locus-tag	class	description
BEN71_00015	COG1192	Involved in chromosome partitioning
BEN71_00115	COG3421	Type III restriction
BEN71_00140	COG3451	type IV secretory pathway VirB4
BEN71_00150	COG0739	heme binding
BEN71_00150	COG0741	lytic transglycosylase activity
BEN71_00150	COG1196	nuclear chromosome segregation
BEN71_00165	COG1196	nuclear chromosome segregation
BEN71_00165	COG0741	lytic transglycosylase activity
BEN71_00165	COG0739	heme binding
BEN71_00245	COG2165	general secretion pathway protein
BEN71_00320	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BEN71_00355	COG3173	Aminoglycoside phosphotransferase
BEN71_00410	COG3077	Addiction module antitoxin, RelB DinJ family
BEN71_00430	COG4683	PFAM Phage derived protein Gp49-like (DUF891)
BEN71_00490	COG4115	mRNA cleavage
BEN71_00505	COG4319	ketosteroid isomerase
BEN71_00540	COG2076	Multidrug Resistance protein
BEN71_00690	COG0592	DNA-directed DNA polymerase activity
BEN71_00700	COG0187	DNA topoisomerase II activity
BEN71_00710	COG0488	(ABC) transporter
BEN71_00725	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BEN71_00730	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BEN71_00765	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BEN71_00795	COG2814	Major facilitator Superfamily
BEN71_00810	COG1012	belongs to the aldehyde dehydrogenase family
BEN71_00815	COG3738	Protein conserved in bacteria
BEN71_00820	COG0733	neurotransmitter:sodium symporter activity
BEN71_00880	COG0583	DNA-binding transcription factor activity
BEN71_00885	COG3077	Addiction module antitoxin, RelB DinJ family
BEN71_00890	COG1047	Peptidyl-prolyl cis-trans
BEN71_00895	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BEN71_00900	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BEN71_00905	COG0196	riboflavin kinase activity
BEN71_00915	COG2233	PERMEase
BEN71_00920	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BEN71_00930	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN71_00970	COG2814	Major facilitator Superfamily
BEN71_00980	COG0583	DNA-binding transcription factor activity
BEN71_00990	COG0156	8-amino-7-oxononanoate synthase activity
BEN71_00995	COG1064	alcohol dehydrogenase
BEN71_01000	COG2818	Glycosylase
BEN71_01010	COG0739	heme binding
BEN71_01015	COG1194	a g-specific adenine glycosylase
BEN71_01030	COG5487	UPF0391 membrane protein
BEN71_01035	COG5487	UPF0391 membrane protein
BEN71_01040	COG2983	Belongs to the UPF0260 family
BEN71_01045	COG2819	hydrolase of the alpha beta superfamily
BEN71_01050	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BEN71_01055	COG0584	glycerophosphoryl diester phosphodiesterase
BEN71_01060	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BEN71_01070	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BEN71_01075	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BEN71_01085	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BEN71_01100	COG0560	Phosphoserine phosphatase
BEN71_01100	COG3830	Belongs to the UPF0237 family
BEN71_01170	COG0534	Mate efflux family protein
BEN71_01175	COG0436	Aminotransferase
BEN71_01180	COG2801	Transposase and inactivated derivatives
BEN71_01200	COG2733	membrane
BEN71_01210	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
BEN71_01225	COG2918	glutathione biosynthetic process
BEN71_01245	COG3150	esterase
BEN71_01290	COG3706	GGDEF domain
BEN71_01310	COG1393	Belongs to the ArsC family
BEN71_01315	COG0708	Exodeoxyribonuclease III
BEN71_01340	COG0189	ligase activity
BEN71_01350	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BEN71_01360	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BEN71_01375	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BEN71_01400	COG2119	membrane
BEN71_01405	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BEN71_01405	COG0426	domain, Protein
BEN71_01430	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BEN71_01460	COG3670	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
BEN71_01480	COG0625	glutathione transferase activity
BEN71_01485	COG2267	carboxylic ester hydrolase activity
BEN71_01495	COG0697	spore germination
BEN71_01500	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BEN71_01540	COG0351	phosphomethylpyrimidine kinase
BEN71_01540	COG0352	thiamine-phosphate diphosphorylase activity
BEN71_01540	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BEN71_01550	COG2814	Major facilitator Superfamily
BEN71_01555	COG0629	single-stranded DNA binding
BEN71_01575	COG0450	alkyl hydroperoxide reductase
BEN71_01585	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
BEN71_01620	COG3158	transport of potassium into the cell
BEN71_01635	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BEN71_01660	COG3275	phosphorelay sensor kinase activity
BEN71_01670	COG0181	hydroxymethylbilane synthase activity
BEN71_01760	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BEN71_01775	COG0081	regulation of translation
BEN71_01780	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BEN71_01790	COG0085	RNA polymerase activity
BEN71_01820	COG2056	Na+-H+ antiporter family
BEN71_01840	COG0326	Molecular chaperone. Has ATPase activity
BEN71_01860	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
BEN71_01885	COG0183	Belongs to the thiolase family
BEN71_01890	COG1250	3-hydroxyacyl-CoA dehydrogenase
BEN71_01890	COG1024	Enoyl-CoA hydratase
BEN71_01920	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BEN71_01950	COG0795	lipopolysaccharide-transporting ATPase activity
BEN71_01955	COG0795	lipopolysaccharide-transporting ATPase activity
BEN71_01960	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BEN71_01965	COG0793	Belongs to the peptidase S41A family
BEN71_01975	COG5002	protein histidine kinase activity
BEN71_01980	COG2197	response regulator
BEN71_01985	COG1686	Belongs to the peptidase S11 family
BEN71_01990	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BEN71_02000	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BEN71_02005	COG4974	Belongs to the 'phage' integrase family
BEN71_02025	COG1132	(ABC) transporter
BEN71_02040	COG2249	NAD(P)H dehydrogenase (quinone) activity
BEN71_02050	COG1289	transmembrane transporter activity
BEN71_02070	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BEN71_02075	COG1678	Uncharacterized ACR, COG1678
BEN71_02100	COG0497	DNA recombination
BEN71_02110	COG3123	guanosine phosphorylase activity
BEN71_02115	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BEN71_02125	COG0237	dephospho-CoA kinase activity
BEN71_02130	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
BEN71_02175	COG0779	Required for maturation of 30S ribosomal subunits
BEN71_02180	COG0195	Participates in both transcription termination and antitermination
BEN71_02190	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BEN71_02200	COG1704	LemA family
BEN71_02205	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BEN71_02230	COG1132	(ABC) transporter
BEN71_02240	COG1215	transferase activity, transferring glycosyl groups
BEN71_02245	COG1215	transferase activity, transferring glycosyl groups
BEN71_02250	COG1216	Glycosyl transferase, family 2
BEN71_02265	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BEN71_02270	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
BEN71_02280	COG3307	-O-antigen
BEN71_02300	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BEN71_02305	COG1758	RNA polymerase activity
BEN71_02310	COG0194	GDP metabolic process
BEN71_02315	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BEN71_02355	COG0228	four-way junction DNA binding
BEN71_02360	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BEN71_02370	COG0335	large ribosomal subunit rRNA binding
BEN71_02385	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BEN71_02390	COG5380	lipid catabolic process
BEN71_02395	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BEN71_02405	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN71_02420	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BEN71_02450	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BEN71_02455	COG1074	ATP-dependent DNA helicase activity
BEN71_02460	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BEN71_02485	COG0598	Magnesium transport protein CorA
BEN71_02495	COG0789	Transcriptional regulator
BEN71_02500	COG0484	heat shock protein binding
BEN71_02510	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BEN71_02520	COG2226	methyltransferase
BEN71_02565	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BEN71_02600	COG0751	glycine-tRNA ligase activity
BEN71_02620	COG0471	metal ion transport
BEN71_02630	COG0517	IMP dehydrogenase activity
BEN71_02635	COG1983	PspC domain protein
BEN71_02660	COG0318	PFAM AMP-dependent synthetase and ligase
BEN71_02665	COG1530	ribonuclease E activity
BEN71_02670	COG0564	pseudouridine synthase activity
BEN71_02675	COG0546	phosphoglycolate phosphatase activity
BEN71_02680	COG3971	2-oxopent-4-enoate hydratase activity
BEN71_02685	COG4569	acetaldehyde dehydrogenase (acetylating) activity
