locus-tag class description CYK57_00001 PF00308 Bacterial dnaA protein CYK57_00001 PF08299 Bacterial dnaA protein helix-turn-helix CYK57_00001 PF11638 DnaA N-terminal domain CYK57_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain CYK57_00002 PF02767 DNA polymerase III beta subunit, central domain CYK57_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain CYK57_00003 PF02463 RecF/RecN/SMC N terminal domain CYK57_00004 PF00080 Copper/zinc superoxide dismutase (SODC) CYK57_00005 PF02774 Semialdehyde dehydrogenase, dimerisation domain CYK57_00005 PF01118 Semialdehyde dehydrogenase, NAD binding domain CYK57_00007 PF02684 Lipid-A-disaccharide synthetase CYK57_00008 PF01343 Peptidase family S49 CYK57_00008 PF08496 Peptidase family S49 N-terminal CYK57_00010 PF02381 MraZ protein, putative antitoxin-like CYK57_00011 PF01795 MraW methylase family CYK57_00012 PF04999 Cell division protein FtsL CYK57_00013 PF00905 Penicillin binding protein transpeptidase domain CYK57_00013 PF03717 Penicillin-binding Protein dimerisation domain CYK57_00014 PF01225 Mur ligase family, catalytic domain CYK57_00014 PF02875 Mur ligase family, glutamate ligase domain CYK57_00014 PF08245 Mur ligase middle domain CYK57_00015 PF01225 Mur ligase family, catalytic domain CYK57_00015 PF02875 Mur ligase family, glutamate ligase domain CYK57_00015 PF08245 Mur ligase middle domain CYK57_00016 PF00953 Glycosyl transferase family 4 CYK57_00016 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CYK57_00017 PF02875 Mur ligase family, glutamate ligase domain CYK57_00017 PF08245 Mur ligase middle domain CYK57_00018 PF01098 Cell cycle protein CYK57_00019 PF04101 Glycosyltransferase family 28 C-terminal domain CYK57_00019 PF03033 Glycosyltransferase family 28 N-terminal domain CYK57_00020 PF01225 Mur ligase family, catalytic domain CYK57_00020 PF02875 Mur ligase family, glutamate ligase domain CYK57_00020 PF08245 Mur ligase middle domain CYK57_00021 PF01820 D-ala D-ala ligase N-terminus CYK57_00021 PF07478 D-ala D-ala ligase C-terminus CYK57_00022 PF03799 Cell division protein FtsQ CYK57_00022 PF08478 POTRA domain, FtsQ-type CYK57_00023 PF02491 SHS2 domain inserted in FTSA CYK57_00024 PF12327 FtsZ family, C-terminal domain CYK57_00024 PF00091 Tubulin/FtsZ family, GTPase domain CYK57_00025 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CYK57_00026 PF02463 RecF/RecN/SMC N terminal domain CYK57_00027 PF00005 ABC transporter CYK57_00027 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYK57_00028 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00028 PF12911 N-terminal TM domain of oligopeptide transport permease C CYK57_00029 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYK57_00031 PF16658 Class II release factor RF3, C-terminal domain CYK57_00031 PF00009 Elongation factor Tu GTP binding domain CYK57_00031 PF03144 Elongation factor Tu domain 2 CYK57_00032 PF01381 Helix-turn-helix CYK57_00032 PF00717 Peptidase S24-like CYK57_00039 PF06122 Conjugative relaxosome accessory transposon protein CYK57_00041 PF06470 SMC proteins Flexible Hinge Domain CYK57_00041 PF02463 RecF/RecN/SMC N terminal domain CYK57_00045 PF04002 RadC-like JAB domain CYK57_00046 PF00092 von Willebrand factor type A domain CYK57_00050 PF07728 AAA domain (dynein-related subfamily) CYK57_00050 PF08406 CbbQ/NirQ/NorQ C-terminal CYK57_00055 PF04231 Endonuclease I CYK57_00057 PF06986 Type-1V conjugative transfer system mating pair stabilisation CYK57_00058 PF06834 TraU protein CYK57_00063 PF13098 Thioredoxin-like domain CYK57_00063 PF10411 Disulfide bond isomerase protein N-terminus CYK57_00084 PF02384 N-6 DNA Methylase CYK57_00087 PF14579 Helix-hairpin-helix motif CYK57_00087 PF00929 Exonuclease CYK57_00087 PF02811 PHP domain CYK57_00087 PF07733 Bacterial DNA polymerase III alpha NTPase domain CYK57_00087 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CYK57_00087 PF11490 DNA polymerase III polC-type N-terminus II CYK57_00088 PF00717 Peptidase S24-like CYK57_00089 PF13438 Domain of unknown function (DUF4113) CYK57_00089 PF00817 impB/mucB/samB family CYK57_00089 PF11799 impB/mucB/samB family C-terminal domain CYK57_00091 PF00809 Pterin binding enzyme CYK57_00092 PF01636 Phosphotransferase enzyme family CYK57_00093 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CYK57_00094 PF01636 Phosphotransferase enzyme family CYK57_00095 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CYK57_00096 PF07690 Major Facilitator Superfamily CYK57_00099 PF00398 Ribosomal RNA adenine dimethylase CYK57_00101 PF02909 Tetracyclin repressor-like, C-terminal domain CYK57_00101 PF00440 Bacterial regulatory proteins, tetR family CYK57_00102 PF07690 Major Facilitator Superfamily CYK57_00105 PF01526 Tn3 transposase DDE domain CYK57_00105 PF13700 Domain of unknown function (DUF4158) CYK57_00106 PF13438 Domain of unknown function (DUF4113) CYK57_00106 PF00817 impB/mucB/samB family CYK57_00106 PF11799 impB/mucB/samB family C-terminal domain CYK57_00114 PF01195 Peptidyl-tRNA hydrolase CYK57_00115 PF01926 50S ribosome-binding GTPase CYK57_00115 PF06071 Protein of unknown function (DUF933) CYK57_00118 PF05433 Glycine zipper 2TM domain CYK57_00119 PF06185 YecM protein CYK57_00120 PF05746 DALR anticodon binding domain CYK57_00120 PF00750 tRNA synthetases class I (R) CYK57_00120 PF03485 Arginyl tRNA synthetase N terminal domain CYK57_00121 PF01926 50S ribosome-binding GTPase CYK57_00121 PF01018 GTP1/OBG CYK57_00122 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) CYK57_00123 PF08032 RNA 2'-O ribose methyltransferase substrate binding CYK57_00123 PF00588 SpoU rRNA Methylase family CYK57_00124 PF13091 PLD-like domain CYK57_00125 PF08264 Anticodon-binding domain of tRNA CYK57_00125 PF00133 tRNA synthetases class I (I, L, M and V) CYK57_00125 PF06827 Zinc finger found in FPG and IleRS CYK57_00126 PF06574 FAD synthetase CYK57_00126 PF01687 Riboflavin kinase CYK57_00127 PF13521 AAA domain CYK57_00127 PF01467 Cytidylyltransferase-like CYK57_00128 PF00149 Calcineurin-like phosphoesterase CYK57_00129 PF00072 Response regulator receiver domain CYK57_00129 PF00486 Transcriptional regulatory protein, C terminal CYK57_00133 PF01168 Alanine racemase, N-terminal domain CYK57_00134 PF03144 Elongation factor Tu domain 2 CYK57_00134 PF00009 Elongation factor Tu GTP binding domain CYK57_00134 PF00679 Elongation factor G C-terminus CYK57_00135 PF00462 Glutaredoxin CYK57_00136 PF01138 3' exoribonuclease family, domain 1 CYK57_00136 PF03725 3' exoribonuclease family, domain 2 CYK57_00137 PF08340 Domain of unknown function (DUF1732) CYK57_00137 PF03755 YicC-like family, N-terminal region CYK57_00138 PF01571 Aminomethyltransferase folate-binding domain CYK57_00139 PF00037 4Fe-4S binding domain CYK57_00140 PF00196 Bacterial regulatory proteins, luxR family CYK57_00140 PF00072 Response regulator receiver domain CYK57_00142 PF10672 S-adenosylmethionine-dependent methyltransferase CYK57_00142 PF02926 THUMP domain CYK57_00142 PF01170 Putative RNA methylase family UPF0020 CYK57_00143 PF00588 SpoU rRNA Methylase family CYK57_00144 PF00923 Transaldolase/Fructose-6-phosphate aldolase CYK57_00151 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYK57_00152 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYK57_00153 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00154 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00154 PF12911 N-terminal TM domain of oligopeptide transport permease C CYK57_00155 PF00005 ABC transporter CYK57_00155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYK57_00156 PF00005 ABC transporter CYK57_00156 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYK57_00157 PF06146 Phosphate-starvation-inducible E CYK57_00159 PF01042 Endoribonuclease L-PSP CYK57_00160 PF01063 Amino-transferase class IV CYK57_00161 PF00462 Glutaredoxin CYK57_00162 PF02132 RecR protein CYK57_00162 PF13662 Toprim domain CYK57_00163 PF02575 YbaB/EbfC DNA-binding family CYK57_00164 PF03544 Gram-negative bacterial TonB protein C-terminal CYK57_00165 PF02472 Biopolymer transport protein ExbD/TolR CYK57_00166 PF01618 MotA/TolQ/ExbB proton channel family CYK57_00167 PF00581 Rhodanese-like domain CYK57_00169 PF03610 PTS system fructose IIA component CYK57_00169 PF05524 PEP-utilising enzyme, N-terminal CYK57_00169 PF00391 PEP-utilising enzyme, mobile domain CYK57_00169 PF00381 PTS HPr component phosphorylation site CYK57_00170 PF02734 DAK2 domain CYK57_00171 PF02733 Dak1 domain CYK57_00172 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYK57_00173 PF02348 Cytidylyltransferase CYK57_00174 PF06078 Bacterial protein of unknown function (DUF937) CYK57_00175 PF09297 NADH pyrophosphatase zinc ribbon domain CYK57_00175 PF00293 NUDIX domain CYK57_00176 PF00849 RNA pseudouridylate synthase CYK57_00178 PF04186 FxsA cytoplasmic membrane protein CYK57_00179 PF00557 Metallopeptidase family M24 CYK57_00180 PF01206 Sulfurtransferase TusA CYK57_00181 PF06877 Regulator of ribonuclease activity B CYK57_00182 PF01926 50S ribosome-binding GTPase CYK57_00184 PF02535 ZIP Zinc transporter CYK57_00185 PF00920 Dehydratase family CYK57_00187 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYK57_00187 PF00205 Thiamine pyrophosphate enzyme, central domain CYK57_00187 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYK57_00189 PF02335 Cytochrome c552 CYK57_00191 PF13247 4Fe-4S dicluster domain CYK57_00192 PF03916 Polysulphide reductase, NrfD CYK57_00194 PF05658 Head domain of trimeric autotransporter adhesin CYK57_00194 PF05662 Coiled stalk of trimeric autotransporter adhesin CYK57_00194 PF13018 Extended Signal Peptide of Type V secretion system CYK57_00194 PF03895 YadA-like membrane anchor domain CYK57_00194 PF05658 Head domain of trimeric autotransporter adhesin CYK57_00194 PF05662 Coiled stalk of trimeric autotransporter adhesin CYK57_00194 PF03895 YadA-like membrane anchor domain CYK57_00194 PF03895 YadA-like membrane anchor domain CYK57_00194 PF13018 Extended Signal Peptide of Type V secretion system CYK57_00194 PF13018 Extended Signal Peptide of Type V secretion system CYK57_00194 PF05658 Head domain of trimeric autotransporter adhesin CYK57_00194 PF03895 YadA-like membrane anchor domain CYK57_00194 PF13018 Extended Signal Peptide of Type V secretion system CYK57_00194 PF05662 Coiled stalk of trimeric autotransporter adhesin CYK57_00194 PF05658 Head domain of trimeric autotransporter adhesin CYK57_00194 PF05662 Coiled stalk of trimeric autotransporter adhesin CYK57_00195 PF00860 Permease family CYK57_00196 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CYK57_00196 PF00171 Aldehyde dehydrogenase family CYK57_00196 PF01619 Proline dehydrogenase CYK57_00196 