locus-tag	class	description
TQ29_00025	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
TQ29_00030	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
TQ29_00055	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
TQ29_00065	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
TQ29_00070	COG1999	signal sequence binding
TQ29_00080	COG2205	protein histidine kinase activity
TQ29_00085	COG0802	atpase or kinase
TQ29_00090	COG3178	'Phosphotransferase
TQ29_00095	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
TQ29_00100	COG2887	Belongs to the helicase family. UvrD subfamily
TQ29_00105	COG1074	ATP-dependent DNA helicase activity
TQ29_00120	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
TQ29_00125	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
TQ29_00150	COG3030	protein affecting phage T7 exclusion by the F plasmid
TQ29_00165	COG0237	dephospho-CoA kinase activity
TQ29_00170	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
TQ29_00175	COG0424	maF-like protein
TQ29_00180	COG1981	membrane
TQ29_00185	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
TQ29_00190	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
TQ29_00195	COG0445	tRNA wobble uridine modification
TQ29_00200	COG0357	Ribosomal RNA small subunit methyltransferase G
TQ29_00220	COG0635	Involved in the biosynthesis of porphyrin-containing compound
TQ29_00225	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
TQ29_00230	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
TQ29_00235	COG1420	regulation of RNA biosynthetic process
TQ29_00240	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
TQ29_00245	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
TQ29_00250	COG0280	phosphate acetyltransferase
TQ29_00250	COG0281	malic enzyme
TQ29_00255	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
TQ29_00260	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
TQ29_00270	COG0137	argininosuccinate synthase activity
TQ29_00300	COG0617	tRNA 3'-terminal CCA addition
TQ29_00305	COG1132	(ABC) transporter
TQ29_00310	COG1132	(ABC) transporter
TQ29_00320	COG3034	peptidoglycan biosynthetic process
TQ29_00350	COG1040	competence protein
TQ29_00360	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TQ29_00370	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
TQ29_00380	COG0779	Required for maturation of 30S ribosomal subunits
TQ29_00395	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
TQ29_00400	COG0494	nUDIX hydrolase
TQ29_00405	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
TQ29_00410	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
TQ29_00415	COG0653	protein targeting
TQ29_00430	COG2003	Belongs to the UPF0758 family
TQ29_00440	COG0443	Heat shock 70 kDa protein
TQ29_00460	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
TQ29_00475	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
TQ29_00500	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
TQ29_00505	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
TQ29_00510	COG1137	ATPase activity
TQ29_00530	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TQ29_00585	COG1764	response to oxidative stress
TQ29_00590	COG1846	Transcriptional regulator
TQ29_00595	COG1064	alcohol dehydrogenase
TQ29_00615	COG1968	undecaprenyl-diphosphatase activity
TQ29_00640	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
TQ29_00645	COG0625	glutathione transferase activity
TQ29_00650	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
TQ29_00725	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
TQ29_00730	COG0297	glycogen (starch) synthase activity
TQ29_00785	COG1360	Flagellar Motor Protein
TQ29_00805	COG1706	bacterial-type flagellum-dependent cell motility
TQ29_00810	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
TQ29_00815	COG1338	Plays a role in the flagellum-specific transport system
TQ29_00820	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
TQ29_00830	COG1766	The M ring may be actively involved in energy transduction
TQ29_00850	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
TQ29_00865	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
TQ29_00890	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
TQ29_00900	COG4786	Flagellar basal body rod
TQ29_00905	COG4786	Flagellar basal body rod
TQ29_00910	COG1987	bacterial-type flagellum assembly
TQ29_00915	COG1677	Flagellar hook-basal body complex protein FliE
TQ29_00920	COG1558	bacterial-type flagellum-dependent cell motility
TQ29_00925	COG1815	bacterial-type flagellum-dependent cell motility
TQ29_00940	COG5443	negative regulation of bacterial-type flagellum assembly
TQ29_00970	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
TQ29_00980	COG2226	methyltransferase
TQ29_00985	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
TQ29_00995	COG0268	Binds directly to 16S ribosomal RNA
TQ29_01010	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
TQ29_01020	COG1280	lysine exporter protein (LysE YggA)
TQ29_01030	COG1054	Belongs to the UPF0176 family
TQ29_01040	COG1335	isochorismatase
TQ29_01045	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
TQ29_01060	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
TQ29_01065	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
TQ29_01085	COG0514	ATP-dependent DNA helicase (RecQ)
TQ29_01090	COG3022	response to hydroperoxide
TQ29_01105	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
TQ29_01115	COG0560	Phosphoserine phosphatase
TQ29_01115	COG3830	Belongs to the UPF0237 family
TQ29_01125	COG0820	rRNA (adenine-C2-)-methyltransferase activity
TQ29_01135	COG2171	N-acyltransferase activity
TQ29_01150	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
TQ29_01170	COG0557	exoribonuclease II activity
TQ29_01175	COG2951	lytic endotransglycosylase activity
TQ29_01180	COG1051	belongs to the nudix hydrolase family
TQ29_01185	COG0793	Belongs to the peptidase S41A family
TQ29_01195	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
TQ29_01200	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
TQ29_01205	COG0799	negative regulation of ribosome biogenesis
TQ29_01220	COG0747	negative chemotaxis
TQ29_01225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_01255	COG4608	Belongs to the ABC transporter superfamily
TQ29_01265	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_01280	COG3264	Mechanosensitive ion channel
TQ29_01280	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
TQ29_01285	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
TQ29_01295	COG0066	3-isopropylmalate dehydratase activity
TQ29_01310	COG0473	3-isopropylmalate dehydrogenase activity
TQ29_01315	COG0697	spore germination
TQ29_01335	COG0288	reversible hydration of carbon dioxide
TQ29_01345	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
TQ29_01350	COG0791	NLP P60 protein
TQ29_01370	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
TQ29_01375	COG3510	cephalosporin hydroxylase
TQ29_01380	COG1671	Belongs to the UPF0178 family
TQ29_01390	COG2423	ornithine cyclodeaminase activity
TQ29_01395	COG2267	carboxylic ester hydrolase activity
TQ29_01400	COG2271	Major facilitator Superfamily
TQ29_01405	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
TQ29_01410	COG0285	dihydrofolate synthase activity
TQ29_01415	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
TQ29_01425	COG0129	dihydroxy-acid dehydratase activity
TQ29_01445	COG0583	DNA-binding transcription factor activity
TQ29_01450	COG2885	chlorophyll binding
TQ29_01460	COG1058	Belongs to the CinA family
TQ29_01460	COG1546	Belongs to the CinA family
TQ29_01465	COG1489	DNA binding
TQ29_01470	COG0024	Methionine aminopeptidase
TQ29_01475	COG0742	ribosomal rna small subunit methyltransferase
TQ29_01485	COG0678	peroxiredoxin activity
TQ29_01490	COG0668	transmembrane transport
TQ29_01495	COG2154	pterin-4-alpha-carbinolamine dehydratase
TQ29_01515	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
TQ29_01540	COG0347	Belongs to the P(II) protein family
TQ29_01545	COG0004	ammonium transporteR
TQ29_01555	COG2897	thiosulfate sulfurtransferase activity
TQ29_01565	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
TQ29_01570	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
TQ29_01575	COG0741	lytic transglycosylase activity
TQ29_01585	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TQ29_01585	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
TQ29_01600	COG1346	cytolysis
TQ29_01635	COG0435	Glutathione S-transferase
TQ29_01645	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
TQ29_01650	COG0242	peptide deformylase activity
TQ29_01655	COG0242	peptide deformylase activity
TQ29_01660	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
TQ29_01670	COG0328	RNA-DNA hybrid ribonuclease activity
TQ29_01680	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
TQ29_01690	COG1758	RNA polymerase activity
TQ29_01705	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
TQ29_01710	COG0736	holo-[acyl-carrier-protein] synthase activity
TQ29_01715	COG0681	Belongs to the peptidase S26 family
TQ29_01720	COG0571	ribonuclease III activity
TQ29_01725	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
TQ29_01735	COG1381	Involved in DNA repair and RecF pathway recombination
TQ29_01755	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
TQ29_01760	COG0745	RESPONSE REGULATOR receiver
TQ29_01765	COG2205	protein histidine kinase activity
TQ29_01775	COG1660	Displays ATPase and GTPase activities
TQ29_01785	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
TQ29_01795	COG1250	3-hydroxyacyl-CoA dehydrogenase
TQ29_01815	COG2096	Adenosyltransferase
TQ29_01825	COG0300	oxidoreductase activity
TQ29_01835	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
TQ29_01845	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
TQ29_01870	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
TQ29_01875	COG0081	regulation of translation
TQ29_01880	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
TQ29_01885	COG0222	ribosome binding
TQ29_01890	COG0085	RNA polymerase activity
TQ29_01900	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
TQ29_01905	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
TQ29_01910	COG0049	tRNA binding
TQ29_01915	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
TQ29_01920	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
TQ29_01925	COG0051	transcription antitermination factor activity, RNA binding
TQ29_01930	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
TQ29_01935	COG0088	Forms part of the polypeptide exit tunnel
TQ29_01940	COG0089	rRNA binding
TQ29_01945	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
TQ29_01950	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
TQ29_01955	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
TQ29_01960	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
TQ29_01965	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
TQ29_01975	COG0255	Belongs to the universal ribosomal protein uL29 family
TQ29_01980	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
TQ29_01985	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
TQ29_01990	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
TQ29_01995	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
TQ29_02000	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
TQ29_02005	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
TQ29_02010	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
TQ29_02015	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
TQ29_02020	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
TQ29_02025	COG1841	ribosomal large subunit assembly
TQ29_02030	COG0200	Binds to the 23S rRNA