BEN71_02700	COG1473	amidohydrolase
BEN71_02720	COG2161	toxin-antitoxin pair type II binding
BEN71_02730	COG0583	DNA-binding transcription factor activity
BEN71_02735	COG4638	Rieske (2fe-2S)
BEN71_02755	COG3384	dioxygenase
BEN71_02760	COG0446	pyridine nucleotide-disulphide oxidoreductase
BEN71_02765	COG0456	acetyltransferase
BEN71_02795	COG3011	Protein conserved in bacteria
BEN71_02800	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BEN71_02820	COG1960	acyl-CoA dehydrogenase activity
BEN71_02845	COG0494	nUDIX hydrolase
BEN71_02860	COG0583	DNA-binding transcription factor activity
BEN71_02880	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
BEN71_02895	COG0473	3-isopropylmalate dehydrogenase activity
BEN71_02910	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BEN71_02920	COG0101	tRNA pseudouridine synthase activity
BEN71_02925	COG0252	asparaginase activity
BEN71_02970	COG1560	Kdo2-lipid A biosynthetic process
BEN71_03030	COG1929	Belongs to the glycerate kinase type-1 family
BEN71_03040	COG0210	DNA helicase
BEN71_03085	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BEN71_03085	COG4651	solute:proton antiporter activity
BEN71_03090	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BEN71_03095	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BEN71_03110	COG0788	formyltetrahydrofolate deformylase activity
BEN71_03135	COG3453	Protein conserved in bacteria
BEN71_03135	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BEN71_03150	COG1607	acyl-coa hydrolase
BEN71_03185	COG2350	Protein conserved in bacteria
BEN71_03195	COG0613	PHP domain protein
BEN71_03205	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BEN71_03210	COG1702	phosphate starvation-inducible protein PhoH
BEN71_03215	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BEN71_03220	COG0741	lytic transglycosylase activity
BEN71_03220	COG1196	nuclear chromosome segregation
BEN71_03220	COG0739	heme binding
BEN71_03255	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BEN71_03260	COG1183	phosphatidylcholine synthase activity
BEN71_03325	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
BEN71_03330	COG3878	Protein conserved in bacteria
BEN71_03385	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BEN71_03400	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BEN71_03405	COG1063	alcohol dehydrogenase
BEN71_03415	COG2813	Specifically methylates the guanine in position
BEN71_03415	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BEN71_03420	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BEN71_03425	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BEN71_03435	COG3128	pkhd-type hydroxylase
BEN71_03440	COG4774	siderophore transport
BEN71_03445	COG4774	siderophore transport
BEN71_03450	COG4771	TonB-dependent receptor
BEN71_03460	COG0740	serine-type endopeptidase activity
BEN71_03515	COG0857	belongs to the CobB CobQ family
BEN71_03515	COG0280	phosphate acetyltransferase
BEN71_03520	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BEN71_03555	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
BEN71_03565	COG0726	polysaccharide deacetylase
BEN71_03570	COG0084	hydrolase, TatD family'
BEN71_03575	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BEN71_03585	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
BEN71_03620	COG2814	Major facilitator Superfamily
BEN71_03630	COG0789	Transcriptional regulator
BEN71_03645	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BEN71_03650	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BEN71_03655	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BEN71_03675	COG1862	Preprotein translocase
BEN71_03710	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BEN71_03805	COG0419	ATPase involved in DNA repair
BEN71_03855	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
BEN71_03880	COG0438	transferase activity, transferring glycosyl groups
BEN71_03915	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
BEN71_03945	COG3223	Belongs to the PsiE family
BEN71_03955	COG1960	acyl-CoA dehydrogenase activity
BEN71_03960	COG1960	acyl-CoA dehydrogenase activity
BEN71_03965	COG0318	PFAM AMP-dependent synthetase and ligase
BEN71_04000	COG0625	glutathione transferase activity
BEN71_04010	COG1238	metal cluster binding
BEN71_04030	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BEN71_04035	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
BEN71_04070	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BEN71_04075	COG0072	phenylalanine-tRNA ligase activity
BEN71_04080	COG0776	regulation of translation
BEN71_04110	COG0037	tRNA processing
BEN71_04140	COG0183	Belongs to the thiolase family
BEN71_04150	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BEN71_04150	COG2885	chlorophyll binding
BEN71_04155	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
BEN71_04155	COG2885	chlorophyll binding
BEN71_04165	COG1690	Belongs to the RtcB family
BEN71_04170	COG0833	amino acid
BEN71_04180	COG2233	PERMEase
BEN71_04195	COG1970	mechanosensitive ion channel activity
BEN71_04210	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BEN71_04220	COG3659	wide pore channel activity
BEN71_04225	COG4772	TonB-dependent receptor
BEN71_04230	COG1902	pentaerythritol trinitrate reductase activity
BEN71_04245	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BEN71_04255	COG0009	L-threonylcarbamoyladenylate synthase
BEN71_04260	COG3101	peptidyl-lysine hydroxylation
BEN71_04265	COG1399	metal-binding, possibly nucleic acid-binding protein
BEN71_04280	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_04285	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BEN71_04290	COG1652	LysM domain
BEN71_04295	COG0450	alkyl hydroperoxide reductase
BEN71_04310	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
BEN71_04315	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
BEN71_04345	COG2199	diguanylate cyclase activity
BEN71_04400	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BEN71_04415	COG0745	RESPONSE REGULATOR receiver
BEN71_04420	COG2205	protein histidine kinase activity
BEN71_04430	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BEN71_04450	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
BEN71_04460	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
BEN71_04465	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BEN71_04475	COG0713	ATP synthesis coupled electron transport
BEN71_04480	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BEN71_04485	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
BEN71_04515	COG0583	DNA-binding transcription factor activity
BEN71_04535	COG0668	transmembrane transport
BEN71_04540	COG2081	HI0933 family
BEN71_04580	COG4716	Myosin-crossreactive antigen
BEN71_04595	COG1126	abc transporter atp-binding protein
BEN71_04600	COG0765	amino acid transport
BEN71_04605	COG0765	amino acid transport
BEN71_04610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN71_04635	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BEN71_04640	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BEN71_04650	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BEN71_04690	COG0494	nUDIX hydrolase
BEN71_04695	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BEN71_04700	COG1214	PFAM Peptidase M22, glycoprotease
BEN71_04705	COG1968	undecaprenyl-diphosphatase activity
BEN71_04725	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BEN71_04760	COG4269	membrane
BEN71_04775	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BEN71_04785	COG2132	Multicopper oxidase
BEN71_04800	COG2076	Multidrug Resistance protein
BEN71_04805	COG2076	Multidrug Resistance protein
BEN71_04810	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BEN71_04825	COG0352	thiamine-phosphate diphosphorylase activity
BEN71_04825	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
BEN71_04825	COG0351	phosphomethylpyrimidine kinase
BEN71_04860	COG0251	oxidation-reduction process
BEN71_04865	COG1113	amino acid transport
BEN71_04900	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BEN71_04930	COG0456	acetyltransferase
BEN71_04940	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
BEN71_04945	COG0500	methyltransferase
BEN71_04950	COG0492	ferredoxin-NADP+ reductase activity
BEN71_04955	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BEN71_04955	COG1674	ftsk spoiiie
BEN71_04965	COG0204	Acyl-transferase
BEN71_04980	COG2268	Band 7 protein
BEN71_04985	COG1585	Membrane protein implicated in regulation of membrane protease activity
BEN71_04995	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BEN71_05010	COG4771	TonB-dependent receptor
BEN71_05040	COG1113	amino acid transport
BEN71_05045	COG2828	Protein conserved in bacteria
BEN71_05055	COG0142	geranyltranstransferase activity
BEN71_05060	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BEN71_05075	COG1752	Esterase of the alpha-beta hydrolase superfamily
BEN71_05090	COG2194	sulfuric ester hydrolase activity
BEN71_05095	COG0745	RESPONSE REGULATOR receiver
