locus-tag class description TQ29_00025 PF00814 Glycoprotease family TQ29_00030 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TQ29_00030 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TQ29_00050 PF05221 S-adenosyl-L-homocysteine hydrolase TQ29_00050 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain TQ29_00055 PF01966 HD domain TQ29_00065 PF02954 Bacterial regulatory protein, Fis family TQ29_00065 PF00072 Response regulator receiver domain TQ29_00070 PF02630 SCO1/SenC TQ29_00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_00075 PF00512 His Kinase A (phospho-acceptor) domain TQ29_00080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_00080 PF00512 His Kinase A (phospho-acceptor) domain TQ29_00085 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE TQ29_00090 PF01636 Phosphotransferase enzyme family TQ29_00095 PF12804 MobA-like NTP transferase domain TQ29_00100 PF12705 PD-(D/E)XK nuclease superfamily TQ29_00105 PF12705 PD-(D/E)XK nuclease superfamily TQ29_00105 PF00580 UvrD/REP helicase N-terminal domain TQ29_00105 PF13361 UvrD-like helicase C-terminal domain TQ29_00110 PF00085 Thioredoxin TQ29_00120 PF00227 Proteasome subunit TQ29_00125 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_00125 PF07724 AAA domain (Cdc48 subfamily) TQ29_00150 PF04186 FxsA cytoplasmic membrane protein TQ29_00155 PF02556 Preprotein translocase subunit SecB TQ29_00160 PF00929 Exonuclease TQ29_00165 PF01121 Dephospho-CoA kinase TQ29_00170 PF18317 Shikimate 5'-dehydrogenase C-terminal domain TQ29_00170 PF01488 Shikimate / quinate 5-dehydrogenase TQ29_00170 PF08501 Shikimate dehydrogenase substrate binding domain TQ29_00175 PF02545 Maf-like protein TQ29_00180 PF03653 Uncharacterised protein family (UPF0093) TQ29_00185 PF07497 Rho termination factor, RNA-binding domain TQ29_00185 PF07498 Rho termination factor, N-terminal domain TQ29_00185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TQ29_00190 PF01926 50S ribosome-binding GTPase TQ29_00190 PF12631 MnmE helical domain TQ29_00190 PF10396 GTP-binding protein TrmE N-terminus TQ29_00195 PF01134 Glucose inhibited division protein A TQ29_00195 PF13932 GidA associated domain TQ29_00200 PF02527 rRNA small subunit methyltransferase G TQ29_00205 PF13614 AAA domain TQ29_00210 PF17762 HTH domain found in ParB protein TQ29_00210 PF02195 ParB-like nuclease domain TQ29_00220 PF06969 HemN C-terminal domain TQ29_00220 PF04055 Radical SAM superfamily TQ29_00225 PF01725 Ham1 family TQ29_00230 PF03725 3' exoribonuclease family, domain 2 TQ29_00230 PF01138 3' exoribonuclease family, domain 1 TQ29_00235 PF01628 HrcA protein C terminal domain TQ29_00240 PF01025 GrpE TQ29_00245 PF01624 MutS domain I TQ29_00245 PF05188 MutS domain II TQ29_00245 PF05192 MutS domain III TQ29_00245 PF05190 MutS family domain IV TQ29_00245 PF00488 MutS domain V TQ29_00250 PF03949 Malic enzyme, NAD binding domain TQ29_00250 PF00390 Malic enzyme, N-terminal domain TQ29_00250 PF01515 Phosphate acetyl/butaryl transferase TQ29_00255 PF00294 pfkB family carbohydrate kinase TQ29_00260 PF01625 Peptide methionine sulfoxide reductase TQ29_00270 PF00764 Arginosuccinate synthase TQ29_00280 PF00072 Response regulator receiver domain TQ29_00280 PF00486 Transcriptional regulatory protein, C terminal TQ29_00285 PF00293 NUDIX domain TQ29_00290 PF01430 Hsp33 protein TQ29_00295 PF00293 NUDIX domain TQ29_00300 PF13735 tRNA nucleotidyltransferase domain 2 putative TQ29_00300 PF12627 Probable RNA and SrmB- binding site of polymerase A TQ29_00300 PF01743 Poly A polymerase head domain TQ29_00305 PF00664 ABC transporter transmembrane region TQ29_00305 PF00005 ABC transporter TQ29_00310 PF00664 ABC transporter transmembrane region TQ29_00310 PF00005 ABC transporter TQ29_00315 PF05958 tRNA (Uracil-5-)-methyltransferase TQ29_00320 PF03734 L,D-transpeptidase catalytic domain TQ29_00330 PF03734 L,D-transpeptidase catalytic domain TQ29_00340 PF00762 Ferrochelatase TQ29_00350 PF00156 Phosphoribosyl transferase domain TQ29_00355 PF00462 Glutaredoxin TQ29_00360 PF00795 Carbon-nitrogen hydrolase TQ29_00375 PF00561 alpha/beta hydrolase fold TQ29_00380 PF02576 RimP N-terminal domain TQ29_00380 PF17384 RimP C-terminal SH3 domain TQ29_00385 PF13184 NusA-like KH domain TQ29_00385 PF00575 S1 RNA binding domain TQ29_00385 PF08529 NusA N-terminal domain TQ29_00395 PF04760 Translation initiation factor IF-2, N-terminal region TQ29_00395 PF00009 Elongation factor Tu GTP binding domain TQ29_00395 PF08364 Bacterial translation initiation factor IF-2 associated region TQ29_00395 PF11987 Translation-initiation factor 2 TQ29_00400 PF00293 NUDIX domain TQ29_00405 PF01960 ArgJ family TQ29_00410 PF05698 Bacterial trigger factor protein (TF) C-terminus TQ29_00415 PF07517 SecA DEAD-like domain TQ29_00415 PF07516 SecA Wing and Scaffold domain TQ29_00415 PF02810 SEC-C motif TQ29_00415 PF01043 SecA preprotein cross-linking domain TQ29_00430 PF04002 RadC-like JAB domain TQ29_00435 PF01556 DnaJ C terminal domain TQ29_00435 PF00684 DnaJ central domain TQ29_00435 PF00226 DnaJ domain TQ29_00440 PF00012 Hsp70 protein TQ29_00445 PF13532 2OG-Fe(II) oxygenase superfamily TQ29_00455 PF00459 Inositol monophosphatase family TQ29_00460 PF02348 Cytidylyltransferase TQ29_00470 PF00483 Nucleotidyl transferase TQ29_00475 PF16363 GDP-mannose 4,6 dehydratase TQ29_00480 PF00534 Glycosyl transferases group 1 TQ29_00480 PF13439 Glycosyltransferase Family 4 TQ29_00500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 TQ29_00505 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein TQ29_00505 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus TQ29_00510 PF00005 ABC transporter TQ29_00525 PF00571 CBS domain TQ29_00525 PF01380 SIS domain TQ29_00530 PF00476 DNA polymerase family A TQ29_00530 PF01612 3'-5' exonuclease TQ29_00555 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_00585 PF02566 OsmC-like protein TQ29_00590 PF01047 MarR family TQ29_00595 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_00595 PF00107 Zinc-binding dehydrogenase TQ29_00600 PF01738 Dienelactone hydrolase family TQ29_00615 PF02673 Bacitracin resistance protein BacA TQ29_00620 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_00620 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TQ29_00635 PF01493 GXGXG motif TQ29_00635 PF01645 Conserved region in glutamate synthase TQ29_00635 PF04898 Glutamate synthase central domain TQ29_00635 PF00310 Glutamine amidotransferases class-II TQ29_00640 PF00912 Transglycosylase TQ29_00645 PF00043 Glutathione S-transferase, C-terminal domain TQ29_00645 PF13417 Glutathione S-transferase, N-terminal domain TQ29_00650 PF08331 Domain of unknown function (DUF1730) TQ29_00675 PF00535 Glycosyl transferase family 2 TQ29_00695 PF02397 Bacterial sugar transferase TQ29_00725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TQ29_00725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TQ29_00725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TQ29_00730 PF00534 Glycosyl transferases group 1 TQ29_00730 PF08323 Starch synthase catalytic domain TQ29_00785 PF00691 OmpA family TQ29_00785 PF13677 Membrane MotB of proton-channel complex MotA/MotB TQ29_00790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TQ29_00790 PF00460 Flagella basal body rod protein TQ29_00790 PF07559 Flagellar basal body protein FlaE TQ29_00805 PF02119 Flagellar P-ring protein TQ29_00810 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TQ29_00810 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TQ29_00810 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TQ29_00815 PF00813 FliP family TQ29_00820 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term TQ29_00830 PF01514 Secretory protein of YscJ/FliF family TQ29_00830 PF08345 Flagellar M-ring protein C-terminal TQ29_00850 PF01618 MotA/TolQ/ExbB proton channel family TQ29_00865 PF00771 FHIPEP family TQ29_00875 PF01312 FlhB HrpN YscU SpaS Family TQ29_00890 PF02107 Flagellar L-ring protein TQ29_00900 PF00460 Flagella basal body rod protein TQ29_00900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TQ29_00905 PF00460 Flagella basal body rod protein TQ29_00905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TQ29_00910 PF01313 Bacterial export proteins, family 3 TQ29_00915 PF02049 Flagellar hook-basal body complex protein FliE TQ29_00920 PF00460 Flagella basal body rod protein TQ29_00920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal TQ29_00925 PF00460 Flagella basal body rod protein TQ29_00940 PF07378 Flagellar protein FlbT TQ29_00950 PF00700 Bacterial flagellin C-terminal helical region TQ29_00950 PF00669 Bacterial flagellin N-terminal helical region TQ29_00970 PF03963 Flagellar hook capping protein - N-terminal region TQ29_00975 PF03109 ABC1 family TQ29_00980 PF01209 ubiE/COQ5 methyltransferase family TQ29_00985 PF06827 Zinc finger found in FPG and IleRS TQ29_00985 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain TQ29_00985 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain TQ29_00990 PF00378 Enoyl-CoA hydratase/isomerase TQ29_00995 PF01649 Ribosomal protein S20 TQ29_01000 PF11638 DnaA N-terminal domain TQ29_01000 PF08299 Bacterial dnaA protein helix-turn-helix TQ29_01000 PF00308 Bacterial dnaA protein TQ29_01005 PF02768 DNA polymerase III beta subunit, C-terminal domain TQ29_01005 PF02767 DNA polymerase III beta subunit, central domain TQ29_01005 PF00712 DNA polymerase III beta subunit, N-terminal domain TQ29_01010 PF02463 RecF/RecN/SMC N terminal domain TQ29_01020 PF01810 LysE type translocator TQ29_01025 PF01751 Toprim domain TQ29_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_01025 PF00204 DNA gyrase B TQ29_01025 PF00986 DNA gyrase B subunit, carboxyl terminus TQ29_01030 PF17773 UPF0176 acylphosphatase like domain TQ29_01030 PF00581 Rhodanese-like domain TQ29_01035 PF00012 Hsp70 protein TQ29_01040 PF00857 Isochorismatase family TQ29_01045 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain TQ29_01045 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family TQ29_01050 PF13784 Fic/DOC family N-terminal TQ29_01050 PF02661 Fic/DOC family TQ29_01055 PF00472 RF-1 domain TQ29_01060 PF02592 Putative vitamin uptake transporter TQ29_01065 PF03411 Penicillin-insensitive murein endopeptidase TQ29_01080 PF02325 YGGT family TQ29_01085 PF00270 DEAD/DEAH box helicase TQ29_01085 PF00271 Helicase conserved C-terminal domain TQ29_01085 PF00570 HRDC domain TQ29_01085 PF16124 RecQ zinc-binding TQ29_01085 PF09382 RQC domain TQ29_01090 PF03883 Peroxide stress protein YaaA TQ29_01100 PF00149 Calcineurin-like phosphoesterase TQ29_01105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TQ29_01105 PF01842 ACT domain TQ29_01105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TQ29_01125 PF04055 Radical SAM superfamily TQ29_01135 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal TQ29_01135 PF14602 Hexapeptide repeat of succinyl-transferase TQ29_01135 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_01150 PF00497 Bacterial extracellular solute-binding proteins, family 3 TQ29_01165 PF07687 Peptidase dimerisation domain TQ29_01165 PF01546 Peptidase family M20/M25/M40 TQ29_01170 PF17876 Cold shock domain TQ29_01170 PF08461 Ribonuclease R winged-helix domain TQ29_01170 PF08206 Ribonuclease B OB domain TQ29_01170 PF00575 S1 RNA binding domain TQ29_01170 PF00773 RNB domain TQ29_01175 PF13406 Transglycosylase SLT domain TQ29_01180 PF00293 NUDIX domain TQ29_01185 PF13180 PDZ domain TQ29_01185 PF03572 Peptidase family S41 TQ29_01195 PF06415 BPG-independent PGAM N-terminus (iPGM_N) TQ29_01195 PF01676 Metalloenzyme superfamily TQ29_01200 PF02590 Predicted SPOUT methyltransferase TQ29_01210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_01210 PF00005 ABC transporter TQ29_01220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_01225 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_01225 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_01230 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_01245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_01250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_01250 PF00005 ABC transporter TQ29_01255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_01255 PF00005 ABC transporter TQ29_01260 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_01265 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_01265 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_01280 PF00924 Mechanosensitive ion channel TQ29_01280 PF12795 Mechanosensitive ion channel porin domain TQ29_01280 PF12794 Mechanosensitive ion channel inner membrane domain 1 TQ29_01285 PF00330 Aconitase family (aconitate hydratase) TQ29_01295 PF00694 Aconitase C-terminal domain TQ29_01310 PF00180 Isocitrate/isopropylmalate dehydrogenase TQ29_01315 PF00892 EamA-like transporter family TQ29_01330 PF01118 Semialdehyde dehydrogenase, NAD binding domain TQ29_01330 PF02774 Semialdehyde dehydrogenase, dimerisation domain TQ29_01335 PF00484 Carbonic anhydrase TQ29_01345 PF02789 Cytosol aminopeptidase family, N-terminal domain TQ29_01345 PF00883 Cytosol aminopeptidase family, catalytic domain TQ29_01350 PF00877 NlpC/P60 family TQ29_01360 PF00440 Bacterial regulatory proteins, tetR family TQ29_01360 PF18665 Tetracyclin repressor-like, C-terminal domain TQ29_01370 PF00756 Putative esterase TQ29_01375 PF17843 MycE methyltransferase N-terminal TQ29_01380 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 TQ29_01390 PF02423 Ornithine cyclodeaminase/mu-crystallin family TQ29_01395 PF12697 Alpha/beta hydrolase family TQ29_01400 PF07690 Major Facilitator Superfamily TQ29_01405 PF03969 AFG1-like ATPase TQ29_01410 PF08245 Mur ligase middle domain TQ29_01410 PF02875 Mur ligase family, glutamate ligase domain TQ29_01415 PF01039 Carboxyl transferase domain TQ29_01415 PF17848 Acetyl-coA carboxylase zinc finger domain TQ29_01425 PF00920 Dehydratase family TQ29_01445 PF03466 LysR substrate binding domain TQ29_01445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_01450 PF00691 OmpA family TQ29_01450 PF13488 Glycine zipper TQ29_01460 PF02464 Competence-damaged protein TQ29_01460 PF18146 Damage-inducible protein CinA KH domain TQ29_01460 PF00994 Probable molybdopterin binding domain TQ29_01465 PF03749 Sugar fermentation stimulation protein RE domain TQ29_01465 PF17746 SfsA N-terminal OB domain TQ29_01470 PF00557 Metallopeptidase family M24 TQ29_01480 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_01480 PF14759 Reductase C-terminal TQ29_01485 PF08534 Redoxin TQ29_01490 PF00924 Mechanosensitive ion channel TQ29_01490 PF05552 Conserved TM helix TQ29_01495 PF01329 Pterin 4 alpha carbinolamine dehydratase TQ29_01515 PF00529 HlyD membrane-fusion protein of T1SS TQ29_01515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TQ29_01520 PF00664 ABC transporter transmembrane region TQ29_01520 PF00005 ABC transporter TQ29_01535 PF00905 Penicillin binding protein transpeptidase domain TQ29_01535 PF17092 Penicillin-binding protein OB-like domain TQ29_01535 PF00912 Transglycosylase TQ29_01540 PF00543 Nitrogen regulatory protein P-II TQ29_01545 PF00909 Ammonium Transporter Family TQ29_01550 PF00155 Aminotransferase class I and II TQ29_01555 PF00581 Rhodanese-like domain TQ29_01565 PF01668 SmpB protein TQ29_01570 PF00701 Dihydrodipicolinate synthetase family TQ29_01575 PF01464 Transglycosylase SLT domain TQ29_01575 PF14718 Soluble lytic murein transglycosylase L domain TQ29_01585 PF05430 S-adenosyl-L-methionine-dependent methyltransferase TQ29_01585 PF01266 FAD dependent oxidoreductase TQ29_01595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TQ29_01600 PF04172 LrgB-like family TQ29_01625 PF02463 RecF/RecN/SMC N terminal domain TQ29_01635 PF13409 Glutathione S-transferase, N-terminal domain TQ29_01645 PF00155 Aminotransferase class I and II TQ29_01650 PF01327 Polypeptide deformylase TQ29_01655 PF01327 Polypeptide deformylase TQ29_01660 PF00551 Formyl transferase TQ29_01660 PF02911 Formyl transferase, C-terminal domain TQ29_01670 PF00075 RNase H TQ29_01680 PF02401 LytB protein TQ29_01690 PF01192 RNA polymerase Rpb6 TQ29_01695 PF13291 ACT domain TQ29_01695 PF04607 Region found in RelA / SpoT proteins TQ29_01695 PF02824 TGS domain TQ29_01705 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ TQ29_01710 PF01648 4'-phosphopantetheinyl transferase superfamily TQ29_01715 PF10502 Signal peptidase, peptidase S26 TQ29_01720 PF00035 Double-stranded RNA binding motif TQ29_01720 PF14622 Ribonuclease-III-like TQ29_01725 PF07650 KH domain TQ29_01725 PF01926 50S ribosome-binding GTPase TQ29_01735 PF02565 Recombination protein O C terminal TQ29_01735 PF11967 Recombination protein O N terminal TQ29_01745 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_01745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_01745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_01755 PF01293 Phosphoenolpyruvate carboxykinase TQ29_01760 PF00072 Response regulator receiver domain TQ29_01760 PF00486 Transcriptional regulatory protein, C terminal TQ29_01765 PF13756 Stimulus-sensing domain TQ29_01765 PF13755 Sensor N-terminal transmembrane domain TQ29_01765 PF00672 HAMP domain TQ29_01765 PF00512 His Kinase A (phospho-acceptor) domain TQ29_01765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_01775 PF03668 P-loop ATPase protein family TQ29_01785 PF00381 PTS HPr component phosphorylation site TQ29_01795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TQ29_01795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TQ29_01805 PF01012 Electron transfer flavoprotein domain TQ29_01805 PF00766 Electron transfer flavoprotein FAD-binding domain TQ29_01810 PF01012 Electron transfer flavoprotein domain TQ29_01815 PF01923 Cobalamin adenosyltransferase TQ29_01825 PF00106 short chain dehydrogenase TQ29_01835 PF03989 DNA gyrase C-terminal domain, beta-propeller TQ29_01835 PF00521 DNA gyrase/topoisomerase IV, subunit A TQ29_01845 PF00009 Elongation factor Tu GTP binding domain TQ29_01845 PF03144 Elongation factor Tu domain 2 TQ29_01845 PF03143 Elongation factor Tu C-terminal domain TQ29_01865 PF00467 KOW motif TQ29_01865 PF02357 Transcription termination factor nusG TQ29_01870 PF00298 Ribosomal protein L11, RNA binding domain TQ29_01870 PF03946 Ribosomal protein L11, N-terminal domain TQ29_01875 PF00687 Ribosomal protein L1p/L10e family TQ29_01880 PF00466 Ribosomal protein L10 TQ29_01885 PF00542 Ribosomal protein L7/L12 C-terminal domain TQ29_01885 PF16320 Ribosomal protein L7/L12 dimerisation domain TQ29_01890 PF04561 RNA polymerase Rpb2, domain 2 TQ29_01890 PF04565 RNA polymerase Rpb2, domain 3 TQ29_01890 PF10385 RNA polymerase beta subunit external 1 domain TQ29_01890 PF00562 RNA polymerase Rpb2, domain 6 TQ29_01890 PF04560 RNA polymerase Rpb2, domain 7 TQ29_01890 PF04563 RNA polymerase beta subunit TQ29_01900 PF04997 RNA polymerase Rpb1, domain 1 TQ29_01900 PF00623 RNA polymerase Rpb1, domain 2 TQ29_01900 PF04983 RNA polymerase Rpb1, domain 3 TQ29_01900 PF05000 RNA polymerase Rpb1, domain 4 TQ29_01900 PF04998 RNA polymerase Rpb1, domain 5 TQ29_01905 PF00164 Ribosomal protein S12/S23 TQ29_01910 PF00177 Ribosomal protein S7p/S5e TQ29_01915 PF03764 Elongation factor G, domain IV TQ29_01915 PF14492 Elongation Factor G, domain II TQ29_01915 PF00009 Elongation factor Tu GTP binding domain TQ29_01915 PF00679 Elongation factor G C-terminus TQ29_01915 PF03144 Elongation factor Tu domain 2 TQ29_01920 PF00009 Elongation factor Tu GTP binding domain TQ29_01920 PF03144 Elongation factor Tu domain 2 TQ29_01920 PF03143 Elongation factor Tu C-terminal domain TQ29_01925 PF00338 Ribosomal protein S10p/S20e TQ29_01930 PF00297 Ribosomal protein L3 TQ29_01935 PF00573 Ribosomal protein L4/L1 family TQ29_01940 PF00276 Ribosomal protein L23 TQ29_01945 PF00181 Ribosomal Proteins L2, RNA binding domain TQ29_01945 PF03947 Ribosomal Proteins L2, C-terminal domain TQ29_01950 PF00203 Ribosomal protein S19 TQ29_01955 PF00237 Ribosomal protein L22p/L17e TQ29_01960 PF07650 KH domain TQ29_01960 PF00189 Ribosomal protein S3, C-terminal domain TQ29_01965 PF00252 Ribosomal protein L16p/L10e TQ29_01975 PF00831 Ribosomal L29 protein TQ29_01980 PF00366 Ribosomal protein S17 TQ29_01985 PF00238 Ribosomal protein L14p/L23e TQ29_01990 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 TQ29_01990 PF00467 KOW motif TQ29_01995 PF00673 ribosomal L5P family C-terminus TQ29_01995 PF00281 Ribosomal protein L5 TQ29_02000 PF00253 Ribosomal protein S14p/S29e TQ29_02005 PF00410 Ribosomal protein S8 TQ29_02010 PF00347 Ribosomal protein L6 TQ29_02015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast TQ29_02020 PF00333 Ribosomal protein S5, N-terminal domain TQ29_02020 PF03719 Ribosomal protein S5, C-terminal domain TQ29_02025 PF00327 Ribosomal protein L30p/L7e TQ29_02030 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A TQ29_02035 PF00344 SecY translocase TQ29_02040 PF05191 Adenylate kinase, active site lid TQ29_02045 PF00416 Ribosomal protein S13/S18 TQ29_02050 PF00411 Ribosomal protein S11 TQ29_02055 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain TQ29_02055 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain TQ29_02055 PF01000 RNA polymerase Rpb3/RpoA insert domain TQ29_02060 PF01196 Ribosomal protein L17 TQ29_02080 PF13180 PDZ domain TQ29_02085 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_02085 PF16193 AAA C-terminal domain TQ29_02085 PF12002 MgsA AAA+ ATPase C terminal TQ29_02090 PF02537 CrcB-like protein, Camphor Resistance (CrcB) TQ29_02095 PF01479 S4 domain TQ29_02095 PF00849 RNA pseudouridylate synthase TQ29_02100 PF13419 Haloacid dehalogenase-like hydrolase TQ29_02110 PF00497 Bacterial extracellular solute-binding proteins, family 3 TQ29_02115 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_02120 