TQ29_02035	COG0201	protein transport
TQ29_02040	COG0563	adenylate kinase activity
TQ29_02050	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
TQ29_02055	COG0202	RNA polymerase activity
TQ29_02060	COG0203	ribosomal protein L17
TQ29_02080	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
TQ29_02085	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
TQ29_02095	COG0564	pseudouridine synthase activity
TQ29_02100	COG0546	phosphoglycolate phosphatase activity
TQ29_02110	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
TQ29_02115	COG4597	amino acid ABC transporter
TQ29_02120	COG0765	amino acid transport
TQ29_02125	COG1126	abc transporter atp-binding protein
TQ29_02150	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
TQ29_02155	COG0218	Necessary for normal cell division and for the maintenance of normal septation
TQ29_02165	COG0706	membrane insertase activity
TQ29_02170	COG5001	Diguanylate cyclase
TQ29_02170	COG4251	negative regulation of phosphorylation
TQ29_02170	COG3706	GGDEF domain
TQ29_02170	COG2203	Gaf domain
TQ29_02175	COG0037	tRNA processing
TQ29_02180	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
TQ29_02185	COG0594	ribonuclease P activity
TQ29_02190	COG0230	Belongs to the bacterial ribosomal protein bL34 family
TQ29_02200	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
TQ29_02225	COG2201	protein-glutamate methylesterase activity
TQ29_02260	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
TQ29_02310	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TQ29_02330	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
TQ29_02335	COG1643	Atp-dependent helicase
TQ29_02340	COG1703	isobutyryl-CoA mutase activity
TQ29_02360	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
TQ29_02390	COG1802	Transcriptional regulator
TQ29_02405	COG0508	dehydrogenase complex catalyzes the overall conversion of
TQ29_02410	COG0567	Dehydrogenase, E1 component
TQ29_02425	COG0045	succinate-CoA ligase (ADP-forming) activity
TQ29_02430	COG0039	L-malate dehydrogenase activity
TQ29_02440	COG2301	Belongs to the HpcH HpaI aldolase family
TQ29_02455	COG2030	dehydratase
TQ29_02490	COG0667	Aldo Keto reductase
TQ29_02495	COG0813	purine-nucleoside phosphorylase activity
TQ29_02505	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
TQ29_02505	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
TQ29_02510	COG0604	alcohol dehydrogenase
TQ29_02530	COG0730	response to heat
TQ29_02535	COG1079	Belongs to the binding-protein-dependent transport system permease family
TQ29_02545	COG3845	ABC transporter
TQ29_02550	COG1744	ABC transporter substrate-binding protein PnrA-like
TQ29_02565	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
TQ29_02580	COG2514	catechol 2,3-dioxygenase activity
TQ29_02585	COG0180	Tryptophanyl-tRNA synthetase
TQ29_02595	COG0728	peptidoglycan biosynthetic process
TQ29_02600	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
TQ29_02610	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
TQ29_02625	COG0657	acetylesterase activity
TQ29_02630	COG0606	chelatase, subunit chli
TQ29_02650	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
TQ29_02660	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
TQ29_02665	COG0339	signal peptide processing
TQ29_02690	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
TQ29_02705	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
TQ29_02715	COG1079	Belongs to the binding-protein-dependent transport system permease family
TQ29_02720	COG4603	Belongs to the binding-protein-dependent transport system permease family
TQ29_02725	COG3845	ABC transporter
TQ29_02735	COG1529	Aldehyde oxidase and xanthine dehydrogenase
TQ29_02770	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
TQ29_02775	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
TQ29_02785	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
TQ29_02800	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
TQ29_02810	COG0701	Predicted permease
TQ29_02815	COG2862	Uncharacterized protein family, UPF0114
TQ29_02820	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
TQ29_02825	COG0287	Prephenate dehydrogenase
TQ29_02855	COG1857	crispr-associated protein
TQ29_02870	COG1518	maintenance of DNA repeat elements
TQ29_02875	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
TQ29_02890	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TQ29_02895	COG1522	sequence-specific DNA binding
TQ29_02915	COG0559	Belongs to the binding-protein-dependent transport system permease family
TQ29_02945	COG1079	Belongs to the binding-protein-dependent transport system permease family
TQ29_02975	COG0667	Aldo Keto reductase
TQ29_02980	COG2186	Transcriptional regulator
TQ29_02990	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
TQ29_03010	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TQ29_03020	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
TQ29_03030	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
TQ29_03035	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
TQ29_03040	COG0355	proton-transporting ATP synthase activity, rotational mechanism
TQ29_03065	COG2983	Belongs to the UPF0260 family
TQ29_03070	COG0196	riboflavin kinase activity
TQ29_03075	COG2030	dehydratase
TQ29_03085	COG1227	inorganic diphosphatase activity
TQ29_03095	COG0459	protein refolding
TQ29_03120	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
TQ29_03125	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
TQ29_03150	COG2046	Belongs to the sulfate adenylyltransferase family
TQ29_03150	COG0529	Catalyzes the synthesis of activated sulfate
TQ29_03155	COG0492	ferredoxin-NADP+ reductase activity
TQ29_03160	COG1522	sequence-specific DNA binding
TQ29_03170	COG1496	oxidoreductase activity
TQ29_03180	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
TQ29_03200	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TQ29_03230	COG0667	Aldo Keto reductase
TQ29_03265	COG1595	DNA-templated transcription, initiation
TQ29_03325	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
TQ29_03340	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TQ29_03345	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
TQ29_03350	COG3237	CsbD-like
TQ29_03355	COG1435	thymidine kinase activity
TQ29_03365	COG0513	Belongs to the DEAD box helicase family
TQ29_03370	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
TQ29_03385	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
TQ29_03390	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
TQ29_03415	COG0346	lactoylglutathione lyase activity
TQ29_03430	COG0778	Nitroreductase
TQ29_03435	COG1872	DUF167
TQ29_03470	COG2824	Alkylphosphonate utilization operon protein PhnA
TQ29_03480	COG3038	cytochrome b561
TQ29_03500	COG4303	Ethanolamine ammonia lyase large subunit
TQ29_03505	COG1177	transmembrane transport
TQ29_03515	COG3842	ATPase activity
TQ29_03525	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
TQ29_03530	COG4221	oxidoreductase activity
TQ29_03535	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
TQ29_03550	COG3119	arylsulfatase activity
TQ29_03590	COG4608	Belongs to the ABC transporter superfamily
TQ29_03595	COG0444	Belongs to the ABC transporter superfamily
TQ29_03605	COG0747	negative chemotaxis
TQ29_03615	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
TQ29_03625	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
TQ29_03650	COG1047	Peptidyl-prolyl cis-trans
TQ29_03660	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
TQ29_03665	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
TQ29_03670	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
TQ29_03690	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TQ29_03705	COG1702	phosphate starvation-inducible protein PhoH
TQ29_03710	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
TQ29_03715	COG1253	flavin adenine dinucleotide binding
TQ29_03720	COG0815	Transfers the fatty acyl group on membrane lipoproteins
TQ29_03725	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
TQ29_03730	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
TQ29_03735	COG0220	tRNA (guanine-N7-)-methyltransferase activity
TQ29_03740	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
TQ29_03745	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
TQ29_03755	COG0539	negative regulation of cytoplasmic translation
TQ29_03760	COG0776	regulation of translation
TQ29_03770	COG0135	phosphoribosylanthranilate isomerase activity
TQ29_03780	COG0133	tryptophan synthase activity
TQ29_03815	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
TQ29_03835	COG1304	FMN binding
TQ29_03845	COG1247	-acetyltransferase
TQ29_03850	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
TQ29_03865	COG0248	Ppx GppA phosphatase
TQ29_03870	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
TQ29_03880	COG0628	permease
TQ29_03885	COG0442	prolyl-tRNA aminoacylation
TQ29_03895	COG1136	(ABC) transporter
TQ29_03920	COG0187	DNA topoisomerase II activity
TQ29_03925	COG2326	polyphosphate kinase activity
TQ29_03935	COG0534	Mate efflux family protein
TQ29_03960	COG1846	Transcriptional regulator
TQ29_03985	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
TQ29_04005	COG1278	Cold shock
TQ29_04010	COG1393	Belongs to the ArsC family
TQ29_04025	COG3220	belongs to the UPF0276 family
TQ29_04035	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
TQ29_04040	COG0525	valine-tRNA ligase activity
TQ29_04075	COG0483	inositol monophosphate 1-phosphatase activity
TQ29_04095	COG1215	transferase activity, transferring glycosyl groups
TQ29_04115	COG1305	Transglutaminase-like
TQ29_04130	COG1116	anion transmembrane transporter activity
TQ29_04135	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TQ29_04140	COG0402	S-adenosylhomocysteine deaminase activity
TQ29_04150	COG2249	NAD(P)H dehydrogenase (quinone) activity
TQ29_04155	COG2249	NAD(P)H dehydrogenase (quinone) activity
TQ29_04175	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
TQ29_04190	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
TQ29_04195	COG3707	response regulator
TQ29_04200	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TQ29_04205	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TQ29_04210	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TQ29_04215	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TQ29_04215	COG1116	anion transmembrane transporter activity
TQ29_04225	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
TQ29_04235	COG0243	molybdopterin cofactor binding
TQ29_04240	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
TQ29_04245	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
TQ29_04245	COG1648	precorrin-2 dehydrogenase activity
TQ29_04270	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_04275	COG0596	Alpha beta hydrolase
TQ29_04290	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
TQ29_04300	COG2204	response regulator
TQ29_04305	COG5002	protein histidine kinase activity
TQ29_04305	COG0784	Response regulator, receiver
TQ29_04305	COG2198	Histidine kinase
TQ29_04315	COG0280	phosphate acetyltransferase
TQ29_04315	COG0281	malic enzyme
TQ29_04325	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
TQ29_04330	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
TQ29_04335	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
TQ29_04340	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
TQ29_04355	COG0318	PFAM AMP-dependent synthetase and ligase
TQ29_04365	COG1250	3-hydroxyacyl-CoA dehydrogenase
TQ29_04365	COG1024	Enoyl-CoA hydratase
TQ29_04375	COG0183	Belongs to the thiolase family
TQ29_04380	COG0625	glutathione transferase activity