BEN71_05100	COG0642	Histidine kinase
BEN71_05110	COG0004	ammonium transporteR
BEN71_05125	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BEN71_05135	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
BEN71_05140	COG1077	Cell shape determining protein MreB Mrl
BEN71_05145	COG1792	Involved in formation and maintenance of cell shape
BEN71_05150	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BEN71_05155	COG0424	maF-like protein
BEN71_05160	COG1530	ribonuclease E activity
BEN71_05165	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
BEN71_05175	COG0560	Phosphoserine phosphatase
BEN71_05185	COG4181	ATPase activity
BEN71_05190	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BEN71_05195	COG0586	Pfam SNARE associated Golgi protein
BEN71_05210	COG1309	transcriptional regulator
BEN71_05220	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BEN71_05240	COG0193	aminoacyl-tRNA hydrolase activity
BEN71_05250	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BEN71_05280	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
BEN71_05290	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
BEN71_05300	COG0358	DNA primase activity
BEN71_05310	COG0564	pseudouridine synthase activity
BEN71_05345	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BEN71_05355	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BEN71_05435	COG0477	Major facilitator Superfamily
BEN71_05455	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
BEN71_05475	COG0459	protein refolding
BEN71_05480	COG2169	Transcriptional regulator
BEN71_05485	COG2223	nitrite transmembrane transporter activity
BEN71_05500	COG1840	ABC-type Fe3 transport system, periplasmic component
BEN71_05505	COG3842	ATPase activity
BEN71_05520	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BEN71_05525	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BEN71_05540	COG0584	glycerophosphoryl diester phosphodiesterase
BEN71_05545	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN71_05550	COG2239	Acts as a magnesium transporter
BEN71_05590	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BEN71_05595	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BEN71_05600	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BEN71_05615	COG1115	amino acid carrier protein
BEN71_05620	COG1113	amino acid transport
BEN71_05630	COG0019	diaminopimelate decarboxylase activity
BEN71_05635	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BEN71_05655	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BEN71_05675	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
BEN71_05690	COG0833	amino acid
BEN71_05705	COG0833	amino acid
BEN71_05715	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BEN71_05720	COG0418	dihydroorotase activity
BEN71_05735	COG0501	Belongs to the peptidase M48B family
BEN71_05740	COG0741	lytic transglycosylase activity
BEN71_05745	COG0037	tRNA processing
BEN71_05755	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
BEN71_05760	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BEN71_05815	COG2184	nucleotidyltransferase activity
BEN71_05830	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
BEN71_05905	COG1785	Belongs to the alkaline phosphatase family
BEN71_05910	COG1785	Belongs to the alkaline phosphatase family
BEN71_05925	COG3706	GGDEF domain
BEN71_05925	COG0745	RESPONSE REGULATOR receiver
BEN71_05980	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BEN71_05985	COG0183	Belongs to the thiolase family
BEN71_05990	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BEN71_05995	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
BEN71_06000	COG4829	muconolactone delta-isomerase
BEN71_06005	COG4948	Mandelate Racemase Muconate Lactonizing
BEN71_06010	COG0583	DNA-binding transcription factor activity
BEN71_06015	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
BEN71_06020	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BEN71_06025	COG3485	protocatechuate 3,4-dioxygenase
BEN71_06030	COG3135	benzoate transporter
BEN71_06045	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_06055	COG0633	Ferredoxin
BEN71_06055	COG0543	2 iron, 2 sulfur cluster binding
BEN71_06060	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
BEN71_06065	COG4638	Rieske (2fe-2S)
BEN71_06070	COG0583	DNA-binding transcription factor activity
BEN71_06075	COG2814	Major facilitator Superfamily
BEN71_06080	COG2203	Gaf domain
BEN71_06080	COG4251	negative regulation of phosphorylation
BEN71_06080	COG5001	Diguanylate cyclase
BEN71_06080	COG3706	GGDEF domain
BEN71_06090	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BEN71_06095	COG2801	Transposase and inactivated derivatives
BEN71_06120	COG0281	malic enzyme
BEN71_06120	COG0280	phosphate acetyltransferase
BEN71_06130	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BEN71_06140	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
BEN71_06180	COG2050	protein possibly involved in aromatic compounds catabolism
BEN71_06200	COG1187	pseudouridine synthase activity
BEN71_06240	COG0583	DNA-binding transcription factor activity
BEN71_06245	COG0697	spore germination
BEN71_06255	COG2186	Transcriptional regulator
BEN71_06265	COG0277	FAD linked oxidase domain protein
BEN71_06280	COG1902	pentaerythritol trinitrate reductase activity
BEN71_06280	COG0446	pyridine nucleotide-disulphide oxidoreductase
BEN71_06295	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BEN71_06325	COG0583	DNA-binding transcription factor activity
BEN71_06330	COG2826	transposase and inactivated derivatives, IS30 family
BEN71_06340	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN71_06345	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_06380	COG0006	proline dipeptidase activity
BEN71_06390	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN71_06395	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN71_06445	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BEN71_06450	COG1388	LysM domain
BEN71_06450	COG0741	lytic transglycosylase activity
BEN71_06455	COG4166	transmembrane transport
BEN71_06460	COG4174	ABC transporter (Permease)
BEN71_06465	COG4239	(ABC) transporter, permease
BEN71_06470	COG4172	Belongs to the ABC transporter superfamily
BEN71_06495	COG0583	DNA-binding transcription factor activity
BEN71_06520	COG0024	Methionine aminopeptidase
BEN71_06525	COG0052	Belongs to the universal ribosomal protein uS2 family
BEN71_06580	COG2951	lytic endotransglycosylase activity
BEN71_06585	COG0772	Belongs to the SEDS family
BEN71_06600	COG0842	Transport permease protein
BEN71_06605	COG1131	(ABC) transporter
BEN71_06635	COG1301	dicarboxylic acid transport
BEN71_06640	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
BEN71_06650	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BEN71_06670	COG1116	anion transmembrane transporter activity
BEN71_06670	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BEN71_06675	COG0745	RESPONSE REGULATOR receiver
BEN71_06685	COG2223	nitrite transmembrane transporter activity
BEN71_06690	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BEN71_06690	COG2146	nitrite reductase [NAD(P)H] activity
BEN71_06695	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BEN71_06700	COG0243	molybdopterin cofactor binding
BEN71_06710	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
BEN71_06720	COG0314	molybdopterin synthase activity
BEN71_06725	COG0521	Mo-molybdopterin cofactor biosynthetic process
BEN71_06725	COG0315	cyclic pyranopterin monophosphate synthase activity
BEN71_06730	COG0303	'Molybdopterin
BEN71_06735	COG0725	ABC transporter, periplasmic molybdate-binding protein
BEN71_06740	COG4149	molybdate abc transporter
BEN71_06750	COG3712	iron ion homeostasis
BEN71_06775	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN71_06785	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN71_06810	COG2070	2-Nitropropane dioxygenase
BEN71_06985	COG4695	Portal protein
BEN71_07095	COG3772	lysozyme
BEN71_07140	COG0450	alkyl hydroperoxide reductase
BEN71_07155	COG1643	Atp-dependent helicase
BEN71_07195	COG0529	Catalyzes the synthesis of activated sulfate
BEN71_07205	COG2831	hemolysin activation secretion protein
BEN71_07215	COG2072	flavoprotein involved in K transport
BEN71_07220	COG4221	oxidoreductase activity
BEN71_07225	COG1280	lysine exporter protein (LysE YggA)
BEN71_07235	COG4591	ABC-type transport system involved in lipoprotein release permease component
BEN71_07240	COG1136	(ABC) transporter
BEN71_07245	COG2333	competence protein COMEC
BEN71_07245	COG0658	competence protein
BEN71_07270	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BEN71_07275	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BEN71_07280	COG0628	permease
BEN71_07320	COG3634	alkyl hydroperoxide reductase activity
BEN71_07335	COG0583	DNA-binding transcription factor activity
BEN71_07340	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BEN71_07350	COG0640	Transcriptional regulator