PF14850 DNA-binding domain of Proline dehydrogenase CYK57_00198 PF00474 Sodium:solute symporter family CYK57_00199 PF09339 IclR helix-turn-helix domain CYK57_00199 PF01614 Bacterial transcriptional regulator CYK57_00200 PF01812 5-formyltetrahydrofolate cyclo-ligase family CYK57_00201 PF05164 Cell division protein ZapA CYK57_00202 PF03695 Uncharacterised protein family (UPF0149) CYK57_00203 PF01208 Uroporphyrinogen decarboxylase (URO-D) CYK57_00204 PF04222 Protein of unknown function (DUF416) CYK57_00205 PF00216 Bacterial DNA-binding protein CYK57_00206 PF00303 Thymidylate synthase CYK57_00208 PF06968 Biotin and Thiamin Synthesis associated domain CYK57_00208 PF04055 Radical SAM superfamily CYK57_00209 PF00313 'Cold-shock' DNA-binding domain CYK57_00210 PF04352 ProQ/FINO family CYK57_00211 PF11818 C-terminal domain of tail specific protease (DUF3340) CYK57_00211 PF17804 Tail specific protease N-terminal domain CYK57_00211 PF00595 PDZ domain CYK57_00211 PF03572 Peptidase family S41 CYK57_00212 PF03734 L,D-transpeptidase catalytic domain CYK57_00213 PF05951 Bacterial protein of unknown function (DUF882) CYK57_00214 PF00753 Metallo-beta-lactamase superfamily CYK57_00217 PF01230 HIT domain CYK57_00218 PF00950 ABC 3 transport family CYK57_00219 PF00950 ABC 3 transport family CYK57_00220 PF01351 Ribonuclease HII CYK57_00221 PF03193 RsgA GTPase CYK57_00222 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_00222 PF03466 LysR substrate binding domain CYK57_00223 PF13419 Haloacid dehalogenase-like hydrolase CYK57_00224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_00224 PF03466 LysR substrate binding domain CYK57_00226 PF00710 Asparaginase, N-terminal CYK57_00226 PF17763 Glutaminase/Asparaginase C-terminal domain CYK57_00227 PF00117 Glutamine amidotransferase class-I CYK57_00227 PF06418 CTP synthase N-terminus CYK57_00228 PF10063 Uncharacterized integral membrane protein (DUF2301) CYK57_00229 PF00694 Aconitase C-terminal domain CYK57_00230 PF00330 Aconitase family (aconitate hydratase) CYK57_00231 PF05651 Putative sugar diacid recognition CYK57_00231 PF17853 GGDEF-like domain CYK57_00231 PF13556 PucR C-terminal helix-turn-helix domain CYK57_00232 PF02447 GntP family permease CYK57_00233 PF02595 Glycerate kinase family CYK57_00234 PF00708 Acylphosphatase CYK57_00235 PF11398 Protein of unknown function (DUF2813) CYK57_00236 PF11892 Domain of unknown function (DUF3412) CYK57_00236 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CYK57_00236 PF03641 Possible lysine decarboxylase CYK57_00237 PF01207 Dihydrouridine synthase (Dus) CYK57_00239 PF03477 ATP cone domain CYK57_00239 PF00317 Ribonucleotide reductase, all-alpha domain CYK57_00239 PF02867 Ribonucleotide reductase, barrel domain CYK57_00240 PF01106 NifU-like domain CYK57_00240 PF01521 Iron-sulphur cluster biosynthesis CYK57_00241 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CYK57_00241 PF11973 NQRA C-terminal domain CYK57_00242 PF03116 NQR2, RnfD, RnfE family CYK57_00243 PF04205 FMN-binding domain CYK57_00244 PF02508 Rnf-Nqr subunit, membrane protein CYK57_00245 PF02508 Rnf-Nqr subunit, membrane protein CYK57_00246 PF00970 Oxidoreductase FAD-binding domain CYK57_00246 PF00111 2Fe-2S iron-sulfur cluster binding domain CYK57_00246 PF00175 Oxidoreductase NAD-binding domain CYK57_00247 PF02424 ApbE family CYK57_00248 PF04400 (Na+)-NQR maturation NqrM CYK57_00250 PF12832 MFS_1 like family CYK57_00251 PF03807 NADP oxidoreductase coenzyme F420-dependent CYK57_00251 PF14748 Pyrroline-5-carboxylate reductase dimerisation CYK57_00252 PF04381 Putative exonuclease, RdgC CYK57_00253 PF13419 Haloacid dehalogenase-like hydrolase CYK57_00256 PF02508 Rnf-Nqr subunit, membrane protein CYK57_00257 PF04060 Putative Fe-S cluster CYK57_00258 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CYK57_00258 PF12838 4Fe-4S dicluster domain CYK57_00258 PF13375 RnfC Barrel sandwich hybrid domain CYK57_00259 PF03458 UPF0126 domain CYK57_00260 PF03116 NQR2, RnfD, RnfE family CYK57_00261 PF04205 FMN-binding domain CYK57_00262 PF02508 Rnf-Nqr subunit, membrane protein CYK57_00263 PF03279 Bacterial lipid A biosynthesis acyltransferase CYK57_00266 PF01258 Prokaryotic dksA/traR C4-type zinc finger CYK57_00267 PF01743 Poly A polymerase head domain CYK57_00267 PF12626 Polymerase A arginine-rich C-terminus CYK57_00267 PF12627 Probable RNA and SrmB- binding site of polymerase A CYK57_00268 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CYK57_00270 PF11739 Dicarboxylate transport CYK57_00272 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYK57_00273 PF00929 Exonuclease CYK57_00275 PF02153 Prephenate dehydrogenase CYK57_00275 PF01817 Chorismate mutase type II CYK57_00276 PF00793 DAHP synthetase I family CYK57_00277 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CYK57_00278 PF02887 Pyruvate kinase, alpha/beta domain CYK57_00278 PF00224 Pyruvate kinase, barrel domain CYK57_00279 PF00300 Histidine phosphatase superfamily (branch 1) CYK57_00280 PF01207 Dihydrouridine synthase (Dus) CYK57_00281 PF02954 Bacterial regulatory protein, Fis family CYK57_00282 PF00209 Sodium:neurotransmitter symporter family CYK57_00283 PF02086 D12 class N6 adenine-specific DNA methyltransferase CYK57_00284 PF01761 3-dehydroquinate synthase CYK57_00285 PF01202 Shikimate kinase CYK57_00287 PF17092 Penicillin-binding protein OB-like domain CYK57_00287 PF00912 Transglycosylase CYK57_00287 PF00905 Penicillin binding protein transpeptidase domain CYK57_00288 PF11104 Type IV pilus assembly protein PilM; CYK57_00292 PF00263 Bacterial type II and III secretion system protein CYK57_00292 PF03958 Bacterial type II/III secretion system short domain CYK57_00293 PF01029 NusB family CYK57_00294 PF00586 AIR synthase related protein, N-terminal domain CYK57_00294 PF02769 AIR synthase related protein, C-terminal domain CYK57_00295 PF04608 Phosphatidylglycerophosphatase A CYK57_00296 PF01810 LysE type translocator CYK57_00297 PF00588 SpoU rRNA Methylase family CYK57_00297 PF08032 RNA 2'-O ribose methyltransferase substrate binding CYK57_00298 PF00459 Inositol monophosphatase family CYK57_00299 PF02780 Transketolase, C-terminal domain CYK57_00299 PF02779 Transketolase, pyrimidine binding domain CYK57_00299 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CYK57_00300 PF00665 Integrase core domain CYK57_00300 PF13333 Integrase core domain CYK57_00301 PF13333 Integrase core domain CYK57_00301 PF13276 HTH-like domain CYK57_00301 PF00665 Integrase core domain CYK57_00304 PF00464 Serine hydroxymethyltransferase CYK57_00305 PF01513 ATP-NAD kinase CYK57_00306 PF18019 HD domain CYK57_00307 PF01867 CRISPR associated protein Cas1 CYK57_00308 PF01867 CRISPR associated protein Cas1 CYK57_00310 PF09615 CRISPR-associated protein (Cas_Csy3) CYK57_00311 PF09614 CRISPR-associated protein (Cas_Csy2) CYK57_00314 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYK57_00314 PF02824 TGS domain CYK57_00314 PF03129 Anticodon binding domain CYK57_00314 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYK57_00315 PF03783 Curli production assembly/transport component CsgG CYK57_00317 PF05643 Putative bacterial lipoprotein (DUF799) CYK57_00318 PF00707 Translation initiation factor IF-3, C-terminal domain CYK57_00318 PF05198 Translation initiation factor IF-3, N-terminal domain CYK57_00319 PF01632 Ribosomal protein L35 CYK57_00320 PF00453 Ribosomal protein L20 CYK57_00323 PF03471 Transporter associated domain CYK57_00323 PF01595 Cyclin M transmembrane N-terminal domain CYK57_00323 PF00571 CBS domain CYK57_00324 PF00849 RNA pseudouridylate synthase CYK57_00325 PF00300 Histidine phosphatase superfamily (branch 1) CYK57_00326 PF03652 Holliday junction resolvase CYK57_00327 PF02622 Uncharacterized ACR, COG1678 CYK57_00328 PF04452 RNA methyltransferase CYK57_00330 PF01722 BolA-like protein CYK57_00335 PF07517 SecA DEAD-like domain CYK57_00335 PF02810 SEC-C motif CYK57_00335 PF07516 SecA Wing and Scaffold domain CYK57_00335 PF01043 SecA preprotein cross-linking domain CYK57_00337 PF00293 NUDIX domain CYK57_00338 PF01118 Semialdehyde dehydrogenase, NAD binding domain CYK57_00339 PF00696 Amino acid kinase family CYK57_00340 PF00202 Aminotransferase class-III CYK57_00341 PF17484 N-Lobe handle Tf-binding protein B CYK57_00341 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B CYK57_00341 PF17483 C-lobe handle domain of Tf-binding protein B CYK57_00342 PF07715 TonB-dependent Receptor Plug Domain CYK57_00342 PF00593 TonB dependent receptor CYK57_00343 PF00593 TonB dependent receptor CYK57_00343 PF07715 TonB-dependent Receptor Plug Domain CYK57_00344 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYK57_00344 PF07498 Rho termination factor, N-terminal domain CYK57_00344 PF07497 Rho termination factor, RNA-binding domain CYK57_00346 PF00291 Pyridoxal-phosphate dependent enzyme CYK57_00347 PF08544 GHMP kinases C terminal CYK57_00347 PF00288 GHMP kinases N terminal domain CYK57_00348 PF13840 ACT domain CYK57_00348 PF01842 ACT domain CYK57_00348 PF03447 Homoserine dehydrogenase, NAD binding domain CYK57_00348 PF00742 Homoserine dehydrogenase CYK57_00348 PF00696 Amino acid kinase family CYK57_00349 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CYK57_00349 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CYK57_00350 PF01168 Alanine racemase, N-terminal domain CYK57_00350 PF00842 Alanine racemase, C-terminal domain CYK57_00351 PF13538 UvrD-like helicase C-terminal domain CYK57_00356 PF01546 Peptidase family M20/M25/M40 CYK57_00356 PF07687 Peptidase dimerisation domain CYK57_00357 PF00156 Phosphoribosyl transferase domain CYK57_00358 PF00625 Guanylate kinase CYK57_00359 PF02321 Outer membrane efflux protein CYK57_00360 PF03658 RnfH family Ubiquitin CYK57_00361 PF03364 Polyketide cyclase / dehydrase and lipid transport CYK57_00362 PF00005 ABC transporter CYK57_00362 PF03459 TOBE domain CYK57_00363 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00365 PF01061 ABC-2 type transporter CYK57_00366 PF00005 ABC transporter CYK57_00367 PF12169 DNA polymerase III subunits gamma and tau domain III CYK57_00367 PF12170 DNA polymerase III tau subunit V interacting with alpha CYK57_00368 PF00156 Phosphoribosyl transferase domain CYK57_00370 PF01042 Endoribonuclease L-PSP CYK57_00371 PF00291 Pyridoxal-phosphate dependent enzyme CYK57_00372 PF04073 Aminoacyl-tRNA editing domain CYK57_00373 PF00005 ABC transporter CYK57_00374 PF01297 Zinc-uptake complex component A periplasmic CYK57_00375 PF04358 DsrC like protein CYK57_00376 PF01027 Inhibitor of apoptosis-promoting Bax1 CYK57_00377 PF01066 CDP-alcohol phosphatidyltransferase CYK57_00379 PF01541 GIY-YIG catalytic domain CYK57_00379 