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_02125 PF00005 ABC transporter TQ29_02130 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_02150 PF00696 Amino acid kinase family TQ29_02155 PF01926 50S ribosome-binding GTPase TQ29_02165 PF02096 60Kd inner membrane protein TQ29_02165 PF14849 YidC periplasmic domain TQ29_02170 PF00360 Phytochrome region TQ29_02170 PF01590 GAF domain TQ29_02170 PF00563 EAL domain TQ29_02170 PF00990 Diguanylate cyclase, GGDEF domain TQ29_02175 PF01171 PP-loop family TQ29_02180 PF01809 Putative membrane protein insertion efficiency factor TQ29_02185 PF00825 Ribonuclease P TQ29_02190 PF00468 Ribosomal protein L34 TQ29_02200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TQ29_02200 PF00403 Heavy-metal-associated domain TQ29_02200 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_02205 PF00672 HAMP domain TQ29_02205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_02205 PF13426 PAS domain TQ29_02205 PF00512 His Kinase A (phospho-acceptor) domain TQ29_02225 PF01339 CheB methylesterase TQ29_02225 PF00072 Response regulator receiver domain TQ29_02230 PF01739 CheR methyltransferase, SAM binding domain TQ29_02230 PF03705 CheR methyltransferase, all-alpha domain TQ29_02230 PF08448 PAS fold TQ29_02230 PF01339 CheB methylesterase TQ29_02250 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_02250 PF00107 Zinc-binding dehydrogenase TQ29_02255 PF01370 NAD dependent epimerase/dehydratase family TQ29_02260 PF16363 GDP-mannose 4,6 dehydratase TQ29_02285 PF16363 GDP-mannose 4,6 dehydratase TQ29_02290 PF08003 Protein of unknown function (DUF1698) TQ29_02310 PF18693 TRAM domain TQ29_02310 PF00919 Uncharacterized protein family UPF0004 TQ29_02310 PF04055 Radical SAM superfamily TQ29_02330 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TQ29_02330 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TQ29_02335 PF00271 Helicase conserved C-terminal domain TQ29_02335 PF00270 DEAD/DEAH box helicase TQ29_02335 PF04408 Helicase associated domain (HA2) TQ29_02335 PF08482 ATP-dependent helicase C-terminal TQ29_02345 PF00830 Ribosomal L28 family TQ29_02360 PF01451 Low molecular weight phosphotyrosine protein phosphatase TQ29_02390 PF07729 FCD domain TQ29_02390 PF00392 Bacterial regulatory proteins, gntR family TQ29_02395 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_02395 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TQ29_02405 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TQ29_02405 PF00364 Biotin-requiring enzyme TQ29_02405 PF02817 e3 binding domain TQ29_02410 PF00676 Dehydrogenase E1 component TQ29_02410 PF02779 Transketolase, pyrimidine binding domain TQ29_02410 PF16870 2-oxoglutarate dehydrogenase C-terminal TQ29_02410 PF16078 2-oxoglutarate dehydrogenase N-terminus TQ29_02415 PF02629 CoA binding domain TQ29_02415 PF00549 CoA-ligase TQ29_02425 PF08442 ATP-grasp domain TQ29_02425 PF00549 CoA-ligase TQ29_02430 PF00056 lactate/malate dehydrogenase, NAD binding domain TQ29_02430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TQ29_02440 PF03328 HpcH/HpaI aldolase/citrate lyase family TQ29_02455 PF01575 MaoC like domain TQ29_02460 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TQ29_02465 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit TQ29_02470 PF02910 Fumarate reductase flavoprotein C-term TQ29_02470 PF00890 FAD binding domain TQ29_02475 PF13237 4Fe-4S dicluster domain TQ29_02475 PF13085 2Fe-2S iron-sulfur cluster binding domain TQ29_02490 PF00248 Aldo/keto reductase family TQ29_02495 PF01048 Phosphorylase superfamily TQ29_02500 PF00816 H-NS histone family TQ29_02505 PF01642 Methylmalonyl-CoA mutase TQ29_02505 PF02310 B12 binding domain TQ29_02510 PF00107 Zinc-binding dehydrogenase TQ29_02510 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_02530 PF01925 Sulfite exporter TauE/SafE TQ29_02535 PF02653 Branched-chain amino acid transport system / permease component TQ29_02545 PF00005 ABC transporter TQ29_02550 PF02608 ABC transporter substrate-binding protein PnrA-like TQ29_02555 PF00583 Acetyltransferase (GNAT) family TQ29_02560 PF00814 Glycoprotease family TQ29_02565 PF01106 NifU-like domain TQ29_02575 PF01063 Amino-transferase class IV TQ29_02580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TQ29_02585 PF00579 tRNA synthetases class I (W and Y) TQ29_02595 PF03023 Lipid II flippase MurJ TQ29_02600 PF01966 HD domain TQ29_02600 PF08335 GlnD PII-uridylyltransferase TQ29_02610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_02615 PF02021 Uncharacterised protein family UPF0102 TQ29_02620 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain TQ29_02620 PF02951 Prokaryotic glutathione synthetase, N-terminal domain TQ29_02625 PF07859 alpha/beta hydrolase fold TQ29_02630 PF01078 Magnesium chelatase, subunit ChlI TQ29_02630 PF13335 Magnesium chelatase, subunit ChlI C-terminal TQ29_02640 PF00140 Sigma-70 factor, region 1.2 TQ29_02640 PF04545 Sigma-70, region 4 TQ29_02640 PF04542 Sigma-70 region 2 TQ29_02650 PF02441 Flavoprotein TQ29_02650 PF04127 DNA / pantothenate metabolism flavoprotein TQ29_02655 PF00692 dUTPase TQ29_02660 PF00899 ThiF family TQ29_02665 PF01432 Peptidase family M3 TQ29_02670 PF16916 Dimerisation domain of Zinc Transporter TQ29_02670 PF01545 Cation efflux family TQ29_02680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TQ29_02680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TQ29_02690 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase TQ29_02695 PF16350 FAD dependent oxidoreductase central domain TQ29_02695 PF01266 FAD dependent oxidoreductase TQ29_02695 PF08669 Glycine cleavage T-protein C-terminal barrel domain TQ29_02695 PF01571 Aminomethyltransferase folate-binding domain TQ29_02705 PF02627 Carboxymuconolactone decarboxylase family TQ29_02710 PF02608 ABC transporter substrate-binding protein PnrA-like TQ29_02715 PF02653 Branched-chain amino acid transport system / permease component TQ29_02720 PF02653 Branched-chain amino acid transport system / permease component TQ29_02725 PF00005 ABC transporter TQ29_02735 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TQ29_02735 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TQ29_02740 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_02740 PF01799 [2Fe-2S] binding domain TQ29_02750 PF02811 PHP domain TQ29_02750 PF14579 Helix-hairpin-helix motif TQ29_02750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TQ29_02750 PF07733 Bacterial DNA polymerase III alpha NTPase domain TQ29_02765 PF13393 Histidyl-tRNA synthetase TQ29_02765 PF03129 Anticodon binding domain TQ29_02770 PF13393 Histidyl-tRNA synthetase TQ29_02775 PF01634 ATP phosphoribosyltransferase TQ29_02785 PF00317 Ribonucleotide reductase, all-alpha domain TQ29_02785 PF03477 ATP cone domain TQ29_02785 PF02867 Ribonucleotide reductase, barrel domain TQ29_02800 PF00163 Ribosomal protein S4/S9 N-terminal domain TQ29_02800 PF01479 S4 domain TQ29_02810 PF03773 Predicted permease TQ29_02815 PF03350 Uncharacterized protein family, UPF0114 TQ29_02820 PF00155 Aminotransferase class I and II TQ29_02825 PF02153 Prephenate dehydrogenase TQ29_02840 PF18395 Cas3 C-terminal domain TQ29_02840 PF18019 HD domain TQ29_02855 PF09344 CT1975-like protein TQ29_02870 PF01867 CRISPR associated protein Cas1 TQ29_02875 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) TQ29_02890 PF01266 FAD dependent oxidoreductase TQ29_02895 PF01037 Lrp/AsnC ligand binding domain TQ29_02900 PF00005 ABC transporter TQ29_02905 PF12399 Branched-chain amino acid ATP-binding cassette transporter TQ29_02905 PF00005 ABC transporter TQ29_02910 PF02653 Branched-chain amino acid transport system / permease component TQ29_02910 PF11862 Domain of unknown function (DUF3382) TQ29_02915 PF02653 Branched-chain amino acid transport system / permease component TQ29_02940 PF00355 Rieske [2Fe-2S] domain TQ29_02945 PF02653 Branched-chain amino acid transport system / permease component TQ29_02975 PF00248 Aldo/keto reductase family TQ29_02980 PF07729 FCD domain TQ29_02980 PF00392 Bacterial regulatory proteins, gntR family TQ29_02990 PF04752 ChaC-like protein TQ29_03005 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_03005 PF07724 AAA domain (Cdc48 subfamily) TQ29_03005 PF17871 AAA lid domain TQ29_03005 PF02861 Clp amino terminal domain, pathogenicity island component TQ29_03005 PF10431 C-terminal, D2-small domain, of ClpB protein TQ29_03010 PF00753 Metallo-beta-lactamase superfamily TQ29_03010 PF16123 Hydroxyacylglutathione hydrolase C-terminus TQ29_03015 PF08241 Methyltransferase domain TQ29_03020 PF00213 ATP synthase delta (OSCP) subunit TQ29_03025 PF02874 ATP synthase alpha/beta family, beta-barrel domain TQ29_03025 PF00306 ATP synthase alpha/beta chain, C terminal domain TQ29_03025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TQ29_03030 PF00231 ATP synthase TQ29_03035 PF02874 ATP synthase alpha/beta family, beta-barrel domain TQ29_03035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TQ29_03040 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TQ29_03045 PF09458 H-type lectin domain TQ29_03050 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase TQ29_03050 PF14572 Phosphoribosyl synthetase-associated domain TQ29_03060 PF01212 Beta-eliminating lyase TQ29_03065 PF03692 Putative zinc- or iron-chelating domain TQ29_03070 PF01687 Riboflavin kinase TQ29_03070 PF06574 FAD synthetase TQ29_03075 PF01575 MaoC like domain TQ29_03085 PF01368 DHH family TQ29_03085 PF02833 DHHA2 domain TQ29_03090 PF00166 Chaperonin 10 Kd subunit TQ29_03095 PF00118 TCP-1/cpn60 chaperonin family TQ29_03115 PF00892 EamA-like transporter family TQ29_03120 PF02222 ATP-grasp domain TQ29_03120 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain TQ29_03125 PF00731 AIR carboxylase TQ29_03135 PF00011 Hsp20/alpha crystallin family TQ29_03150 PF01747 ATP-sulfurylase TQ29_03150 PF14306 PUA-like domain TQ29_03155 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_03160 PF01037 Lrp/AsnC ligand binding domain TQ29_03170 PF02578 Multi-copper polyphenol oxidoreductase laccase TQ29_03180 PF01790 Prolipoprotein diacylglyceryl transferase TQ29_03200 PF09334 tRNA synthetases class I (M) TQ29_03230 PF00248 Aldo/keto reductase family TQ29_03240 PF00487 Fatty acid desaturase TQ29_03265 PF04542 Sigma-70 region 2 TQ29_03265 PF08281 Sigma-70, region 4 TQ29_03280 PF00072 Response regulator receiver domain TQ29_03280 PF00990 Diguanylate cyclase, GGDEF domain TQ29_03290 PF13419 Haloacid dehalogenase-like hydrolase TQ29_03305 PF00990 Diguanylate cyclase, GGDEF domain TQ29_03305 PF17151 Periplasmic sensor domain TQ29_03310 PF03459 TOBE domain TQ29_03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_03320 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_03325 PF03459 TOBE domain TQ29_03325 PF00005 ABC transporter TQ29_03335 PF14748 Pyrroline-5-carboxylate reductase dimerisation TQ29_03335 PF03807 NADP oxidoreductase coenzyme F420-dependent TQ29_03340 PF01588 Putative tRNA binding domain TQ29_03345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TQ29_03345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TQ29_03350 PF05532 CsbD-like TQ29_03355 PF00265 Thymidine kinase TQ29_03365 PF00270 DEAD/DEAH box helicase TQ29_03365 PF00271 Helicase conserved C-terminal domain TQ29_03370 PF02142 MGS-like domain TQ29_03370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TQ29_03370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain TQ29_03390 PF02938 GAD domain TQ29_03390 PF00152 tRNA synthetases class II (D, K and N) TQ29_03390 PF01336 OB-fold nucleic acid binding domain TQ29_03430 PF00881 Nitroreductase family TQ29_03435 PF02594 Uncharacterised ACR, YggU family COG1872 TQ29_03470 PF08274 PhnA Zinc-Ribbon TQ29_03470 PF03831 PhnA domain TQ29_03480 PF01292 Prokaryotic cytochrome b561 TQ29_03495 PF05985 Ethanolamine ammonia-lyase light chain (EutC) TQ29_03500 PF06751 Ethanolamine ammonia lyase large subunit (EutB) TQ29_03505 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_03515 PF08402 TOBE domain TQ29_03515 PF00005 ABC transporter TQ29_03525 PF00155 Aminotransferase class I and II TQ29_03525 PF00392 Bacterial regulatory proteins, gntR family TQ29_03530 PF00106 short chain dehydrogenase TQ29_03535 PF00202 Aminotransferase class-III TQ29_03540 PF05199 GMC oxidoreductase TQ29_03540 PF00732 GMC oxidoreductase TQ29_03545 PF00171 Aldehyde dehydrogenase family TQ29_03550 PF00884 Sulfatase TQ29_03550 PF12411 Choline sulfatase enzyme C terminal TQ29_03555 PF00440 Bacterial regulatory proteins, tetR family TQ29_03555 PF13977 BetI-type transcriptional repressor, C-terminal TQ29_03560 PF04069 Substrate binding domain of ABC-type glycine betaine transport system TQ29_03565 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_03570 PF00005 ABC transporter TQ29_03570 PF00571 CBS domain TQ29_03585 PF07729 FCD domain TQ29_03585 PF00392 Bacterial regulatory proteins, gntR family TQ29_03590 PF00005 ABC transporter TQ29_03590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_03595 PF00005 ABC transporter TQ29_03595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_03600 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_03605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_03615 PF00982 Glycosyltransferase family 20 TQ29_03620 PF00982 Glycosyltransferase family 20 TQ29_03620 PF05116 Sucrose-6F-phosphate phosphohydrolase TQ29_03625 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus TQ29_03625 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TQ29_03635 PF00291 Pyridoxal-phosphate dependent enzyme TQ29_03645 PF13419 Haloacid dehalogenase-like hydrolase TQ29_03650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TQ29_03665 PF00109 Beta-ketoacyl synthase, N-terminal domain TQ29_03665 PF02801 Beta-ketoacyl synthase, C-terminal domain TQ29_03670 PF07977 FabA-like domain TQ29_03675 PF01475 Ferric uptake regulator family TQ29_03690 PF01938 TRAM domain TQ29_03690 PF00919 Uncharacterized protein family UPF0004 TQ29_03690 PF04055 Radical SAM superfamily TQ29_03695 PF00691 OmpA family TQ29_03695 PF05736 OprF membrane domain TQ29_03705 PF02562 PhoH-like protein TQ29_03710 PF02130 Uncharacterized protein family UPF0054 TQ29_03715 PF00571 CBS domain TQ29_03715 PF03471 Transporter associated domain TQ29_03720 PF00795 Carbon-nitrogen hydrolase TQ29_03725 PF00438 S-adenosylmethionine synthetase, N-terminal domain TQ29_03725 PF02773 S-adenosylmethionine synthetase, C-terminal domain TQ29_03725 PF02772 S-adenosylmethionine synthetase, central domain TQ29_03730 PF14489 QueF-like protein TQ29_03735 PF02390 Putative methyltransferase TQ29_03740 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TQ29_03745 PF02224 Cytidylate kinase TQ29_03755 PF00575 S1 RNA binding domain TQ29_03760 PF00216 Bacterial DNA-binding protein TQ29_03770 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase TQ29_03780 PF00291 Pyridoxal-phosphate dependent enzyme TQ29_03810 PF01195 Peptidyl-tRNA hydrolase TQ29_03815 PF01386 Ribosomal L25p family TQ29_03815 PF14693 Ribosomal protein TL5, C-terminal domain TQ29_03835 PF01070 FMN-dependent dehydrogenase TQ29_03840 PF02535 ZIP Zinc transporter TQ29_03845 PF00583 Acetyltransferase (GNAT) family TQ29_03850 PF05099 Tellurite resistance protein TerB TQ29_03850 PF00226 DnaJ domain TQ29_03865 PF02541 Ppx/GppA phosphatase family TQ29_03870 PF02503 Polyphosphate kinase middle domain TQ29_03870 PF13090 Polyphosphate kinase C-terminal domain 2 TQ29_03870 PF17941 Polyphosphate kinase C-terminal domain 1 TQ29_03870 PF13089 Polyphosphate kinase N-terminal domain TQ29_03880 PF01594 AI-2E family transporter TQ29_03885 PF03129 Anticodon binding domain TQ29_03885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TQ29_03890 PF12704 MacB-like periplasmic core domain TQ29_03890 PF02687 FtsX-like permease family TQ29_03895 PF00005 ABC transporter TQ29_03920 PF00986 DNA gyrase B subunit, carboxyl terminus TQ29_03920 PF00204 DNA gyrase B TQ29_03920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_03920 PF01751 Toprim domain TQ29_03925 PF03976 Polyphosphate kinase 2 (PPK2) TQ29_03935 PF01554 MatE TQ29_03945 PF00155 Aminotransferase class I and II TQ29_03950 PF01381 Helix-turn-helix TQ29_03950 PF00717 Peptidase S24-like TQ29_03960 PF12802 MarR family TQ29_03970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TQ29_03985 PF02511 Thymidylate synthase complementing protein TQ29_04005 PF00313 'Cold-shock' DNA-binding domain TQ29_04010 PF03960 ArsC family TQ29_04025 PF05114 Protein of unknown function (DUF692) TQ29_04035 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TQ29_04035 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TQ29_04035 PF02824 TGS domain TQ29_04035 PF03129 Anticodon binding domain TQ29_04040 PF08264 Anticodon-binding domain of tRNA TQ29_04040 PF00133 tRNA synthetases class I (I, L, M and V) TQ29_04040 PF10458 Valyl tRNA synthetase tRNA binding arm TQ29_04065 PF02219 Methylenetetrahydrofolate reductase TQ29_04070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_04070 PF03466 LysR substrate binding domain TQ29_04075 PF00459 Inositol monophosphatase family TQ29_04110 PF14403 Circularly permuted ATP-grasp type 2 TQ29_04110 PF04168 A predicted alpha-helical domain with a conserved ER motif. TQ29_04115 PF08379 Bacterial transglutaminase-like N-terminal region TQ29_04115 PF01841 Transglutaminase-like superfamily TQ29_04130 PF00005 ABC transporter TQ29_04135 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_04140 PF07969 Amidohydrolase family TQ29_04150 PF02525 Flavodoxin-like fold TQ29_04155 PF02525 Flavodoxin-like fold TQ29_04160 PF03171 2OG-Fe(II) oxygenase superfamily TQ29_04160 PF14226 non-haem dioxygenase in morphine synthesis N-terminal TQ29_04175 PF00149 Calcineurin-like phosphoesterase TQ29_04180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TQ29_04180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TQ29_04180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TQ29_04180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TQ29_04185 PF01050 Mannose-6-phosphate isomerase TQ29_04185 PF00483 Nucleotidyl transferase TQ29_04190 PF16363 GDP-mannose 4,6 dehydratase TQ29_04195 PF03861 ANTAR domain TQ29_04195 PF08376 Nitrate and nitrite sensing TQ29_04210 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_04215 PF00005 ABC transporter TQ29_04225 PF04324 BFD-like [2Fe-2S] binding domain TQ29_04225 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TQ29_04225 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TQ29_04225 PF18267 Rubredoxin NAD+ reductase C-terminal domain TQ29_04225 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_04235 PF00384 Molybdopterin oxidoreductase TQ29_04235 PF04324 BFD-like [2Fe-2S] binding domain TQ29_04235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TQ29_04235 PF01568 Molydopterin dinucleotide binding domain TQ29_04240 PF00591 Glycosyl transferase family, a/b domain TQ29_04240 PF02885 Glycosyl transferase family, helical bundle domain TQ29_04245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_04245 PF14824 Sirohaem biosynthesis protein central TQ29_04245 PF10414 Sirohaem synthase dimerisation region TQ29_04255 PF12464 Maltose acetyltransferase TQ29_04255 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_04255 PF14602 Hexapeptide repeat of succinyl-transferase TQ29_04275 PF12697 Alpha/beta hydrolase family TQ29_04290 PF00464 Serine hydroxymethyltransferase TQ29_04295 PF01513 ATP-NAD kinase TQ29_04300 PF02954 Bacterial regulatory protein, Fis family TQ29_04300 PF00072 Response regulator receiver domain TQ29_04300 PF00158 Sigma-54 interaction domain TQ29_04305 PF00072 Response regulator receiver domain TQ29_04305 PF00989 PAS fold TQ29_04305 PF01627 Hpt domain TQ29_04305 PF00512 His Kinase A (phospho-acceptor) domain TQ29_04305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_04305 PF18415 Histidine kinase receptor ArcB trans-membrane domain TQ29_04310 PF16177 Acetyl-coenzyme A synthetase N-terminus TQ29_04310 PF00501 AMP-binding enzyme TQ29_04310 PF13193 AMP-binding enzyme C-terminal domain TQ29_04315 PF00390 Malic enzyme, N-terminal domain TQ29_04315 PF03949 Malic enzyme, NAD binding domain TQ29_04315 PF01515 Phosphate acetyl/butaryl transferase TQ29_04320 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TQ29_04325 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain TQ29_04325 PF00591 Glycosyl transferase family, a/b domain TQ29_04325 PF02885 Glycosyl transferase family, helical bundle domain TQ29_04330 PF01676 Metalloenzyme superfamily TQ29_04335 PF00962 Adenosine/AMP deaminase TQ29_04355 PF00501 AMP-binding enzyme TQ29_04355 PF13193 AMP-binding enzyme C-terminal domain TQ29_04365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TQ29_04365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TQ29_04365 PF00378 Enoyl-CoA hydratase/isomerase TQ29_04375 PF00108 Thiolase, N-terminal domain TQ29_04375 PF02803 Thiolase, C-terminal domain TQ29_04380 PF02798 Glutathione S-transferase, N-terminal domain TQ29_04390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_04390 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_04390 PF12806 Acetyl-CoA dehydrogenase C-terminal like TQ29_04390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_04395 PF09278 MerR, DNA binding TQ29_04395 PF00376 MerR family regulatory protein TQ29_04420 PF01554 MatE TQ29_04425 PF03960 ArsC family TQ29_04430 PF01180 Dihydroorotate dehydrogenase TQ29_04440 PF02872 5'-nucleotidase, C-terminal domain TQ29_04440 PF00149 Calcineurin-like phosphoesterase TQ29_04455 PF00871 Acetokinase family TQ29_04465 PF00501 AMP-binding enzyme TQ29_04465 PF13193 AMP-binding enzyme C-terminal domain TQ29_04470 PF04972 BON domain TQ29_04470 PF01476 