locus-tag class description ACEE_00005 PF11638 DnaA N-terminal domain ACEE_00005 PF08299 Bacterial dnaA protein helix-turn-helix ACEE_00005 PF00308 Bacterial dnaA protein ACEE_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain ACEE_00010 PF02767 DNA polymerase III beta subunit, central domain ACEE_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain ACEE_00015 PF02463 RecF/RecN/SMC N terminal domain ACEE_00020 PF00080 Copper/zinc superoxide dismutase (SODC) ACEE_00025 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACEE_00025 PF02774 Semialdehyde dehydrogenase, dimerisation domain ACEE_00035 PF02684 Lipid-A-disaccharide synthetase ACEE_00040 PF08496 Peptidase family S49 N-terminal ACEE_00040 PF01343 Peptidase family S49 ACEE_00050 PF01430 Hsp33 protein ACEE_00055 PF01479 S4 domain ACEE_00060 PF00293 NUDIX domain ACEE_00065 PF00459 Inositol monophosphatase family ACEE_00070 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ACEE_00070 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ACEE_00075 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ACEE_00080 PF07690 Major Facilitator Superfamily ACEE_00085 PF01177 Asp/Glu/Hydantoin racemase ACEE_00090 PF01757 Acyltransferase family ACEE_00095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACEE_00095 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ACEE_00110 PF04354 ZipA, C-terminal FtsZ-binding domain ACEE_00115 PF00533 BRCA1 C Terminus (BRCT) domain ACEE_00115 PF01653 NAD-dependent DNA ligase adenylation domain ACEE_00115 PF12826 Helix-hairpin-helix motif ACEE_00115 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ACEE_00115 PF03120 NAD-dependent DNA ligase OB-fold domain ACEE_00120 PF13807 G-rich domain on putative tyrosine kinase ACEE_00120 PF02706 Chain length determinant protein ACEE_00120 PF13614 AAA domain ACEE_00125 PF02563 Polysaccharide biosynthesis/export protein ACEE_00125 PF10531 SLBB domain ACEE_00125 PF18412 Outer-membrane lipoprotein Wza C-terminal domain ACEE_00130 PF02397 Bacterial sugar transferase ACEE_00160 PF01370 NAD dependent epimerase/dehydratase family ACEE_00165 PF07690 Major Facilitator Superfamily ACEE_00175 PF05191 Adenylate kinase, active site lid ACEE_00185 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ACEE_00185 PF00056 lactate/malate dehydrogenase, NAD binding domain ACEE_00190 PF02863 Arginine repressor, C-terminal domain ACEE_00190 PF01316 Arginine repressor, DNA binding domain ACEE_00195 PF01370 NAD dependent epimerase/dehydratase family ACEE_00195 PF08338 Domain of unknown function (DUF1731) ACEE_00200 PF00595 PDZ domain ACEE_00205 PF00005 ABC transporter ACEE_00210 PF02405 Permease MlaE ACEE_00215 PF02470 MlaD protein ACEE_00220 PF05494 MlaC protein ACEE_00230 PF01722 BolA-like protein ACEE_00235 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACEE_00250 PF12848 ABC transporter ACEE_00250 PF00005 ABC transporter ACEE_00255 PF00929 Exonuclease ACEE_00275 PF02657 Fe-S metabolism associated domain ACEE_00280 PF00574 Clp protease ACEE_00285 PF07724 AAA domain (Cdc48 subfamily) ACEE_00285 PF06689 ClpX C4-type zinc finger ACEE_00285 PF10431 C-terminal, D2-small domain, of ClpB protein ACEE_00290 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ACEE_00295 PF03966 Trm112p-like protein ACEE_00305 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACEE_00330 PF04055 Radical SAM superfamily ACEE_00340 PF17674 HHH domain ACEE_00340 PF00575 S1 RNA binding domain ACEE_00340 PF16921 Tex protein YqgF-like domain ACEE_00340 PF09371 Tex-like protein N-terminal domain ACEE_00345 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACEE_00350 PF10263 SprT-like family ACEE_00350 PF17283 SprT-like zinc ribbon domain ACEE_00355 PF00445 Ribonuclease T2 family ACEE_00360 PF01343 Peptidase family S49 ACEE_00365 PF00881 Nitroreductase family ACEE_00370 PF00106 short chain dehydrogenase ACEE_00375 PF00403 Heavy-metal-associated domain ACEE_00380 PF00403 Heavy-metal-associated domain ACEE_00385 PF09278 MerR, DNA binding ACEE_00385 PF00376 MerR family regulatory protein ACEE_00390 PF12849 PBP superfamily domain ACEE_00395 PF13609 Gram-negative porin ACEE_00400 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_00405 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_00410 PF00005 ABC transporter ACEE_00415 PF00072 Response regulator receiver domain ACEE_00415 PF00486 Transcriptional regulatory protein, C terminal ACEE_00420 PF00512 His Kinase A (phospho-acceptor) domain ACEE_00420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACEE_00425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACEE_00425 PF00986 DNA gyrase B subunit, carboxyl terminus ACEE_00425 PF01751 Toprim domain ACEE_00425 PF00204 DNA gyrase B ACEE_00430 PF00939 Sodium:sulfate symporter transmembrane region ACEE_00435 PF00939 Sodium:sulfate symporter transmembrane region ACEE_00440 PF00939 Sodium:sulfate symporter transmembrane region ACEE_00445 PF00162 Phosphoglycerate kinase ACEE_00450 PF01116 Fructose-bisphosphate aldolase class-II ACEE_00455 PF00005 ABC transporter ACEE_00470 PF00881 Nitroreductase family ACEE_00475 PF03350 Uncharacterized protein family, UPF0114 ACEE_00480 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACEE_00480 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACEE_00490 PF01026 TatD related DNase ACEE_00495 PF02554 Carbon starvation protein CstA ACEE_00500 PF02446 4-alpha-glucanotransferase ACEE_00505 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_00510 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_00510 PF14785 Maltose transport system permease protein MalF P2 domain ACEE_00515 PF01547 Bacterial extracellular solute-binding protein ACEE_00520 PF17912 MalK OB fold domain ACEE_00520 PF00005 ABC transporter ACEE_00525 PF02264 LamB porin ACEE_00530 PF07148 Maltose operon periplasmic protein precursor (MalM) ACEE_00535 PF17874 MalT-like TPR region ACEE_00535 PF00196 Bacterial regulatory proteins, luxR family ACEE_00540 PF00343 Carbohydrate phosphorylase ACEE_00550 PF04461 Protein of unknown function (DUF520) ACEE_00555 PF18429 Domain of unknown function (DUF5609) ACEE_00560 PF10144 Bacterial virulence factor haemolysin ACEE_00565 PF01176 Translation initiation factor 1A / IF-1 ACEE_00575 PF02635 DsrE/DsrF-like family ACEE_00580 PF00860 Permease family ACEE_00590 PF04073 Aminoacyl-tRNA editing domain ACEE_00595 PF01402 Ribbon-helix-helix protein, copG family ACEE_00600 PF00258 Flavodoxin ACEE_00605 PF01475 Ferric uptake regulator family ACEE_00610 PF02470 MlaD protein ACEE_00615 PF02664 S-Ribosylhomocysteinase (LuxS) ACEE_00620 PF00005 ABC transporter ACEE_00620 PF00664 ABC transporter transmembrane region ACEE_00625 PF13419 Haloacid dehalogenase-like hydrolase ACEE_00635 PF02810 SEC-C motif ACEE_00635 PF03695 Uncharacterised protein family (UPF0149) ACEE_00640 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ACEE_00640 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ACEE_00645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACEE_00645 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACEE_00650 PF14698 Argininosuccinate lyase C-terminal ACEE_00650 PF00206 Lyase ACEE_00660 PF13464 Domain of unknown function (DUF4115) ACEE_00665 PF04551 GcpE protein ACEE_00670 PF03129 Anticodon binding domain ACEE_00670 PF13393 Histidyl-tRNA synthetase ACEE_00675 PF09976 Tetratricopeptide repeat-like domain ACEE_00680 PF04973 Nicotinamide mononucleotide transporter ACEE_00685 PF02844 Phosphoribosylglycinamide synthetase, N domain ACEE_00685 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ACEE_00685 PF02843 Phosphoribosylglycinamide synthetase, C domain ACEE_00690 PF01250 Ribosomal protein S6 ACEE_00695 PF00436 Single-strand binding protein family ACEE_00700 PF01084 Ribosomal protein S18 ACEE_00705 PF03948 Ribosomal protein L9, C-terminal domain ACEE_00705 PF01281 Ribosomal protein L9, N-terminal domain ACEE_00710 PF04325 Protein of unknown function (DUF465) ACEE_00715 PF16036 Chalcone isomerase-like ACEE_00720 PF00356 Bacterial regulatory proteins, lacI family ACEE_00725 PF08241 Methyltransferase domain ACEE_00730 PF00591 Glycosyl transferase family, a/b domain ACEE_00730 PF02885 Glycosyl transferase family, helical bundle domain ACEE_00735 PF00117 Glutamine amidotransferase class-I ACEE_00740 PF00425 chorismate binding enzyme ACEE_00740 PF04715 Anthranilate synthase component I, N terminal region ACEE_00745 PF04261 Dyp-type peroxidase family ACEE_00750 PF01300 Telomere recombination ACEE_00755 PF01479 S4 domain ACEE_00755 PF00849 RNA pseudouridylate synthase ACEE_00765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_00765 PF03466 LysR substrate binding domain ACEE_00780 PF08267 Cobalamin-independent synthase, N-terminal domain ACEE_00780 PF01717 Cobalamin-independent synthase, Catalytic domain ACEE_00800 PF05193 Peptidase M16 inactive domain ACEE_00800 PF00675 Insulinase (Peptidase family M16) ACEE_00805 PF00005 ABC transporter ACEE_00805 PF06472 ABC transporter transmembrane region 2 ACEE_00810 PF02075 Crossover junction endodeoxyribonuclease RuvC ACEE_00820 PF01709 Transcriptional regulator ACEE_00825 PF00293 NUDIX domain ACEE_00835 PF02938 GAD domain ACEE_00835 PF01336 OB-fold nucleic acid binding domain ACEE_00835 PF00152 tRNA synthetases class II (D, K and N) ACEE_00855 PF01258 Prokaryotic dksA/traR C4-type zinc finger ACEE_00860 PF01743 Poly A polymerase head domain ACEE_00860 PF12626 Polymerase A arginine-rich C-terminus ACEE_00860 PF12627 Probable RNA and SrmB- binding site of polymerase A ACEE_00865 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ACEE_00875 PF11739 Dicarboxylate transport ACEE_00885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACEE_00890 PF00929 Exonuclease ACEE_00900 PF07690 Major Facilitator Superfamily ACEE_00910 PF00109 Beta-ketoacyl synthase, N-terminal domain ACEE_00910 PF02801 Beta-ketoacyl synthase, C-terminal domain ACEE_00915 PF12633 Adenylate cyclase NT domain ACEE_00915 PF01295 Adenylate cyclase, class-I ACEE_00920 PF00999 Sodium/hydrogen exchanger family ACEE_00920 PF02254 TrkA-N domain ACEE_00925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ACEE_00925 PF01578 Cytochrome C assembly protein ACEE_00930 PF08534 Redoxin ACEE_00935 PF03918 Cytochrome C biogenesis protein ACEE_00945 PF01243 Pyridoxamine 5'-phosphate oxidase ACEE_00950 PF01243 Pyridoxamine 5'-phosphate oxidase ACEE_00955 PF04886 PT repeat ACEE_00955 PF07715 TonB-dependent Receptor Plug Domain ACEE_00955 PF00593 TonB dependent receptor ACEE_00960 PF00800 Prephenate dehydratase ACEE_00960 PF01817 Chorismate mutase type II ACEE_00965 PF01432 Peptidase family M3 ACEE_00970 PF07715 TonB-dependent Receptor Plug Domain ACEE_00970 PF00593 TonB dependent receptor ACEE_00975 PF04055 Radical SAM superfamily ACEE_00980 PF01228 Glycine radical ACEE_00980 PF02901 Pyruvate formate lyase-like ACEE_00985 PF01226 Formate/nitrite transporter ACEE_00995 PF01435 Peptidase family M48 ACEE_01000 PF11799 impB/mucB/samB family C-terminal domain ACEE_01000 PF00817 impB/mucB/samB family ACEE_01000 PF11798 IMS family HHH motif ACEE_01005 PF03956 Lysine exporter LysO ACEE_01010 PF00425 chorismate binding enzyme ACEE_01015 PF00155 Aminotransferase class I and II ACEE_01020 PF00892 EamA-like transporter family ACEE_01025 PF00892 EamA-like transporter family ACEE_01030 PF18074 Primosomal protein N C-terminal domain ACEE_01030 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ACEE_01030 PF00270 DEAD/DEAH box helicase ACEE_01030 PF00271 Helicase conserved C-terminal domain ACEE_01030 PF17764 3′ DNA-binding domain (3′BD) ACEE_01035 PF02698 DUF218 domain ACEE_01045 PF08666 SAF domain ACEE_01045 PF03102 NeuB family ACEE_01050 PF13472 GDSL-like Lipase/Acylhydrolase family ACEE_01050 PF02348 Cytidylyltransferase ACEE_01055 PF02350 UDP-N-acetylglucosamine 2-epimerase ACEE_01060 PF01943 Polysaccharide biosynthesis protein ACEE_01065 PF07922 Glycosyltransferase family 52 ACEE_01070 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) ACEE_01080 PF00535 Glycosyl transferase family 2 ACEE_01085 PF00535 Glycosyl transferase family 2 ACEE_01090 PF01641 SelR domain ACEE_01090 PF01625 Peptide methionine sulfoxide reductase ACEE_01100 PF07670 Nucleoside recognition ACEE_01100 PF07662 Na+ dependent nucleoside transporter C-terminus ACEE_01100 PF01773 Na+ dependent nucleoside transporter N-terminus ACEE_01105 PF01791 DeoC/LacD family aldolase ACEE_01110 PF01048 Phosphorylase superfamily ACEE_01115 PF01118 Semialdehyde dehydrogenase, NAD binding domain ACEE_01120 PF00696 Amino acid kinase family ACEE_01125 PF00202 Aminotransferase class-III ACEE_01135 PF00593 TonB dependent receptor ACEE_01135 PF07715 TonB-dependent Receptor Plug Domain ACEE_01140 PF07497 Rho termination factor, RNA-binding domain ACEE_01140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACEE_01140 PF07498 Rho termination factor, N-terminal domain ACEE_01145 PF00291 Pyridoxal-phosphate dependent enzyme ACEE_01150 PF08544 GHMP kinases C terminal ACEE_01150 PF00288 GHMP kinases N terminal domain ACEE_01155 PF00696 Amino acid kinase family ACEE_01155 PF01842 ACT domain ACEE_01155 PF13840 ACT domain ACEE_01155 PF00742 Homoserine dehydrogenase ACEE_01155 PF03447 Homoserine dehydrogenase, NAD binding domain ACEE_01165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ACEE_01165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ACEE_01170 PF00842 Alanine racemase, C-terminal domain ACEE_01170 PF01168 Alanine racemase, N-terminal domain ACEE_01175 PF13538 UvrD-like helicase C-terminal domain ACEE_01205 PF07687 Peptidase dimerisation domain ACEE_01205 PF01546 Peptidase family M20/M25/M40 ACEE_01210 PF00156 Phosphoribosyl transferase domain ACEE_01215 PF00625 Guanylate kinase ACEE_01220 PF02321 Outer membrane efflux protein ACEE_01225 PF03658 RnfH family Ubiquitin ACEE_01230 PF03364 Polyketide cyclase / dehydrase and lipid transport ACEE_01235 PF00005 ABC transporter ACEE_01235 PF03459 TOBE domain ACEE_01240 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_01250 PF01061 ABC-2 type transporter ACEE_01255 PF00005 ABC transporter ACEE_01260 PF12169 DNA polymerase III subunits gamma and tau domain III ACEE_01260 PF12170 DNA polymerase III tau subunit V interacting with alpha ACEE_01265 PF00156 Phosphoribosyl transferase domain ACEE_01275 PF01042 Endoribonuclease L-PSP ACEE_01280 PF00291 Pyridoxal-phosphate dependent enzyme ACEE_01285 PF04073 Aminoacyl-tRNA editing domain ACEE_01290 PF00005 ABC transporter ACEE_01295 PF01297 Zinc-uptake complex component A periplasmic ACEE_01300 PF04358 DsrC like protein ACEE_01305 PF01027 Inhibitor of apoptosis-promoting Bax1 ACEE_01310 PF01066 CDP-alcohol phosphatidyltransferase ACEE_01320 PF08459 UvrC Helix-hairpin-helix N-terminal ACEE_01320 PF01541 GIY-YIG catalytic domain ACEE_01320 PF02151 UvrB/uvrC motif ACEE_01330 PF00860 Permease family ACEE_01335 PF00085 Thioredoxin ACEE_01340 PF01145 SPFH domain / Band 7 family ACEE_01345 PF01145 SPFH domain / Band 7 family ACEE_01350 PF00709 Adenylosuccinate synthetase ACEE_01355 PF02568 Thiamine biosynthesis protein (ThiI) ACEE_01355 PF02926 THUMP domain ACEE_01360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACEE_01375 PF13173 AAA domain ACEE_01375 PF13635 Domain of unknown function (DUF4143) ACEE_01400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_01400 PF03466 LysR substrate binding domain ACEE_01410 PF02545 Maf-like protein ACEE_01415 PF00860 Permease family ACEE_01420 PF00210 Ferritin-like domain ACEE_01425 PF00210 Ferritin-like domain ACEE_01430 PF02355 Protein export membrane protein ACEE_01430 PF07549 SecD/SecF GG Motif ACEE_01435 PF02355 Protein export membrane protein ACEE_01435 PF07549 SecD/SecF GG Motif ACEE_01435 PF13721 SecD export protein N-terminal TM region ACEE_01445 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) ACEE_01455 PF00521 DNA gyrase/topoisomerase IV, subunit A ACEE_01455 PF03989 DNA gyrase C-terminal domain, beta-propeller ACEE_01475 