BEN71_07355	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BEN71_07360	COG0798	PFAM Bile acid sodium symporter
BEN71_07365	COG0431	NADPH-dependent FMN reductase
BEN71_07375	COG1720	tRNA m6t6A37 methyltransferase activity
BEN71_07415	COG0702	epimerase
BEN71_07420	COG1733	regulation of RNA biosynthetic process
BEN71_07440	COG2915	High frequency lysogenization protein hflD homolog
BEN71_07445	COG0482	sulfurtransferase activity
BEN71_07470	COG0616	signal peptide processing
BEN71_07475	COG1960	acyl-CoA dehydrogenase activity
BEN71_07480	COG0693	protein deglycase activity
BEN71_07490	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BEN71_07505	COG0430	RNA-3'-phosphate cyclase activity
BEN71_07530	COG1690	Belongs to the RtcB family
BEN71_07535	COG1234	tRNA 3'-trailer cleavage
BEN71_07540	COG4650	regulator
BEN71_07550	COG3022	response to hydroperoxide
BEN71_07560	COG0352	thiamine-phosphate diphosphorylase activity
BEN71_07640	COG1741	Belongs to the pirin family
BEN71_07655	COG3739	integral membrane protein
BEN71_07675	COG1960	acyl-CoA dehydrogenase activity
BEN71_07680	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_07730	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BEN71_07735	COG0512	Glutamine amidotransferase of anthranilate synthase
BEN71_07775	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BEN71_07795	COG0823	Involved in the tonB-independent uptake of proteins
BEN71_07820	COG0824	Thioesterase
BEN71_07835	COG0632	four-way junction helicase activity
BEN71_07860	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
BEN71_07860	COG0047	phosphoribosylformylglycinamidine synthase activity
BEN71_07870	COG1301	dicarboxylic acid transport
BEN71_07885	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN71_07905	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
BEN71_07915	COG1671	Belongs to the UPF0178 family
BEN71_07950	COG0583	DNA-binding transcription factor activity
BEN71_07965	COG1960	acyl-CoA dehydrogenase activity
BEN71_07970	COG0183	Belongs to the thiolase family
BEN71_07975	COG0427	acetyl-CoA hydrolase
BEN71_07985	COG0517	IMP dehydrogenase activity
BEN71_07985	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BEN71_07990	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BEN71_08000	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BEN71_08005	COG1137	ATPase activity
BEN71_08050	COG0573	inorganic phosphate transmembrane transporter activity
BEN71_08060	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BEN71_08065	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BEN71_08070	COG1686	Belongs to the peptidase S11 family
BEN71_08085	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
BEN71_08100	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BEN71_08105	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BEN71_08110	COG1067	ATP-dependent peptidase activity
BEN71_08115	COG2211	Major facilitator Superfamily
BEN71_08145	COG1509	lysine 2,3-aminomutase activity
BEN71_08150	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BEN71_08155	COG1966	Carbon starvation protein
BEN71_08160	COG2879	small protein
BEN71_08165	COG0714	Associated with various cellular activities
BEN71_08220	COG0583	DNA-binding transcription factor activity
BEN71_08225	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
BEN71_08245	COG2252	PERMEase
BEN71_08250	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
BEN71_08260	COG3038	cytochrome b561
BEN71_08270	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BEN71_08280	COG0527	aspartate kinase activity
BEN71_08310	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BEN71_08330	COG1522	sequence-specific DNA binding
BEN71_08345	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BEN71_08360	COG0667	Aldo Keto reductase
BEN71_08370	COG1765	OsmC-like protein
BEN71_08380	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BEN71_08385	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BEN71_08395	COG1045	serine acetyltransferase
BEN71_08400	COG0542	response to heat
BEN71_08405	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BEN71_08440	COG0540	Belongs to the ATCase OTCase family
BEN71_08475	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN71_08485	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BEN71_08500	COG3851	Histidine kinase
BEN71_08510	COG5295	Hep Hag repeat protein
BEN71_08515	COG0625	glutathione transferase activity
BEN71_08535	COG2363	Small membrane protein
BEN71_08550	COG1278	Cold shock
BEN71_08555	COG0513	Belongs to the DEAD box helicase family
BEN71_08565	COG0778	Nitroreductase
BEN71_08615	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BEN71_08620	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BEN71_08620	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BEN71_08650	COG1280	lysine exporter protein (LysE YggA)
BEN71_08670	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN71_08685	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BEN71_08705	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
BEN71_08720	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BEN71_08735	COG0012	GTP binding
BEN71_08745	COG2011	ABC-type metal ion transport system permease component
BEN71_08750	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BEN71_08755	COG1464	Belongs to the NlpA lipoprotein family
BEN71_08760	COG1464	Belongs to the NlpA lipoprotein family
BEN71_08810	COG0583	DNA-binding transcription factor activity
BEN71_08820	COG0590	tRNA wobble adenosine to inosine editing
BEN71_08825	COG2807	transmembrane transport
BEN71_08850	COG1113	amino acid transport
BEN71_08855	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BEN71_08865	COG0786	glutamate:sodium symporter activity
BEN71_08870	COG0583	DNA-binding transcription factor activity
BEN71_08880	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BEN71_08890	COG3220	belongs to the UPF0276 family
BEN71_08910	COG1253	flavin adenine dinucleotide binding
BEN71_08930	COG1114	Component of the transport system for branched-chain amino acids
BEN71_08935	COG0024	Methionine aminopeptidase
BEN71_08940	COG3135	benzoate transporter
BEN71_08950	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BEN71_08955	COG0583	DNA-binding transcription factor activity
BEN71_08970	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BEN71_09025	COG3790	cyd operon protein YbgE
BEN71_09030	COG4890	Cyd operon protein YbgT
BEN71_09035	COG1294	oxidase, subunit
BEN71_09050	COG1585	Membrane protein implicated in regulation of membrane protease activity
BEN71_09060	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BEN71_09090	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
BEN71_09095	COG2814	Major facilitator Superfamily
BEN71_09100	COG1846	Transcriptional regulator
BEN71_09105	COG1132	(ABC) transporter
BEN71_09110	COG1304	FMN binding
BEN71_09115	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BEN71_09155	COG3852	Histidine kinase
BEN71_09175	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BEN71_09180	COG0575	Belongs to the CDS family
BEN71_09195	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BEN71_09205	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BEN71_09215	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BEN71_09230	COG2137	regulation of response to DNA damage stimulus
BEN71_09235	COG0318	PFAM AMP-dependent synthetase and ligase
BEN71_09240	COG4221	oxidoreductase activity
BEN71_09245	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BEN71_09250	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BEN71_09255	COG1011	Hydrolase
BEN71_09275	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BEN71_09280	COG0730	response to heat
BEN71_09290	COG1477	protein flavinylation
BEN71_09300	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BEN71_09320	COG2199	diguanylate cyclase activity
BEN71_09330	COG0439	Biotin carboxylase
BEN71_09335	COG0511	ligase activity, forming carbon-carbon bonds
BEN71_09360	COG0583	DNA-binding transcription factor activity
BEN71_09365	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BEN71_09375	COG0583	DNA-binding transcription factor activity
BEN71_09380	COG1960	acyl-CoA dehydrogenase activity
BEN71_09385	COG2814	Major facilitator Superfamily
BEN71_09420	COG0372	Belongs to the citrate synthase family
BEN71_09430	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BEN71_09445	COG0069	glutamate synthase activity
BEN71_09455	COG2850	peptidyl-arginine hydroxylation
BEN71_09470	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BEN71_09500	COG0316	Belongs to the HesB IscA family
BEN71_09505	COG0822	iron-sulfur transferase activity
BEN71_09515	COG1959	2 iron, 2 sulfur cluster binding
BEN71_09530	COG0776	regulation of translation
BEN71_09535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BEN71_09540	COG2207	Transcriptional regulator
BEN71_09545	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BEN71_09610	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BEN71_09655	COG1271	oxidase subunit