LysM domain TQ29_04475 PF00005 ABC transporter TQ29_04475 PF00664 ABC transporter transmembrane region TQ29_04485 PF07690 Major Facilitator Superfamily TQ29_04490 PF01047 MarR family TQ29_04505 PF03109 ABC1 family TQ29_04510 PF02608 ABC transporter substrate-binding protein PnrA-like TQ29_04515 PF00005 ABC transporter TQ29_04520 PF02653 Branched-chain amino acid transport system / permease component TQ29_04525 PF02653 Branched-chain amino acid transport system / permease component TQ29_04530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_04540 PF03480 Bacterial extracellular solute-binding protein, family 7 TQ29_04545 PF00107 Zinc-binding dehydrogenase TQ29_04545 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_04555 PF00005 ABC transporter TQ29_04560 PF00005 ABC transporter TQ29_04560 PF12399 Branched-chain amino acid ATP-binding cassette transporter TQ29_04565 PF02653 Branched-chain amino acid transport system / permease component TQ29_04570 PF02653 Branched-chain amino acid transport system / permease component TQ29_04585 PF01841 Transglutaminase-like superfamily TQ29_04585 PF08379 Bacterial transglutaminase-like N-terminal region TQ29_04595 PF14403 Circularly permuted ATP-grasp type 2 TQ29_04600 PF02580 D-Tyr-tRNA(Tyr) deacylase TQ29_04605 PF00294 pfkB family carbohydrate kinase TQ29_04610 PF00011 Hsp20/alpha crystallin family TQ29_04630 PF05816 Toxic anion resistance protein (TelA) TQ29_04640 PF03741 Integral membrane protein TerC family TQ29_04645 PF00849 RNA pseudouridylate synthase TQ29_04645 PF01479 S4 domain TQ29_04650 PF14437 MafB19-like deaminase TQ29_04655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_04655 PF03466 LysR substrate binding domain TQ29_04665 PF01027 Inhibitor of apoptosis-promoting Bax1 TQ29_04670 PF04828 Glutathione-dependent formaldehyde-activating enzyme TQ29_04675 PF00471 Ribosomal protein L33 TQ29_04680 PF01510 N-acetylmuramoyl-L-alanine amidase TQ29_04690 PF01425 Amidase TQ29_04695 PF02686 Glu-tRNAGln amidotransferase C subunit TQ29_04700 PF00551 Formyl transferase TQ29_04715 PF08659 KR domain TQ29_04715 PF02801 Beta-ketoacyl synthase, C-terminal domain TQ29_04715 PF00109 Beta-ketoacyl synthase, N-terminal domain TQ29_04715 PF16197 Ketoacyl-synthetase C-terminal extension TQ29_04715 PF00698 Acyl transferase domain TQ29_04715 PF00550 Phosphopantetheine attachment site TQ29_04715 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_04715 PF14765 Polyketide synthase dehydratase TQ29_04720 PF01381 Helix-turn-helix TQ29_04725 PF00459 Inositol monophosphatase family TQ29_04730 PF01979 Amidohydrolase family TQ29_04750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TQ29_04750 PF00529 HlyD membrane-fusion protein of T1SS TQ29_04755 PF00873 AcrB/AcrD/AcrF family TQ29_04760 PF13185 GAF domain TQ29_04760 PF02954 Bacterial regulatory protein, Fis family TQ29_04760 PF00158 Sigma-54 interaction domain TQ29_04765 PF04055 Radical SAM superfamily TQ29_04765 PF02579 Dinitrogenase iron-molybdenum cofactor TQ29_04770 PF12838 4Fe-4S dicluster domain TQ29_04775 PF01816 Leucine rich repeat variant TQ29_04775 PF05484 LRV protein FeS4 cluster TQ29_04780 PF04319 NifZ domain TQ29_04800 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TQ29_04805 PF00148 Nitrogenase component 1 type Oxidoreductase TQ29_04810 PF11844 Domain of unknown function (DUF3364) TQ29_04810 PF00148 Nitrogenase component 1 type Oxidoreductase TQ29_04820 PF00148 Nitrogenase component 1 type Oxidoreductase TQ29_04825 PF02579 Dinitrogenase iron-molybdenum cofactor TQ29_04830 PF03270 Protein of unknown function, DUF269 TQ29_04835 PF05082 Rop-like TQ29_04840 PF13237 4Fe-4S dicluster domain TQ29_04845 PF04891 NifQ TQ29_04850 PF01521 Iron-sulphur cluster biosynthesis TQ29_04855 PF01106 NifU-like domain TQ29_04855 PF01592 NifU-like N terminal domain TQ29_04855 PF04324 BFD-like [2Fe-2S] binding domain TQ29_04860 PF00266 Aminotransferase class-V TQ29_04870 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_04875 PF03206 Nitrogen fixation protein NifW TQ29_04880 PF01012 Electron transfer flavoprotein domain TQ29_04885 PF01012 Electron transfer flavoprotein domain TQ29_04885 PF00766 Electron transfer flavoprotein FAD-binding domain TQ29_04905 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_04920 PF00210 Ferritin-like domain TQ29_04925 PF00309 Sigma-54 factor, Activator interacting domain (AID) TQ29_04925 PF04963 Sigma-54 factor, core binding domain TQ29_04925 PF04552 Sigma-54, DNA binding domain TQ29_04930 PF01425 Amidase TQ29_04935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_04935 PF03466 LysR substrate binding domain TQ29_04950 PF02653 Branched-chain amino acid transport system / permease component TQ29_04955 PF00795 Carbon-nitrogen hydrolase TQ29_04960 PF00857 Isochorismatase family TQ29_04965 PF00005 ABC transporter TQ29_04970 PF00857 Isochorismatase family TQ29_04980 PF00689 Cation transporting ATPase, C-terminus TQ29_04980 PF00690 Cation transporter/ATPase, N-terminus TQ29_04990 PF01266 FAD dependent oxidoreductase TQ29_04990 PF16901 C-terminal domain of alpha-glycerophosphate oxidase TQ29_05025 PF01370 NAD dependent epimerase/dehydratase family TQ29_05035 PF13649 Methyltransferase domain TQ29_05050 PF00535 Glycosyl transferase family 2 TQ29_05055 PF00535 Glycosyl transferase family 2 TQ29_05080 PF13439 Glycosyltransferase Family 4 TQ29_05080 PF00534 Glycosyl transferases group 1 TQ29_05110 PF01209 ubiE/COQ5 methyltransferase family TQ29_05115 PF16363 GDP-mannose 4,6 dehydratase TQ29_05120 PF00391 PEP-utilising enzyme, mobile domain TQ29_05120 PF01370 NAD dependent epimerase/dehydratase family TQ29_05125 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TQ29_05125 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain TQ29_05125 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain TQ29_05135 PF01593 Flavin containing amine oxidoreductase TQ29_05145 PF04030 D-arabinono-1,4-lactone oxidase TQ29_05145 PF01565 FAD binding domain TQ29_05155 PF01040 UbiA prenyltransferase family TQ29_05160 PF01416 tRNA pseudouridine synthase TQ29_05165 PF04317 YcjX-like family, DUF463 TQ29_05170 PF05128 Domain of unknown function (DUF697) TQ29_05175 PF08264 Anticodon-binding domain of tRNA TQ29_05175 PF00133 tRNA synthetases class I (I, L, M and V) TQ29_05180 PF02899 Phage integrase, N-terminal SAM-like domain TQ29_05180 PF00589 Phage integrase family TQ29_05190 PF00923 Transaldolase/Fructose-6-phosphate aldolase TQ29_05195 PF17764 3′ DNA-binding domain (3′BD) TQ29_05195 PF18319 PriA DNA helicase Cys-rich region (CRR) domain TQ29_05195 PF00270 DEAD/DEAH box helicase TQ29_05195 PF18074 Primosomal protein N C-terminal domain TQ29_05205 PF08281 Sigma-70, region 4 TQ29_05205 PF04542 Sigma-70 region 2 TQ29_05215 PF04143 Sulphur transport TQ29_05225 PF01625 Peptide methionine sulfoxide reductase TQ29_05250 PF02075 Crossover junction endodeoxyribonuclease RuvC TQ29_05255 PF01330 RuvA N terminal domain TQ29_05255 PF07499 RuvA, C-terminal domain TQ29_05260 PF05496 Holliday junction DNA helicase RuvB P-loop domain TQ29_05260 PF17864 RuvB AAA lid domain TQ29_05260 PF05491 RuvB C-terminal winged helix domain TQ29_05270 PF03061 Thioesterase superfamily TQ29_05275 PF01618 MotA/TolQ/ExbB proton channel family TQ29_05280 PF02472 Biopolymer transport protein ExbD/TolR TQ29_05290 PF04052 TolB amino-terminal domain TQ29_05290 PF07676 WD40-like Beta Propeller Repeat TQ29_05295 PF00691 OmpA family TQ29_05305 PF01171 PP-loop family TQ29_05310 PF01434 Peptidase family M41 TQ29_05310 PF06480 FtsH Extracellular TQ29_05310 PF17862 AAA+ lid domain TQ29_05310 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_05320 PF01268 Formate--tetrahydrofolate ligase TQ29_05330 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain TQ29_05330 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain TQ29_05345 PF00271 Helicase conserved C-terminal domain TQ29_05345 PF00270 DEAD/DEAH box helicase TQ29_05345 PF08494 DEAD/H associated TQ29_05385 PF00437 Type II/IV secretion system protein TQ29_05400 PF13629 Pilus formation protein N terminal region TQ29_05400 PF00263 Bacterial type II and III secretion system protein TQ29_05400 PF04972 BON domain TQ29_05430 PF01144 Coenzyme A transferase TQ29_05435 PF01144 Coenzyme A transferase TQ29_05440 PF01751 Toprim domain TQ29_05440 PF01131 DNA topoisomerase TQ29_05440 PF13368 Topoisomerase C-terminal repeat TQ29_05440 PF01396 Topoisomerase DNA binding C4 zinc finger TQ29_05445 PF17782 DprA winged helix domain TQ29_05445 PF02481 DNA recombination-mediator protein A TQ29_05450 PF01523 Putative modulator of DNA gyrase TQ29_05455 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TQ29_05455 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TQ29_05460 PF01040 UbiA prenyltransferase family TQ29_05470 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 TQ29_05475 PF00510 Cytochrome c oxidase subunit III TQ29_05480 PF02104 SURF1 family TQ29_05485 PF14821 Threonine synthase N terminus TQ29_05485 PF00291 Pyridoxal-phosphate dependent enzyme TQ29_05490 PF05193 Peptidase M16 inactive domain TQ29_05490 PF00675 Insulinase (Peptidase family M16) TQ29_05515 PF00156 Phosphoribosyl transferase domain TQ29_05520 PF01048 Phosphorylase superfamily TQ29_05525 PF01740 STAS domain TQ29_05525 PF00916 Sulfate permease family TQ29_05545 PF05524 PEP-utilising enzyme, N-terminal TQ29_05545 PF00391 PEP-utilising enzyme, mobile domain TQ29_05545 PF02896 PEP-utilising enzyme, TIM barrel domain TQ29_05550 PF00696 Amino acid kinase family TQ29_05550 PF01842 ACT domain TQ29_05550 PF13840 ACT domain TQ29_05570 PF00255 Glutathione peroxidase TQ29_05575 PF00850 Histone deacetylase domain TQ29_05590 PF00034 Cytochrome c TQ29_05590 PF03150 Di-haem cytochrome c peroxidase TQ29_05595 PF08446 PAS fold TQ29_05595 PF00512 His Kinase A (phospho-acceptor) domain TQ29_05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_05595 PF01590 GAF domain TQ29_05595 PF00360 Phytochrome region TQ29_05615 PF00510 Cytochrome c oxidase subunit III TQ29_05625 PF00067 Cytochrome P450 TQ29_05630 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_05645 PF00171 Aldehyde dehydrogenase family TQ29_05650 PF00067 Cytochrome P450 TQ29_05655 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_05655 PF14759 Reductase C-terminal TQ29_05670 PF05199 GMC oxidoreductase TQ29_05670 PF00732 GMC oxidoreductase TQ29_05675 PF00171 Aldehyde dehydrogenase family TQ29_05690 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_05695 PF07729 FCD domain TQ29_05695 PF00392 Bacterial regulatory proteins, gntR family TQ29_05705 PF07729 FCD domain TQ29_05705 PF00392 Bacterial regulatory proteins, gntR family TQ29_05710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_05710 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_05710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_05715 PF02515 CoA-transferase family III TQ29_05720 PF01593 Flavin containing amine oxidoreductase TQ29_05730 PF00970 Oxidoreductase FAD-binding domain TQ29_05730 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_05735 PF02515 CoA-transferase family III TQ29_05740 PF02515 CoA-transferase family III TQ29_05745 PF00355 Rieske [2Fe-2S] domain TQ29_05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_05775 PF03466 LysR substrate binding domain TQ29_05780 PF12146 Serine aminopeptidase, S33 TQ29_05790 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal TQ29_05790 PF00775 Dioxygenase TQ29_05795 PF00775 Dioxygenase TQ29_05800 PF05853 beta-keto acid cleavage enzyme TQ29_05805 PF00206 Lyase TQ29_05805 PF10397 Adenylosuccinate lyase C-terminus TQ29_05820 PF00313 'Cold-shock' DNA-binding domain TQ29_05835 PF00588 SpoU rRNA Methylase family TQ29_05835 PF08032 RNA 2'-O ribose methyltransferase substrate binding TQ29_05840 PF13380 CoA binding domain TQ29_05845 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase TQ29_05850 PF00977 Histidine biosynthesis protein TQ29_05855 PF00977 Histidine biosynthesis protein TQ29_05860 PF00117 Glutamine amidotransferase class-I TQ29_05870 PF00475 Imidazoleglycerol-phosphate dehydratase TQ29_05875 PF00512 His Kinase A (phospho-acceptor) domain TQ29_05875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_05875 PF00989 PAS fold TQ29_05880 PF01627 Hpt domain TQ29_05880 PF00072 Response regulator receiver domain TQ29_05880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_05880 PF00672 HAMP domain TQ29_05880 PF17149 Periplasmic sensor domain found in signal transduction proteins TQ29_05880 PF00512 His Kinase A (phospho-acceptor) domain TQ29_05885 PF16736 Single Cache-like TQ29_05885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_05885 PF00989 PAS fold TQ29_05885 PF00512 His Kinase A (phospho-acceptor) domain TQ29_05890 PF00072 Response regulator receiver domain TQ29_05890 PF00486 Transcriptional regulatory protein, C terminal TQ29_05910 PF03741 Integral membrane protein TerC family TQ29_05920 PF02436 Conserved carboxylase domain TQ29_05920 PF00682 HMGL-like TQ29_05920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TQ29_05920 PF00364 Biotin-requiring enzyme TQ29_05920 PF00289 Biotin carboxylase, N-terminal domain TQ29_05920 PF02785 Biotin carboxylase C-terminal domain TQ29_05925 PF13361 UvrD-like helicase C-terminal domain TQ29_05925 PF00580 UvrD/REP helicase N-terminal domain TQ29_05940 PF10609 NUBPL iron-transfer P-loop NTPase TQ29_05945 PF02381 MraZ protein, putative antitoxin-like TQ29_05950 PF01795 MraW methylase family TQ29_05960 PF03717 Penicillin-binding Protein dimerisation domain TQ29_05960 PF00905 Penicillin binding protein transpeptidase domain TQ29_05965 PF08245 Mur ligase middle domain TQ29_05965 PF02875 Mur ligase family, glutamate ligase domain TQ29_05965 PF01225 Mur ligase family, catalytic domain TQ29_05970 PF08245 Mur ligase middle domain TQ29_05970 PF02875 Mur ligase family, glutamate ligase domain TQ29_05970 PF01225 Mur ligase family, catalytic domain TQ29_05975 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 TQ29_05975 PF00953 Glycosyl transferase family 4 TQ29_05980 PF08245 Mur ligase middle domain TQ29_05980 PF02875 Mur ligase family, glutamate ligase domain TQ29_05985 PF00056 lactate/malate dehydrogenase, NAD binding domain TQ29_05985 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain TQ29_05990 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TQ29_05990 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TQ29_05995 PF00884 Sulfatase TQ29_06000 PF01098 Cell cycle protein TQ29_06005 PF03033 Glycosyltransferase family 28 N-terminal domain TQ29_06005 PF04101 Glycosyltransferase family 28 C-terminal domain TQ29_06010 PF08245 Mur ligase middle domain TQ29_06010 PF02875 Mur ligase family, glutamate ligase domain TQ29_06010 PF01225 Mur ligase family, catalytic domain TQ29_06015 PF13520 Amino acid permease TQ29_06035 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain TQ29_06035 PF01565 FAD binding domain TQ29_06040 PF01820 D-ala D-ala ligase N-terminus TQ29_06040 PF07478 D-ala D-ala ligase C-terminus TQ29_06045 PF03799 Cell division protein FtsQ TQ29_06055 PF12327 FtsZ family, C-terminal domain TQ29_06055 PF00091 Tubulin/FtsZ family, GTPase domain TQ29_06060 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase TQ29_06065 PF13525 Outer membrane lipoprotein TQ29_06070 PF13476 AAA domain TQ29_06070 PF02463 RecF/RecN/SMC N terminal domain TQ29_06075 PF00654 Voltage gated chloride channel TQ29_06085 PF05195 Aminopeptidase P, N-terminal domain TQ29_06085 PF00557 Metallopeptidase family M24 TQ29_06090 PF06213 Cobalamin biosynthesis protein CobT TQ29_06090 PF11775 Cobalamin biosynthesis protein CobT VWA domain TQ29_06095 PF05901 Excalibur calcium-binding domain TQ29_06095 PF00565 Staphylococcal nuclease homologue TQ29_06110 PF07728 AAA domain (dynein-related subfamily) TQ29_06110 PF08406 CbbQ/NirQ/NorQ C-terminal TQ29_06110 PF12556 Cobaltochelatase CobS subunit N terminal TQ29_06125 PF01641 SelR domain TQ29_06135 PF00226 DnaJ domain TQ29_06135 PF00684 DnaJ central domain TQ29_06135 PF01556 DnaJ C terminal domain TQ29_06140 PF01722 BolA-like protein TQ29_06150 PF02934 GatB/GatE catalytic domain TQ29_06150 PF02637 GatB domain TQ29_06165 PF01553 Acyltransferase TQ29_06170 PF17432 Domain of unknown function (DUF3458_C) ARM repeats TQ29_06170 PF11940 Domain of unknown function (DUF3458) Ig-like fold TQ29_06170 PF01433 Peptidase family M1 domain TQ29_06180 PF01274 Malate synthase TQ29_06190 PF07722 Peptidase C26 TQ29_06215 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch TQ29_06215 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TQ29_06215 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TQ29_06220 PF02233 NAD(P) transhydrogenase beta subunit TQ29_06245 PF07687 Peptidase dimerisation domain TQ29_06245 PF01546 Peptidase family M20/M25/M40 TQ29_06250 PF07687 Peptidase dimerisation domain TQ29_06250 PF01546 Peptidase family M20/M25/M40 TQ29_06255 PF00117 Glutamine amidotransferase class-I TQ29_06255 PF00958 GMP synthase C terminal domain TQ29_06255 PF02540 NAD synthase TQ29_06260 PF04055 Radical SAM superfamily TQ29_06260 PF06463 Molybdenum Cofactor Synthesis C TQ29_06275 PF01380 SIS domain TQ29_06280 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_06280 PF14602 Hexapeptide repeat of succinyl-transferase TQ29_06280 PF12804 MobA-like NTP transferase domain TQ29_06285 PF13419 Haloacid dehalogenase-like hydrolase TQ29_06290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TQ29_06305 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TQ29_06310 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit TQ29_06315 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TQ29_06325 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit TQ29_06350 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TQ29_06350 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TQ29_06350 PF10531 SLBB domain TQ29_06365 PF00384 Molybdopterin oxidoreductase TQ29_06365 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TQ29_06365 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal TQ29_06375 PF00146 NADH dehydrogenase TQ29_06380 PF12838 4Fe-4S dicluster domain TQ29_06385 PF02627 Carboxymuconolactone decarboxylase family TQ29_06390 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 TQ29_06395 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TQ29_06400 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TQ29_06400 PF00361 Proton-conducting membrane transporter TQ29_06405 PF00361 Proton-conducting membrane transporter TQ29_06410 PF00361 Proton-conducting membrane transporter TQ29_06415 PF02237 Biotin protein ligase C terminal domain TQ29_06415 PF03099 Biotin/lipoate A/B protein ligase family TQ29_06420 PF03309 Type III pantothenate kinase TQ29_06425 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain TQ29_06425 PF17770 Ribonuclease J C-terminal domain TQ29_06425 PF12706 Beta-lactamase superfamily domain TQ29_06430 PF00271 Helicase conserved C-terminal domain TQ29_06430 PF00270 DEAD/DEAH box helicase TQ29_06440 PF16658 Class II release factor RF3, C-terminal domain TQ29_06440 PF00009 Elongation factor Tu GTP binding domain TQ29_06440 PF03144 Elongation factor Tu domain 2 TQ29_06450 PF13614 AAA domain TQ29_06465 PF08402 TOBE domain TQ29_06465 PF00005 ABC transporter TQ29_06475 PF02416 mttA/Hcf106 family TQ29_06480 PF02416 mttA/Hcf106 family TQ29_06485 PF00902 Sec-independent protein translocase protein (TatC) TQ29_06505 PF01975 Survival protein SurE TQ29_06515 PF00156 Phosphoribosyl transferase domain TQ29_06515 PF13537 Glutamine amidotransferase domain TQ29_06520 PF02674 Colicin V production protein TQ29_06525 PF18073 Rubredoxin metal binding domain TQ29_06525 PF06745 KaiC TQ29_06535 PF00005 ABC transporter TQ29_06540 PF02405 Permease MlaE TQ29_06545 PF00842 Alanine racemase, C-terminal domain TQ29_06545 PF01168 Alanine racemase, N-terminal domain TQ29_06550 PF00772 DnaB-like helicase N terminal domain TQ29_06550 PF03796 DnaB-like helicase C terminal domain TQ29_06555 PF00156 Phosphoribosyl transferase domain TQ29_06560 PF01979 Amidohydrolase family TQ29_06565 PF01774 UreD urease accessory protein TQ29_06570 PF00547 Urease, gamma subunit TQ29_06575 PF00699 Urease beta subunit TQ29_06590 PF01979 Amidohydrolase family TQ29_06590 PF00449 Urease alpha-subunit, N-terminal domain TQ29_06600 PF05194 UreE urease accessory protein, C-terminal domain TQ29_06600 PF02814 UreE urease accessory protein, N-terminal domain TQ29_06605 PF01730 UreF TQ29_06610 PF02492 CobW/HypB/UreG, nucleotide-binding domain TQ29_06625 PF00398 Ribosomal RNA adenine dimethylase TQ29_06645 PF01810 LysE type translocator TQ29_06660 PF12704 MacB-like periplasmic core domain TQ29_06660 PF00005 ABC transporter TQ29_06660 PF02687 FtsX-like permease family TQ29_06665 PF12704 MacB-like periplasmic core domain TQ29_06665 PF02687 FtsX-like permease family TQ29_06665 PF00005 ABC transporter TQ29_06670 PF05198 Translation initiation factor IF-3, N-terminal domain TQ29_06670 PF00707 Translation initiation factor IF-3, C-terminal domain TQ29_06680 PF00970 Oxidoreductase FAD-binding domain TQ29_06680 PF00175 Oxidoreductase NAD-binding domain TQ29_06685 PF01037 Lrp/AsnC ligand binding domain TQ29_06710 PF17149 Periplasmic sensor domain found in signal transduction proteins TQ29_06710 PF00672 HAMP domain TQ29_06710 PF00512 His Kinase A (phospho-acceptor) domain TQ29_06710 PF01627 Hpt domain TQ29_06710 PF00072 Response regulator receiver domain TQ29_06710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_06720 PF00072 Response regulator receiver domain TQ29_06720 PF00196 Bacterial regulatory proteins, luxR family TQ29_06765 PF06276 Ferric iron reductase FhuF-like transporter TQ29_06765 PF04183 IucA / IucC family TQ29_06775 