PF00899 ThiF family ACEE_01480 PF00465 Iron-containing alcohol dehydrogenase ACEE_01480 PF00171 Aldehyde dehydrogenase family ACEE_01485 PF03900 Porphobilinogen deaminase, C-terminal domain ACEE_01485 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ACEE_01490 PF02602 Uroporphyrinogen-III synthase HemD ACEE_01495 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase ACEE_01500 PF07219 HemY protein N-terminus ACEE_01505 PF05661 Protein of unknown function (DUF808) ACEE_01510 PF00312 Ribosomal protein S15 ACEE_01515 PF00999 Sodium/hydrogen exchanger family ACEE_01520 PF13145 PPIC-type PPIASE domain ACEE_01525 PF01914 MarC family integral membrane protein ACEE_01530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_01535 PF10609 NUBPL iron-transfer P-loop NTPase ACEE_01560 PF02384 N-6 DNA Methylase ACEE_01565 PF07669 Eco57I restriction-modification methylase ACEE_01590 PF00703 Glycosyl hydrolases family 2 ACEE_01590 PF02837 Glycosyl hydrolases family 2, sugar binding domain ACEE_01590 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ACEE_01590 PF16353 Domain of unknown function(DUF4981) ACEE_01590 PF02929 Beta galactosidase small chain ACEE_01595 PF01263 Aldose 1-epimerase ACEE_01600 PF10509 Galactokinase galactose-binding signature ACEE_01600 PF08544 GHMP kinases C terminal ACEE_01600 PF00288 GHMP kinases N terminal domain ACEE_01605 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain ACEE_01605 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain ACEE_01615 PF00512 His Kinase A (phospho-acceptor) domain ACEE_01615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACEE_01615 PF08521 Two-component sensor kinase N-terminal ACEE_01620 PF00486 Transcriptional regulatory protein, C terminal ACEE_01620 PF00072 Response regulator receiver domain ACEE_01630 PF04076 Bacterial OB fold (BOF) protein ACEE_01640 PF00464 Serine hydroxymethyltransferase ACEE_01645 PF01513 ATP-NAD kinase ACEE_01650 PF18019 HD domain ACEE_01655 PF01867 CRISPR associated protein Cas1 ACEE_01665 PF09615 CRISPR-associated protein (Cas_Csy3) ACEE_01670 PF09614 CRISPR-associated protein (Cas_Csy2) ACEE_01680 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACEE_01680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACEE_01680 PF03129 Anticodon binding domain ACEE_01680 PF02824 TGS domain ACEE_01685 PF03783 Curli production assembly/transport component CsgG ACEE_01695 PF05643 Putative bacterial lipoprotein (DUF799) ACEE_01700 PF05198 Translation initiation factor IF-3, N-terminal domain ACEE_01700 PF00707 Translation initiation factor IF-3, C-terminal domain ACEE_01705 PF01632 Ribosomal protein L35 ACEE_01710 PF00453 Ribosomal protein L20 ACEE_01725 PF00571 CBS domain ACEE_01725 PF03471 Transporter associated domain ACEE_01725 PF01595 Cyclin M transmembrane N-terminal domain ACEE_01730 PF00849 RNA pseudouridylate synthase ACEE_01735 PF00300 Histidine phosphatase superfamily (branch 1) ACEE_01740 PF03652 Holliday junction resolvase ACEE_01745 PF02622 Uncharacterized ACR, COG1678 ACEE_01750 PF04452 RNA methyltransferase ACEE_01760 PF00268 Ribonucleotide reductase, small chain ACEE_01765 PF00317 Ribonucleotide reductase, all-alpha domain ACEE_01765 PF02867 Ribonucleotide reductase, barrel domain ACEE_01765 PF03477 ATP cone domain ACEE_01770 PF00149 Calcineurin-like phosphoesterase ACEE_01775 PF00199 Catalase ACEE_01775 PF06628 Catalase-related immune-responsive ACEE_01780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACEE_01780 PF00183 Hsp90 protein ACEE_01785 PF01053 Cys/Met metabolism PLP-dependent enzyme ACEE_01790 PF02600 Disulfide bond formation protein DsbB ACEE_01795 PF06450 Bacterial Na+/H+ antiporter B (NhaB) ACEE_01800 PF07840 FadR C-terminal domain ACEE_01800 PF00392 Bacterial regulatory proteins, gntR family ACEE_01805 PF02562 PhoH-like protein ACEE_01810 PF02779 Transketolase, pyrimidine binding domain ACEE_01810 PF02780 Transketolase, C-terminal domain ACEE_01810 PF00456 Transketolase, thiamine diphosphate binding domain ACEE_01815 PF01197 Ribosomal protein L31 ACEE_01825 PF03466 LysR substrate binding domain ACEE_01825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_01830 PF03372 Endonuclease/Exonuclease/phosphatase family ACEE_01835 PF03553 Na+/H+ antiporter family ACEE_01835 PF13726 Na+-H+ antiporter family ACEE_01845 PF01171 PP-loop family ACEE_01850 PF04217 Protein of unknown function, DUF412 ACEE_01860 PF04279 Intracellular septation protein A ACEE_01865 PF03061 Thioesterase superfamily ACEE_01870 PF03795 YCII-related domain ACEE_01875 PF03710 Glutamate-ammonia ligase adenylyltransferase ACEE_01875 PF08335 GlnD PII-uridylyltransferase ACEE_01880 PF06062 Uncharacterised protein family (UPF0231) ACEE_01885 PF03616 Sodium/glutamate symporter ACEE_01890 PF02080 TrkA-C domain ACEE_01890 PF06826 Predicted Permease Membrane Region ACEE_01895 PF04220 Der GTPase activator (YihI) ACEE_01900 PF10675 Protein of unknown function (DUF2489) ACEE_01905 PF04055 Radical SAM superfamily ACEE_01905 PF06969 HemN C-terminal domain ACEE_01910 PF03968 OstA-like protein ACEE_01910 PF04453 LPS transport system D ACEE_01915 PF17287 POTRA domain ACEE_01915 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ACEE_01915 PF08479 POTRA domain, ShlB-type ACEE_01920 PF05860 haemagglutination activity domain ACEE_01920 PF13018 Extended Signal Peptide of Type V secretion system ACEE_01920 PF04829 Pre-toxin domain with VENN motif ACEE_01920 PF13332 Hemagglutinin repeat ACEE_01955 PF02142 MGS-like domain ACEE_01955 PF01808 AICARFT/IMPCHase bienzyme ACEE_01965 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family ACEE_01970 PF03449 Transcription elongation factor, N-terminal ACEE_01970 PF01272 Transcription elongation factor, GreA/GreB, C-term ACEE_01975 PF05175 Methyltransferase small domain ACEE_01980 PF00202 Aminotransferase class-III ACEE_01985 PF00155 Aminotransferase class I and II ACEE_01990 PF04301 Protein of unknown function (DUF452) ACEE_01995 PF08241 Methyltransferase domain ACEE_02005 PF01713 Smr domain ACEE_02015 PF00072 Response regulator receiver domain ACEE_02015 PF00989 PAS fold ACEE_02015 PF18415 Histidine kinase receptor ArcB trans-membrane domain ACEE_02015 PF01627 Hpt domain ACEE_02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACEE_02015 PF00512 His Kinase A (phospho-acceptor) domain ACEE_02020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ACEE_02020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ACEE_02025 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) ACEE_02030 PF02082 Transcriptional regulator ACEE_02035 PF00266 Aminotransferase class-V ACEE_02040 PF01592 NifU-like N terminal domain ACEE_02045 PF01521 Iron-sulphur cluster biosynthesis ACEE_02050 PF07743 HSCB C-terminal oligomerisation domain ACEE_02060 PF10946 Protein of unknown function DUF2625 ACEE_02065 PF00012 Hsp70 protein ACEE_02070 PF00111 2Fe-2S iron-sulfur cluster binding domain ACEE_02075 PF04384 Iron-sulphur cluster assembly ACEE_02080 PF00593 TonB dependent receptor ACEE_02080 PF07715 TonB-dependent Receptor Plug Domain ACEE_02085 PF01743 Poly A polymerase head domain ACEE_02085 PF01966 HD domain ACEE_02085 PF12627 Probable RNA and SrmB- binding site of polymerase A ACEE_02090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACEE_02095 PF01406 tRNA synthetases class I (C) catalytic domain ACEE_02095 PF09190 DALR domain ACEE_02100 PF00005 ABC transporter ACEE_02100 PF09383 NIL domain ACEE_02105 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_02110 PF03180 NLPA lipoprotein ACEE_02115 PF03180 NLPA lipoprotein ACEE_02120 PF03180 NLPA lipoprotein ACEE_02125 PF03466 LysR substrate binding domain ACEE_02125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_02130 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ACEE_02135 PF00132 Bacterial transferase hexapeptide (six repeats) ACEE_02135 PF12464 Maltose acetyltransferase ACEE_02150 PF01227 GTP cyclohydrolase I ACEE_02155 PF01416 tRNA pseudouridine synthase ACEE_02160 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ACEE_02165 PF03279 Bacterial lipid A biosynthesis acyltransferase ACEE_02170 PF00701 Dihydrodipicolinate synthetase family ACEE_02180 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ACEE_02180 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ACEE_02195 PF04536 TPM domain ACEE_02205 PF04011 LemA family ACEE_02210 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ACEE_02215 PF00294 pfkB family carbohydrate kinase ACEE_02220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACEE_02220 PF00381 PTS HPr component phosphorylation site ACEE_02225 PF02806 Alpha amylase, C-terminal all-beta domain ACEE_02225 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACEE_02225 PF00128 Alpha amylase, catalytic domain ACEE_02230 PF00128 Alpha amylase, catalytic domain ACEE_02230 PF18390 Glycogen debranching enzyme C-terminal domain ACEE_02230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ACEE_02235 PF00483 Nucleotidyl transferase ACEE_02240 PF08323 Starch synthase catalytic domain ACEE_02240 PF00534 Glycosyl transferases group 1 ACEE_02245 PF00343 Carbohydrate phosphorylase ACEE_02250 PF00334 Nucleoside diphosphate kinase ACEE_02255 PF01588 Putative tRNA binding domain ACEE_02255 PF08264 Anticodon-binding domain of tRNA ACEE_02255 PF09334 tRNA synthetases class I (M) ACEE_02265 PF13378 Enolase C-terminal domain-like ACEE_02270 PF01479 S4 domain ACEE_02270 PF00849 RNA pseudouridylate synthase ACEE_02275 PF07690 Major Facilitator Superfamily ACEE_02290 PF01261 Xylose isomerase-like TIM barrel ACEE_02295 PF00877 NlpC/P60 family ACEE_02300 PF00717 Peptidase S24-like ACEE_02305 PF01228 Glycine radical ACEE_02310 PF03167 Uracil DNA glycosylase superfamily ACEE_02320 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ACEE_02320 PF00271 Helicase conserved C-terminal domain ACEE_02320 PF04408 Helicase associated domain (HA2) ACEE_02320 PF00270 DEAD/DEAH box helicase ACEE_02320 PF11898 Domain of unknown function (DUF3418) ACEE_02325 PF04284 Protein of unknown function (DUF441) ACEE_02330 PF01025 GrpE ACEE_02335 PF13416 Bacterial extracellular solute-binding protein ACEE_02340 PF01554 MatE ACEE_02345 PF13361 UvrD-like helicase C-terminal domain ACEE_02345 PF00580 UvrD/REP helicase N-terminal domain ACEE_02345 PF12705 PD-(D/E)XK nuclease superfamily ACEE_02350 PF07662 Na+ dependent nucleoside transporter C-terminus ACEE_02350 PF07670 Nucleoside recognition ACEE_02350 PF01773 Na+ dependent nucleoside transporter N-terminus ACEE_02355 PF04055 Radical SAM superfamily ACEE_02360 PF11230 Protein of unknown function (DUF3029) ACEE_02365 PF00795 Carbon-nitrogen hydrolase ACEE_02370 PF03471 Transporter associated domain ACEE_02370 PF00571 CBS domain ACEE_02375 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) ACEE_02380 PF00230 Major intrinsic protein ACEE_02385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACEE_02385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ACEE_02390 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ACEE_02390 PF00132 Bacterial transferase hexapeptide (six repeats) ACEE_02395 PF07977 FabA-like domain ACEE_02400 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ACEE_02400 PF00132 Bacterial transferase hexapeptide (six repeats) ACEE_02410 PF01103 Surface antigen ACEE_02410 PF07244 Surface antigen variable number repeat ACEE_02415 PF02163 Peptidase family M50 ACEE_02425 PF01255 Putative undecaprenyl diphosphate synthase ACEE_02430 PF00753 Metallo-beta-lactamase superfamily ACEE_02430 PF16123 Hydroxyacylglutathione hydrolase C-terminus ACEE_02435 PF00480 ROK family ACEE_02440 PF01569 PAP2 superfamily ACEE_02445 PF01985 CRS1 / YhbY (CRM) domain ACEE_02450 PF00535 Glycosyl transferase family 2 ACEE_02455 PF00768 D-alanyl-D-alanine carboxypeptidase ACEE_02460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACEE_02465 PF00764 Arginosuccinate synthase ACEE_02470 PF00075 RNase H ACEE_02475 PF02674 Colicin V production protein ACEE_02480 PF00156 Phosphoribosyl transferase domain ACEE_02490 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACEE_02490 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ACEE_02495 PF04355 SmpA / OmlA family ACEE_02500 PF04245 37-kD nucleoid-associated bacterial protein ACEE_02505 PF01042 Endoribonuclease L-PSP ACEE_02520 PF00589 Phage integrase family ACEE_02520 PF13356 Arm DNA-binding domain ACEE_02590 PF07119 Protein of unknown function (DUF1375) ACEE_02595 PF00180 Isocitrate/isopropylmalate dehydrogenase ACEE_02600 PF01641 SelR domain ACEE_02605 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ACEE_02605 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ACEE_02615 PF04085 rod shape-determining protein MreC ACEE_02620 PF04093 rod shape-determining protein MreD ACEE_02625 PF16193 AAA C-terminal domain ACEE_02625 PF12002 MgsA AAA+ ATPase C terminal ACEE_02625 PF00004 ATPase family associated with various cellular activities (AAA) ACEE_02630 PF00950 ABC 3 transport family ACEE_02635 PF13230 Glutamine amidotransferases class-II ACEE_02640 PF02542 YgbB family ACEE_02645 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACEE_02650 PF04977 Septum formation initiator ACEE_02655 PF01293 Phosphoenolpyruvate carboxykinase ACEE_02660 PF00549 CoA-ligase ACEE_02660 PF02629 CoA binding domain ACEE_02665 PF00549 CoA-ligase ACEE_02665 PF08442 ATP-grasp domain ACEE_02670 PF04393 Protein of unknown function (DUF535) ACEE_02675 PF02817 e3 binding domain ACEE_02675 PF00364 Biotin-requiring enzyme ACEE_02675 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACEE_02680 PF16870 2-oxoglutarate dehydrogenase C-terminal ACEE_02680 PF00676 Dehydrogenase E1 component ACEE_02680 PF16078 2-oxoglutarate dehydrogenase N-terminus ACEE_02680 PF02779 Transketolase, pyrimidine binding domain ACEE_02685 PF00005 ABC transporter ACEE_02690 PF04225 Opacity-associated protein A LysM-like domain ACEE_02690 PF01551 Peptidase family M23 ACEE_02695 PF10411 Disulfide bond isomerase protein N-terminus ACEE_02695 PF13098 Thioredoxin-like domain ACEE_02700 PF01368 DHH family ACEE_02700 PF17768 RecJ OB domain ACEE_02700 PF02272 DHHA1 domain ACEE_02705 PF01389 OmpA-like transmembrane domain ACEE_02705 PF00691 OmpA family ACEE_02715 PF07730 Histidine kinase ACEE_02715 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ACEE_02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACEE_02715 PF00672 HAMP domain ACEE_02720 PF00583 Acetyltransferase (GNAT) family ACEE_02725 PF01725 Ham1 family ACEE_02730 PF01906 Putative heavy-metal-binding ACEE_02735 PF01268 Formate--tetrahydrofolate ligase ACEE_02740 PF03692 Putative zinc- or iron-chelating domain ACEE_02745 PF00106 short chain dehydrogenase ACEE_02750 PF00291 Pyridoxal-phosphate dependent enzyme ACEE_02755 PF00290 Tryptophan synthase alpha chain ACEE_02765 PF06733 DEAD_2 ACEE_02765 PF13307 Helicase C-terminal domain ACEE_02770 PF03788 LrgA family ACEE_02775 PF04172 LrgB-like family ACEE_02780 PF00005 ABC transporter ACEE_02780 PF00664 ABC transporter transmembrane region ACEE_02785 PF03550 Outer membrane lipoprotein LolB ACEE_02790 PF08544 GHMP kinases C terminal ACEE_02790 PF00288 GHMP kinases N terminal domain ACEE_02795 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ACEE_02795 PF14572 Phosphoribosyl synthetase-associated domain ACEE_02800 PF01180 Dihydroorotate dehydrogenase ACEE_02805 PF17831 Pyruvate dehydrogenase E1 component middle domain ACEE_02805 PF00456 Transketolase, thiamine diphosphate binding domain ACEE_02810 PF02817 e3 binding domain ACEE_02810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ACEE_02810 PF00364 Biotin-requiring enzyme ACEE_02815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ACEE_02815 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACEE_02830 PF13356 Arm DNA-binding domain ACEE_02830 PF00589 Phage integrase family ACEE_02860 PF00436 Single-strand binding protein family ACEE_02870 PF05840 Bacteriophage replication gene A protein (GPA) ACEE_03010 PF10124 