TQ29_04390	COG1960	acyl-CoA dehydrogenase activity
TQ29_04420	COG0534	Mate efflux family protein
TQ29_04430	COG0167	dihydroorotate dehydrogenase activity
TQ29_04440	COG0737	Belongs to the 5'-nucleotidase family
TQ29_04445	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
TQ29_04455	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
TQ29_04465	COG0318	PFAM AMP-dependent synthetase and ligase
TQ29_04470	COG1652	LysM domain
TQ29_04475	COG1132	(ABC) transporter
TQ29_04485	COG2814	Major facilitator Superfamily
TQ29_04490	COG1846	Transcriptional regulator
TQ29_04505	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
TQ29_04510	COG1744	ABC transporter substrate-binding protein PnrA-like
TQ29_04515	COG3845	ABC transporter
TQ29_04520	COG4603	Belongs to the binding-protein-dependent transport system permease family
TQ29_04525	COG1079	Belongs to the binding-protein-dependent transport system permease family
TQ29_04545	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
TQ29_04565	COG1172	Belongs to the binding-protein-dependent transport system permease family
TQ29_04570	COG0559	Belongs to the binding-protein-dependent transport system permease family
TQ29_04585	COG1305	Transglutaminase-like
TQ29_04595	COG2308	Evidence 4 Homologs of previously reported genes of
TQ29_04600	COG1490	D-aminoacyl-tRNA deacylase activity
TQ29_04610	COG0071	Belongs to the small heat shock protein (HSP20) family
TQ29_04630	COG3853	Toxic anion resistance protein (TelA)
TQ29_04640	COG0861	Integral membrane protein TerC family
TQ29_04645	COG1187	pseudouridine synthase activity
TQ29_04650	COG0590	tRNA wobble adenosine to inosine editing
TQ29_04655	COG0583	DNA-binding transcription factor activity
TQ29_04665	COG0670	Belongs to the BI1 family
TQ29_04670	COG3791	Glutathione-dependent formaldehyde-activating
TQ29_04675	COG0267	Belongs to the bacterial ribosomal protein bL33 family
TQ29_04680	COG3023	N-Acetylmuramoyl-L-alanine amidase
TQ29_04690	COG0154	amidase activity
TQ29_04710	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
TQ29_04715	COG0604	alcohol dehydrogenase
TQ29_04715	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_04715	COG3321	synthase
TQ29_04720	COG1396	sequence-specific DNA binding
TQ29_04725	COG0483	inositol monophosphate 1-phosphatase activity
TQ29_04755	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
TQ29_04770	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
TQ29_04805	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
TQ29_04810	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
TQ29_04835	COG5420	small protein containing a coiled-coil domain
TQ29_04860	COG1104	cysteine desulfurase activity
TQ29_04880	COG2086	electron transfer activity
TQ29_04885	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
TQ29_04890	COG0644	oxidoreductase
TQ29_04895	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
TQ29_04900	COG0725	ABC transporter, periplasmic molybdate-binding protein
TQ29_04905	COG4149	molybdate abc transporter
TQ29_04935	COG0583	DNA-binding transcription factor activity
TQ29_04950	COG1079	Belongs to the binding-protein-dependent transport system permease family
TQ29_04955	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TQ29_04960	COG1335	isochorismatase
TQ29_04965	COG3845	ABC transporter
TQ29_04980	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
TQ29_04990	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
TQ29_05025	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
TQ29_05035	COG2226	methyltransferase
TQ29_05050	COG1216	Glycosyl transferase, family 2
TQ29_05055	COG0463	Glycosyl transferase, family 2
TQ29_05080	COG0438	transferase activity, transferring glycosyl groups
TQ29_05110	COG2226	methyltransferase
TQ29_05115	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
TQ29_05155	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
TQ29_05160	COG0101	tRNA pseudouridine synthase activity
TQ29_05165	COG3106	COG3106 Predicted ATPase
TQ29_05170	COG3768	UPF0283 membrane protein
TQ29_05175	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
TQ29_05190	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
TQ29_05205	COG1595	DNA-templated transcription, initiation
TQ29_05215	COG2391	methyltransferase activity
TQ29_05225	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
TQ29_05230	COG0563	adenylate kinase activity
TQ29_05235	COG2264	protein methyltransferase activity
TQ29_05255	COG0632	four-way junction helicase activity
TQ29_05260	COG2255	four-way junction helicase activity
TQ29_05270	COG0824	Thioesterase
TQ29_05295	COG2885	chlorophyll binding
TQ29_05305	COG0037	tRNA processing
TQ29_05310	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
TQ29_05320	COG2759	Belongs to the formate--tetrahydrofolate ligase family
TQ29_05330	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
TQ29_05345	COG1201	RNA secondary structure unwinding
TQ29_05400	COG4964	Belongs to the GSP D family
TQ29_05440	COG1754	DNA topoisomerase type I activity
TQ29_05440	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
TQ29_05445	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
TQ29_05445	COG0758	DNA mediated transformation
TQ29_05450	COG0312	modulator of DNA gyrase
TQ29_05470	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
TQ29_05490	COG0612	Peptidase, M16
TQ29_05515	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
TQ29_05520	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
TQ29_05525	COG0659	secondary active sulfate transmembrane transporter activity
TQ29_05545	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TQ29_05550	COG0527	aspartate kinase activity
TQ29_05555	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_05570	COG0386	Belongs to the glutathione peroxidase family
TQ29_05580	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
TQ29_05595	COG4251	negative regulation of phosphorylation
TQ29_05630	COG0633	Ferredoxin
TQ29_05640	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_05645	COG1012	belongs to the aldehyde dehydrogenase family
TQ29_05675	COG1012	belongs to the aldehyde dehydrogenase family
TQ29_05695	COG2186	Transcriptional regulator
TQ29_05705	COG2186	Transcriptional regulator
TQ29_05725	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
TQ29_05735	COG1804	L-carnitine dehydratase bile acid-inducible protein F
TQ29_05740	COG1804	L-carnitine dehydratase bile acid-inducible protein F
TQ29_05775	COG0583	DNA-binding transcription factor activity
TQ29_05780	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
TQ29_05790	COG3485	protocatechuate 3,4-dioxygenase
TQ29_05795	COG3485	protocatechuate 3,4-dioxygenase
TQ29_05800	COG3246	L-lysine catabolic process to acetate
TQ29_05805	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
TQ29_05820	COG1278	Cold shock
TQ29_05835	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
TQ29_05840	COG1832	CoA-binding protein
TQ29_05845	COG0140	phosphoribosyl-ATP diphosphatase activity
TQ29_05850	COG0107	imidazoleglycerol-phosphate synthase activity
TQ29_05855	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
TQ29_05860	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
TQ29_05870	COG0131	Imidazoleglycerol-phosphate dehydratase
TQ29_05875	COG2202	Pas domain
TQ29_05875	COG2205	protein histidine kinase activity
TQ29_05885	COG5002	protein histidine kinase activity
TQ29_05890	COG0745	RESPONSE REGULATOR receiver
TQ29_05910	COG0861	Integral membrane protein TerC family
TQ29_05920	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
TQ29_05925	COG0210	DNA helicase
TQ29_05940	COG0489	protein tyrosine kinase activity
TQ29_05945	COG2001	Belongs to the MraZ family
TQ29_05950	COG0275	rRNA processing
TQ29_05965	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
TQ29_05970	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
TQ29_05975	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
TQ29_05980	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
TQ29_05985	COG0039	L-malate dehydrogenase activity
TQ29_05995	COG3119	arylsulfatase activity
TQ29_06005	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
TQ29_06010	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
TQ29_06015	COG0531	amino acid
TQ29_06035	COG0812	UDP-N-acetylmuramate dehydrogenase activity
TQ29_06040	COG1181	Belongs to the D-alanine--D-alanine ligase family
TQ29_06045	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
TQ29_06055	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
TQ29_06060	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
TQ29_06065	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TQ29_06085	COG0006	proline dipeptidase activity
TQ29_06095	COG1525	nuclease
TQ29_06125	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
TQ29_06135	COG0484	heat shock protein binding
TQ29_06150	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
TQ29_06170	COG0308	aminopeptidase N
TQ29_06180	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
TQ29_06190	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
TQ29_06220	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
TQ29_06250	COG1473	amidohydrolase
TQ29_06260	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
TQ29_06280	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
TQ29_06285	COG0546	phosphoglycolate phosphatase activity
TQ29_06290	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
TQ29_06310	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TQ29_06315	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TQ29_06375	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
TQ29_06380	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
TQ29_06395	COG0713	ATP synthesis coupled electron transport
TQ29_06420	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
TQ29_06430	COG0513	Belongs to the DEAD box helicase family
TQ29_06440	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
TQ29_06450	COG1192	Involved in chromosome partitioning
TQ29_06465	COG3842	ATPase activity
TQ29_06475	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
TQ29_06485	COG0805	protein transport
TQ29_06500	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
TQ29_06510	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_06515	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
TQ29_06520	COG1286	toxin biosynthetic process
TQ29_06535	COG1127	ABC transporter
TQ29_06540	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
TQ29_06550	COG0305	Participates in initiation and elongation during chromosome replication
TQ29_06560	COG0418	dihydroorotase activity
TQ29_06565	COG0829	nickel cation binding
TQ29_06570	COG0831	urea catabolic process
TQ29_06575	COG0832	Belongs to the urease beta subunit family
TQ29_06590	COG0804	urea catabolic process
TQ29_06600	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
TQ29_06610	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
TQ29_06625	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
TQ29_06645	COG1280	lysine exporter protein (LysE YggA)
TQ29_06660	COG0577	efflux transmembrane transporter activity
TQ29_06660	COG1136	(ABC) transporter
TQ29_06665	COG0577	efflux transmembrane transporter activity
TQ29_06665	COG1136	(ABC) transporter
TQ29_06670	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
TQ29_06685	COG1522	sequence-specific DNA binding
TQ29_06720	COG2197	response regulator
TQ29_06775	COG4264	IucA IucC family
TQ29_06810	COG0765	amino acid transport
TQ29_06815	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
TQ29_06820	COG0765	amino acid transport
TQ29_06835	COG2146	nitrite reductase [NAD(P)H] activity
TQ29_06860	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