PF06276 Ferric iron reductase FhuF-like transporter TQ29_06775 PF04183 IucA / IucC family TQ29_06785 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) TQ29_06795 PF07690 Major Facilitator Superfamily TQ29_06810 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_06815 PF00497 Bacterial extracellular solute-binding proteins, family 3 TQ29_06820 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_06835 PF00355 Rieske [2Fe-2S] domain TQ29_06850 PF14226 non-haem dioxygenase in morphine synthesis N-terminal TQ29_06850 PF03171 2OG-Fe(II) oxygenase superfamily TQ29_06860 PF00231 ATP synthase TQ29_06865 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TQ29_06865 PF00306 ATP synthase alpha/beta chain, C terminal domain TQ29_06870 PF00430 ATP synthase B/B' CF(0) TQ29_06875 PF00137 ATP synthase subunit C TQ29_06880 PF12762 ISXO2-like transposase domain TQ29_06895 PF00119 ATP synthase A chain TQ29_06910 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain TQ29_06915 PF02874 ATP synthase alpha/beta family, beta-barrel domain TQ29_06915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain TQ29_06925 PF04945 YHS domain TQ29_06930 PF03009 Glycerophosphoryl diester phosphodiesterase family TQ29_06935 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_06935 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_06940 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_06945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_06945 PF00005 ABC transporter TQ29_06950 PF00005 ABC transporter TQ29_06950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_06955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_06965 PF13419 Haloacid dehalogenase-like hydrolase TQ29_06970 PF01380 SIS domain TQ29_06970 PF01418 Helix-turn-helix domain, rpiR family TQ29_06980 PF13657 HipA N-terminal domain TQ29_06980 PF07804 HipA-like C-terminal domain TQ29_06985 PF01381 Helix-turn-helix TQ29_06995 PF03050 Transposase IS66 family TQ29_06995 PF13817 IS66 C-terminal element TQ29_06995 PF13007 Transposase C of IS166 homeodomain TQ29_06995 PF13005 zinc-finger binding domain of transposase IS66 TQ29_07000 PF05717 IS66 Orf2 like protein TQ29_07005 PF01527 Transposase TQ29_07015 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_07035 PF00589 Phage integrase family TQ29_07040 PF00872 Transposase, Mutator family TQ29_07060 PF02195 ParB-like nuclease domain TQ29_07090 PF00436 Single-strand binding protein family TQ29_07150 PF01464 Transglycosylase SLT domain TQ29_07160 PF02534 Type IV secretory system Conjugative DNA transfer TQ29_07175 PF02384 N-6 DNA Methylase TQ29_07175 PF12161 HsdM N-terminal domain TQ29_07195 PF18766 SWI2/SNF2 ATPase TQ29_07195 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TQ29_07195 PF11867 Domain of unknown function (DUF3387) TQ29_07205 PF01527 Transposase TQ29_07215 PF03050 Transposase IS66 family TQ29_07215 PF13005 zinc-finger binding domain of transposase IS66 TQ29_07215 PF13817 IS66 C-terminal element TQ29_07215 PF13007 Transposase C of IS166 homeodomain TQ29_07240 PF00437 Type II/IV secretion system protein TQ29_07255 PF03135 CagE, TrbE, VirB family, component of type IV transporter system TQ29_07270 PF04610 TrbL/VirB6 plasmid conjugal transfer protein TQ29_07285 PF03743 Bacterial conjugation TrbI-like protein TQ29_07300 PF13657 HipA N-terminal domain TQ29_07300 PF07804 HipA-like C-terminal domain TQ29_07315 PF01527 Transposase TQ29_07335 PF00589 Phage integrase family TQ29_07340 PF01207 Dihydrouridine synthase (Dus) TQ29_07345 PF01925 Sulfite exporter TauE/SafE TQ29_07350 PF01593 Flavin containing amine oxidoreductase TQ29_07360 PF03652 Holliday junction resolvase TQ29_07370 PF01266 FAD dependent oxidoreductase TQ29_07380 PF08669 Glycine cleavage T-protein C-terminal barrel domain TQ29_07380 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_07380 PF17806 Sarcosine oxidase A3 domain TQ29_07380 PF01571 Aminomethyltransferase folate-binding domain TQ29_07390 PF02777 Iron/manganese superoxide dismutases, C-terminal domain TQ29_07390 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain TQ29_07395 PF00892 EamA-like transporter family TQ29_07400 PF03641 Possible lysine decarboxylase TQ29_07410 PF00005 ABC transporter TQ29_07410 PF00664 ABC transporter transmembrane region TQ29_07430 PF13360 PQQ-like domain TQ29_07435 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal TQ29_07435 PF01926 50S ribosome-binding GTPase TQ29_07440 PF00920 Dehydratase family TQ29_07450 PF10672 S-adenosylmethionine-dependent methyltransferase TQ29_07450 PF17785 PUA-like domain TQ29_07480 PF02861 Clp amino terminal domain, pathogenicity island component TQ29_07480 PF17871 AAA lid domain TQ29_07480 PF07724 AAA domain (Cdc48 subfamily) TQ29_07480 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_07480 PF10431 C-terminal, D2-small domain, of ClpB protein TQ29_07485 PF01258 Prokaryotic dksA/traR C4-type zinc finger TQ29_07490 PF01494 FAD binding domain TQ29_07495 PF00491 Arginase family TQ29_07505 PF03462 PCRF domain TQ29_07505 PF00472 RF-1 domain TQ29_07510 PF17827 PrmC N-terminal domain TQ29_07510 PF05175 Methyltransferase small domain TQ29_07520 PF00398 Ribosomal RNA adenine dimethylase TQ29_07525 PF04166 Pyridoxal phosphate biosynthetic protein PdxA TQ29_07530 PF00639 PPIC-type PPIASE domain TQ29_07530 PF09312 SurA N-terminal domain TQ29_07535 PF04453 LPS transport system D TQ29_07535 PF03968 OstA-like protein TQ29_07545 PF03739 Lipopolysaccharide export system permease LptF/LptG TQ29_07550 PF00883 Cytosol aminopeptidase family, catalytic domain TQ29_07565 PF01914 MarC family integral membrane protein TQ29_07570 PF00005 ABC transporter TQ29_07570 PF12848 ABC transporter TQ29_07575 PF00334 Nucleoside diphosphate kinase TQ29_07585 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TQ29_07585 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TQ29_07595 PF00753 Metallo-beta-lactamase superfamily TQ29_07615 PF02685 Glucokinase TQ29_07620 PF01521 Iron-sulphur cluster biosynthesis TQ29_07625 PF01966 HD domain TQ29_07625 PF13286 Phosphohydrolase-associated domain TQ29_07635 PF03485 Arginyl tRNA synthetase N terminal domain TQ29_07635 PF05746 DALR anticodon binding domain TQ29_07635 PF00750 tRNA synthetases class I (R) TQ29_07645 PF00933 Glycosyl hydrolase family 3 N terminal domain TQ29_07650 PF02616 Segregation and condensation protein ScpA TQ29_07655 PF04079 Segregation and condensation complex subunit ScpB TQ29_07665 PF00692 dUTPase TQ29_07680 PF00216 Bacterial DNA-binding protein TQ29_07685 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TQ29_07685 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TQ29_07690 PF02504 Fatty acid synthesis protein TQ29_07695 PF01783 Ribosomal L32p protein family TQ29_07710 PF01641 SelR domain TQ29_07720 PF00005 ABC transporter TQ29_07720 PF16326 ABC transporter C-terminal domain TQ29_07745 PF01406 tRNA synthetases class I (C) catalytic domain TQ29_07745 PF09190 DALR domain TQ29_07750 PF00682 HMGL-like TQ29_07750 PF08502 LeuA allosteric (dimerisation) domain TQ29_07770 PF07690 Major Facilitator Superfamily TQ29_07775 PF00730 HhH-GPD superfamily base excision DNA repair protein TQ29_07775 PF06029 AlkA N-terminal domain TQ29_07795 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain TQ29_07795 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain TQ29_07800 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase TQ29_07805 PF00342 Phosphoglucose isomerase TQ29_07830 PF02219 Methylenetetrahydrofolate reductase TQ29_07840 PF02541 Ppx/GppA phosphatase family TQ29_07845 PF01728 FtsJ-like methyltransferase TQ29_07850 PF03705 CheR methyltransferase, all-alpha domain TQ29_07850 PF01739 CheR methyltransferase, SAM binding domain TQ29_07860 PF01734 Patatin-like phospholipase TQ29_07865 PF00873 AcrB/AcrD/AcrF family TQ29_07885 PF00005 ABC transporter TQ29_07885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_07890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_07890 PF00005 ABC transporter TQ29_07895 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_07895 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_07900 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_07905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_07915 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TQ29_07920 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_07925 PF03480 Bacterial extracellular solute-binding protein, family 7 TQ29_07930 PF00291 Pyridoxal-phosphate dependent enzyme TQ29_07935 PF07687 Peptidase dimerisation domain TQ29_07935 PF01546 Peptidase family M20/M25/M40 TQ29_07940 PF00795 Carbon-nitrogen hydrolase TQ29_07955 PF00694 Aconitase C-terminal domain TQ29_07955 PF00330 Aconitase family (aconitate hydratase) TQ29_07975 PF10397 Adenylosuccinate lyase C-terminus TQ29_07975 PF00206 Lyase TQ29_08015 PF00120 Glutamine synthetase, catalytic domain TQ29_08015 PF03951 Glutamine synthetase, beta-Grasp domain TQ29_08020 PF00543 Nitrogen regulatory protein P-II TQ29_08040 PF05698 Bacterial trigger factor protein (TF) C-terminus TQ29_08040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase TQ29_08040 PF05697 Bacterial trigger factor protein (TF) TQ29_08045 PF03948 Ribosomal protein L9, C-terminal domain TQ29_08045 PF01281 Ribosomal protein L9, N-terminal domain TQ29_08050 PF01084 Ribosomal protein S18 TQ29_08055 PF01250 Ribosomal protein S6 TQ29_08075 PF00698 Acyl transferase domain TQ29_08085 PF00550 Phosphopantetheine attachment site TQ29_08090 PF02801 Beta-ketoacyl synthase, C-terminal domain TQ29_08090 PF00109 Beta-ketoacyl synthase, N-terminal domain TQ29_08095 PF02618 YceG-like family TQ29_08110 PF04860 Phage portal protein TQ29_08195 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_08195 PF06426 Serine acetyltransferase, N-terminal TQ29_08205 PF00364 Biotin-requiring enzyme TQ29_08205 PF02817 e3 binding domain TQ29_08205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) TQ29_08210 PF02780 Transketolase, C-terminal domain TQ29_08210 PF00364 Biotin-requiring enzyme TQ29_08210 PF02779 Transketolase, pyrimidine binding domain TQ29_08215 PF00676 Dehydrogenase E1 component TQ29_08220 PF04977 Septum formation initiator TQ29_08225 PF01791 DeoC/LacD family aldolase TQ29_08230 PF00162 Phosphoglycerate kinase TQ29_08235 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TQ29_08240 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD TQ29_08250 PF00579 tRNA synthetases class I (W and Y) TQ29_08255 PF03702 Anhydro-N-acetylmuramic acid kinase TQ29_08265 PF00113 Enolase, C-terminal TIM barrel domain TQ29_08265 PF03952 Enolase, N-terminal domain TQ29_08275 PF01475 Ferric uptake regulator family TQ29_08280 PF01544 CorA-like Mg2+ transporter protein TQ29_08285 PF00999 Sodium/hydrogen exchanger family TQ29_08300 PF02696 Uncharacterized ACR, YdiU/UPF0061 family TQ29_08310 PF01156 Inosine-uridine preferring nucleoside hydrolase TQ29_08315 PF13416 Bacterial extracellular solute-binding protein TQ29_08320 PF03819 MazG nucleotide pyrophosphohydrolase domain TQ29_08335 PF00072 Response regulator receiver domain TQ29_08335 PF00486 Transcriptional regulatory protein, C terminal TQ29_08340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_08340 PF00512 His Kinase A (phospho-acceptor) domain TQ29_08340 PF01627 Hpt domain TQ29_08340 PF00072 Response regulator receiver domain TQ29_08350 PF11862 Domain of unknown function (DUF3382) TQ29_08350 PF02653 Branched-chain amino acid transport system / permease component TQ29_08360 PF00005 ABC transporter TQ29_08360 PF12399 Branched-chain amino acid ATP-binding cassette transporter TQ29_08365 PF00005 ABC transporter TQ29_08370 PF03069 Acetamidase/Formamidase family TQ29_08415 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_08415 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD TQ29_08420 PF00550 Phosphopantetheine attachment site TQ29_08425 PF02801 Beta-ketoacyl synthase, C-terminal domain TQ29_08425 PF00109 Beta-ketoacyl synthase, N-terminal domain TQ29_08435 PF05872 Bacterial protein of unknown function (DUF853) TQ29_08440 PF03471 Transporter associated domain TQ29_08440 PF01595 Cyclin M transmembrane N-terminal domain TQ29_08440 PF00571 CBS domain TQ29_08445 PF02899 Phage integrase, N-terminal SAM-like domain TQ29_08445 PF00589 Phage integrase family TQ29_08455 PF01202 Shikimate kinase TQ29_08460 PF01761 3-dehydroquinate synthase TQ29_08470 PF02163 Peptidase family M50 TQ29_08470 PF00571 CBS domain TQ29_08475 PF00436 Single-strand binding protein family TQ29_08485 PF01464 Transglycosylase SLT domain TQ29_08485 PF10145 Phage-related minor tail protein TQ29_08485 PF01551 Peptidase family M23 TQ29_08490 PF03992 Antibiotic biosynthesis monooxygenase TQ29_08495 PF00892 EamA-like transporter family TQ29_08500 PF00005 ABC transporter TQ29_08500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_08505 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_08505 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_08510 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_08515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_08530 PF00696 Amino acid kinase family TQ29_08535 PF01765 Ribosome recycling factor TQ29_08540 PF01255 Putative undecaprenyl diphosphate synthase TQ29_08550 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain TQ29_08550 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase TQ29_08550 PF13288 DXP reductoisomerase C-terminal domain TQ29_08555 PF17820 PDZ domain TQ29_08555 PF02163 Peptidase family M50 TQ29_08560 PF01103 Surface antigen TQ29_08560 PF07244 Surface antigen variable number repeat TQ29_08570 PF07977 FabA-like domain TQ29_08575 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TQ29_08575 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_08580 PF06230 LpxI C-terminal domain TQ29_08580 PF17930 LpxI N-terminal domain TQ29_08585 PF02684 Lipid-A-disaccharide synthetase TQ29_08600 PF00072 Response regulator receiver domain TQ29_08600 PF00486 Transcriptional regulatory protein, C terminal TQ29_08605 PF01653 NAD-dependent DNA ligase adenylation domain TQ29_08605 PF03120 NAD-dependent DNA ligase OB-fold domain TQ29_08605 PF00533 BRCA1 C Terminus (BRCT) domain TQ29_08605 PF12826 Helix-hairpin-helix motif TQ29_08605 PF03119 NAD-dependent DNA ligase C4 zinc finger domain TQ29_08610 PF17191 RecG wedge domain TQ29_08610 PF00271 Helicase conserved C-terminal domain TQ29_08610 PF00270 DEAD/DEAH box helicase TQ29_08620 PF01502 Phosphoribosyl-AMP cyclohydrolase TQ29_08625 PF00749 tRNA synthetases class I (E and Q), catalytic domain TQ29_08630 PF01134 Glucose inhibited division protein A TQ29_08635 PF07681 DoxX TQ29_08640 PF03989 DNA gyrase C-terminal domain, beta-propeller TQ29_08640 PF00521 DNA gyrase/topoisomerase IV, subunit A TQ29_08645 PF06233 Usg-like family TQ29_08655 PF09335 SNARE associated Golgi protein TQ29_08660 PF04228 Putative neutral zinc metallopeptidase TQ29_08680 PF16350 FAD dependent oxidoreductase central domain TQ29_08680 PF01571 Aminomethyltransferase folate-binding domain TQ29_08680 PF08669 Glycine cleavage T-protein C-terminal barrel domain TQ29_08680 PF01266 FAD dependent oxidoreductase TQ29_08690 PF02653 Branched-chain amino acid transport system / permease component TQ29_08695 PF00005 ABC transporter TQ29_08700 PF12399 Branched-chain amino acid ATP-binding cassette transporter TQ29_08700 PF00005 ABC transporter TQ29_08705 PF13458 Periplasmic binding protein TQ29_08710 PF01965 DJ-1/PfpI family TQ29_08710 PF12833 Helix-turn-helix domain TQ29_08715 PF01474 Class-II DAHP synthetase family TQ29_08725 PF08340 Domain of unknown function (DUF1732) TQ29_08725 PF03755 YicC-like family, N-terminal region TQ29_08730 PF00625 Guanylate kinase TQ29_08735 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_08745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_08745 PF16736 Single Cache-like TQ29_08745 PF00512 His Kinase A (phospho-acceptor) domain TQ29_08745 PF00989 PAS fold TQ29_08755 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_08760 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_08765 PF00005 ABC transporter TQ29_08770 PF01895 PhoU domain TQ29_08775 PF00072 Response regulator receiver domain TQ29_08775 PF00486 Transcriptional regulatory protein, C terminal TQ29_08780 PF03472 Autoinducer binding domain TQ29_08780 PF00196 Bacterial regulatory proteins, luxR family TQ29_08785 PF00889 Elongation factor TS TQ29_08790 PF00318 Ribosomal protein S2 TQ29_08795 PF01467 Cytidylyltransferase-like TQ29_08795 PF00294 pfkB family carbohydrate kinase TQ29_08800 PF04227 Indigoidine synthase A like protein TQ29_08810 PF01810 LysE type translocator TQ29_08825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_08835 PF00230 Major intrinsic protein TQ29_08845 PF00501 AMP-binding enzyme TQ29_08845 PF13193 AMP-binding enzyme C-terminal domain TQ29_08855 PF07690 Major Facilitator Superfamily TQ29_08860 PF02559 CarD-like/TRCF domain TQ29_08860 PF00270 DEAD/DEAH box helicase TQ29_08860 PF00271 Helicase conserved C-terminal domain TQ29_08860 PF03461 TRCF domain TQ29_08860 PF17757 UvrB interaction domain TQ29_08870 PF00490 Delta-aminolevulinic acid dehydratase TQ29_08885 PF00067 Cytochrome P450 TQ29_08895 PF02683 Cytochrome C biogenesis protein transmembrane region TQ29_08900 PF01206 Sulfurtransferase TusA TQ29_08905 PF00575 S1 RNA binding domain TQ29_08905 PF12111 Polyribonucleotide phosphorylase C terminal TQ29_08905 PF10150 Ribonuclease E/G family TQ29_08910 PF00158 Sigma-54 interaction domain TQ29_08910 PF00072 Response regulator receiver domain TQ29_08910 PF02954 Bacterial regulatory protein, Fis family TQ29_08915 PF00512 His Kinase A (phospho-acceptor) domain TQ29_08915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_08915 PF02743 Cache domain TQ29_08925 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase TQ29_08940 PF01259 SAICAR synthetase TQ29_08955 PF02574 Homocysteine S-methyltransferase TQ29_08955 PF00809 Pterin binding enzyme TQ29_08955 PF02965 Vitamin B12 dependent methionine synthase, activation domain TQ29_08955 PF02607 B12 binding domain TQ29_08955 PF02310 B12 binding domain TQ29_08960 PF04055 Radical SAM superfamily TQ29_08965 PF02310 B12 binding domain TQ29_08965 PF02607 B12 binding domain TQ29_08975 PF16360 GTP-binding GTPase Middle Region TQ29_08975 PF13167 GTP-binding GTPase N-terminal TQ29_08975 PF01926 50S ribosome-binding GTPase TQ29_08980 PF17209 Hfq protein TQ29_08990 PF02254 TrkA-N domain TQ29_08990 PF02080 TrkA-C domain TQ29_08995 PF00072 Response regulator receiver domain TQ29_08995 PF00158 Sigma-54 interaction domain TQ29_08995 PF02954 Bacterial regulatory protein, Fis family TQ29_09000 PF00672 HAMP domain TQ29_09000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_09000 PF00989 PAS fold TQ29_09000 PF00512 His Kinase A (phospho-acceptor) domain TQ29_09005 PF00072 Response regulator receiver domain TQ29_09005 PF02954 Bacterial regulatory protein, Fis family TQ29_09005 PF14532 Sigma-54 interaction domain TQ29_09010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_09010 PF00512 His Kinase A (phospho-acceptor) domain TQ29_09015 PF01207 Dihydrouridine synthase (Dus) TQ29_09020 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase TQ29_09020 PF02542 YgbB family TQ29_09030 PF00994 Probable molybdopterin binding domain TQ29_09030 PF02464 Competence-damaged protein TQ29_09030 PF18146 Damage-inducible protein CinA KH domain TQ29_09035 PF03364 Polyketide cyclase / dehydrase and lipid transport TQ29_09040 PF00156 Phosphoribosyl transferase domain TQ29_09045 PF03466 LysR substrate binding domain TQ29_09045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_09050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_09050 PF00005 ABC transporter TQ29_09055 PF00005 ABC transporter TQ29_09055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_09060 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_09060 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_09065 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_09070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_09075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain TQ29_09075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain TQ29_09080 PF00890 FAD binding domain TQ29_09080 PF02910 Fumarate reductase flavoprotein C-term TQ29_09085 PF02445 Quinolinate synthetase A protein TQ29_09090 PF00211 Adenylate and Guanylate cyclase catalytic domain TQ29_09095 PF00072 Response regulator receiver domain TQ29_09100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_09100 PF00989 PAS fold TQ29_09100 PF00512 His Kinase A (phospho-acceptor) domain TQ29_09110 PF00027 Cyclic nucleotide-binding domain TQ29_09110 PF04960 Glutaminase TQ29_09110 PF01740 STAS domain TQ29_09120 PF10503 Esterase PHB depolymerase TQ29_09135 PF15887 Putative zinc-binding metallo-peptidase TQ29_09135 PF10005 zinc-ribbon domain TQ29_09140 PF00199 Catalase TQ29_09140 PF18011 C-terminal domain found in long catalases TQ29_09140 PF06628 Catalase-related immune-responsive TQ29_09150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TQ29_09150 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_09160 PF00266 Aminotransferase class-V TQ29_09175 PF01458 Uncharacterized protein family (UPF0051) TQ29_09180 PF00005 ABC transporter TQ29_09190 PF01906 Putative heavy-metal-binding TQ29_09195 PF01458 Uncharacterized protein family (UPF0051) TQ29_09200 PF00266 Aminotransferase class-V TQ29_09205 PF02082 Transcriptional regulator TQ29_09210 PF02129 X-Pro dipeptidyl-peptidase (S15 family) TQ29_09220 PF00180 Isocitrate/isopropylmalate dehydrogenase TQ29_09235 PF00893 Small Multidrug Resistance protein TQ29_09240 PF00679 Elongation factor G C-terminus TQ29_09240 PF00009 