PF02151 UvrB/uvrC motif CYK57_00379 PF08459 UvrC Helix-hairpin-helix N-terminal CYK57_00381 PF01026 TatD related DNase CYK57_00382 PF00580 UvrD/REP helicase N-terminal domain CYK57_00382 PF13361 UvrD-like helicase C-terminal domain CYK57_00383 PF08402 TOBE domain CYK57_00383 PF00005 ABC transporter CYK57_00384 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00385 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00386 PF07499 RuvA, C-terminal domain CYK57_00386 PF01330 RuvA N terminal domain CYK57_00387 PF17864 RuvB AAA lid domain CYK57_00387 PF05491 RuvB C-terminal winged helix domain CYK57_00387 PF05496 Holliday junction DNA helicase RuvB P-loop domain CYK57_00389 PF00521 DNA gyrase/topoisomerase IV, subunit A CYK57_00389 PF03989 DNA gyrase C-terminal domain, beta-propeller CYK57_00390 PF12161 HsdM N-terminal domain CYK57_00390 PF02384 N-6 DNA Methylase CYK57_00391 PF12161 HsdM N-terminal domain CYK57_00391 PF02384 N-6 DNA Methylase CYK57_00393 PF01420 Type I restriction modification DNA specificity domain CYK57_00396 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CYK57_00396 PF12008 Type I restriction and modification enzyme - subunit R C terminal CYK57_00396 PF18766 SWI2/SNF2 ATPase CYK57_00397 PF00005 ABC transporter CYK57_00397 PF12848 ABC transporter CYK57_00397 PF16326 ABC transporter C-terminal domain CYK57_00398 PF00899 ThiF family CYK57_00399 PF17274 Family of unknown function (DUF5339) CYK57_00400 PF01654 Cytochrome bd terminal oxidase subunit I CYK57_00401 PF02322 Cytochrome bd terminal oxidase subunit II CYK57_00402 PF03061 Thioesterase superfamily CYK57_00403 PF01618 MotA/TolQ/ExbB proton channel family CYK57_00404 PF02472 Biopolymer transport protein ExbD/TolR CYK57_00405 PF06519 TolA C-terminal CYK57_00406 PF04052 TolB amino-terminal domain CYK57_00406 PF07676 WD40-like Beta Propeller Repeat CYK57_00407 PF00691 OmpA family CYK57_00409 PF00226 DnaJ domain CYK57_00409 PF05099 Tellurite resistance protein TerB CYK57_00410 PF01207 Dihydrouridine synthase (Dus) CYK57_00411 PF05128 Domain of unknown function (DUF697) CYK57_00412 PF12848 ABC transporter CYK57_00412 PF00005 ABC transporter CYK57_00414 PF00994 Probable molybdopterin binding domain CYK57_00414 PF03454 MoeA C-terminal region (domain IV) CYK57_00414 PF03453 MoeA N-terminal region (domain I and II) CYK57_00415 PF00899 ThiF family CYK57_00417 PF01938 TRAM domain CYK57_00417 PF05958 tRNA (Uracil-5-)-methyltransferase CYK57_00418 PF01966 HD domain CYK57_00418 PF13286 Phosphohydrolase-associated domain CYK57_00420 PF00271 Helicase conserved C-terminal domain CYK57_00420 PF12137 RNA polymerase recycling family C-terminal CYK57_00420 PF00176 SNF2 family N-terminal domain CYK57_00420 PF18339 RapA N-terminal Tudor like domain 1 CYK57_00420 PF18337 RapA N-terminal Tudor like domain CYK57_00421 PF00849 RNA pseudouridylate synthase CYK57_00422 PF01510 N-acetylmuramoyl-L-alanine amidase CYK57_00423 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CYK57_00424 PF00156 Phosphoribosyl transferase domain CYK57_00425 PF01717 Cobalamin-independent synthase, Catalytic domain CYK57_00426 PF01053 Cys/Met metabolism PLP-dependent enzyme CYK57_00427 PF02600 Disulfide bond formation protein DsbB CYK57_00428 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CYK57_00429 PF07840 FadR C-terminal domain CYK57_00429 PF00392 Bacterial regulatory proteins, gntR family CYK57_00430 PF02562 PhoH-like protein CYK57_00432 PF03462 PCRF domain CYK57_00432 PF00472 RF-1 domain CYK57_00434 PF00586 AIR synthase related protein, N-terminal domain CYK57_00434 PF02769 AIR synthase related protein, C-terminal domain CYK57_00435 PF00293 NUDIX domain CYK57_00436 PF01494 FAD binding domain CYK57_00440 PF01494 FAD binding domain CYK57_00441 PF03668 P-loop ATPase protein family CYK57_00442 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CYK57_00443 PF12399 Branched-chain amino acid ATP-binding cassette transporter CYK57_00443 PF00005 ABC transporter CYK57_00444 PF03968 OstA-like protein CYK57_00446 PF00311 Phosphoenolpyruvate carboxylase CYK57_00447 PF04536 TPM domain CYK57_00449 PF04011 LemA family CYK57_00450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CYK57_00451 PF00294 pfkB family carbohydrate kinase CYK57_00452 PF00381 PTS HPr component phosphorylation site CYK57_00452 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CYK57_00453 PF00128 Alpha amylase, catalytic domain CYK57_00453 PF02806 Alpha amylase, C-terminal all-beta domain CYK57_00453 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CYK57_00454 PF00128 Alpha amylase, catalytic domain CYK57_00454 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CYK57_00454 PF18390 Glycogen debranching enzyme C-terminal domain CYK57_00455 PF00483 Nucleotidyl transferase CYK57_00456 PF08323 Starch synthase catalytic domain CYK57_00456 PF00534 Glycosyl transferases group 1 CYK57_00457 PF00343 Carbohydrate phosphorylase CYK57_00458 PF00334 Nucleoside diphosphate kinase CYK57_00459 PF08264 Anticodon-binding domain of tRNA CYK57_00459 PF09334 tRNA synthetases class I (M) CYK57_00459 PF01588 Putative tRNA binding domain CYK57_00460 PF13378 Enolase C-terminal domain-like CYK57_00462 PF00849 RNA pseudouridylate synthase CYK57_00462 PF01479 S4 domain CYK57_00463 PF07690 Major Facilitator Superfamily CYK57_00466 PF01261 Xylose isomerase-like TIM barrel CYK57_00467 PF00877 NlpC/P60 family CYK57_00468 PF00717 Peptidase S24-like CYK57_00469 PF01228 Glycine radical CYK57_00470 PF03167 Uracil DNA glycosylase superfamily CYK57_00471 PF04393 Protein of unknown function (DUF535) CYK57_00472 PF00082 Subtilase family CYK57_00472 PF03797 Autotransporter beta-domain CYK57_00473 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CYK57_00473 PF00271 Helicase conserved C-terminal domain CYK57_00473 PF11898 Domain of unknown function (DUF3418) CYK57_00473 PF00270 DEAD/DEAH box helicase CYK57_00473 PF04408 Helicase associated domain (HA2) CYK57_00475 PF04284 Protein of unknown function (DUF441) CYK57_00476 PF01025 GrpE CYK57_00477 PF13416 Bacterial extracellular solute-binding protein CYK57_00478 PF01554 MatE CYK57_00479 PF12705 PD-(D/E)XK nuclease superfamily CYK57_00479 PF00580 UvrD/REP helicase N-terminal domain CYK57_00479 PF13361 UvrD-like helicase C-terminal domain CYK57_00480 PF00795 Carbon-nitrogen hydrolase CYK57_00481 PF00571 CBS domain CYK57_00481 PF03471 Transporter associated domain CYK57_00482 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CYK57_00484 PF00230 Major intrinsic protein CYK57_00485 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYK57_00485 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYK57_00486 PF00004 ATPase family associated with various cellular activities (AAA) CYK57_00486 PF02190 ATP-dependent protease La (LON) substrate-binding domain CYK57_00486 PF05362 Lon protease (S16) C-terminal proteolytic domain CYK57_00487 PF07690 Major Facilitator Superfamily CYK57_00488 PF03009 Glycerophosphoryl diester phosphodiesterase family CYK57_00489 PF01266 FAD dependent oxidoreductase CYK57_00489 PF04324 BFD-like [2Fe-2S] binding domain CYK57_00490 PF00890 FAD binding domain CYK57_00491 PF02754 Cysteine-rich domain CYK57_00491 PF13183 4Fe-4S dicluster domain CYK57_00493 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CYK57_00493 PF01872 RibD C-terminal domain CYK57_00494 PF00677 Lumazine binding domain CYK57_00495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CYK57_00495 PF00925 GTP cyclohydrolase II CYK57_00496 PF00885 6,7-dimethyl-8-ribityllumazine synthase CYK57_00497 PF03449 Transcription elongation factor, N-terminal CYK57_00497 PF01272 Transcription elongation factor, GreA/GreB, C-term CYK57_00498 PF00571 CBS domain CYK57_00498 PF01380 SIS domain CYK57_00499 PF12404 Peptidase CYK57_00499 PF00883 Cytosol aminopeptidase family, catalytic domain CYK57_00500 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CYK57_00501 PF01758 Sodium Bile acid symporter family CYK57_00502 PF13533 Biotin-lipoyl like CYK57_00504 PF00682 HMGL-like CYK57_00504 PF08502 LeuA allosteric (dimerisation) domain CYK57_00505 PF04542 Sigma-70 region 2 CYK57_00505 PF08281 Sigma-70, region 4 CYK57_00506 PF03873 Anti sigma-E protein RseA, C-terminal domain CYK57_00506 PF03872 Anti sigma-E protein RseA, N-terminal domain CYK57_00508 PF00501 AMP-binding enzyme CYK57_00508 PF13193 AMP-binding enzyme C-terminal domain CYK57_00510 PF00398 Ribosomal RNA adenine dimethylase CYK57_00511 PF00639 PPIC-type PPIASE domain CYK57_00511 PF09312 SurA N-terminal domain CYK57_00512 PF00156 Phosphoribosyl transferase domain CYK57_00513 PF00294 pfkB family carbohydrate kinase CYK57_00513 PF01467 Cytidylyltransferase-like CYK57_00514 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CYK57_00514 PF01926 50S ribosome-binding GTPase CYK57_00516 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CYK57_00516 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CYK57_00516 PF01488 Shikimate / quinate 5-dehydrogenase CYK57_00517 PF13291 ACT domain CYK57_00517 PF04607 Region found in RelA / SpoT proteins CYK57_00517 PF02824 TGS domain CYK57_00518 PF13288 DXP reductoisomerase C-terminal domain CYK57_00518 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CYK57_00518 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CYK57_00519 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CYK57_00519 PF00132 Bacterial transferase hexapeptide (six repeats) CYK57_00520 PF07977 FabA-like domain CYK57_00521 PF00132 Bacterial transferase hexapeptide (six repeats) CYK57_00521 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CYK57_00523 PF07244 Surface antigen variable number repeat CYK57_00523 PF01103 Surface antigen CYK57_00524 PF02163 Peptidase family M50 CYK57_00526 PF01255 Putative undecaprenyl diphosphate synthase CYK57_00527 PF16123 Hydroxyacylglutathione hydrolase C-terminus CYK57_00527 PF00753 Metallo-beta-lactamase superfamily CYK57_00528 PF00480 ROK family CYK57_00529 PF01569 PAP2 superfamily CYK57_00530 PF01985 CRS1 / YhbY (CRM) domain CYK57_00531 PF00535 Glycosyl transferase family 2 CYK57_00532 PF00768 D-alanyl-D-alanine carboxypeptidase CYK57_00533 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CYK57_00534 PF00764 Arginosuccinate synthase CYK57_00535 PF00075 RNase H CYK57_00536 PF02674 Colicin V production protein CYK57_00537 PF00156 Phosphoribosyl transferase domain CYK57_00539 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CYK57_00539 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CYK57_00540 PF04355 SmpA / OmlA family CYK57_00541 PF04245 37-kD nucleoid-associated bacterial protein CYK57_00542 PF01042 Endoribonuclease L-PSP CYK57_00543 