04600 PF00366 Ribosomal protein S17 RYU24_04610 PF00238 Ribosomal protein L14p/L23e RYU24_04620 PF00467 KOW motif RYU24_04620 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RYU24_04630 PF00281 Ribosomal protein L5 RYU24_04630 PF00673 ribosomal L5P family C-terminus RYU24_04640 PF00253 Ribosomal protein S14p/S29e RYU24_04650 PF00410 Ribosomal protein S8 RYU24_04660 PF00347 Ribosomal protein L6 RYU24_04670 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RYU24_04680 PF03719 Ribosomal protein S5, C-terminal domain RYU24_04680 PF00333 Ribosomal protein S5, N-terminal domain RYU24_04690 PF00327 Ribosomal protein L30p/L7e RYU24_04700 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RYU24_04710 PF00344 SecY translocase RYU24_04720 PF00416 Ribosomal protein S13/S18 RYU24_04730 PF00411 Ribosomal protein S11 RYU24_04740 PF00163 Ribosomal protein S4/S9 N-terminal domain RYU24_04740 PF01479 S4 domain RYU24_04750 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RYU24_04750 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RYU24_04750 PF01000 RNA polymerase Rpb3/RpoA insert domain RYU24_04760 PF01196 Ribosomal protein L17 RYU24_04770 PF00743 Flavin-binding monooxygenase-like RYU24_04780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_04780 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_04780 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_04790 PF03937 Flavinator of succinate dehydrogenase RYU24_04840 PF00892 EamA-like transporter family RYU24_04860 PF09526 Probable metal-binding protein (DUF2387) RYU24_04870 PF01432 Peptidase family M3 RYU24_04890 PF17876 Cold shock domain RYU24_04890 PF08461 Ribonuclease R winged-helix domain RYU24_04890 PF08206 Ribonuclease B OB domain RYU24_04890 PF00773 RNB domain RYU24_04890 PF00575 S1 RNA binding domain RYU24_04930 PF01557 Fumarylacetoacetate (FAA) hydrolase family RYU24_04950 PF03631 Virulence factor BrkB RYU24_04960 PF03358 NADPH-dependent FMN reductase RYU24_05040 PF02130 Uncharacterized protein family UPF0054 RYU24_05050 PF02562 PhoH-like protein RYU24_05060 PF04055 Radical SAM superfamily RYU24_05060 PF01938 TRAM domain RYU24_05060 PF00919 Uncharacterized protein family UPF0004 RYU24_05070 PF01551 Peptidase family M23 RYU24_05070 PF10145 Phage-related minor tail protein RYU24_05070 PF01464 Transglycosylase SLT domain RYU24_05090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RYU24_05090 PF00056 lactate/malate dehydrogenase, NAD binding domain RYU24_05150 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RYU24_05160 PF01066 CDP-alcohol phosphatidyltransferase RYU24_05180 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_05180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RYU24_05200 PF00753 Metallo-beta-lactamase superfamily RYU24_05200 PF04273 Putative phosphatase (DUF442) RYU24_05220 PF00085 Thioredoxin RYU24_05230 PF03061 Thioesterase superfamily RYU24_05250 PF04461 Protein of unknown function (DUF520) RYU24_05270 PF01266 FAD dependent oxidoreductase RYU24_05270 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RYU24_05290 PF03795 YCII-related domain RYU24_05300 PF04279 Intracellular septation protein A RYU24_05310 PF02811 PHP domain RYU24_05320 PF01062 Bestrophin, RFP-TM, chloride channel RYU24_05330 PF04002 RadC-like JAB domain RYU24_05340 PF04127 DNA / pantothenate metabolism flavoprotein RYU24_05340 PF02441 Flavoprotein RYU24_05360 PF01207 Dihydrouridine synthase (Dus) RYU24_05370 PF00589 Phage integrase family RYU24_05500 PF01726 LexA DNA binding domain RYU24_05500 PF00717 Peptidase S24-like RYU24_05590 PF03354 Phage Terminase RYU24_05830 PF07690 Major Facilitator Superfamily RYU24_05840 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RYU24_05840 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RYU24_05850 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RYU24_05860 PF02233 NAD(P) transhydrogenase beta subunit RYU24_05890 PF01261 Xylose isomerase-like TIM barrel RYU24_05900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RYU24_05900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RYU24_05910 PF00378 Enoyl-CoA hydratase/isomerase RYU24_05920 PF00672 HAMP domain RYU24_05920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_05920 PF00512 His Kinase A (phospho-acceptor) domain RYU24_05920 PF00072 Response regulator receiver domain RYU24_05920 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RYU24_05920 PF01627 Hpt domain RYU24_05930 PF00291 Pyridoxal-phosphate dependent enzyme RYU24_05950 PF05958 tRNA (Uracil-5-)-methyltransferase RYU24_05960 PF13291 ACT domain RYU24_05960 PF04607 Region found in RelA / SpoT proteins RYU24_05960 PF02824 TGS domain RYU24_05980 PF07549 SecD/SecF GG Motif RYU24_05980 PF02355 Protein export membrane protein RYU24_05990 PF13721 SecD export protein N-terminal TM region RYU24_05990 PF02355 Protein export membrane protein RYU24_05990 PF07549 SecD/SecF GG Motif RYU24_06000 PF02699 Preprotein translocase subunit RYU24_06010 PF01702 Queuine tRNA-ribosyltransferase RYU24_06040 PF04011 LemA family RYU24_06060 PF02547 Queuosine biosynthesis protein RYU24_06070 PF00501 AMP-binding enzyme RYU24_06070 PF13193 AMP-binding enzyme C-terminal domain RYU24_06090 PF01565 FAD binding domain RYU24_06090 PF04030 D-arabinono-1,4-lactone oxidase RYU24_06110 PF03129 Anticodon binding domain RYU24_06110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RYU24_06110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RYU24_06110 PF02824 TGS domain RYU24_06120 PF00707 Translation initiation factor IF-3, C-terminal domain RYU24_06120 PF05198 Translation initiation factor IF-3, N-terminal domain RYU24_06140 PF13276 HTH-like domain RYU24_06140 PF00665 Integrase core domain RYU24_06140 PF13333 Integrase core domain RYU24_06160 PF00011 Hsp20/alpha crystallin family RYU24_06170 PF00043 Glutathione S-transferase, C-terminal domain RYU24_06170 PF02798 Glutathione S-transferase, N-terminal domain RYU24_06190 PF09335 SNARE associated Golgi protein RYU24_06210 PF01632 Ribosomal protein L35 RYU24_06220 PF00453 Ribosomal protein L20 RYU24_06240 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RYU24_06240 PF01409 tRNA synthetases class II core domain (F) RYU24_06250 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RYU24_06250 PF01588 Putative tRNA binding domain RYU24_06250 PF03484 tRNA synthetase B5 domain RYU24_06250 PF03483 B3/4 domain RYU24_06250 PF03147 Ferredoxin-fold anticodon binding domain RYU24_06260 PF00216 Bacterial DNA-binding protein RYU24_06280 PF07498 Rho termination factor, N-terminal domain RYU24_06280 PF07497 Rho termination factor, RNA-binding domain RYU24_06280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RYU24_06290 PF00085 Thioredoxin RYU24_06300 PF02541 Ppx/GppA phosphatase family RYU24_06310 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RYU24_06320 PF01171 PP-loop family RYU24_06320 PF09179 TilS substrate binding domain RYU24_06320 PF11734 TilS substrate C-terminal domain RYU24_06330 PF03807 NADP oxidoreductase coenzyme F420-dependent RYU24_06330 PF14748 Pyrroline-5-carboxylate reductase dimerisation RYU24_06340 PF02325 YGGT family RYU24_06350 PF01367 5'-3' exonuclease, C-terminal SAM fold RYU24_06350 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RYU24_06350 PF00476 DNA polymerase family A RYU24_06350 PF01612 3'-5' exonuclease RYU24_06390 PF00437 Type II/IV secretion system protein RYU24_06400 PF02566 OsmC-like protein RYU24_06410 PF00795 Carbon-nitrogen hydrolase RYU24_06500 PF04386 Stringent starvation protein B RYU24_06510 PF00043 Glutathione S-transferase, C-terminal domain RYU24_06510 PF02798 Glutathione S-transferase, N-terminal domain RYU24_06530 PF00380 Ribosomal protein S9/S16 RYU24_06540 PF00572 Ribosomal protein L13 RYU24_06560 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RYU24_06570 PF00398 Ribosomal RNA adenine dimethylase RYU24_06580 PF00149 Calcineurin-like phosphoesterase RYU24_06660 PF16360 GTP-binding GTPase Middle Region RYU24_06660 PF13167 GTP-binding GTPase N-terminal RYU24_06660 PF01926 50S ribosome-binding GTPase RYU24_06690 PF13091 PLD-like domain RYU24_06700 PF00149 Calcineurin-like phosphoesterase RYU24_06700 PF10518 TAT (twin-arginine translocation) pathway signal sequence RYU24_06720 PF00083 Sugar (and other) transporter RYU24_06720 PF07690 Major Facilitator Superfamily RYU24_06740 PF03006 Haemolysin-III related RYU24_06780 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RYU24_06780 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RYU24_06780 PF00378 Enoyl-CoA hydratase/isomerase RYU24_06790 PF02803 Thiolase, C-terminal domain RYU24_06790 PF00108 Thiolase, N-terminal domain RYU24_06800 PF12833 Helix-turn-helix domain RYU24_06800 PF02311 AraC-like ligand binding domain RYU24_06810 PF02515 CoA-transferase family III RYU24_06820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RYU24_06820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RYU24_06850 PF02803 Thiolase, C-terminal domain RYU24_06850 PF00108 Thiolase, N-terminal domain RYU24_06860 PF07963 Prokaryotic N-terminal methylation motif RYU24_06860 PF00114 Pilin (bacterial filament) RYU24_06870 PF13505 Outer membrane protein beta-barrel domain RYU24_06870 PF00691 OmpA family RYU24_06890 PF00324 Amino acid permease RYU24_06900 PF05175 Methyltransferase small domain RYU24_06900 PF08468 Methyltransferase small domain N-terminal RYU24_06910 PF00860 Permease family RYU24_06920 PF00679 Elongation factor G C-terminus RYU24_06920 PF00009 Elongation factor Tu GTP binding domain RYU24_06920 PF03144 Elongation factor Tu domain 2 RYU24_06930 PF01741 Large-conductance mechanosensitive channel, MscL RYU24_06940 PF00639 PPIC-type PPIASE domain RYU24_06940 PF09312 SurA N-terminal domain RYU24_06950 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RYU24_06950 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RYU24_06950 PF06827 Zinc finger found in FPG and IleRS RYU24_06960 PF04966 Carbohydrate-selective porin, OprB family RYU24_06970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RYU24_07000 PF01571 Aminomethyltransferase folate-binding domain RYU24_07010 PF07731 Multicopper oxidase RYU24_07010 PF07732 Multicopper oxidase RYU24_07020 PF00330 Aconitase family (aconitate hydratase) RYU24_07020 PF00694 Aconitase C-terminal domain RYU24_07100 PF00849 RNA pseudouridylate synthase RYU24_07120 PF13359 DDE superfamily endonuclease RYU24_07120 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_07160 PF03831 PhnA domain RYU24_07160 PF08274 PhnA Zinc-Ribbon RYU24_07200 PF02581 Thiamine monophosphate synthase RYU24_07200 PF03070 TENA/THI-4/PQQC family RYU24_07200 PF08543 Phosphomethylpyrimidine kinase RYU24_07210 PF13419 Haloacid dehalogenase-like hydrolase RYU24_07260 PF05656 Protein of unknown function (DUF805) RYU24_07280 PF00268 Ribonucleotide reductase, small chain RYU24_07310 PF03477 ATP cone domain RYU24_07310 PF02867 Ribonucleotide reductase, barrel domain RYU24_07310 PF00317 Ribonucleotide reductase, all-alpha domain RYU24_07320 PF00072 Response regulator receiver domain RYU24_07320 PF00486 Transcriptional regulatory protein, C terminal RYU24_07330 PF00512 His Kinase A (phospho-acceptor) domain RYU24_07330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_07330 PF00672 HAMP domain RYU24_07350 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RYU24_07360 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RYU24_07370 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RYU24_07370 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RYU24_07390 PF10531 SLBB domain RYU24_07390 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RYU24_07390 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RYU24_07400 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RYU24_07400 PF00384 Molybdopterin oxidoreductase RYU24_07400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RYU24_07410 PF00146 NADH dehydrogenase RYU24_07420 PF12838 4Fe-4S dicluster domain RYU24_07430 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RYU24_07440 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RYU24_07450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RYU24_07450 PF00361 Proton-conducting membrane transporter RYU24_07460 PF00361 Proton-conducting membrane transporter RYU24_07470 PF00361 Proton-conducting membrane transporter RYU24_07490 PF00313 'Cold-shock' DNA-binding domain RYU24_07510 PF00313 'Cold-shock' DNA-binding domain RYU24_07520 PF03466 LysR substrate binding domain RYU24_07520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_07530 PF00175 Oxidoreductase NAD-binding domain RYU24_07530 PF00970 Oxidoreductase FAD-binding domain RYU24_07560 PF05552 Conserved TM helix RYU24_07640 PF00909 Ammonium Transporter Family RYU24_07650 PF00753 Metallo-beta-lactamase superfamily RYU24_07680 PF01588 Putative tRNA binding domain RYU24_07680 PF09334 tRNA synthetases class I (M) RYU24_07700 PF10609 NUBPL iron-transfer P-loop NTPase RYU24_07730 PF16868 NMT1-like family RYU24_07750 PF00692 dUTPase RYU24_07800 PF03129 Anticodon binding domain RYU24_07800 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RYU24_07800 PF04073 Aminoacyl-tRNA editing domain RYU24_07810 PF00873 AcrB/AcrD/AcrF family RYU24_07840 PF00072 Response regulator receiver domain RYU24_07850 PF00072 Response regulator receiver domain RYU24_07860 PF01584 CheW-like domain RYU24_07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RYU24_07870 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RYU24_07880 PF00072 Response regulator receiver domain RYU24_07880 PF01627 Hpt domain RYU24_07880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_07880 PF01584 CheW-like domain RYU24_07900 PF07687 Peptidase dimerisation domain RYU24_07900 PF01546 Peptidase family M20/M25/M40 RYU24_07930 PF04304 Protein of unknown function (DUF454) RYU24_07970 PF00667 FAD binding domain RYU24_07970 PF00175 Oxidoreductase NAD-binding domain RYU24_07970 PF00258 Flavodoxin RYU24_07990 PF12805 FUSC-like inner membrane protein yccS RYU24_08000 PF07690 Major Facilitator Superfamily RYU24_08010 PF00881 Nitroreductase family RYU24_08020 PF03616 Sodium/glutamate symporter RYU24_08030 PF01235 Sodium:alanine symporter family RYU24_08040 PF02417 Chromate transporter RYU24_08050 PF01734 Patatin-like phospholipase RYU24_08070 PF03061 Thioesterase superfamily RYU24_08080 PF00440 Bacterial regulatory proteins, tetR family RYU24_08080 PF16859 Tetracyclin repressor-like, C-terminal domain RYU24_08090 PF07690 Major Facilitator Superfamily RYU24_08100 PF02798 Glutathione S-transferase, N-terminal domain RYU24_08110 PF01494 FAD binding domain RYU24_08120 PF01494 FAD binding domain RYU24_08140 PF07683 Cobalamin synthesis protein cobW C-terminal domain RYU24_08140 PF02492 CobW/HypB/UreG, nucleotide-binding domain RYU24_08150 PF07152 YaeQ protein RYU24_08160 PF02308 MgtC family RYU24_08170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RYU24_08180 PF00990 Diguanylate cyclase, GGDEF domain RYU24_08240 PF00083 Sugar (and other) transporter RYU24_08260 PF01327 Polypeptide deformylase RYU24_08270 PF01906 Putative heavy-metal-binding RYU24_08280 PF01906 Putative heavy-metal-binding RYU24_08290 PF02321 Outer membrane efflux protein RYU24_08300 PF00873 AcrB/AcrD/AcrF family RYU24_08310 PF00529 HlyD membrane-fusion protein of T1SS