BEN71_09660	COG1294	oxidase, subunit
BEN71_09725	COG0697	spore germination
BEN71_09730	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN71_09745	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN71_09750	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BEN71_09760	COG0488	(ABC) transporter
BEN71_09775	COG4771	TonB-dependent receptor
BEN71_09785	COG0596	Alpha beta hydrolase
BEN71_09800	COG2814	Major facilitator Superfamily
BEN71_09805	COG1346	cytolysis
BEN71_09815	COG0583	DNA-binding transcription factor activity
BEN71_09830	COG2205	protein histidine kinase activity
BEN71_09840	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
BEN71_09845	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
BEN71_09855	COG0730	response to heat
BEN71_09860	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BEN71_09875	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BEN71_09885	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BEN71_09890	COG1113	amino acid transport
BEN71_09895	COG0697	spore germination
BEN71_09900	COG0789	Transcriptional regulator
BEN71_09920	COG1944	ATP diphosphatase activity
BEN71_09945	COG0589	response to stress
BEN71_09960	COG1058	Belongs to the CinA family
BEN71_09960	COG1546	Belongs to the CinA family
BEN71_10000	COG1960	acyl-CoA dehydrogenase activity
BEN71_10005	COG1960	acyl-CoA dehydrogenase activity
BEN71_10015	COG2030	dehydratase
BEN71_10030	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BEN71_10035	COG3300	MHYT domain
BEN71_10035	COG5001	Diguanylate cyclase
BEN71_10070	COG0640	Transcriptional regulator
BEN71_10090	COG3122	Protein conserved in bacteria
BEN71_10110	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
BEN71_10135	COG2223	nitrite transmembrane transporter activity
BEN71_10180	COG0582	viral genome integration into host DNA
BEN71_10185	COG3772	lysozyme
BEN71_10305	COG4695	Portal protein
BEN71_10460	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
BEN71_10465	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BEN71_10470	COG2267	carboxylic ester hydrolase activity
BEN71_10475	COG0671	phosphoesterase, PA-phosphatase related
BEN71_10475	COG2453	phosphatase
BEN71_10490	COG4589	Belongs to the CDS family
BEN71_10510	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BEN71_10515	COG0702	epimerase
BEN71_10565	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_10570	COG0583	DNA-binding transcription factor activity
BEN71_10600	COG0424	maF-like protein
BEN71_10610	COG2826	transposase and inactivated derivatives, IS30 family
BEN71_10640	COG1324	tolerance protein
BEN71_10645	COG0673	inositol 2-dehydrogenase activity
BEN71_10665	COG2826	transposase and inactivated derivatives, IS30 family
BEN71_10670	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BEN71_10675	COG2937	Belongs to the GPAT DAPAT family
BEN71_10680	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BEN71_10680	COG2226	methyltransferase
BEN71_10680	COG0596	Alpha beta hydrolase
BEN71_10685	COG1309	transcriptional regulator
BEN71_10715	COG0667	Aldo Keto reductase
BEN71_10720	COG0583	DNA-binding transcription factor activity
BEN71_10725	COG3123	guanosine phosphorylase activity
BEN71_10740	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BEN71_10745	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
BEN71_10765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BEN71_10770	COG0772	Belongs to the SEDS family
BEN71_10780	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BEN71_10785	COG2161	toxin-antitoxin pair type II binding
BEN71_10790	COG4115	mRNA cleavage
BEN71_10800	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BEN71_10825	COG1902	pentaerythritol trinitrate reductase activity
BEN71_10825	COG0446	pyridine nucleotide-disulphide oxidoreductase
BEN71_10840	COG0477	Major facilitator Superfamily
BEN71_10875	COG1027	Aspartate ammonia-lyase
BEN71_10985	COG3772	lysozyme
BEN71_11080	COG4387	Mu-like prophage protein GP36
BEN71_11115	COG4383	Mu-like prophage protein gp29
BEN71_11265	COG0582	viral genome integration into host DNA
BEN71_11280	COG0308	aminopeptidase N
BEN71_11295	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BEN71_11310	COG1846	Transcriptional regulator
BEN71_11355	COG0542	response to heat
BEN71_11360	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BEN71_11370	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BEN71_11400	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
BEN71_11405	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
BEN71_11420	COG0569	domain protein
BEN71_11425	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BEN71_11430	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BEN71_11445	COG2431	L-lysine efflux transmembrane transporter activity
BEN71_11500	COG0590	tRNA wobble adenosine to inosine editing
BEN71_11510	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BEN71_11520	COG3156	type II secretion system protein K
BEN71_11545	COG0084	hydrolase, TatD family'
BEN71_11565	COG1663	tetraacyldisaccharide 4'-kinase activity
BEN71_11570	COG1132	(ABC) transporter
BEN71_11580	COG0811	peptide transport
BEN71_11585	COG1475	DNA binding
BEN71_11590	COG1192	Involved in chromosome partitioning
BEN71_11600	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
BEN71_11605	COG3178	'Phosphotransferase
BEN71_11615	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BEN71_11620	COG1923	regulation of RNA biosynthetic process
BEN71_11630	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BEN71_11635	COG0802	atpase or kinase
BEN71_11660	COG2707	UPF0756 membrane protein
BEN71_11675	COG0552	protein localization to endoplasmic reticulum
BEN71_11680	COG0612	Peptidase, M16
BEN71_11710	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BEN71_11710	COG0517	IMP dehydrogenase activity
BEN71_11725	COG0133	tryptophan synthase activity
BEN71_11735	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BEN71_11755	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BEN71_11845	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BEN71_11850	COG1454	alcohol dehydrogenase
BEN71_11860	COG0824	Thioesterase
BEN71_11885	COG0183	Belongs to the thiolase family
BEN71_11890	COG1454	alcohol dehydrogenase
BEN71_11895	COG4221	oxidoreductase activity
BEN71_11905	COG3284	Transcriptional regulator
BEN71_11915	COG0583	DNA-binding transcription factor activity
BEN71_11935	COG1309	transcriptional regulator
BEN71_11940	COG0519	Catalyzes the synthesis of GMP from XMP
BEN71_11940	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BEN71_11955	COG0668	transmembrane transport
BEN71_11970	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BEN71_11985	COG0386	Belongs to the glutathione peroxidase family
BEN71_11990	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BEN71_11995	COG0436	Aminotransferase
BEN71_12020	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BEN71_12025	COG1610	YqeY-like protein
BEN71_12035	COG4783	chaperone-mediated protein folding
BEN71_12055	COG0318	PFAM AMP-dependent synthetase and ligase
BEN71_12070	COG0729	surface antigen
BEN71_12075	COG0477	Major facilitator Superfamily
BEN71_12100	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BEN71_12110	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BEN71_12130	COG0204	Acyl-transferase
BEN71_12140	COG4771	TonB-dependent receptor
BEN71_12145	COG1741	Belongs to the pirin family
BEN71_12150	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BEN71_12155	COG1960	acyl-CoA dehydrogenase activity
BEN71_12175	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BEN71_12180	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BEN71_12185	COG3781	membrane
BEN71_12210	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BEN71_12215	COG4682	membrane
BEN71_12240	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BEN71_12245	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BEN71_12250	COG1845	cytochrome c oxidase, subunit III
BEN71_12255	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
BEN71_12260	COG0109	protoheme IX farnesyltransferase activity
BEN71_12280	COG0360	Binds together with S18 to 16S ribosomal RNA
BEN71_12285	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
BEN71_12295	COG0305	Participates in initiation and elongation during chromosome replication
BEN71_12310	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BEN71_12325	COG1305	Transglutaminase-like
BEN71_12335	COG2308	Evidence 4 Homologs of previously reported genes of
BEN71_12345	COG2814	Major facilitator Superfamily
BEN71_12355	COG2814	Major facilitator Superfamily
BEN71_12390	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BEN71_12395	COG0138	bifunctional purine biosynthesis protein purh
BEN71_12400	COG0151	Belongs to the GarS family
BEN71_12425	COG1464	Belongs to the NlpA lipoprotein family
BEN71_12430	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BEN71_12435	COG2011	ABC-type metal ion transport system permease component