PF02578 Multi-copper polyphenol oxidoreductase laccase CYK57_00545 PF07119 Protein of unknown function (DUF1375) CYK57_00546 PF00180 Isocitrate/isopropylmalate dehydrogenase CYK57_00547 PF01641 SelR domain CYK57_00548 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CYK57_00548 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CYK57_00551 PF04085 rod shape-determining protein MreC CYK57_00552 PF04093 rod shape-determining protein MreD CYK57_00553 PF12002 MgsA AAA+ ATPase C terminal CYK57_00553 PF16193 AAA C-terminal domain CYK57_00553 PF00004 ATPase family associated with various cellular activities (AAA) CYK57_00554 PF00950 ABC 3 transport family CYK57_00555 PF13230 Glutamine amidotransferases class-II CYK57_00556 PF00561 alpha/beta hydrolase fold CYK57_00557 PF02698 DUF218 domain CYK57_00559 PF05662 Coiled stalk of trimeric autotransporter adhesin CYK57_00559 PF13018 Extended Signal Peptide of Type V secretion system CYK57_00559 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin CYK57_00559 PF03895 YadA-like membrane anchor domain CYK57_00560 PF02589 LUD domain CYK57_00561 PF13183 4Fe-4S dicluster domain CYK57_00561 PF02589 LUD domain CYK57_00561 PF11870 Domain of unknown function (DUF3390) CYK57_00562 PF02754 Cysteine-rich domain CYK57_00563 PF02652 L-lactate permease CYK57_00564 PF00816 H-NS histone family CYK57_00565 PF03553 Na+/H+ antiporter family CYK57_00566 PF13407 Periplasmic binding protein domain CYK57_00567 PF00549 CoA-ligase CYK57_00567 PF02629 CoA binding domain CYK57_00568 PF08442 ATP-grasp domain CYK57_00568 PF00549 CoA-ligase CYK57_00569 PF04393 Protein of unknown function (DUF535) CYK57_00570 PF00364 Biotin-requiring enzyme CYK57_00570 PF02817 e3 binding domain CYK57_00570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CYK57_00571 PF16078 2-oxoglutarate dehydrogenase N-terminus CYK57_00571 PF00676 Dehydrogenase E1 component CYK57_00571 PF16870 2-oxoglutarate dehydrogenase C-terminal CYK57_00571 PF02779 Transketolase, pyrimidine binding domain CYK57_00572 PF00005 ABC transporter CYK57_00573 PF01551 Peptidase family M23 CYK57_00573 PF04225 Opacity-associated protein A LysM-like domain CYK57_00574 PF13098 Thioredoxin-like domain CYK57_00574 PF10411 Disulfide bond isomerase protein N-terminus CYK57_00576 PF02272 DHHA1 domain CYK57_00576 PF17768 RecJ OB domain CYK57_00576 PF01368 DHH family CYK57_00577 PF00691 OmpA family CYK57_00577 PF01389 OmpA-like transmembrane domain CYK57_00579 PF00672 HAMP domain CYK57_00579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYK57_00579 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CYK57_00579 PF07730 Histidine kinase CYK57_00581 PF01725 Ham1 family CYK57_00582 PF01906 Putative heavy-metal-binding CYK57_00583 PF01268 Formate--tetrahydrofolate ligase CYK57_00584 PF03692 Putative zinc- or iron-chelating domain CYK57_00585 PF00106 short chain dehydrogenase CYK57_00586 PF00291 Pyridoxal-phosphate dependent enzyme CYK57_00587 PF00290 Tryptophan synthase alpha chain CYK57_00588 PF12441 CopG antitoxin of type II toxin-antitoxin system CYK57_00590 PF01367 5'-3' exonuclease, C-terminal SAM fold CYK57_00590 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CYK57_00590 PF01612 3'-5' exonuclease CYK57_00590 PF00476 DNA polymerase family A CYK57_00593 PF03548 Outer membrane lipoprotein carrier protein LolA CYK57_00594 PF01371 Trp repressor protein CYK57_00595 PF00912 Transglycosylase CYK57_00596 PF02627 Carboxymuconolactone decarboxylase family CYK57_00602 PF00881 Nitroreductase family CYK57_00603 PF18030 RimK PreATP-grasp domain CYK57_00603 PF08443 RimK-like ATP-grasp domain CYK57_00604 PF02698 DUF218 domain CYK57_00605 PF03949 Malic enzyme, NAD binding domain CYK57_00605 PF01515 Phosphate acetyl/butaryl transferase CYK57_00605 PF00390 Malic enzyme, N-terminal domain CYK57_00606 PF01386 Ribosomal L25p family CYK57_00615 PF04381 Putative exonuclease, RdgC CYK57_00617 PF03837 RecT family CYK57_00629 PF03796 DnaB-like helicase C terminal domain CYK57_00629 PF00772 DnaB-like helicase N terminal domain CYK57_00636 PF00959 Phage lysozyme CYK57_00642 PF00574 Clp protease CYK57_00658 PF06226 Protein of unknown function (DUF1007) CYK57_00659 PF03824 High-affinity nickel-transport protein CYK57_00660 PF01235 Sodium:alanine symporter family CYK57_00661 PF00005 ABC transporter CYK57_00662 PF00005 ABC transporter CYK57_00663 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00664 PF00899 ThiF family CYK57_00665 PF00899 ThiF family CYK57_00666 PF02597 ThiS family CYK57_00667 PF05690 Thiazole biosynthesis protein ThiG CYK57_00668 PF05690 Thiazole biosynthesis protein ThiG CYK57_00669 PF04055 Radical SAM superfamily CYK57_00669 PF06968 Biotin and Thiamin Synthesis associated domain CYK57_00670 PF03070 TENA/THI-4/PQQC family CYK57_00671 PF09084 NMT1/THI5 like CYK57_00672 PF08543 Phosphomethylpyrimidine kinase CYK57_00673 PF08543 Phosphomethylpyrimidine kinase CYK57_00674 PF02581 Thiamine monophosphate synthase CYK57_00676 PF06421 GTP-binding protein LepA C-terminus CYK57_00676 PF03144 Elongation factor Tu domain 2 CYK57_00676 PF00679 Elongation factor G C-terminus CYK57_00676 PF00009 Elongation factor Tu GTP binding domain CYK57_00678 PF10502 Signal peptidase, peptidase S26 CYK57_00679 PF00035 Double-stranded RNA binding motif CYK57_00679 PF14622 Ribonuclease-III-like CYK57_00680 PF07650 KH domain CYK57_00680 PF01926 50S ribosome-binding GTPase CYK57_00681 PF02565 Recombination protein O C terminal CYK57_00681 PF11967 Recombination protein O N terminal CYK57_00688 PF00437 Type II/IV secretion system protein CYK57_00691 PF00263 Bacterial type II and III secretion system protein CYK57_00691 PF03958 Bacterial type II/III secretion system short domain CYK57_00695 PF00270 DEAD/DEAH box helicase CYK57_00695 PF00271 Helicase conserved C-terminal domain CYK57_00697 PF05872 Bacterial protein of unknown function (DUF853) CYK57_00699 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00700 PF00005 ABC transporter CYK57_00700 PF06472 ABC transporter transmembrane region 2 CYK57_00701 PF00318 Ribosomal protein S2 CYK57_00702 PF00889 Elongation factor TS CYK57_00703 PF00884 Sulfatase CYK57_00704 PF00696 Amino acid kinase family CYK57_00706 PF01765 Ribosome recycling factor CYK57_00707 PF00392 Bacterial regulatory proteins, gntR family CYK57_00707 PF00155 Aminotransferase class I and II CYK57_00708 PF01680 SOR/SNZ family CYK57_00709 PF01174 SNO glutamine amidotransferase family CYK57_00710 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CYK57_00711 PF00270 DEAD/DEAH box helicase CYK57_00711 PF03880 DbpA RNA binding domain CYK57_00711 PF00271 Helicase conserved C-terminal domain CYK57_00713 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CYK57_00713 PF01138 3' exoribonuclease family, domain 1 CYK57_00713 PF03725 3' exoribonuclease family, domain 2 CYK57_00713 PF00575 S1 RNA binding domain CYK57_00713 PF00013 KH domain CYK57_00714 PF03989 DNA gyrase C-terminal domain, beta-propeller CYK57_00714 PF00521 DNA gyrase/topoisomerase IV, subunit A CYK57_00715 PF03882 MukF winged-helix domain CYK57_00715 PF17193 MukF C-terminal domain CYK57_00715 PF17192 MukF middle domain CYK57_00716 PF04288 MukE-like family CYK57_00717 PF04310 MukB N-terminal CYK57_00717 PF16330 MukB hinge domain CYK57_00718 PF07690 Major Facilitator Superfamily CYK57_00719 PF00884 Sulfatase CYK57_00719 PF11893 Domain of unknown function (DUF3413) CYK57_00720 PF07208 Protein of unknown function (DUF1414) CYK57_00721 PF00440 Bacterial regulatory proteins, tetR family CYK57_00722 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CYK57_00723 PF00873 AcrB/AcrD/AcrF family CYK57_00724 PF00132 Bacterial transferase hexapeptide (six repeats) CYK57_00724 PF12804 MobA-like NTP transferase domain CYK57_00726 PF08942 Domain of unknown function (DUF1919) CYK57_00727 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CYK57_00727 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CYK57_00727 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CYK57_00727 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CYK57_00728 PF00958 GMP synthase C terminal domain CYK57_00728 PF00117 Glutamine amidotransferase class-I CYK57_00728 PF02540 NAD synthase CYK57_00730 PF00571 CBS domain CYK57_00730 PF00478 IMP dehydrogenase / GMP reductase domain CYK57_00731 PF01728 FtsJ-like methyltransferase CYK57_00732 PF00004 ATPase family associated with various cellular activities (AAA) CYK57_00732 PF17862 AAA+ lid domain CYK57_00732 PF06480 FtsH Extracellular CYK57_00732 PF01434 Peptidase family M41 CYK57_00733 PF03222 Tryptophan/tyrosine permease family CYK57_00734 PF03222 Tryptophan/tyrosine permease family CYK57_00735 PF08335 GlnD PII-uridylyltransferase CYK57_00735 PF01966 HD domain CYK57_00736 PF06295 Protein of unknown function (DUF1043) CYK57_00737 PF00572 Ribosomal protein L13 CYK57_00738 PF00380 Ribosomal protein S9/S16 CYK57_00739 PF03883 Peroxide stress protein YaaA CYK57_00741 PF16916 Dimerisation domain of Zinc Transporter CYK57_00741 PF01545 Cation efflux family CYK57_00742 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) CYK57_00743 PF00375 Sodium:dicarboxylate symporter family CYK57_00744 PF00881 Nitroreductase family CYK57_00745 PF01409 tRNA synthetases class II core domain (F) CYK57_00745 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CYK57_00746 PF03483 B3/4 domain CYK57_00746 PF03484 tRNA synthetase B5 domain CYK57_00746 PF03147 Ferredoxin-fold anticodon binding domain CYK57_00746 PF01588 Putative tRNA binding domain CYK57_00746 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CYK57_00747 PF00216 Bacterial DNA-binding protein CYK57_00748 PF00877 NlpC/P60 family CYK57_00749 PF00665 Integrase core domain CYK57_00749 PF13333 Integrase core domain CYK57_00752 PF01047 MarR family CYK57_00752 PF00480 ROK family CYK57_00753 PF00570 HRDC domain CYK57_00753 PF01612 3'-5' exonuclease CYK57_00754 PF01037 Lrp/AsnC ligand binding domain CYK57_00755 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CYK57_00755 PF01580 FtsK/SpoIIIE family CYK57_00755 PF09397 Ftsk gamma domain CYK57_00755 PF17854 FtsK alpha domain CYK57_00756 PF04228 Putative neutral zinc metallopeptidase CYK57_00757 PF00793 DAHP synthetase I family CYK57_00758 PF00814 Glycoprotease family CYK57_00759 PF00265 Thymidine kinase CYK57_00760 PF06005 Cell division protein ZapB CYK57_00761 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CYK57_00762 PF01784 NIF3 (NGG1p interacting factor 3) CYK57_00763 PF12704 MacB-like periplasmic core domain CYK57_00763 PF02687 FtsX-like permease family CYK57_00763 PF00005 ABC transporter CYK57_00764 PF00672 HAMP domain CYK57_00764 