Mu-like prophage major head subunit gpT ACEE_03015 PF10123 Mu-like prophage I protein ACEE_03020 PF05069 Phage virion morphogenesis family ACEE_03030 PF06074 Protein of unknown function (DUF935) ACEE_03070 PF10841 Protein of unknown function (DUF2644) ACEE_03075 PF01510 N-acetylmuramoyl-L-alanine amidase ACEE_03125 PF07352 Bacteriophage Mu Gam like protein ACEE_03150 PF13401 AAA domain ACEE_03150 PF09077 Mu B transposition protein, C terminal ACEE_03160 PF13693 Winged helix-turn-helix DNA-binding ACEE_03165 PF01381 Helix-turn-helix ACEE_03165 PF00717 Peptidase S24-like ACEE_03190 PF00149 Calcineurin-like phosphoesterase ACEE_03190 PF02872 5'-nucleotidase, C-terminal domain ACEE_03195 PF01219 Prokaryotic diacylglycerol kinase ACEE_03200 PF00375 Sodium:dicarboxylate symporter family ACEE_03205 PF03772 Competence protein ACEE_03205 PF13567 Domain of unknown function (DUF4131) ACEE_03205 PF00753 Metallo-beta-lactamase superfamily ACEE_03210 PF02547 Queuosine biosynthesis protein ACEE_03215 PF01933 Uncharacterised protein family UPF0052 ACEE_03220 PF01594 AI-2E family transporter ACEE_03225 PF13649 Methyltransferase domain ACEE_03230 PF03889 Alternative ribosome-rescue factor A ACEE_03240 PF00149 Calcineurin-like phosphoesterase ACEE_03245 PF04172 LrgB-like family ACEE_03250 PF03788 LrgA family ACEE_03255 PF00575 S1 RNA binding domain ACEE_03255 PF08206 Ribonuclease B OB domain ACEE_03255 PF00773 RNB domain ACEE_03260 PF06291 Bor protein ACEE_03265 PF06291 Bor protein ACEE_03275 PF13649 Methyltransferase domain ACEE_03280 PF00561 alpha/beta hydrolase fold ACEE_03285 PF17206 SeqA protein N-terminal domain ACEE_03285 PF03925 SeqA protein C-terminal domain ACEE_03290 PF00501 AMP-binding enzyme ACEE_03295 PF12795 Mechanosensitive ion channel porin domain ACEE_03295 PF00924 Mechanosensitive ion channel ACEE_03295 PF12794 Mechanosensitive ion channel inner membrane domain 1 ACEE_03300 PF00924 Mechanosensitive ion channel ACEE_03300 PF12794 Mechanosensitive ion channel inner membrane domain 1 ACEE_03300 PF12795 Mechanosensitive ion channel porin domain ACEE_03305 PF01264 Chorismate synthase ACEE_03310 PF03411 Penicillin-insensitive murein endopeptidase ACEE_03315 PF00245 Alkaline phosphatase ACEE_03320 PF01751 Toprim domain ACEE_03320 PF01131 DNA topoisomerase ACEE_03325 PF03840 Preprotein translocase SecG subunit ACEE_03340 PF13180 PDZ domain ACEE_03345 PF02224 Cytidylate kinase ACEE_03350 PF00575 S1 RNA binding domain ACEE_03355 PF00216 Bacterial DNA-binding protein ACEE_03360 PF06305 Lipopolysaccharide assembly protein A domain ACEE_03365 PF18073 Rubredoxin metal binding domain ACEE_03370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACEE_03375 PF01253 Translation initiation factor SUI1 ACEE_03385 PF04474 Protein of unknown function (DUF554) ACEE_03390 PF02441 Flavoprotein ACEE_03395 PF04247 Invasion gene expression up-regulator, SirB ACEE_03400 PF04751 Protein of unknown function (DUF615) ACEE_03405 PF01523 Putative modulator of DNA gyrase ACEE_03410 PF10369 Small subunit of acetolactate synthase ACEE_03415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACEE_03415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACEE_03415 PF00205 Thiamine pyrophosphate enzyme, central domain ACEE_03420 PF00484 Carbonic anhydrase ACEE_03425 PF00313 'Cold-shock' DNA-binding domain ACEE_03430 PF07273 Protein of unknown function (DUF1439) ACEE_03440 PF01702 Queuine tRNA-ribosyltransferase ACEE_03445 PF01814 Hemerythrin HHE cation binding domain ACEE_03450 PF08239 Bacterial SH3 domain ACEE_03455 PF01384 Phosphate transporter family ACEE_03460 PF01865 Protein of unknown function DUF47 ACEE_03465 PF00005 ABC transporter ACEE_03470 PF01032 FecCD transport family ACEE_03475 PF01032 FecCD transport family ACEE_03480 PF01497 Periplasmic binding protein ACEE_03485 PF00772 DnaB-like helicase N terminal domain ACEE_03485 PF03796 DnaB-like helicase C terminal domain ACEE_03490 PF05166 YcgL domain ACEE_03495 PF03477 ATP cone domain ACEE_03500 PF00696 Amino acid kinase family ACEE_03500 PF01842 ACT domain ACEE_03505 PF04363 Protein of unknown function (DUF496) ACEE_03510 PF02541 Ppx/GppA phosphatase family ACEE_03515 PF04074 YhcH/YjgK/YiaL ACEE_03520 PF01418 Helix-turn-helix domain, rpiR family ACEE_03520 PF01380 SIS domain ACEE_03525 PF00266 Aminotransferase class-V ACEE_03530 PF00155 Aminotransferase class I and II ACEE_03535 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ACEE_03540 PF00696 Amino acid kinase family ACEE_03540 PF00583 Acetyltransferase (GNAT) family ACEE_03545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_03545 PF03466 LysR substrate binding domain ACEE_03550 PF01396 Topoisomerase DNA binding C4 zinc finger ACEE_03550 PF01751 Toprim domain ACEE_03550 PF01131 DNA topoisomerase ACEE_03550 PF08272 Topoisomerase I zinc-ribbon-like ACEE_03555 PF05127 Helicase ACEE_03555 PF13718 GNAT acetyltransferase 2 ACEE_03555 PF17176 tRNA-binding domain ACEE_03560 PF02130 Uncharacterized protein family UPF0054 ACEE_03565 PF02391 MoaE protein ACEE_03570 PF02597 ThiS family ACEE_03575 PF01967 MoaC family ACEE_03580 PF04055 Radical SAM superfamily ACEE_03580 PF06463 Molybdenum Cofactor Synthesis C ACEE_03585 PF03264 NapC/NirT cytochrome c family, N-terminal region ACEE_03590 PF01568 Molydopterin dinucleotide binding domain ACEE_03590 PF18364 Molybdopterin oxidoreductase N-terminal domain ACEE_03590 PF00384 Molybdopterin oxidoreductase ACEE_03595 PF04241 Protein of unknown function (DUF423) ACEE_03605 PF01728 FtsJ-like methyltransferase ACEE_03605 PF18125 RlmM ferredoxin-like domain ACEE_03610 PF01113 Dihydrodipicolinate reductase, N-terminus ACEE_03610 PF05173 Dihydrodipicolinate reductase, C-terminus ACEE_03615 PF01053 Cys/Met metabolism PLP-dependent enzyme ACEE_03620 PF01501 Glycosyl transferase family 8 ACEE_03620 PF00535 Glycosyl transferase family 2 ACEE_03625 PF00156 Phosphoribosyl transferase domain ACEE_03630 PF01464 Transglycosylase SLT domain ACEE_03630 PF14718 Soluble lytic murein transglycosylase L domain ACEE_03635 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ACEE_03635 PF08479 POTRA domain, ShlB-type ACEE_03635 PF17287 POTRA domain ACEE_03640 PF13018 Extended Signal Peptide of Type V secretion system ACEE_03640 PF02661 Fic/DOC family ACEE_03640 PF13332 Hemagglutinin repeat ACEE_03640 PF05860 haemagglutination activity domain ACEE_03640 PF03543 Yersinia/Haemophilus virulence surface antigen ACEE_03650 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ACEE_03650 PF00749 tRNA synthetases class I (E and Q), catalytic domain ACEE_03655 PF08207 Elongation factor P (EF-P) KOW-like domain ACEE_03655 PF09285 Elongation factor P, C-terminal ACEE_03655 PF01132 Elongation factor P (EF-P) OB domain ACEE_03665 PF04055 Radical SAM superfamily ACEE_03670 PF00152 tRNA synthetases class II (D, K and N) ACEE_03670 PF01336 OB-fold nucleic acid binding domain ACEE_03675 PF00929 Exonuclease ACEE_03675 PF08411 Exonuclease C-terminal ACEE_03685 PF02811 PHP domain ACEE_03695 PF04261 Dyp-type peroxidase family ACEE_03695 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACEE_03700 PF09375 Imelysin ACEE_03705 PF17757 UvrB interaction domain ACEE_03705 PF12344 Ultra-violet resistance protein B ACEE_03705 PF02151 UvrB/uvrC motif ACEE_03705 PF04851 Type III restriction enzyme, res subunit ACEE_03705 PF00271 Helicase conserved C-terminal domain ACEE_03715 PF00557 Metallopeptidase family M24 ACEE_03715 PF05195 Aminopeptidase P, N-terminal domain ACEE_03720 PF00155 Aminotransferase class I and II ACEE_03725 PF02222 ATP-grasp domain ACEE_03725 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ACEE_03730 PF17763 Glutaminase/Asparaginase C-terminal domain ACEE_03730 PF00710 Asparaginase, N-terminal ACEE_03735 PF00731 AIR carboxylase ACEE_03740 PF00043 Glutathione S-transferase, C-terminal domain ACEE_03740 PF02798 Glutathione S-transferase, N-terminal domain ACEE_03745 PF04386 Stringent starvation protein B ACEE_03750 PF00325 Bacterial regulatory proteins, crp family ACEE_03750 PF00027 Cyclic nucleotide-binding domain ACEE_03755 PF00582 Universal stress protein family ACEE_03760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ACEE_03760 PF02272 DHHA1 domain ACEE_03760 PF01411 tRNA synthetases class II (A) ACEE_03765 PF02599 Global regulator protein family ACEE_03770 PF00483 Nucleotidyl transferase ACEE_03780 PF13609 Gram-negative porin ACEE_03910 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ACEE_03915 PF00149 Calcineurin-like phosphoesterase ACEE_03915 PF02872 5'-nucleotidase, C-terminal domain ACEE_03920 PF00871 Acetokinase family ACEE_03925 PF01515 Phosphate acetyl/butaryl transferase ACEE_03925 PF07085 DRTGG domain ACEE_03930 PF07411 Domain of unknown function (DUF1508) ACEE_03935 PF01565 FAD binding domain ACEE_03935 PF09330 D-lactate dehydrogenase, membrane binding ACEE_03940 PF13406 Transglycosylase SLT domain ACEE_03945 PF09157 Pseudouridine synthase II TruB, C-terminal ACEE_03945 PF01509 TruB family pseudouridylate synthase (N terminal domain) ACEE_03945 PF16198 tRNA pseudouridylate synthase B C-terminal domain ACEE_03950 PF02033 Ribosome-binding factor A ACEE_03955 PF04760 Translation initiation factor IF-2, N-terminal region ACEE_03955 PF11987 Translation-initiation factor 2 ACEE_03955 PF00009 Elongation factor Tu GTP binding domain ACEE_03960 PF08529 NusA N-terminal domain ACEE_03960 PF00575 S1 RNA binding domain ACEE_03960 PF13184 NusA-like KH domain ACEE_03965 PF02576 RimP N-terminal domain ACEE_03965 PF17384 RimP C-terminal SH3 domain ACEE_03975 PF08245 Mur ligase middle domain ACEE_03980 PF17848 Acetyl-coA carboxylase zinc finger domain ACEE_03980 PF01039 Carboxyl transferase domain ACEE_03990 PF03819 MazG nucleotide pyrophosphohydrolase domain ACEE_03995 PF00486 Transcriptional regulatory protein, C terminal ACEE_03995 PF00072 Response regulator receiver domain ACEE_04000 PF00512 His Kinase A (phospho-acceptor) domain ACEE_04000 PF00672 HAMP domain ACEE_04000 PF16527 Two-component sensor protein CpxA, periplasmic domain ACEE_04000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACEE_04005 PF12704 MacB-like periplasmic core domain ACEE_04005 PF00005 ABC transporter ACEE_04005 PF02687 FtsX-like permease family ACEE_04010 PF01784 NIF3 (NGG1p interacting factor 3) ACEE_04015 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded ACEE_04020 PF06005 Cell division protein ZapB ACEE_04025 PF00265 Thymidine kinase ACEE_04030 PF00814 Glycoprotease family ACEE_04035 PF00793 DAHP synthetase I family ACEE_04040 PF04228 Putative neutral zinc metallopeptidase ACEE_04045 PF17854 FtsK alpha domain ACEE_04045 PF01580 FtsK/SpoIIIE family ACEE_04045 PF09397 Ftsk gamma domain ACEE_04045 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ACEE_04050 PF01037 Lrp/AsnC ligand binding domain ACEE_04055 PF01612 3'-5' exonuclease ACEE_04055 PF00570 HRDC domain ACEE_04060 PF00480 ROK family ACEE_04060 PF01047 MarR family ACEE_04070 PF00877 NlpC/P60 family ACEE_04075 PF00216 Bacterial DNA-binding protein ACEE_04080 PF03483 B3/4 domain ACEE_04080 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ACEE_04080 PF03147 Ferredoxin-fold anticodon binding domain ACEE_04080 PF01588 Putative tRNA binding domain ACEE_04080 PF03484 tRNA synthetase B5 domain ACEE_04085 PF01409 tRNA synthetases class II core domain (F) ACEE_04085 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ACEE_04090 PF00881 Nitroreductase family ACEE_04095 PF00375 Sodium:dicarboxylate symporter family ACEE_04100 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) ACEE_04105 PF16916 Dimerisation domain of Zinc Transporter ACEE_04105 PF01545 Cation efflux family ACEE_04115 PF03883 Peroxide stress protein YaaA ACEE_04125 PF00380 Ribosomal protein S9/S16 ACEE_04130 PF00572 Ribosomal protein L13 ACEE_04135 PF06295 Protein of unknown function (DUF1043) ACEE_04140 PF08335 GlnD PII-uridylyltransferase ACEE_04140 PF01966 HD domain ACEE_04145 PF03222 Tryptophan/tyrosine permease family ACEE_04150 PF03222 Tryptophan/tyrosine permease family ACEE_04155 PF17862 AAA+ lid domain ACEE_04155 PF06480 FtsH Extracellular ACEE_04155 PF00004 ATPase family associated with various cellular activities (AAA) ACEE_04155 PF01434 Peptidase family M41 ACEE_04160 PF01728 FtsJ-like methyltransferase ACEE_04165 PF00478 IMP dehydrogenase / GMP reductase domain ACEE_04165 PF00571 CBS domain ACEE_04170 PF00958 GMP synthase C terminal domain ACEE_04170 PF02540 NAD synthase ACEE_04170 PF00117 Glutamine amidotransferase class-I ACEE_04180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACEE_04180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACEE_04180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACEE_04180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACEE_04185 PF08942 Domain of unknown function (DUF1919) ACEE_04195 PF00132 Bacterial transferase hexapeptide (six repeats) ACEE_04195 PF12804 MobA-like NTP transferase domain ACEE_04200 PF00873 AcrB/AcrD/AcrF family ACEE_04205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACEE_04210 PF00440 Bacterial regulatory proteins, tetR family ACEE_04215 PF07208 Protein of unknown function (DUF1414) ACEE_04220 PF00884 Sulfatase ACEE_04220 PF11893 Domain of unknown function (DUF3413) ACEE_04225 PF04303 PrpF protein ACEE_04230 PF00939 Sodium:sulfate symporter transmembrane region ACEE_04235 PF00392 Bacterial regulatory proteins, gntR family ACEE_04235 PF07702 UTRA domain ACEE_04240 PF11791 Aconitate B N-terminal domain ACEE_04240 PF06434 Aconitate hydratase 2 N-terminus ACEE_04240 PF00330 Aconitase family (aconitate hydratase) ACEE_04245 PF07690 Major Facilitator Superfamily ACEE_04250 PF04310 MukB N-terminal ACEE_04250 PF16330 MukB hinge domain ACEE_04255 PF04288 MukE-like family ACEE_04260 PF17192 MukF middle domain ACEE_04260 PF17193 MukF C-terminal domain ACEE_04260 PF03882 MukF winged-helix domain ACEE_04265 PF00521 DNA gyrase/topoisomerase IV, subunit A ACEE_04265 PF03989 DNA gyrase C-terminal domain, beta-propeller ACEE_04270 PF00013 KH domain ACEE_04270 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ACEE_04270 PF01138 3' exoribonuclease family, domain 1 ACEE_04270 PF00575 S1 RNA binding domain ACEE_04270 PF03725 3' exoribonuclease family, domain 2 ACEE_04280 PF03880 DbpA RNA binding domain ACEE_04280 PF00270 DEAD/DEAH box helicase ACEE_04280 PF00271 Helicase conserved C-terminal domain ACEE_04285 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACEE_04290 PF01174 SNO glutamine amidotransferase family ACEE_04295 PF01680 SOR/SNZ family ACEE_04300 PF00155 Aminotransferase class I and II ACEE_04300 PF00392 Bacterial regulatory proteins, gntR family ACEE_04305 PF01765 Ribosome recycling factor ACEE_04310 PF00696 Amino acid kinase family ACEE_04315 PF00884 Sulfatase ACEE_04320 PF00889 Elongation factor TS ACEE_04325 PF00318 Ribosomal protein S2 ACEE_04335 PF06472 ABC transporter transmembrane region 2 ACEE_04335 PF00005 ABC transporter ACEE_04340 PF00593 TonB dependent receptor ACEE_04340 PF07715 TonB-dependent Receptor Plug Domain ACEE_04345 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_04355 PF05872 Bacterial protein of unknown function (DUF853) ACEE_04365 PF00270 DEAD/DEAH box helicase ACEE_04365 PF00271 Helicase conserved C-terminal domain ACEE_04390 PF04972 BON domain ACEE_04390 PF13629 Pilus formation protein N terminal region ACEE_04390 PF00263 Bacterial type II and III secretion system protein ACEE_04405 PF00437 Type II/IV secretion system protein ACEE_04440 PF02565 Recombination protein O C terminal ACEE_04440 PF11967 Recombination protein O N terminal ACEE_04445 PF07650 KH domain ACEE_04445 PF01926 50S ribosome-binding GTPase ACEE_04450 PF00035 Double-stranded RNA binding motif ACEE_04450 PF14622 Ribonuclease-III-like ACEE_04455 PF10502 Signal peptidase, peptidase S26 ACEE_04460 PF03144 Elongation factor Tu domain 2 ACEE_04460 PF00009 Elongation factor Tu GTP binding domain ACEE_04460 PF00679 Elongation factor G C-terminus ACEE_04460 