RYU24_08310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RYU24_08320 PF01569 PAP2 superfamily RYU24_08340 PF00348 Polyprenyl synthetase RYU24_08350 PF00829 Ribosomal prokaryotic L21 protein RYU24_08360 PF01016 Ribosomal L27 protein RYU24_08370 PF03548 Outer membrane lipoprotein carrier protein LolA RYU24_08390 PF02403 Seryl-tRNA synthetase N-terminal domain RYU24_08390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RYU24_08400 PF10414 Sirohaem synthase dimerisation region RYU24_08400 PF14824 Sirohaem biosynthesis protein central RYU24_08400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RYU24_08410 PF00588 SpoU rRNA Methylase family RYU24_08440 PF13520 Amino acid permease RYU24_08450 PF00465 Iron-containing alcohol dehydrogenase RYU24_08470 PF03099 Biotin/lipoate A/B protein ligase family RYU24_08490 PF04539 Sigma-70 region 3 RYU24_08490 PF04542 Sigma-70 region 2 RYU24_08490 PF03979 Sigma-70 factor, region 1.1 RYU24_08490 PF00140 Sigma-70 factor, region 1.2 RYU24_08490 PF04546 Sigma-70, non-essential region RYU24_08490 PF04545 Sigma-70, region 4 RYU24_08530 PF09335 SNARE associated Golgi protein RYU24_08550 PF00581 Rhodanese-like domain RYU24_08550 PF17773 UPF0176 acylphosphatase like domain RYU24_08580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RYU24_08610 PF02261 Aspartate decarboxylase RYU24_08620 PF01195 Peptidyl-tRNA hydrolase RYU24_08630 PF01386 Ribosomal L25p family RYU24_08640 PF14572 Phosphoribosyl synthetase-associated domain RYU24_08640 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RYU24_08650 PF08544 GHMP kinases C terminal RYU24_08650 PF00288 GHMP kinases N terminal domain RYU24_08660 PF03550 Outer membrane lipoprotein LolB RYU24_08680 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RYU24_08680 PF01488 Shikimate / quinate 5-dehydrogenase RYU24_08680 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RYU24_08690 PF10410 DnaB-helicase binding domain of primase RYU24_08690 PF08278 DNA primase DnaG DnaB-binding RYU24_08690 PF08275 DNA primase catalytic core, N-terminal domain RYU24_08690 PF01807 CHC2 zinc finger RYU24_08700 PF13525 Outer membrane lipoprotein RYU24_08710 PF00849 RNA pseudouridylate synthase RYU24_08710 PF01479 S4 domain RYU24_08720 PF02578 Multi-copper polyphenol oxidoreductase laccase RYU24_08730 PF03358 NADPH-dependent FMN reductase RYU24_08740 PF01668 SmpB protein RYU24_08750 PF01467 Cytidylyltransferase-like RYU24_08760 PF00037 4Fe-4S binding domain RYU24_08790 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_08800 PF01042 Endoribonuclease L-PSP RYU24_08810 PF00440 Bacterial regulatory proteins, tetR family RYU24_08820 PF03449 Transcription elongation factor, N-terminal RYU24_08820 PF01272 Transcription elongation factor, GreA/GreB, C-term RYU24_08830 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RYU24_08830 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RYU24_08830 PF02142 MGS-like domain RYU24_08840 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RYU24_08840 PF00117 Glutamine amidotransferase class-I RYU24_08880 PF01985 CRS1 / YhbY (CRM) domain RYU24_08890 PF01728 FtsJ-like methyltransferase RYU24_08900 PF00004 ATPase family associated with various cellular activities (AAA) RYU24_08900 PF17862 AAA+ lid domain RYU24_08900 PF06480 FtsH Extracellular RYU24_08900 PF01434 Peptidase family M41 RYU24_08920 PF00809 Pterin binding enzyme RYU24_08980 PF03471 Transporter associated domain RYU24_08980 PF01595 Cyclin M transmembrane N-terminal domain RYU24_08980 PF00571 CBS domain RYU24_08990 PF03466 LysR substrate binding domain RYU24_08990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_09000 PF00463 Isocitrate lyase family RYU24_09010 PF00873 AcrB/AcrD/AcrF family RYU24_09020 PF00873 AcrB/AcrD/AcrF family RYU24_09030 PF00571 CBS domain RYU24_09030 PF01769 Divalent cation transporter RYU24_09030 PF03448 MgtE intracellular N domain RYU24_09050 PF01435 Peptidase family M48 RYU24_09060 PF10145 Phage-related minor tail protein RYU24_09060 PF01551 Peptidase family M23 RYU24_09060 PF01464 Transglycosylase SLT domain RYU24_09070 PF01171 PP-loop family RYU24_09090 PF01464 Transglycosylase SLT domain RYU24_09090 PF00497 Bacterial extracellular solute-binding proteins, family 3 RYU24_09100 PF01272 Transcription elongation factor, GreA/GreB, C-term RYU24_09100 PF03449 Transcription elongation factor, N-terminal RYU24_09110 PF03466 LysR substrate binding domain RYU24_09110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_09120 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_09120 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_09120 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_09130 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RYU24_09130 PF11890 Domain of unknown function (DUF3410) RYU24_09130 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RYU24_09140 PF00152 tRNA synthetases class II (D, K and N) RYU24_09150 PF13673 Acetyltransferase (GNAT) domain RYU24_09160 PF12627 Probable RNA and SrmB- binding site of polymerase A RYU24_09160 PF01743 Poly A polymerase head domain RYU24_09170 PF00390 Malic enzyme, N-terminal domain RYU24_09170 PF01515 Phosphate acetyl/butaryl transferase RYU24_09170 PF03949 Malic enzyme, NAD binding domain RYU24_09180 PF00563 EAL domain RYU24_09180 PF00990 Diguanylate cyclase, GGDEF domain RYU24_09180 PF03707 Bacterial signalling protein N terminal repeat RYU24_09190 PF04452 RNA methyltransferase RYU24_09200 PF02219 Methylenetetrahydrofolate reductase RYU24_09210 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RYU24_09210 PF05221 S-adenosyl-L-homocysteine hydrolase RYU24_09250 PF08238 Sel1 repeat RYU24_09270 PF18073 Rubredoxin metal binding domain RYU24_09290 PF01235 Sodium:alanine symporter family RYU24_09300 PF00324 Amino acid permease RYU24_09320 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RYU24_09320 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RYU24_09330 PF01678 Diaminopimelate epimerase RYU24_09340 PF00561 alpha/beta hydrolase fold RYU24_09350 PF02899 Phage integrase, N-terminal SAM-like domain RYU24_09350 PF00589 Phage integrase family RYU24_09370 PF01037 Lrp/AsnC ligand binding domain RYU24_09380 PF01810 LysE type translocator RYU24_09390 PF01012 Electron transfer flavoprotein domain RYU24_09400 PF00766 Electron transfer flavoprotein FAD-binding domain RYU24_09400 PF01012 Electron transfer flavoprotein domain RYU24_09420 PF00521 DNA gyrase/topoisomerase IV, subunit A RYU24_09420 PF03989 DNA gyrase C-terminal domain, beta-propeller RYU24_09470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RYU24_09490 PF00266 Aminotransferase class-V RYU24_09510 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RYU24_09540 PF12704 MacB-like periplasmic core domain RYU24_09540 PF02687 FtsX-like permease family RYU24_09550 PF00005 ABC transporter RYU24_09560 PF00753 Metallo-beta-lactamase superfamily RYU24_09560 PF13567 Domain of unknown function (DUF4131) RYU24_09560 PF03772 Competence protein RYU24_09580 PF01343 Peptidase family S49 RYU24_09580 PF06965 Na+/H+ antiporter 1 RYU24_09590 PF08386 TAP-like protein RYU24_09590 PF00561 alpha/beta hydrolase fold RYU24_09600 PF00551 Formyl transferase RYU24_09610 PF02769 AIR synthase related protein, C-terminal domain RYU24_09610 PF00586 AIR synthase related protein, N-terminal domain RYU24_09620 PF01594 AI-2E family transporter RYU24_09630 PF11638 DnaA N-terminal domain RYU24_09630 PF08299 Bacterial dnaA protein helix-turn-helix RYU24_09630 PF00308 Bacterial dnaA protein RYU24_09690 PF08032 RNA 2'-O ribose methyltransferase substrate binding RYU24_09690 PF00588 SpoU rRNA Methylase family RYU24_09700 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RYU24_09720 PF00691 OmpA family RYU24_09730 PF04052 TolB amino-terminal domain RYU24_09730 PF07676 WD40-like Beta Propeller Repeat RYU24_09750 PF02472 Biopolymer transport protein ExbD/TolR RYU24_09760 PF01618 MotA/TolQ/ExbB proton channel family RYU24_09770 PF03061 Thioesterase superfamily RYU24_09780 PF01546 Peptidase family M20/M25/M40 RYU24_09780 PF07687 Peptidase dimerisation domain RYU24_09790 PF17864 RuvB AAA lid domain RYU24_09790 PF05491 RuvB C-terminal winged helix domain RYU24_09790 PF05496 Holliday junction DNA helicase RuvB P-loop domain RYU24_09800 PF07499 RuvA, C-terminal domain RYU24_09800 PF01330 RuvA N terminal domain RYU24_09810 PF01966 HD domain RYU24_09820 PF00884 Sulfatase RYU24_09830 PF00884 Sulfatase RYU24_09840 PF13340 Putative transposase of IS4/5 family (DUF4096) RYU24_09850 PF02769 AIR synthase related protein, C-terminal domain RYU24_09850 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RYU24_09850 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RYU24_09880 PF03466 LysR substrate binding domain RYU24_09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_09900 PF01784 NIF3 (NGG1p interacting factor 3) RYU24_09920 PF00881 Nitroreductase family RYU24_09930 PF00378 Enoyl-CoA hydratase/isomerase RYU24_09940 PF01467 Cytidylyltransferase-like RYU24_09940 PF00293 NUDIX domain RYU24_09950 PF04264 YceI-like domain RYU24_09960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_09960 PF03466 LysR substrate binding domain RYU24_09970 PF01810 LysE type translocator RYU24_09980 PF00578 AhpC/TSA family RYU24_10000 PF06508 Queuosine biosynthesis protein QueC RYU24_10010 PF04055 Radical SAM superfamily RYU24_10020 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_10020 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RYU24_10020 PF14602 Hexapeptide repeat of succinyl-transferase RYU24_10060 PF03466 LysR substrate binding domain RYU24_10060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_10070 PF12857 TOBE-like domain RYU24_10070 PF00005 ABC transporter RYU24_10080 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_10090 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_10140 PF02618 YceG-like family RYU24_10150 PF02223 Thymidylate kinase RYU24_10170 PF00890 FAD binding domain RYU24_10170 PF02910 Fumarate reductase flavoprotein C-term RYU24_10180 PF13180 PDZ domain RYU24_10200 PF00679 Elongation factor G C-terminus RYU24_10200 PF00009 Elongation factor Tu GTP binding domain RYU24_10200 PF03144 Elongation factor Tu domain 2 RYU24_10200 PF06421 GTP-binding protein LepA C-terminus RYU24_10210 PF10502 Signal peptidase, peptidase S26 RYU24_10230 PF14622 Ribonuclease-III-like RYU24_10230 PF00035 Double-stranded RNA binding motif RYU24_10240 PF01926 50S ribosome-binding GTPase RYU24_10240 PF07650 KH domain RYU24_10260 PF02565 Recombination protein O C terminal RYU24_10260 PF11967 Recombination protein O N terminal RYU24_10270 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RYU24_10280 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RYU24_10320 PF01554 MatE RYU24_10330 PF00155 Aminotransferase class I and II RYU24_10340 PF00557 Metallopeptidase family M24 RYU24_10350 PF00318 Ribosomal protein S2 RYU24_10360 PF00889 Elongation factor TS RYU24_10390 PF03330 Lytic transglycolase RYU24_10390 PF05036 Sporulation related domain RYU24_10400 PF13406 Transglycosylase SLT domain RYU24_10420 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RYU24_10420 PF14489 QueF-like protein RYU24_10430 PF01061 ABC-2 type transporter RYU24_10440 PF00005 ABC transporter RYU24_10530 PF00464 Serine hydroxymethyltransferase RYU24_10550 PF03350 Uncharacterized protein family, UPF0114 RYU24_10570 PF05816 Toxic anion resistance protein (TelA) RYU24_10590 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_10590 PF13192 Thioredoxin domain RYU24_10600 PF00037 4Fe-4S binding domain RYU24_10610 PF01136 Peptidase family U32 RYU24_10610 PF16325 Peptidase family U32 C-terminal domain RYU24_10620 PF13411 MerR HTH family regulatory protein RYU24_10660 PF13360 PQQ-like domain RYU24_10660 PF01011 PQQ enzyme repeat RYU24_10670 PF00970 Oxidoreductase FAD-binding domain RYU24_10670 PF00175 Oxidoreductase NAD-binding domain RYU24_10680 PF18389 TrmO C-terminal domain RYU24_10680 PF01980 tRNA-methyltransferase O RYU24_10720 PF00437 Type II/IV secretion system protein RYU24_10720 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RYU24_10740 PF00072 Response regulator receiver domain RYU24_10740 PF00486 Transcriptional regulatory protein, C terminal RYU24_10750 PF08521 Two-component sensor kinase N-terminal RYU24_10750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_10750 PF00512 His Kinase A (phospho-acceptor) domain RYU24_10770 PF00293 NUDIX domain RYU24_10790 PF14814 Bifunctional transglycosylase second domain RYU24_10790 PF00905 Penicillin binding protein transpeptidase domain RYU24_10790 PF00912 Transglycosylase RYU24_10800 PF01513 ATP-NAD kinase RYU24_10810 PF07023 Protein of unknown function (DUF1315) RYU24_10820 PF00591 Glycosyl transferase family, a/b domain RYU24_10820 PF02885 Glycosyl transferase family, helical bundle domain RYU24_10830 PF00375 Sodium:dicarboxylate symporter family RYU24_10850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_10850 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_10850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_10860 PF01965 DJ-1/PfpI family RYU24_10870 PF01965 DJ-1/PfpI family RYU24_10880 PF01842 ACT domain RYU24_10880 PF01817 Chorismate mutase type II RYU24_10880 PF00800 Prephenate dehydratase RYU24_10890 PF00155 Aminotransferase class I and II RYU24_10900 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RYU24_10940 PF03883 Peroxide stress protein YaaA RYU24_10950 PF00860 Permease family RYU24_10960 PF00962 Adenosine/AMP deaminase RYU24_10990 PF01351 Ribonuclease HII RYU24_11000 PF02599 Global regulator protein family RYU24_11010 PF00696 Amino acid kinase family RYU24_11010 PF01842 ACT domain RYU24_11010 PF13840 ACT domain RYU24_11020 PF01411 tRNA synthetases class II (A) RYU24_11020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RYU24_11020 PF02272 DHHA1 domain RYU24_11030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RYU24_11030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RYU24_11070 PF13393 Histidyl-tRNA synthetase RYU24_11080 PF00709 Adenylosuccinate synthetase RYU24_11090 PF01435 Peptidase family M48 RYU24_11120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RYU24_11130 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_11140 PF00768 D-alanyl-D-alanine carboxypeptidase RYU24_11140 PF07943 Penicillin-binding protein 5, C-terminal domain RYU24_11170 PF00576 HIUase/Transthyretin family RYU24_11190 PF00486 Transcriptional regulatory protein, C terminal RYU24_11190 PF00072 Response regulator receiver domain RYU24_11200 PF00512 His Kinase A (phospho-acceptor) domain RYU24_11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_11200 PF00672 HAMP domain RYU24_11210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_11210 PF00512 His Kinase A (phospho-acceptor) domain RYU24_11210 PF00672 HAMP domain RYU24_11220 PF00849 RNA pseudouridylate synthase RYU24_11270 PF01757 Acyltransferase family RYU24_11300 PF00155 Aminotransferase class I and II RYU24_11310 PF01641 SelR domain RYU24_11320 PF00255 Glutathione peroxidase RYU24_11330 PF00155 Aminotransferase class I and II RYU24_11340 PF01909 Nucleotidyltransferase domain RYU24_11340 PF01966 HD domain RYU24_11340 PF08335 GlnD PII-uridylyltransferase RYU24_11350 PF02222 ATP-grasp domain RYU24_11370 PF05437 