TQ29_06870	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
TQ29_06870	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
TQ29_06880	COG3676	manually curated
TQ29_06895	COG0356	it plays a direct role in the translocation of protons across the membrane
TQ29_06930	COG0584	glycerophosphoryl diester phosphodiesterase
TQ29_06965	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
TQ29_06970	COG1737	Transcriptional regulator
TQ29_06980	COG3550	peptidyl-serine autophosphorylation
TQ29_06985	COG3620	sequence-specific DNA binding
TQ29_06995	COG4372	Transposase
TQ29_07000	COG3436	PFAM IS66 Orf2 family protein
TQ29_07005	COG2963	transposase activity
TQ29_07015	COG0464	growth
TQ29_07040	COG3328	transposase activity
TQ29_07060	COG1475	DNA binding
TQ29_07090	COG0629	single-stranded DNA binding
TQ29_07195	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
TQ29_07205	COG2963	transposase activity
TQ29_07215	COG4372	Transposase
TQ29_07240	COG4962	Type ii secretion system protein e
TQ29_07255	COG3451	type IV secretory pathway VirB4
TQ29_07270	COG3846	protein secretion by the type IV secretion system
TQ29_07300	COG3550	peptidyl-serine autophosphorylation
TQ29_07340	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
TQ29_07345	COG0730	response to heat
TQ29_07350	COG1233	COG1233 Phytoene dehydrogenase and related
TQ29_07360	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
TQ29_07365	COG4235	cytochrome complex assembly
TQ29_07370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TQ29_07380	COG0404	The glycine cleavage system catalyzes the degradation of glycine
TQ29_07380	COG0446	pyridine nucleotide-disulphide oxidoreductase
TQ29_07410	COG5265	(ABC) transporter
TQ29_07430	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TQ29_07435	COG1160	GTP binding
TQ29_07440	COG0129	dihydroxy-acid dehydratase activity
TQ29_07490	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
TQ29_07495	COG0010	Belongs to the arginase family
TQ29_07505	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
TQ29_07510	COG2890	protein-(glutamine-N5) methyltransferase activity
TQ29_07520	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
TQ29_07525	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
TQ29_07530	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
TQ29_07535	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
TQ29_07545	COG0795	lipopolysaccharide-transporting ATPase activity
TQ29_07550	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
TQ29_07560	COG3577	Aspartyl protease
TQ29_07565	COG2095	MarC family integral membrane protein
TQ29_07570	COG0488	(ABC) transporter
TQ29_07575	COG0105	UTP biosynthetic process
TQ29_07585	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
TQ29_07615	COG0837	glucose binding
TQ29_07620	COG0316	Belongs to the HesB IscA family
TQ29_07625	COG0232	Belongs to the dGTPase family. Type 2 subfamily
TQ29_07635	COG0018	arginyl-trna synthetase
TQ29_07645	COG1472	Belongs to the glycosyl hydrolase 3 family
TQ29_07650	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
TQ29_07655	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
TQ29_07665	COG0717	Belongs to the dCTP deaminase family
TQ29_07680	COG0776	regulation of translation
TQ29_07685	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
TQ29_07690	COG0416	fatty acid biosynthetic process
TQ29_07695	COG0333	Belongs to the bacterial ribosomal protein bL32 family
TQ29_07710	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
TQ29_07720	COG0488	(ABC) transporter
TQ29_07745	COG0215	cysteine-tRNA ligase activity
TQ29_07750	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TQ29_07770	COG2814	Major facilitator Superfamily
TQ29_07775	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
TQ29_07795	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
TQ29_07805	COG0166	Belongs to the GPI family
TQ29_07830	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
TQ29_07840	COG0248	Ppx GppA phosphatase
TQ29_07845	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
TQ29_07850	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
TQ29_07860	COG1752	Esterase of the alpha-beta hydrolase superfamily
TQ29_07865	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
TQ29_07890	COG0444	Belongs to the ABC transporter superfamily
TQ29_07895	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_07900	COG0601	transmembrane transport
TQ29_07905	COG4166	transmembrane transport
TQ29_07915	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
TQ29_07920	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TQ29_07925	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TQ29_07935	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
TQ29_07975	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
TQ29_08040	COG0544	peptidyl-prolyl cis-trans isomerase activity
TQ29_08045	COG0359	binds to the 23S rRNA
TQ29_08050	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
TQ29_08055	COG0360	Binds together with S18 to 16S ribosomal RNA
TQ29_08075	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
TQ29_08085	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
TQ29_08090	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
TQ29_08095	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
TQ29_08110	COG4695	Portal protein
TQ29_08205	COG0508	dehydrogenase complex catalyzes the overall conversion of
TQ29_08210	COG0022	dehydrogenase e1 component
TQ29_08210	COG0508	dehydrogenase complex catalyzes the overall conversion of
TQ29_08215	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
TQ29_08220	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
TQ29_08225	COG1830	Aldolase
TQ29_08230	COG0126	phosphoglycerate kinase activity
TQ29_08250	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
TQ29_08255	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
TQ29_08265	COG0148	phosphopyruvate hydratase activity
TQ29_08300	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
TQ29_08315	COG1840	ABC-type Fe3 transport system, periplasmic component
TQ29_08320	COG3956	TIGRFAM MazG family protein
TQ29_08330	COG2081	HI0933 family
TQ29_08335	COG0745	RESPONSE REGULATOR receiver
TQ29_08340	COG0784	Response regulator, receiver
TQ29_08340	COG2198	Histidine kinase
TQ29_08340	COG2205	protein histidine kinase activity
TQ29_08360	COG0411	ABC transporter
TQ29_08415	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
TQ29_08435	COG0433	COG0433 Predicted ATPase
TQ29_08440	COG4536	flavin adenine dinucleotide binding
TQ29_08445	COG4974	Belongs to the 'phage' integrase family
TQ29_08455	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
TQ29_08460	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
TQ29_08470	COG1994	Peptidase M50
TQ29_08470	COG0517	IMP dehydrogenase activity
TQ29_08475	COG0629	single-stranded DNA binding
TQ29_08485	COG0741	lytic transglycosylase activity
TQ29_08485	COG0739	heme binding
TQ29_08485	COG1196	nuclear chromosome segregation
TQ29_08490	COG2329	Antibiotic biosynthesis monooxygenase
TQ29_08495	COG0697	spore germination
TQ29_08505	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_08510	COG0601	transmembrane transport
TQ29_08515	COG4166	transmembrane transport
TQ29_08530	COG0528	UMP kinase activity
TQ29_08535	COG0233	cytoplasmic translational termination
TQ29_08540	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
TQ29_08550	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
TQ29_08555	COG0750	zinc metalloprotease
TQ29_08560	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TQ29_08570	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
TQ29_08575	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
TQ29_08580	COG3494	Protein of unknown function (DUF1009)
TQ29_08585	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
TQ29_08590	COG0482	sulfurtransferase activity
TQ29_08605	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
TQ29_08610	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
TQ29_08620	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
TQ29_08625	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
TQ29_08630	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
TQ29_08635	COG2259	Doxx family
TQ29_08640	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
TQ29_08645	COG5425	PFAM Usg family protein
TQ29_08655	COG1238	metal cluster binding
TQ29_08660	COG2321	neutral zinc metallopeptidase
TQ29_08715	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
TQ29_08725	COG1561	YicC-like family, N-terminal region
TQ29_08730	COG0194	GDP metabolic process
TQ29_08745	COG5002	protein histidine kinase activity
TQ29_08755	COG0573	inorganic phosphate transmembrane transporter activity
TQ29_08765	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TQ29_08775	COG0745	RESPONSE REGULATOR receiver
TQ29_08780	COG2197	response regulator
TQ29_08785	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
TQ29_08790	COG0052	Belongs to the universal ribosomal protein uS2 family
TQ29_08795	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
TQ29_08795	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
TQ29_08800	COG2313	pseudouridylate synthase activity
TQ29_08820	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_08825	COG4166	transmembrane transport
TQ29_08855	COG2814	Major facilitator Superfamily
TQ29_08860	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
TQ29_08885	COG2124	cytochrome p450
TQ29_08895	COG0785	Cytochrome C biogenesis protein
TQ29_08905	COG1530	ribonuclease E activity
TQ29_08910	COG2204	response regulator
TQ29_08920	COG0047	phosphoribosylformylglycinamidine synthase activity
TQ29_08925	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TQ29_08940	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
TQ29_08955	COG1410	methionine synthase
TQ29_08955	COG0646	methionine synthase
TQ29_08965	COG5012	cobalamin binding
TQ29_08975	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
TQ29_08980	COG1923	regulation of RNA biosynthetic process
TQ29_08990	COG0569	domain protein
TQ29_08995	COG2204	response regulator
TQ29_09000	COG5000	phosphorelay sensor kinase activity
TQ29_09005	COG2204	response regulator
TQ29_09010	COG3852	Histidine kinase
TQ29_09015	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
TQ29_09020	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
TQ29_09020	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
TQ29_09030	COG1058	Belongs to the CinA family
TQ29_09030	COG1546	Belongs to the CinA family
TQ29_09035	COG2867	negative regulation of translational initiation
TQ29_09040	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
TQ29_09050	COG4608	Belongs to the ABC transporter superfamily
TQ29_09055	COG0444	Belongs to the ABC transporter superfamily
TQ29_09060	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_09065	COG0601	transmembrane transport
TQ29_09080	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
TQ29_09085	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
TQ29_09095	COG0784	Response regulator, receiver
TQ29_09100	COG2202	Pas domain
TQ29_09100	COG2205	protein histidine kinase activity
TQ29_09110	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
TQ29_09110	COG2066	Belongs to the glutaminase family
TQ29_09140	COG0753	catalase activity
TQ29_09150	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
TQ29_09160	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
TQ29_09175	COG0719	Fe-S assembly protein
TQ29_09180	COG0396	ATPase activity
TQ29_09190	COG0393	Putative heavy-metal-binding
TQ29_09195	COG0719	Fe-S assembly protein
TQ29_09205	COG1959	2 iron, 2 sulfur cluster binding