Elongation factor Tu GTP binding domain TQ29_09240 PF03144 Elongation factor Tu domain 2 TQ29_09250 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal TQ29_09250 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III TQ29_09260 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain TQ29_09260 PF02272 DHHA1 domain TQ29_09260 PF01411 tRNA synthetases class II (A) TQ29_09265 PF00154 recA bacterial DNA recombination protein TQ29_09280 PF01189 16S rRNA methyltransferase RsmB/F TQ29_09280 PF01029 NusB family TQ29_09285 PF00571 CBS domain TQ29_09285 PF00478 IMP dehydrogenase / GMP reductase domain TQ29_09295 PF01220 Dehydroquinase class II TQ29_09300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_09300 PF03466 LysR substrate binding domain TQ29_09305 PF01322 Cytochrome C' TQ29_09310 PF00034 Cytochrome c TQ29_09315 PF04055 Radical SAM superfamily TQ29_09315 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family TQ29_09320 PF08534 Redoxin TQ29_09325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_09325 PF03466 LysR substrate binding domain TQ29_09330 PF00199 Catalase TQ29_09330 PF06628 Catalase-related immune-responsive TQ29_09360 PF00117 Glutamine amidotransferase class-I TQ29_09360 PF00958 GMP synthase C terminal domain TQ29_09375 PF04204 Homoserine O-succinyltransferase TQ29_09380 PF03976 Polyphosphate kinase 2 (PPK2) TQ29_09400 PF00380 Ribosomal protein S9/S16 TQ29_09405 PF00572 Ribosomal protein L13 TQ29_09410 PF00155 Aminotransferase class I and II TQ29_09410 PF00392 Bacterial regulatory proteins, gntR family TQ29_09425 PF02675 S-adenosylmethionine decarboxylase TQ29_09430 PF17284 Spermidine synthase tetramerisation domain TQ29_09440 PF00378 Enoyl-CoA hydratase/isomerase TQ29_09450 PF02074 Carboxypeptidase Taq (M32) metallopeptidase TQ29_09455 PF02628 Cytochrome oxidase assembly protein TQ29_09485 PF10090 Histidine phosphotransferase C-terminal domain TQ29_09490 PF00171 Aldehyde dehydrogenase family TQ29_09495 PF00696 Amino acid kinase family TQ29_09495 PF01472 PUA domain TQ29_09500 PF01926 50S ribosome-binding GTPase TQ29_09500 PF01018 GTP1/OBG TQ29_09510 PF01016 Ribosomal L27 protein TQ29_09515 PF00829 Ribosomal prokaryotic L21 protein TQ29_09530 PF04542 Sigma-70 region 2 TQ29_09530 PF08281 Sigma-70, region 4 TQ29_09540 PF00753 Metallo-beta-lactamase superfamily TQ29_09540 PF04273 Putative phosphatase (DUF442) TQ29_09545 PF00210 Ferritin-like domain TQ29_09550 PF10417 C-terminal domain of 1-Cys peroxiredoxin TQ29_09550 PF00578 AhpC/TSA family TQ29_09560 PF00005 ABC transporter TQ29_09560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_09565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_09565 PF00005 ABC transporter TQ29_09570 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_09570 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_09575 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_09580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_09585 PF01244 Membrane dipeptidase (Peptidase family M19) TQ29_09590 PF00202 Aminotransferase class-III TQ29_09595 PF00171 Aldehyde dehydrogenase family TQ29_09600 PF01037 Lrp/AsnC ligand binding domain TQ29_09610 PF03480 Bacterial extracellular solute-binding protein, family 7 TQ29_09615 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TQ29_09620 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_09625 PF00582 Universal stress protein family TQ29_09635 PF00291 Pyridoxal-phosphate dependent enzyme TQ29_09640 PF02423 Ornithine cyclodeaminase/mu-crystallin family TQ29_09645 PF01321 Creatinase/Prolidase N-terminal domain TQ29_09645 PF00557 Metallopeptidase family M24 TQ29_09650 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family TQ29_09660 PF13632 Glycosyl transferase family group 2 TQ29_09670 PF04349 Periplasmic glucan biosynthesis protein, MdoG TQ29_09685 PF01047 MarR family TQ29_09690 PF02566 OsmC-like protein TQ29_09695 PF01979 Amidohydrolase family TQ29_09695 PF13382 Adenine deaminase C-terminal domain TQ29_09710 PF08543 Phosphomethylpyrimidine kinase TQ29_09715 PF01266 FAD dependent oxidoreductase TQ29_09725 PF05690 Thiazole biosynthesis protein ThiG TQ29_09730 PF02581 Thiamine monophosphate synthase TQ29_09735 PF00899 ThiF family TQ29_09740 PF09084 NMT1/THI5 like TQ29_09745 PF03070 TENA/THI-4/PQQC family TQ29_09750 PF00005 ABC transporter TQ29_09755 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_09790 PF13533 Biotin-lipoyl like TQ29_09795 PF00005 ABC transporter TQ29_09825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TQ29_09840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_09850 PF00455 DeoR C terminal sensor domain TQ29_09850 PF08220 DeoR-like helix-turn-helix domain TQ29_09865 PF00370 FGGY family of carbohydrate kinases, N-terminal domain TQ29_09865 PF02782 FGGY family of carbohydrate kinases, C-terminal domain TQ29_09870 PF00483 Nucleotidyl transferase TQ29_09880 PF08421 Putative zinc binding domain TQ29_09880 PF08484 C-methyltransferase C-terminal domain TQ29_09885 PF01370 NAD dependent epimerase/dehydratase family TQ29_09915 PF12344 Ultra-violet resistance protein B TQ29_09915 PF17757 UvrB interaction domain TQ29_09915 PF00271 Helicase conserved C-terminal domain TQ29_09915 PF04851 Type III restriction enzyme, res subunit TQ29_09915 PF02151 UvrB/uvrC motif TQ29_09930 PF00582 Universal stress protein family TQ29_09935 PF13614 AAA domain TQ29_09955 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) TQ29_09955 PF12708 Pectate lyase superfamily protein TQ29_09965 PF01921 tRNA synthetases class I (K) TQ29_09980 PF01467 Cytidylyltransferase-like TQ29_09995 PF00005 ABC transporter TQ29_09995 PF12848 ABC transporter TQ29_10005 PF00085 Thioredoxin TQ29_10015 PF02347 Glycine cleavage system P-protein TQ29_10025 PF01597 Glycine cleavage H-protein TQ29_10030 PF01571 Aminomethyltransferase folate-binding domain TQ29_10030 PF08669 Glycine cleavage T-protein C-terminal barrel domain TQ29_10040 PF00749 tRNA synthetases class I (E and Q), catalytic domain TQ29_10045 PF12706 Beta-lactamase superfamily domain TQ29_10050 PF00294 pfkB family carbohydrate kinase TQ29_10055 PF03358 NADPH-dependent FMN reductase TQ29_10060 PF02540 NAD synthase TQ29_10060 PF00795 Carbon-nitrogen hydrolase TQ29_10070 PF00682 HMGL-like TQ29_10070 PF08502 LeuA allosteric (dimerisation) domain TQ29_10080 PF04085 rod shape-determining protein MreC TQ29_10090 PF03717 Penicillin-binding Protein dimerisation domain TQ29_10090 PF00905 Penicillin binding protein transpeptidase domain TQ29_10095 PF01098 Cell cycle protein TQ29_10100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TQ29_10110 PF03167 Uracil DNA glycosylase superfamily TQ29_10125 PF06965 Na+/H+ antiporter 1 TQ29_10130 PF00005 ABC transporter TQ29_10140 PF00793 DAHP synthetase I family TQ29_10160 PF00665 Integrase core domain TQ29_10165 PF07687 Peptidase dimerisation domain TQ29_10165 PF01546 Peptidase family M20/M25/M40 TQ29_10175 PF00005 ABC transporter TQ29_10175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_10180 PF00005 ABC transporter TQ29_10180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_10185 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_10185 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_10190 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_10195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_10205 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TQ29_10205 PF13378 Enolase C-terminal domain-like TQ29_10210 PF01425 Amidase TQ29_10220 PF00005 ABC transporter TQ29_10225 PF00005 ABC transporter TQ29_10235 PF02653 Branched-chain amino acid transport system / permease component TQ29_10240 PF13458 Periplasmic binding protein TQ29_10255 PF00356 Bacterial regulatory proteins, lacI family TQ29_10265 PF00005 ABC transporter TQ29_10265 PF17912 MalK OB fold domain TQ29_10270 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_10275 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_10285 PF00583 Acetyltransferase (GNAT) family TQ29_10305 PF01527 Transposase TQ29_10325 PF02028 BCCT, betaine/carnitine/choline family transporter TQ29_10330 PF00582 Universal stress protein family TQ29_10340 PF06339 Ectoine synthase TQ29_10345 PF00202 Aminotransferase class-III TQ29_10350 PF00583 Acetyltransferase (GNAT) family TQ29_10355 PF01047 MarR family TQ29_10360 PF00795 Carbon-nitrogen hydrolase TQ29_10365 PF13537 Glutamine amidotransferase domain TQ29_10365 PF00733 Asparagine synthase TQ29_10370 PF08534 Redoxin TQ29_10380 PF01578 Cytochrome C assembly protein TQ29_10385 PF03379 CcmB protein TQ29_10390 PF00005 ABC transporter TQ29_10395 PF04430 Protein of unknown function (DUF498/DUF598) TQ29_10405 PF07549 SecD/SecF GG Motif TQ29_10405 PF02355 Protein export membrane protein TQ29_10410 PF02355 Protein export membrane protein TQ29_10415 PF02699 Preprotein translocase subunit TQ29_10425 PF02403 Seryl-tRNA synthetase N-terminal domain TQ29_10425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) TQ29_10435 PF01081 KDPG and KHG aldolase TQ29_10445 PF08335 GlnD PII-uridylyltransferase TQ29_10445 PF03710 Glutamate-ammonia ligase adenylyltransferase TQ29_10465 PF04377 Arginine-tRNA-protein transferase, C terminus TQ29_10465 PF04376 Arginine-tRNA-protein transferase, N terminus TQ29_10470 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_10480 PF03480 Bacterial extracellular solute-binding protein, family 7 TQ29_10485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TQ29_10485 PF00205 Thiamine pyrophosphate enzyme, central domain TQ29_10485 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TQ29_10490 PF10369 Small subunit of acetolactate synthase TQ29_10505 PF02678 Pirin TQ29_10505 PF05726 Pirin C-terminal cupin domain TQ29_10515 PF08471 Class II vitamin B12-dependent ribonucleotide reductase TQ29_10515 PF02867 Ribonucleotide reductase, barrel domain TQ29_10530 PF00313 'Cold-shock' DNA-binding domain TQ29_10535 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region TQ29_10535 PF01243 Pyridoxamine 5'-phosphate oxidase TQ29_10545 PF00156 Phosphoribosyl transferase domain TQ29_10555 PF00155 Aminotransferase class I and II TQ29_10565 PF04715 Anthranilate synthase component I, N terminal region TQ29_10565 PF00425 chorismate binding enzyme TQ29_10570 PF03062 MBOAT, membrane-bound O-acyltransferase family TQ29_10585 PF00117 Glutamine amidotransferase class-I TQ29_10590 PF00591 Glycosyl transferase family, a/b domain TQ29_10590 PF02885 Glycosyl transferase family, helical bundle domain TQ29_10600 PF01047 MarR family TQ29_10605 PF00218 Indole-3-glycerol phosphate synthase TQ29_10610 PF01967 MoaC family TQ29_10615 PF03453 MoeA N-terminal region (domain I and II) TQ29_10615 PF03454 MoeA C-terminal region (domain IV) TQ29_10615 PF00994 Probable molybdopterin binding domain TQ29_10620 PF01726 LexA DNA binding domain TQ29_10620 PF00717 Peptidase S24-like TQ29_10625 PF03772 Competence protein TQ29_10625 PF13567 Domain of unknown function (DUF4131) TQ29_10625 PF00753 Metallo-beta-lactamase superfamily TQ29_10630 PF00749 tRNA synthetases class I (E and Q), catalytic domain TQ29_10635 PF00285 Citrate synthase, C-terminal domain TQ29_10640 PF00005 ABC transporter TQ29_10645 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_10650 PF01979 Amidohydrolase family TQ29_10675 PF00378 Enoyl-CoA hydratase/isomerase TQ29_10680 PF03918 Cytochrome C biogenesis protein TQ29_10685 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TQ29_10685 PF01578 Cytochrome C assembly protein TQ29_10700 PF03100 CcmE TQ29_10705 PF02774 Semialdehyde dehydrogenase, dimerisation domain TQ29_10705 PF01118 Semialdehyde dehydrogenase, NAD binding domain TQ29_10710 PF01177 Asp/Glu/Hydantoin racemase TQ29_10720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_10720 PF03466 LysR substrate binding domain TQ29_10725 PF00586 AIR synthase related protein, N-terminal domain TQ29_10725 PF02769 AIR synthase related protein, C-terminal domain TQ29_10725 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain TQ29_10735 PF00462 Glutaredoxin TQ29_10750 PF02780 Transketolase, C-terminal domain TQ29_10750 PF02779 Transketolase, pyrimidine binding domain TQ29_10750 PF00456 Transketolase, thiamine diphosphate binding domain TQ29_10765 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TQ29_10765 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TQ29_10775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TQ29_10775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TQ29_10785 PF01467 Cytidylyltransferase-like TQ29_10790 PF00571 CBS domain TQ29_10790 PF00478 IMP dehydrogenase / GMP reductase domain TQ29_10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_10795 PF03466 LysR substrate binding domain TQ29_10800 PF00171 Aldehyde dehydrogenase family TQ29_10805 PF04107 Glutamate-cysteine ligase family 2(GCS2) TQ29_10810 PF03734 L,D-transpeptidase catalytic domain TQ29_10825 PF17755 UvrA DNA-binding domain TQ29_10825 PF17760 UvrA interaction domain TQ29_10845 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_10845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TQ29_10855 PF07690 Major Facilitator Superfamily TQ29_10860 PF02547 Queuosine biosynthesis protein TQ29_10870 PF00578 AhpC/TSA family TQ29_10875 PF04305 Protein of unknown function (DUF455) TQ29_10880 PF01476 LysM domain TQ29_10880 PF08525 Opacity-associated protein A N-terminal motif TQ29_10880 PF01551 Peptidase family M23 TQ29_10895 PF00472 RF-1 domain TQ29_10895 PF03462 PCRF domain TQ29_10900 PF00912 Transglycosylase TQ29_10900 PF00905 Penicillin binding protein transpeptidase domain TQ29_10900 PF17092 Penicillin-binding protein OB-like domain TQ29_10910 PF01520 N-acetylmuramoyl-L-alanine amidase TQ29_10915 PF00155 Aminotransferase class I and II TQ29_10930 PF04551 GcpE protein TQ29_10940 PF00155 Aminotransferase class I and II TQ29_10950 PF16655 PhoD-like phosphatase, N-terminal domain TQ29_10950 PF09423 PhoD-like phosphatase TQ29_10970 PF05726 Pirin C-terminal cupin domain TQ29_10970 PF02678 Pirin TQ29_10975 PF01979 Amidohydrolase family TQ29_10975 PF13382 Adenine deaminase C-terminal domain TQ29_10995 PF00216 Bacterial DNA-binding protein TQ29_11000 PF05362 Lon protease (S16) C-terminal proteolytic domain TQ29_11000 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_11000 PF02190 ATP-dependent protease La (LON) substrate-binding domain TQ29_11010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TQ29_11015 PF01702 Queuine tRNA-ribosyltransferase TQ29_11020 PF18030 RimK PreATP-grasp domain TQ29_11020 PF08443 RimK-like ATP-grasp domain TQ29_11025 PF01883 Iron-sulfur cluster assembly protein TQ29_11040 PF01521 Iron-sulphur cluster biosynthesis TQ29_11050 PF00121 Triosephosphate isomerase TQ29_11055 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_11060 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component TQ29_11065 PF03480 Bacterial extracellular solute-binding protein, family 7 TQ29_11070 PF00072 Response regulator receiver domain TQ29_11070 PF00158 Sigma-54 interaction domain TQ29_11070 PF02954 Bacterial regulatory protein, Fis family TQ29_11075 PF02743 Cache domain TQ29_11075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_11075 PF00512 His Kinase A (phospho-acceptor) domain TQ29_11080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_11090 PF00037 4Fe-4S binding domain TQ29_11090 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region TQ29_11090 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit TQ29_11095 PF01568 Molydopterin dinucleotide binding domain TQ29_11095 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region TQ29_11095 PF04879 Molybdopterin oxidoreductase Fe4S4 domain TQ29_11095 PF12838 4Fe-4S dicluster domain TQ29_11095 PF00384 Molybdopterin oxidoreductase TQ29_11100 PF02634 FdhD/NarQ family TQ29_11115 PF01618 MotA/TolQ/ExbB proton channel family TQ29_11120 PF00005 ABC transporter TQ29_11125 PF01032 FecCD transport family TQ29_11135 PF00593 TonB dependent receptor TQ29_11135 PF07715 TonB-dependent Receptor Plug Domain TQ29_11140 PF07969 Amidohydrolase family TQ29_11145 PF06007 Phosphonate metabolism protein PhnJ TQ29_11155 PF05861 Bacterial phosphonate metabolism protein (PhnI) TQ29_11160 PF06754 Phosphonate metabolism protein PhnG TQ29_11170 PF01979 Amidohydrolase family TQ29_11170 PF13382 Adenine deaminase C-terminal domain TQ29_11175 PF08241 Methyltransferase domain TQ29_11180 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_11185 PF00005 ABC transporter TQ29_11195 PF00005 ABC transporter TQ29_11205 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_11210 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_11215 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_11230 PF00376 MerR family regulatory protein TQ29_11230 PF09278 MerR, DNA binding TQ29_11240 PF03466 LysR substrate binding domain TQ29_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_11245 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain TQ29_11250 PF00485 Phosphoribulokinase / Uridine kinase family TQ29_11255 PF02779 Transketolase, pyrimidine binding domain TQ29_11255 PF02780 Transketolase, C-terminal domain TQ29_11255 PF00456 Transketolase, thiamine diphosphate binding domain TQ29_11260 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain TQ29_11260 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain TQ29_11265 PF00162 Phosphoglycerate kinase TQ29_11270 PF01116 Fructose-bisphosphate aldolase class-II TQ29_11275 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain TQ29_11275 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain TQ29_11280 PF00101 Ribulose bisphosphate carboxylase, small chain TQ29_11285 PF17866 AAA lid domain TQ29_11285 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_11290 PF00834 Ribulose-phosphate 3 epimerase family TQ29_11305 PF13419 Haloacid dehalogenase-like hydrolase TQ29_11320 PF07969 Amidohydrolase family TQ29_11325 PF06299 Protein of unknown function (DUF1045) TQ29_11330 PF00625 Guanylate kinase TQ29_11335 PF00005 ABC transporter TQ29_11340 PF01544 CorA-like Mg2+ transporter protein TQ29_11345 PF00005 ABC transporter TQ29_11350 PF06007 Phosphonate metabolism protein PhnJ TQ29_11355 PF05861 Bacterial phosphonate metabolism protein (PhnI) TQ29_11360 PF05845 Bacterial phosphonate metabolism protein (PhnH) TQ29_11365 PF06754 Phosphonate metabolism protein PhnG TQ29_11370 PF00392 Bacterial regulatory proteins, gntR family TQ29_11370 PF07702 UTRA domain TQ29_11375 PF07969 Amidohydrolase family TQ29_11385 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_11390 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_11395 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_11405 PF00005 ABC transporter TQ29_11410 PF01613 Flavin reductase like domain TQ29_11420 PF00034 Cytochrome c TQ29_11430 PF02872 5'-nucleotidase, C-terminal domain TQ29_11430 PF00149 Calcineurin-like phosphoesterase TQ29_11460 PF02683 Cytochrome C biogenesis protein transmembrane region TQ29_11470 PF01022 Bacterial regulatory protein, arsR family TQ29_11480 PF07969 Amidohydrolase family TQ29_11485 PF02653 Branched-chain amino acid transport system / permease component TQ29_11490 PF02653 Branched-chain amino acid transport system / permease component TQ29_11495 PF00005 ABC transporter TQ29_11515 PF07943 Penicillin-binding protein 5, C-terminal domain TQ29_11515 PF00768 D-alanyl-D-alanine carboxypeptidase TQ29_11520 PF02223 Thymidylate kinase TQ29_11525 PF09115 DNA polymerase III, delta subunit, C terminal TQ29_11530 PF01026 TatD related DNase TQ29_11535 PF00753 Metallo-beta-lactamase superfamily TQ29_11555 PF01370 NAD dependent epimerase/dehydratase family TQ29_11585 PF02811 PHP domain TQ29_11585 PF01336 OB-fold nucleic acid binding domain TQ29_11585 PF14579 Helix-hairpin-helix motif TQ29_11585 PF07733 Bacterial DNA polymerase III alpha NTPase domain TQ29_11585 PF17657 Bacterial DNA polymerase III alpha subunit finger domain TQ29_11605 PF03069 Acetamidase/Formamidase family TQ29_11620 PF09084 NMT1/THI5 like TQ29_11625 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal TQ29_11625 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal TQ29_11630 PF01425 Amidase TQ29_11650 PF00248 Aldo/keto reductase family TQ29_11655 PF00724 NADH:flavin oxidoreductase / NADH oxidase family TQ29_11660 PF09084 NMT1/THI5 like TQ29_11665 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_11675 PF00005 ABC transporter TQ29_11680 PF00171 Aldehyde dehydrogenase family TQ29_11685 PF00202 Aminotransferase class-III TQ29_11690 PF01979 Amidohydrolase family TQ29_11695 PF12852 Cupin TQ29_11695 PF12833 Helix-turn-helix domain TQ29_11700 PF02492 CobW/HypB/UreG, nucleotide-binding domain TQ29_11700 PF07683 Cobalamin synthesis protein cobW C-terminal domain TQ29_11710 PF01522 Polysaccharide deacetylase TQ29_11715 PF00710 Asparaginase, N-terminal TQ29_11715 PF17763 Glutaminase/Asparaginase C-terminal domain TQ29_11730 PF03006 Haemolysin-III related TQ29_11745 PF03099 Biotin/lipoate A/B protein ligase family TQ29_11750 PF00115 Cytochrome C and Quinol oxidase polypeptide I TQ29_11765 PF09424 Yqey-like protein TQ29_11770 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain TQ29_11770 PF00117 Glutamine amidotransferase class-I TQ29_11780 PF00392 Bacterial regulatory proteins, gntR family TQ29_11780 PF07729 FCD domain TQ29_11795 PF01494 FAD binding domain TQ29_11805 PF01037 Lrp/AsnC ligand binding domain TQ29_11805 PF13404 AsnC-type helix-turn-helix domain TQ29_11810 PF01037 Lrp/AsnC ligand binding domain TQ29_11815 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain TQ29_11815 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain TQ29_11825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TQ29_11825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TQ29_11825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TQ29_11825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TQ29_11830 PF01471 Putative peptidoglycan binding domain TQ29_11830 PF07486 Cell Wall Hydrolase TQ29_11835 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TQ29_11835 PF00391 PEP-utilising enzyme, mobile domain TQ29_11835 PF02896 PEP-utilising enzyme, TIM barrel domain TQ29_11840 PF02092 Glycyl-tRNA synthetase beta subunit TQ29_11840 PF05746 DALR anticodon binding domain TQ29_11850 PF02091 Glycyl-tRNA synthetase alpha subunit TQ29_11860 PF02386 Cation transport protein TQ29_11870 PF01047 MarR family TQ29_11875 PF01053 Cys/Met metabolism PLP-dependent enzyme TQ29_11885 PF02798 Glutathione S-transferase, N-terminal domain TQ29_11885 PF00043 Glutathione S-transferase, C-terminal domain TQ29_11890 PF04279 Intracellular septation protein A TQ29_11900 PF02308 MgtC family TQ29_11910 PF00448 SRP54-type protein, GTPase domain TQ29_11910 PF02881 SRP54-type protein, helical bundle domain TQ29_11915 PF00487 Fatty acid desaturase TQ29_11925 PF13742 OB-fold nucleic acid binding domain TQ29_11925 PF02601 Exonuclease VII, large subunit TQ29_11930 PF02843 Phosphoribosylglycinamide synthetase, C domain TQ29_11930 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain TQ29_11930 PF02844 Phosphoribosylglycinamide synthetase, N domain TQ29_11935 PF00171 Aldehyde dehydrogenase family TQ29_11940 PF00202 Aminotransferase class-III TQ29_11945 PF07729 FCD domain TQ29_11945 PF00392 Bacterial regulatory proteins, gntR family TQ29_11950 PF13416 Bacterial extracellular solute-binding protein TQ29_11955 PF00005 ABC transporter TQ29_11955 PF08402 TOBE domain TQ29_11960 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_11965 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_11980 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_11990 PF13180 PDZ domain TQ29_12000 PF01145 SPFH domain / Band 7 family TQ29_12005 PF01145 SPFH domain / Band 7 family TQ29_12010 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_12010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain TQ29_12015 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) TQ29_12035 PF00709 Adenylosuccinate synthetase TQ29_12050 PF06418 CTP synthase N-terminus TQ29_12050 PF00117 Glutamine amidotransferase class-I TQ29_12070 PF00005 ABC transporter TQ29_12075 PF00497 Bacterial extracellular solute-binding proteins, family 3 TQ29_12080 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_12085 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_12090 PF00120 Glutamine synthetase, catalytic domain TQ29_12095 PF02540 NAD synthase TQ29_12095 PF00958 GMP synthase C terminal domain TQ29_12095 PF00117 Glutamine amidotransferase class-I TQ29_12100 PF00120 Glutamine synthetase, catalytic domain TQ29_12105 PF01266 FAD dependent oxidoreductase TQ29_12110 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family TQ29_12115 PF03466 LysR substrate binding domain TQ29_12115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_12130 PF00561 alpha/beta hydrolase fold TQ29_12130 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus TQ29_12160 PF00266 Aminotransferase class-V TQ29_12170 PF00005 ABC transporter TQ29_12170 PF00664 ABC transporter transmembrane region TQ29_12175 PF01571 Aminomethyltransferase folate-binding domain TQ29_12190 PF09285 Elongation factor P, C-terminal TQ29_12190 PF08207 Elongation factor P (EF-P) KOW-like domain TQ29_12190 PF01132 Elongation factor P (EF-P) OB domain TQ29_12205 PF02321 Outer membrane efflux protein TQ29_12235 PF01695 IstB-like ATP binding protein TQ29_12245 PF00145 C-5 cytosine-specific DNA methylase TQ29_12260 PF00291 Pyridoxal-phosphate dependent enzyme TQ29_12260 PF00571 CBS domain TQ29_12265 PF00293 NUDIX domain TQ29_12275 PF03441 FAD binding domain of DNA photolyase TQ29_12275 PF00875 DNA photolyase TQ29_12280 PF00266 Aminotransferase class-V TQ29_12285 PF00107 Zinc-binding dehydrogenase TQ29_12290 PF00939 Sodium:sulfate symporter transmembrane region TQ29_12305 PF10415 Fumarase C C-terminus TQ29_12305 PF00206 Lyase TQ29_12320 PF02657 Fe-S metabolism associated domain TQ29_12330 PF01612 3'-5' exonuclease TQ29_12330 PF00570 HRDC domain TQ29_12335 PF00551 Formyl transferase TQ29_12340 PF00586 AIR synthase related protein, N-terminal domain TQ29_12340 PF02769 AIR synthase related protein, C-terminal domain TQ29_12350 PF00512 His Kinase A (phospho-acceptor) domain TQ29_12350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_12350 PF00672 HAMP domain TQ29_12355 PF00753 Metallo-beta-lactamase superfamily TQ29_12355 PF16123 Hydroxyacylglutathione hydrolase C-terminus TQ29_12370 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) TQ29_12370 PF02152 Dihydroneopterin aldolase TQ29_12375 PF00809 Pterin binding enzyme TQ29_12380 PF01063 Amino-transferase class IV TQ29_12385 PF00591 Glycosyl transferase family, a/b domain TQ29_12385 PF00117 Glutamine amidotransferase class-I TQ29_12385 PF02885 Glycosyl transferase family, helical bundle domain TQ29_12390 PF00425 chorismate binding enzyme TQ29_12390 PF04715 Anthranilate synthase component I, N terminal region TQ29_12395 PF01227 GTP cyclohydrolase I TQ29_12400 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_12415 PF00440 Bacterial regulatory proteins, tetR family TQ29_12415 PF08361 MAATS-type transcriptional repressor, C-terminal region TQ29_12420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TQ29_12420 PF00529 HlyD membrane-fusion protein of T1SS TQ29_12425 PF00873 AcrB/AcrD/AcrF family TQ29_12445 PF00005 ABC transporter TQ29_12450 PF01032 FecCD transport family TQ29_12455 PF01032 FecCD transport family TQ29_12460 PF01497 Periplasmic binding protein TQ29_12480 PF01618 MotA/TolQ/ExbB proton channel family TQ29_12485 PF07715 TonB-dependent Receptor Plug Domain TQ29_12485 PF00593 TonB dependent receptor TQ29_12500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_12500 PF03466 LysR substrate binding domain TQ29_12505 PF01613 Flavin reductase like domain TQ29_12515 PF00296 Luciferase-like monooxygenase TQ29_12525 PF00005 ABC transporter TQ29_12530 PF02653 Branched-chain amino acid transport system / permease component TQ29_12535 PF02625 XdhC and CoxI family TQ29_12535 PF13478 XdhC Rossmann domain TQ29_12555 PF00005 ABC transporter TQ29_12565 PF01494 FAD binding domain TQ29_12575 PF00857 Isochorismatase family TQ29_12580 PF17645 Arylmalonate decarboxylase TQ29_12585 PF00561 alpha/beta hydrolase fold TQ29_12595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_12600 PF00296 Luciferase-like monooxygenase TQ29_12605 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_12610 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_12610 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_12615 PF00005 ABC transporter TQ29_12615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_12620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_12620 PF00005 ABC transporter TQ29_12630 PF00296 Luciferase-like monooxygenase TQ29_12640 PF02653 Branched-chain amino acid transport system / permease component TQ29_12645 PF00005 ABC transporter TQ29_12650 PF02653 Branched-chain amino acid transport system / permease component TQ29_12655 PF02653 Branched-chain amino acid transport system / permease component TQ29_12660 PF00005 ABC transporter TQ29_12680 PF01266 FAD dependent oxidoreductase TQ29_12685 PF00005 ABC transporter TQ29_12685 PF08402 TOBE domain TQ29_12690 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_12700 PF01527 Transposase TQ29_12710 PF13817 IS66 C-terminal element TQ29_12710 PF13005 zinc-finger binding domain of transposase IS66 TQ29_12710 PF13007 Transposase C of IS166 homeodomain TQ29_12710 PF03050 Transposase IS66 family TQ29_12750 PF01613 Flavin reductase like domain TQ29_12760 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain TQ29_12760 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase TQ29_12780 PF17645 Arylmalonate decarboxylase TQ29_12790 PF00941 FAD binding domain in molybdopterin dehydrogenase TQ29_12790 PF03450 CO dehydrogenase flavoprotein C-terminal domain TQ29_12795 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TQ29_12795 PF00391 PEP-utilising enzyme, mobile domain TQ29_12800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain TQ29_12800 PF00391 PEP-utilising enzyme, mobile domain TQ29_12805 PF00857 Isochorismatase family TQ29_12815 PF01527 Transposase TQ29_12855 PF00132 Bacterial transferase hexapeptide (six repeats) TQ29_12860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I TQ29_12860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II TQ29_12860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III TQ29_12860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain TQ29_12900 PF00491 Arginase family TQ29_12905 PF00005 ABC transporter TQ29_12905 PF12857 TOBE-like domain TQ29_12910 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_12940 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) TQ29_12955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TQ29_12955 PF00378 Enoyl-CoA hydratase/isomerase TQ29_12955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TQ29_12970 PF00753 Metallo-beta-lactamase superfamily TQ29_12975 PF04143 Sulphur transport TQ29_12995 PF13492 GAF domain TQ29_12995 PF13493 Domain of unknown function (DUF4118) TQ29_12995 PF02702 Osmosensitive K+ channel His kinase sensor domain TQ29_12995 PF00512 His Kinase A (phospho-acceptor) domain TQ29_12995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_13005 PF00486 Transcriptional regulatory protein, C terminal TQ29_13005 PF00072 Response regulator receiver domain TQ29_13020 PF02653 Branched-chain amino acid transport system / permease component TQ29_13025 PF02653 Branched-chain amino acid transport system / permease component TQ29_13030 PF12399 Branched-chain amino acid ATP-binding cassette transporter TQ29_13030 PF00005 ABC transporter TQ29_13035 PF00005 ABC transporter TQ29_13040 PF00501 AMP-binding enzyme TQ29_13040 PF16177 Acetyl-coenzyme A synthetase N-terminus TQ29_13040 PF13193 AMP-binding enzyme C-terminal domain TQ29_13050 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_13055 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_13060 PF00005 ABC transporter TQ29_13065 PF01979 Amidohydrolase family TQ29_13075 PF07687 Peptidase dimerisation domain TQ29_13075 PF01546 Peptidase family M20/M25/M40 TQ29_13080 PF00202 Aminotransferase class-III TQ29_13085 PF00440 Bacterial regulatory proteins, tetR family TQ29_13085 PF08362 YcdC-like protein, C-terminal region TQ29_13090 PF01180 Dihydroorotate dehydrogenase TQ29_13095 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster TQ29_13095 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_13100 PF00364 Biotin-requiring enzyme TQ29_13105 PF00289 Biotin carboxylase, N-terminal domain TQ29_13105 PF02785 Biotin carboxylase C-terminal domain TQ29_13105 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TQ29_13110 PF03588 Leucyl/phenylalanyl-tRNA protein transferase TQ29_13130 PF06689 ClpX C4-type zinc finger TQ29_13130 PF10431 C-terminal, D2-small domain, of ClpB protein TQ29_13130 PF07724 AAA domain (Cdc48 subfamily) TQ29_13135 PF00574 Clp protease TQ29_13140 PF13416 Bacterial extracellular solute-binding protein TQ29_13145 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_13150 PF00005 ABC transporter TQ29_13170 PF07568 Histidine kinase TQ29_13170 PF12282 Signal transduction histidine kinase TQ29_13170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_13175 PF04542 Sigma-70 region 2 TQ29_13175 PF08281 Sigma-70, region 4 TQ29_13185 PF00072 Response regulator receiver domain TQ29_13225 PF02773 S-adenosylmethionine synthetase, C-terminal domain TQ29_13225 PF02772 S-adenosylmethionine synthetase, central domain TQ29_13225 PF00438 S-adenosylmethionine synthetase, N-terminal domain TQ29_13250 PF01053 Cys/Met metabolism PLP-dependent enzyme TQ29_13265 PF02254 TrkA-N domain TQ29_13265 PF00999 Sodium/hydrogen exchanger family TQ29_13270 PF02559 CarD-like/TRCF domain TQ29_13275 PF00037 4Fe-4S binding domain TQ29_13275 PF11953 Domain of unknown function (DUF3470) TQ29_13280 PF01479 S4 domain TQ29_13305 PF01557 Fumarylacetoacetate (FAA) hydrolase family TQ29_13310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain TQ29_13310 PF01842 ACT domain TQ29_13310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TQ29_13335 PF04545 Sigma-70, region 4 TQ29_13335 PF04542 Sigma-70 region 2 TQ29_13335 PF00140 Sigma-70 factor, region 1.2 TQ29_13340 PF00849 RNA pseudouridylate synthase TQ29_13375 PF01029 NusB family TQ29_13380 PF00885 6,7-dimethyl-8-ribityllumazine synthase TQ29_13385 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TQ29_13385 PF00925 GTP cyclohydrolase II TQ29_13395 PF00677 Lumazine binding domain TQ29_13400 PF05159 Capsule polysaccharide biosynthesis protein TQ29_13410 PF05159 Capsule polysaccharide biosynthesis protein TQ29_13415 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region TQ29_13415 PF01872 RibD C-terminal domain TQ29_13420 PF03477 ATP cone domain TQ29_13425 PF01894 Uncharacterised protein family UPF0047 TQ29_13440 PF00140 Sigma-70 factor, region 1.2 TQ29_13440 PF04542 Sigma-70 region 2 TQ29_13440 PF04546 Sigma-70, non-essential region TQ29_13440 PF04545 Sigma-70, region 4 TQ29_13440 PF03979 Sigma-70 factor, region 1.1 TQ29_13440 PF04539 Sigma-70 region 3 TQ29_13445 PF10410 DnaB-helicase binding domain of primase TQ29_13445 PF08278 DNA primase DnaG DnaB-binding TQ29_13445 PF13662 Toprim domain TQ29_13445 PF08275 DNA primase catalytic core, N-terminal domain TQ29_13445 PF01807 CHC2 zinc finger TQ29_13455 PF17806 Sarcosine oxidase A3 domain TQ29_13455 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_13455 PF01571 Aminomethyltransferase folate-binding domain TQ29_13455 PF08669 Glycine cleavage T-protein C-terminal barrel domain TQ29_13460 PF04267 Sarcosine oxidase, delta subunit family TQ29_13465 PF01266 FAD dependent oxidoreductase TQ29_13470 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase TQ29_13470 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain TQ29_13505 PF01842 ACT domain TQ29_13505 PF03447 Homoserine dehydrogenase, NAD binding domain TQ29_13505 PF00742 Homoserine dehydrogenase TQ29_13510 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded TQ29_13515 PF01368 DHH family TQ29_13515 PF02272 DHHA1 domain TQ29_13515 PF17768 RecJ OB domain TQ29_13540 PF02515 CoA-transferase family III TQ29_13545 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_13545 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_13545 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_13560 PF00128 Alpha amylase, catalytic domain TQ29_13565 PF13660 Domain of unknown function (DUF4147) TQ29_13565 PF05161 MOFRL family TQ29_13575 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_13580 PF17336 Family of unknown function (DUF5368) TQ29_13585 PF03595 Voltage-dependent anion channel TQ29_13590 PF00950 ABC 3 transport family TQ29_13595 PF00005 ABC transporter TQ29_13620 PF00576 HIUase/Transthyretin family TQ29_13630 PF07883 Cupin domain TQ29_13630 PF05899 Protein of unknown function (DUF861) TQ29_13635 PF04115 Ureidoglycolate lyase TQ29_13640 PF00860 Permease family TQ29_13645 PF05378 Hydantoinase/oxoprolinase N-terminal region TQ29_13645 PF01968 Hydantoinase/oxoprolinase TQ29_13650 PF02322 Cytochrome bd terminal oxidase subunit II TQ29_13655 PF01654 Cytochrome bd terminal oxidase subunit I TQ29_13660 PF00664 ABC transporter transmembrane region TQ29_13660 PF00005 ABC transporter TQ29_13665 PF00664 ABC transporter transmembrane region TQ29_13665 PF00005 ABC transporter TQ29_13670 PF02397 Bacterial sugar transferase TQ29_13685 PF02706 Chain length determinant protein TQ29_13685 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TQ29_13685 PF13807 G-rich domain on putative tyrosine kinase TQ29_13690 PF02563 Polysaccharide biosynthesis/export protein TQ29_13690 PF10531 SLBB domain TQ29_13690 PF18412 Outer-membrane lipoprotein Wza C-terminal domain TQ29_13700 PF06082 Exopolysaccharide biosynthesis protein YbjH TQ29_13710 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_13740 PF13439 Glycosyltransferase Family 4 TQ29_13740 PF00534 Glycosyl transferases group 1 TQ29_13755 PF13439 Glycosyltransferase Family 4 TQ29_13755 PF00534 Glycosyl transferases group 1 TQ29_13790 PF01738 Dienelactone hydrolase family TQ29_13790 PF00156 Phosphoribosyl transferase domain TQ29_13795 PF00011 Hsp20/alpha crystallin family TQ29_13810 PF01177 Asp/Glu/Hydantoin racemase TQ29_13820 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_13830 PF08402 TOBE domain TQ29_13830 PF00005 ABC transporter TQ29_13845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_13850 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_13855 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_13855 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_13860 PF00005 ABC transporter TQ29_13860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_13865 PF01515 Phosphate acetyl/butaryl transferase TQ29_13875 PF00586 AIR synthase related protein, N-terminal domain TQ29_13875 PF02769 AIR synthase related protein, C-terminal domain TQ29_13885 PF02687 FtsX-like permease family TQ29_13885 PF12704 MacB-like periplasmic core domain TQ29_13890 PF00005 ABC transporter TQ29_13895 PF13416 Bacterial extracellular solute-binding protein TQ29_13900 PF00005 ABC transporter TQ29_13900 PF08402 TOBE domain TQ29_13905 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_13910 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_13935 PF01230 HIT domain TQ29_13950 PF00005 ABC transporter TQ29_13955 PF00294 pfkB family carbohydrate kinase TQ29_13960 PF10576 Iron-sulfur binding domain of endonuclease III TQ29_13960 PF00730 HhH-GPD superfamily base excision DNA repair protein TQ29_13960 PF00633 Helix-hairpin-helix motif TQ29_13970 PF12833 Helix-turn-helix domain TQ29_13970 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain TQ29_13970 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain TQ29_13970 PF02805 Metal binding domain of Ada TQ29_13975 PF00691 OmpA family TQ29_13975 PF13488 Glycine zipper TQ29_13980 PF07729 FCD domain TQ29_13980 PF00392 Bacterial regulatory proteins, gntR family TQ29_13985 PF00430 ATP synthase B/B' CF(0) TQ29_13990 PF00430 ATP synthase B/B' CF(0) TQ29_13995 PF00137 ATP synthase subunit C TQ29_14000 PF00119 ATP synthase A chain TQ29_14020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_14020 PF03466 LysR substrate binding domain TQ29_14025 PF02525 Flavodoxin-like fold TQ29_14030 PF00448 SRP54-type protein, GTPase domain TQ29_14030 PF02881 SRP54-type protein, helical bundle domain TQ29_14030 PF02978 Signal peptide binding domain TQ29_14035 PF13302 Acetyltransferase (GNAT) domain TQ29_14055 PF00886 Ribosomal protein S16 TQ29_14060 PF05239 PRC-barrel domain TQ29_14060 PF01782 RimM N-terminal domain TQ29_14065 PF01746 tRNA (Guanine-1)-methyltransferase TQ29_14070 PF01245 Ribosomal protein L19 TQ29_14075 PF01197 Ribosomal protein L31 TQ29_14080 PF01883 Iron-sulfur cluster assembly protein TQ29_14080 PF10609 NUBPL iron-transfer P-loop NTPase TQ29_14110 PF00665 Integrase core domain TQ29_14145 PF04945 YHS domain TQ29_14150 PF09335 SNARE associated Golgi protein TQ29_14195 PF00440 Bacterial regulatory proteins, tetR family TQ29_14215 PF01926 50S ribosome-binding GTPase TQ29_14215 PF06071 Protein of unknown function (DUF933) TQ29_14220 PF00290 Tryptophan synthase alpha chain TQ29_14225 PF01642 Methylmalonyl-CoA mutase TQ29_14225 PF02310 B12 binding domain TQ29_14240 PF02785 Biotin carboxylase C-terminal domain TQ29_14240 PF00289 Biotin carboxylase, N-terminal domain TQ29_14240 PF00364 Biotin-requiring enzyme TQ29_14240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain TQ29_14240 PF18140 Propionyl-coenzyme A carboxylase BT domain TQ29_14255 PF01042 Endoribonuclease L-PSP TQ29_14265 PF01039 Carboxyl transferase domain TQ29_14270 PF07690 Major Facilitator Superfamily TQ29_14275 PF01381 Helix-turn-helix TQ29_14275 PF06114 IrrE N-terminal-like domain TQ29_14275 PF09856 Predicted transcriptional regulator (DUF2083) TQ29_14300 PF01709 Transcriptional regulator TQ29_14305 PF00916 Sulfate permease family TQ29_14305 PF01740 STAS domain TQ29_14315 PF02080 TrkA-C domain TQ29_14315 PF03600 Citrate transporter TQ29_14325 PF13277 YmdB-like protein TQ29_14330 PF01812 5-formyltetrahydrofolate cyclo-ligase family TQ29_14335 PF03448 MgtE intracellular N domain TQ29_14335 PF01769 Divalent cation transporter TQ29_14335 PF00571 CBS domain TQ29_14340 PF01979 Amidohydrolase family TQ29_14355 PF03884 DNA gyrase inhibitor YacG TQ29_14360 PF10150 Ribonuclease E/G family TQ29_14365 PF02545 Maf-like protein TQ29_14370 PF01176 Translation initiation factor 1A / IF-1 TQ29_14380 PF06793 Uncharacterised protein family (UPF0262) TQ29_14385 PF00815 Histidinol dehydrogenase TQ29_14400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) TQ29_14450 PF02796 Helix-turn-helix domain of resolvase TQ29_14450 PF00239 Resolvase, N terminal domain TQ29_14475 PF12161 HsdM N-terminal domain TQ29_14475 PF02384 N-6 DNA Methylase TQ29_14480 PF01420 Type I restriction modification DNA specificity domain TQ29_14485 PF04851 Type III restriction enzyme, res subunit TQ29_14485 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) TQ29_14485 PF08463 EcoEI R protein C-terminal TQ29_14485 PF00271 Helicase conserved C-terminal domain TQ29_14505 PF13362 Toprim domain TQ29_14505 PF18818 Metallopeptidase superfamily domain TQ29_14505 PF08401 Domain of unknown function (DUF1738) TQ29_14535 PF00873 AcrB/AcrD/AcrF family TQ29_14550 PF01791 