Branched-chain amino acid transport protein (AzlD) RYU24_11380 PF03591 AzlC protein RYU24_11410 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RYU24_11410 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RYU24_11420 PF01926 50S ribosome-binding GTPase RYU24_11420 PF06071 Protein of unknown function (DUF933) RYU24_11430 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_11440 PF09383 NIL domain RYU24_11440 PF00005 ABC transporter RYU24_11450 PF03180 NLPA lipoprotein RYU24_11460 PF00296 Luciferase-like monooxygenase RYU24_11480 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RYU24_11480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_11530 PF01709 Transcriptional regulator RYU24_11540 PF01553 Acyltransferase RYU24_11620 PF13356 Arm DNA-binding domain RYU24_11620 PF00589 Phage integrase family RYU24_11630 PF12008 Type I restriction and modification enzyme - subunit R C terminal RYU24_11630 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RYU24_11630 PF18766 SWI2/SNF2 ATPase RYU24_11660 PF00324 Amino acid permease RYU24_11670 PF00155 Aminotransferase class I and II RYU24_11670 PF00392 Bacterial regulatory proteins, gntR family RYU24_11680 PF00202 Aminotransferase class-III RYU24_11690 PF00171 Aldehyde dehydrogenase family RYU24_11700 PF13340 Putative transposase of IS4/5 family (DUF4096) RYU24_11730 PF12102 Domain of unknown function (DUF3578) RYU24_11730 PF07728 AAA domain (dynein-related subfamily) RYU24_11770 PF00149 Calcineurin-like phosphoesterase RYU24_11790 PF01037 Lrp/AsnC ligand binding domain RYU24_11800 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RYU24_11800 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RYU24_11810 PF00202 Aminotransferase class-III RYU24_11820 PF04958 Arginine N-succinyltransferase beta subunit RYU24_11830 PF00171 Aldehyde dehydrogenase family RYU24_11840 PF04996 Succinylarginine dihydrolase RYU24_11850 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RYU24_11860 PF00324 Amino acid permease RYU24_11870 PF00842 Alanine racemase, C-terminal domain RYU24_11870 PF01168 Alanine racemase, N-terminal domain RYU24_11880 PF13333 Integrase core domain RYU24_11880 PF00665 Integrase core domain RYU24_11880 PF13276 HTH-like domain RYU24_11890 PF01527 Transposase RYU24_11960 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RYU24_11960 PF00355 Rieske [2Fe-2S] domain RYU24_11970 PF01348 Type II intron maturase RYU24_11970 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) RYU24_11990 PF04055 Radical SAM superfamily RYU24_11990 PF06968 Biotin and Thiamin Synthesis associated domain RYU24_12010 PF08331 Domain of unknown function (DUF1730) RYU24_12020 PF01256 Carbohydrate kinase RYU24_12020 PF03853 YjeF-related protein N-terminus RYU24_12030 PF00708 Acylphosphatase RYU24_12040 PF02075 Crossover junction endodeoxyribonuclease RuvC RYU24_12060 PF01810 LysE type translocator RYU24_12090 PF00144 Beta-lactamase RYU24_12100 PF13192 Thioredoxin domain RYU24_12100 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_12120 PF01596 O-methyltransferase RYU24_12140 PF00578 AhpC/TSA family RYU24_12140 PF10417 C-terminal domain of 1-Cys peroxiredoxin RYU24_12150 PF00270 DEAD/DEAH box helicase RYU24_12150 PF11898 Domain of unknown function (DUF3418) RYU24_12150 PF04408 Helicase associated domain (HA2) RYU24_12150 PF00271 Helicase conserved C-terminal domain RYU24_12150 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RYU24_12160 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RYU24_12160 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RYU24_12190 PF14493 Helix-turn-helix domain RYU24_12190 PF05970 PIF1-like helicase RYU24_12200 PF04284 Protein of unknown function (DUF441) RYU24_12210 PF00849 RNA pseudouridylate synthase RYU24_12210 PF01479 S4 domain RYU24_12240 PF00849 RNA pseudouridylate synthase RYU24_12240 PF01479 S4 domain RYU24_12250 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RYU24_12260 PF01119 DNA mismatch repair protein, C-terminal domain RYU24_12260 PF08676 MutL C terminal dimerisation domain RYU24_12280 PF17209 Hfq protein RYU24_12290 PF09312 SurA N-terminal domain RYU24_12290 PF00639 PPIC-type PPIASE domain RYU24_12300 PF04453 LPS transport system D RYU24_12300 PF03968 OstA-like protein RYU24_12310 PF01636 Phosphotransferase enzyme family RYU24_12320 PF00483 Nucleotidyl transferase RYU24_12330 PF02527 rRNA small subunit methyltransferase G RYU24_12340 PF13614 AAA domain RYU24_12350 PF17762 HTH domain found in ParB protein RYU24_12350 PF02195 ParB-like nuclease domain RYU24_12360 PF01618 MotA/TolQ/ExbB proton channel family RYU24_12380 PF00664 ABC transporter transmembrane region RYU24_12380 PF00005 ABC transporter RYU24_12390 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RYU24_12400 PF02348 Cytidylyltransferase RYU24_12410 PF09115 DNA polymerase III, delta subunit, C terminal RYU24_12430 PF01026 TatD related DNase RYU24_12440 PF00440 Bacterial regulatory proteins, tetR family RYU24_12450 PF12019 Type II transport protein GspH RYU24_12470 PF11612 Type II secretion system (T2SS), protein J RYU24_12470 PF07963 Prokaryotic N-terminal methylation motif RYU24_12480 PF03934 Type II secretion system (T2SS), protein K RYU24_12500 PF03167 Uracil DNA glycosylase superfamily RYU24_12520 PF14437 MafB19-like deaminase RYU24_12540 PF02224 Cytidylate kinase RYU24_12550 PF00575 S1 RNA binding domain RYU24_12560 PF00216 Bacterial DNA-binding protein RYU24_12580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RYU24_12600 PF03956 Lysine exporter LysO RYU24_12610 PF00743 Flavin-binding monooxygenase-like RYU24_12620 PF00743 Flavin-binding monooxygenase-like RYU24_12640 PF03969 AFG1-like ATPase RYU24_12650 PF01274 Malate synthase RYU24_12660 PF00171 Aldehyde dehydrogenase family RYU24_12690 PF03471 Transporter associated domain RYU24_12690 PF03741 Integral membrane protein TerC family RYU24_12700 PF02110 Hydroxyethylthiazole kinase family RYU24_12730 PF11940 Domain of unknown function (DUF3458) Ig-like fold RYU24_12730 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RYU24_12730 PF01433 Peptidase family M1 domain RYU24_12750 PF00582 Universal stress protein family RYU24_12760 PF00582 Universal stress protein family RYU24_12770 PF00135 Carboxylesterase family RYU24_12780 PF00893 Small Multidrug Resistance protein RYU24_12790 PF03594 Benzoate membrane transport protein RYU24_12800 PF01810 LysE type translocator RYU24_12810 PF00923 Transaldolase/Fructose-6-phosphate aldolase RYU24_12820 PF03466 LysR substrate binding domain RYU24_12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_12840 PF00108 Thiolase, N-terminal domain RYU24_12840 PF02803 Thiolase, C-terminal domain RYU24_12890 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RYU24_12890 PF12170 DNA polymerase III tau subunit V interacting with alpha RYU24_12890 PF12169 DNA polymerase III subunits gamma and tau domain III RYU24_12900 PF03061 Thioesterase superfamily RYU24_12910 PF00465 Iron-containing alcohol dehydrogenase RYU24_12920 PF01451 Low molecular weight phosphotyrosine protein phosphatase RYU24_12930 PF01565 FAD binding domain RYU24_12930 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RYU24_12960 PF01645 Conserved region in glutamate synthase RYU24_12980 PF14403 Circularly permuted ATP-grasp type 2 RYU24_13000 PF08379 Bacterial transglutaminase-like N-terminal region RYU24_13000 PF01841 Transglutaminase-like superfamily RYU24_13030 PF00842 Alanine racemase, C-terminal domain RYU24_13030 PF01168 Alanine racemase, N-terminal domain RYU24_13040 PF03796 DnaB-like helicase C terminal domain RYU24_13040 PF00772 DnaB-like helicase N terminal domain RYU24_13050 PF01281 Ribosomal protein L9, N-terminal domain RYU24_13050 PF03948 Ribosomal protein L9, C-terminal domain RYU24_13060 PF01084 Ribosomal protein S18 RYU24_13070 PF01250 Ribosomal protein S6 RYU24_13080 PF01040 UbiA prenyltransferase family RYU24_13090 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RYU24_13100 PF00510 Cytochrome c oxidase subunit III RYU24_13110 PF00115 Cytochrome C and Quinol oxidase polypeptide I RYU24_13120 PF06481 COX Aromatic Rich Motif RYU24_13120 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RYU24_13140 PF00391 PEP-utilising enzyme, mobile domain RYU24_13140 PF02896 PEP-utilising enzyme, TIM barrel domain RYU24_13140 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RYU24_13150 PF03618 Kinase/pyrophosphorylase RYU24_13160 PF00743 Flavin-binding monooxygenase-like RYU24_13170 PF00296 Luciferase-like monooxygenase RYU24_13200 PF00472 RF-1 domain RYU24_13200 PF03462 PCRF domain RYU24_13210 PF17827 PrmC N-terminal domain RYU24_13210 PF13847 Methyltransferase domain RYU24_13220 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_13230 PF09084 NMT1/THI5 like RYU24_13260 PF00106 short chain dehydrogenase RYU24_13270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_13270 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_13270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_13280 PF13193 AMP-binding enzyme C-terminal domain RYU24_13280 PF00501 AMP-binding enzyme RYU24_13310 PF00899 ThiF family RYU24_13320 PF03109 ABC1 family RYU24_13330 PF02152 Dihydroneopterin aldolase RYU24_13360 PF03232 Ubiquinone biosynthesis protein COQ7 RYU24_13370 PF07690 Major Facilitator Superfamily RYU24_13380 PF07244 Surface antigen variable number repeat RYU24_13380 PF17243 POTRA domain TamA domain 1 RYU24_13380 PF01103 Surface antigen RYU24_13520 PF00145 C-5 cytosine-specific DNA methylase RYU24_13540 PF01726 LexA DNA binding domain RYU24_13540 PF00717 Peptidase S24-like RYU24_13580 PF01695 IstB-like ATP binding protein RYU24_14020 PF13742 OB-fold nucleic acid binding domain RYU24_14020 PF02601 Exonuclease VII, large subunit RYU24_14060 PF11791 Aconitate B N-terminal domain RYU24_14060 PF00330 Aconitase family (aconitate hydratase) RYU24_14060 PF06434 Aconitate hydratase 2 N-terminus RYU24_14090 PF03616 Sodium/glutamate symporter RYU24_14130 PF05525 Branched-chain amino acid transport protein RYU24_14140 PF00557 Metallopeptidase family M24 RYU24_14150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_14150 PF03466 LysR substrate binding domain RYU24_14160 PF02146 Sir2 family RYU24_14190 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_14190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RYU24_14230 PF00117 Glutamine amidotransferase class-I RYU24_14230 PF06418 CTP synthase N-terminus RYU24_14240 PF00793 DAHP synthetase I family RYU24_14250 PF03952 Enolase, N-terminal domain RYU24_14250 PF00113 Enolase, C-terminal TIM barrel domain RYU24_14260 PF04977 Septum formation initiator RYU24_14270 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RYU24_14280 PF01098 Cell cycle protein RYU24_14310 PF02322 Cytochrome bd terminal oxidase subunit II RYU24_14320 PF01654 Cytochrome bd terminal oxidase subunit I RYU24_14340 PF00267 Gram-negative porin RYU24_14350 PF01230 HIT domain RYU24_14370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RYU24_14370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RYU24_14390 PF01053 Cys/Met metabolism PLP-dependent enzyme RYU24_14400 PF02575 YbaB/EbfC DNA-binding family RYU24_14410 PF13662 Toprim domain RYU24_14410 PF02132 RecR protein RYU24_14420 PF00570 HRDC domain RYU24_14420 PF01612 3'-5' exonuclease RYU24_14430 PF05166 YcgL domain RYU24_14450 PF00004 ATPase family associated with various cellular activities (AAA) RYU24_14450 PF01434 Peptidase family M41 RYU24_14450 PF17862 AAA+ lid domain RYU24_14470 PF00291 Pyridoxal-phosphate dependent enzyme RYU24_14480 PF00478 IMP dehydrogenase / GMP reductase domain RYU24_14480 PF00571 CBS domain RYU24_14540 PF05193 Peptidase M16 inactive domain RYU24_14540 PF00675 Insulinase (Peptidase family M16) RYU24_14550 PF00448 SRP54-type protein, GTPase domain RYU24_14550 PF02881 SRP54-type protein, helical bundle domain RYU24_14580 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) RYU24_14600 PF00583 Acetyltransferase (GNAT) family RYU24_14610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_14610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_14610 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_14620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_14620 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_14620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_14630 PF03109 ABC1 family RYU24_14660 PF05175 Methyltransferase small domain RYU24_14670 PF01264 Chorismate synthase RYU24_14720 PF01266 FAD dependent oxidoreductase RYU24_14740 PF02542 YgbB family RYU24_14760 PF00793 DAHP synthetase I family RYU24_14770 PF01925 Sulfite exporter TauE/SafE RYU24_14780 PF02684 Lipid-A-disaccharide synthetase RYU24_14790 PF12852 Cupin RYU24_14790 PF12833 Helix-turn-helix domain RYU24_14800 PF00487 Fatty acid desaturase RYU24_14810 PF12806 Acetyl-CoA dehydrogenase C-terminal like RYU24_14810 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_14810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_14810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_14820 PF12833 Helix-turn-helix domain RYU24_14820 PF02311 AraC-like ligand binding domain RYU24_14840 PF01381 Helix-turn-helix RYU24_14870 PF01654 Cytochrome bd terminal oxidase subunit I RYU24_14880 PF02322 Cytochrome bd terminal oxidase subunit II RYU24_14890 PF00565 Staphylococcal nuclease homologue RYU24_14910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_14910 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_14910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_14940 PF00106 short chain dehydrogenase RYU24_15000 PF13091 PLD-like domain RYU24_15010 PF08240 Alcohol dehydrogenase GroES-like domain RYU24_15010 PF00107 Zinc-binding dehydrogenase RYU24_15030 PF00793 DAHP synthetase I family RYU24_15040 PF00437 Type II/IV secretion system protein RYU24_15050 PF00437 Type II/IV secretion system protein RYU24_15060 PF07690 Major Facilitator Superfamily RYU24_15070 PF01597 Glycine cleavage H-protein RYU24_15080 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RYU24_15080 PF12833 Helix-turn-helix domain RYU24_15090 PF00664 ABC transporter transmembrane region RYU24_15090 PF00005 ABC transporter RYU24_15100 PF00924 Mechanosensitive ion channel RYU24_15120 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) RYU24_15140 PF00375 Sodium:dicarboxylate symporter family RYU24_15150 PF01740 STAS domain RYU24_15150 PF00916 Sulfate permease family RYU24_15170 PF00291 Pyridoxal-phosphate dependent enzyme RYU24_15180 PF00403 Heavy-metal-associated domain RYU24_15190 PF09278 MerR, DNA binding RYU24_15190 PF00376 MerR family regulatory protein RYU24_15210 PF08360 QacR-like protein, C-terminal region RYU24_15210 PF00440 Bacterial regulatory proteins, tetR family RYU24_15220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_15220 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_15220 PF12806 Acetyl-CoA dehydrogenase C-terminal like RYU24_15220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_15230 PF02803 Thiolase, C-terminal domain RYU24_15230 PF00108 Thiolase, N-terminal domain RYU24_15240 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_15240 PF13359 DDE superfamily endonuclease RYU24_15250 PF13359 DDE superfamily endonuclease RYU24_15250 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_15260 