PF06421 GTP-binding protein LepA C-terminus ACEE_04465 PF02581 Thiamine monophosphate synthase ACEE_04470 PF08543 Phosphomethylpyrimidine kinase ACEE_04475 PF09084 NMT1/THI5 like ACEE_04480 PF03070 TENA/THI-4/PQQC family ACEE_04485 PF06968 Biotin and Thiamin Synthesis associated domain ACEE_04485 PF04055 Radical SAM superfamily ACEE_04490 PF05690 Thiazole biosynthesis protein ThiG ACEE_04500 PF00899 ThiF family ACEE_04505 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_04510 PF00005 ABC transporter ACEE_04520 PF01235 Sodium:alanine symporter family ACEE_04525 PF03824 High-affinity nickel-transport protein ACEE_04530 PF06226 Protein of unknown function (DUF1007) ACEE_04535 PF01386 Ribosomal L25p family ACEE_04540 PF01515 Phosphate acetyl/butaryl transferase ACEE_04540 PF03949 Malic enzyme, NAD binding domain ACEE_04540 PF00390 Malic enzyme, N-terminal domain ACEE_04545 PF00939 Sodium:sulfate symporter transmembrane region ACEE_04550 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase ACEE_04550 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase ACEE_04555 PF04223 Citrate lyase, alpha subunit (CitF) ACEE_04560 PF03328 HpcH/HpaI aldolase/citrate lyase family ACEE_04565 PF06857 Malonate decarboxylase delta subunit (MdcD) ACEE_04570 PF02219 Methylenetetrahydrofolate reductase ACEE_04575 PF02698 DUF218 domain ACEE_04580 PF08443 RimK-like ATP-grasp domain ACEE_04580 PF18030 RimK PreATP-grasp domain ACEE_04585 PF00881 Nitroreductase family ACEE_04590 PF00912 Transglycosylase ACEE_04595 PF01371 Trp repressor protein ACEE_04600 PF03548 Outer membrane lipoprotein carrier protein LolA ACEE_04605 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ACEE_04605 PF01612 3'-5' exonuclease ACEE_04605 PF00476 DNA polymerase family A ACEE_04605 PF01367 5'-3' exonuclease, C-terminal SAM fold ACEE_04615 PF12441 CopG antitoxin of type II toxin-antitoxin system ACEE_04620 PF17755 UvrA DNA-binding domain ACEE_04620 PF17760 UvrA interaction domain ACEE_04625 PF00436 Single-strand binding protein family ACEE_04630 PF17483 C-lobe handle domain of Tf-binding protein B ACEE_04630 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B ACEE_04630 PF17484 N-Lobe handle Tf-binding protein B ACEE_04645 PF00884 Sulfatase ACEE_04650 PF00111 2Fe-2S iron-sulfur cluster binding domain ACEE_04650 PF03473 MOSC domain ACEE_04650 PF03476 MOSC N-terminal beta barrel domain ACEE_04655 PF02609 Exonuclease VII small subunit ACEE_04660 PF00348 Polyprenyl synthetase ACEE_04670 PF01336 OB-fold nucleic acid binding domain ACEE_04670 PF00152 tRNA synthetases class II (D, K and N) ACEE_04675 PF10150 Ribonuclease E/G family ACEE_04675 PF00575 S1 RNA binding domain ACEE_04680 PF18381 YcaO cyclodehydratase C-terminal domain ACEE_04680 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding ACEE_04685 PF08003 Protein of unknown function (DUF1698) ACEE_04695 PF06725 3D domain ACEE_04695 PF03562 MltA specific insert domain ACEE_04705 PF02601 Exonuclease VII, large subunit ACEE_04705 PF13742 OB-fold nucleic acid binding domain ACEE_04720 PF00772 DnaB-like helicase N terminal domain ACEE_04720 PF03796 DnaB-like helicase C terminal domain ACEE_04755 PF00436 Single-strand binding protein family ACEE_04770 PF01751 Toprim domain ACEE_04770 PF01131 DNA topoisomerase ACEE_04955 PF00239 Resolvase, N terminal domain ACEE_04955 PF02796 Helix-turn-helix domain of resolvase ACEE_04965 PF02899 Phage integrase, N-terminal SAM-like domain ACEE_04965 PF00589 Phage integrase family ACEE_04975 PF05662 Coiled stalk of trimeric autotransporter adhesin ACEE_04975 PF05658 Head domain of trimeric autotransporter adhesin ACEE_04975 PF03895 YadA-like membrane anchor domain ACEE_04975 PF13018 Extended Signal Peptide of Type V secretion system ACEE_04985 PF00005 ABC transporter ACEE_04985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACEE_04990 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_04990 PF12911 N-terminal TM domain of oligopeptide transport permease C ACEE_04995 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_05000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_05005 PF18024 Helix-turn-helix domain ACEE_05005 PF00158 Sigma-54 interaction domain ACEE_05010 PF13580 SIS domain ACEE_05015 PF13407 Periplasmic binding protein domain ACEE_05020 PF03553 Na+/H+ antiporter family ACEE_05025 PF00816 H-NS histone family ACEE_05030 PF02652 L-lactate permease ACEE_05035 PF02754 Cysteine-rich domain ACEE_05040 PF13183 4Fe-4S dicluster domain ACEE_05040 PF02589 LUD domain ACEE_05040 PF11870 Domain of unknown function (DUF3390) ACEE_05045 PF02589 LUD domain ACEE_05050 PF02698 DUF218 domain ACEE_05055 PF00561 alpha/beta hydrolase fold ACEE_05065 PF00356 Bacterial regulatory proteins, lacI family ACEE_05065 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ACEE_05070 PF09335 SNARE associated Golgi protein ACEE_05075 PF18053 DNA gyrase B subunit insert domain ACEE_05075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ACEE_05075 PF01751 Toprim domain ACEE_05075 PF00204 DNA gyrase B ACEE_05075 PF00986 DNA gyrase B subunit, carboxyl terminus ACEE_05080 PF01040 UbiA prenyltransferase family ACEE_05085 PF00455 DeoR C terminal sensor domain ACEE_05085 PF08220 DeoR-like helix-turn-helix domain ACEE_05090 PF00206 Lyase ACEE_05090 PF08328 Adenylosuccinate lyase C-terminal ACEE_05095 PF04356 Protein of unknown function (DUF489) ACEE_05105 PF00005 ABC transporter ACEE_05105 PF00664 ABC transporter transmembrane region ACEE_05110 PF00005 ABC transporter ACEE_05110 PF00664 ABC transporter transmembrane region ACEE_05115 PF04357 TamB, inner membrane protein subunit of TAM complex ACEE_05120 PF01103 Surface antigen ACEE_05120 PF17243 POTRA domain TamA domain 1 ACEE_05125 PF04748 Divergent polysaccharide deacetylase ACEE_05130 PF01551 Peptidase family M23 ACEE_05135 PF00300 Histidine phosphatase superfamily (branch 1) ACEE_05140 PF01810 LysE type translocator ACEE_05145 PF00485 Phosphoribulokinase / Uridine kinase family ACEE_05150 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) ACEE_05155 PF02233 NAD(P) transhydrogenase beta subunit ACEE_05160 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ACEE_05160 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ACEE_05160 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ACEE_05165 PF00588 SpoU rRNA Methylase family ACEE_05170 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ACEE_05170 PF14489 QueF-like protein ACEE_05180 PF00578 AhpC/TSA family ACEE_05185 PF04055 Radical SAM superfamily ACEE_05185 PF06969 HemN C-terminal domain ACEE_05190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_05195 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_05200 PF00005 ABC transporter ACEE_05200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACEE_05205 PF00005 ABC transporter ACEE_05205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACEE_05210 PF00890 FAD binding domain ACEE_05215 PF01717 Cobalamin-independent synthase, Catalytic domain ACEE_05220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_05225 PF03222 Tryptophan/tyrosine permease family ACEE_05230 PF03315 Serine dehydratase beta chain ACEE_05230 PF03313 Serine dehydratase alpha chain ACEE_05235 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ACEE_05235 PF01266 FAD dependent oxidoreductase ACEE_05245 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ACEE_05245 PF00218 Indole-3-glycerol phosphate synthase ACEE_05250 PF04287 tRNA pseudouridine synthase C ACEE_05255 PF00849 RNA pseudouridylate synthase ACEE_05270 PF01928 CYTH domain ACEE_05275 PF04317 YcjX-like family, DUF463 ACEE_05280 PF01668 SmpB protein ACEE_05285 PF02403 Seryl-tRNA synthetase N-terminal domain ACEE_05285 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACEE_05290 PF03606 C4-dicarboxylate anaerobic carrier ACEE_05295 PF03575 Peptidase family S51 ACEE_05305 PF08264 Anticodon-binding domain of tRNA ACEE_05305 PF13603 Leucyl-tRNA synthetase, Domain 2 ACEE_05305 PF00133 tRNA synthetases class I (I, L, M and V) ACEE_05310 PF04390 Lipopolysaccharide-assembly ACEE_05315 PF14840 Processivity clamp loader gamma complex DNA pol III C-term ACEE_05315 PF06144 DNA polymerase III, delta subunit ACEE_05320 PF03884 DNA gyrase inhibitor YacG ACEE_05325 PF01121 Dephospho-CoA kinase ACEE_05335 PF00482 Type II secretion system (T2SS), protein F ACEE_05340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ACEE_05340 PF00437 Type II/IV secretion system protein ACEE_05345 PF07963 Prokaryotic N-terminal methylation motif ACEE_05350 PF18073 Rubredoxin metal binding domain ACEE_05355 PF12404 Peptidase ACEE_05355 PF00883 Cytosol aminopeptidase family, catalytic domain ACEE_05360 PF01380 SIS domain ACEE_05360 PF00571 CBS domain ACEE_05365 PF03449 Transcription elongation factor, N-terminal ACEE_05365 PF01272 Transcription elongation factor, GreA/GreB, C-term ACEE_05370 PF00885 6,7-dimethyl-8-ribityllumazine synthase ACEE_05375 PF00925 GTP cyclohydrolase II ACEE_05375 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ACEE_05380 PF00677 Lumazine binding domain ACEE_05385 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACEE_05385 PF01872 RibD C-terminal domain ACEE_05395 PF02754 Cysteine-rich domain ACEE_05395 PF13183 4Fe-4S dicluster domain ACEE_05400 PF00890 FAD binding domain ACEE_05405 PF01266 FAD dependent oxidoreductase ACEE_05405 PF04324 BFD-like [2Fe-2S] binding domain ACEE_05410 PF03009 Glycerophosphoryl diester phosphodiesterase family ACEE_05415 PF07690 Major Facilitator Superfamily ACEE_05425 PF00004 ATPase family associated with various cellular activities (AAA) ACEE_05425 PF05362 Lon protease (S16) C-terminal proteolytic domain ACEE_05425 PF02190 ATP-dependent protease La (LON) substrate-binding domain ACEE_05430 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ACEE_05430 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ACEE_05430 PF13288 DXP reductoisomerase C-terminal domain ACEE_05435 PF13291 ACT domain ACEE_05435 PF04607 Region found in RelA / SpoT proteins ACEE_05435 PF02824 TGS domain ACEE_05440 PF01488 Shikimate / quinate 5-dehydrogenase ACEE_05440 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ACEE_05440 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ACEE_05445 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ACEE_05445 PF01926 50S ribosome-binding GTPase ACEE_05450 PF00294 pfkB family carbohydrate kinase ACEE_05450 PF01467 Cytidylyltransferase-like ACEE_05455 PF00156 Phosphoribosyl transferase domain ACEE_05460 PF00639 PPIC-type PPIASE domain ACEE_05460 PF09312 SurA N-terminal domain ACEE_05465 PF00398 Ribosomal RNA adenine dimethylase ACEE_05475 PF13193 AMP-binding enzyme C-terminal domain ACEE_05475 PF00501 AMP-binding enzyme ACEE_05485 PF03872 Anti sigma-E protein RseA, N-terminal domain ACEE_05485 PF03873 Anti sigma-E protein RseA, C-terminal domain ACEE_05490 PF04542 Sigma-70 region 2 ACEE_05490 PF08281 Sigma-70, region 4 ACEE_05500 PF00682 HMGL-like ACEE_05500 PF08502 LeuA allosteric (dimerisation) domain ACEE_05510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACEE_05515 PF01758 Sodium Bile acid symporter family ACEE_05520 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) ACEE_05530 PF00186 Dihydrofolate reductase ACEE_05535 PF00696 Amino acid kinase family ACEE_05535 PF01472 PUA domain ACEE_05540 PF01925 Sulfite exporter TauE/SafE ACEE_05545 PF10576 Iron-sulfur binding domain of endonuclease III ACEE_05545 PF00633 Helix-hairpin-helix motif ACEE_05545 PF00730 HhH-GPD superfamily base excision DNA repair protein ACEE_05550 PF00108 Thiolase, N-terminal domain ACEE_05550 PF02803 Thiolase, C-terminal domain ACEE_05555 PF00378 Enoyl-CoA hydratase/isomerase ACEE_05555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ACEE_05555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ACEE_05560 PF06097 Bacterial protein of unknown function (DUF945) ACEE_05570 PF02634 FdhD/NarQ family ACEE_05575 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACEE_05575 PF00384 Molybdopterin oxidoreductase ACEE_05575 PF01568 Molydopterin dinucleotide binding domain ACEE_05580 PF01568 Molydopterin dinucleotide binding domain ACEE_05580 PF00384 Molybdopterin oxidoreductase ACEE_05580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACEE_05585 PF13247 4Fe-4S dicluster domain ACEE_05585 PF09163 Formate dehydrogenase N, transmembrane ACEE_05590 PF01292 Prokaryotic cytochrome b561 ACEE_05595 PF04216 Protein involved in formate dehydrogenase formation ACEE_05600 PF00311 Phosphoenolpyruvate carboxylase ACEE_05605 PF06835 Lipopolysaccharide-assembly, LptC-related ACEE_05610 PF03968 OstA-like protein ACEE_05615 PF12399 Branched-chain amino acid ATP-binding cassette transporter ACEE_05615 PF00005 ABC transporter ACEE_05620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACEE_05625 PF03668 P-loop ATPase protein family ACEE_05630 PF01494 FAD binding domain ACEE_05650 PF01494 FAD binding domain ACEE_05655 PF00293 NUDIX domain ACEE_05660 PF02769 AIR synthase related protein, C-terminal domain ACEE_05660 PF00586 AIR synthase related protein, N-terminal domain ACEE_05665 PF00472 RF-1 domain ACEE_05665 PF03462 PCRF domain ACEE_05675 PF01717 Cobalamin-independent synthase, Catalytic domain ACEE_05680 PF00156 Phosphoribosyl transferase domain ACEE_05685 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ACEE_05690 PF01510 N-acetylmuramoyl-L-alanine amidase ACEE_05695 PF00849 RNA pseudouridylate synthase ACEE_05700 PF00176 SNF2 family N-terminal domain ACEE_05700 PF12137 RNA polymerase recycling family C-terminal ACEE_05700 PF18337 RapA N-terminal Tudor like domain ACEE_05700 PF18339 RapA N-terminal Tudor like domain 1 ACEE_05700 PF00271 Helicase conserved C-terminal domain ACEE_05710 PF01966 HD domain ACEE_05710 PF13286 Phosphohydrolase-associated domain ACEE_05715 PF01938 TRAM domain ACEE_05715 PF05958 tRNA (Uracil-5-)-methyltransferase ACEE_05725 PF00899 ThiF family ACEE_05730 PF03454 MoeA C-terminal region (domain IV) ACEE_05730 PF03453 MoeA N-terminal region (domain I and II) ACEE_05730 PF00994 Probable molybdopterin binding domain ACEE_05735 PF01914 MarC family integral membrane protein ACEE_05745 PF05128 Domain of unknown function (DUF697) ACEE_05750 PF01207 Dihydrouridine synthase (Dus) ACEE_05760 PF05099 Tellurite resistance protein TerB ACEE_05760 PF00226 DnaJ domain ACEE_05765 PF00691 OmpA family ACEE_05770 PF07676 WD40-like Beta Propeller Repeat ACEE_05770 PF04052 TolB amino-terminal domain ACEE_05775 PF06519 TolA C-terminal ACEE_05780 PF02472 Biopolymer transport protein ExbD/TolR ACEE_05785 PF01618 MotA/TolQ/ExbB proton channel family ACEE_05790 PF03061 Thioesterase superfamily ACEE_05805 PF02322 Cytochrome bd terminal oxidase subunit II ACEE_05810 PF01654 Cytochrome bd terminal oxidase subunit I ACEE_05815 PF17274 Family of unknown function (DUF5339) ACEE_05820 PF00118 TCP-1/cpn60 chaperonin family ACEE_05825 PF00166 Chaperonin 10 Kd subunit ACEE_05830 PF00293 NUDIX domain ACEE_05845 PF02810 SEC-C motif ACEE_05845 PF07516 SecA Wing and Scaffold domain ACEE_05845 PF01043 SecA preprotein cross-linking domain ACEE_05845 PF07517 SecA DEAD-like domain ACEE_05870 PF01722 BolA-like protein ACEE_05880 PF00356 Bacterial regulatory proteins, lacI family ACEE_05880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ACEE_05885 PF01306 LacY proton/sugar symporter ACEE_05890 PF16875 Glycosyl hydrolase family 36 N-terminal domain ACEE_05890 PF16874 Glycosyl hydrolase family 36 C-terminal domain ACEE_05895 PF00005 ABC transporter ACEE_05895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACEE_05900 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_05900 PF12911 N-terminal TM domain of oligopeptide transport permease C ACEE_05905 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_05910 PF17864 RuvB AAA lid domain ACEE_05910 PF05496 Holliday junction DNA helicase RuvB P-loop domain ACEE_05910 PF05491 RuvB C-terminal winged helix domain ACEE_05915 PF07499 RuvA, C-terminal