TQ29_09210	COG2945	thiolester hydrolase activity
TQ29_09220	COG0538	isocitrate dehydrogenase activity
TQ29_09240	COG1217	gtp-binding protein TYPA
TQ29_09250	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
TQ29_09260	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
TQ29_09265	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
TQ29_09280	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
TQ29_09280	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
TQ29_09285	COG0517	IMP dehydrogenase activity
TQ29_09285	COG0516	GMP reductase activity
TQ29_09295	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
TQ29_09310	COG2010	Cytochrome c
TQ29_09315	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
TQ29_09330	COG0753	catalase activity
TQ29_09360	COG0518	GMP synthase (glutamine-hydrolyzing) activity
TQ29_09360	COG0519	Catalyzes the synthesis of GMP from XMP
TQ29_09375	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
TQ29_09380	COG2326	polyphosphate kinase activity
TQ29_09405	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
TQ29_09410	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
TQ29_09425	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
TQ29_09430	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
TQ29_09450	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
TQ29_09455	COG1612	heme a metabolic process
TQ29_09490	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
TQ29_09495	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
TQ29_09500	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
TQ29_09510	COG0211	Belongs to the bacterial ribosomal protein bL27 family
TQ29_09515	COG3743	rRNA binding
TQ29_09515	COG0261	This protein binds to 23S rRNA in the presence of protein L20
TQ29_09545	COG0783	Belongs to the Dps family
TQ29_09550	COG0450	alkyl hydroperoxide reductase
TQ29_09560	COG4608	Belongs to the ABC transporter superfamily
TQ29_09565	COG0444	Belongs to the ABC transporter superfamily
TQ29_09570	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_09575	COG0601	transmembrane transport
TQ29_09580	COG0747	negative chemotaxis
TQ29_09590	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
TQ29_09595	COG1012	belongs to the aldehyde dehydrogenase family
TQ29_09600	COG1522	sequence-specific DNA binding
TQ29_09610	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TQ29_09615	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
TQ29_09620	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TQ29_09625	COG0589	response to stress
TQ29_09635	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
TQ29_09640	COG2423	ornithine cyclodeaminase activity
TQ29_09645	COG0006	proline dipeptidase activity
TQ29_09650	COG3608	succinylglutamate desuccinylase aspartoacylase
TQ29_09660	COG2943	transferase activity, transferring hexosyl groups
TQ29_09670	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
TQ29_09685	COG1846	Transcriptional regulator
TQ29_09690	COG1764	response to oxidative stress
TQ29_09695	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
TQ29_09710	COG0351	phosphomethylpyrimidine kinase
TQ29_09725	COG2022	thiamine diphosphate biosynthetic process
TQ29_09735	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
TQ29_09740	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TQ29_09745	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
TQ29_09750	COG1116	anion transmembrane transporter activity
TQ29_09755	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TQ29_09790	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
TQ29_09795	COG0842	Transport permease protein
TQ29_09795	COG1129	ABC transporter
TQ29_09800	COG0842	Transport permease protein
TQ29_09805	COG0640	Transcriptional regulator
TQ29_09825	COG1902	pentaerythritol trinitrate reductase activity
TQ29_09825	COG0446	pyridine nucleotide-disulphide oxidoreductase
TQ29_09850	COG1349	DNA-binding transcription factor activity
TQ29_09865	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
TQ29_09915	COG0556	nucleotide-excision repair
TQ29_09965	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
TQ29_09980	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
TQ29_09995	COG0488	(ABC) transporter
TQ29_10005	COG3118	belongs to the thioredoxin family
TQ29_10015	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
TQ29_10015	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
TQ29_10025	COG0509	glycine decarboxylation via glycine cleavage system
TQ29_10030	COG0404	The glycine cleavage system catalyzes the degradation of glycine
TQ29_10040	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
TQ29_10055	COG0655	NAD(P)H dehydrogenase (quinone) activity
TQ29_10070	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TQ29_10090	COG0768	penicillin binding
TQ29_10095	COG0772	Belongs to the SEDS family
TQ29_10100	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
TQ29_10110	COG1573	uracil-dna glycosylase
TQ29_10125	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
TQ29_10140	COG2877	3-deoxy-8-phosphooctulonate synthase activity
TQ29_10160	COG2801	Transposase and inactivated derivatives
TQ29_10160	COG3415	Transposase
TQ29_10165	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
TQ29_10175	COG4608	Belongs to the ABC transporter superfamily
TQ29_10180	COG0444	Belongs to the ABC transporter superfamily
TQ29_10185	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_10195	COG4166	transmembrane transport
TQ29_10205	COG4948	Mandelate Racemase Muconate Lactonizing
TQ29_10210	COG0154	amidase activity
TQ29_10240	COG0683	leucine binding
TQ29_10255	COG1609	Transcriptional regulator
TQ29_10265	COG3842	ATPase activity
TQ29_10270	COG3833	ABC-type maltose transport systems, permease component
TQ29_10285	COG0456	acetyltransferase
TQ29_10325	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
TQ29_10340	COG1917	Cupin 2, conserved barrel domain protein
TQ29_10345	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
TQ29_10355	COG1846	Transcriptional regulator
TQ29_10360	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
TQ29_10370	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
TQ29_10380	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
TQ29_10385	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
TQ29_10390	COG4133	protoheme IX ABC transporter activity
TQ29_10395	COG3737	Protein of unknown function (DUF498/DUF598)
TQ29_10405	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TQ29_10410	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
TQ29_10415	COG1862	Preprotein translocase
TQ29_10425	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
TQ29_10435	COG0800	Aldolase
TQ29_10470	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TQ29_10480	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TQ29_10485	COG0028	Belongs to the TPP enzyme family
TQ29_10490	COG0440	acetolactate synthase activity
TQ29_10505	COG1741	Belongs to the pirin family
TQ29_10515	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
TQ29_10530	COG1278	Cold shock
TQ29_10535	COG0259	pyridoxamine-phosphate oxidase activity
TQ29_10540	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
TQ29_10545	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
TQ29_10565	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
TQ29_10590	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
TQ29_10605	COG0134	indole-3-glycerol-phosphate synthase activity
TQ29_10610	COG0315	cyclic pyranopterin monophosphate synthase activity
TQ29_10615	COG0303	'Molybdopterin
TQ29_10620	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
TQ29_10625	COG0658	competence protein
TQ29_10625	COG2333	competence protein COMEC
TQ29_10630	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
TQ29_10640	COG1116	anion transmembrane transporter activity
TQ29_10645	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TQ29_10675	COG1024	Enoyl-CoA hydratase
TQ29_10680	COG3088	subunit of a heme lyase
TQ29_10685	COG1138	Cytochrome C-type biogenesis protein
TQ29_10700	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
TQ29_10705	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
TQ29_10720	COG0583	DNA-binding transcription factor activity
TQ29_10725	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
TQ29_10735	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
TQ29_10750	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
TQ29_10785	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
TQ29_10790	COG0516	GMP reductase activity
TQ29_10790	COG0517	IMP dehydrogenase activity
TQ29_10795	COG0583	DNA-binding transcription factor activity
TQ29_10805	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
TQ29_10825	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
TQ29_10845	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
TQ29_10855	COG0477	Major facilitator Superfamily
TQ29_10860	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
TQ29_10870	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
TQ29_10875	COG2833	Protein of unknown function (DUF455)
TQ29_10880	COG0739	heme binding
TQ29_10895	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
TQ29_10900	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
TQ29_10915	COG0436	Aminotransferase
TQ29_10930	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
TQ29_10940	COG0156	8-amino-7-oxononanoate synthase activity
TQ29_10970	COG1741	Belongs to the pirin family
TQ29_10995	COG0776	regulation of translation
TQ29_11000	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
TQ29_11010	COG1902	pentaerythritol trinitrate reductase activity
TQ29_11015	COG0343	queuine tRNA-ribosyltransferase activity
TQ29_11020	COG0189	ligase activity
TQ29_11020	COG4067	protein conserved in archaea
TQ29_11025	COG2151	metal-sulfur cluster biosynthetic enzyme
TQ29_11050	COG0149	triose-phosphate isomerase activity
TQ29_11055	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TQ29_11060	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
TQ29_11065	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TQ29_11095	COG3383	formate dehydrogenase (NAD+) activity
TQ29_11100	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
TQ29_11115	COG0811	peptide transport
TQ29_11120	COG1120	ATPase activity
TQ29_11125	COG4139	cobalamin transport
TQ29_11140	COG3454	Phosphonate metabolism
TQ29_11145	COG3627	carbon phosphorus lyase activity
TQ29_11155	COG3626	phosphonate metabolism
TQ29_11160	COG3624	Phosphonate C-P lyase system protein PhnG
TQ29_11170	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
TQ29_11175	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
TQ29_11180	COG3639	organic phosphonate transmembrane transporter activity
TQ29_11185	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
TQ29_11195	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
TQ29_11205	COG3639	organic phosphonate transmembrane transporter activity
TQ29_11245	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
TQ29_11280	COG4451	ribulose bisphosphate carboxylase, small
TQ29_11320	COG3454	Phosphonate metabolism
TQ29_11325	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
TQ29_11330	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
TQ29_11335	COG4778	phosphonate C-P lyase system protein PhnL
TQ29_11345	COG4107	phosphonate C-P lyase system protein PhnK
TQ29_11350	COG3627	carbon phosphorus lyase activity
TQ29_11355	COG3626	phosphonate metabolism
TQ29_11360	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
TQ29_11365	COG3624	Phosphonate C-P lyase system protein PhnG
TQ29_11370	COG2188	Transcriptional regulator
TQ29_11375	COG3454	Phosphonate metabolism