PF00512 His Kinase A (phospho-acceptor) domain CYK57_00764 PF16527 Two-component sensor protein CpxA, periplasmic domain CYK57_00764 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYK57_00765 PF00486 Transcriptional regulatory protein, C terminal CYK57_00765 PF00072 Response regulator receiver domain CYK57_00766 PF03819 MazG nucleotide pyrophosphohydrolase domain CYK57_00767 PF17848 Acetyl-coA carboxylase zinc finger domain CYK57_00767 PF01039 Carboxyl transferase domain CYK57_00768 PF08245 Mur ligase middle domain CYK57_00769 PF02384 N-6 DNA Methylase CYK57_00770 PF01420 Type I restriction modification DNA specificity domain CYK57_00772 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CYK57_00772 PF11867 Domain of unknown function (DUF3387) CYK57_00772 PF18766 SWI2/SNF2 ATPase CYK57_00774 PF02576 RimP N-terminal domain CYK57_00774 PF17384 RimP C-terminal SH3 domain CYK57_00775 PF13184 NusA-like KH domain CYK57_00775 PF00575 S1 RNA binding domain CYK57_00775 PF08529 NusA N-terminal domain CYK57_00776 PF00009 Elongation factor Tu GTP binding domain CYK57_00776 PF11987 Translation-initiation factor 2 CYK57_00776 PF04760 Translation initiation factor IF-2, N-terminal region CYK57_00777 PF02033 Ribosome-binding factor A CYK57_00778 PF09157 Pseudouridine synthase II TruB, C-terminal CYK57_00778 PF16198 tRNA pseudouridylate synthase B C-terminal domain CYK57_00778 PF01509 TruB family pseudouridylate synthase (N terminal domain) CYK57_00779 PF13406 Transglycosylase SLT domain CYK57_00780 PF07411 Domain of unknown function (DUF1508) CYK57_00781 PF07085 DRTGG domain CYK57_00781 PF01515 Phosphate acetyl/butaryl transferase CYK57_00782 PF00871 Acetokinase family CYK57_00783 PF00149 Calcineurin-like phosphoesterase CYK57_00783 PF02872 5'-nucleotidase, C-terminal domain CYK57_00786 PF13609 Gram-negative porin CYK57_00788 PF00483 Nucleotidyl transferase CYK57_00789 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CYK57_00789 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CYK57_00789 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CYK57_00789 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CYK57_00790 PF02599 Global regulator protein family CYK57_00791 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CYK57_00791 PF02272 DHHA1 domain CYK57_00791 PF01411 tRNA synthetases class II (A) CYK57_00792 PF00582 Universal stress protein family CYK57_00793 PF00027 Cyclic nucleotide-binding domain CYK57_00793 PF00325 Bacterial regulatory proteins, crp family CYK57_00794 PF04386 Stringent starvation protein B CYK57_00795 PF00043 Glutathione S-transferase, C-terminal domain CYK57_00795 PF02798 Glutathione S-transferase, N-terminal domain CYK57_00796 PF00731 AIR carboxylase CYK57_00797 PF00710 Asparaginase, N-terminal CYK57_00797 PF17763 Glutaminase/Asparaginase C-terminal domain CYK57_00798 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CYK57_00798 PF02222 ATP-grasp domain CYK57_00799 PF00155 Aminotransferase class I and II CYK57_00800 PF00557 Metallopeptidase family M24 CYK57_00800 PF05195 Aminopeptidase P, N-terminal domain CYK57_00801 PF13635 Domain of unknown function (DUF4143) CYK57_00801 PF13173 AAA domain CYK57_00802 PF01850 PIN domain CYK57_00804 PF17757 UvrB interaction domain CYK57_00804 PF12344 Ultra-violet resistance protein B CYK57_00804 PF02151 UvrB/uvrC motif CYK57_00804 PF04851 Type III restriction enzyme, res subunit CYK57_00804 PF00271 Helicase conserved C-terminal domain CYK57_00805 PF09375 Imelysin CYK57_00806 PF10518 TAT (twin-arginine translocation) pathway signal sequence CYK57_00806 PF04261 Dyp-type peroxidase family CYK57_00808 PF02811 PHP domain CYK57_00810 PF08411 Exonuclease C-terminal CYK57_00810 PF00929 Exonuclease CYK57_00811 PF00654 Voltage gated chloride channel CYK57_00812 PF00152 tRNA synthetases class II (D, K and N) CYK57_00812 PF01336 OB-fold nucleic acid binding domain CYK57_00813 PF04055 Radical SAM superfamily CYK57_00815 PF01132 Elongation factor P (EF-P) OB domain CYK57_00815 PF08207 Elongation factor P (EF-P) KOW-like domain CYK57_00815 PF09285 Elongation factor P, C-terminal CYK57_00816 PF00749 tRNA synthetases class I (E and Q), catalytic domain CYK57_00816 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CYK57_00818 PF07690 Major Facilitator Superfamily CYK57_00819 PF01464 Transglycosylase SLT domain CYK57_00819 PF14718 Soluble lytic murein transglycosylase L domain CYK57_00820 PF00156 Phosphoribosyl transferase domain CYK57_00821 PF01053 Cys/Met metabolism PLP-dependent enzyme CYK57_00822 PF05173 Dihydrodipicolinate reductase, C-terminus CYK57_00822 PF01113 Dihydrodipicolinate reductase, N-terminus CYK57_00823 PF01728 FtsJ-like methyltransferase CYK57_00823 PF18125 RlmM ferredoxin-like domain CYK57_00825 PF04241 Protein of unknown function (DUF423) CYK57_00826 PF01565 FAD binding domain CYK57_00826 PF09330 D-lactate dehydrogenase, membrane binding CYK57_00827 PF00384 Molybdopterin oxidoreductase CYK57_00827 PF18364 Molybdopterin oxidoreductase N-terminal domain CYK57_00827 PF01568 Molydopterin dinucleotide binding domain CYK57_00829 PF03264 NapC/NirT cytochrome c family, N-terminal region CYK57_00830 PF06463 Molybdenum Cofactor Synthesis C CYK57_00830 PF04055 Radical SAM superfamily CYK57_00831 PF01967 MoaC family CYK57_00832 PF02597 ThiS family CYK57_00833 PF02391 MoaE protein CYK57_00834 PF02130 Uncharacterized protein family UPF0054 CYK57_00835 PF13718 GNAT acetyltransferase 2 CYK57_00835 PF05127 Helicase CYK57_00835 PF17176 tRNA-binding domain CYK57_00836 PF08272 Topoisomerase I zinc-ribbon-like CYK57_00836 PF01131 DNA topoisomerase CYK57_00836 PF01751 Toprim domain CYK57_00836 PF01396 Topoisomerase DNA binding C4 zinc finger CYK57_00837 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_00837 PF03466 LysR substrate binding domain CYK57_00839 PF00696 Amino acid kinase family CYK57_00839 PF00583 Acetyltransferase (GNAT) family CYK57_00840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYK57_00841 PF00155 Aminotransferase class I and II CYK57_00842 PF01053 Cys/Met metabolism PLP-dependent enzyme CYK57_00843 PF00266 Aminotransferase class-V CYK57_00844 PF00176 SNF2 family N-terminal domain CYK57_00844 PF00271 Helicase conserved C-terminal domain CYK57_00846 PF01555 DNA methylase CYK57_00847 PF01418 Helix-turn-helix domain, rpiR family CYK57_00847 PF01380 SIS domain CYK57_00848 PF04074 YhcH/YjgK/YiaL CYK57_00849 PF02541 Ppx/GppA phosphatase family CYK57_00850 PF04363 Protein of unknown function (DUF496) CYK57_00851 PF00696 Amino acid kinase family CYK57_00851 PF01842 ACT domain CYK57_00852 PF03477 ATP cone domain CYK57_00853 PF05166 YcgL domain CYK57_00854 PF03796 DnaB-like helicase C terminal domain CYK57_00854 PF00772 DnaB-like helicase N terminal domain CYK57_00855 PF01497 Periplasmic binding protein CYK57_00856 PF01032 FecCD transport family CYK57_00857 PF01032 FecCD transport family CYK57_00858 PF00005 ABC transporter CYK57_00859 PF01865 Protein of unknown function DUF47 CYK57_00860 PF01384 Phosphate transporter family CYK57_00861 PF08239 Bacterial SH3 domain CYK57_00863 PF01814 Hemerythrin HHE cation binding domain CYK57_00864 PF01702 Queuine tRNA-ribosyltransferase CYK57_00867 PF00313 'Cold-shock' DNA-binding domain CYK57_00868 PF00484 Carbonic anhydrase CYK57_00869 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYK57_00869 PF00205 Thiamine pyrophosphate enzyme, central domain CYK57_00869 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYK57_00870 PF10369 Small subunit of acetolactate synthase CYK57_00871 PF01523 Putative modulator of DNA gyrase CYK57_00872 PF04751 Protein of unknown function (DUF615) CYK57_00873 PF04247 Invasion gene expression up-regulator, SirB CYK57_00874 PF02441 Flavoprotein CYK57_00875 PF04474 Protein of unknown function (DUF554) CYK57_00877 PF01253 Translation initiation factor SUI1 CYK57_00878 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CYK57_00879 PF18073 Rubredoxin metal binding domain CYK57_00880 PF06305 Lipopolysaccharide assembly protein A domain CYK57_00881 PF00216 Bacterial DNA-binding protein CYK57_00882 PF00575 S1 RNA binding domain CYK57_00883 PF02224 Cytidylate kinase CYK57_00884 PF13180 PDZ domain CYK57_00886 PF03840 Preprotein translocase SecG subunit CYK57_00887 PF01131 DNA topoisomerase CYK57_00887 PF01751 Toprim domain CYK57_00888 PF00245 Alkaline phosphatase CYK57_00890 PF03411 Penicillin-insensitive murein endopeptidase CYK57_00891 PF01264 Chorismate synthase CYK57_00892 PF00924 Mechanosensitive ion channel CYK57_00892 PF12794 Mechanosensitive ion channel inner membrane domain 1 CYK57_00892 PF12795 Mechanosensitive ion channel porin domain CYK57_00893 PF00924 Mechanosensitive ion channel CYK57_00893 PF12794 Mechanosensitive ion channel inner membrane domain 1 CYK57_00893 PF12795 Mechanosensitive ion channel porin domain CYK57_00894 PF00501 AMP-binding enzyme CYK57_00895 PF03925 SeqA protein C-terminal domain CYK57_00895 PF17206 SeqA protein N-terminal domain CYK57_00896 PF00561 alpha/beta hydrolase fold CYK57_00897 PF13649 Methyltransferase domain CYK57_00902 PF00575 S1 RNA binding domain CYK57_00902 PF08206 Ribonuclease B OB domain CYK57_00902 PF00773 RNB domain CYK57_00903 PF03788 LrgA family CYK57_00904 PF04172 LrgB-like family CYK57_00905 PF00149 Calcineurin-like phosphoesterase CYK57_00907 PF03889 Alternative ribosome-rescue factor A CYK57_00908 PF13649 Methyltransferase domain CYK57_00909 PF01594 AI-2E family transporter CYK57_00910 PF01933 Uncharacterised protein family UPF0052 CYK57_00911 PF02547 Queuosine biosynthesis protein CYK57_00912 PF03772 Competence protein CYK57_00912 PF13567 Domain of unknown function (DUF4131) CYK57_00912 PF00753 Metallo-beta-lactamase superfamily CYK57_00913 PF00375 Sodium:dicarboxylate symporter family CYK57_00914 PF01219 Prokaryotic diacylglycerol kinase CYK57_00915 PF02872 5'-nucleotidase, C-terminal domain CYK57_00915 PF00149 Calcineurin-like phosphoesterase CYK57_00920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYK57_00920 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYK57_00921 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CYK57_00921 PF00364 Biotin-requiring enzyme CYK57_00921 PF02817 e3 binding domain CYK57_00922 PF17831 Pyruvate dehydrogenase E1 component middle domain CYK57_00922 PF00456 Transketolase, thiamine diphosphate binding domain CYK57_00923 PF01180 Dihydroorotate dehydrogenase CYK57_00924 PF14572 Phosphoribosyl synthetase-associated domain CYK57_00924 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CYK57_00925 PF08544 GHMP kinases C terminal CYK57_00925 PF00288 GHMP kinases N terminal domain CYK57_00926 PF03550 Outer membrane