domain ACEE_05915 PF01330 RuvA N terminal domain ACEE_05920 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_05925 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_05930 PF00005 ABC transporter ACEE_05930 PF08402 TOBE domain ACEE_05935 PF00580 UvrD/REP helicase N-terminal domain ACEE_05935 PF13361 UvrD-like helicase C-terminal domain ACEE_05940 PF01026 TatD related DNase ACEE_05945 PF02773 S-adenosylmethionine synthetase, C-terminal domain ACEE_05945 PF02772 S-adenosylmethionine synthetase, central domain ACEE_05945 PF00438 S-adenosylmethionine synthetase, N-terminal domain ACEE_05955 PF13520 Amino acid permease ACEE_05960 PF13520 Amino acid permease ACEE_05970 PF07687 Peptidase dimerisation domain ACEE_05970 PF01546 Peptidase family M20/M25/M40 ACEE_05975 PF03922 OmpW family ACEE_05980 PF02861 Clp amino terminal domain, pathogenicity island component ACEE_05980 PF17871 AAA lid domain ACEE_05980 PF07724 AAA domain (Cdc48 subfamily) ACEE_05980 PF10431 C-terminal, D2-small domain, of ClpB protein ACEE_05980 PF00004 ATPase family associated with various cellular activities (AAA) ACEE_05985 PF10415 Fumarase C C-terminus ACEE_05985 PF00206 Lyase ACEE_05995 PF02769 AIR synthase related protein, C-terminal domain ACEE_05995 PF00586 AIR synthase related protein, N-terminal domain ACEE_06000 PF07501 G5 domain ACEE_06000 PF00746 LPXTG cell wall anchor motif ACEE_06000 PF00728 Glycosyl hydrolase family 20, catalytic domain ACEE_06000 PF04650 YSIRK type signal peptide ACEE_06005 PF06508 Queuosine biosynthesis protein QueC ACEE_06010 PF01242 6-pyruvoyl tetrahydropterin synthase ACEE_06015 PF04055 Radical SAM superfamily ACEE_06020 PF07690 Major Facilitator Superfamily ACEE_06025 PF02789 Cytosol aminopeptidase family, N-terminal domain ACEE_06025 PF00883 Cytosol aminopeptidase family, catalytic domain ACEE_06035 PF03739 Lipopolysaccharide export system permease LptF/LptG ACEE_06040 PF03739 Lipopolysaccharide export system permease LptF/LptG ACEE_06045 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ACEE_06045 PF14579 Helix-hairpin-helix motif ACEE_06045 PF02811 PHP domain ACEE_06045 PF01336 OB-fold nucleic acid binding domain ACEE_06045 PF07733 Bacterial DNA polymerase III alpha NTPase domain ACEE_06050 PF00664 ABC transporter transmembrane region ACEE_06050 PF00005 ABC transporter ACEE_06050 PF03412 Peptidase C39 family ACEE_06055 PF00529 HlyD membrane-fusion protein of T1SS ACEE_06055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ACEE_06065 PF01370 NAD dependent epimerase/dehydratase family ACEE_06065 PF02222 ATP-grasp domain ACEE_06070 PF01553 Acyltransferase ACEE_06075 PF01726 LexA DNA binding domain ACEE_06075 PF00717 Peptidase S24-like ACEE_06080 PF02976 DNA mismatch repair enzyme MutH ACEE_06085 PF03741 Integral membrane protein TerC family ACEE_06090 PF00933 Glycosyl hydrolase family 3 N terminal domain ACEE_06095 PF05958 tRNA (Uracil-5-)-methyltransferase ACEE_06100 PF03952 Enolase, N-terminal domain ACEE_06100 PF00113 Enolase, C-terminal TIM barrel domain ACEE_06105 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) ACEE_06115 PF00271 Helicase conserved C-terminal domain ACEE_06115 PF00570 HRDC domain ACEE_06115 PF16124 RecQ zinc-binding ACEE_06115 PF00270 DEAD/DEAH box helicase ACEE_06115 PF09382 RQC domain ACEE_06120 PF01491 Frataxin-like domain ACEE_06130 PF00814 Glycoprotease family ACEE_06135 PF13525 Outer membrane lipoprotein ACEE_06140 PF00849 RNA pseudouridylate synthase ACEE_06140 PF01479 S4 domain ACEE_06145 PF14256 YwiC-like protein ACEE_06150 PF00365 Phosphofructokinase ACEE_06155 PF00266 Aminotransferase class-V ACEE_06160 PF00565 Staphylococcal nuclease homologue ACEE_06165 PF01235 Sodium:alanine symporter family ACEE_06170 PF01594 AI-2E family transporter ACEE_06185 PF04932 O-Antigen ligase ACEE_06190 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ACEE_06190 PF00534 Glycosyl transferases group 1 ACEE_06195 PF01467 Cytidylyltransferase-like ACEE_06200 PF00929 Exonuclease ACEE_06210 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ACEE_06215 PF01520 N-acetylmuramoyl-L-alanine amidase ACEE_06215 PF01476 LysM domain ACEE_06220 PF02954 Bacterial regulatory protein, Fis family ACEE_06225 PF01207 Dihydrouridine synthase (Dus) ACEE_06230 PF00300 Histidine phosphatase superfamily (branch 1) ACEE_06235 PF00224 Pyruvate kinase, barrel domain ACEE_06235 PF02887 Pyruvate kinase, alpha/beta domain ACEE_06240 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACEE_06245 PF00793 DAHP synthetase I family ACEE_06250 PF01817 Chorismate mutase type II ACEE_06250 PF02153 Prephenate dehydrogenase ACEE_06255 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ACEE_06255 PF02779 Transketolase, pyrimidine binding domain ACEE_06255 PF02780 Transketolase, C-terminal domain ACEE_06260 PF00459 Inositol monophosphatase family ACEE_06265 PF00588 SpoU rRNA Methylase family ACEE_06265 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACEE_06270 PF01810 LysE type translocator ACEE_06275 PF04608 Phosphatidylglycerophosphatase A ACEE_06280 PF00586 AIR synthase related protein, N-terminal domain ACEE_06280 PF02769 AIR synthase related protein, C-terminal domain ACEE_06285 PF01029 NusB family ACEE_06290 PF03958 Bacterial type II/III secretion system short domain ACEE_06290 PF00263 Bacterial type II and III secretion system protein ACEE_06310 PF11104 Type IV pilus assembly protein PilM; ACEE_06315 PF00905 Penicillin binding protein transpeptidase domain ACEE_06315 PF00912 Transglycosylase ACEE_06315 PF17092 Penicillin-binding protein OB-like domain ACEE_06320 PF01202 Shikimate kinase ACEE_06325 PF01761 3-dehydroquinate synthase ACEE_06330 PF02086 D12 class N6 adenine-specific DNA methyltransferase ACEE_06335 PF00209 Sodium:neurotransmitter symporter family ACEE_06340 PF00342 Phosphoglucose isomerase ACEE_06345 PF04380 Membrane fusogenic activity ACEE_06370 PF01488 Shikimate / quinate 5-dehydrogenase ACEE_06370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ACEE_06370 PF08501 Shikimate dehydrogenase substrate binding domain ACEE_06375 PF01300 Telomere recombination ACEE_06380 PF01396 Topoisomerase DNA binding C4 zinc finger ACEE_06390 PF02631 RecX family ACEE_06395 PF00154 recA bacterial DNA recombination protein ACEE_06400 PF01063 Amino-transferase class IV ACEE_06405 PF00425 chorismate binding enzyme ACEE_06410 PF02646 RmuC family ACEE_06415 PF00117 Glutamine amidotransferase class-I ACEE_06425 PF03279 Bacterial lipid A biosynthesis acyltransferase ACEE_06430 PF02508 Rnf-Nqr subunit, membrane protein ACEE_06435 PF04205 FMN-binding domain ACEE_06440 PF03116 NQR2, RnfD, RnfE family ACEE_06445 PF03458 UPF0126 domain ACEE_06450 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ACEE_06450 PF12838 4Fe-4S dicluster domain ACEE_06450 PF13375 RnfC Barrel sandwich hybrid domain ACEE_06455 PF04060 Putative Fe-S cluster ACEE_06460 PF02508 Rnf-Nqr subunit, membrane protein ACEE_06470 PF00664 ABC transporter transmembrane region ACEE_06470 PF00005 ABC transporter ACEE_06470 PF03412 Peptidase C39 family ACEE_06490 PF03466 LysR substrate binding domain ACEE_06490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_06500 PF13460 NAD(P)H-binding ACEE_06505 PF13419 Haloacid dehalogenase-like hydrolase ACEE_06510 PF04381 Putative exonuclease, RdgC ACEE_06515 PF14748 Pyrroline-5-carboxylate reductase dimerisation ACEE_06515 PF03807 NADP oxidoreductase coenzyme F420-dependent ACEE_06520 PF12832 MFS_1 like family ACEE_06525 PF08218 Citrate lyase ligase C-terminal domain ACEE_06535 PF04400 (Na+)-NQR maturation NqrM ACEE_06540 PF02424 ApbE family ACEE_06545 PF00111 2Fe-2S iron-sulfur cluster binding domain ACEE_06545 PF00175 Oxidoreductase NAD-binding domain ACEE_06545 PF00970 Oxidoreductase FAD-binding domain ACEE_06550 PF02508 Rnf-Nqr subunit, membrane protein ACEE_06555 PF02508 Rnf-Nqr subunit, membrane protein ACEE_06560 PF04205 FMN-binding domain ACEE_06565 PF03116 NQR2, RnfD, RnfE family ACEE_06570 PF11973 NQRA C-terminal domain ACEE_06570 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ACEE_06575 PF01106 NifU-like domain ACEE_06575 PF01521 Iron-sulphur cluster biosynthesis ACEE_06580 PF00962 Adenosine/AMP deaminase ACEE_06585 PF00317 Ribonucleotide reductase, all-alpha domain ACEE_06585 PF02867 Ribonucleotide reductase, barrel domain ACEE_06585 PF03477 ATP cone domain ACEE_06600 PF01207 Dihydrouridine synthase (Dus) ACEE_06605 PF03641 Possible lysine decarboxylase ACEE_06605 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ACEE_06605 PF11892 Domain of unknown function (DUF3412) ACEE_06610 PF11398 Protein of unknown function (DUF2813) ACEE_06615 PF00708 Acylphosphatase ACEE_06620 PF02595 Glycerate kinase family ACEE_06625 PF02447 GntP family permease ACEE_06630 PF05651 Putative sugar diacid recognition ACEE_06630 PF17853 GGDEF-like domain ACEE_06630 PF13556 PucR C-terminal helix-turn-helix domain ACEE_06635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_06640 PF00330 Aconitase family (aconitate hydratase) ACEE_06645 PF00694 Aconitase C-terminal domain ACEE_06655 PF10063 Uncharacterized integral membrane protein (DUF2301) ACEE_06660 PF06418 CTP synthase N-terminus ACEE_06660 PF00117 Glutamine amidotransferase class-I ACEE_06665 PF17763 Glutaminase/Asparaginase C-terminal domain ACEE_06665 PF00710 Asparaginase, N-terminal ACEE_06675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_06675 PF03466 LysR substrate binding domain ACEE_06680 PF13419 Haloacid dehalogenase-like hydrolase ACEE_06685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_06685 PF03466 LysR substrate binding domain ACEE_06690 PF03193 RsgA GTPase ACEE_06695 PF01351 Ribonuclease HII ACEE_06700 PF00950 ABC 3 transport family ACEE_06705 PF00950 ABC 3 transport family ACEE_06710 PF01230 HIT domain ACEE_06725 PF00753 Metallo-beta-lactamase superfamily ACEE_06730 PF05951 Bacterial protein of unknown function (DUF882) ACEE_06735 PF03734 L,D-transpeptidase catalytic domain ACEE_06740 PF11818 C-terminal domain of tail specific protease (DUF3340) ACEE_06740 PF17804 Tail specific protease N-terminal domain ACEE_06740 PF03572 Peptidase family S41 ACEE_06740 PF00595 PDZ domain ACEE_06745 PF04352 ProQ/FINO family ACEE_06750 PF00313 'Cold-shock' DNA-binding domain ACEE_06755 PF04055 Radical SAM superfamily ACEE_06755 PF06968 Biotin and Thiamin Synthesis associated domain ACEE_06765 PF00303 Thymidylate synthase ACEE_06770 PF00216 Bacterial DNA-binding protein ACEE_06775 PF04222 Protein of unknown function (DUF416) ACEE_06780 PF01208 Uroporphyrinogen decarboxylase (URO-D) ACEE_06785 PF03695 Uncharacterised protein family (UPF0149) ACEE_06790 PF05164 Cell division protein ZapA ACEE_06795 PF01812 5-formyltetrahydrofolate cyclo-ligase family ACEE_06800 PF01614 Bacterial transcriptional regulator ACEE_06800 PF09339 IclR helix-turn-helix domain ACEE_06805 PF00474 Sodium:solute symporter family ACEE_06810 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ACEE_06810 PF14850 DNA-binding domain of Proline dehydrogenase ACEE_06810 PF00171 Aldehyde dehydrogenase family ACEE_06810 PF01619 Proline dehydrogenase ACEE_06815 PF00860 Permease family ACEE_06860 PF04829 Pre-toxin domain with VENN motif ACEE_06905 PF13018 Extended Signal Peptide of Type V secretion system ACEE_06905 PF05860 haemagglutination activity domain ACEE_06905 PF04829 Pre-toxin domain with VENN motif ACEE_06905 PF13332 Hemagglutinin repeat ACEE_06910 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB ACEE_06910 PF17287 POTRA domain ACEE_06910 PF08479 POTRA domain, ShlB-type ACEE_06915 PF05658 Head domain of trimeric autotransporter adhesin ACEE_06915 PF03895 YadA-like membrane anchor domain ACEE_06915 PF05662 Coiled stalk of trimeric autotransporter adhesin ACEE_06920 PF03916 Polysulphide reductase, NrfD ACEE_06925 PF13247 4Fe-4S dicluster domain ACEE_06935 PF02335 Cytochrome c552 ACEE_06940 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACEE_06940 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACEE_06945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACEE_06945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACEE_06945 PF00205 Thiamine pyrophosphate enzyme, central domain ACEE_06955 PF00719 Inorganic pyrophosphatase ACEE_06960 PF00920 Dehydratase family ACEE_06965 PF02535 ZIP Zinc transporter ACEE_06975 PF01926 50S ribosome-binding GTPase ACEE_06980 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) ACEE_06985 PF06877 Regulator of ribonuclease activity B ACEE_06990 PF01206 Sulfurtransferase TusA ACEE_06995 PF00557 Metallopeptidase family M24 ACEE_07000 PF04186 FxsA cytoplasmic membrane protein ACEE_07010 PF00849 RNA pseudouridylate synthase ACEE_07015 PF00293 NUDIX domain ACEE_07015 PF09297 NADH pyrophosphatase zinc ribbon domain ACEE_07020 PF06078 Bacterial protein of unknown function (DUF937) ACEE_07025 PF02348 Cytidylyltransferase ACEE_07030 PF07992 Pyridine nucleotide-disulphide oxidoreductase ACEE_07035 PF02733 Dak1 domain ACEE_07040 PF02734 DAK2 domain ACEE_07045 PF05524 PEP-utilising enzyme, N-terminal ACEE_07045 PF00381 PTS HPr component phosphorylation site ACEE_07045 PF00391 PEP-utilising enzyme, mobile domain ACEE_07045 PF03610 PTS system fructose IIA component ACEE_07055 PF00581 Rhodanese-like domain ACEE_07060 PF01618 MotA/TolQ/ExbB proton channel family ACEE_07065 PF02472 Biopolymer transport protein ExbD/TolR ACEE_07070 PF03544 Gram-negative bacterial TonB protein C-terminal ACEE_07075 PF02575 YbaB/EbfC DNA-binding family ACEE_07080 PF13662 Toprim domain ACEE_07080 PF02132 RecR protein ACEE_07085 PF00462 Glutaredoxin ACEE_07090 PF01063 Amino-transferase class IV ACEE_07095 PF01042 Endoribonuclease L-PSP ACEE_07105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACEE_07105 PF00005 ABC transporter ACEE_07110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACEE_07110 PF00005 ABC transporter ACEE_07115 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_07115 PF12911 N-terminal TM domain of oligopeptide transport permease C ACEE_07120 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_07125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_07130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_07155 PF00923 Transaldolase/Fructose-6-phosphate aldolase ACEE_07160 PF00588 SpoU rRNA Methylase family ACEE_07165 PF10672 S-adenosylmethionine-dependent methyltransferase ACEE_07165 PF02926 THUMP domain ACEE_07165 PF01170 Putative RNA methylase family UPF0020 ACEE_07170 PF00072 Response regulator receiver domain ACEE_07170 PF00196 Bacterial regulatory proteins, luxR family ACEE_07175 PF00128 Alpha amylase, catalytic domain ACEE_07175 PF11941 Domain of unknown function (DUF3459) ACEE_07180 PF02378 Phosphotransferase system, EIIC ACEE_07180 PF00367 phosphotransferase system, EIIB ACEE_07185 PF00037 4Fe-4S binding domain ACEE_07190 PF01571 Aminomethyltransferase folate-binding domain ACEE_07195 PF08340 Domain of unknown function (DUF1732) ACEE_07195 PF03755 YicC-like family, N-terminal region ACEE_07200 PF01138 3' exoribonuclease family, domain 1 ACEE_07200 PF03725 3' exoribonuclease family, domain 2 ACEE_07205 PF00462 Glutaredoxin ACEE_07220 PF01168 Alanine racemase, N-terminal domain ACEE_07235 PF00486 Transcriptional regulatory protein, C terminal ACEE_07235 PF00072 Response regulator receiver domain ACEE_07240 PF00149 Calcineurin-like phosphoesterase ACEE_07245 PF01467 Cytidylyltransferase-like ACEE_07245 PF13521 AAA domain ACEE_07250 PF06574 FAD synthetase ACEE_07250 PF01687 Riboflavin kinase ACEE_07255 PF06827 Zinc finger found in FPG and IleRS ACEE_07255 PF08264 Anticodon-binding domain of tRNA ACEE_07255 PF00133 tRNA synthetases class I (I, L, M and V) ACEE_07260 PF13091 PLD-like domain ACEE_07265 PF08032 RNA 2'-O ribose methyltransferase substrate binding ACEE_07265 PF00588 SpoU rRNA Methylase family ACEE_07270 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) ACEE_07275 PF01926 50S ribosome-binding GTPase ACEE_07275 PF01018 GTP1/OBG ACEE_07280 PF00750 