BEN71_12555	COG0556	nucleotide-excision repair
BEN71_12565	COG3706	GGDEF domain
BEN71_12565	COG0745	RESPONSE REGULATOR receiver
BEN71_12670	COG3501	Rhs element vgr protein
BEN71_12705	COG2871	sodium ion transport
BEN71_12725	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BEN71_12735	COG0076	glutamate decarboxylase activity
BEN71_12740	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BEN71_12750	COG0671	phosphoesterase, PA-phosphatase related
BEN71_12775	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BEN71_12795	COG1022	Amp-dependent synthetase and ligase
BEN71_12820	COG4993	Dehydrogenase
BEN71_12825	COG0667	Aldo Keto reductase
BEN71_12845	COG0612	Peptidase, M16
BEN71_12865	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BEN71_12880	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
BEN71_12885	COG3161	chorismate lyase activity
BEN71_12895	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BEN71_12925	COG3139	Protein of unknown function (DUF1315)
BEN71_12930	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BEN71_12935	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BEN71_12945	COG0494	nUDIX hydrolase
BEN71_12955	COG0642	Histidine kinase
BEN71_12960	COG0745	RESPONSE REGULATOR receiver
BEN71_13005	COG1518	maintenance of DNA repeat elements
BEN71_13015	COG3327	negative regulation of DNA-templated transcription, initiation
BEN71_13020	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
BEN71_13025	COG0183	Belongs to the thiolase family
BEN71_13030	COG1250	3-hydroxyacyl-CoA dehydrogenase
BEN71_13035	COG1024	Enoyl-CoA hydratase
BEN71_13040	COG1024	Enoyl-CoA hydratase
BEN71_13045	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BEN71_13050	COG2151	metal-sulfur cluster biosynthetic enzyme
BEN71_13055	COG3396	Phenylacetate-CoA oxygenase
BEN71_13060	COG3460	Phenylacetate-CoA oxygenase
BEN71_13065	COG3396	Phenylacetate-CoA oxygenase
BEN71_13070	COG1012	belongs to the aldehyde dehydrogenase family
BEN71_13070	COG2030	dehydratase
BEN71_13080	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
BEN71_13085	COG0477	Major facilitator Superfamily
BEN71_13100	COG1116	anion transmembrane transporter activity
BEN71_13105	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN71_13115	COG0864	Transcriptional regulator
BEN71_13130	COG0439	Biotin carboxylase
BEN71_13145	COG1063	alcohol dehydrogenase
BEN71_13150	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BEN71_13155	COG0508	dehydrogenase complex catalyzes the overall conversion of
BEN71_13160	COG0022	dehydrogenase e1 component
BEN71_13165	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
BEN71_13170	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BEN71_13185	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BEN71_13190	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BEN71_13205	COG1686	Belongs to the peptidase S11 family
BEN71_13210	COG1252	NADH dehydrogenase
BEN71_13220	COG0415	Belongs to the DNA photolyase family
BEN71_13240	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BEN71_13245	COG1381	Involved in DNA repair and RecF pathway recombination
BEN71_13255	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BEN71_13260	COG0571	ribonuclease III activity
BEN71_13290	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BEN71_13320	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BEN71_13325	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BEN71_13330	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BEN71_13340	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
BEN71_13345	COG4208	sulfate ABC transporter
BEN71_13350	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
BEN71_13355	COG0583	DNA-binding transcription factor activity
BEN71_13375	COG0602	queuosine metabolic process
BEN71_13380	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BEN71_13395	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BEN71_13405	COG0583	DNA-binding transcription factor activity
BEN71_13420	COG1024	Enoyl-CoA hydratase
BEN71_13430	COG0778	Nitroreductase
BEN71_13495	COG1280	lysine exporter protein (LysE YggA)
BEN71_13500	COG1522	sequence-specific DNA binding
BEN71_13530	COG2234	aminopeptidase activity
BEN71_13535	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BEN71_13540	COG3384	dioxygenase
BEN71_13555	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
BEN71_13560	COG2878	Part of a membrane complex involved in electron transport
BEN71_13565	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BEN71_13595	COG0768	penicillin binding
BEN71_13600	COG0742	ribosomal rna small subunit methyltransferase
BEN71_13615	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_13620	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
BEN71_13630	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BEN71_13645	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BEN71_13650	COG1053	succinate dehydrogenase
BEN71_13655	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BEN71_13660	COG2009	succinate dehydrogenase
BEN71_13670	COG3104	oligopeptide transport
BEN71_13680	COG2072	flavoprotein involved in K transport
BEN71_13685	COG0300	oxidoreductase activity
BEN71_13710	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BEN71_13710	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BEN71_13735	COG2304	oxidoreductase activity
BEN71_13740	COG2304	oxidoreductase activity
BEN71_13745	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BEN71_13750	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BEN71_13755	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BEN71_13775	COG0505	Belongs to the CarA family
BEN71_13780	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BEN71_13795	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
BEN71_13800	COG0110	maltose O-acetyltransferase activity
BEN71_13815	COG1024	Enoyl-CoA hydratase
BEN71_13850	COG2321	neutral zinc metallopeptidase
BEN71_13855	COG2354	Protein conserved in bacteria
BEN71_13880	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BEN71_13885	COG1773	rubredoxin
BEN71_13890	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BEN71_13895	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
BEN71_13900	COG0583	DNA-binding transcription factor activity
BEN71_13935	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BEN71_13945	COG0321	lipoyl(octanoyl) transferase activity
BEN71_13960	COG0531	amino acid
BEN71_13970	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_13990	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BEN71_13995	COG1648	precorrin-2 dehydrogenase activity
BEN71_13995	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BEN71_14000	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
BEN71_14025	COG3670	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
BEN71_14030	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BEN71_14040	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BEN71_14055	COG0671	phosphoesterase, PA-phosphatase related
BEN71_14060	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN71_14070	COG1538	Outer membrane efflux protein
BEN71_14075	COG0393	Putative heavy-metal-binding
BEN71_14100	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_14110	COG0525	valine-tRNA ligase activity
BEN71_14180	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BEN71_14215	COG0582	viral genome integration into host DNA
BEN71_14240	COG0242	peptide deformylase activity
BEN71_14250	COG0477	Major facilitator Superfamily
BEN71_14255	COG0745	RESPONSE REGULATOR receiver
BEN71_14255	COG3706	GGDEF domain
BEN71_14290	COG1024	Enoyl-CoA hydratase
BEN71_14330	COG1215	transferase activity, transferring glycosyl groups
BEN71_14335	COG0726	polysaccharide deacetylase
BEN71_14335	COG1649	PFAM Uncharacterised BCR, COG1649
BEN71_14345	COG4681	YaeQ
BEN71_14350	COG0523	cobalamin synthesis protein
BEN71_14370	COG2188	Transcriptional regulator
BEN71_14385	COG0583	DNA-binding transcription factor activity
BEN71_14390	COG2814	Major facilitator Superfamily
BEN71_14395	COG1309	transcriptional regulator
BEN71_14405	COG1607	acyl-coa hydrolase
BEN71_14415	COG1752	Esterase of the alpha-beta hydrolase superfamily
BEN71_14420	COG2059	Chromate
BEN71_14425	COG0786	glutamate:sodium symporter activity
BEN71_14450	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BEN71_14480	COG0420	3'-5' exonuclease activity
BEN71_14525	COG0735	belongs to the Fur family
BEN71_14530	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BEN71_14535	COG2914	Belongs to the UPF0125 (RnfH) family
BEN71_14550	COG0121	glutamine amidotransferase
BEN71_14560	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BEN71_14565	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BEN71_14570	COG0756	dUTP diphosphatase activity
BEN71_14575	COG0210	DNA helicase
BEN71_14580	COG2885	chlorophyll binding
BEN71_14585	COG0204	Acyl-transferase
BEN71_14595	COG0850	regulation of cytokinetic process
BEN71_14600	COG2894	cell division