TQ29_11390	COG3639	organic phosphonate transmembrane transporter activity
TQ29_11400	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
TQ29_11430	COG0737	Belongs to the 5'-nucleotidase family
TQ29_11435	COG3258	Cytochrome c
TQ29_11460	COG0785	Cytochrome C biogenesis protein
TQ29_11480	COG0402	S-adenosylhomocysteine deaminase activity
TQ29_11485	COG1079	Belongs to the binding-protein-dependent transport system permease family
TQ29_11490	COG4603	Belongs to the binding-protein-dependent transport system permease family
TQ29_11495	COG3845	ABC transporter
TQ29_11515	COG1686	Belongs to the peptidase S11 family
TQ29_11520	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
TQ29_11530	COG0084	hydrolase, TatD family'
TQ29_11535	COG1234	tRNA 3'-trailer cleavage
TQ29_11585	COG0587	DNA-directed DNA polymerase activity
TQ29_11625	COG2368	4-hydroxyphenylacetate
TQ29_11630	COG0154	amidase activity
TQ29_11655	COG1902	pentaerythritol trinitrate reductase activity
TQ29_11660	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
TQ29_11665	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TQ29_11700	COG0523	cobalamin synthesis protein
TQ29_11720	COG2010	Cytochrome c
TQ29_11730	COG1272	protein, Hemolysin III
TQ29_11745	COG0321	lipoyl(octanoyl) transferase activity
TQ29_11765	COG1610	YqeY-like protein
TQ29_11770	COG0505	Belongs to the CarA family
TQ29_11780	COG1802	Transcriptional regulator
TQ29_11805	COG1522	sequence-specific DNA binding
TQ29_11810	COG1522	sequence-specific DNA binding
TQ29_11815	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
TQ29_11835	COG0574	Belongs to the PEP-utilizing enzyme family
TQ29_11835	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
TQ29_11840	COG0751	glycine-tRNA ligase activity
TQ29_11850	COG0752	glycyl-tRNA synthetase alpha subunit
TQ29_11860	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
TQ29_11870	COG1846	Transcriptional regulator
TQ29_11885	COG0625	glutathione transferase activity
TQ29_11890	COG2917	probably involved in intracellular septation
TQ29_11900	COG1285	pathogenesis
TQ29_11910	COG0552	protein localization to endoplasmic reticulum
TQ29_11915	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
TQ29_11930	COG0151	Belongs to the GarS family
TQ29_11945	COG1802	Transcriptional regulator
TQ29_11955	COG3842	ATPase activity
TQ29_11960	COG1176	ABC-type spermidine putrescine transport system, permease component I
TQ29_11965	COG1177	transmembrane transport
TQ29_12000	COG0330	HflC and HflK could
TQ29_12005	COG0330	HflC and HflK could
TQ29_12015	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
TQ29_12035	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
TQ29_12050	COG0504	CTP synthase activity
TQ29_12090	COG0174	glutamine synthetase
TQ29_12095	COG0519	Catalyzes the synthesis of GMP from XMP
TQ29_12095	COG0518	GMP synthase (glutamine-hydrolyzing) activity
TQ29_12100	COG0174	glutamine synthetase
TQ29_12105	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TQ29_12110	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
TQ29_12160	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
TQ29_12170	COG1132	(ABC) transporter
TQ29_12175	COG0354	folic acid binding
TQ29_12190	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
TQ29_12210	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
TQ29_12265	COG0494	nUDIX hydrolase
TQ29_12275	COG0415	Belongs to the DNA photolyase family
TQ29_12280	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
TQ29_12285	COG0604	alcohol dehydrogenase
TQ29_12290	COG0471	metal ion transport
TQ29_12305	COG0114	fumarate hydratase activity
TQ29_12320	COG2166	iron-sulfur cluster assembly
TQ29_12330	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
TQ29_12335	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
TQ29_12340	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
TQ29_12350	COG2205	protein histidine kinase activity
TQ29_12355	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
TQ29_12370	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
TQ29_12370	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
TQ29_12375	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
TQ29_12380	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
TQ29_12385	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
TQ29_12385	COG0512	Glutamine amidotransferase of anthranilate synthase
TQ29_12395	COG0302	gtp cyclohydrolase
TQ29_12400	COG1252	NADH dehydrogenase
TQ29_12420	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
TQ29_12425	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
TQ29_12445	COG4604	ABC transporter, ATP-binding protein
TQ29_12450	COG4605	iron ion homeostasis
TQ29_12455	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
TQ29_12460	COG4607	ABC-type enterochelin transport system periplasmic component
TQ29_12480	COG0811	peptide transport
TQ29_12485	COG4771	TonB-dependent receptor
TQ29_12500	COG0583	DNA-binding transcription factor activity
TQ29_12505	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
TQ29_12515	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
TQ29_12525	COG1129	ABC transporter
TQ29_12530	COG1172	Belongs to the binding-protein-dependent transport system permease family
TQ29_12535	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
TQ29_12565	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
TQ29_12570	COG2309	aminopeptidase activity
TQ29_12575	COG1335	isochorismatase
TQ29_12585	COG0596	Alpha beta hydrolase
TQ29_12610	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_12615	COG0444	Belongs to the ABC transporter superfamily
TQ29_12620	COG4608	Belongs to the ABC transporter superfamily
TQ29_12630	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
TQ29_12640	COG1172	Belongs to the binding-protein-dependent transport system permease family
TQ29_12650	COG1172	Belongs to the binding-protein-dependent transport system permease family
TQ29_12655	COG1172	Belongs to the binding-protein-dependent transport system permease family
TQ29_12660	COG1129	ABC transporter
TQ29_12680	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TQ29_12685	COG3842	ATPase activity
TQ29_12700	COG2963	transposase activity
TQ29_12710	COG4372	Transposase
TQ29_12750	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
TQ29_12770	COG2309	aminopeptidase activity
TQ29_12795	COG0574	Belongs to the PEP-utilizing enzyme family
TQ29_12795	COG3848	Pyruvate phosphate dikinase
TQ29_12800	COG0574	Belongs to the PEP-utilizing enzyme family
TQ29_12800	COG3848	Pyruvate phosphate dikinase
TQ29_12805	COG1335	isochorismatase
TQ29_12855	COG0110	maltose O-acetyltransferase activity
TQ29_12860	COG0033	Phosphoglucomutase
TQ29_12900	COG0010	Belongs to the arginase family
TQ29_12905	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
TQ29_12940	COG3750	Belongs to the UPF0335 family
TQ29_12975	COG2391	methyltransferase activity
TQ29_12995	COG2205	protein histidine kinase activity
TQ29_13005	COG0745	RESPONSE REGULATOR receiver
TQ29_13025	COG1172	Belongs to the binding-protein-dependent transport system permease family
TQ29_13035	COG0410	ABC transporter
TQ29_13040	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
TQ29_13050	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TQ29_13055	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TQ29_13080	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
TQ29_13085	COG1309	transcriptional regulator
TQ29_13095	COG0493	'glutamate synthase
TQ29_13105	COG0439	Biotin carboxylase
TQ29_13110	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
TQ29_13130	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
TQ29_13135	COG0740	serine-type endopeptidase activity
TQ29_13140	COG4134	Bacterial extracellular solute-binding protein
TQ29_13145	COG4135	transport system, permease component
TQ29_13150	COG4136	ATPase activity
TQ29_13185	COG0784	Response regulator, receiver
TQ29_13225	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
TQ29_13250	COG2873	o-acetylhomoserine
TQ29_13270	COG1329	Transcriptional regulator
TQ29_13275	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
TQ29_13280	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
TQ29_13290	COG0457	Tetratricopeptide repeat
TQ29_13305	COG0179	Fumarylacetoacetate (FAA) hydrolase
TQ29_13340	COG0564	pseudouridine synthase activity
TQ29_13375	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
TQ29_13380	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
TQ29_13385	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TQ29_13385	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TQ29_13415	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TQ29_13415	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
TQ29_13420	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
TQ29_13425	COG0432	Pfam Uncharacterised protein family UPF0047
TQ29_13440	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
TQ29_13455	COG0446	pyridine nucleotide-disulphide oxidoreductase
TQ29_13455	COG0404	The glycine cleavage system catalyzes the degradation of glycine
TQ29_13460	COG4311	Sarcosine oxidase, delta subunit
TQ29_13465	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
TQ29_13470	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
TQ29_13515	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
TQ29_13540	COG1804	L-carnitine dehydratase bile acid-inducible protein F
TQ29_13545	COG1960	acyl-CoA dehydrogenase activity
TQ29_13575	COG0446	pyridine nucleotide-disulphide oxidoreductase
TQ29_13585	COG1275	C4-dicarboxylate transporter malic acid transport protein
TQ29_13590	COG1108	ABC-type Mn2 Zn2 transport systems permease components
TQ29_13595	COG1121	(ABC) transporter
TQ29_13620	COG2351	hydroxyisourate hydrolase activity
TQ29_13630	COG3257	ureidoglycine aminohydrolase activity
TQ29_13635	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
TQ29_13640	COG2233	PERMEase
TQ29_13650	COG1294	oxidase, subunit
TQ29_13655	COG1271	oxidase subunit
TQ29_13660	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
TQ29_13665	COG4988	ABC transporter
TQ29_13685	COG0489	protein tyrosine kinase activity
TQ29_13685	COG3206	protein involved in exopolysaccharide biosynthesis
TQ29_13690	COG1596	polysaccharide export
TQ29_13700	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TQ29_13740	COG0438	transferase activity, transferring glycosyl groups
TQ29_13795	COG0071	Belongs to the small heat shock protein (HSP20) family
TQ29_13820	COG1176	ABC-type spermidine putrescine transport system, permease component I
TQ29_13830	COG3842	ATPase activity
TQ29_13845	COG0747	negative chemotaxis
TQ29_13850	COG0601	transmembrane transport
TQ29_13855	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_13870	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
TQ29_13875	COG0709	Synthesizes selenophosphate from selenide and ATP
TQ29_13885	COG0577	efflux transmembrane transporter activity
TQ29_13890	COG4181	ATPase activity
TQ29_13900	COG3842	ATPase activity
TQ29_13905	COG1176	ABC-type spermidine putrescine transport system, permease component I
TQ29_13910	COG1177	transmembrane transport
TQ29_13950	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
TQ29_13955	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
TQ29_13960	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
TQ29_13970	COG2169	Transcriptional regulator
TQ29_13970	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
TQ29_13975	COG2885	chlorophyll binding
TQ29_13985	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
TQ29_13990	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
TQ29_14000	COG0356	it plays a direct role in the translocation of protons across the membrane