tRNA synthetases class I (R) ACEE_07280 PF05746 DALR anticodon binding domain ACEE_07280 PF03485 Arginyl tRNA synthetase N terminal domain ACEE_07285 PF06185 YecM protein ACEE_07290 PF05433 Glycine zipper 2TM domain ACEE_07300 PF04191 Phospholipid methyltransferase ACEE_07305 PF01926 50S ribosome-binding GTPase ACEE_07305 PF06071 Protein of unknown function (DUF933) ACEE_07310 PF01195 Peptidyl-tRNA hydrolase ACEE_07325 PF16658 Class II release factor RF3, C-terminal domain ACEE_07325 PF00009 Elongation factor Tu GTP binding domain ACEE_07325 PF03144 Elongation factor Tu domain 2 ACEE_07330 PF05662 Coiled stalk of trimeric autotransporter adhesin ACEE_07330 PF05658 Head domain of trimeric autotransporter adhesin ACEE_07330 PF03895 YadA-like membrane anchor domain ACEE_07330 PF13018 Extended Signal Peptide of Type V secretion system ACEE_07335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_07340 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_07345 PF12911 N-terminal TM domain of oligopeptide transport permease C ACEE_07345 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_07350 PF00005 ABC transporter ACEE_07350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ACEE_07355 PF02463 RecF/RecN/SMC N terminal domain ACEE_07360 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ACEE_07365 PF12327 FtsZ family, C-terminal domain ACEE_07365 PF00091 Tubulin/FtsZ family, GTPase domain ACEE_07370 PF02491 SHS2 domain inserted in FTSA ACEE_07375 PF03799 Cell division protein FtsQ ACEE_07375 PF08478 POTRA domain, FtsQ-type ACEE_07380 PF01820 D-ala D-ala ligase N-terminus ACEE_07380 PF07478 D-ala D-ala ligase C-terminus ACEE_07385 PF01225 Mur ligase family, catalytic domain ACEE_07385 PF08245 Mur ligase middle domain ACEE_07385 PF02875 Mur ligase family, glutamate ligase domain ACEE_07390 PF03033 Glycosyltransferase family 28 N-terminal domain ACEE_07390 PF04101 Glycosyltransferase family 28 C-terminal domain ACEE_07395 PF01098 Cell cycle protein ACEE_07400 PF02875 Mur ligase family, glutamate ligase domain ACEE_07400 PF08245 Mur ligase middle domain ACEE_07405 PF00953 Glycosyl transferase family 4 ACEE_07405 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ACEE_07410 PF08245 Mur ligase middle domain ACEE_07410 PF01225 Mur ligase family, catalytic domain ACEE_07410 PF02875 Mur ligase family, glutamate ligase domain ACEE_07415 PF02875 Mur ligase family, glutamate ligase domain ACEE_07415 PF01225 Mur ligase family, catalytic domain ACEE_07415 PF08245 Mur ligase middle domain ACEE_07420 PF00905 Penicillin binding protein transpeptidase domain ACEE_07420 PF03717 Penicillin-binding Protein dimerisation domain ACEE_07425 PF04999 Cell division protein FtsL ACEE_07430 PF01795 MraW methylase family ACEE_07435 PF02381 MraZ protein, putative antitoxin-like ACEE_07440 PF03605 Anaerobic c4-dicarboxylate membrane transporter ACEE_07445 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) ACEE_07455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ACEE_07455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ACEE_07460 PF00696 Amino acid kinase family ACEE_07465 PF00367 phosphotransferase system, EIIB ACEE_07465 PF02378 Phosphotransferase system, EIIC ACEE_07470 PF00005 ABC transporter ACEE_07475 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_07480 PF00381 PTS HPr component phosphorylation site ACEE_07485 PF00391 PEP-utilising enzyme, mobile domain ACEE_07485 PF02896 PEP-utilising enzyme, TIM barrel domain ACEE_07485 PF05524 PEP-utilising enzyme, N-terminal ACEE_07490 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 ACEE_07495 PF01938 TRAM domain ACEE_07495 PF04055 Radical SAM superfamily ACEE_07495 PF00919 Uncharacterized protein family UPF0004 ACEE_07500 PF04224 Protein of unknown function, DUF417 ACEE_07505 PF07732 Multicopper oxidase ACEE_07510 PF00294 pfkB family carbohydrate kinase ACEE_07515 PF00251 Glycosyl hydrolases family 32 N-terminal domain ACEE_07515 PF08244 Glycosyl hydrolases family 32 C terminal ACEE_07520 PF00356 Bacterial regulatory proteins, lacI family ACEE_07520 PF13407 Periplasmic binding protein domain ACEE_07560 PF03461 TRCF domain ACEE_07560 PF02559 CarD-like/TRCF domain ACEE_07560 PF00271 Helicase conserved C-terminal domain ACEE_07560 PF17757 UvrB interaction domain ACEE_07560 PF00270 DEAD/DEAH box helicase ACEE_07570 PF11940 Domain of unknown function (DUF3458) Ig-like fold ACEE_07570 PF01433 Peptidase family M1 domain ACEE_07570 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ACEE_07575 PF02660 Glycerol-3-phosphate acyltransferase ACEE_07580 PF02152 Dihydroneopterin aldolase ACEE_07585 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region ACEE_07585 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ACEE_07590 PF00892 EamA-like transporter family ACEE_07595 PF01016 Ribosomal L27 protein ACEE_07600 PF00829 Ribosomal prokaryotic L21 protein ACEE_07605 PF07681 DoxX ACEE_07610 PF03358 NADPH-dependent FMN reductase ACEE_07615 PF00348 Polyprenyl synthetase ACEE_07620 PF02677 Epoxyqueuosine reductase QueH ACEE_07625 PF00698 Acyl transferase domain ACEE_07635 PF05525 Branched-chain amino acid transport protein ACEE_07640 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ACEE_07640 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ACEE_07640 PF06827 Zinc finger found in FPG and IleRS ACEE_07650 PF00490 Delta-aminolevulinic acid dehydratase ACEE_07655 PF00902 Sec-independent protein translocase protein (TatC) ACEE_07665 PF02416 mttA/Hcf106 family ACEE_07670 PF03109 ABC1 family ACEE_07680 PF01209 ubiE/COQ5 methyltransferase family ACEE_07685 PF01544 CorA-like Mg2+ transporter protein ACEE_07700 PF05958 tRNA (Uracil-5-)-methyltransferase ACEE_07705 PF04219 Protein of unknown function, DUF ACEE_07710 PF00282 Pyridoxal-dependent decarboxylase conserved domain ACEE_07715 PF00202 Aminotransferase class-III ACEE_07720 PF00471 Ribosomal protein L33 ACEE_07725 PF00830 Ribosomal L28 family ACEE_07730 PF04002 RadC-like JAB domain ACEE_07735 PF04127 DNA / pantothenate metabolism flavoprotein ACEE_07735 PF02441 Flavoprotein ACEE_07740 PF00692 dUTPase ACEE_07745 PF00440 Bacterial regulatory proteins, tetR family ACEE_07750 PF06794 Uncharacterised protein family (UPF0270) ACEE_07755 PF13545 Crp-like helix-turn-helix domain ACEE_07755 PF00027 Cyclic nucleotide-binding domain ACEE_07760 PF03819 MazG nucleotide pyrophosphohydrolase domain ACEE_07765 PF16360 GTP-binding GTPase Middle Region ACEE_07765 PF13167 GTP-binding GTPase N-terminal ACEE_07765 PF01926 50S ribosome-binding GTPase ACEE_07770 PF17209 Hfq protein ACEE_07780 PF01119 DNA mismatch repair protein, C-terminal domain ACEE_07780 PF08676 MutL C terminal dimerisation domain ACEE_07795 PF00593 TonB dependent receptor ACEE_07795 PF07715 TonB-dependent Receptor Plug Domain ACEE_07800 PF00171 Aldehyde dehydrogenase family ACEE_07805 PF03631 Virulence factor BrkB ACEE_07810 PF02580 D-Tyr-tRNA(Tyr) deacylase ACEE_07820 PF06965 Na+/H+ antiporter 1 ACEE_07825 PF00892 EamA-like transporter family ACEE_07830 PF01648 4'-phosphopantetheinyl transferase superfamily ACEE_07835 PF06146 Phosphate-starvation-inducible E ACEE_07840 PF00293 NUDIX domain ACEE_07845 PF00149 Calcineurin-like phosphoesterase ACEE_07850 PF00120 Glutamine synthetase, catalytic domain ACEE_07850 PF03951 Glutamine synthetase, beta-Grasp domain ACEE_07860 PF00825 Ribonuclease P ACEE_07865 PF00468 Ribosomal protein L34 ACEE_07870 PF00762 Ferrochelatase ACEE_07875 PF07670 Nucleoside recognition ACEE_07880 PF07670 Nucleoside recognition ACEE_07890 PF03352 Methyladenine glycosylase ACEE_07900 PF01551 Peptidase family M23 ACEE_07900 PF01476 LysM domain ACEE_07915 PF09335 SNARE associated Golgi protein ACEE_07920 PF01975 Survival protein SurE ACEE_07925 PF01142 tRNA pseudouridine synthase D (TruD) ACEE_07930 PF00121 Triosephosphate isomerase ACEE_07935 PF03797 Autotransporter beta-domain ACEE_07935 PF00082 Subtilase family ACEE_07945 PF00535 Glycosyl transferase family 2 ACEE_07950 PF14883 Hypothetical glycosyl hydrolase family 13 ACEE_07950 PF01522 Polysaccharide deacetylase ACEE_07960 PF00501 AMP-binding enzyme ACEE_07970 PF01263 Aldose 1-epimerase ACEE_07975 PF04333 MlaA lipoprotein ACEE_07980 PF01340 Met Apo-repressor, MetJ ACEE_07985 PF06196 Protein of unknown function (DUF997) ACEE_07990 PF00474 Sodium:solute symporter family ACEE_07995 PF00009 Elongation factor Tu GTP binding domain ACEE_08000 PF01507 Phosphoadenosine phosphosulfate reductase family ACEE_08005 PF01507 Phosphoadenosine phosphosulfate reductase family ACEE_08010 PF10414 Sirohaem synthase dimerisation region ACEE_08010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACEE_08010 PF14824 Sirohaem biosynthesis protein central ACEE_08020 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_08025 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_08030 PF12857 TOBE-like domain ACEE_08030 PF00005 ABC transporter ACEE_08030 PF17850 CysA C-terminal regulatory domain ACEE_08040 PF03212 Pertactin ACEE_08040 PF03797 Autotransporter beta-domain ACEE_08040 PF16168 Adhesin of bacterial autotransporter system, probable stalk ACEE_08040 PF13018 Extended Signal Peptide of Type V secretion system ACEE_08045 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACEE_08045 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ACEE_08050 PF04403 Paraquat-inducible protein A ACEE_08055 PF01841 Transglutaminase-like superfamily ACEE_08065 PF00403 Heavy-metal-associated domain ACEE_08070 PF00171 Aldehyde dehydrogenase family ACEE_08075 PF12833 Helix-turn-helix domain ACEE_08080 PF02395 Immunoglobulin A1 protease ACEE_08080 PF03797 Autotransporter beta-domain ACEE_08085 PF12706 Beta-lactamase superfamily domain ACEE_08090 PF13173 AAA domain ACEE_08090 PF13635 Domain of unknown function (DUF4143) ACEE_08110 PF03466 LysR substrate binding domain ACEE_08110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_08145 PF12833 Helix-turn-helix domain ACEE_08145 PF01965 DJ-1/PfpI family ACEE_08160 PF01323 DSBA-like thioredoxin domain ACEE_08170 PF00753 Metallo-beta-lactamase superfamily ACEE_08175 PF06779 Uncharacterised MFS-type transporter YbfB ACEE_08195 PF02566 OsmC-like protein ACEE_08200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACEE_08215 PF02566 OsmC-like protein ACEE_08230 PF03328 HpcH/HpaI aldolase/citrate lyase family ACEE_08240 PF06719 AraC-type transcriptional regulator N-terminus ACEE_08240 PF12833 Helix-turn-helix domain ACEE_08245 PF00881 Nitroreductase family ACEE_08270 PF02803 Thiolase, C-terminal domain ACEE_08270 PF00108 Thiolase, N-terminal domain ACEE_08275 PF02667 Short chain fatty acid transporter ACEE_08280 PF01144 Coenzyme A transferase ACEE_08285 PF01144 Coenzyme A transferase ACEE_08290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_08290 PF03466 LysR substrate binding domain ACEE_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_08295 PF03466 LysR substrate binding domain ACEE_08300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ACEE_08305 PF00296 Luciferase-like monooxygenase ACEE_08310 PF14602 Hexapeptide repeat of succinyl-transferase ACEE_08310 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ACEE_08310 PF00132 Bacterial transferase hexapeptide (six repeats) ACEE_08315 PF01220 Dehydroquinase class II ACEE_08320 PF00884 Sulfatase ACEE_08325 PF00364 Biotin-requiring enzyme ACEE_08330 PF00289 Biotin carboxylase, N-terminal domain ACEE_08330 PF02785 Biotin carboxylase C-terminal domain ACEE_08330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACEE_08335 PF03205 Molybdopterin guanine dinucleotide synthesis protein B ACEE_08340 PF06288 Protein of unknown function (DUF1040) ACEE_08345 PF01323 DSBA-like thioredoxin domain ACEE_08355 PF05036 Sporulation related domain ACEE_08355 PF05036 Sporulation related domain ACEE_08360 PF04445 Putative SAM-dependent methyltransferase ACEE_08365 PF02557 D-alanyl-D-alanine carboxypeptidase ACEE_08370 PF01546 Peptidase family M20/M25/M40 ACEE_08370 PF07687 Peptidase dimerisation domain ACEE_08375 PF03960 ArsC family ACEE_08385 PF00809 Pterin binding enzyme ACEE_08400 PF01479 S4 domain ACEE_08400 PF00849 RNA pseudouridylate synthase ACEE_08405 PF00924 Mechanosensitive ion channel ACEE_08405 PF05552 Conserved TM helix ACEE_08410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ACEE_08410 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ACEE_08425 PF01226 Formate/nitrite transporter ACEE_08430 PF03737 Aldolase/RraA ACEE_08435 PF05175 Methyltransferase small domain ACEE_08445 PF00293 NUDIX domain ACEE_08450 PF01925 Sulfite exporter TauE/SafE ACEE_08455 PF01790 Prolipoprotein diacylglyceryl transferase ACEE_08475 PF13419 Haloacid dehalogenase-like hydrolase ACEE_08480 PF00579 tRNA synthetases class I (W and Y) ACEE_08485 PF00082 Subtilase family ACEE_08485 PF03797 Autotransporter beta-domain ACEE_08485 PF12951 Passenger-associated-transport-repeat ACEE_08490 PF06303 MatP N-terminal domain ACEE_08490 PF17414 MatP C-terminal ribbon-helix-helix domain ACEE_08495 PF05362 Lon protease (S16) C-terminal proteolytic domain ACEE_08495 PF13654 AAA domain ACEE_08500 PF07977 FabA-like domain ACEE_08525 PF17946 RecC C-terminal domain ACEE_08530 PF05193 Peptidase M16 inactive domain ACEE_08530 PF16187 Middle or third domain of peptidase_M16 ACEE_08530 PF00675 Insulinase (Peptidase family M16) ACEE_08535 PF00684 DnaJ central domain ACEE_08535 PF00226 DnaJ domain ACEE_08535 PF01556 DnaJ C terminal domain ACEE_08540 PF00012 Hsp70 protein ACEE_08545 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ACEE_08545 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACEE_08555 PF13407 Periplasmic binding protein domain ACEE_08560 PF00005 ABC transporter ACEE_08565 PF02653 Branched-chain amino acid transport system / permease component ACEE_08575 PF04616 Glycosyl hydrolases family 43 ACEE_08575 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain ACEE_08580 PF12833 Helix-turn-helix domain ACEE_08585 PF05649 Peptidase family M13 ACEE_08585 PF01431 Peptidase family M13 ACEE_08590 PF10571 Uncharacterised protein family UPF0547 ACEE_08595 PF00667 FAD binding domain ACEE_08595 PF00175 Oxidoreductase NAD-binding domain ACEE_08595 PF00258 Flavodoxin ACEE_08600 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ACEE_08600 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ACEE_08605 PF01501 Glycosyl transferase family 8 ACEE_08630 PF01177 Asp/Glu/Hydantoin racemase ACEE_08635 PF00194 Eukaryotic-type carbonic anhydrase ACEE_08640 PF04345 Chorismate lyase ACEE_08645 PF01048 Phosphorylase superfamily ACEE_08650 PF13404 AsnC-type helix-turn-helix domain ACEE_08650 PF01037 Lrp/AsnC ligand binding domain ACEE_08655 PF03590 Aspartate-ammonia ligase ACEE_08660 PF01794 Ferric reductase like transmembrane component ACEE_08665 PF00174 Oxidoreductase molybdopterin binding domain ACEE_08670 PF08281 Sigma-70, region 4 ACEE_08670 PF04542 Sigma-70 region 2 ACEE_08680 PF04073 Aminoacyl-tRNA editing domain ACEE_08680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ACEE_08680 PF03129 Anticodon binding domain ACEE_08685 PF00270 DEAD/DEAH box helicase ACEE_08685 PF17191 RecG wedge domain ACEE_08685 PF00271 Helicase conserved C-terminal domain ACEE_08690 PF02896 PEP-utilising enzyme, TIM barrel domain ACEE_08690 PF00391 PEP-utilising enzyme, mobile domain ACEE_08690 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ACEE_08695 PF03618 Kinase/pyrophosphorylase ACEE_08700 PF13018 Extended Signal Peptide of Type V secretion system ACEE_08700 PF05658 Head domain of trimeric autotransporter adhesin ACEE_08700 PF05662 Coiled stalk of trimeric autotransporter adhesin ACEE_08700 PF05658 Head domain of trimeric autotransporter adhesin ACEE_08700 PF05662 Coiled stalk of trimeric autotransporter adhesin ACEE_08700 PF03895 YadA-like membrane anchor domain ACEE_08700 PF13018 Extended Signal Peptide of Type V secretion system ACEE_08700 PF03895 YadA-like membrane anchor domain ACEE_08710 PF01192 RNA polymerase