BEN71_14605	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BEN71_14625	COG1253	flavin adenine dinucleotide binding
BEN71_14630	COG2851	Citrate transporter
BEN71_14695	COG0175	sulfate reduction
BEN71_14710	COG0306	phosphate transporter
BEN71_14730	COG0210	DNA helicase
BEN71_14735	COG2814	Major facilitator Superfamily
BEN71_14740	COG1566	PFAM secretion protein HlyD family protein
BEN71_14745	COG2050	protein possibly involved in aromatic compounds catabolism
BEN71_14755	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BEN71_14760	COG1090	epimerase
BEN71_14770	COG2814	Major facilitator Superfamily
BEN71_14775	COG1289	transmembrane transporter activity
BEN71_14785	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BEN71_14840	COG2832	Protein of unknown function (DUF454)
BEN71_14870	COG0840	transmembrane signaling receptor activity
BEN71_14895	COG0442	prolyl-tRNA aminoacylation
BEN71_14970	COG0489	protein tyrosine kinase activity
BEN71_15025	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN71_15025	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BEN71_15030	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
BEN71_15035	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
BEN71_15055	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BEN71_15060	COG0601	transmembrane transport
BEN71_15070	COG4166	transmembrane transport
BEN71_15075	COG4166	transmembrane transport
BEN71_15110	COG2824	Alkylphosphonate utilization operon protein PhnA
BEN71_15140	COG1408	metallophosphoesterase
BEN71_15145	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BEN71_15155	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BEN71_15165	COG1346	cytolysis
BEN71_15190	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BEN71_15195	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BEN71_15205	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BEN71_15210	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BEN71_15215	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BEN71_15230	COG0625	glutathione transferase activity
BEN71_15235	COG2969	positive regulation of protein catabolic process
BEN71_15310	COG0354	folic acid binding
BEN71_15335	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
BEN71_15360	COG0285	dihydrofolate synthase activity
BEN71_15365	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BEN71_15400	COG0183	Belongs to the thiolase family
BEN71_15410	COG2207	Transcriptional regulator
BEN71_15415	COG1804	L-carnitine dehydratase bile acid-inducible protein F
BEN71_15430	COG0494	nUDIX hydrolase
BEN71_15445	COG3422	double-strand break repair
BEN71_15465	COG4106	trans-aconitate 2-methyltransferase activity
BEN71_15480	COG2267	carboxylic ester hydrolase activity
BEN71_15485	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BEN71_15490	COG2193	ferroxidase activity
BEN71_15525	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
BEN71_15535	COG1196	nuclear chromosome segregation
BEN71_15565	COG0730	response to heat
BEN71_15585	COG3545	Serine hydrolase
BEN71_15590	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BEN71_15630	COG1388	LysM domain
BEN71_15630	COG3942	CHAP domain
BEN71_15650	COG2153	protein acetylation
BEN71_15660	COG1272	protein, Hemolysin III
BEN71_15665	COG0477	Major facilitator Superfamily
BEN71_15670	COG0564	pseudouridine synthase activity
BEN71_15680	COG1024	Enoyl-CoA hydratase
BEN71_15685	COG1960	acyl-CoA dehydrogenase activity
BEN71_15690	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BEN71_15695	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_15705	COG1309	transcriptional regulator
BEN71_15710	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BEN71_15720	COG1960	acyl-CoA dehydrogenase activity
BEN71_15725	COG1960	acyl-CoA dehydrogenase activity
BEN71_15730	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BEN71_15790	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BEN71_15800	COG1764	response to oxidative stress
BEN71_15850	COG3384	dioxygenase
BEN71_15865	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BEN71_15875	COG0133	tryptophan synthase activity
BEN71_15885	COG4206	TonB-dependent receptor
BEN71_15890	COG2096	Adenosyltransferase
BEN71_15910	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BEN71_15930	COG2315	Protein conserved in bacteria
BEN71_15935	COG0745	RESPONSE REGULATOR receiver
BEN71_15940	COG2205	protein histidine kinase activity
BEN71_15950	COG3028	Belongs to the UPF0307 family
BEN71_15955	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BEN71_15960	COG1660	Displays ATPase and GTPase activities
BEN71_15965	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
BEN71_15975	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BEN71_15980	COG0617	tRNA 3'-terminal CCA addition
BEN71_15985	COG1555	photosystem II stabilization
BEN71_15985	COG1596	polysaccharide export
BEN71_15990	COG3956	TIGRFAM MazG family protein
BEN71_16005	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BEN71_16025	COG0784	Response regulator, receiver
BEN71_16025	COG2205	protein histidine kinase activity
BEN71_16025	COG5002	protein histidine kinase activity
BEN71_16030	COG1024	Enoyl-CoA hydratase
BEN71_16035	COG2084	Dehydrogenase
BEN71_16040	COG3622	Belongs to the hyi family
BEN71_16050	COG0004	ammonium transporteR
BEN71_16065	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BEN71_16080	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BEN71_16085	COG1426	Protein conserved in bacteria
BEN71_16130	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BEN71_16135	COG0440	acetolactate synthase activity
BEN71_16140	COG0028	Belongs to the TPP enzyme family
BEN71_16165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BEN71_16170	COG0577	efflux transmembrane transporter activity
BEN71_16170	COG1136	(ABC) transporter
BEN71_16175	COG1538	Outer membrane efflux protein
BEN71_16210	COG3501	Rhs element vgr protein
BEN71_16225	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BEN71_16230	COG1162	GTPase activity
BEN71_16265	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
BEN71_16270	COG2003	Belongs to the UPF0758 family
BEN71_16275	COG3781	membrane
BEN71_16305	COG1946	Acyl-CoA thioesterase
BEN71_16325	COG1295	ribonuclease BN
BEN71_16355	COG0179	Fumarylacetoacetate (FAA) hydrolase
BEN71_16380	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BEN71_16385	COG1126	abc transporter atp-binding protein
BEN71_16390	COG0765	amino acid transport
BEN71_16395	COG0765	amino acid transport
BEN71_16430	COG0557	exoribonuclease II activity
BEN71_16445	COG0339	signal peptide processing
BEN71_16450	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
BEN71_16485	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
BEN71_16490	COG1960	acyl-CoA dehydrogenase activity
BEN71_16510	COG2072	flavoprotein involved in K transport
BEN71_16515	COG0203	ribosomal protein L17
BEN71_16520	COG0202	RNA polymerase activity
BEN71_16530	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BEN71_16540	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BEN71_16560	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BEN71_16570	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BEN71_16575	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BEN71_16580	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BEN71_16585	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BEN71_16595	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BEN71_16615	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BEN71_16625	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BEN71_16640	COG0088	Forms part of the polypeptide exit tunnel
BEN71_16650	COG0051	transcription antitermination factor activity, RNA binding
BEN71_16660	COG0626	cystathionine gamma-synthase activity
BEN71_16665	COG0433	COG0433 Predicted ATPase
BEN71_16670	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BEN71_16670	COG1017	nitric oxide dioxygenase activity
BEN71_16675	COG1959	2 iron, 2 sulfur cluster binding
BEN71_16695	COG1301	dicarboxylic acid transport
BEN71_16700	COG1946	Acyl-CoA thioesterase
BEN71_16705	COG2937	Belongs to the GPAT DAPAT family
BEN71_16735	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BEN71_16740	COG1040	competence protein
BEN71_16745	COG0494	nUDIX hydrolase
BEN71_16755	COG0598	Magnesium transport protein CorA
BEN71_16765	COG2854	intermembrane phospholipid transfer
BEN71_16770	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BEN71_16775	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BEN71_16780	COG1127	ABC transporter
BEN71_16785	COG0513	Belongs to the DEAD box helicase family
BEN71_16800	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BEN71_16805	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BEN71_16810	COG0408	coproporphyrinogen oxidase activity
BEN71_16830	COG2826	transposase and inactivated derivatives, IS30 family
BEN71_16835	COG1960	acyl-CoA dehydrogenase activity
BEN71_16845	COG2814	Major facilitator Superfamily