PF15887 Putative zinc-binding metallo-peptidase RYU24_15260 PF10005 zinc-ribbon domain RYU24_15290 PF12146 Serine aminopeptidase, S33 RYU24_15300 PF02803 Thiolase, C-terminal domain RYU24_15300 PF00108 Thiolase, N-terminal domain RYU24_15310 PF01144 Coenzyme A transferase RYU24_15320 PF01144 Coenzyme A transferase RYU24_15330 PF03594 Benzoate membrane transport protein RYU24_15340 PF00106 short chain dehydrogenase RYU24_15350 PF00970 Oxidoreductase FAD-binding domain RYU24_15350 PF00111 2Fe-2S iron-sulfur cluster binding domain RYU24_15350 PF00175 Oxidoreductase NAD-binding domain RYU24_15360 PF00866 Ring hydroxylating beta subunit RYU24_15370 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RYU24_15370 PF00355 Rieske [2Fe-2S] domain RYU24_15380 PF00775 Dioxygenase RYU24_15380 PF04444 Catechol dioxygenase N terminus RYU24_15390 PF02426 Muconolactone delta-isomerase RYU24_15400 PF13378 Enolase C-terminal domain-like RYU24_15400 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RYU24_15410 PF03466 LysR substrate binding domain RYU24_15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_15420 PF07690 Major Facilitator Superfamily RYU24_15440 PF00155 Aminotransferase class I and II RYU24_15440 PF00392 Bacterial regulatory proteins, gntR family RYU24_15460 PF00501 AMP-binding enzyme RYU24_15460 PF13193 AMP-binding enzyme C-terminal domain RYU24_15470 PF00175 Oxidoreductase NAD-binding domain RYU24_15470 PF00111 2Fe-2S iron-sulfur cluster binding domain RYU24_15470 PF00970 Oxidoreductase FAD-binding domain RYU24_15480 PF00487 Fatty acid desaturase RYU24_15500 PF13419 Haloacid dehalogenase-like hydrolase RYU24_15530 PF00289 Biotin carboxylase, N-terminal domain RYU24_15530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RYU24_15530 PF02785 Biotin carboxylase C-terminal domain RYU24_15580 PF00691 OmpA family RYU24_15580 PF05736 OprF membrane domain RYU24_15590 PF08753 NikR C terminal nickel binding domain RYU24_15590 PF01402 Ribbon-helix-helix protein, copG family RYU24_15600 PF01425 Amidase RYU24_15610 PF00497 Bacterial extracellular solute-binding proteins, family 3 RYU24_15620 PF00893 Small Multidrug Resistance protein RYU24_15650 PF00005 ABC transporter RYU24_15660 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_15670 PF13419 Haloacid dehalogenase-like hydrolase RYU24_15680 PF00005 ABC transporter RYU24_15710 PF07715 TonB-dependent Receptor Plug Domain RYU24_15710 PF00593 TonB dependent receptor RYU24_15730 PF02028 BCCT, betaine/carnitine/choline family transporter RYU24_15740 PF13977 BetI-type transcriptional repressor, C-terminal RYU24_15740 PF00440 Bacterial regulatory proteins, tetR family RYU24_15750 PF00171 Aldehyde dehydrogenase family RYU24_15760 PF00732 GMC oxidoreductase RYU24_15760 PF05199 GMC oxidoreductase RYU24_15780 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RYU24_15780 PF18381 YcaO cyclodehydratase C-terminal domain RYU24_15790 PF09339 IclR helix-turn-helix domain RYU24_15800 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_15800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_15800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_15810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_15810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_15810 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_15820 PF07690 Major Facilitator Superfamily RYU24_15830 PF01144 Coenzyme A transferase RYU24_15840 PF01144 Coenzyme A transferase RYU24_15860 PF07690 Major Facilitator Superfamily RYU24_15880 PF07690 Major Facilitator Superfamily RYU24_15890 PF00378 Enoyl-CoA hydratase/isomerase RYU24_15900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RYU24_15900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RYU24_15900 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RYU24_15910 PF02803 Thiolase, C-terminal domain RYU24_15910 PF00108 Thiolase, N-terminal domain RYU24_15930 PF00596 Class II Aldolase and Adducin N-terminal domain RYU24_15940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RYU24_15950 PF00378 Enoyl-CoA hydratase/isomerase RYU24_15960 PF03060 Nitronate monooxygenase RYU24_15970 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_15970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_15970 PF12806 Acetyl-CoA dehydrogenase C-terminal like RYU24_15970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_15980 PF00561 alpha/beta hydrolase fold RYU24_15990 PF00743 Flavin-binding monooxygenase-like RYU24_16000 PF13193 AMP-binding enzyme C-terminal domain RYU24_16000 PF00501 AMP-binding enzyme RYU24_16010 PF02515 CoA-transferase family III RYU24_16020 PF07690 Major Facilitator Superfamily RYU24_16050 PF00378 Enoyl-CoA hydratase/isomerase RYU24_16060 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_16060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_16060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_16070 PF13193 AMP-binding enzyme C-terminal domain RYU24_16070 PF00501 AMP-binding enzyme RYU24_16110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RYU24_16120 PF02687 FtsX-like permease family RYU24_16120 PF12704 MacB-like periplasmic core domain RYU24_16130 PF00005 ABC transporter RYU24_16150 PF04143 Sulphur transport RYU24_16170 PF00753 Metallo-beta-lactamase superfamily RYU24_16190 PF07731 Multicopper oxidase RYU24_16190 PF07732 Multicopper oxidase RYU24_16190 PF00394 Multicopper oxidase RYU24_16200 PF05275 Copper resistance protein B precursor (CopB) RYU24_16240 PF00593 TonB dependent receptor RYU24_16240 PF07715 TonB-dependent Receptor Plug Domain RYU24_16250 PF02560 Cyanate lyase C-terminal domain RYU24_16260 PF01226 Formate/nitrite transporter RYU24_16270 PF00069 Protein kinase domain RYU24_16280 PF07995 Glucose / Sorbosone dehydrogenase RYU24_16290 PF00149 Calcineurin-like phosphoesterase RYU24_16310 PF01717 Cobalamin-independent synthase, Catalytic domain RYU24_16310 PF08267 Cobalamin-independent synthase, N-terminal domain RYU24_16320 PF01613 Flavin reductase like domain RYU24_16360 PF03466 LysR substrate binding domain RYU24_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_16380 PF04632 Fusaric acid resistance protein family RYU24_16400 PF13533 Biotin-lipoyl like RYU24_16430 PF00593 TonB dependent receptor RYU24_16430 PF07715 TonB-dependent Receptor Plug Domain RYU24_16440 PF01011 PQQ enzyme repeat RYU24_16450 PF04966 Carbohydrate-selective porin, OprB family RYU24_16470 PF01979 Amidohydrolase family RYU24_16480 PF02653 Branched-chain amino acid transport system / permease component RYU24_16500 PF00005 ABC transporter RYU24_16510 PF02608 ABC transporter substrate-binding protein PnrA-like RYU24_16530 PF00355 Rieske [2Fe-2S] domain RYU24_16540 PF03466 LysR substrate binding domain RYU24_16540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_16550 PF01979 Amidohydrolase family RYU24_16560 PF01979 Amidohydrolase family RYU24_16570 PF01494 FAD binding domain RYU24_16580 PF03561 Allantoicase repeat RYU24_16590 PF04115 Ureidoglycolate lyase RYU24_16610 PF00860 Permease family RYU24_16620 PF00576 HIUase/Transthyretin family RYU24_16660 PF00449 Urease alpha-subunit, N-terminal domain RYU24_16660 PF01979 Amidohydrolase family RYU24_16670 PF00699 Urease beta subunit RYU24_16680 PF00547 Urease, gamma subunit RYU24_16690 PF01774 UreD urease accessory protein RYU24_16710 PF02492 CobW/HypB/UreG, nucleotide-binding domain RYU24_16720 PF01730 UreF RYU24_16730 PF05194 UreE urease accessory protein, C-terminal domain RYU24_16730 PF02814 UreE urease accessory protein, N-terminal domain RYU24_16750 PF00005 ABC transporter RYU24_16760 PF12399 Branched-chain amino acid ATP-binding cassette transporter RYU24_16760 PF00005 ABC transporter RYU24_16780 PF02653 Branched-chain amino acid transport system / permease component RYU24_16800 PF12697 Alpha/beta hydrolase family RYU24_16870 PF10415 Fumarase C C-terminus RYU24_16870 PF00206 Lyase RYU24_16880 PF16363 GDP-mannose 4,6 dehydratase RYU24_16890 PF02635 DsrE/DsrF-like family RYU24_16950 PF04073 Aminoacyl-tRNA editing domain RYU24_16960 PF01220 Dehydroquinase class II RYU24_16970 PF00364 Biotin-requiring enzyme RYU24_16980 PF02785 Biotin carboxylase C-terminal domain RYU24_16980 PF00289 Biotin carboxylase, N-terminal domain RYU24_16980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RYU24_17000 PF00990 Diguanylate cyclase, GGDEF domain RYU24_17000 PF17151 Periplasmic sensor domain RYU24_17010 PF01425 Amidase RYU24_17020 PF12832 MFS_1 like family RYU24_17030 PF07690 Major Facilitator Superfamily RYU24_17050 PF13359 DDE superfamily endonuclease RYU24_17050 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_17080 PF13333 Integrase core domain RYU24_17080 PF00665 Integrase core domain RYU24_17080 PF13276 HTH-like domain RYU24_17110 PF00717 Peptidase S24-like RYU24_17120 PF11799 impB/mucB/samB family C-terminal domain RYU24_17120 PF11798 IMS family HHH motif RYU24_17120 PF13438 Domain of unknown function (DUF4113) RYU24_17120 PF00817 impB/mucB/samB family RYU24_17140 PF01381 Helix-turn-helix RYU24_17150 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system RYU24_17180 PF13335 Magnesium chelatase, subunit ChlI C-terminal RYU24_17180 PF01078 Magnesium chelatase, subunit ChlI RYU24_17190 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_17190 PF13359 DDE superfamily endonuclease RYU24_17200 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_17200 PF13359 DDE superfamily endonuclease RYU24_17230 PF13359 DDE superfamily endonuclease RYU24_17230 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_17250 PF02464 Competence-damaged protein RYU24_17250 PF18146 Damage-inducible protein CinA KH domain RYU24_17250 PF00994 Probable molybdopterin binding domain RYU24_17270 PF00285 Citrate synthase, C-terminal domain RYU24_17290 PF00440 Bacterial regulatory proteins, tetR family RYU24_17300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RYU24_17300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RYU24_17320 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RYU24_17330 PF00004 ATPase family associated with various cellular activities (AAA) RYU24_17330 PF07724 AAA domain (Cdc48 subfamily) RYU24_17330 PF17871 AAA lid domain RYU24_17330 PF02861 Clp amino terminal domain, pathogenicity island component RYU24_17330 PF10431 C-terminal, D2-small domain, of ClpB protein RYU24_17340 PF02617 ATP-dependent Clp protease adaptor protein ClpS RYU24_17360 PF01118 Semialdehyde dehydrogenase, NAD binding domain RYU24_17360 PF02774 Semialdehyde dehydrogenase, dimerisation domain RYU24_17380 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RYU24_17390 PF00291 Pyridoxal-phosphate dependent enzyme RYU24_17390 PF00585 C-terminal regulatory domain of Threonine dehydratase RYU24_17400 PF02080 TrkA-C domain RYU24_17400 PF02254 TrkA-N domain RYU24_17410 PF02386 Cation transport protein RYU24_17420 PF02253 Phospholipase A1 RYU24_17430 PF05193 Peptidase M16 inactive domain RYU24_17430 PF08367 Peptidase M16C associated RYU24_17430 PF00675 Insulinase (Peptidase family M16) RYU24_17450 PF00294 pfkB family carbohydrate kinase RYU24_17470 PF07290 Protein of unknown function (DUF1449) RYU24_17520 PF05698 Bacterial trigger factor protein (TF) C-terminus RYU24_17530 PF00216 Bacterial DNA-binding protein RYU24_17560 PF02082 Transcriptional regulator RYU24_17570 PF00266 Aminotransferase class-V RYU24_17580 PF01592 NifU-like N terminal domain RYU24_17590 PF01521 Iron-sulphur cluster biosynthesis RYU24_17600 PF00226 DnaJ domain RYU24_17600 PF07743 HSCB C-terminal oligomerisation domain RYU24_17610 PF00012 Hsp70 protein RYU24_17620 PF00111 2Fe-2S iron-sulfur cluster binding domain RYU24_17630 PF00211 Adenylate and Guanylate cyclase catalytic domain RYU24_17650 PF02559 CarD-like/TRCF domain RYU24_17650 PF00270 DEAD/DEAH box helicase RYU24_17650 PF17757 UvrB interaction domain RYU24_17650 PF00271 Helicase conserved C-terminal domain RYU24_17650 PF03461 TRCF domain RYU24_17670 PF10415 Fumarase C C-terminus RYU24_17670 PF00206 Lyase RYU24_17680 PF00474 Sodium:solute symporter family RYU24_17690 PF00474 Sodium:solute symporter family RYU24_17700 PF01037 Lrp/AsnC ligand binding domain RYU24_17710 PF00171 Aldehyde dehydrogenase family RYU24_17710 PF01619 Proline dehydrogenase RYU24_17710 PF14850 DNA-binding domain of Proline dehydrogenase RYU24_17710 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RYU24_17720 PF05958 tRNA (Uracil-5-)-methyltransferase RYU24_17760 PF01062 Bestrophin, RFP-TM, chloride channel RYU24_17770 PF00749 tRNA synthetases class I (E and Q), catalytic domain RYU24_17770 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RYU24_17780 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RYU24_17790 PF00149 Calcineurin-like phosphoesterase RYU24_17810 PF00665 Integrase core domain RYU24_17810 PF13276 HTH-like domain RYU24_17810 PF13333 Integrase core domain RYU24_17830 PF03328 HpcH/HpaI aldolase/citrate lyase family RYU24_17840 PF03328 HpcH/HpaI aldolase/citrate lyase family RYU24_17850 PF00881 Nitroreductase family RYU24_17880 PF01116 Fructose-bisphosphate aldolase class-II RYU24_17900 PF00162 Phosphoglycerate kinase RYU24_17920 PF02545 Maf-like protein RYU24_17930 PF08007 Cupin superfamily protein RYU24_17940 PF07730 Histidine kinase RYU24_17940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_17940 PF00672 HAMP domain RYU24_17950 PF00196 Bacterial regulatory proteins, luxR family RYU24_17950 PF00072 Response regulator receiver domain RYU24_17970 PF03737 Aldolase/RraA RYU24_17980 PF13460 NAD(P)H-binding RYU24_17990 PF01649 Ribosomal protein S20 RYU24_18010 PF00459 Inositol monophosphatase family RYU24_18020 PF13419 Haloacid dehalogenase-like hydrolase RYU24_18030 PF01479 S4 domain RYU24_18040 PF00154 recA bacterial DNA recombination protein RYU24_18050 PF02631 RecX family RYU24_18080 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RYU24_18080 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_18090 PF07977 FabA-like domain RYU24_18100 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RYU24_18100 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_18120 PF07244 Surface antigen variable number repeat RYU24_18120 PF01103 Surface antigen RYU24_18130 PF13180 PDZ domain RYU24_18130 PF17820 PDZ domain RYU24_18130 PF02163 Peptidase family M50 RYU24_18140 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RYU24_18140 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RYU24_18140 PF13288 DXP reductoisomerase C-terminal domain RYU24_18160 PF01255 Putative undecaprenyl diphosphate synthase RYU24_18170 PF01765 Ribosome recycling factor RYU24_18180 PF00696 Amino acid kinase family RYU24_18190 PF04055 Radical SAM superfamily RYU24_18190 PF18693 TRAM domain RYU24_18190 PF00919 Uncharacterized protein family UPF0004 RYU24_18200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_18200 PF00512 His Kinase A (phospho-acceptor) domain RYU24_18200 PF00989 PAS fold RYU24_18210 PF02954 Bacterial regulatory protein, Fis family RYU24_18210 PF00072 Response regulator receiver domain RYU24_18210 PF00158 Sigma-54 interaction domain RYU24_18230 PF13932 GidA associated domain RYU24_18230 PF01134 Glucose inhibited division protein A RYU24_18290 PF02954 Bacterial regulatory protein, Fis family RYU24_18300 PF01808 AICARFT/IMPCHase bienzyme RYU24_18300 PF02142 MGS-like domain