TQ29_14030	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
TQ29_14035	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
TQ29_14055	COG0228	four-way junction DNA binding
TQ29_14060	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
TQ29_14070	COG0335	large ribosomal subunit rRNA binding
TQ29_14075	COG0254	rRNA binding
TQ29_14080	COG2151	metal-sulfur cluster biosynthetic enzyme
TQ29_14080	COG0489	protein tyrosine kinase activity
TQ29_14110	COG2801	Transposase and inactivated derivatives
TQ29_14110	COG3415	Transposase
TQ29_14150	COG0398	Pfam SNARE associated Golgi protein
TQ29_14215	COG0012	GTP binding
TQ29_14220	COG0159	tryptophan synthase activity
TQ29_14225	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
TQ29_14225	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
TQ29_14240	COG4770	biotin carboxylase activity
TQ29_14255	COG0251	oxidation-reduction process
TQ29_14265	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
TQ29_14270	COG2814	Major facilitator Superfamily
TQ29_14275	COG1396	sequence-specific DNA binding
TQ29_14275	COG3800	Transcriptional regulator
TQ29_14300	COG0217	transcriptional regulatory protein
TQ29_14305	COG0659	secondary active sulfate transmembrane transporter activity
TQ29_14315	COG0471	metal ion transport
TQ29_14315	COG3273	potassium ion transport
TQ29_14325	COG1692	metallophosphoesterase
TQ29_14330	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
TQ29_14335	COG2239	Acts as a magnesium transporter
TQ29_14340	COG0402	S-adenosylhomocysteine deaminase activity
TQ29_14355	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
TQ29_14360	COG1530	ribonuclease E activity
TQ29_14365	COG0424	maF-like protein
TQ29_14370	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
TQ29_14380	COG5328	Belongs to the UPF0262 family
TQ29_14385	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
TQ29_14400	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
TQ29_14450	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
TQ29_14475	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
TQ29_14550	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
TQ29_14555	COG1012	belongs to the aldehyde dehydrogenase family
TQ29_14575	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
TQ29_14580	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
TQ29_14585	COG0747	negative chemotaxis
TQ29_14595	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_14605	COG3191	aminopeptidase activity
TQ29_14610	COG1012	belongs to the aldehyde dehydrogenase family
TQ29_14625	COG3591	Belongs to the peptidase S1B family
TQ29_14630	COG0247	lactate metabolic process
TQ29_14635	COG0277	FAD linked oxidase domain protein
TQ29_14640	COG0277	FAD linked oxidase domain protein
TQ29_14670	COG0714	Associated with various cellular activities
TQ29_14680	COG3622	Belongs to the hyi family
TQ29_14695	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TQ29_14695	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
TQ29_14715	COG4181	ATPase activity
TQ29_14725	COG0277	FAD linked oxidase domain protein
TQ29_14735	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
TQ29_14745	COG1053	succinate dehydrogenase
TQ29_14765	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
TQ29_14800	COG2855	membrane
TQ29_14805	COG0181	hydroxymethylbilane synthase activity
TQ29_14810	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
TQ29_14830	COG0408	coproporphyrinogen oxidase activity
TQ29_14840	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_14845	COG2813	Specifically methylates the guanine in position
TQ29_14850	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
TQ29_14860	COG1686	Belongs to the peptidase S11 family
TQ29_14880	COG0348	domain, Protein
TQ29_14885	COG2010	Cytochrome c
TQ29_14910	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
TQ29_14915	COG0635	Involved in the biosynthesis of porphyrin-containing compound
TQ29_14920	COG4172	Belongs to the ABC transporter superfamily
TQ29_14925	COG4239	(ABC) transporter, permease
TQ29_14930	COG4174	ABC transporter (Permease)
TQ29_14935	COG4166	transmembrane transport
TQ29_14950	COG0077	Prephenate dehydratase
TQ29_14950	COG1605	Chorismate mutase
TQ29_14960	COG2816	NAD+ diphosphatase activity
TQ29_14965	COG0737	Belongs to the 5'-nucleotidase family
TQ29_14970	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
TQ29_14980	COG1116	anion transmembrane transporter activity
TQ29_15015	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
TQ29_15020	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
TQ29_15035	COG3038	cytochrome b561
TQ29_15060	COG2326	polyphosphate kinase activity
TQ29_15065	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
TQ29_15070	COG1522	sequence-specific DNA binding
TQ29_15075	COG0686	Belongs to the AlaDH PNT family
TQ29_15085	COG0625	glutathione transferase activity
TQ29_15095	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
TQ29_15095	COG0072	phenylalanine-tRNA ligase activity
TQ29_15105	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
TQ29_15110	COG0291	Belongs to the bacterial ribosomal protein bL35 family
TQ29_15115	COG0469	pyruvate kinase activity
TQ29_15145	COG4948	Mandelate Racemase Muconate Lactonizing
TQ29_15155	COG2301	Belongs to the HpcH HpaI aldolase family
TQ29_15165	COG0825	malonyl-CoA metabolic process
TQ29_15185	COG2884	Cell division ATP-binding protein ftsE
TQ29_15200	COG0019	diaminopimelate decarboxylase activity
TQ29_15205	COG0165	Argininosuccinate lyase
TQ29_15210	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
TQ29_15215	COG2818	Glycosylase
TQ29_15230	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_15235	COG2264	protein methyltransferase activity
TQ29_15245	COG0142	geranyltranstransferase activity
TQ29_15250	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
TQ29_15275	COG0746	molybdenum cofactor guanylyltransferase activity
TQ29_15310	COG1960	acyl-CoA dehydrogenase activity
TQ29_15315	COG0009	L-threonylcarbamoyladenylate synthase
TQ29_15330	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
TQ29_15345	COG0521	Mo-molybdopterin cofactor biosynthetic process
TQ29_15350	COG1573	uracil-dna glycosylase
TQ29_15355	COG0540	Belongs to the ATCase OTCase family
TQ29_15360	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
TQ29_15365	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
TQ29_15390	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
TQ29_15395	COG3047	cAMP biosynthetic process
TQ29_15395	COG2885	chlorophyll binding
TQ29_15405	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
TQ29_15415	COG0314	molybdopterin synthase activity
TQ29_15425	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
TQ29_15430	COG0322	excinuclease ABC activity
TQ29_15435	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_15450	COG0616	signal peptide processing
TQ29_15450	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
TQ29_15460	COG1618	nucleotide phosphatase activity, acting on free nucleotides
TQ29_15460	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
TQ29_15485	COG1858	cytochrome C peroxidase
TQ29_15510	COG2995	paraquat-inducible protein a
TQ29_15515	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
TQ29_15515	COG3008	intermembrane lipid transfer
TQ29_15545	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
TQ29_15555	COG0481	GTPase activity
TQ29_15570	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
TQ29_15575	COG0022	dehydrogenase e1 component
TQ29_15605	COG2010	Cytochrome c
TQ29_15630	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_15655	COG3685	Protein conserved in bacteria
TQ29_15660	COG2124	cytochrome p450
TQ29_15675	COG0656	L-ascorbic acid biosynthetic process
TQ29_15680	COG3932	Exopolysaccharide synthesis, ExoD
TQ29_15700	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
TQ29_15705	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
TQ29_15705	COG2010	Cytochrome c
TQ29_15730	COG1877	trehalose-phosphatase activity
TQ29_15750	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_15755	COG1053	succinate dehydrogenase
TQ29_15795	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_15800	COG0179	Fumarylacetoacetate (FAA) hydrolase
TQ29_15815	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
TQ29_15820	COG0765	amino acid transport
TQ29_15825	COG0765	amino acid transport
TQ29_15830	COG4598	ABC transporter
TQ29_15835	COG2188	Transcriptional regulator
TQ29_15840	COG0583	DNA-binding transcription factor activity
TQ29_15855	COG0402	S-adenosylhomocysteine deaminase activity
TQ29_15860	COG1228	amidohydrolase
TQ29_15865	COG2986	histidine ammonia-lyase
TQ29_15875	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
TQ29_15890	COG0277	FAD linked oxidase domain protein
TQ29_15900	COG3284	Transcriptional regulator
TQ29_15905	COG0145	ligase activity
TQ29_15910	COG0146	N-methylhydantoinase B acetone carboxylase alpha subunit
TQ29_15915	COG4647	ligase activity
TQ29_15925	COG0405	Gamma-glutamyltransferase
TQ29_15930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
TQ29_15945	COG4608	Belongs to the ABC transporter superfamily
TQ29_15950	COG0444	Belongs to the ABC transporter superfamily
TQ29_15985	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
TQ29_15995	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
TQ29_16005	COG0730	response to heat
TQ29_16010	COG2186	Transcriptional regulator
TQ29_16015	COG1079	Belongs to the binding-protein-dependent transport system permease family
TQ29_16025	COG1129	ABC transporter
TQ29_16030	COG1744	ABC transporter substrate-binding protein PnrA-like
TQ29_16040	COG2368	4-hydroxyphenylacetate
TQ29_16050	COG0154	amidase activity
TQ29_16055	COG0154	amidase activity
TQ29_16065	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
TQ29_16070	COG2309	aminopeptidase activity
TQ29_16075	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
TQ29_16090	COG1959	2 iron, 2 sulfur cluster binding
TQ29_16105	COG4208	sulfate ABC transporter
TQ29_16115	COG1522	sequence-specific DNA binding
TQ29_16125	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TQ29_16130	COG4569	acetaldehyde dehydrogenase (acetylating) activity
TQ29_16170	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
TQ29_16180	COG3971	2-oxopent-4-enoate hydratase activity
TQ29_16210	COG3384	dioxygenase
TQ29_16220	COG2267	carboxylic ester hydrolase activity
TQ29_16240	COG0318	PFAM AMP-dependent synthetase and ligase
TQ29_16265	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
TQ29_16270	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
TQ29_16290	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
TQ29_16300	COG1492	cobalamin metabolic process
TQ29_16345	COG2099	Precorrin-6x reductase
TQ29_16360	COG2875	Belongs to the precorrin methyltransferase family
TQ29_16365	COG1797	cobyrinic acid a,c-diamide synthase activity
TQ29_16370	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
TQ29_16370	COG1648	precorrin-2 dehydrogenase activity
TQ29_16385	COG1309	transcriptional regulator
TQ29_16400	COG1289	transmembrane transporter activity
TQ29_16425	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
TQ29_16430	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
TQ29_16480	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
TQ29_16500	COG0559	Belongs to the binding-protein-dependent transport system permease family
TQ29_16625	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
TQ29_16630	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
TQ29_16640	COG0069	glutamate synthase activity
TQ29_16655	COG0542	response to heat