DeoC/LacD family aldolase TQ29_14555 PF00171 Aldehyde dehydrogenase family TQ29_14560 PF07509 Protein of unknown function (DUF1523) TQ29_14570 PF07687 Peptidase dimerisation domain TQ29_14570 PF01546 Peptidase family M20/M25/M40 TQ29_14575 PF02569 Pantoate-beta-alanine ligase TQ29_14580 PF02548 Ketopantoate hydroxymethyltransferase TQ29_14585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_14590 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_14595 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_14595 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_14600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_14600 PF00005 ABC transporter TQ29_14605 PF03576 Peptidase family S58 TQ29_14610 PF00171 Aldehyde dehydrogenase family TQ29_14620 PF00011 Hsp20/alpha crystallin family TQ29_14625 PF00089 Trypsin TQ29_14630 PF02754 Cysteine-rich domain TQ29_14630 PF13183 4Fe-4S dicluster domain TQ29_14635 PF01565 FAD binding domain TQ29_14640 PF01565 FAD binding domain TQ29_14640 PF02913 FAD linked oxidases, C-terminal domain TQ29_14670 PF07726 ATPase family associated with various cellular activities (AAA) TQ29_14670 PF17863 AAA lid domain TQ29_14680 PF01261 Xylose isomerase-like TIM barrel TQ29_14690 PF01545 Cation efflux family TQ29_14695 PF01612 3'-5' exonuclease TQ29_14695 PF00476 DNA polymerase family A TQ29_14695 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain TQ29_14695 PF01367 5'-3' exonuclease, C-terminal SAM fold TQ29_14715 PF00005 ABC transporter TQ29_14720 PF13472 GDSL-like Lipase/Acylhydrolase family TQ29_14725 PF02913 FAD linked oxidases, C-terminal domain TQ29_14725 PF01565 FAD binding domain TQ29_14730 PF00175 Oxidoreductase NAD-binding domain TQ29_14730 PF00970 Oxidoreductase FAD-binding domain TQ29_14735 PF11953 Domain of unknown function (DUF3470) TQ29_14735 PF00037 4Fe-4S binding domain TQ29_14745 PF00890 FAD binding domain TQ29_14745 PF02910 Fumarate reductase flavoprotein C-term TQ29_14765 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_14775 PF00005 ABC transporter TQ29_14790 PF00034 Cytochrome c TQ29_14795 PF13545 Crp-like helix-turn-helix domain TQ29_14795 PF00027 Cyclic nucleotide-binding domain TQ29_14800 PF03601 Conserved hypothetical protein 698 TQ29_14805 PF03900 Porphobilinogen deaminase, C-terminal domain TQ29_14805 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain TQ29_14810 PF01208 Uroporphyrinogen decarboxylase (URO-D) TQ29_14825 PF00849 RNA pseudouridylate synthase TQ29_14830 PF01218 Coproporphyrinogen III oxidase TQ29_14845 PF08468 Methyltransferase small domain N-terminal TQ29_14845 PF05175 Methyltransferase small domain TQ29_14850 PF02617 ATP-dependent Clp protease adaptor protein ClpS TQ29_14860 PF07943 Penicillin-binding protein 5, C-terminal domain TQ29_14860 PF00768 D-alanyl-D-alanine carboxypeptidase TQ29_14865 PF03597 Cytochrome oxidase maturation protein cbb3-type TQ29_14880 PF13746 4Fe-4S dicluster domain TQ29_14880 PF12801 4Fe-4S binding domain TQ29_14880 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase TQ29_14885 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TQ29_14885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TQ29_14900 PF00115 Cytochrome C and Quinol oxidase polypeptide I TQ29_14910 PF00027 Cyclic nucleotide-binding domain TQ29_14910 PF13545 Crp-like helix-turn-helix domain TQ29_14915 PF04055 Radical SAM superfamily TQ29_14920 PF00005 ABC transporter TQ29_14920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_14925 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_14925 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_14930 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_14935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_14945 PF00034 Cytochrome c TQ29_14950 PF01817 Chorismate mutase type II TQ29_14950 PF00800 Prephenate dehydratase TQ29_14960 PF00293 NUDIX domain TQ29_14960 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain TQ29_14960 PF09297 NADH pyrophosphatase zinc ribbon domain TQ29_14965 PF00149 Calcineurin-like phosphoesterase TQ29_14965 PF02872 5'-nucleotidase, C-terminal domain TQ29_14970 PF13419 Haloacid dehalogenase-like hydrolase TQ29_14980 PF00005 ABC transporter TQ29_14985 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_15005 PF00271 Helicase conserved C-terminal domain TQ29_15005 PF00270 DEAD/DEAH box helicase TQ29_15010 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding TQ29_15010 PF12170 DNA polymerase III tau subunit V interacting with alpha TQ29_15010 PF12169 DNA polymerase III subunits gamma and tau domain III TQ29_15015 PF02575 YbaB/EbfC DNA-binding family TQ29_15020 PF13662 Toprim domain TQ29_15020 PF02132 RecR protein TQ29_15030 PF00445 Ribonuclease T2 family TQ29_15035 PF01292 Prokaryotic cytochrome b561 TQ29_15045 PF00109 Beta-ketoacyl synthase, N-terminal domain TQ29_15045 PF00698 Acyl transferase domain TQ29_15045 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_15045 PF00107 Zinc-binding dehydrogenase TQ29_15045 PF16197 Ketoacyl-synthetase C-terminal extension TQ29_15045 PF14765 Polyketide synthase dehydratase TQ29_15045 PF02801 Beta-ketoacyl synthase, C-terminal domain TQ29_15045 PF08659 KR domain TQ29_15045 PF00550 Phosphopantetheine attachment site TQ29_15060 PF03976 Polyphosphate kinase 2 (PPK2) TQ29_15065 PF02386 Cation transport protein TQ29_15070 PF01037 Lrp/AsnC ligand binding domain TQ29_15075 PF01262 Alanine dehydrogenase/PNT, C-terminal domain TQ29_15075 PF05222 Alanine dehydrogenase/PNT, N-terminal domain TQ29_15080 PF01741 Large-conductance mechanosensitive channel, MscL TQ29_15085 PF02798 Glutathione S-transferase, N-terminal domain TQ29_15085 PF00043 Glutathione S-transferase, C-terminal domain TQ29_15090 PF01738 Dienelactone hydrolase family TQ29_15090 PF00156 Phosphoribosyl transferase domain TQ29_15095 PF03484 tRNA synthetase B5 domain TQ29_15095 PF03483 B3/4 domain TQ29_15095 PF03147 Ferredoxin-fold anticodon binding domain TQ29_15095 PF01588 Putative tRNA binding domain TQ29_15095 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain TQ29_15100 PF01409 tRNA synthetases class II core domain (F) TQ29_15100 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain TQ29_15105 PF00453 Ribosomal protein L20 TQ29_15110 PF01632 Ribosomal protein L35 TQ29_15115 PF02887 Pyruvate kinase, alpha/beta domain TQ29_15115 PF00224 Pyruvate kinase, barrel domain TQ29_15140 PF01063 Amino-transferase class IV TQ29_15145 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TQ29_15145 PF13378 Enolase C-terminal domain-like TQ29_15155 PF03328 HpcH/HpaI aldolase/citrate lyase family TQ29_15165 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit TQ29_15185 PF00005 ABC transporter TQ29_15200 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TQ29_15200 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain TQ29_15205 PF00206 Lyase TQ29_15205 PF14698 Argininosuccinate lyase C-terminal TQ29_15210 PF08534 Redoxin TQ29_15215 PF03352 Methyladenine glycosylase TQ29_15225 PF02803 Thiolase, C-terminal domain TQ29_15225 PF00108 Thiolase, N-terminal domain TQ29_15245 PF00348 Polyprenyl synthetase TQ29_15250 PF08544 GHMP kinases C terminal TQ29_15250 PF00288 GHMP kinases N terminal domain TQ29_15265 PF03449 Transcription elongation factor, N-terminal TQ29_15265 PF01272 Transcription elongation factor, GreA/GreB, C-term TQ29_15275 PF12804 MobA-like NTP transferase domain TQ29_15310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_15310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_15310 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_15310 PF12806 Acetyl-CoA dehydrogenase C-terminal like TQ29_15315 PF03481 Putative GTP-binding controlling metal-binding TQ29_15315 PF01300 Telomere recombination TQ29_15320 PF02622 Uncharacterized ACR, COG1678 TQ29_15330 PF00873 AcrB/AcrD/AcrF family TQ29_15345 PF00994 Probable molybdopterin binding domain TQ29_15350 PF03167 Uracil DNA glycosylase superfamily TQ29_15355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain TQ29_15355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain TQ29_15360 PF01979 Amidohydrolase family TQ29_15365 PF02660 Glycerol-3-phosphate acyltransferase TQ29_15385 PF04452 RNA methyltransferase TQ29_15390 PF01040 UbiA prenyltransferase family TQ29_15395 PF05736 OprF membrane domain TQ29_15395 PF00691 OmpA family TQ29_15405 PF01219 Prokaryotic diacylglycerol kinase TQ29_15415 PF02391 MoaE protein TQ29_15425 PF01066 CDP-alcohol phosphatidyltransferase TQ29_15430 PF08459 UvrC Helix-hairpin-helix N-terminal TQ29_15430 PF02151 UvrB/uvrC motif TQ29_15430 PF01541 GIY-YIG catalytic domain TQ29_15430 PF12826 Helix-hairpin-helix motif TQ29_15440 PF01699 Sodium/calcium exchanger protein TQ29_15450 PF06965 Na+/H+ antiporter 1 TQ29_15450 PF01343 Peptidase family S49 TQ29_15460 PF03459 TOBE domain TQ29_15460 PF10649 Protein of unknown function (DUF2478) TQ29_15460 PF00005 ABC transporter TQ29_15470 PF01568 Molydopterin dinucleotide binding domain TQ29_15470 PF00384 Molybdopterin oxidoreductase TQ29_15470 PF18465 Rieske 3Fe-4S TQ29_15480 PF03150 Di-haem cytochrome c peroxidase TQ29_15485 PF03150 Di-haem cytochrome c peroxidase TQ29_15490 PF00034 Cytochrome c TQ29_15500 PF00072 Response regulator receiver domain TQ29_15500 PF00486 Transcriptional regulatory protein, C terminal TQ29_15510 PF04403 Paraquat-inducible protein A TQ29_15515 PF02470 MlaD protein TQ29_15525 PF00582 Universal stress protein family TQ29_15545 PF00202 Aminotransferase class-III TQ29_15555 PF06421 GTP-binding protein LepA C-terminus TQ29_15555 PF00679 Elongation factor G C-terminus TQ29_15555 PF00009 Elongation factor Tu GTP binding domain TQ29_15555 PF03144 Elongation factor Tu domain 2 TQ29_15570 PF00676 Dehydrogenase E1 component TQ29_15575 PF02779 Transketolase, pyrimidine binding domain TQ29_15575 PF02780 Transketolase, C-terminal domain TQ29_15580 PF00364 Biotin-requiring enzyme TQ29_15580 PF00561 alpha/beta hydrolase fold TQ29_15600 PF00107 Zinc-binding dehydrogenase TQ29_15600 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_15600 PF13823 Alcohol dehydrogenase GroES-associated TQ29_15605 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TQ29_15605 PF00034 Cytochrome c TQ29_15610 PF00732 GMC oxidoreductase TQ29_15610 PF05199 GMC oxidoreductase TQ29_15615 PF13618 Gluconate 2-dehydrogenase subunit 3 TQ29_15625 PF08281 Sigma-70, region 4 TQ29_15625 PF04542 Sigma-70 region 2 TQ29_15655 PF05974 Domain of unknown function (DUF892) TQ29_15660 PF00067 Cytochrome P450 TQ29_15675 PF00248 Aldo/keto reductase family TQ29_15680 PF06055 Exopolysaccharide synthesis, ExoD TQ29_15700 PF00115 Cytochrome C and Quinol oxidase polypeptide I TQ29_15705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain TQ29_15705 PF02790 Cytochrome C oxidase subunit II, transmembrane domain TQ29_15705 PF00034 Cytochrome c TQ29_15730 PF02358 Trehalose-phosphatase TQ29_15735 PF00571 CBS domain TQ29_15755 PF00890 FAD binding domain TQ29_15770 PF00005 ABC transporter TQ29_15770 PF12399 Branched-chain amino acid ATP-binding cassette transporter TQ29_15775 PF00005 ABC transporter TQ29_15800 PF01557 Fumarylacetoacetate (FAA) hydrolase family TQ29_15805 PF00392 Bacterial regulatory proteins, gntR family TQ29_15805 PF07729 FCD domain TQ29_15810 PF01494 FAD binding domain TQ29_15815 PF00497 Bacterial extracellular solute-binding proteins, family 3 TQ29_15820 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_15825 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_15830 PF00005 ABC transporter TQ29_15835 PF07702 UTRA domain TQ29_15835 PF00392 Bacterial regulatory proteins, gntR family TQ29_15840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_15840 PF03466 LysR substrate binding domain TQ29_15845 PF00491 Arginase family TQ29_15850 PF00155 Aminotransferase class I and II TQ29_15855 PF01979 Amidohydrolase family TQ29_15860 PF01979 Amidohydrolase family TQ29_15865 PF00221 Aromatic amino acid lyase TQ29_15875 PF01175 Urocanase Rossmann-like domain TQ29_15875 PF17392 Urocanase C-terminal domain TQ29_15875 PF17391 Urocanase N-terminal domain TQ29_15890 PF01565 FAD binding domain TQ29_15890 PF02913 FAD linked oxidases, C-terminal domain TQ29_15895 PF00296 Luciferase-like monooxygenase TQ29_15900 PF02954 Bacterial regulatory protein, Fis family TQ29_15900 PF01590 GAF domain TQ29_15900 PF00158 Sigma-54 interaction domain TQ29_15905 PF05378 Hydantoinase/oxoprolinase N-terminal region TQ29_15905 PF01968 Hydantoinase/oxoprolinase TQ29_15910 PF02538 Hydantoinase B/oxoprolinase TQ29_15915 PF08882 Acetone carboxylase gamma subunit TQ29_15920 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_15920 PF00107 Zinc-binding dehydrogenase TQ29_15920 PF13823 Alcohol dehydrogenase GroES-associated TQ29_15930 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_15930 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_15935 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_15940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_15945 PF00005 ABC transporter TQ29_15945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_15950 PF00005 ABC transporter TQ29_15950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region TQ29_15955 PF00392 Bacterial regulatory proteins, gntR family TQ29_15955 PF07729 FCD domain TQ29_15965 PF03069 Acetamidase/Formamidase family TQ29_15970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle TQ29_15975 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_15980 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_15980 PF12911 N-terminal TM domain of oligopeptide transport permease C TQ29_15985 PF03480 Bacterial extracellular solute-binding protein, family 7 TQ29_15995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_16005 PF01925 Sulfite exporter TauE/SafE TQ29_16010 PF07729 FCD domain TQ29_16010 PF00392 Bacterial regulatory proteins, gntR family TQ29_16015 PF02653 Branched-chain amino acid transport system / permease component TQ29_16025 PF00005 ABC transporter TQ29_16030 PF02608 ABC transporter substrate-binding protein PnrA-like TQ29_16040 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal TQ29_16040 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal TQ29_16050 PF01425 Amidase TQ29_16055 PF01425 Amidase TQ29_16065 PF01613 Flavin reductase like domain TQ29_16075 PF00266 Aminotransferase class-V TQ29_16085 PF00732 GMC oxidoreductase TQ29_16085 PF05199 GMC oxidoreductase TQ29_16090 PF02082 Transcriptional regulator TQ29_16100 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_16105 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_16115 PF13404 AsnC-type helix-turn-helix domain TQ29_16115 PF01037 Lrp/AsnC ligand binding domain TQ29_16125 PF07836 DmpG-like communication domain TQ29_16125 PF00682 HMGL-like TQ29_16130 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation TQ29_16130 PF01118 Semialdehyde dehydrogenase, NAD binding domain TQ29_16135 PF01557 Fumarylacetoacetate (FAA) hydrolase family TQ29_16140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TQ29_16145 PF01494 FAD binding domain TQ29_16150 PF00561 alpha/beta hydrolase fold TQ29_16170 PF00682 HMGL-like TQ29_16170 PF07836 DmpG-like communication domain TQ29_16175 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation TQ29_16175 PF01118 Semialdehyde dehydrogenase, NAD binding domain TQ29_16180 PF01557 Fumarylacetoacetate (FAA) hydrolase family TQ29_16190 PF00106 short chain dehydrogenase TQ29_16200 PF00355 Rieske [2Fe-2S] domain TQ29_16200 PF00848 Ring hydroxylating alpha subunit (catalytic domain) TQ29_16210 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase TQ29_16220 PF00561 alpha/beta hydrolase fold TQ29_16225 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_16240 PF13193 AMP-binding enzyme C-terminal domain TQ29_16240 PF00501 AMP-binding enzyme TQ29_16245 PF00672 HAMP domain TQ29_16245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_16245 PF00512 His Kinase A (phospho-acceptor) domain TQ29_16250 PF00486 Transcriptional regulatory protein, C terminal TQ29_16250 PF00072 Response regulator receiver domain TQ29_16265 PF02654 Cobalamin-5-phosphate synthase TQ29_16270 PF02277 Phosphoribosyltransferase TQ29_16275 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase TQ29_16290 PF03186 CobD/Cbib protein TQ29_16295 PF00155 Aminotransferase class I and II TQ29_16300 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TQ29_16300 PF07685 CobB/CobQ-like glutamine amidotransferase domain TQ29_16305 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP TQ29_16315 PF02492 CobW/HypB/UreG, nucleotide-binding domain TQ29_16315 PF07683 Cobalamin synthesis protein cobW C-terminal domain TQ29_16320 PF02514 CobN/Magnesium Chelatase TQ29_16325 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TQ29_16330 PF02570 Precorrin-8X methylmutase TQ29_16335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_16340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_16345 PF02571 Precorrin-6x reductase CbiJ/CobK TQ29_16350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_16360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_16365 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain TQ29_16365 PF07685 CobB/CobQ-like glutamine amidotransferase domain TQ29_16370 PF10414 Sirohaem synthase dimerisation region TQ29_16370 PF14824 Sirohaem biosynthesis protein central TQ29_16370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_16380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_16385 PF00440 Bacterial regulatory proteins, tetR family TQ29_16400 PF04632 Fusaric acid resistance protein family TQ29_16420 PF01557 Fumarylacetoacetate (FAA) hydrolase family TQ29_16425 PF01494 FAD binding domain TQ29_16430 PF03480 Bacterial extracellular solute-binding protein, family 7 TQ29_16440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component TQ29_16445 PF00355 Rieske [2Fe-2S] domain TQ29_16450 PF00970 Oxidoreductase FAD-binding domain TQ29_16450 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_16450 PF00175 Oxidoreductase NAD-binding domain TQ29_16455 PF07883 Cupin domain TQ29_16460 PF00171 Aldehyde dehydrogenase family TQ29_16470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TQ29_16470 PF13378 Enolase C-terminal domain-like TQ29_16480 PF00866 Ring hydroxylating beta subunit TQ29_16485 PF00175 Oxidoreductase NAD-binding domain TQ29_16485 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_16485 PF00970 Oxidoreductase FAD-binding domain TQ29_16490 PF00106 short chain dehydrogenase TQ29_16500 PF02653 Branched-chain amino acid transport system / permease component TQ29_16510 PF12399 Branched-chain amino acid ATP-binding cassette transporter TQ29_16510 PF00005 ABC transporter TQ29_16515 PF00005 ABC transporter TQ29_16520 PF03466 LysR substrate binding domain TQ29_16520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_16525 PF00775 Dioxygenase TQ29_16525 PF04444 Catechol dioxygenase N terminus TQ29_16535 PF00561 alpha/beta hydrolase fold TQ29_16550 PF01494 FAD binding domain TQ29_16625 PF01794 Ferric reductase like transmembrane component TQ29_16630 PF00174 Oxidoreductase molybdopterin binding domain TQ29_16640 PF01645 Conserved region in glutamate synthase TQ29_16655 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_16655 PF07724 AAA domain (Cdc48 subfamily) TQ29_16655 PF17871 AAA lid domain TQ29_16655 PF02861 Clp amino terminal domain, pathogenicity island component TQ29_16655 PF10431 C-terminal, D2-small domain, of ClpB protein TQ29_16670 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family TQ29_16680 PF01638 HxlR-like helix-turn-helix TQ29_16690 PF01145 SPFH domain / Band 7 family TQ29_16695 PF00817 impB/mucB/samB family TQ29_16695 PF11799 impB/mucB/samB family C-terminal domain TQ29_16710 PF00444 Ribosomal protein L36 TQ29_16715 PF00561 alpha/beta hydrolase fold TQ29_16715 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus TQ29_16725 PF02646 RmuC family TQ29_16730 PF08676 MutL C terminal dimerisation domain TQ29_16730 PF01119 DNA mismatch repair protein, C-terminal domain TQ29_16735 PF05193 Peptidase M16 inactive domain TQ29_16740 PF00675 Insulinase (Peptidase family M16) TQ29_16740 PF05193 Peptidase M16 inactive domain TQ29_16750 PF01252 Signal peptidase (SPase) II TQ29_16755 PF01808 AICARFT/IMPCHase bienzyme TQ29_16755 PF02142 MGS-like domain TQ29_16765 PF01029 NusB family TQ29_16765 PF01189 16S rRNA methyltransferase RsmB/F TQ29_16775 PF05173 Dihydrodipicolinate reductase, C-terminus TQ29_16775 PF01113 Dihydrodipicolinate reductase, N-terminus TQ29_16780 PF02033 Ribosome-binding factor A TQ29_16790 PF16198 tRNA pseudouridylate synthase B C-terminal domain TQ29_16790 PF01509 TruB family pseudouridylate synthase (N terminal domain) TQ29_16805 PF02780 Transketolase, C-terminal domain TQ29_16805 PF02779 Transketolase, pyrimidine binding domain TQ29_16810 PF00676 Dehydrogenase E1 component TQ29_16830 PF00312 Ribosomal protein S15 TQ29_16835 PF00013 KH domain TQ29_16835 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain TQ29_16835 PF01138 3' exoribonuclease family, domain 1 TQ29_16835 PF03725 3' exoribonuclease family, domain 2 TQ29_16835 PF00575 S1 RNA binding domain TQ29_16840 PF00578 AhpC/TSA family TQ29_16840 PF10417 C-terminal domain of 1-Cys peroxiredoxin TQ29_16845 PF00171 Aldehyde dehydrogenase family TQ29_16850 PF00849 RNA pseudouridylate synthase TQ29_16855 PF13185 GAF domain TQ29_16895 PF13491 4TM region of DNA translocase FtsK/SpoIIIE TQ29_16895 PF17854 FtsK alpha domain TQ29_16895 PF01580 FtsK/SpoIIIE family TQ29_16895 PF09397 Ftsk gamma domain TQ29_16900 PF00155 Aminotransferase class I and II TQ29_16905 PF01425 Amidase TQ29_16910 PF01494 FAD binding domain TQ29_16915 PF03966 Trm112p-like protein TQ29_16925 PF00085 