RYU24_18310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RYU24_18310 PF02843 Phosphoribosylglycinamide synthetase, C domain RYU24_18310 PF02844 Phosphoribosylglycinamide synthetase, N domain RYU24_18340 PF03180 NLPA lipoprotein RYU24_18350 PF00005 ABC transporter RYU24_18350 PF09383 NIL domain RYU24_18360 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_18370 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RYU24_18370 PF14579 Helix-hairpin-helix motif RYU24_18370 PF02811 PHP domain RYU24_18370 PF01336 OB-fold nucleic acid binding domain RYU24_18370 PF07733 Bacterial DNA polymerase III alpha NTPase domain RYU24_18380 PF00588 SpoU rRNA Methylase family RYU24_18390 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_18430 PF01624 MutS domain I RYU24_18430 PF05188 MutS domain II RYU24_18430 PF05192 MutS domain III RYU24_18430 PF05190 MutS family domain IV RYU24_18430 PF00488 MutS domain V RYU24_18440 PF00037 4Fe-4S binding domain RYU24_18440 PF11953 Domain of unknown function (DUF3470) RYU24_18460 PF01596 O-methyltransferase RYU24_18490 PF01205 Uncharacterized protein family UPF0029 RYU24_18500 PF13533 Biotin-lipoyl like RYU24_18510 PF00664 ABC transporter transmembrane region RYU24_18510 PF00005 ABC transporter RYU24_18520 PF00664 ABC transporter transmembrane region RYU24_18520 PF00005 ABC transporter RYU24_18520 PF03412 Peptidase C39 family RYU24_18570 PF00005 ABC transporter RYU24_18570 PF12399 Branched-chain amino acid ATP-binding cassette transporter RYU24_18580 PF03968 OstA-like protein RYU24_18610 PF01380 SIS domain RYU24_18610 PF00571 CBS domain RYU24_18620 PF09190 DALR domain RYU24_18620 PF01406 tRNA synthetases class I (C) catalytic domain RYU24_18640 PF01527 Transposase RYU24_18650 PF13276 HTH-like domain RYU24_18650 PF00665 Integrase core domain RYU24_18660 PF13276 HTH-like domain RYU24_18660 PF00665 Integrase core domain RYU24_18660 PF13333 Integrase core domain RYU24_18690 PF01545 Cation efflux family RYU24_18710 PF00117 Glutamine amidotransferase class-I RYU24_18710 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RYU24_18720 PF04264 YceI-like domain RYU24_18750 PF02779 Transketolase, pyrimidine binding domain RYU24_18750 PF02780 Transketolase, C-terminal domain RYU24_18750 PF00456 Transketolase, thiamine diphosphate binding domain RYU24_18760 PF07963 Prokaryotic N-terminal methylation motif RYU24_18760 PF00114 Pilin (bacterial filament) RYU24_18770 PF02773 S-adenosylmethionine synthetase, C-terminal domain RYU24_18770 PF02772 S-adenosylmethionine synthetase, central domain RYU24_18770 PF00438 S-adenosylmethionine synthetase, N-terminal domain RYU24_18790 PF04143 Sulphur transport RYU24_18830 PF03060 Nitronate monooxygenase RYU24_18850 PF01207 Dihydrouridine synthase (Dus) RYU24_18860 PF07759 Protein of unknown function (DUF1615) RYU24_18880 PF00487 Fatty acid desaturase RYU24_18890 PF00970 Oxidoreductase FAD-binding domain RYU24_18890 PF00111 2Fe-2S iron-sulfur cluster binding domain RYU24_18890 PF00175 Oxidoreductase NAD-binding domain RYU24_18900 PF00440 Bacterial regulatory proteins, tetR family RYU24_18910 PF00561 alpha/beta hydrolase fold RYU24_18910 PF08386 TAP-like protein RYU24_18930 PF00271 Helicase conserved C-terminal domain RYU24_18930 PF18339 RapA N-terminal Tudor like domain 1 RYU24_18930 PF00176 SNF2 family N-terminal domain RYU24_18930 PF12137 RNA polymerase recycling family C-terminal RYU24_18930 PF18337 RapA N-terminal Tudor like domain RYU24_18940 PF00849 RNA pseudouridylate synthase RYU24_18970 PF03928 Haem-degrading RYU24_18980 PF00202 Aminotransferase class-III RYU24_18990 PF02581 Thiamine monophosphate synthase RYU24_19020 PF01928 CYTH domain RYU24_19070 PF05193 Peptidase M16 inactive domain RYU24_19070 PF00675 Insulinase (Peptidase family M16) RYU24_19080 PF02567 Phenazine biosynthesis-like protein RYU24_19100 PF00753 Metallo-beta-lactamase superfamily RYU24_19100 PF16123 Hydroxyacylglutathione hydrolase C-terminus RYU24_19130 PF08308 PEGA domain RYU24_19130 PF00069 Protein kinase domain RYU24_19180 PF13185 GAF domain RYU24_19180 PF00990 Diguanylate cyclase, GGDEF domain RYU24_19190 PF00814 Glycoprotease family RYU24_19200 PF01165 Ribosomal protein S21 RYU24_19210 PF09424 Yqey-like protein RYU24_19230 PF01435 Peptidase family M48 RYU24_19240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RYU24_19240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RYU24_19270 PF00156 Phosphoribosyl transferase domain RYU24_19290 PF01180 Dihydroorotate dehydrogenase RYU24_19330 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RYU24_19330 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RYU24_19340 PF00881 Nitroreductase family RYU24_19360 PF00270 DEAD/DEAH box helicase RYU24_19360 PF00271 Helicase conserved C-terminal domain RYU24_19370 PF00313 'Cold-shock' DNA-binding domain RYU24_19390 PF00140 Sigma-70 factor, region 1.2 RYU24_19390 PF04542 Sigma-70 region 2 RYU24_19390 PF04545 Sigma-70, region 4 RYU24_19400 PF04241 Protein of unknown function (DUF423) RYU24_19420 PF05690 Thiazole biosynthesis protein ThiG RYU24_19450 PF02525 Flavodoxin-like fold RYU24_19460 PF14497 Glutathione S-transferase, C-terminal domain RYU24_19460 PF02798 Glutathione S-transferase, N-terminal domain RYU24_19470 PF01740 STAS domain RYU24_19470 PF00916 Sulfate permease family RYU24_19480 PF02390 Putative methyltransferase RYU24_19520 PF00501 AMP-binding enzyme RYU24_19520 PF13193 AMP-binding enzyme C-terminal domain RYU24_19530 PF17925 Tetracyclin repressor-like, C-terminal domain RYU24_19530 PF00440 Bacterial regulatory proteins, tetR family RYU24_19540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_19540 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_19540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_19550 PF01039 Carboxyl transferase domain RYU24_19560 PF00378 Enoyl-CoA hydratase/isomerase RYU24_19570 PF18140 Propionyl-coenzyme A carboxylase BT domain RYU24_19570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RYU24_19570 PF00364 Biotin-requiring enzyme RYU24_19570 PF00289 Biotin carboxylase, N-terminal domain RYU24_19570 PF02785 Biotin carboxylase C-terminal domain RYU24_19580 PF00682 HMGL-like RYU24_19590 PF01144 Coenzyme A transferase RYU24_19600 PF01144 Coenzyme A transferase RYU24_19610 PF02667 Short chain fatty acid transporter RYU24_19620 PF01389 OmpA-like transmembrane domain RYU24_19620 PF00691 OmpA family RYU24_19630 PF01979 Amidohydrolase family RYU24_19640 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RYU24_19640 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RYU24_19660 PF10672 S-adenosylmethionine-dependent methyltransferase RYU24_19660 PF02926 THUMP domain RYU24_19660 PF01170 Putative RNA methylase family UPF0020 RYU24_19670 PF02861 Clp amino terminal domain, pathogenicity island component RYU24_19670 PF10431 C-terminal, D2-small domain, of ClpB protein RYU24_19670 PF17871 AAA lid domain RYU24_19670 PF07724 AAA domain (Cdc48 subfamily) RYU24_19670 PF00004 ATPase family associated with various cellular activities (AAA) RYU24_19690 PF00248 Aldo/keto reductase family RYU24_19700 PF00027 Cyclic nucleotide-binding domain RYU24_19700 PF13545 Crp-like helix-turn-helix domain RYU24_19710 PF02566 OsmC-like protein RYU24_19720 PF00149 Calcineurin-like phosphoesterase RYU24_19730 PF03971 Monomeric isocitrate dehydrogenase RYU24_19740 PF13340 Putative transposase of IS4/5 family (DUF4096) RYU24_19760 PF13559 Domain of unknown function (DUF4129) RYU24_19760 PF01841 Transglutaminase-like superfamily RYU24_19760 PF11992 Domain of unknown function (DUF3488) RYU24_19780 PF07726 ATPase family associated with various cellular activities (AAA) RYU24_19780 PF17863 AAA lid domain RYU24_19790 PF04328 Selenoprotein, putative RYU24_19800 PF13722 5TM C-terminal transporter carbon starvation CstA RYU24_19800 PF02554 Carbon starvation protein CstA RYU24_19810 PF08207 Elongation factor P (EF-P) KOW-like domain RYU24_19810 PF09285 Elongation factor P, C-terminal RYU24_19810 PF01132 Elongation factor P (EF-P) OB domain RYU24_19820 PF04055 Radical SAM superfamily RYU24_19850 PF01197 Ribosomal protein L31 RYU24_19860 PF13593 SBF-like CPA transporter family (DUF4137) RYU24_19870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RYU24_19880 PF07690 Major Facilitator Superfamily RYU24_19890 PF13654 AAA domain RYU24_19890 PF05362 Lon protease (S16) C-terminal proteolytic domain RYU24_19900 PF00462 Glutaredoxin RYU24_19910 PF00202 Aminotransferase class-III RYU24_19920 PF03466 LysR substrate binding domain RYU24_19920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_19930 PF01476 LysM domain RYU24_19930 PF01551 Peptidase family M23 RYU24_19940 PF01975 Survival protein SurE RYU24_19970 PF07943 Penicillin-binding protein 5, C-terminal domain RYU24_19970 PF00768 D-alanyl-D-alanine carboxypeptidase RYU24_19980 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_20000 PF00005 ABC transporter RYU24_20000 PF16326 ABC transporter C-terminal domain RYU24_20000 PF12848 ABC transporter RYU24_20010 PF12848 ABC transporter RYU24_20010 PF00005 ABC transporter RYU24_20020 PF01757 Acyltransferase family RYU24_20030 PF00293 NUDIX domain RYU24_20050 PF04356 Protein of unknown function (DUF489) RYU24_20060 PF00206 Lyase RYU24_20060 PF08328 Adenylosuccinate lyase C-terminal RYU24_20100 PF01343 Peptidase family S49 RYU24_20100 PF08496 Peptidase family S49 N-terminal RYU24_20120 PF00005 ABC transporter RYU24_20130 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_20140 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_20150 PF12849 PBP superfamily domain RYU24_20160 PF00324 Amino acid permease RYU24_20170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RYU24_20170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RYU24_20170 PF00205 Thiamine pyrophosphate enzyme, central domain RYU24_20180 PF01037 Lrp/AsnC ligand binding domain RYU24_20190 PF00171 Aldehyde dehydrogenase family RYU24_20200 PF00355 Rieske [2Fe-2S] domain RYU24_20210 PF00282 Pyridoxal-dependent decarboxylase conserved domain RYU24_20220 PF00202 Aminotransferase class-III RYU24_20240 PF01569 PAP2 superfamily RYU24_20250 PF01472 PUA domain RYU24_20250 PF00696 Amino acid kinase family RYU24_20260 PF01018 GTP1/OBG RYU24_20260 PF01926 50S ribosome-binding GTPase RYU24_20290 PF01638 HxlR-like helix-turn-helix RYU24_20300 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RYU24_20300 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RYU24_20310 PF00892 EamA-like transporter family RYU24_20320 PF08212 Lipocalin-like domain RYU24_20330 PF17757 UvrB interaction domain RYU24_20330 PF12344 Ultra-violet resistance protein B RYU24_20330 PF00271 Helicase conserved C-terminal domain RYU24_20330 PF02151 UvrB/uvrC motif RYU24_20330 PF04851 Type III restriction enzyme, res subunit RYU24_20420 PF03812 2-keto-3-deoxygluconate permease RYU24_20430 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RYU24_20430 PF08666 SAF domain RYU24_20440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_20440 PF03466 LysR substrate binding domain RYU24_20450 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_20450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RYU24_20460 PF04055 Radical SAM superfamily RYU24_20470 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_20470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_20470 PF09317 Domain of unknown function (DUF1974) RYU24_20470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_20490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RYU24_20490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RYU24_20500 PF00860 Permease family RYU24_20510 PF01613 Flavin reductase like domain RYU24_20520 PF01042 Endoribonuclease L-PSP RYU24_20530 PF00857 Isochorismatase family RYU24_20540 PF00296 Luciferase-like monooxygenase RYU24_20550 PF12697 Alpha/beta hydrolase family RYU24_20570 PF13180 PDZ domain RYU24_20580 PF01784 NIF3 (NGG1p interacting factor 3) RYU24_20590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RYU24_20590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RYU24_20630 PF01040 UbiA prenyltransferase family RYU24_20640 PF04345 Chorismate lyase RYU24_20660 PF00120 Glutamine synthetase, catalytic domain RYU24_20660 PF03951 Glutamine synthetase, beta-Grasp domain RYU24_20670 PF13340 Putative transposase of IS4/5 family (DUF4096) RYU24_20680 PF00117 Glutamine amidotransferase class-I RYU24_20690 PF00591 Glycosyl transferase family, a/b domain RYU24_20690 PF02885 Glycosyl transferase family, helical bundle domain RYU24_20700 PF00218 Indole-3-glycerol phosphate synthase RYU24_20720 PF01227 GTP cyclohydrolase I RYU24_20750 PF00990 Diguanylate cyclase, GGDEF domain RYU24_20780 PF05675 Protein of unknown function (DUF817) RYU24_20790 PF01208 Uroporphyrinogen decarboxylase (URO-D) RYU24_20810 PF02678 Pirin RYU24_20810 PF17954 Quercetinase C-terminal cupin domain RYU24_20820 PF05175 Methyltransferase small domain RYU24_20850 PF18146 Damage-inducible protein CinA KH domain RYU24_20850 PF00994 Probable molybdopterin binding domain RYU24_20850 PF02464 Competence-damaged protein RYU24_20880 PF00313 'Cold-shock' DNA-binding domain RYU24_20890 PF00390 Malic enzyme, N-terminal domain RYU24_20890 PF03949 Malic enzyme, NAD binding domain RYU24_20910 PF02472 Biopolymer transport protein ExbD/TolR RYU24_20920 PF01618 MotA/TolQ/ExbB proton channel family RYU24_20930 PF02333 Phytase RYU24_20950 PF00072 Response regulator receiver domain RYU24_20950 PF00990 Diguanylate cyclase, GGDEF domain RYU24_20960 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RYU24_20960 PF12833 Helix-turn-helix domain RYU24_20980 PF00245 Alkaline phosphatase RYU24_20990 PF00245 Alkaline phosphatase RYU24_21010 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_21010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RYU24_21030 PF00764 Arginosuccinate synthase RYU24_21040 PF08448 PAS fold RYU24_21040 PF00990 Diguanylate cyclase, GGDEF domain RYU24_21050 PF01979 Amidohydrolase family RYU24_21060 PF00929 Exonuclease RYU24_21070 PF00324 Amino acid permease RYU24_21080 PF00324 Amino acid permease RYU24_21130 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_21130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RYU24_21140 PF12911 N-terminal TM domain of oligopeptide transport permease C RYU24_21140 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_21150 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_21160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RYU24_21170 PF01476 LysM domain RYU24_21170 PF01464 Transglycosylase SLT domain RYU24_21180 PF00929 Exonuclease RYU24_21200 PF09297 NADH pyrophosphatase zinc ribbon domain RYU24_21200 PF00293 NUDIX domain RYU24_21210 PF07859 alpha/beta hydrolase fold RYU24_21220 PF04972 BON domain RYU24_21230 PF02021 Uncharacterised protein family UPF0102 RYU24_21240 PF04348 LppC putative lipoprotein RYU24_21250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RYU24_21270 PF01494 FAD binding domain RYU24_21280 PF01494 FAD binding domain RYU24_21300 PF13737 Transposase DDE domain RYU24_21330 PF04070 Domain of unknown function (DUF378) RYU24_21340 PF05195 Aminopeptidase P, N-terminal domain RYU24_21340 PF00557 Metallopeptidase family M24 RYU24_21350 PF03695 Uncharacterised protein family (UPF0149) RYU24_21380 PF01812 