TQ29_16670	COG0284	orotidine-5'-phosphate decarboxylase activity
TQ29_16680	COG1733	regulation of RNA biosynthetic process
TQ29_16695	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
TQ29_16710	COG0257	Belongs to the bacterial ribosomal protein bL36 family
TQ29_16715	COG3243	poly(R)-hydroxyalkanoic acid synthase
TQ29_16730	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
TQ29_16735	COG0612	Peptidase, M16
TQ29_16740	COG0612	Peptidase, M16
TQ29_16750	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
TQ29_16755	COG0138	bifunctional purine biosynthesis protein purh
TQ29_16775	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
TQ29_16780	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
TQ29_16790	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
TQ29_16805	COG0022	dehydrogenase e1 component
TQ29_16810	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
TQ29_16830	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
TQ29_16835	COG1185	polyribonucleotide nucleotidyltransferase activity
TQ29_16840	COG0450	alkyl hydroperoxide reductase
TQ29_16850	COG0564	pseudouridine synthase activity
TQ29_16855	COG1956	GAF domain-containing protein
TQ29_16895	COG1674	ftsk spoiiie
TQ29_16900	COG0436	Aminotransferase
TQ29_16905	COG0154	amidase activity
TQ29_16910	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
TQ29_16915	COG2835	tetraacyldisaccharide 4'-kinase activity
TQ29_16950	COG0745	RESPONSE REGULATOR receiver
TQ29_16970	COG0457	Tetratricopeptide repeat
TQ29_16985	COG0495	leucyl-tRNA aminoacylation
TQ29_17000	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
TQ29_17005	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
TQ29_17025	COG0312	modulator of DNA gyrase
TQ29_17030	COG0483	inositol monophosphate 1-phosphatase activity
TQ29_17060	COG1194	a g-specific adenine glycosylase
TQ29_17070	COG1597	lipid kinase activity
TQ29_17085	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
TQ29_17095	COG0667	Aldo Keto reductase
TQ29_17110	COG1609	Transcriptional regulator
TQ29_17115	COG0463	Glycosyl transferase, family 2
TQ29_17125	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
TQ29_17135	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
TQ29_17140	COG1088	dTDP-glucose 4,6-dehydratase activity
TQ29_17145	COG1091	dTDP-4-dehydrorhamnose reductase activity
TQ29_17160	COG0729	surface antigen
TQ29_17165	COG1648	precorrin-2 dehydrogenase activity
TQ29_17165	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
TQ29_17175	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
TQ29_17195	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
TQ29_17200	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
TQ29_17210	COG0625	glutathione transferase activity
TQ29_17245	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
TQ29_17255	COG4143	(ABC) transporter
TQ29_17270	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
TQ29_17285	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
TQ29_17300	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
TQ29_17305	COG0142	geranyltranstransferase activity
TQ29_17310	COG1722	exodeoxyribonuclease VII activity
TQ29_17315	COG0123	including yeast histone deacetylase and acetoin utilization protein
TQ29_17320	COG0745	RESPONSE REGULATOR receiver
TQ29_17325	COG1846	Transcriptional regulator
TQ29_17330	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
TQ29_17355	COG1216	Glycosyl transferase, family 2
TQ29_17375	COG1216	Glycosyl transferase, family 2
TQ29_17390	COG1215	transferase activity, transferring glycosyl groups
TQ29_17410	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
TQ29_17430	COG1596	polysaccharide export
TQ29_17440	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TQ29_17440	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
TQ29_17455	COG0179	Fumarylacetoacetate (FAA) hydrolase
TQ29_17465	COG3246	L-lysine catabolic process to acetate
TQ29_17475	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_17505	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
TQ29_17505	COG0596	Alpha beta hydrolase
TQ29_17510	COG2909	trisaccharide binding
TQ29_17525	COG0431	NADPH-dependent FMN reductase
TQ29_17525	COG1053	succinate dehydrogenase
TQ29_17525	COG3976	FMN-binding domain protein
TQ29_17550	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_17555	COG0183	Belongs to the thiolase family
TQ29_17570	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
TQ29_17575	COG1960	acyl-CoA dehydrogenase activity
TQ29_17610	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_17615	COG1053	succinate dehydrogenase
TQ29_17630	COG2084	Dehydrogenase
TQ29_17635	COG2124	cytochrome p450
TQ29_17640	COG0633	Ferredoxin
TQ29_17650	COG1960	acyl-CoA dehydrogenase activity
TQ29_17655	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_17665	COG0604	alcohol dehydrogenase
TQ29_17675	COG1960	acyl-CoA dehydrogenase activity
TQ29_17690	COG1960	acyl-CoA dehydrogenase activity
TQ29_17700	COG0183	Belongs to the thiolase family
TQ29_17775	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
TQ29_17830	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
TQ29_17840	COG0589	response to stress
TQ29_17845	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
TQ29_17850	COG0288	reversible hydration of carbon dioxide
TQ29_17860	COG0583	DNA-binding transcription factor activity
TQ29_17945	COG0640	Transcriptional regulator
TQ29_17955	COG1192	Involved in chromosome partitioning
TQ29_17970	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
TQ29_18090	COG0653	protein targeting
TQ29_18105	COG0183	Belongs to the thiolase family
TQ29_18110	COG1024	Enoyl-CoA hydratase
TQ29_18110	COG1250	3-hydroxyacyl-CoA dehydrogenase
TQ29_18115	COG1960	acyl-CoA dehydrogenase activity
TQ29_18125	COG2030	dehydratase
TQ29_18170	COG4644	lycopene metabolic process
TQ29_18180	COG2610	gluconate transmembrane transporter activity
TQ29_18210	COG2111	Na H antiporter
TQ29_18210	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
TQ29_18215	COG1006	Multisubunit Na H antiporter MnhC subunit
TQ29_18220	COG0651	ATP synthesis coupled electron transport
TQ29_18230	COG2212	antiporter activity
TQ29_18270	COG1230	cation diffusion facilitator family transporter
TQ29_18275	COG0398	Pfam SNARE associated Golgi protein
TQ29_18310	COG1138	Cytochrome C-type biogenesis protein
TQ29_18315	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
TQ29_18320	COG3088	subunit of a heme lyase
TQ29_18325	COG4235	cytochrome complex assembly
TQ29_18355	COG2010	Cytochrome c
TQ29_18360	COG2132	Multicopper oxidase
TQ29_18370	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
TQ29_18370	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
TQ29_18375	COG2217	Heavy metal translocating P-type atpase
TQ29_18400	COG2132	Multicopper oxidase
TQ29_18430	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
TQ29_18450	COG0785	Cytochrome C biogenesis protein
TQ29_18470	COG1321	iron dependent repressor
TQ29_18480	COG0815	Transfers the fatty acyl group on membrane lipoproteins
TQ29_18485	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
TQ29_18505	COG1999	signal sequence binding
TQ29_18515	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
TQ29_18525	COG1999	signal sequence binding
TQ29_18530	COG0789	Transcriptional regulator
TQ29_18580	COG0739	heme binding
TQ29_18580	COG0741	lytic transglycosylase activity
TQ29_18580	COG1196	nuclear chromosome segregation
TQ29_18600	COG0739	heme binding
TQ29_18600	COG0741	lytic transglycosylase activity
TQ29_18600	COG1196	nuclear chromosome segregation
TQ29_18620	COG2948	multi-organism process
TQ29_18625	COG4962	Type ii secretion system protein e
TQ29_18735	COG0464	growth
TQ29_18775	COG2207	Transcriptional regulator
TQ29_18780	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_18785	COG2072	flavoprotein involved in K transport
TQ29_18845	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_18850	COG1960	acyl-CoA dehydrogenase activity
TQ29_18855	COG1960	acyl-CoA dehydrogenase activity
TQ29_18860	COG2030	dehydratase
TQ29_18870	COG0183	Belongs to the thiolase family
TQ29_18885	COG1960	acyl-CoA dehydrogenase activity
TQ29_18895	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
TQ29_18910	COG1063	alcohol dehydrogenase
TQ29_18965	COG4962	Type ii secretion system protein e
TQ29_18970	COG2948	multi-organism process
TQ29_18990	COG0739	heme binding
TQ29_18990	COG0741	lytic transglycosylase activity
TQ29_18990	COG1196	nuclear chromosome segregation
TQ29_19010	COG0739	heme binding
TQ29_19010	COG1196	nuclear chromosome segregation
TQ29_19010	COG0741	lytic transglycosylase activity
TQ29_19045	COG1487	ribonuclease activity
TQ29_19050	COG1002	Type II restriction enzyme, methylase subunits
TQ29_19065	COG1061	Type III restriction enzyme res subunit
TQ29_19070	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
TQ29_19075	COG4644	lycopene metabolic process
TQ29_19085	COG0625	glutathione transferase activity
TQ29_19130	COG0179	Fumarylacetoacetate (FAA) hydrolase
TQ29_19145	COG1804	L-carnitine dehydratase bile acid-inducible protein F
TQ29_19180	COG2146	nitrite reductase [NAD(P)H] activity
TQ29_19250	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
TQ29_19275	COG1414	Transcriptional regulator
TQ29_19285	COG1192	Involved in chromosome partitioning
TQ29_19295	COG3546	catalase activity
TQ29_19305	COG1028	Short-chain dehydrogenase reductase Sdr
TQ29_19320	COG2032	superoxide dismutase activity
TQ29_19340	COG1295	ribonuclease BN
TQ29_19365	COG0366	Alpha amylase catalytic
TQ29_19425	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
TQ29_19440	COG3415	Transposase
TQ29_19440	COG2801	Transposase and inactivated derivatives
TQ29_19465	COG1196	nuclear chromosome segregation
TQ29_19465	COG0741	lytic transglycosylase activity
TQ29_19465	COG0739	heme binding
TQ29_19480	COG3451	type IV secretory pathway VirB4
TQ29_19490	COG0741	lytic transglycosylase activity
TQ29_19490	COG1196	nuclear chromosome segregation
TQ29_19490	COG0739	heme binding
TQ29_19510	COG2948	multi-organism process
TQ29_19535	COG1230	cation diffusion facilitator family transporter
TQ29_19545	COG4644	lycopene metabolic process
TQ29_19595	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
TQ29_19615	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
TQ29_19620	COG3831	ATPase activity
TQ29_19710	COG1477	protein flavinylation
TQ29_19730	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
TQ29_19755	COG1475	DNA binding
TQ29_19770	COG1192	Involved in chromosome partitioning
TQ29_19805	COG2132	Multicopper oxidase
TQ29_19810	COG1321	iron dependent repressor
TQ29_19820	COG2132	Multicopper oxidase
TQ29_19835	COG2010	Cytochrome c
TQ29_19860	COG3034	peptidoglycan biosynthetic process
TQ29_19870	COG2366	antibiotic biosynthetic process
TQ29_19880	COG0815	Transfers the fatty acyl group on membrane lipoproteins
TQ29_19905	COG1999	signal sequence binding
TQ29_19915	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
TQ29_19915	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
TQ29_19925	COG1999	signal sequence binding
TQ29_19930	COG0789	Transcriptional regulator
TQ29_19945	COG1230	cation diffusion facilitator family transporter
TQ29_19960	COG0785	Cytochrome C biogenesis protein
TQ29_20030	COG1012	belongs to the aldehyde dehydrogenase family
TQ29_20085	COG1196	nuclear chromosome segregation
TQ29_20085	COG0741	lytic transglycosylase activity
TQ29_20085	COG0739	heme binding
TQ29_20105	COG0741	lytic transglycosylase activity
TQ29_20105	COG1196	nuclear chromosome segregation
TQ29_20105	COG0739	heme binding
TQ29_20125	COG2948	multi-organism process
TQ29_20130	COG4962	Type ii secretion system protein e