lipoprotein LolB CYK57_00927 PF00664 ABC transporter transmembrane region CYK57_00927 PF00005 ABC transporter CYK57_00928 PF04172 LrgB-like family CYK57_00930 PF06733 DEAD_2 CYK57_00930 PF13307 Helicase C-terminal domain CYK57_00932 PF17755 UvrA DNA-binding domain CYK57_00932 PF17760 UvrA interaction domain CYK57_00934 PF00436 Single-strand binding protein family CYK57_00939 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_00939 PF03466 LysR substrate binding domain CYK57_00940 PF03060 Nitronate monooxygenase CYK57_00943 PF07690 Major Facilitator Superfamily CYK57_00944 PF04237 YjbR CYK57_00945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYK57_00945 PF00005 ABC transporter CYK57_00946 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00946 PF12911 N-terminal TM domain of oligopeptide transport permease C CYK57_00947 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_00948 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYK57_00949 PF18024 Helix-turn-helix domain CYK57_00949 PF00158 Sigma-54 interaction domain CYK57_00950 PF13580 SIS domain CYK57_00952 PF01293 Phosphoenolpyruvate carboxykinase CYK57_00953 PF04977 Septum formation initiator CYK57_00954 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CYK57_00955 PF02542 YgbB family CYK57_00956 PF00884 Sulfatase CYK57_00957 PF00111 2Fe-2S iron-sulfur cluster binding domain CYK57_00957 PF03473 MOSC domain CYK57_00957 PF03476 MOSC N-terminal beta barrel domain CYK57_00958 PF02609 Exonuclease VII small subunit CYK57_00959 PF00348 Polyprenyl synthetase CYK57_00961 PF00152 tRNA synthetases class II (D, K and N) CYK57_00961 PF01336 OB-fold nucleic acid binding domain CYK57_00963 PF10150 Ribonuclease E/G family CYK57_00963 PF00575 S1 RNA binding domain CYK57_00964 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CYK57_00964 PF18381 YcaO cyclodehydratase C-terminal domain CYK57_00965 PF08774 VRR-NUC domain CYK57_00965 PF04851 Type III restriction enzyme, res subunit CYK57_00966 PF18273 Type III R-M EcoP15I C-terminal domain CYK57_00966 PF01555 DNA methylase CYK57_00967 PF08003 Protein of unknown function (DUF1698) CYK57_00969 PF06725 3D domain CYK57_00969 PF03562 MltA specific insert domain CYK57_00971 PF02601 Exonuclease VII, large subunit CYK57_00971 PF13742 OB-fold nucleic acid binding domain CYK57_00973 PF00576 HIUase/Transthyretin family CYK57_00974 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CYK57_00974 PF00356 Bacterial regulatory proteins, lacI family CYK57_00975 PF09335 SNARE associated Golgi protein CYK57_00976 PF01751 Toprim domain CYK57_00976 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYK57_00976 PF18053 DNA gyrase B subunit insert domain CYK57_00976 PF00204 DNA gyrase B CYK57_00976 PF00986 DNA gyrase B subunit, carboxyl terminus CYK57_00978 PF01040 UbiA prenyltransferase family CYK57_00979 PF08220 DeoR-like helix-turn-helix domain CYK57_00979 PF00455 DeoR C terminal sensor domain CYK57_00980 PF08328 Adenylosuccinate lyase C-terminal CYK57_00980 PF00206 Lyase CYK57_00981 PF04356 Protein of unknown function (DUF489) CYK57_00982 PF00664 ABC transporter transmembrane region CYK57_00982 PF00005 ABC transporter CYK57_00983 PF00664 ABC transporter transmembrane region CYK57_00983 PF00005 ABC transporter CYK57_00985 PF04357 TamB, inner membrane protein subunit of TAM complex CYK57_00986 PF17243 POTRA domain TamA domain 1 CYK57_00986 PF01103 Surface antigen CYK57_00987 PF04748 Divergent polysaccharide deacetylase CYK57_00988 PF01551 Peptidase family M23 CYK57_00989 PF00300 Histidine phosphatase superfamily (branch 1) CYK57_00990 PF01810 LysE type translocator CYK57_00991 PF00485 Phosphoribulokinase / Uridine kinase family CYK57_00992 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CYK57_00993 PF14278 Transcriptional regulator C-terminal region CYK57_00993 PF00440 Bacterial regulatory proteins, tetR family CYK57_00995 PF13533 Biotin-lipoyl like CYK57_00996 PF00005 ABC transporter CYK57_00998 PF02321 Outer membrane efflux protein CYK57_00999 PF02233 NAD(P) transhydrogenase beta subunit CYK57_01000 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CYK57_01000 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CYK57_01000 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CYK57_01001 PF00588 SpoU rRNA Methylase family CYK57_01002 PF14489 QueF-like protein CYK57_01002 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CYK57_01004 PF00578 AhpC/TSA family CYK57_01005 PF06969 HemN C-terminal domain CYK57_01005 PF04055 Radical SAM superfamily CYK57_01006 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYK57_01007 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01008 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYK57_01008 PF00005 ABC transporter CYK57_01009 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CYK57_01009 PF00005 ABC transporter CYK57_01010 PF00890 FAD binding domain CYK57_01011 PF01717 Cobalamin-independent synthase, Catalytic domain CYK57_01012 PF02219 Methylenetetrahydrofolate reductase CYK57_01013 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYK57_01014 PF03222 Tryptophan/tyrosine permease family CYK57_01015 PF03315 Serine dehydratase beta chain CYK57_01015 PF03313 Serine dehydratase alpha chain CYK57_01016 PF01266 FAD dependent oxidoreductase CYK57_01016 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CYK57_01017 PF00218 Indole-3-glycerol phosphate synthase CYK57_01017 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CYK57_01018 PF12728 Helix-turn-helix domain CYK57_01018 PF02661 Fic/DOC family CYK57_01019 PF04287 tRNA pseudouridine synthase C CYK57_01020 PF00849 RNA pseudouridylate synthase CYK57_01021 PF03701 Uncharacterised protein family (UPF0181) CYK57_01023 PF01928 CYTH domain CYK57_01024 PF04317 YcjX-like family, DUF463 CYK57_01026 PF01668 SmpB protein CYK57_01027 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYK57_01027 PF02403 Seryl-tRNA synthetase N-terminal domain CYK57_01028 PF01546 Peptidase family M20/M25/M40 CYK57_01028 PF07687 Peptidase dimerisation domain CYK57_01029 PF03606 C4-dicarboxylate anaerobic carrier CYK57_01030 PF03575 Peptidase family S51 CYK57_01031 PF00133 tRNA synthetases class I (I, L, M and V) CYK57_01031 PF08264 Anticodon-binding domain of tRNA CYK57_01031 PF13603 Leucyl-tRNA synthetase, Domain 2 CYK57_01032 PF04390 Lipopolysaccharide-assembly CYK57_01033 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CYK57_01033 PF06144 DNA polymerase III, delta subunit CYK57_01034 PF03884 DNA gyrase inhibitor YacG CYK57_01035 PF01121 Dephospho-CoA kinase CYK57_01037 PF00482 Type II secretion system (T2SS), protein F CYK57_01038 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CYK57_01038 PF00437 Type II/IV secretion system protein CYK57_01039 PF07963 Prokaryotic N-terminal methylation motif CYK57_01040 PF18073 Rubredoxin metal binding domain CYK57_01042 PF00186 Dihydrofolate reductase CYK57_01043 PF00696 Amino acid kinase family CYK57_01043 PF01472 PUA domain CYK57_01044 PF01925 Sulfite exporter TauE/SafE CYK57_01045 PF10576 Iron-sulfur binding domain of endonuclease III CYK57_01045 PF00633 Helix-hairpin-helix motif CYK57_01045 PF00730 HhH-GPD superfamily base excision DNA repair protein CYK57_01046 PF00108 Thiolase, N-terminal domain CYK57_01046 PF02803 Thiolase, C-terminal domain CYK57_01047 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CYK57_01047 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CYK57_01047 PF00378 Enoyl-CoA hydratase/isomerase CYK57_01050 PF02634 FdhD/NarQ family CYK57_01051 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CYK57_01051 PF00384 Molybdopterin oxidoreductase CYK57_01051 PF01568 Molydopterin dinucleotide binding domain CYK57_01052 PF01568 Molydopterin dinucleotide binding domain CYK57_01052 PF00384 Molybdopterin oxidoreductase CYK57_01052 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CYK57_01053 PF09163 Formate dehydrogenase N, transmembrane CYK57_01053 PF13247 4Fe-4S dicluster domain CYK57_01054 PF01292 Prokaryotic cytochrome b561 CYK57_01055 PF04216 Protein involved in formate dehydrogenase formation CYK57_01059 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CYK57_01059 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CYK57_01061 PF00701 Dihydrodipicolinate synthetase family CYK57_01062 PF03279 Bacterial lipid A biosynthesis acyltransferase CYK57_01063 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CYK57_01064 PF01416 tRNA pseudouridine synthase CYK57_01066 PF01227 GTP cyclohydrolase I CYK57_01067 PF01227 GTP cyclohydrolase I CYK57_01068 PF01227 GTP cyclohydrolase I CYK57_01071 PF12464 Maltose acetyltransferase CYK57_01071 PF14602 Hexapeptide repeat of succinyl-transferase CYK57_01072 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CYK57_01073 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_01073 PF03466 LysR substrate binding domain CYK57_01074 PF03180 NLPA lipoprotein CYK57_01075 PF03180 NLPA lipoprotein CYK57_01076 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01077 PF09383 NIL domain CYK57_01077 PF00005 ABC transporter CYK57_01078 PF01406 tRNA synthetases class I (C) catalytic domain CYK57_01078 PF09190 DALR domain CYK57_01079 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYK57_01080 PF01966 HD domain CYK57_01080 PF01743 Poly A polymerase head domain CYK57_01080 PF12627 Probable RNA and SrmB- binding site of polymerase A CYK57_01082 PF13333 Integrase core domain CYK57_01082 PF13276 HTH-like domain CYK57_01082 PF00665 Integrase core domain CYK57_01083 PF13333 Integrase core domain CYK57_01083 PF00665 Integrase core domain CYK57_01084 PF13333 Integrase core domain CYK57_01084 PF00665 Integrase core domain CYK57_01085 PF07715 TonB-dependent Receptor Plug Domain CYK57_01085 PF00593 TonB dependent receptor CYK57_01089 PF04384 Iron-sulphur cluster assembly CYK57_01090 PF00111 2Fe-2S iron-sulfur cluster binding domain CYK57_01091 PF00012 Hsp70 protein CYK57_01092 PF10946 Protein of unknown function DUF2625 CYK57_01094 PF07743 HSCB C-terminal oligomerisation domain CYK57_01095 PF01521 Iron-sulphur cluster biosynthesis CYK57_01097 PF01592 NifU-like N terminal domain CYK57_01098 PF00266 Aminotransferase class-V CYK57_01099 PF02082 Transcriptional regulator CYK57_01100 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CYK57_01101 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CYK57_01101 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CYK57_01102 PF01627 Hpt domain CYK57_01102 PF00989 PAS fold CYK57_01102 PF00072 Response regulator receiver domain CYK57_01102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYK57_01102 PF18415 Histidine kinase receptor ArcB