5-formyltetrahydrofolate cyclo-ligase family RYU24_21390 PF00004 ATPase family associated with various cellular activities (AAA) RYU24_21390 PF05362 Lon protease (S16) C-terminal proteolytic domain RYU24_21390 PF02190 ATP-dependent protease La (LON) substrate-binding domain RYU24_21400 PF04389 Peptidase family M28 RYU24_21410 PF02590 Predicted SPOUT methyltransferase RYU24_21420 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RYU24_21440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RYU24_21440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RYU24_21450 PF04060 Putative Fe-S cluster RYU24_21460 PF10576 Iron-sulfur binding domain of endonuclease III RYU24_21460 PF00633 Helix-hairpin-helix motif RYU24_21460 PF00730 HhH-GPD superfamily base excision DNA repair protein RYU24_21480 PF05191 Adenylate kinase, active site lid RYU24_21510 PF03717 Penicillin-binding Protein dimerisation domain RYU24_21510 PF00905 Penicillin binding protein transpeptidase domain RYU24_21570 PF01553 Acyltransferase RYU24_21610 PF00118 TCP-1/cpn60 chaperonin family RYU24_21620 PF00166 Chaperonin 10 Kd subunit RYU24_21640 PF00781 Diacylglycerol kinase catalytic domain RYU24_21650 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RYU24_21650 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RYU24_21660 PF00083 Sugar (and other) transporter RYU24_21690 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RYU24_21690 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RYU24_21720 PF14765 Polyketide synthase dehydratase RYU24_21720 PF08240 Alcohol dehydrogenase GroES-like domain RYU24_21720 PF08659 KR domain RYU24_21720 PF00550 Phosphopantetheine attachment site RYU24_21720 PF00698 Acyl transferase domain RYU24_21750 PF00085 Thioredoxin RYU24_21800 PF00009 Elongation factor Tu GTP binding domain RYU24_21810 PF01507 Phosphoadenosine phosphosulfate reductase family RYU24_21840 PF15975 Flotillin RYU24_21840 PF01145 SPFH domain / Band 7 family RYU24_21850 PF00549 CoA-ligase RYU24_21850 PF02629 CoA binding domain RYU24_21860 PF00549 CoA-ligase RYU24_21860 PF08442 ATP-grasp domain RYU24_21870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RYU24_21870 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_21880 PF00364 Biotin-requiring enzyme RYU24_21880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RYU24_21880 PF02817 e3 binding domain RYU24_21890 PF16078 2-oxoglutarate dehydrogenase N-terminus RYU24_21890 PF16870 2-oxoglutarate dehydrogenase C-terminal RYU24_21890 PF02779 Transketolase, pyrimidine binding domain RYU24_21890 PF00676 Dehydrogenase E1 component RYU24_21900 PF13085 2Fe-2S iron-sulfur cluster binding domain RYU24_21910 PF02910 Fumarate reductase flavoprotein C-term RYU24_21910 PF00890 FAD binding domain RYU24_21920 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RYU24_21930 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RYU24_21940 PF00285 Citrate synthase, C-terminal domain RYU24_21960 PF02540 NAD synthase RYU24_21960 PF00795 Carbon-nitrogen hydrolase RYU24_21980 PF00582 Universal stress protein family RYU24_21990 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RYU24_22000 PF00999 Sodium/hydrogen exchanger family RYU24_22020 PF04228 Putative neutral zinc metallopeptidase RYU24_22030 PF05661 Protein of unknown function (DUF808) RYU24_22040 PF00579 tRNA synthetases class I (W and Y) RYU24_22070 PF14052 Capsule assembly protein Wzi RYU24_22080 PF00152 tRNA synthetases class II (D, K and N) RYU24_22080 PF01336 OB-fold nucleic acid binding domain RYU24_22100 PF00156 Phosphoribosyl transferase domain RYU24_22110 PF00301 Rubredoxin RYU24_22120 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_22120 PF18113 Rubredoxin binding C-terminal domain RYU24_22130 PF00561 alpha/beta hydrolase fold RYU24_22140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_22140 PF03466 LysR substrate binding domain RYU24_22160 PF13089 Polyphosphate kinase N-terminal domain RYU24_22160 PF17941 Polyphosphate kinase C-terminal domain 1 RYU24_22160 PF13090 Polyphosphate kinase C-terminal domain 2 RYU24_22160 PF02503 Polyphosphate kinase middle domain RYU24_22170 PF00912 Transglycosylase RYU24_22180 PF01694 Rhomboid family RYU24_22200 PF00005 ABC transporter RYU24_22210 PF13472 GDSL-like Lipase/Acylhydrolase family RYU24_22220 PF00484 Carbonic anhydrase RYU24_22230 PF00561 alpha/beta hydrolase fold RYU24_22250 PF07715 TonB-dependent Receptor Plug Domain RYU24_22250 PF00593 TonB dependent receptor RYU24_22260 PF01521 Iron-sulphur cluster biosynthesis RYU24_22260 PF01106 NifU-like domain RYU24_22280 PF01497 Periplasmic binding protein RYU24_22300 PF01384 Phosphate transporter family RYU24_22310 PF02574 Homocysteine S-methyltransferase RYU24_22310 PF00809 Pterin binding enzyme RYU24_22310 PF02965 Vitamin B12 dependent methionine synthase, activation domain RYU24_22310 PF02607 B12 binding domain RYU24_22310 PF02310 B12 binding domain RYU24_22330 PF13737 Transposase DDE domain RYU24_22350 PF13333 Integrase core domain RYU24_22350 PF13276 HTH-like domain RYU24_22350 PF00665 Integrase core domain RYU24_22370 PF04480 Protein of unknown function (DUF559) RYU24_22380 PF02733 Dak1 domain RYU24_22390 PF04960 Glutaminase RYU24_22420 PF08264 Anticodon-binding domain of tRNA RYU24_22420 PF00133 tRNA synthetases class I (I, L, M and V) RYU24_22420 PF10458 Valyl tRNA synthetase tRNA binding arm RYU24_22450 PF13340 Putative transposase of IS4/5 family (DUF4096) RYU24_22480 PF00194 Eukaryotic-type carbonic anhydrase RYU24_22490 PF04239 Protein of unknown function (DUF421) RYU24_22500 PF13419 Haloacid dehalogenase-like hydrolase RYU24_22540 PF01734 Patatin-like phospholipase RYU24_22560 PF01145 SPFH domain / Band 7 family RYU24_22570 PF00474 Sodium:solute symporter family RYU24_22580 PF00348 Polyprenyl synthetase RYU24_22590 PF04303 PrpF protein RYU24_22600 PF00324 Amino acid permease RYU24_22640 PF01507 Phosphoadenosine phosphosulfate reductase family RYU24_22650 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RYU24_22650 PF06974 Protein of unknown function (DUF1298) RYU24_22670 PF00575 S1 RNA binding domain RYU24_22670 PF10150 Ribonuclease E/G family RYU24_22680 PF02545 Maf-like protein RYU24_22690 PF04093 rod shape-determining protein MreD RYU24_22700 PF04085 rod shape-determining protein MreC RYU24_22720 PF02686 Glu-tRNAGln amidotransferase C subunit RYU24_22730 PF01425 Amidase RYU24_22740 PF02637 GatB domain RYU24_22740 PF02934 GatB/GatE catalytic domain RYU24_22780 PF00892 EamA-like transporter family RYU24_22800 PF01431 Peptidase family M13 RYU24_22800 PF05649 Peptidase family M13 RYU24_22810 PF01431 Peptidase family M13 RYU24_22810 PF05649 Peptidase family M13 RYU24_22830 PF05992 SbmA/BacA-like family RYU24_22850 PF02358 Trehalose-phosphatase RYU24_22860 PF00982 Glycosyltransferase family 20 RYU24_22870 PF07690 Major Facilitator Superfamily RYU24_22890 PF05401 Nodulation protein S (NodS) RYU24_22930 PF06628 Catalase-related immune-responsive RYU24_22930 PF18011 C-terminal domain found in long catalases RYU24_22930 PF00199 Catalase RYU24_22940 PF00210 Ferritin-like domain RYU24_22950 PF13936 Helix-turn-helix domain RYU24_22950 PF00665 Integrase core domain RYU24_22960 PF00990 Diguanylate cyclase, GGDEF domain RYU24_22960 PF07694 5TMR of 5TMR-LYT RYU24_22970 PF03707 Bacterial signalling protein N terminal repeat RYU24_22970 PF00990 Diguanylate cyclase, GGDEF domain RYU24_22970 PF00563 EAL domain RYU24_22980 PF00005 ABC transporter RYU24_22980 PF03459 TOBE domain RYU24_22990 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_23010 PF00994 Probable molybdopterin binding domain RYU24_23010 PF03454 MoeA C-terminal region (domain IV) RYU24_23010 PF03453 MoeA N-terminal region (domain I and II) RYU24_23020 PF00994 Probable molybdopterin binding domain RYU24_23020 PF01967 MoaC family RYU24_23030 PF02391 MoaE protein RYU24_23050 PF06463 Molybdenum Cofactor Synthesis C RYU24_23050 PF04055 Radical SAM superfamily RYU24_23060 PF12804 MobA-like NTP transferase domain RYU24_23070 PF01568 Molydopterin dinucleotide binding domain RYU24_23070 PF00384 Molybdopterin oxidoreductase RYU24_23070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RYU24_23070 PF04324 BFD-like [2Fe-2S] binding domain RYU24_23080 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_23080 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RYU24_23080 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RYU24_23080 PF18267 Rubredoxin NAD+ reductase C-terminal domain RYU24_23080 PF04324 BFD-like [2Fe-2S] binding domain RYU24_23090 PF04324 BFD-like [2Fe-2S] binding domain RYU24_23090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RYU24_23090 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_23090 PF18267 Rubredoxin NAD+ reductase C-terminal domain RYU24_23090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RYU24_23100 PF07690 Major Facilitator Superfamily RYU24_23130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RYU24_23140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RYU24_23150 PF00324 Amino acid permease RYU24_23160 PF00155 Aminotransferase class I and II RYU24_23190 PF14497 Glutathione S-transferase, C-terminal domain RYU24_23190 PF02798 Glutathione S-transferase, N-terminal domain RYU24_23210 PF01144 Coenzyme A transferase RYU24_23220 PF01144 Coenzyme A transferase RYU24_23230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RYU24_23230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RYU24_23240 PF07690 Major Facilitator Superfamily RYU24_23250 PF00529 HlyD membrane-fusion protein of T1SS RYU24_23250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RYU24_23260 PF03061 Thioesterase superfamily RYU24_23270 PF00490 Delta-aminolevulinic acid dehydratase RYU24_23280 PF01266 FAD dependent oxidoreductase RYU24_23290 PF08338 Domain of unknown function (DUF1731) RYU24_23290 PF01370 NAD dependent epimerase/dehydratase family RYU24_23330 PF00809 Pterin binding enzyme RYU24_23340 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RYU24_23340 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RYU24_23340 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RYU24_23340 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RYU24_23360 PF13610 DDE domain RYU24_23380 PF01443 Viral (Superfamily 1) RNA helicase RYU24_23380 PF17841 BID domain of Bartonella effector protein (Bep) RYU24_23380 PF03389 MobA/MobL family RYU24_23420 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase RYU24_23430 PF01636 Phosphotransferase enzyme family RYU24_23470 PF12320 Type 5 capsule protein repressor C-terminal domain RYU24_23470 PF00149 Calcineurin-like phosphoesterase RYU24_23500 PF01168 Alanine racemase, N-terminal domain RYU24_23510 PF00437 Type II/IV secretion system protein RYU24_23520 PF00437 Type II/IV secretion system protein RYU24_23530 PF01475 Ferric uptake regulator family RYU24_23540 PF04355 SmpA / OmlA family RYU24_23550 PF03658 RnfH family Ubiquitin RYU24_23570 PF01814 Hemerythrin HHE cation binding domain RYU24_23580 PF13230 Glutamine amidotransferases class-II RYU24_23590 PF00696 Amino acid kinase family RYU24_23600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RYU24_23600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RYU24_23600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RYU24_23600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RYU24_23610 PF00692 dUTPase RYU24_23620 PF13361 UvrD-like helicase C-terminal domain RYU24_23620 PF00580 UvrD/REP helicase N-terminal domain RYU24_23630 PF13488 Glycine zipper RYU24_23630 PF00691 OmpA family RYU24_23640 PF01553 Acyltransferase RYU24_23660 PF03775 Septum formation inhibitor MinC, C-terminal domain RYU24_23670 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RYU24_23680 PF03776 Septum formation topological specificity factor MinE RYU24_23700 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RYU24_23700 PF17854 FtsK alpha domain RYU24_23700 PF09397 Ftsk gamma domain RYU24_23700 PF01580 FtsK/SpoIIIE family RYU24_23710 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_23720 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RYU24_23730 PF04376 Arginine-tRNA-protein transferase, N terminus RYU24_23730 PF04377 Arginine-tRNA-protein transferase, C terminus RYU24_23740 PF00583 Acetyltransferase (GNAT) family RYU24_23760 PF00009 Elongation factor Tu GTP binding domain RYU24_23760 PF03144 Elongation factor Tu domain 2 RYU24_23760 PF03143 Elongation factor Tu C-terminal domain RYU24_23770 PF00009 Elongation factor Tu GTP binding domain RYU24_23770 PF03144 Elongation factor Tu domain 2 RYU24_23770 PF03764 Elongation factor G, domain IV RYU24_23770 PF14492 Elongation Factor G, domain II RYU24_23770 PF00679 Elongation factor G C-terminus RYU24_23780 PF00177 Ribosomal protein S7p/S5e RYU24_23790 PF00164 Ribosomal protein S12/S23 RYU24_23810 PF02801 Beta-ketoacyl synthase, C-terminal domain RYU24_23810 PF00109 Beta-ketoacyl synthase, N-terminal domain RYU24_23820 PF03653 Uncharacterised protein family (UPF0093) RYU24_23830 PF00324 Amino acid permease RYU24_23840 PF01042 Endoribonuclease L-PSP RYU24_23850 PF00842 Alanine racemase, C-terminal domain RYU24_23850 PF01168 Alanine racemase, N-terminal domain RYU24_23860 PF01266 FAD dependent oxidoreductase RYU24_23870 PF01037 Lrp/AsnC ligand binding domain RYU24_23880 PF04972 BON domain RYU24_23880 PF01476 LysM domain RYU24_23890 PF00550 Phosphopantetheine attachment site RYU24_23910 PF00698 Acyl transferase domain RYU24_23920 PF01783 Ribosomal L32p protein family RYU24_23930 PF02620 Large ribosomal RNA subunit accumulation protein YceD RYU24_23940 PF04315 Elongation factor P hydroxylase RYU24_23950 PF01300 Telomere recombination RYU24_23980 PF02616 Segregation and condensation protein ScpA RYU24_23990 PF04079 Segregation and condensation complex subunit ScpB RYU24_24000 PF00849 RNA pseudouridylate synthase RYU24_24000 PF01479 S4 domain RYU24_24010 PF00005 ABC transporter RYU24_24010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RYU24_24020 PF12911 N-terminal TM domain of oligopeptide transport permease C RYU24_24020 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_24030 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_24040 PF01432 Peptidase family M3 RYU24_24060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RYU24_24070 PF07715 TonB-dependent Receptor Plug Domain RYU24_24070 PF00593 TonB dependent receptor RYU24_24080 PF03544 Gram-negative bacterial TonB protein C-terminal RYU24_24090 PF01618 MotA/TolQ/ExbB proton channel family RYU24_24100 PF02472 Biopolymer transport protein ExbD/TolR RYU24_24110 PF02472 Biopolymer transport protein ExbD/TolR RYU24_24120 PF00210 Ferritin-like domain RYU24_24130 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RYU24_24140 PF05971 RNA methyltransferase RYU24_24150 PF00533 BRCA1 C Terminus (BRCT) domain RYU24_24150 PF01653 NAD-dependent DNA ligase adenylation domain RYU24_24150 PF03120 NAD-dependent DNA ligase OB-fold domain RYU24_24150 PF12826 Helix-hairpin-helix motif RYU24_24150 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RYU24_24170 PF02463 RecF/RecN/SMC N terminal domain RYU24_24170 PF06470 SMC proteins Flexible Hinge Domain RYU24_24190 PF01925 Sulfite exporter TauE/SafE RYU24_24200 PF02237 Biotin protein ligase C terminal domain RYU24_24200 PF08279 