Rpb6 ACEE_08715 PF02824 TGS domain ACEE_08715 PF13291 ACT domain ACEE_08715 PF04607 Region found in RelA / SpoT proteins ACEE_08720 PF00378 Enoyl-CoA hydratase/isomerase ACEE_08725 PF00912 Transglycosylase ACEE_08725 PF00905 Penicillin binding protein transpeptidase domain ACEE_08725 PF14814 Bifunctional transglycosylase second domain ACEE_08730 PF00444 Ribosomal protein L36 ACEE_08735 PF01197 Ribosomal protein L31 ACEE_08740 PF00834 Ribulose-phosphate 3 epimerase family ACEE_08745 PF00550 Phosphopantetheine attachment site ACEE_08765 PF02618 YceG-like family ACEE_08770 PF02223 Thymidylate kinase ACEE_08775 PF09115 DNA polymerase III, delta subunit, C terminal ACEE_08780 PF01026 TatD related DNase ACEE_08785 PF07509 Protein of unknown function (DUF1523) ACEE_08790 PF00149 Calcineurin-like phosphoesterase ACEE_08795 PF00535 Glycosyl transferase family 2 ACEE_08800 PF04304 Protein of unknown function (DUF454) ACEE_08810 PF17347 Family of unknown function (DUF5377) ACEE_08815 PF02092 Glycyl-tRNA synthetase beta subunit ACEE_08815 PF05746 DALR anticodon binding domain ACEE_08835 PF02091 Glycyl-tRNA synthetase alpha subunit ACEE_08845 PF01568 Molydopterin dinucleotide binding domain ACEE_08845 PF18364 Molybdopterin oxidoreductase N-terminal domain ACEE_08845 PF00384 Molybdopterin oxidoreductase ACEE_08850 PF02613 Nitrate reductase delta subunit ACEE_08865 PF00127 Copper binding proteins, plastocyanin/azurin family ACEE_08870 PF00005 ABC transporter ACEE_08875 PF01032 FecCD transport family ACEE_08885 PF08007 Cupin superfamily protein ACEE_08890 PF01245 Ribosomal protein L19 ACEE_08895 PF01746 tRNA (Guanine-1)-methyltransferase ACEE_08900 PF01782 RimM N-terminal domain ACEE_08900 PF05239 PRC-barrel domain ACEE_08905 PF00886 Ribosomal protein S16 ACEE_08910 PF01196 Ribosomal protein L17 ACEE_08915 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ACEE_08915 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ACEE_08915 PF01000 RNA polymerase Rpb3/RpoA insert domain ACEE_08920 PF00163 Ribosomal protein S4/S9 N-terminal domain ACEE_08920 PF01479 S4 domain ACEE_08925 PF00411 Ribosomal protein S11 ACEE_08930 PF00416 Ribosomal protein S13/S18 ACEE_08935 PF00444 Ribosomal protein L36 ACEE_08940 PF00344 SecY translocase ACEE_08945 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ACEE_08950 PF00327 Ribosomal protein L30p/L7e ACEE_08955 PF00333 Ribosomal protein S5, N-terminal domain ACEE_08955 PF03719 Ribosomal protein S5, C-terminal domain ACEE_08960 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ACEE_08965 PF00347 Ribosomal protein L6 ACEE_08970 PF00410 Ribosomal protein S8 ACEE_08975 PF00253 Ribosomal protein S14p/S29e ACEE_08980 PF00281 Ribosomal protein L5 ACEE_08980 PF00673 ribosomal L5P family C-terminus ACEE_08985 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ACEE_08985 PF00467 KOW motif ACEE_08990 PF00238 Ribosomal protein L14p/L23e ACEE_08995 PF00366 Ribosomal protein S17 ACEE_09000 PF00831 Ribosomal L29 protein ACEE_09005 PF00252 Ribosomal protein L16p/L10e ACEE_09010 PF07650 KH domain ACEE_09010 PF00189 Ribosomal protein S3, C-terminal domain ACEE_09015 PF00237 Ribosomal protein L22p/L17e ACEE_09020 PF00203 Ribosomal protein S19 ACEE_09025 PF00181 Ribosomal Proteins L2, RNA binding domain ACEE_09025 PF03947 Ribosomal Proteins L2, C-terminal domain ACEE_09030 PF00276 Ribosomal protein L23 ACEE_09035 PF00573 Ribosomal protein L4/L1 family ACEE_09040 PF00297 Ribosomal protein L3 ACEE_09045 PF00338 Ribosomal protein S10p/S20e ACEE_09050 PF04994 TfoX C-terminal domain ACEE_09050 PF04993 TfoX N-terminal domain ACEE_09055 PF01649 Ribosomal protein S20 ACEE_09060 PF03023 Lipid II flippase MurJ ACEE_09075 PF03841 L-seryl-tRNA selenium transferase ACEE_09075 PF12390 Selenocysteine synthase N terminal ACEE_09080 PF09107 Elongation factor SelB, winged helix ACEE_09080 PF09106 Elongation factor SelB, winged helix ACEE_09080 PF03144 Elongation factor Tu domain 2 ACEE_09080 PF00009 Elongation factor Tu GTP binding domain ACEE_09085 PF01029 NusB family ACEE_09085 PF01189 16S rRNA methyltransferase RsmB/F ACEE_09090 PF02254 TrkA-N domain ACEE_09090 PF02080 TrkA-C domain ACEE_09095 PF00206 Lyase ACEE_09095 PF10415 Fumarase C C-terminus ACEE_09105 PF01523 Putative modulator of DNA gyrase ACEE_09110 PF01171 PP-loop family ACEE_09110 PF09179 TilS substrate binding domain ACEE_09110 PF11734 TilS substrate C-terminal domain ACEE_09120 PF00589 Phage integrase family ACEE_09120 PF02899 Phage integrase, N-terminal SAM-like domain ACEE_09180 PF03808 Glycosyl transferase WecB/TagA/CpsF family ACEE_09185 PF06899 WzyE protein, O-antigen assembly polymerase ACEE_09190 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 ACEE_09195 PF03063 Prismane/CO dehydrogenase family ACEE_09200 PF00970 Oxidoreductase FAD-binding domain ACEE_09200 PF00111 2Fe-2S iron-sulfur cluster binding domain ACEE_09200 PF00175 Oxidoreductase NAD-binding domain ACEE_09205 PF01943 Polysaccharide biosynthesis protein ACEE_09210 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ACEE_09220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ACEE_09220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ACEE_09220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ACEE_09225 PF02350 UDP-N-acetylglucosamine 2-epimerase ACEE_09235 PF00953 Glycosyl transferase family 4 ACEE_09250 PF00664 ABC transporter transmembrane region ACEE_09250 PF00005 ABC transporter ACEE_09250 PF03412 Peptidase C39 family ACEE_09260 PF00202 Aminotransferase class-III ACEE_09265 PF01979 Amidohydrolase family ACEE_09270 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ACEE_09275 PF00701 Dihydrodipicolinate synthetase family ACEE_09280 PF00480 ROK family ACEE_09285 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase ACEE_09295 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ACEE_09295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ACEE_09295 PF16582 Middle domain of thiamine pyrophosphate ACEE_09300 PF00561 alpha/beta hydrolase fold ACEE_09310 PF01078 Magnesium chelatase, subunit ChlI ACEE_09310 PF13335 Magnesium chelatase, subunit ChlI C-terminal ACEE_09315 PF01494 FAD binding domain ACEE_09320 PF00149 Calcineurin-like phosphoesterase ACEE_09320 PF02872 5'-nucleotidase, C-terminal domain ACEE_09330 PF00623 RNA polymerase Rpb1, domain 2 ACEE_09330 PF05000 RNA polymerase Rpb1, domain 4 ACEE_09330 PF04998 RNA polymerase Rpb1, domain 5 ACEE_09330 PF04997 RNA polymerase Rpb1, domain 1 ACEE_09330 PF04983 RNA polymerase Rpb1, domain 3 ACEE_09335 PF04563 RNA polymerase beta subunit ACEE_09335 PF04561 RNA polymerase Rpb2, domain 2 ACEE_09335 PF04565 RNA polymerase Rpb2, domain 3 ACEE_09335 PF10385 RNA polymerase beta subunit external 1 domain ACEE_09335 PF00562 RNA polymerase Rpb2, domain 6 ACEE_09335 PF04560 RNA polymerase Rpb2, domain 7 ACEE_09340 PF00542 Ribosomal protein L7/L12 C-terminal domain ACEE_09340 PF16320 Ribosomal protein L7/L12 dimerisation domain ACEE_09345 PF00466 Ribosomal protein L10 ACEE_09350 PF00687 Ribosomal protein L1p/L10e family ACEE_09355 PF03946 Ribosomal protein L11, N-terminal domain ACEE_09355 PF00298 Ribosomal protein L11, RNA binding domain ACEE_09360 PF00467 KOW motif ACEE_09360 PF02357 Transcription termination factor nusG ACEE_09365 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ACEE_09375 PF03611 PTS system sugar-specific permease component ACEE_09380 PF03169 OPT oligopeptide transporter protein ACEE_09385 PF02481 DNA recombination-mediator protein A ACEE_09385 PF17782 DprA winged helix domain ACEE_09390 PF01327 Polypeptide deformylase ACEE_09395 PF01370 NAD dependent epimerase/dehydratase family ACEE_09400 PF04405 Domain of Unknown function (DUF542) ACEE_09400 PF01814 Hemerythrin HHE cation binding domain ACEE_09405 PF00893 Small Multidrug Resistance protein ACEE_09410 PF04175 Protein of unknown function (DUF406) ACEE_09425 PF01774 UreD urease accessory protein ACEE_09430 PF02492 CobW/HypB/UreG, nucleotide-binding domain ACEE_09435 PF01730 UreF ACEE_09440 PF05194 UreE urease accessory protein, C-terminal domain ACEE_09440 PF02814 UreE urease accessory protein, N-terminal domain ACEE_09450 PF01979 Amidohydrolase family ACEE_09450 PF00449 Urease alpha-subunit, N-terminal domain ACEE_09455 PF00699 Urease beta subunit ACEE_09460 PF00547 Urease, gamma subunit ACEE_09470 PF00005 ABC transporter ACEE_09480 PF01891 Cobalt uptake substrate-specific transmembrane region ACEE_09490 PF10670 Domain of unknown function (DUF4198) ACEE_09495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_09495 PF03466 LysR substrate binding domain ACEE_09505 PF03600 Citrate transporter ACEE_09505 PF02080 TrkA-C domain ACEE_09510 PF02080 TrkA-C domain ACEE_09510 PF03600 Citrate transporter ACEE_09520 PF01232 Mannitol dehydrogenase Rossmann domain ACEE_09520 PF08125 Mannitol dehydrogenase C-terminal domain ACEE_09525 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit ACEE_09525 PF02378 Phosphotransferase system, EIIC ACEE_09525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACEE_09530 PF01380 SIS domain ACEE_09535 PF08220 DeoR-like helix-turn-helix domain ACEE_09535 PF00455 DeoR C terminal sensor domain ACEE_09545 PF18254 HMW1 domain 2 ACEE_09545 PF18071 HMW1C N-terminal ACEE_09550 PF04055 Radical SAM superfamily ACEE_09550 PF18693 TRAM domain ACEE_09550 PF00919 Uncharacterized protein family UPF0004 ACEE_09555 PF01048 Phosphorylase superfamily ACEE_09565 PF04102 SlyX ACEE_09570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACEE_09570 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ACEE_09575 PF08348 YheO-like PAS domain ACEE_09575 PF13309 HTH domain ACEE_09580 PF02635 DsrE/DsrF-like family ACEE_09585 PF02635 DsrE/DsrF-like family ACEE_09590 PF04077 DsrH like protein ACEE_09595 PF01501 Glycosyl transferase family 8 ACEE_09595 PF08759 Glycosyltransferase GT-D fold ACEE_09620 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ACEE_09625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACEE_09625 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACEE_09630 PF00231 ATP synthase ACEE_09635 PF02874 ATP synthase alpha/beta family, beta-barrel domain ACEE_09635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ACEE_09635 PF00306 ATP synthase alpha/beta chain, C terminal domain ACEE_09640 PF00213 ATP synthase delta (OSCP) subunit ACEE_09645 PF00430 ATP synthase B/B' CF(0) ACEE_09650 PF00137 ATP synthase subunit C ACEE_09655 PF00119 ATP synthase A chain ACEE_09665 PF02527 rRNA small subunit methyltransferase G ACEE_09670 PF13932 GidA associated domain ACEE_09670 PF01134 Glucose inhibited division protein A ACEE_09685 PF03613 PTS system mannose/fructose/sorbose family IID component ACEE_09690 PF03609 PTS system sorbose-specific iic component ACEE_09695 PF03610 PTS system fructose IIA component ACEE_09695 PF03830 PTS system sorbose subfamily IIB component ACEE_09700 PF02447 GntP family permease ACEE_09705 PF01202 Shikimate kinase ACEE_09710 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family ACEE_09710 PF00356 Bacterial regulatory proteins, lacI family ACEE_09715 PF00356 Bacterial regulatory proteins, lacI family ACEE_09720 PF05025 RbsD / FucU transport protein family ACEE_09725 PF00005 ABC transporter ACEE_09730 PF02653 Branched-chain amino acid transport system / permease component ACEE_09735 PF13407 Periplasmic binding protein domain ACEE_09740 PF00294 pfkB family carbohydrate kinase ACEE_09745 PF02810 SEC-C motif ACEE_09750 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACEE_09755 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_09760 PF00005 ABC transporter ACEE_09765 PF05188 MutS domain II ACEE_09765 PF00488 MutS domain V ACEE_09765 PF01624 MutS domain I ACEE_09765 PF05192 MutS domain III ACEE_09765 PF05190 MutS family domain IV ACEE_09775 PF02590 Predicted SPOUT methyltransferase ACEE_09780 PF03717 Penicillin-binding Protein dimerisation domain ACEE_09780 PF00905 Penicillin binding protein transpeptidase domain ACEE_09785 PF01098 Cell cycle protein ACEE_09790 PF03330 Lytic transglycolase ACEE_09795 PF07943 Penicillin-binding protein 5, C-terminal domain ACEE_09795 PF00768 D-alanyl-D-alanine carboxypeptidase ACEE_09800 PF04359 Protein of unknown function (DUF493) ACEE_09805 PF03099 Biotin/lipoate A/B protein ligase family ACEE_09810 PF04055 Radical SAM superfamily ACEE_09820 PF17311 Family of unknown function (DUF5358) ACEE_09825 PF00248 Aldo/keto reductase family ACEE_09830 PF00210 Ferritin-like domain ACEE_09835 PF02678 Pirin ACEE_09835 PF17954 Quercetinase C-terminal cupin domain ACEE_09845 PF05167 Uncharacterised ACR (DUF711) ACEE_09855 PF03313 Serine dehydratase alpha chain ACEE_09870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACEE_09870 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ACEE_09875 PF04143 Sulphur transport ACEE_09880 PF01206 Sulfurtransferase TusA ACEE_09885 PF00596 Class II Aldolase and Adducin N-terminal domain ACEE_09890 PF01261 Xylose isomerase-like TIM barrel ACEE_09895 PF08220 DeoR-like helix-turn-helix domain ACEE_09895 PF00455 DeoR C terminal sensor domain ACEE_09905 PF03611 PTS system sugar-specific permease component ACEE_09910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 ACEE_09915 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ACEE_09920 PF08267 Cobalamin-independent synthase, N-terminal domain ACEE_09920 PF01717 Cobalamin-independent synthase, Catalytic domain ACEE_09935 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACEE_09940 PF00005 ABC transporter ACEE_09945 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_09955 PF07274 Protein of unknown function (DUF1440) ACEE_09960 PF00005 ABC transporter ACEE_09965 PF01032 FecCD transport family ACEE_09970 PF01497 Periplasmic binding protein ACEE_09975 PF07715 TonB-dependent Receptor Plug Domain ACEE_09975 PF00593 TonB dependent receptor ACEE_09985 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ACEE_09985 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ACEE_09985 PF02769 AIR synthase related protein, C-terminal domain ACEE_09995 PF07690 Major Facilitator Superfamily ACEE_10000 PF00291 Pyridoxal-phosphate dependent enzyme ACEE_10000 PF14821 Threonine synthase N terminus ACEE_10005 PF12805 FUSC-like inner membrane protein yccS ACEE_10015 PF07519 Tannase and feruloyl esterase ACEE_10025 PF06039 Malate:quinone oxidoreductase (Mqo) ACEE_10030 PF01070 FMN-dependent dehydrogenase ACEE_10040 PF03466 LysR substrate binding domain ACEE_10040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_10045 PF01361 Tautomerase enzyme ACEE_10050 PF00561 alpha/beta hydrolase fold ACEE_10055 PF07690 Major Facilitator Superfamily ACEE_10060 PF04545 Sigma-70, region 4 ACEE_10060 PF00140 Sigma-70 factor, region 1.2 ACEE_10060 PF04542 Sigma-70 region 2 ACEE_10065 PF02653 Branched-chain amino acid transport system / permease component ACEE_10070 PF00005 ABC transporter ACEE_10075 PF13407 Periplasmic binding protein domain ACEE_10085 PF02028 BCCT, betaine/carnitine/choline family transporter ACEE_10090 PF00999 Sodium/hydrogen exchanger family ACEE_10090 PF02254 TrkA-N domain ACEE_10105 PF00107 Zinc-binding dehydrogenase ACEE_10105 PF08240 Alcohol dehydrogenase GroES-like domain ACEE_10110 PF00881 Nitroreductase family ACEE_10150 PF03937 Flavinator of succinate dehydrogenase ACEE_10155 PF02401 LytB protein ACEE_10160 PF01252 Signal peptidase (SPase) II ACEE_10165 PF00543 Nitrogen regulatory protein P-II ACEE_10170 PF01501 Glycosyl transferase family 8 ACEE_10175 PF00994 Probable molybdopterin binding domain ACEE_10180 PF03918 Cytochrome C biogenesis protein ACEE_10185 PF03918 Cytochrome C biogenesis protein ACEE_10195 PF08534 Redoxin ACEE_10200 PF00485 Phosphoribulokinase / Uridine kinase family ACEE_10225 PF00009 Elongation factor Tu GTP binding domain ACEE_10225 PF03144 Elongation factor Tu domain 2 ACEE_10225 PF03143 Elongation factor Tu C-terminal domain ACEE_10235 PF08543 Phosphomethylpyrimidine kinase ACEE_10245 