Thioredoxin TQ29_16930 PF03372 Endonuclease/Exonuclease/phosphatase family TQ29_16950 PF00072 Response regulator receiver domain TQ29_16950 PF00486 Transcriptional regulatory protein, C terminal TQ29_16955 PF00925 GTP cyclohydrolase II TQ29_16965 PF01168 Alanine racemase, N-terminal domain TQ29_16970 PF13181 Tetratricopeptide repeat TQ29_16980 PF12100 Domain of unknown function (DUF3576) TQ29_16985 PF08264 Anticodon-binding domain of tRNA TQ29_16985 PF09334 tRNA synthetases class I (M) TQ29_16985 PF13603 Leucyl-tRNA synthetase, Domain 2 TQ29_16985 PF00133 tRNA synthetases class I (I, L, M and V) TQ29_17000 PF00296 Luciferase-like monooxygenase TQ29_17005 PF00252 Ribosomal protein L16p/L10e TQ29_17010 PF00378 Enoyl-CoA hydratase/isomerase TQ29_17025 PF01523 Putative modulator of DNA gyrase TQ29_17030 PF00459 Inositol monophosphatase family TQ29_17045 PF02606 Tetraacyldisaccharide-1-P 4'-kinase TQ29_17060 PF00730 HhH-GPD superfamily base excision DNA repair protein TQ29_17060 PF14815 NUDIX domain TQ29_17065 PF00487 Fatty acid desaturase TQ29_17070 PF00781 Diacylglycerol kinase catalytic domain TQ29_17080 PF01555 DNA methylase TQ29_17080 PF18755 Restriction Enzyme Adenine Methylase Associated TQ29_17085 PF01351 Ribonuclease HII TQ29_17095 PF00248 Aldo/keto reductase family TQ29_17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_17100 PF03466 LysR substrate binding domain TQ29_17110 PF00356 Bacterial regulatory proteins, lacI family TQ29_17110 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family TQ29_17115 PF00535 Glycosyl transferase family 2 TQ29_17125 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase TQ29_17135 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase TQ29_17140 PF16363 GDP-mannose 4,6 dehydratase TQ29_17145 PF04321 RmlD substrate binding domain TQ29_17150 PF00483 Nucleotidyl transferase TQ29_17160 PF01103 Surface antigen TQ29_17160 PF07244 Surface antigen variable number repeat TQ29_17160 PF17243 POTRA domain TamA domain 1 TQ29_17165 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases TQ29_17165 PF14824 Sirohaem biosynthesis protein central TQ29_17165 PF10414 Sirohaem synthase dimerisation region TQ29_17175 PF01077 Nitrite and sulphite reductase 4Fe-4S domain TQ29_17175 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain TQ29_17185 PF00970 Oxidoreductase FAD-binding domain TQ29_17185 PF00175 Oxidoreductase NAD-binding domain TQ29_17195 PF01678 Diaminopimelate epimerase TQ29_17200 PF04055 Radical SAM superfamily TQ29_17200 PF00919 Uncharacterized protein family UPF0004 TQ29_17210 PF00043 Glutathione S-transferase, C-terminal domain TQ29_17210 PF13417 Glutathione S-transferase, N-terminal domain TQ29_17220 PF00355 Rieske [2Fe-2S] domain TQ29_17220 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TQ29_17225 PF00032 Cytochrome b(C-terminal)/b6/petD TQ29_17225 PF00033 Cytochrome b/b6/petB TQ29_17230 PF02167 Cytochrome C1 family TQ29_17245 PF00005 ABC transporter TQ29_17250 PF00528 Binding-protein-dependent transport system inner membrane component TQ29_17260 PF01740 STAS domain TQ29_17260 PF00916 Sulfate permease family TQ29_17265 PF00034 Cytochrome c TQ29_17270 PF01264 Chorismate synthase TQ29_17285 PF01048 Phosphorylase superfamily TQ29_17285 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus TQ29_17300 PF02779 Transketolase, pyrimidine binding domain TQ29_17300 PF02780 Transketolase, C-terminal domain TQ29_17300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase TQ29_17305 PF00348 Polyprenyl synthetase TQ29_17310 PF02609 Exonuclease VII small subunit TQ29_17315 PF00850 Histone deacetylase domain TQ29_17320 PF00072 Response regulator receiver domain TQ29_17320 PF00486 Transcriptional regulatory protein, C terminal TQ29_17325 PF12802 MarR family TQ29_17330 PF01063 Amino-transferase class IV TQ29_17340 PF00005 ABC transporter TQ29_17355 PF00535 Glycosyl transferase family 2 TQ29_17390 PF00535 Glycosyl transferase family 2 TQ29_17395 PF03275 UDP-galactopyranose mutase TQ29_17410 PF06082 Exopolysaccharide biosynthesis protein YbjH TQ29_17415 PF02719 Polysaccharide biosynthesis protein TQ29_17420 PF02397 Bacterial sugar transferase TQ29_17430 PF02563 Polysaccharide biosynthesis/export protein TQ29_17430 PF18412 Outer-membrane lipoprotein Wza C-terminal domain TQ29_17430 PF10531 SLBB domain TQ29_17440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase TQ29_17440 PF00925 GTP cyclohydrolase II TQ29_17450 PF03358 NADPH-dependent FMN reductase TQ29_17455 PF01557 Fumarylacetoacetate (FAA) hydrolase family TQ29_17460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily TQ29_17465 PF05853 beta-keto acid cleavage enzyme TQ29_17485 PF01638 HxlR-like helix-turn-helix TQ29_17505 PF12697 Alpha/beta hydrolase family TQ29_17510 PF00196 Bacterial regulatory proteins, luxR family TQ29_17525 PF00890 FAD binding domain TQ29_17525 PF04205 FMN-binding domain TQ29_17525 PF03358 NADPH-dependent FMN reductase TQ29_17555 PF00108 Thiolase, N-terminal domain TQ29_17555 PF02803 Thiolase, C-terminal domain TQ29_17560 PF00378 Enoyl-CoA hydratase/isomerase TQ29_17565 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TQ29_17565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TQ29_17570 PF00378 Enoyl-CoA hydratase/isomerase TQ29_17575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_17575 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_17575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_17580 PF00766 Electron transfer flavoprotein FAD-binding domain TQ29_17580 PF01012 Electron transfer flavoprotein domain TQ29_17585 PF01012 Electron transfer flavoprotein domain TQ29_17600 PF00067 Cytochrome P450 TQ29_17605 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_17615 PF00890 FAD binding domain TQ29_17630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TQ29_17630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase TQ29_17635 PF00067 Cytochrome P450 TQ29_17640 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_17650 PF08028 Acyl-CoA dehydrogenase, C-terminal domain TQ29_17665 PF00107 Zinc-binding dehydrogenase TQ29_17665 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_17675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_17675 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_17675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_17680 PF00501 AMP-binding enzyme TQ29_17680 PF13193 AMP-binding enzyme C-terminal domain TQ29_17690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_17690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_17690 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_17695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TQ29_17695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TQ29_17695 PF00378 Enoyl-CoA hydratase/isomerase TQ29_17700 PF02803 Thiolase, C-terminal domain TQ29_17700 PF00108 Thiolase, N-terminal domain TQ29_17705 PF13458 Periplasmic binding protein TQ29_17710 PF02653 Branched-chain amino acid transport system / permease component TQ29_17720 PF00005 ABC transporter TQ29_17720 PF12399 Branched-chain amino acid ATP-binding cassette transporter TQ29_17725 PF00005 ABC transporter TQ29_17735 PF00529 HlyD membrane-fusion protein of T1SS TQ29_17735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion TQ29_17775 PF11867 Domain of unknown function (DUF3387) TQ29_17775 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TQ29_17775 PF18766 SWI2/SNF2 ATPase TQ29_17785 PF02534 Type IV secretory system Conjugative DNA transfer TQ29_17790 PF03432 Relaxase/Mobilisation nuclease domain TQ29_17830 PF00690 Cation transporter/ATPase, N-terminus TQ29_17830 PF00689 Cation transporting ATPase, C-terminus TQ29_17840 PF00582 Universal stress protein family TQ29_17845 PF06965 Na+/H+ antiporter 1 TQ29_17850 PF00484 Carbonic anhydrase TQ29_17860 PF03466 LysR substrate binding domain TQ29_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family TQ29_17945 PF03428 Replication protein C N-terminal domain TQ29_17945 PF11800 Replication protein C C-terminal region TQ29_17955 PF13614 AAA domain TQ29_17970 PF00239 Resolvase, N terminal domain TQ29_17975 PF00589 Phage integrase family TQ29_17985 PF04079 Segregation and condensation complex subunit ScpB TQ29_18020 PF00690 Cation transporter/ATPase, N-terminus TQ29_18020 PF00689 Cation transporting ATPase, C-terminus TQ29_18060 PF00239 Resolvase, N terminal domain TQ29_18060 PF02796 Helix-turn-helix domain of resolvase TQ29_18065 PF01526 Tn3 transposase DDE domain TQ29_18065 PF13700 Domain of unknown function (DUF4158) TQ29_18075 PF02796 Helix-turn-helix domain of resolvase TQ29_18075 PF00239 Resolvase, N terminal domain TQ29_18090 PF02810 SEC-C motif TQ29_18090 PF07517 SecA DEAD-like domain TQ29_18090 PF01043 SecA preprotein cross-linking domain TQ29_18090 PF07516 SecA Wing and Scaffold domain TQ29_18095 PF00440 Bacterial regulatory proteins, tetR family TQ29_18095 PF17932 Tetracyclin repressor-like, C-terminal domain TQ29_18105 PF02803 Thiolase, C-terminal domain TQ29_18105 PF00108 Thiolase, N-terminal domain TQ29_18110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TQ29_18110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain TQ29_18110 PF00378 Enoyl-CoA hydratase/isomerase TQ29_18115 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_18115 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_18115 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_18115 PF12806 Acetyl-CoA dehydrogenase C-terminal like TQ29_18120 PF00501 AMP-binding enzyme TQ29_18120 PF13193 AMP-binding enzyme C-terminal domain TQ29_18125 PF01575 MaoC like domain TQ29_18130 PF01695 IstB-like ATP binding protein TQ29_18135 PF00872 Transposase, Mutator family TQ29_18140 PF02796 Helix-turn-helix domain of resolvase TQ29_18140 PF00665 Integrase core domain TQ29_18145 PF01695 IstB-like ATP binding protein TQ29_18165 PF00239 Resolvase, N terminal domain TQ29_18165 PF02796 Helix-turn-helix domain of resolvase TQ29_18170 PF01526 Tn3 transposase DDE domain TQ29_18170 PF13700 Domain of unknown function (DUF4158) TQ29_18200 PF01609 Transposase DDE domain TQ29_18205 PF01548 Transposase TQ29_18210 PF13244 Domain of unknown function (DUF4040) TQ29_18210 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TQ29_18210 PF00361 Proton-conducting membrane transporter TQ29_18210 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter TQ29_18215 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L TQ29_18220 PF00361 Proton-conducting membrane transporter TQ29_18230 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) TQ29_18240 PF01695 IstB-like ATP binding protein TQ29_18270 PF01545 Cation efflux family TQ29_18275 PF09335 SNARE associated Golgi protein TQ29_18295 PF00072 Response regulator receiver domain TQ29_18295 PF00486 Transcriptional regulatory protein, C terminal TQ29_18300 PF00512 His Kinase A (phospho-acceptor) domain TQ29_18300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_18300 PF00672 HAMP domain TQ29_18310 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal TQ29_18310 PF01578 Cytochrome C assembly protein TQ29_18315 PF08534 Redoxin TQ29_18320 PF03918 Cytochrome C biogenesis protein TQ29_18330 PF02683 Cytochrome C biogenesis protein transmembrane region TQ29_18330 PF00578 AhpC/TSA family TQ29_18330 PF17991 Thioredoxin like C-terminal domain TQ29_18340 PF03734 L,D-transpeptidase catalytic domain TQ29_18355 PF00034 Cytochrome c TQ29_18360 PF07732 Multicopper oxidase TQ29_18360 PF07731 Multicopper oxidase TQ29_18365 PF00034 Cytochrome c TQ29_18365 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TQ29_18370 PF06965 Na+/H+ antiporter 1 TQ29_18370 PF13462 Thioredoxin TQ29_18375 PF00403 Heavy-metal-associated domain TQ29_18380 PF00376 MerR family regulatory protein TQ29_18380 PF09278 MerR, DNA binding TQ29_18400 PF07732 Multicopper oxidase TQ29_18400 PF07731 Multicopper oxidase TQ29_18400 PF00394 Multicopper oxidase TQ29_18410 PF03734 L,D-transpeptidase catalytic domain TQ29_18430 PF01790 Prolipoprotein diacylglyceryl transferase TQ29_18435 PF04945 YHS domain TQ29_18450 PF02683 Cytochrome C biogenesis protein transmembrane region TQ29_18460 PF00403 Heavy-metal-associated domain TQ29_18470 PF01325 Iron dependent repressor, N-terminal DNA binding domain TQ29_18470 PF02742 Iron dependent repressor, metal binding and dimerisation domain TQ29_18480 PF00795 Carbon-nitrogen hydrolase TQ29_18485 PF01252 Signal peptidase (SPase) II TQ29_18490 PF02535 ZIP Zinc transporter TQ29_18505 PF02630 SCO1/SenC TQ29_18515 PF13462 Thioredoxin TQ29_18520 PF02600 Disulfide bond formation protein DsbB TQ29_18525 PF02630 SCO1/SenC TQ29_18530 PF13411 MerR HTH family regulatory protein TQ29_18545 PF01545 Cation efflux family TQ29_18580 PF10145 Phage-related minor tail protein TQ29_18580 PF01551 Peptidase family M23 TQ29_18580 PF01464 Transglycosylase SLT domain TQ29_18600 PF01464 Transglycosylase SLT domain TQ29_18600 PF01551 Peptidase family M23 TQ29_18600 PF10145 Phage-related minor tail protein TQ29_18620 PF03743 Bacterial conjugation TrbI-like protein TQ29_18625 PF00437 Type II/IV secretion system protein TQ29_18710 PF01695 IstB-like ATP binding protein TQ29_18735 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_18755 PF03432 Relaxase/Mobilisation nuclease domain TQ29_18760 PF02534 Type IV secretory system Conjugative DNA transfer TQ29_18775 PF17853 GGDEF-like domain TQ29_18775 PF12833 Helix-turn-helix domain TQ29_18785 PF00743 Flavin-binding monooxygenase-like TQ29_18800 PF00171 Aldehyde dehydrogenase family TQ29_18805 PF02515 CoA-transferase family III TQ29_18810 PF00378 Enoyl-CoA hydratase/isomerase TQ29_18845 PF00106 short chain dehydrogenase TQ29_18850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_18850 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_18850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_18855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_18855 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_18855 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_18860 PF01575 MaoC like domain TQ29_18865 PF13380 CoA binding domain TQ29_18865 PF13607 Succinyl-CoA ligase like flavodoxin domain TQ29_18870 PF00108 Thiolase, N-terminal domain TQ29_18870 PF02803 Thiolase, C-terminal domain TQ29_18885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_18885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_18885 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_18900 PF03328 HpcH/HpaI aldolase/citrate lyase family TQ29_18905 PF00171 Aldehyde dehydrogenase family TQ29_18910 PF08240 Alcohol dehydrogenase GroES-like domain TQ29_18910 PF00107 Zinc-binding dehydrogenase TQ29_18925 PF00743 Flavin-binding monooxygenase-like TQ29_18930 PF07859 alpha/beta hydrolase fold TQ29_18940 PF02770 Acyl-CoA dehydrogenase, middle domain TQ29_18940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain TQ29_18940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain TQ29_18945 PF02371 Transposase IS116/IS110/IS902 family TQ29_18945 PF01548 Transposase TQ29_18965 PF00437 Type II/IV secretion system protein TQ29_18970 PF03743 Bacterial conjugation TrbI-like protein TQ29_18990 PF10145 Phage-related minor tail protein TQ29_18990 PF01464 Transglycosylase SLT domain TQ29_18990 PF01551 Peptidase family M23 TQ29_19010 PF01551 Peptidase family M23 TQ29_19010 PF10145 Phage-related minor tail protein TQ29_19010 PF01464 Transglycosylase SLT domain TQ29_19045 PF01850 PIN domain TQ29_19070 PF10544 T5orf172 domain TQ29_19075 PF01526 Tn3 transposase DDE domain TQ29_19075 PF13700 Domain of unknown function (DUF4158) TQ29_19080 PF02796 Helix-turn-helix domain of resolvase TQ29_19080 PF00239 Resolvase, N terminal domain TQ29_19085 PF00043 Glutathione S-transferase, C-terminal domain TQ29_19085 PF02798 Glutathione S-transferase, N-terminal domain TQ29_19095 PF14759 Reductase C-terminal TQ29_19095 PF07992 Pyridine nucleotide-disulphide oxidoreductase TQ29_19105 PF01323 DSBA-like thioredoxin domain TQ29_19110 PF00701 Dihydrodipicolinate synthetase family TQ29_19115 PF07883 Cupin domain TQ29_19120 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_19130 PF01557 Fumarylacetoacetate (FAA) hydrolase family TQ29_19135 PF00067 Cytochrome P450 TQ29_19140 PF00682 HMGL-like TQ29_19145 PF02515 CoA-transferase family III TQ29_19150 PF13417 Glutathione S-transferase, N-terminal domain TQ29_19155 PF01557 Fumarylacetoacetate (FAA) hydrolase family TQ29_19170 PF00848 Ring hydroxylating alpha subunit (catalytic domain) TQ29_19170 PF00355 Rieske [2Fe-2S] domain TQ29_19175 PF00866 Ring hydroxylating beta subunit TQ29_19180 PF00355 Rieske [2Fe-2S] domain TQ29_19185 PF00106 short chain dehydrogenase TQ29_19190 PF00171 Aldehyde dehydrogenase family TQ29_19200 PF00456 Transketolase, thiamine diphosphate binding domain TQ29_19200 PF17831 Pyruvate dehydrogenase E1 component middle domain TQ29_19210 PF01695 IstB-like ATP binding protein TQ29_19220 PF00403 Heavy-metal-associated domain TQ29_19225 PF02411 MerT mercuric transport protein TQ29_19230 PF13411 MerR HTH family regulatory protein TQ29_19250 PF04079 Segregation and condensation complex subunit ScpB TQ29_19260 PF01526 Tn3 transposase DDE domain TQ29_19260 PF13700 Domain of unknown function (DUF4158) TQ29_19265 PF02796 Helix-turn-helix domain of resolvase TQ29_19265 PF00239 Resolvase, N terminal domain TQ29_19270 PF00589 Phage integrase family TQ29_19275 PF03428 Replication protein C N-terminal domain TQ29_19275 PF11800 Replication protein C C-terminal region TQ29_19285 PF13614 AAA domain TQ29_19285 PF00376 MerR family regulatory protein TQ29_19295 PF05067 Manganese containing catalase TQ29_19320 PF13627 Prokaryotic lipoprotein-attachment site TQ29_19320 PF00080 Copper/zinc superoxide dismutase (SODC) TQ29_19330 PF00982 Glycosyltransferase family 20 TQ29_19340 PF03631 Virulence factor BrkB TQ29_19365 PF00128 Alpha amylase, catalytic domain TQ29_19425 PF01434 Peptidase family M41 TQ29_19425 PF17862 AAA+ lid domain TQ29_19425 PF00004 ATPase family associated with various cellular activities (AAA) TQ29_19440 PF00665 Integrase core domain TQ29_19465 PF01551 Peptidase family M23 TQ29_19465 PF10145 Phage-related minor tail protein TQ29_19465 PF01464 Transglycosylase SLT domain TQ29_19480 PF03135 CagE, TrbE, VirB family, component of type IV transporter system TQ29_19490 PF10145 Phage-related minor tail protein TQ29_19490 PF01464 Transglycosylase SLT domain TQ29_19490 PF01551 Peptidase family M23 TQ29_19510 PF03743 Bacterial conjugation TrbI-like protein TQ29_19515 PF00437 Type II/IV secretion system protein TQ29_19535 PF01545 Cation efflux family TQ29_19545 PF13700 Domain of unknown function (DUF4158) TQ29_19545 PF01526 Tn3 transposase DDE domain TQ29_19550 PF00239 Resolvase, N terminal domain TQ29_19550 PF02796 Helix-turn-helix domain of resolvase TQ29_19555 PF02534 Type IV secretory system Conjugative DNA transfer TQ29_19595 PF02384 N-6 DNA Methylase TQ29_19615 PF18766 SWI2/SNF2 ATPase TQ29_19615 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) TQ29_19615 PF11867 Domain of unknown function (DUF3387) TQ29_19620 PF05406 WGR domain TQ29_19695 PF00436 Single-strand binding protein family TQ29_19705 PF04945 YHS domain TQ29_19710 PF02424 ApbE family TQ29_19730 PF00175 Oxidoreductase NAD-binding domain TQ29_19730 PF00970 Oxidoreductase FAD-binding domain TQ29_19730 PF00111 2Fe-2S iron-sulfur cluster binding domain TQ29_19740 PF00072 Response regulator receiver domain TQ29_19740 PF00486 Transcriptional regulatory protein, C terminal TQ29_19745 PF00512 His Kinase A (phospho-acceptor) domain TQ29_19745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TQ29_19755 PF02195 ParB-like nuclease domain TQ29_19770 PF13614 AAA domain TQ29_19770 PF00376 MerR family regulatory protein TQ29_19775 PF00589 Phage integrase family TQ29_19785 PF04079 Segregation and condensation complex subunit ScpB TQ29_19805 PF07731 Multicopper oxidase TQ29_19805 PF07732 Multicopper oxidase TQ29_19810 PF02742 Iron dependent repressor, metal binding and dimerisation domain TQ29_19810 PF01325 Iron dependent repressor, N-terminal DNA binding domain TQ29_19820 PF07732 Multicopper oxidase TQ29_19820 PF07731 Multicopper oxidase TQ29_19835 PF13442 Cytochrome C oxidase, cbb3-type, subunit III TQ29_19835 PF00034 Cytochrome c TQ29_19835 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP TQ29_19850 PF00403 Heavy-metal-associated domain TQ29_19860 PF03734 L,D-transpeptidase catalytic domain TQ29_19870 PF01804 Penicillin amidase TQ29_19880 PF00795 Carbon-nitrogen hydrolase TQ29_19885 PF01252 Signal peptidase (SPase) II TQ29_19890 PF02535 ZIP Zinc transporter TQ29_19905 PF02630 SCO1/SenC TQ29_19915 PF13462 Thioredoxin TQ29_19915 PF06965 Na+/H+ antiporter 1 TQ29_19920 PF02600 Disulfide bond formation protein DsbB TQ29_19925 PF02630 SCO1/SenC TQ29_19930 PF13411 MerR HTH family regulatory protein TQ29_19945 PF01545 Cation efflux family TQ29_19960 PF02683 Cytochrome C biogenesis protein transmembrane region TQ29_19975 PF09278 MerR, DNA binding TQ29_19975 PF00376 MerR family regulatory protein TQ29_19980 PF00403 Heavy-metal-associated domain TQ29_20005 PF04945 YHS domain TQ29_20030 PF00171 Aldehyde dehydrogenase family TQ29_20050 PF01527 Transposase TQ29_20085 PF01464 Transglycosylase SLT domain TQ29_20085 PF10145 Phage-related minor tail protein TQ29_20085 PF01551 Peptidase family M23 TQ29_20105 PF01464 Transglycosylase SLT domain TQ29_20105 PF01551 Peptidase family M23 TQ29_20105 PF10145 Phage-related minor tail protein TQ29_20125 PF03743 Bacterial conjugation TrbI-like protein TQ29_20130 PF00437 Type II/IV secretion system protein TQ29_20160 PF02534 Type IV secretory system Conjugative DNA transfer TQ29_20165 PF03432 Relaxase/Mobilisation nuclease domain