HTH domain RYU24_24200 PF03099 Biotin/lipoate A/B protein ligase family RYU24_24210 PF03309 Type III pantothenate kinase RYU24_24220 PF06821 Serine hydrolase RYU24_24240 PF02881 SRP54-type protein, helical bundle domain RYU24_24240 PF02978 Signal peptide binding domain RYU24_24240 PF00448 SRP54-type protein, GTPase domain RYU24_24260 PF13276 HTH-like domain RYU24_24260 PF00665 Integrase core domain RYU24_24260 PF13333 Integrase core domain RYU24_24280 PF08241 Methyltransferase domain RYU24_24290 PF00132 Bacterial transferase hexapeptide (six repeats) RYU24_24300 PF08223 PaaX-like protein C-terminal domain RYU24_24300 PF07848 PaaX-like protein RYU24_24310 PF14535 AMP-binding enzyme C-terminal domain RYU24_24310 PF00501 AMP-binding enzyme RYU24_24320 PF02803 Thiolase, C-terminal domain RYU24_24320 PF00108 Thiolase, N-terminal domain RYU24_24330 PF00378 Enoyl-CoA hydratase/isomerase RYU24_24340 PF00111 2Fe-2S iron-sulfur cluster binding domain RYU24_24340 PF00970 Oxidoreductase FAD-binding domain RYU24_24340 PF00175 Oxidoreductase NAD-binding domain RYU24_24350 PF01883 Iron-sulfur cluster assembly protein RYU24_24360 PF05138 Phenylacetic acid catabolic protein RYU24_24370 PF06243 Phenylacetic acid degradation B RYU24_24380 PF05138 Phenylacetic acid catabolic protein RYU24_24390 PF00171 Aldehyde dehydrogenase family RYU24_24390 PF01575 MaoC like domain RYU24_24400 PF07690 Major Facilitator Superfamily RYU24_24410 PF01207 Dihydrouridine synthase (Dus) RYU24_24420 PF08378 Nuclease-related domain RYU24_24430 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RYU24_24430 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RYU24_24440 PF00893 Small Multidrug Resistance protein RYU24_24450 PF00834 Ribulose-phosphate 3 epimerase family RYU24_24480 PF05987 Bacterial protein of unknown function (DUF898) RYU24_24490 PF00756 Putative esterase RYU24_24510 PF04445 Putative SAM-dependent methyltransferase RYU24_24520 PF02673 Bacitracin resistance protein BacA RYU24_24530 PF00814 Glycoprotease family RYU24_24550 PF00293 NUDIX domain RYU24_24630 PF00425 chorismate binding enzyme RYU24_24630 PF04715 Anthranilate synthase component I, N terminal region RYU24_24640 PF00155 Aminotransferase class I and II RYU24_24650 PF00815 Histidinol dehydrogenase RYU24_24660 PF01634 ATP phosphoribosyltransferase RYU24_24670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RYU24_24680 PF01722 BolA-like protein RYU24_24690 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RYU24_24700 PF00309 Sigma-54 factor, Activator interacting domain (AID) RYU24_24700 PF04963 Sigma-54 factor, core binding domain RYU24_24700 PF04552 Sigma-54, DNA binding domain RYU24_24710 PF02445 Quinolinate synthetase A protein RYU24_24720 PF01960 ArgJ family RYU24_24740 PF02810 SEC-C motif RYU24_24740 PF07517 SecA DEAD-like domain RYU24_24740 PF01043 SecA preprotein cross-linking domain RYU24_24740 PF07516 SecA Wing and Scaffold domain RYU24_24750 PF10417 C-terminal domain of 1-Cys peroxiredoxin RYU24_24750 PF00578 AhpC/TSA family RYU24_24780 PF08245 Mur ligase middle domain RYU24_24780 PF02875 Mur ligase family, glutamate ligase domain RYU24_24790 PF01039 Carboxyl transferase domain RYU24_24800 PF00290 Tryptophan synthase alpha chain RYU24_24850 PF00291 Pyridoxal-phosphate dependent enzyme RYU24_24860 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RYU24_24870 PF07715 TonB-dependent Receptor Plug Domain RYU24_24870 PF00593 TonB dependent receptor RYU24_24880 PF01923 Cobalamin adenosyltransferase RYU24_24890 PF13340 Putative transposase of IS4/5 family (DUF4096) RYU24_24920 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RYU24_24930 PF04237 YjbR RYU24_24950 PF00324 Amino acid permease RYU24_24970 PF00072 Response regulator receiver domain RYU24_24970 PF00486 Transcriptional regulatory protein, C terminal RYU24_24980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_24980 PF00672 HAMP domain RYU24_24980 PF00512 His Kinase A (phospho-acceptor) domain RYU24_25000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_25000 PF12806 Acetyl-CoA dehydrogenase C-terminal like RYU24_25000 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_25000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_25010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RYU24_25010 PF12806 Acetyl-CoA dehydrogenase C-terminal like RYU24_25010 PF02770 Acyl-CoA dehydrogenase, middle domain RYU24_25010 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_25030 PF06146 Phosphate-starvation-inducible E RYU24_25070 PF00593 TonB dependent receptor RYU24_25070 PF07715 TonB-dependent Receptor Plug Domain RYU24_25090 PF00152 tRNA synthetases class II (D, K and N) RYU24_25090 PF01336 OB-fold nucleic acid binding domain RYU24_25090 PF02938 GAD domain RYU24_25170 PF17101 Stealth protein CR1, conserved region 1 RYU24_25170 PF11380 Stealth protein CR2, conserved region 2 RYU24_25170 PF17102 Stealth protein CR3, conserved region 3 RYU24_25190 PF01063 Amino-transferase class IV RYU24_25200 PF08335 GlnD PII-uridylyltransferase RYU24_25200 PF03710 Glutamate-ammonia ligase adenylyltransferase RYU24_25210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_25210 PF00512 His Kinase A (phospho-acceptor) domain RYU24_25220 PF04751 Protein of unknown function (DUF615) RYU24_25230 PF00381 PTS HPr component phosphorylation site RYU24_25240 PF03668 P-loop ATPase protein family RYU24_25250 PF02569 Pantoate-beta-alanine ligase RYU24_25260 PF02548 Ketopantoate hydroxymethyltransferase RYU24_25270 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RYU24_25280 PF12627 Probable RNA and SrmB- binding site of polymerase A RYU24_25280 PF12626 Polymerase A arginine-rich C-terminus RYU24_25280 PF01743 Poly A polymerase head domain RYU24_25290 PF10531 SLBB domain RYU24_25300 PF03819 MazG nucleotide pyrophosphohydrolase domain RYU24_25310 PF00106 short chain dehydrogenase RYU24_25340 PF07282 Putative transposase DNA-binding domain RYU24_25340 PF01385 Probable transposase RYU24_25340 PF12323 Helix-turn-helix domain RYU24_25350 PF01797 Transposase IS200 like RYU24_25400 PF01926 50S ribosome-binding GTPase RYU24_25400 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RYU24_25410 PF13360 PQQ-like domain RYU24_25430 PF03129 Anticodon binding domain RYU24_25430 PF13393 Histidyl-tRNA synthetase RYU24_25440 PF04551 GcpE protein RYU24_25450 PF13464 Domain of unknown function (DUF4115) RYU24_25470 PF04055 Radical SAM superfamily RYU24_25480 PF00334 Nucleoside diphosphate kinase RYU24_25490 PF04384 Iron-sulphur cluster assembly RYU24_25500 PF01569 PAP2 superfamily RYU24_25510 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RYU24_25510 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RYU24_25520 PF10369 Small subunit of acetolactate synthase RYU24_25530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RYU24_25530 PF00205 Thiamine pyrophosphate enzyme, central domain RYU24_25530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RYU24_25550 PF08264 Anticodon-binding domain of tRNA RYU24_25550 PF00133 tRNA synthetases class I (I, L, M and V) RYU24_25550 PF13603 Leucyl-tRNA synthetase, Domain 2 RYU24_25550 PF09334 tRNA synthetases class I (M) RYU24_25580 PF01814 Hemerythrin HHE cation binding domain RYU24_25590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RYU24_25600 PF00005 ABC transporter RYU24_25600 PF02687 FtsX-like permease family RYU24_25600 PF12704 MacB-like periplasmic core domain RYU24_25610 PF02321 Outer membrane efflux protein RYU24_25630 PF00899 ThiF family RYU24_25650 PF00929 Exonuclease RYU24_25660 PF03193 RsgA GTPase RYU24_25680 PF00462 Glutaredoxin RYU24_25690 PF02556 Preprotein translocase subunit SecB RYU24_25720 PF01026 TatD related DNase RYU24_25750 PF00009 Elongation factor Tu GTP binding domain RYU24_25750 PF03144 Elongation factor Tu domain 2 RYU24_25750 PF16658 Class II release factor RF3, C-terminal domain RYU24_25780 PF01580 FtsK/SpoIIIE family RYU24_25780 PF09397 Ftsk gamma domain RYU24_25780 PF17854 FtsK alpha domain RYU24_25800 PF02661 Fic/DOC family RYU24_25800 PF13784 Fic/DOC family N-terminal RYU24_25820 PF04851 Type III restriction enzyme, res subunit RYU24_25820 PF08774 VRR-NUC domain RYU24_25830 PF01555 DNA methylase RYU24_25830 PF18273 Type III R-M EcoP15I C-terminal domain RYU24_25840 PF13737 Transposase DDE domain RYU24_25850 PF00860 Permease family RYU24_25860 PF03502 Nucleoside-specific channel-forming protein, Tsx RYU24_25890 PF03466 LysR substrate binding domain RYU24_25890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_25900 PF02608 ABC transporter substrate-binding protein PnrA-like RYU24_25910 PF02608 ABC transporter substrate-binding protein PnrA-like RYU24_25930 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RYU24_25930 PF03171 2OG-Fe(II) oxygenase superfamily RYU24_25950 PF00355 Rieske [2Fe-2S] domain RYU24_25960 PF13737 Transposase DDE domain RYU24_26120 PF00990 Diguanylate cyclase, GGDEF domain RYU24_26120 PF03707 Bacterial signalling protein N terminal repeat RYU24_26120 PF00563 EAL domain RYU24_26130 PF17804 Tail specific protease N-terminal domain RYU24_26130 PF03572 Peptidase family S41 RYU24_26130 PF00595 PDZ domain RYU24_26130 PF11818 C-terminal domain of tail specific protease (DUF3340) RYU24_26140 PF00933 Glycosyl hydrolase family 3 N terminal domain RYU24_26170 PF00171 Aldehyde dehydrogenase family RYU24_26180 PF00871 Acetokinase family RYU24_26190 PF07085 DRTGG domain RYU24_26190 PF01515 Phosphate acetyl/butaryl transferase RYU24_26210 PF05681 Fumarate hydratase (Fumerase) RYU24_26210 PF05683 Fumarase C-terminus RYU24_26230 PF07724 AAA domain (Cdc48 subfamily) RYU24_26230 PF10431 C-terminal, D2-small domain, of ClpB protein RYU24_26230 PF06689 ClpX C4-type zinc finger RYU24_26240 PF00574 Clp protease RYU24_26250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RYU24_26250 PF05698 Bacterial trigger factor protein (TF) C-terminus RYU24_26250 PF05697 Bacterial trigger factor protein (TF) RYU24_26260 PF07715 TonB-dependent Receptor Plug Domain RYU24_26260 PF00593 TonB dependent receptor RYU24_26270 PF13640 2OG-Fe(II) oxygenase superfamily RYU24_26270 PF18331 PKHD-type hydroxylase C-terminal domain RYU24_26280 PF08502 LeuA allosteric (dimerisation) domain RYU24_26280 PF00682 HMGL-like RYU24_26290 PF00561 alpha/beta hydrolase fold RYU24_26300 PF00561 alpha/beta hydrolase fold RYU24_26300 PF07021 Methionine biosynthesis protein MetW RYU24_26330 PF01725 Ham1 family RYU24_26360 PF01790 Prolipoprotein diacylglyceryl transferase RYU24_26400 PF08212 Lipocalin-like domain RYU24_26410 PF00303 Thymidylate synthase RYU24_26420 PF00186 Dihydrofolate reductase RYU24_26450 PF01625 Peptide methionine sulfoxide reductase RYU24_26470 PF01618 MotA/TolQ/ExbB proton channel family RYU24_26490 PF01842 ACT domain RYU24_26490 PF00551 Formyl transferase RYU24_26500 PF00440 Bacterial regulatory proteins, tetR family RYU24_26500 PF08360 QacR-like protein, C-terminal region RYU24_26510 PF00171 Aldehyde dehydrogenase family RYU24_26520 PF00830 Ribosomal L28 family RYU24_26530 PF00471 Ribosomal protein L33 RYU24_26540 PF00999 Sodium/hydrogen exchanger family RYU24_26540 PF02254 TrkA-N domain RYU24_26570 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RYU24_26580 PF00580 UvrD/REP helicase N-terminal domain RYU24_26580 PF13361 UvrD-like helicase C-terminal domain RYU24_26590 PF02595 Glycerate kinase family RYU24_26630 PF08272 Topoisomerase I zinc-ribbon-like RYU24_26630 PF01131 DNA topoisomerase RYU24_26630 PF01751 Toprim domain RYU24_26630 PF01396 Topoisomerase DNA binding C4 zinc finger RYU24_26670 PF04102 SlyX RYU24_26680 PF00005 ABC transporter RYU24_26680 PF16326 ABC transporter C-terminal domain RYU24_26680 PF12848 ABC transporter RYU24_26690 PF03279 Bacterial lipid A biosynthesis acyltransferase RYU24_26720 PF01118 Semialdehyde dehydrogenase, NAD binding domain RYU24_26720 PF02774 Semialdehyde dehydrogenase, dimerisation domain RYU24_26760 PF01416 tRNA pseudouridine synthase RYU24_26780 PF01176 Translation initiation factor 1A / IF-1 RYU24_26820 PF00180 Isocitrate/isopropylmalate dehydrogenase RYU24_26840 PF00694 Aconitase C-terminal domain RYU24_26850 PF00330 Aconitase family (aconitate hydratase) RYU24_26870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_26870 PF03466 LysR substrate binding domain RYU24_26910 PF00293 NUDIX domain RYU24_26920 PF00391 PEP-utilising enzyme, mobile domain RYU24_26920 PF01590 GAF domain RYU24_26920 PF02896 PEP-utilising enzyme, TIM barrel domain RYU24_26920 PF05524 PEP-utilising enzyme, N-terminal RYU24_26950 PF00199 Catalase RYU24_26950 PF06628 Catalase-related immune-responsive RYU24_26960 PF00141 Peroxidase RYU24_26970 PF00141 Peroxidase RYU24_27000 PF12706 Beta-lactamase superfamily domain RYU24_27010 PF01545 Cation efflux family RYU24_27010 PF16916 Dimerisation domain of Zinc Transporter RYU24_27020 PF00958 GMP synthase C terminal domain RYU24_27020 PF00117 Glutamine amidotransferase class-I RYU24_27020 PF13302 Acetyltransferase (GNAT) domain RYU24_27020 PF13673 Acetyltransferase (GNAT) domain RYU24_27020 PF03352 Methyladenine glycosylase RYU24_27040 PF07992 Pyridine nucleotide-disulphide oxidoreductase RYU24_27040 PF14759 Reductase C-terminal RYU24_27050 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RYU24_27060 PF00106 short chain dehydrogenase RYU24_27070 PF00355 Rieske [2Fe-2S] domain RYU24_27080 PF00866 Ring hydroxylating beta subunit RYU24_27090 PF00355 Rieske [2Fe-2S] domain RYU24_27090 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RYU24_27100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RYU24_27100 PF03466 LysR substrate binding domain RYU24_27110 PF00561 alpha/beta hydrolase fold RYU24_27120 PF03573 outer membrane porin, OprD family RYU24_27140 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_27140 PF13359 DDE superfamily endonuclease RYU24_27150 PF07836 DmpG-like communication domain RYU24_27150 PF00682 HMGL-like RYU24_27160 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation RYU24_27160 PF01118 Semialdehyde dehydrogenase, NAD binding domain RYU24_27170 PF01557 Fumarylacetoacetate (FAA) hydrolase family RYU24_27180 PF13419 Haloacid dehalogenase-like hydrolase RYU24_27190 PF01479 S4 domain RYU24_27190 PF00849 RNA pseudouridylate synthase RYU24_27200 PF10150 Ribonuclease E/G family RYU24_27200 PF00575 S1 RNA binding domain RYU24_27200 PF12111 Polyribonucleotide phosphorylase C terminal RYU24_27210 PF00501 AMP-binding enzyme RYU24_27210 PF13193 AMP-binding enzyme C-terminal domain RYU24_27230 PF04024 PspC domain RYU24_27250 PF00939 Sodium:sulfate symporter transmembrane region RYU24_27260 PF01743 Poly A polymerase head domain RYU24_27260 PF00571 CBS domain RYU24_27280 PF02091 Glycyl-tRNA synthetase alpha subunit RYU24_27290 PF05746 DALR anticodon binding domain RYU24_27290 PF02092 Glycyl-tRNA synthetase beta subunit RYU24_27340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RYU24_27340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RYU24_27370 PF08241 Methyltransferase domain RYU24_27390 PF01494 FAD binding domain RYU24_27410 PF03884 DNA gyrase inhibitor YacG RYU24_27430 PF00753 Metallo-beta-lactamase superfamily RYU24_27440 PF00762 Ferrochelatase RYU24_27460 PF01177 Asp/Glu/Hydantoin racemase RYU24_27510 PF13296 Putative type VI secretion system Rhs