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ACEE_10250 PF07732 Multicopper oxidase ACEE_10250 PF07731 Multicopper oxidase ACEE_10255 PF01553 Acyltransferase ACEE_10260 PF08534 Redoxin ACEE_10265 PF01389 OmpA-like transmembrane domain ACEE_10265 PF00691 OmpA family ACEE_10270 PF01389 OmpA-like transmembrane domain ACEE_10270 PF00691 OmpA family ACEE_10275 PF02913 FAD linked oxidases, C-terminal domain ACEE_10275 PF01565 FAD binding domain ACEE_10275 PF13183 4Fe-4S dicluster domain ACEE_10280 PF03061 Thioesterase superfamily ACEE_10285 PF14849 YidC periplasmic domain ACEE_10285 PF02096 60Kd inner membrane protein ACEE_10290 PF01926 50S ribosome-binding GTPase ACEE_10290 PF10396 GTP-binding protein TrmE N-terminus ACEE_10290 PF12631 MnmE helical domain ACEE_10300 PF00258 Flavodoxin ACEE_10305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ACEE_10305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ACEE_10310 PF03480 Bacterial extracellular solute-binding protein, family 7 ACEE_10315 PF03480 Bacterial extracellular solute-binding protein, family 7 ACEE_10320 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component ACEE_10325 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component ACEE_10330 PF04074 YhcH/YjgK/YiaL ACEE_10335 PF02615 Malate/L-lactate dehydrogenase ACEE_10340 PF06821 Serine hydrolase ACEE_10350 PF04055 Radical SAM superfamily ACEE_10355 PF00043 Glutathione S-transferase, C-terminal domain ACEE_10355 PF02798 Glutathione S-transferase, N-terminal domain ACEE_10360 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ACEE_10360 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ACEE_10370 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ACEE_10370 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ACEE_10375 PF00005 ABC transporter ACEE_10380 PF00551 Formyl transferase ACEE_10380 PF02911 Formyl transferase, C-terminal domain ACEE_10390 PF01205 Uncharacterized protein family UPF0029 ACEE_10390 PF09186 Domain of unknown function (DUF1949) ACEE_10395 PF02386 Cation transport protein ACEE_10400 PF12724 Flavodoxin domain ACEE_10405 PF01741 Large-conductance mechanosensitive channel, MscL ACEE_10420 PF07724 AAA domain (Cdc48 subfamily) ACEE_10420 PF10431 C-terminal, D2-small domain, of ClpB protein ACEE_10420 PF00004 ATPase family associated with various cellular activities (AAA) ACEE_10425 PF00227 Proteasome subunit ACEE_10435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ACEE_10440 PF00730 HhH-GPD superfamily base excision DNA repair protein ACEE_10440 PF14815 NUDIX domain ACEE_10445 PF04362 Bacterial Fe(2+) trafficking ACEE_10450 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain ACEE_10450 PF01464 Transglycosylase SLT domain ACEE_10475 PF02881 SRP54-type protein, helical bundle domain ACEE_10475 PF00448 SRP54-type protein, GTPase domain ACEE_10475 PF02978 Signal peptide binding domain ACEE_10480 PF01380 SIS domain ACEE_10485 PF03702 Anhydro-N-acetylmuramic acid kinase ACEE_10495 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ACEE_10500 PF03605 Anaerobic c4-dicarboxylate membrane transporter ACEE_10505 PF01678 Diaminopimelate epimerase ACEE_10510 PF00152 tRNA synthetases class II (D, K and N) ACEE_10515 PF02910 Fumarate reductase flavoprotein C-term ACEE_10515 PF00890 FAD binding domain ACEE_10520 PF13183 4Fe-4S dicluster domain ACEE_10520 PF13085 2Fe-2S iron-sulfur cluster binding domain ACEE_10525 PF02300 Fumarate reductase subunit C ACEE_10530 PF02313 Fumarate reductase subunit D ACEE_10535 PF02525 Flavodoxin-like fold ACEE_10540 PF12838 4Fe-4S dicluster domain ACEE_10540 PF13187 4Fe-4S dicluster domain ACEE_10545 PF03927 NapD protein ACEE_10550 PF10518 TAT (twin-arginine translocation) pathway signal sequence ACEE_10550 PF04879 Molybdopterin oxidoreductase Fe4S4 domain ACEE_10550 PF01568 Molydopterin dinucleotide binding domain ACEE_10550 PF00384 Molybdopterin oxidoreductase ACEE_10555 PF12838 4Fe-4S dicluster domain ACEE_10555 PF12800 4Fe-4S binding domain ACEE_10560 PF12801 4Fe-4S binding domain ACEE_10560 PF12837 4Fe-4S binding domain ACEE_10565 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) ACEE_10570 PF03264 NapC/NirT cytochrome c family, N-terminal region ACEE_10575 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ACEE_10575 PF01565 FAD binding domain ACEE_10580 PF08279 HTH domain ACEE_10580 PF02237 Biotin protein ligase C terminal domain ACEE_10580 PF03099 Biotin/lipoate A/B protein ligase family ACEE_10585 PF04175 Protein of unknown function (DUF406) ACEE_10590 PF03222 Tryptophan/tyrosine permease family ACEE_10600 PF02655 ATP-grasp domain ACEE_10600 PF18419 ATP-grasp-like domain ACEE_10600 PF04262 Glutamate-cysteine ligase ACEE_10605 PF02666 Phosphatidylserine decarboxylase ACEE_10615 PF08525 Opacity-associated protein A N-terminal motif ACEE_10615 PF04225 Opacity-associated protein A LysM-like domain ACEE_10625 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACEE_10630 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ACEE_10635 PF00164 Ribosomal protein S12/S23 ACEE_10640 PF00177 Ribosomal protein S7p/S5e ACEE_10645 PF00009 Elongation factor Tu GTP binding domain ACEE_10645 PF03764 Elongation factor G, domain IV ACEE_10645 PF14492 Elongation Factor G, domain II ACEE_10645 PF00679 Elongation factor G C-terminus ACEE_10645 PF03144 Elongation factor Tu domain 2 ACEE_10650 PF03143 Elongation factor Tu C-terminal domain ACEE_10650 PF00009 Elongation factor Tu GTP binding domain ACEE_10650 PF03144 Elongation factor Tu domain 2 ACEE_10655 PF01040 UbiA prenyltransferase family ACEE_10660 PF18389 TrmO C-terminal domain ACEE_10660 PF01980 tRNA-methyltransferase O ACEE_10670 PF00230 Major intrinsic protein ACEE_10680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACEE_10685 PF00585 C-terminal regulatory domain of Threonine dehydratase ACEE_10685 PF00291 Pyridoxal-phosphate dependent enzyme ACEE_10690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ACEE_10690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ACEE_10690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ACEE_10690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ACEE_10695 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ACEE_10700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACEE_10700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACEE_10705 PF01297 Zinc-uptake complex component A periplasmic ACEE_10710 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ACEE_10715 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ACEE_10725 PF10150 Ribonuclease E/G family ACEE_10725 PF12111 Polyribonucleotide phosphorylase C terminal ACEE_10725 PF00575 S1 RNA binding domain ACEE_10735 PF08264 Anticodon-binding domain of tRNA ACEE_10735 PF00133 tRNA synthetases class I (I, L, M and V) ACEE_10735 PF10458 Valyl tRNA synthetase tRNA binding arm ACEE_10745 PF13673 Acetyltransferase (GNAT) domain ACEE_10750 PF04364 DNA polymerase III chi subunit, HolC ACEE_10755 PF01476 LysM domain ACEE_10760 PF05697 Bacterial trigger factor protein (TF) ACEE_10760 PF05698 Bacterial trigger factor protein (TF) C-terminus ACEE_10760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ACEE_10765 PF00581 Rhodanese-like domain ACEE_10770 PF02556 Preprotein translocase subunit SecB ACEE_10775 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACEE_10775 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ACEE_10780 PF00132 Bacterial transferase hexapeptide (six repeats) ACEE_10780 PF06426 Serine acetyltransferase, N-terminal ACEE_10785 PF01521 Iron-sulphur cluster biosynthesis ACEE_10800 PF01943 Polysaccharide biosynthesis protein ACEE_10805 PF03275 UDP-galactopyranose mutase ACEE_10815 PF04991 LicD family ACEE_10820 PF00534 Glycosyl transferases group 1 ACEE_10820 PF13439 Glycosyltransferase Family 4 ACEE_10825 PF00535 Glycosyl transferase family 2 ACEE_10830 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ACEE_10835 PF08240 Alcohol dehydrogenase GroES-like domain ACEE_10845 PF02397 Bacterial sugar transferase ACEE_10855 PF16363 GDP-mannose 4,6 dehydratase ACEE_10860 PF00483 Nucleotidyl transferase ACEE_10865 PF01165 Ribosomal protein S21 ACEE_10870 PF01807 CHC2 zinc finger ACEE_10870 PF10410 DnaB-helicase binding domain of primase ACEE_10870 PF08278 DNA primase DnaG DnaB-binding ACEE_10870 PF08275 DNA primase catalytic core, N-terminal domain ACEE_10875 PF04545 Sigma-70, region 4 ACEE_10875 PF04546 Sigma-70, non-essential region ACEE_10875 PF04539 Sigma-70 region 3 ACEE_10875 PF04542 Sigma-70 region 2 ACEE_10875 PF00140 Sigma-70 factor, region 1.2 ACEE_10875 PF03979 Sigma-70 factor, region 1.1 ACEE_10880 PF03831 PhnA domain ACEE_10880 PF08274 PhnA Zinc-Ribbon ACEE_10885 PF00034 Cytochrome c ACEE_10885 PF14376 Haem-binding domain ACEE_10885 PF03150 Di-haem cytochrome c peroxidase ACEE_10890 PF02594 Uncharacterised ACR, YggU family COG1872 ACEE_10895 PF02325 YGGT family ACEE_10900 PF04320 Protein with unknown function (DUF469) ACEE_10905 PF02390 Putative methyltransferase ACEE_10910 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ACEE_10910 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACEE_10915 PF02504 Fatty acid synthesis protein ACEE_10920 PF01783 Ribosomal L32p protein family ACEE_10925 PF02620 Large ribosomal RNA subunit accumulation protein YceD ACEE_10930 PF01578 Cytochrome C assembly protein ACEE_10935 PF03471 Transporter associated domain ACEE_10935 PF01595 Cyclin M transmembrane N-terminal domain ACEE_10935 PF00571 CBS domain ACEE_10940 PF00209 Sodium:neurotransmitter symporter family ACEE_10950 PF03610 PTS system fructose IIA component ACEE_10950 PF03830 PTS system sorbose subfamily IIB component ACEE_10955 PF03609 PTS system sorbose-specific iic component ACEE_10960 PF03613 PTS system mannose/fructose/sorbose family IID component ACEE_10965 PF06173 Protein of unknown function (DUF986) ACEE_10970 PF01238 Phosphomannose isomerase type I ACEE_10985 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_10990 PF00005 ABC transporter ACEE_10990 PF08402 TOBE domain ACEE_11000 PF01479 S4 domain ACEE_11000 PF00579 tRNA synthetases class I (W and Y) ACEE_11010 PF08206 Ribonuclease B OB domain ACEE_11010 PF08461 Ribonuclease R winged-helix domain ACEE_11010 PF17876 Cold shock domain ACEE_11010 PF00575 S1 RNA binding domain ACEE_11010 PF00773 RNB domain ACEE_11015 PF00578 AhpC/TSA family ACEE_11020 PF00440 Bacterial regulatory proteins, tetR family ACEE_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_11025 PF03466 LysR substrate binding domain ACEE_11030 PF08534 Redoxin ACEE_11030 PF00462 Glutaredoxin ACEE_11035 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ACEE_11040 PF01225 Mur ligase family, catalytic domain ACEE_11040 PF02875 Mur ligase family, glutamate ligase domain ACEE_11040 PF08245 Mur ligase middle domain ACEE_11045 PF00756 Putative esterase ACEE_11050 PF02798 Glutathione S-transferase, N-terminal domain ACEE_11055 PF00107 Zinc-binding dehydrogenase ACEE_11055 PF08240 Alcohol dehydrogenase GroES-like domain ACEE_11060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ACEE_11060 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase ACEE_11065 PF11867 Domain of unknown function (DUF3387) ACEE_11065 PF18766 SWI2/SNF2 ATPase ACEE_11065 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ACEE_11075 PF01420 Type I restriction modification DNA specificity domain ACEE_11085 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit ACEE_11090 PF00364 Biotin-requiring enzyme ACEE_11090 PF00682 HMGL-like ACEE_11090 PF02436 Conserved carboxylase domain ACEE_11095 PF04277 Oxaloacetate decarboxylase, gamma chain ACEE_11100 PF14743 DNA ligase OB-like domain ACEE_11100 PF01068 ATP dependent DNA ligase domain ACEE_11135 PF00308 Bacterial dnaA protein ACEE_11140 PF00005 ABC transporter ACEE_11145 PF03379 CcmB protein ACEE_11150 PF01578 Cytochrome C assembly protein ACEE_11155 PF04995 Heme exporter protein D (CcmD) ACEE_11160 PF03100 CcmE ACEE_11165 PF01578 Cytochrome C assembly protein ACEE_11165 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ACEE_11185 PF01266 FAD dependent oxidoreductase ACEE_11200 PF04972 BON domain ACEE_11205 PF13580 SIS domain ACEE_11210 PF02021 Uncharacterised protein family UPF0102 ACEE_11215 PF04348 LppC putative lipoprotein ACEE_11220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ACEE_11225 PF04315 Elongation factor P hydroxylase ACEE_11230 PF11412 Disulphide bond corrector protein DsbC ACEE_11230 PF02683 Cytochrome C biogenesis protein transmembrane region ACEE_11230 PF13098 Thioredoxin-like domain ACEE_11240 PF01381 Helix-turn-helix ACEE_11245 PF01699 Sodium/calcium exchanger protein ACEE_11250 PF01161 Phosphatidylethanolamine-binding protein ACEE_11255 PF00005 ABC transporter ACEE_11260 PF00497 Bacterial extracellular solute-binding proteins, family 3 ACEE_11265 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_11270 PF00528 Binding-protein-dependent transport system inner membrane component ACEE_11275 PF09313 Domain of unknown function (DUF1971) ACEE_11275 PF03848 Tellurite resistance protein TehB ACEE_11280 PF01613 Flavin reductase like domain ACEE_11285 PF04269 Protein of unknown function, DUF440 ACEE_11295 PF02881 SRP54-type protein, helical bundle domain ACEE_11295 PF00448 SRP54-type protein, GTPase domain ACEE_11300 PF00005 ABC transporter ACEE_11305 PF18075 FtsX extracellular domain ACEE_11320 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ACEE_11325 PF00156 Phosphoribosyl transferase domain ACEE_11330 PF03466 LysR substrate binding domain ACEE_11330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ACEE_11335 PF05175 Methyltransferase small domain ACEE_11335 PF08468 Methyltransferase small domain N-terminal ACEE_11345 PF00583 Acetyltransferase (GNAT) family ACEE_11350 PF00270 DEAD/DEAH box helicase ACEE_11350 PF00271 Helicase conserved C-terminal domain ACEE_11355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ACEE_11355 PF01243 Pyridoxamine 5'-phosphate oxidase ACEE_11360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ACEE_11365 PF01184 GPR1/FUN34/yaaH family ACEE_11370 PF13416 Bacterial extracellular solute-binding protein ACEE_11375 PF00005 ABC transporter ACEE_11385 PF01032 FecCD transport family ACEE_11390 PF00593 TonB dependent receptor ACEE_11390 PF07715 TonB-dependent Receptor Plug Domain ACEE_11400 PF01259 SAICAR synthetase ACEE_11405 PF01634 ATP phosphoribosyltransferase ACEE_11405 PF08029 HisG, C-terminal domain ACEE_11410 PF00815 Histidinol dehydrogenase ACEE_11415 PF00155 Aminotransferase class I and II ACEE_11420 PF01797 Transposase IS200 like ACEE_11425 PF00475 Imidazoleglycerol-phosphate dehydratase ACEE_11435 PF00117 Glutamine amidotransferase class-I ACEE_11440 PF00977 Histidine biosynthesis protein ACEE_11445 PF00977 Histidine biosynthesis protein ACEE_11455 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ACEE_11455 PF01502 Phosphoribosyl-AMP cyclohydrolase ACEE_11460 PF02592 Putative vitamin uptake transporter ACEE_11465 PF00557 Metallopeptidase family M24 ACEE_11470 PF13361 UvrD-like helicase C-terminal domain ACEE_11470 PF00580 UvrD/REP helicase N-terminal domain ACEE_11475 PF13018 Extended Signal Peptide of Type V secretion system ACEE_11475 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin ACEE_11475 PF03895 YadA-like membrane anchor domain ACEE_11475 PF05662 Coiled stalk of trimeric autotransporter adhesin ACEE_11480 PF02687 FtsX-like permease family ACEE_11480 PF12704 MacB-like periplasmic core domain ACEE_11485 PF00005 ABC transporter ACEE_11490 PF02687 FtsX-like permease family ACEE_11490 PF12704 MacB-like periplasmic core domain ACEE_11495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACEE_11495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACEE_11500 PF00793 DAHP synthetase I family ACEE_11505 PF13369 Transglutaminase-like superfamily ACEE_11510 PF13847 Methyltransferase domain ACEE_11510 PF17827 PrmC N-terminal domain ACEE_11520 PF00472 RF-1 domain ACEE_11520 PF03462 PCRF domain