trans-membrane domain CYK57_01102 PF00512 His Kinase A (phospho-acceptor) domain CYK57_01104 PF01713 Smr domain CYK57_01106 PF08241 Methyltransferase domain CYK57_01107 PF04301 Protein of unknown function (DUF452) CYK57_01108 PF00155 Aminotransferase class I and II CYK57_01109 PF00202 Aminotransferase class-III CYK57_01110 PF05175 Methyltransferase small domain CYK57_01111 PF01272 Transcription elongation factor, GreA/GreB, C-term CYK57_01111 PF03449 Transcription elongation factor, N-terminal CYK57_01112 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CYK57_01119 PF01381 Helix-turn-helix CYK57_01123 PF00005 ABC transporter CYK57_01123 PF00664 ABC transporter transmembrane region CYK57_01123 PF03412 Peptidase C39 family CYK57_01124 PF08339 RTX C-terminal domain CYK57_01124 PF02382 N-terminal domain in RTX protein CYK57_01124 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CYK57_01125 PF02794 RTX toxin acyltransferase family CYK57_01126 PF17176 tRNA-binding domain CYK57_01126 PF05127 Helicase CYK57_01126 PF13718 GNAT acetyltransferase 2 CYK57_01127 PF01808 AICARFT/IMPCHase bienzyme CYK57_01127 PF02142 MGS-like domain CYK57_01129 PF13332 Hemagglutinin repeat CYK57_01129 PF05860 haemagglutination activity domain CYK57_01129 PF04829 Pre-toxin domain with VENN motif CYK57_01129 PF13018 Extended Signal Peptide of Type V secretion system CYK57_01130 PF08479 POTRA domain, ShlB-type CYK57_01130 PF17287 POTRA domain CYK57_01130 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CYK57_01131 PF08479 POTRA domain, ShlB-type CYK57_01131 PF17287 POTRA domain CYK57_01131 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CYK57_01132 PF04453 LPS transport system D CYK57_01132 PF03968 OstA-like protein CYK57_01133 PF06969 HemN C-terminal domain CYK57_01133 PF04055 Radical SAM superfamily CYK57_01135 PF04220 Der GTPase activator (YihI) CYK57_01137 PF06826 Predicted Permease Membrane Region CYK57_01137 PF02080 TrkA-C domain CYK57_01138 PF03616 Sodium/glutamate symporter CYK57_01139 PF06062 Uncharacterised protein family (UPF0231) CYK57_01140 PF08335 GlnD PII-uridylyltransferase CYK57_01140 PF03710 Glutamate-ammonia ligase adenylyltransferase CYK57_01142 PF03795 YCII-related domain CYK57_01143 PF03061 Thioesterase superfamily CYK57_01144 PF04279 Intracellular septation protein A CYK57_01146 PF04217 Protein of unknown function, DUF412 CYK57_01148 PF01171 PP-loop family CYK57_01149 PF13726 Na+-H+ antiporter family CYK57_01149 PF03553 Na+/H+ antiporter family CYK57_01150 PF03372 Endonuclease/Exonuclease/phosphatase family CYK57_01151 PF03466 LysR substrate binding domain CYK57_01151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_01155 PF01197 Ribosomal protein L31 CYK57_01156 PF00456 Transketolase, thiamine diphosphate binding domain CYK57_01156 PF02780 Transketolase, C-terminal domain CYK57_01156 PF02779 Transketolase, pyrimidine binding domain CYK57_01158 PF13333 Integrase core domain CYK57_01158 PF00665 Integrase core domain CYK57_01158 PF13276 HTH-like domain CYK57_01159 PF13333 Integrase core domain CYK57_01159 PF00665 Integrase core domain CYK57_01160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYK57_01160 PF00183 Hsp90 protein CYK57_01161 PF00199 Catalase CYK57_01161 PF06628 Catalase-related immune-responsive CYK57_01163 PF13333 Integrase core domain CYK57_01163 PF00665 Integrase core domain CYK57_01164 PF00149 Calcineurin-like phosphoesterase CYK57_01165 PF00317 Ribonucleotide reductase, all-alpha domain CYK57_01165 PF02867 Ribonucleotide reductase, barrel domain CYK57_01165 PF03477 ATP cone domain CYK57_01167 PF00268 Ribonucleotide reductase, small chain CYK57_01168 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CYK57_01168 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CYK57_01169 PF08544 GHMP kinases C terminal CYK57_01169 PF10509 Galactokinase galactose-binding signature CYK57_01169 PF00288 GHMP kinases N terminal domain CYK57_01170 PF01263 Aldose 1-epimerase CYK57_01171 PF02929 Beta galactosidase small chain CYK57_01171 PF00703 Glycosyl hydrolases family 2 CYK57_01171 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CYK57_01171 PF02837 Glycosyl hydrolases family 2, sugar binding domain CYK57_01171 PF16353 Domain of unknown function(DUF4981) CYK57_01172 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CYK57_01172 PF06594 Haemolysin-type calcium binding protein related domain CYK57_01174 PF10609 NUBPL iron-transfer P-loop NTPase CYK57_01176 PF01914 MarC family integral membrane protein CYK57_01177 PF13145 PPIC-type PPIASE domain CYK57_01178 PF00999 Sodium/hydrogen exchanger family CYK57_01179 PF00312 Ribosomal protein S15 CYK57_01180 PF05661 Protein of unknown function (DUF808) CYK57_01181 PF07219 HemY protein N-terminus CYK57_01182 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CYK57_01183 PF02602 Uroporphyrinogen-III synthase HemD CYK57_01184 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CYK57_01184 PF03900 Porphobilinogen deaminase, C-terminal domain CYK57_01185 PF00171 Aldehyde dehydrogenase family CYK57_01185 PF00465 Iron-containing alcohol dehydrogenase CYK57_01186 PF00118 TCP-1/cpn60 chaperonin family CYK57_01187 PF00166 Chaperonin 10 Kd subunit CYK57_01188 PF01048 Phosphorylase superfamily CYK57_01189 PF01791 DeoC/LacD family aldolase CYK57_01190 PF07662 Na+ dependent nucleoside transporter C-terminus CYK57_01190 PF01773 Na+ dependent nucleoside transporter N-terminus CYK57_01190 PF07670 Nucleoside recognition CYK57_01192 PF01081 KDPG and KHG aldolase CYK57_01193 PF00294 pfkB family carbohydrate kinase CYK57_01194 PF02614 Glucuronate isomerase CYK57_01195 PF17137 Domain of unknown function (DUF5110) CYK57_01195 PF13802 Galactose mutarotase-like CYK57_01195 PF01055 Glycosyl hydrolases family 31 CYK57_01195 PF16338 Domain of unknown function (DUF4968) CYK57_01196 PF07729 FCD domain CYK57_01196 PF00392 Bacterial regulatory proteins, gntR family CYK57_01198 PF01625 Peptide methionine sulfoxide reductase CYK57_01198 PF01641 SelR domain CYK57_01199 PF00535 Glycosyl transferase family 2 CYK57_01200 PF00535 Glycosyl transferase family 2 CYK57_01202 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CYK57_01204 PF04230 Polysaccharide pyruvyl transferase CYK57_01205 PF02698 DUF218 domain CYK57_01206 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CYK57_01206 PF00271 Helicase conserved C-terminal domain CYK57_01206 PF00270 DEAD/DEAH box helicase CYK57_01206 PF18074 Primosomal protein N C-terminal domain CYK57_01206 PF17764 3′ DNA-binding domain (3′BD) CYK57_01207 PF01817 Chorismate mutase type II CYK57_01207 PF00800 Prephenate dehydratase CYK57_01208 PF01432 Peptidase family M3 CYK57_01210 PF04055 Radical SAM superfamily CYK57_01211 PF01228 Glycine radical CYK57_01211 PF02901 Pyruvate formate lyase-like CYK57_01212 PF01226 Formate/nitrite transporter CYK57_01214 PF01435 Peptidase family M48 CYK57_01215 PF11799 impB/mucB/samB family C-terminal domain CYK57_01215 PF11798 IMS family HHH motif CYK57_01215 PF00817 impB/mucB/samB family CYK57_01216 PF03956 Lysine exporter LysO CYK57_01217 PF00425 chorismate binding enzyme CYK57_01218 PF00155 Aminotransferase class I and II CYK57_01219 PF00892 EamA-like transporter family CYK57_01220 PF00892 EamA-like transporter family CYK57_01221 PF01810 LysE type translocator CYK57_01222 PF07715 TonB-dependent Receptor Plug Domain CYK57_01222 PF04886 PT repeat CYK57_01222 PF00593 TonB dependent receptor CYK57_01223 PF01243 Pyridoxamine 5'-phosphate oxidase CYK57_01225 PF03918 Cytochrome C biogenesis protein CYK57_01226 PF08534 Redoxin CYK57_01227 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CYK57_01227 PF01578 Cytochrome C assembly protein CYK57_01228 PF00999 Sodium/hydrogen exchanger family CYK57_01228 PF02254 TrkA-N domain CYK57_01229 PF12633 Adenylate cyclase NT domain CYK57_01229 PF01295 Adenylate cyclase, class-I CYK57_01230 PF02801 Beta-ketoacyl synthase, C-terminal domain CYK57_01230 PF00109 Beta-ketoacyl synthase, N-terminal domain CYK57_01232 PF00665 Integrase core domain CYK57_01232 PF13276 HTH-like domain CYK57_01232 PF13333 Integrase core domain CYK57_01233 PF00665 Integrase core domain CYK57_01233 PF13333 Integrase core domain CYK57_01234 PF00665 Integrase core domain CYK57_01234 PF13333 Integrase core domain CYK57_01235 PF04076 Bacterial OB fold (BOF) protein CYK57_01238 PF00486 Transcriptional regulatory protein, C terminal CYK57_01238 PF00072 Response regulator receiver domain CYK57_01239 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYK57_01239 PF00512 His Kinase A (phospho-acceptor) domain CYK57_01239 PF08521 Two-component sensor kinase N-terminal CYK57_01240 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CYK57_01241 PF02699 Preprotein translocase subunit CYK57_01242 PF02355 Protein export membrane protein CYK57_01242 PF07549 SecD/SecF GG Motif CYK57_01242 PF13721 SecD export protein N-terminal TM region CYK57_01243 PF07549 SecD/SecF GG Motif CYK57_01243 PF02355 Protein export membrane protein CYK57_01244 PF00210 Ferritin-like domain CYK57_01245 PF00210 Ferritin-like domain CYK57_01246 PF00860 Permease family CYK57_01247 PF02545 Maf-like protein CYK57_01249 PF02926 THUMP domain CYK57_01249 PF02568 Thiamine biosynthesis protein (ThiI) CYK57_01250 PF00709 Adenylosuccinate synthetase CYK57_01251 PF01145 SPFH domain / Band 7 family CYK57_01252 PF01145 SPFH domain / Band 7 family CYK57_01253 PF00085 Thioredoxin CYK57_01254 PF00860 Permease family CYK57_01255 PF02772 S-adenosylmethionine synthetase, central domain CYK57_01255 PF00438 S-adenosylmethionine synthetase, N-terminal domain CYK57_01255 PF02773 S-adenosylmethionine synthetase, C-terminal domain CYK57_01257 PF13520 Amino acid permease CYK57_01258 PF13520 Amino acid permease CYK57_01260 PF07687 Peptidase dimerisation domain CYK57_01260 PF01546 Peptidase family M20/M25/M40 CYK57_01261 PF03922 OmpW family CYK57_01262 PF07724 AAA domain (Cdc48 subfamily) CYK57_01262 PF00004 ATPase family associated with various cellular activities (AAA) CYK57_01262 PF10431 C-terminal, D2-small domain, of ClpB protein CYK57_01262 PF17871 AAA lid domain CYK57_01262 PF02861 Clp amino terminal domain, pathogenicity island component CYK57_01263 PF01758 Sodium Bile acid symporter family CYK57_01264 PF03960 ArsC family CYK57_01266 PF10415 Fumarase C C-terminus CYK57_01266 PF00206 Lyase CYK57_01269 PF00155 Aminotransferase class I and II CYK57_01269 PF00392 Bacterial regulatory proteins, gntR family CYK57_01270 PF02769 AIR synthase related protein, C-terminal domain CYK57_01270 PF00586 AIR synthase related protein, N-terminal domain CYK57_01271 PF00728 Glycosyl hydrolase family 20, catalytic domain