element Vgr RYU24_27510 PF04717 Type VI secretion system, phage-baseplate injector RYU24_27510 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RYU24_27520 PF01206 Sulfurtransferase TusA RYU24_27530 PF00571 CBS domain RYU24_27530 PF03471 Transporter associated domain RYU24_27540 PF00795 Carbon-nitrogen hydrolase RYU24_27560 PF07963 Prokaryotic N-terminal methylation motif RYU24_27560 PF08334 Type II secretion system (T2SS), protein G RYU24_27570 PF00482 Type II secretion system (T2SS), protein F RYU24_27580 PF00270 DEAD/DEAH box helicase RYU24_27580 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RYU24_27580 PF18074 Primosomal protein N C-terminal domain RYU24_27580 PF17764 3′ DNA-binding domain (3′BD) RYU24_27580 PF00271 Helicase conserved C-terminal domain RYU24_27590 PF02254 TrkA-N domain RYU24_27590 PF00999 Sodium/hydrogen exchanger family RYU24_27600 PF01430 Hsp33 protein RYU24_27650 PF04325 Protein of unknown function (DUF465) RYU24_27660 PF03725 3' exoribonuclease family, domain 2 RYU24_27660 PF01138 3' exoribonuclease family, domain 1 RYU24_27660 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RYU24_27660 PF00013 KH domain RYU24_27660 PF00575 S1 RNA binding domain RYU24_27670 PF00312 Ribosomal protein S15 RYU24_27680 PF13538 UvrD-like helicase C-terminal domain RYU24_27690 PF12705 PD-(D/E)XK nuclease superfamily RYU24_27690 PF00580 UvrD/REP helicase N-terminal domain RYU24_27690 PF13361 UvrD-like helicase C-terminal domain RYU24_27700 PF17946 RecC C-terminal domain RYU24_27720 PF03976 Polyphosphate kinase 2 (PPK2) RYU24_27740 PF01209 ubiE/COQ5 methyltransferase family RYU24_27760 PF03109 ABC1 family RYU24_27810 PF17674 HHH domain RYU24_27810 PF00575 S1 RNA binding domain RYU24_27810 PF09371 Tex-like protein N-terminal domain RYU24_27810 PF16921 Tex protein YqgF-like domain RYU24_27820 PF00072 Response regulator receiver domain RYU24_27820 PF00486 Transcriptional regulatory protein, C terminal RYU24_27830 PF00672 HAMP domain RYU24_27830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_27830 PF00512 His Kinase A (phospho-acceptor) domain RYU24_27840 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RYU24_27840 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RYU24_27850 PF01323 DSBA-like thioredoxin domain RYU24_27920 PF00183 Hsp90 protein RYU24_27920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_27940 PF03922 OmpW family RYU24_27950 PF13726 Na+-H+ antiporter family RYU24_27950 PF03553 Na+/H+ antiporter family RYU24_27990 PF04997 RNA polymerase Rpb1, domain 1 RYU24_27990 PF00623 RNA polymerase Rpb1, domain 2 RYU24_27990 PF04983 RNA polymerase Rpb1, domain 3 RYU24_27990 PF05000 RNA polymerase Rpb1, domain 4 RYU24_27990 PF04998 RNA polymerase Rpb1, domain 5 RYU24_28000 PF04563 RNA polymerase beta subunit RYU24_28000 PF04561 RNA polymerase Rpb2, domain 2 RYU24_28000 PF04565 RNA polymerase Rpb2, domain 3 RYU24_28000 PF10385 RNA polymerase beta subunit external 1 domain RYU24_28000 PF00562 RNA polymerase Rpb2, domain 6 RYU24_28000 PF04560 RNA polymerase Rpb2, domain 7 RYU24_28020 PF00542 Ribosomal protein L7/L12 C-terminal domain RYU24_28020 PF16320 Ribosomal protein L7/L12 dimerisation domain RYU24_28030 PF00466 Ribosomal protein L10 RYU24_28040 PF00687 Ribosomal protein L1p/L10e family RYU24_28050 PF00298 Ribosomal protein L11, RNA binding domain RYU24_28050 PF03946 Ribosomal protein L11, N-terminal domain RYU24_28060 PF00467 KOW motif RYU24_28060 PF02357 Transcription termination factor nusG RYU24_28070 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RYU24_28080 PF03143 Elongation factor Tu C-terminal domain RYU24_28080 PF03144 Elongation factor Tu domain 2 RYU24_28080 PF00009 Elongation factor Tu GTP binding domain RYU24_28090 PF04715 Anthranilate synthase component I, N terminal region RYU24_28090 PF00425 chorismate binding enzyme RYU24_28100 PF13419 Haloacid dehalogenase-like hydrolase RYU24_28110 PF16697 Inner membrane component of T3SS, cytoplasmic domain RYU24_28120 PF00263 Bacterial type II and III secretion system protein RYU24_28120 PF03958 Bacterial type II/III secretion system short domain RYU24_28150 PF00816 H-NS histone family RYU24_28160 PF03061 Thioesterase superfamily RYU24_28200 PF03900 Porphobilinogen deaminase, C-terminal domain RYU24_28200 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RYU24_28210 PF00072 Response regulator receiver domain RYU24_28210 PF04397 LytTr DNA-binding domain RYU24_28220 PF07694 5TMR of 5TMR-LYT RYU24_28220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_28220 PF06580 Histidine kinase RYU24_28230 PF14698 Argininosuccinate lyase C-terminal RYU24_28230 PF00206 Lyase RYU24_28240 PF04362 Bacterial Fe(2+) trafficking RYU24_28250 PF01066 CDP-alcohol phosphatidyltransferase RYU24_28270 PF01541 GIY-YIG catalytic domain RYU24_28270 PF08459 UvrC Helix-hairpin-helix N-terminal RYU24_28270 PF02151 UvrB/uvrC motif RYU24_28280 PF07724 AAA domain (Cdc48 subfamily) RYU24_28280 PF10431 C-terminal, D2-small domain, of ClpB protein RYU24_28310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RYU24_28310 PF00378 Enoyl-CoA hydratase/isomerase RYU24_28310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RYU24_28320 PF00108 Thiolase, N-terminal domain RYU24_28320 PF02803 Thiolase, C-terminal domain RYU24_28350 PF03848 Tellurite resistance protein TehB RYU24_28350 PF09313 Domain of unknown function (DUF1971) RYU24_28400 PF00475 Imidazoleglycerol-phosphate dehydratase RYU24_28410 PF00117 Glutamine amidotransferase class-I RYU24_28430 PF00977 Histidine biosynthesis protein RYU24_28470 PF01636 Phosphotransferase enzyme family RYU24_28480 PF00977 Histidine biosynthesis protein RYU24_28550 PF02705 K+ potassium transporter RYU24_28600 PF02678 Pirin RYU24_28600 PF05726 Pirin C-terminal cupin domain RYU24_28610 PF10417 C-terminal domain of 1-Cys peroxiredoxin RYU24_28610 PF00578 AhpC/TSA family RYU24_28640 PF00436 Single-strand binding protein family RYU24_28650 PF07690 Major Facilitator Superfamily RYU24_28680 PF02581 Thiamine monophosphate synthase RYU24_28680 PF03070 TENA/THI-4/PQQC family RYU24_28680 PF08543 Phosphomethylpyrimidine kinase RYU24_28690 PF17760 UvrA interaction domain RYU24_28690 PF17755 UvrA DNA-binding domain RYU24_28710 PF00990 Diguanylate cyclase, GGDEF domain RYU24_28730 PF02028 BCCT, betaine/carnitine/choline family transporter RYU24_28750 PF00474 Sodium:solute symporter family RYU24_28760 PF04341 Protein of unknown function, DUF485 RYU24_28770 PF01627 Hpt domain RYU24_28770 PF00512 His Kinase A (phospho-acceptor) domain RYU24_28770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_28770 PF00672 HAMP domain RYU24_28770 PF00072 Response regulator receiver domain RYU24_28790 PF00196 Bacterial regulatory proteins, luxR family RYU24_28790 PF00072 Response regulator receiver domain RYU24_28800 PF03358 NADPH-dependent FMN reductase RYU24_28810 PF00296 Luciferase-like monooxygenase RYU24_28820 PF00677 Lumazine binding domain RYU24_28830 PF00875 DNA photolyase RYU24_28830 PF03441 FAD binding domain of DNA photolyase RYU24_28840 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RYU24_28840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RYU24_28850 PF16177 Acetyl-coenzyme A synthetase N-terminus RYU24_28850 PF00501 AMP-binding enzyme RYU24_28850 PF13193 AMP-binding enzyme C-terminal domain RYU24_28870 PF00924 Mechanosensitive ion channel RYU24_28870 PF05552 Conserved TM helix RYU24_28880 PF04452 RNA methyltransferase RYU24_28890 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RYU24_28900 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RYU24_28920 PF03462 PCRF domain RYU24_28920 PF00472 RF-1 domain RYU24_28950 PF17768 RecJ OB domain RYU24_28950 PF02272 DHHA1 domain RYU24_28950 PF01368 DHH family RYU24_28960 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RYU24_28960 PF01243 Pyridoxamine 5'-phosphate oxidase RYU24_28970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RYU24_28970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RYU24_28970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RYU24_28970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RYU24_28980 PF00478 IMP dehydrogenase / GMP reductase domain RYU24_28980 PF00571 CBS domain RYU24_28990 PF03692 Putative zinc- or iron-chelating domain RYU24_29000 PF00258 Flavodoxin RYU24_29000 PF01613 Flavin reductase like domain RYU24_29010 PF01169 Uncharacterized protein family UPF0016 RYU24_29020 PF02817 e3 binding domain RYU24_29020 PF00364 Biotin-requiring enzyme RYU24_29020 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RYU24_29030 PF17831 Pyruvate dehydrogenase E1 component middle domain RYU24_29030 PF00456 Transketolase, thiamine diphosphate binding domain RYU24_29060 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RYU24_29070 PF12327 FtsZ family, C-terminal domain RYU24_29070 PF00091 Tubulin/FtsZ family, GTPase domain RYU24_29080 PF02491 SHS2 domain inserted in FTSA RYU24_29090 PF08478 POTRA domain, FtsQ-type RYU24_29090 PF03799 Cell division protein FtsQ RYU24_29100 PF07478 D-ala D-ala ligase C-terminus RYU24_29100 PF01820 D-ala D-ala ligase N-terminus RYU24_29110 PF02875 Mur ligase family, glutamate ligase domain RYU24_29110 PF01225 Mur ligase family, catalytic domain RYU24_29110 PF08245 Mur ligase middle domain RYU24_29120 PF03033 Glycosyltransferase family 28 N-terminal domain RYU24_29120 PF04101 Glycosyltransferase family 28 C-terminal domain RYU24_29140 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RYU24_29140 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RYU24_29170 PF00156 Phosphoribosyl transferase domain RYU24_29180 PF03372 Endonuclease/Exonuclease/phosphatase family RYU24_29210 PF07859 alpha/beta hydrolase fold RYU24_29220 PF02525 Flavodoxin-like fold RYU24_29240 PF07694 5TMR of 5TMR-LYT RYU24_29240 PF00990 Diguanylate cyclase, GGDEF domain RYU24_29250 PF02683 Cytochrome C biogenesis protein transmembrane region RYU24_29250 PF11412 Disulphide bond corrector protein DsbC RYU24_29290 PF13613 Helix-turn-helix of DDE superfamily endonuclease RYU24_29290 PF13359 DDE superfamily endonuclease RYU24_29340 PF00204 DNA gyrase B RYU24_29340 PF00986 DNA gyrase B subunit, carboxyl terminus RYU24_29340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RYU24_29340 PF01751 Toprim domain RYU24_29350 PF05728 Uncharacterised protein family (UPF0227) RYU24_29370 PF02600 Disulfide bond formation protein DsbB RYU24_29380 PF04262 Glutamate-cysteine ligase RYU24_29410 PF04286 Protein of unknown function (DUF445) RYU24_29430 PF00750 tRNA synthetases class I (R) RYU24_29430 PF03485 Arginyl tRNA synthetase N terminal domain RYU24_29430 PF05746 DALR anticodon binding domain RYU24_29450 PF02666 Phosphatidylserine decarboxylase RYU24_29460 PF00581 Rhodanese-like domain RYU24_29470 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RYU24_29470 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RYU24_29490 PF06628 Catalase-related immune-responsive RYU24_29490 PF00199 Catalase RYU24_29500 PF02580 D-Tyr-tRNA(Tyr) deacylase RYU24_29550 PF13089 Polyphosphate kinase N-terminal domain RYU24_29550 PF02503 Polyphosphate kinase middle domain RYU24_29550 PF13090 Polyphosphate kinase C-terminal domain 2 RYU24_29550 PF17941 Polyphosphate kinase C-terminal domain 1 RYU24_29560 PF01758 Sodium Bile acid symporter family RYU24_29570 PF00857 Isochorismatase family RYU24_29580 PF07690 Major Facilitator Superfamily RYU24_29590 PF07690 Major Facilitator Superfamily RYU24_29600 PF07690 Major Facilitator Superfamily RYU24_29610 PF00701 Dihydrodipicolinate synthetase family RYU24_29630 PF01259 SAICAR synthetase RYU24_29640 PF00004 ATPase family associated with various cellular activities (AAA) RYU24_29640 PF16193 AAA C-terminal domain RYU24_29640 PF12002 MgsA AAA+ ATPase C terminal RYU24_29650 PF00563 EAL domain RYU24_29650 PF00990 Diguanylate cyclase, GGDEF domain RYU24_29650 PF03707 Bacterial signalling protein N terminal repeat RYU24_29650 PF13188 PAS domain RYU24_29660 PF03692 Putative zinc- or iron-chelating domain RYU24_29670 PF07043 Protein of unknown function (DUF1328) RYU24_29680 PF03023 Lipid II flippase MurJ RYU24_29690 PF01510 N-acetylmuramoyl-L-alanine amidase RYU24_29700 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RYU24_29700 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RYU24_29720 PF01138 3' exoribonuclease family, domain 1 RYU24_29720 PF03725 3' exoribonuclease family, domain 2 RYU24_29730 PF00440 Bacterial regulatory proteins, tetR family RYU24_29740 PF01323 DSBA-like thioredoxin domain RYU24_29760 PF13419 Haloacid dehalogenase-like hydrolase RYU24_29770 PF00106 short chain dehydrogenase RYU24_29820 PF00696 Amino acid kinase family RYU24_29820 PF00583 Acetyltransferase (GNAT) family RYU24_29830 PF09084 NMT1/THI5 like RYU24_29840 PF09084 NMT1/THI5 like RYU24_29850 PF00296 Luciferase-like monooxygenase RYU24_29860 PF00528 Binding-protein-dependent transport system inner membrane component RYU24_29870 PF00005 ABC transporter RYU24_29880 PF08362 YcdC-like protein, C-terminal region RYU24_29880 PF00440 Bacterial regulatory proteins, tetR family RYU24_29900 PF06574 FAD synthetase RYU24_29900 PF01687 Riboflavin kinase RYU24_29910 PF00133 tRNA synthetases class I (I, L, M and V) RYU24_29910 PF08264 Anticodon-binding domain of tRNA RYU24_29910 PF06827 Zinc finger found in FPG and IleRS RYU24_29920 PF01252 Signal peptidase (SPase) II RYU24_29930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RYU24_29960 PF07995 Glucose / Sorbosone dehydrogenase RYU24_29970 PF00563 EAL domain RYU24_29970 PF01590 GAF domain RYU24_29970 PF00990 Diguanylate cyclase, GGDEF domain RYU24_29970 PF00360 Phytochrome region RYU24_30000 PF00579 tRNA synthetases class I (W and Y) RYU24_30010 PF03702 Anhydro-N-acetylmuramic acid kinase RYU24_30020 PF13406 Transglycosylase SLT domain RYU24_30030 PF02222 ATP-grasp domain RYU24_30030 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RYU24_30040 PF00731 AIR carboxylase RYU24_30060 PF08245 Mur ligase middle domain RYU24_30060 PF02875 Mur ligase family, glutamate ligase domain RYU24_30060 PF01225 Mur ligase family, catalytic domain RYU24_30070 PF08240 Alcohol dehydrogenase GroES-like domain RYU24_30070 PF13823 Alcohol dehydrogenase GroES-associated RYU24_30070 PF00107 Zinc-binding dehydrogenase RYU24_30080 PF08240 Alcohol dehydrogenase GroES-like domain RYU24_30080 PF13823 Alcohol dehydrogenase GroES-associated RYU24_30080 PF00107 Zinc-binding dehydrogenase RYU24_30120 PF07690 Major Facilitator Superfamily RYU24_30130 PF03741 Integral membrane protein TerC family RYU24_30140 PF01979 Amidohydrolase family RYU24_30150 PF00156 Phosphoribosyl transferase domain RYU24_30170 PF13098 Thioredoxin-like domain RYU24_30170 PF10411 Disulfide bond isomerase protein N-terminus RYU24_30180 PF01545 Cation efflux family RYU24_30190 PF02583 Metal-sensitive transcriptional repressor RYU24_30200 PF07690 Major Facilitator Superfamily RYU24_30210 PF01926 50S ribosome-binding GTPase RYU24_30210 PF12631 MnmE helical domain RYU24_30210 PF10396 GTP-binding protein TrmE N-terminus RYU24_30220 PF02096 60Kd inner membrane protein RYU24_30220 PF14849 YidC periplasmic domain RYU24_30230 PF01809 Putative membrane protein insertion efficiency factor RYU24_30240 PF00825 Ribonuclease P RYU24_30250 PF00468 Ribosomal protein L34