BEN71_16850	COG1733	regulation of RNA biosynthetic process
BEN71_16855	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BEN71_16865	COG0534	Mate efflux family protein
BEN71_16875	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
BEN71_16880	COG0254	rRNA binding
BEN71_16885	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BEN71_16900	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
BEN71_16920	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BEN71_16940	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BEN71_16955	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
BEN71_16965	COG0644	oxidoreductase
BEN71_16965	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
BEN71_16985	COG3501	Rhs element vgr protein
BEN71_16990	COG0425	Belongs to the sulfur carrier protein TusA family
BEN71_16995	COG4535	Mg2 and Co2 transporter CorC
BEN71_17000	COG0815	Transfers the fatty acyl group on membrane lipoproteins
BEN71_17025	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BEN71_17050	COG0628	permease
BEN71_17055	COG2032	superoxide dismutase activity
BEN71_17070	COG1289	transmembrane transporter activity
BEN71_17075	COG2814	Major facilitator Superfamily
BEN71_17110	COG0277	FAD linked oxidase domain protein
BEN71_17115	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BEN71_17120	COG5006	permease, DMT superfamily
BEN71_17145	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
BEN71_17175	COG2111	Na H antiporter
BEN71_17175	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
BEN71_17180	COG1006	Multisubunit Na H antiporter MnhC subunit
BEN71_17185	COG0651	ATP synthesis coupled electron transport
BEN71_17195	COG2212	antiporter activity
BEN71_17205	COG0307	riboflavin synthase, alpha
BEN71_17215	COG0493	'glutamate synthase
BEN71_17220	COG0067	glutamate synthase
BEN71_17220	COG0070	glutamate synthase
BEN71_17220	COG0069	glutamate synthase activity
BEN71_17270	COG2226	methyltransferase
BEN71_17275	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BEN71_17280	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BEN71_17285	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
BEN71_17310	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
BEN71_17380	COG4221	oxidoreductase activity
BEN71_17390	COG0745	RESPONSE REGULATOR receiver
BEN71_17395	COG2205	protein histidine kinase activity
BEN71_17400	COG0427	acetyl-CoA hydrolase
BEN71_17445	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BEN71_17485	COG0697	spore germination
BEN71_17490	COG2329	Antibiotic biosynthesis monooxygenase
BEN71_17520	COG0488	(ABC) transporter
BEN71_17550	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BEN71_17560	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
BEN71_17565	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BEN71_17570	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BEN71_17575	COG0772	Belongs to the SEDS family
BEN71_17585	COG0586	Pfam SNARE associated Golgi protein
BEN71_17600	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BEN71_17600	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BEN71_17610	COG0004	ammonium transporteR
BEN71_17615	COG0347	Belongs to the P(II) protein family
BEN71_17625	COG0606	chelatase, subunit chli
BEN71_17655	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BEN71_17670	COG0318	PFAM AMP-dependent synthetase and ligase
BEN71_17695	COG0477	Major facilitator Superfamily
BEN71_17700	COG2860	membrane
BEN71_17720	COG1253	flavin adenine dinucleotide binding
BEN71_17765	COG3706	GGDEF domain
BEN71_17780	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BEN71_17790	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BEN71_17795	COG3162	membrane
BEN71_17800	COG0784	Response regulator, receiver
BEN71_17800	COG2205	protein histidine kinase activity
BEN71_17825	COG0655	NAD(P)H dehydrogenase (quinone) activity
BEN71_17865	COG1309	transcriptional regulator
BEN71_17895	COG1652	LysM domain
BEN71_17900	COG0758	DNA mediated transformation
BEN71_17905	COG0009	L-threonylcarbamoyladenylate synthase
BEN71_17910	COG0697	spore germination
BEN71_17915	COG1309	transcriptional regulator
BEN71_17920	COG2814	Major facilitator Superfamily
BEN71_17935	COG0386	Belongs to the glutathione peroxidase family
BEN71_17975	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BEN71_17985	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BEN71_18015	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
BEN71_18025	COG1121	(ABC) transporter
BEN71_18030	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BEN71_18040	COG1280	lysine exporter protein (LysE YggA)
BEN71_18045	COG2837	iron assimilation
BEN71_18065	COG3501	Rhs element vgr protein
BEN71_18070	COG0281	malic enzyme
BEN71_18095	COG0745	RESPONSE REGULATOR receiver
BEN71_18100	COG2205	protein histidine kinase activity
BEN71_18105	COG4452	Inner membrane protein CreD
BEN71_18135	COG2814	Major facilitator Superfamily
BEN71_18145	COG0431	NADPH-dependent FMN reductase
BEN71_18165	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BEN71_18175	COG0668	transmembrane transport
BEN71_18180	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BEN71_18185	COG1519	Transferase
BEN71_18190	COG1902	pentaerythritol trinitrate reductase activity
BEN71_18220	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BEN71_18220	COG0519	Catalyzes the synthesis of GMP from XMP
BEN71_18230	COG2259	Doxx family
BEN71_18235	COG0586	Pfam SNARE associated Golgi protein
BEN71_18245	COG1192	Involved in chromosome partitioning
BEN71_18255	COG0271	Belongs to the BolA IbaG family
BEN71_18275	COG1802	Transcriptional regulator
BEN71_18325	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BEN71_18335	COG2271	Major facilitator Superfamily
BEN71_18340	COG1335	isochorismatase
BEN71_18345	COG3473	Maleate cis-trans isomerase
BEN71_18350	COG0596	Alpha beta hydrolase
BEN71_18355	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BEN71_18360	COG2309	aminopeptidase activity
BEN71_18365	COG1846	Transcriptional regulator
BEN71_18390	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BEN71_18395	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BEN71_18410	COG1210	Utp--glucose-1-phosphate uridylyltransferase
BEN71_18415	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BEN71_18430	COG0463	Glycosyl transferase, family 2
BEN71_18430	COG1216	Glycosyl transferase, family 2
BEN71_18440	COG1216	Glycosyl transferase, family 2
BEN71_18455	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BEN71_18460	COG1091	dTDP-4-dehydrorhamnose reductase activity
BEN71_18470	COG1596	polysaccharide export
BEN71_18515	COG3023	N-Acetylmuramoyl-L-alanine amidase
BEN71_18545	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BEN71_18555	COG1683	Conserved Protein
BEN71_18560	COG0385	Bile acid
BEN71_18565	COG1335	isochorismatase
BEN71_18570	COG2814	Major facilitator Superfamily
BEN71_18575	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BEN71_18600	COG1017	nitric oxide dioxygenase activity
BEN71_18600	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BEN71_18610	COG1309	transcriptional regulator
BEN71_18625	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BEN71_18630	COG0546	phosphoglycolate phosphatase activity
BEN71_18635	COG1028	Short-chain dehydrogenase reductase Sdr
BEN71_18655	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BEN71_18655	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
BEN71_18665	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BEN71_18670	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
BEN71_18675	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
BEN71_18680	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BEN71_18685	COG1116	anion transmembrane transporter activity
BEN71_18690	COG1309	transcriptional regulator
BEN71_18835	COG0737	Belongs to the 5'-nucleotidase family
BEN71_18845	COG2175	clavaminate synthase activity
BEN71_18850	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BEN71_18855	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
BEN71_18860	COG4521	taurine ABC transporter
BEN71_18880	COG0443	Heat shock 70 kDa protein
BEN71_18885	COG0789	Transcriptional regulator
BEN71_18920	COG2951	lytic endotransglycosylase activity
BEN71_18930	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
BEN71_18955	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BEN71_18980	COG2388	GCN5-related N-acetyl-transferase
BEN71_18985	COG2388	GCN5-related N-acetyl-transferase
BEN71_18990	COG2814	Major facilitator Superfamily
BEN71_18995	COG0861	Integral membrane protein TerC family
BEN71_19015	COG0754	glutathionylspermidine amidase activity
BEN71_19030	COG0402	S-adenosylhomocysteine deaminase activity
BEN71_19045	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BEN71_19080	COG0706	membrane insertase activity
BEN71_19085	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
BEN71_19095	COG0230	Belongs to the bacterial ribosomal protein bL34 family