CYK57_01271 PF04650 YSIRK type signal peptide CYK57_01271 PF07501 G5 domain CYK57_01271 PF00746 LPXTG cell wall anchor motif CYK57_01272 PF06508 Queuosine biosynthesis protein QueC CYK57_01273 PF01242 6-pyruvoyl tetrahydropterin synthase CYK57_01274 PF04055 Radical SAM superfamily CYK57_01276 PF00883 Cytosol aminopeptidase family, catalytic domain CYK57_01276 PF02789 Cytosol aminopeptidase family, N-terminal domain CYK57_01278 PF03739 Lipopolysaccharide export system permease LptF/LptG CYK57_01279 PF03739 Lipopolysaccharide export system permease LptF/LptG CYK57_01280 PF07733 Bacterial DNA polymerase III alpha NTPase domain CYK57_01280 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CYK57_01280 PF14579 Helix-hairpin-helix motif CYK57_01280 PF02811 PHP domain CYK57_01280 PF01336 OB-fold nucleic acid binding domain CYK57_01281 PF02222 ATP-grasp domain CYK57_01281 PF01370 NAD dependent epimerase/dehydratase family CYK57_01282 PF01553 Acyltransferase CYK57_01283 PF01726 LexA DNA binding domain CYK57_01283 PF00717 Peptidase S24-like CYK57_01284 PF02976 DNA mismatch repair enzyme MutH CYK57_01285 PF03741 Integral membrane protein TerC family CYK57_01286 PF00933 Glycosyl hydrolase family 3 N terminal domain CYK57_01287 PF05958 tRNA (Uracil-5-)-methyltransferase CYK57_01288 PF00113 Enolase, C-terminal TIM barrel domain CYK57_01288 PF03952 Enolase, N-terminal domain CYK57_01289 PF00293 NUDIX domain CYK57_01290 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) CYK57_01291 PF09382 RQC domain CYK57_01291 PF16124 RecQ zinc-binding CYK57_01291 PF00570 HRDC domain CYK57_01291 PF00271 Helicase conserved C-terminal domain CYK57_01291 PF00270 DEAD/DEAH box helicase CYK57_01292 PF01491 Frataxin-like domain CYK57_01293 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CYK57_01294 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CYK57_01295 PF00814 Glycoprotease family CYK57_01296 PF13525 Outer membrane lipoprotein CYK57_01297 PF00849 RNA pseudouridylate synthase CYK57_01297 PF01479 S4 domain CYK57_01298 PF14256 YwiC-like protein CYK57_01299 PF00365 Phosphofructokinase CYK57_01300 PF00266 Aminotransferase class-V CYK57_01301 PF00565 Staphylococcal nuclease homologue CYK57_01302 PF01235 Sodium:alanine symporter family CYK57_01303 PF01594 AI-2E family transporter CYK57_01305 PF01136 Peptidase family U32 CYK57_01305 PF16325 Peptidase family U32 C-terminal domain CYK57_01306 PF04932 O-Antigen ligase CYK57_01307 PF00534 Glycosyl transferases group 1 CYK57_01307 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CYK57_01308 PF01467 Cytidylyltransferase-like CYK57_01309 PF00929 Exonuclease CYK57_01310 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CYK57_01311 PF01520 N-acetylmuramoyl-L-alanine amidase CYK57_01311 PF01476 LysM domain CYK57_01312 PF00342 Phosphoglucose isomerase CYK57_01313 PF04380 Membrane fusogenic activity CYK57_01318 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CYK57_01318 PF08501 Shikimate dehydrogenase substrate binding domain CYK57_01318 PF01488 Shikimate / quinate 5-dehydrogenase CYK57_01319 PF01300 Telomere recombination CYK57_01320 PF04266 ASCH domain CYK57_01321 PF02631 RecX family CYK57_01322 PF00154 recA bacterial DNA recombination protein CYK57_01323 PF01063 Amino-transferase class IV CYK57_01324 PF00425 chorismate binding enzyme CYK57_01325 PF02646 RmuC family CYK57_01325 PF02646 RmuC family CYK57_01326 PF00117 Glutamine amidotransferase class-I CYK57_01327 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CYK57_01327 PF03625 Domain of unknown function DUF302 CYK57_01328 PF02938 GAD domain CYK57_01328 PF00152 tRNA synthetases class II (D, K and N) CYK57_01328 PF01336 OB-fold nucleic acid binding domain CYK57_01329 PF00293 NUDIX domain CYK57_01330 PF01709 Transcriptional regulator CYK57_01332 PF02075 Crossover junction endodeoxyribonuclease RuvC CYK57_01333 PF00675 Insulinase (Peptidase family M16) CYK57_01333 PF05193 Peptidase M16 inactive domain CYK57_01334 PF08267 Cobalamin-independent synthase, N-terminal domain CYK57_01334 PF01717 Cobalamin-independent synthase, Catalytic domain CYK57_01335 PF00939 Sodium:sulfate symporter transmembrane region CYK57_01336 PF00939 Sodium:sulfate symporter transmembrane region CYK57_01337 PF03466 LysR substrate binding domain CYK57_01337 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_01338 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B CYK57_01339 PF00849 RNA pseudouridylate synthase CYK57_01339 PF01479 S4 domain CYK57_01340 PF01300 Telomere recombination CYK57_01341 PF04261 Dyp-type peroxidase family CYK57_01342 PF00425 chorismate binding enzyme CYK57_01342 PF04715 Anthranilate synthase component I, N terminal region CYK57_01343 PF00117 Glutamine amidotransferase class-I CYK57_01344 PF02885 Glycosyl transferase family, helical bundle domain CYK57_01344 PF00591 Glycosyl transferase family, a/b domain CYK57_01345 PF08241 Methyltransferase domain CYK57_01346 PF16036 Chalcone isomerase-like CYK57_01347 PF04325 Protein of unknown function (DUF465) CYK57_01348 PF03948 Ribosomal protein L9, C-terminal domain CYK57_01348 PF01281 Ribosomal protein L9, N-terminal domain CYK57_01349 PF01084 Ribosomal protein S18 CYK57_01350 PF00436 Single-strand binding protein family CYK57_01351 PF01250 Ribosomal protein S6 CYK57_01352 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CYK57_01352 PF02843 Phosphoribosylglycinamide synthetase, C domain CYK57_01352 PF02844 Phosphoribosylglycinamide synthetase, N domain CYK57_01353 PF04973 Nicotinamide mononucleotide transporter CYK57_01354 PF09976 Tetratricopeptide repeat-like domain CYK57_01355 PF13393 Histidyl-tRNA synthetase CYK57_01355 PF03129 Anticodon binding domain CYK57_01356 PF04551 GcpE protein CYK57_01357 PF13464 Domain of unknown function (DUF4115) CYK57_01359 PF00916 Sulfate permease family CYK57_01359 PF01740 STAS domain CYK57_01361 PF14698 Argininosuccinate lyase C-terminal CYK57_01361 PF00206 Lyase CYK57_01362 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CYK57_01362 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CYK57_01364 PF00999 Sodium/hydrogen exchanger family CYK57_01364 PF02254 TrkA-N domain CYK57_01365 PF13173 AAA domain CYK57_01365 PF13635 Domain of unknown function (DUF4143) CYK57_01369 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_01369 PF03466 LysR substrate binding domain CYK57_01373 PF10114 Sensory domain found in PocR CYK57_01373 PF12833 Helix-turn-helix domain CYK57_01374 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_01374 PF03466 LysR substrate binding domain CYK57_01375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CYK57_01376 PF00296 Luciferase-like monooxygenase CYK57_01380 PF18766 SWI2/SNF2 ATPase CYK57_01380 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CYK57_01380 PF11867 Domain of unknown function (DUF3387) CYK57_01381 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CYK57_01381 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CYK57_01382 PF00881 Nitroreductase family CYK57_01383 PF01914 MarC family integral membrane protein CYK57_01385 PF03852 DNA mismatch endonuclease Vsr CYK57_01387 PF00145 C-5 cytosine-specific DNA methylase CYK57_01389 PF00756 Putative esterase CYK57_01391 PF02798 Glutathione S-transferase, N-terminal domain CYK57_01394 PF00107 Zinc-binding dehydrogenase CYK57_01394 PF08240 Alcohol dehydrogenase GroES-like domain CYK57_01395 PF02028 BCCT, betaine/carnitine/choline family transporter CYK57_01398 PF03595 Voltage-dependent anion channel CYK57_01399 PF13419 Haloacid dehalogenase-like hydrolase CYK57_01401 PF00664 ABC transporter transmembrane region CYK57_01401 PF00005 ABC transporter CYK57_01402 PF02664 S-Ribosylhomocysteinase (LuxS) CYK57_01403 PF02470 MlaD protein CYK57_01404 PF01475 Ferric uptake regulator family CYK57_01405 PF00258 Flavodoxin CYK57_01406 PF01402 Ribbon-helix-helix protein, copG family CYK57_01407 PF04073 Aminoacyl-tRNA editing domain CYK57_01409 PF00860 Permease family CYK57_01410 PF02635 DsrE/DsrF-like family CYK57_01413 PF01176 Translation initiation factor 1A / IF-1 CYK57_01414 PF10144 Bacterial virulence factor haemolysin CYK57_01415 PF18429 Domain of unknown function (DUF5609) CYK57_01416 PF04461 Protein of unknown function (DUF520) CYK57_01418 PF00343 Carbohydrate phosphorylase CYK57_01419 PF17874 MalT-like TPR region CYK57_01419 PF00196 Bacterial regulatory proteins, luxR family CYK57_01420 PF07148 Maltose operon periplasmic protein precursor (MalM) CYK57_01421 PF02264 LamB porin CYK57_01422 PF00005 ABC transporter CYK57_01422 PF17912 MalK OB fold domain CYK57_01423 PF01547 Bacterial extracellular solute-binding protein CYK57_01424 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01424 PF14785 Maltose transport system permease protein MalF P2 domain CYK57_01425 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01426 PF02446 4-alpha-glucanotransferase CYK57_01427 PF02554 Carbon starvation protein CstA CYK57_01428 PF01026 TatD related DNase CYK57_01429 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYK57_01429 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CYK57_01431 PF03350 Uncharacterized protein family, UPF0114 CYK57_01432 PF00881 Nitroreductase family CYK57_01435 PF00005 ABC transporter CYK57_01436 PF01116 Fructose-bisphosphate aldolase class-II CYK57_01437 PF00162 Phosphoglycerate kinase CYK57_01438 PF00939 Sodium:sulfate symporter transmembrane region CYK57_01439 PF00939 Sodium:sulfate symporter transmembrane region CYK57_01440 PF00939 Sodium:sulfate symporter transmembrane region CYK57_01441 PF00204 DNA gyrase B CYK57_01441 PF00986 DNA gyrase B subunit, carboxyl terminus CYK57_01441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYK57_01441 PF01751 Toprim domain CYK57_01442 PF00512 His Kinase A (phospho-acceptor) domain CYK57_01442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CYK57_01443 PF00486 Transcriptional regulatory protein, C terminal CYK57_01443 PF00072 Response regulator receiver domain CYK57_01444 PF00005 ABC transporter CYK57_01445 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01446 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01447 PF12849 PBP superfamily domain CYK57_01448 PF00376 MerR family regulatory protein CYK57_01448 PF09278 MerR, DNA binding CYK57_01450 PF00403 Heavy-metal-associated domain CYK57_01451 PF00403 Heavy-metal-associated domain CYK57_01452 PF00106 short chain dehydrogenase CYK57_01453 PF00881 Nitroreductase family CYK57_01454 PF01343 Peptidase family S49 CYK57_01455 PF00445 Ribonuclease T2 family CYK57_01456 PF10263 SprT-like family CYK57_01456 PF17283 SprT-like zinc ribbon domain CYK57_01457 PF07992 Pyridine nucleotide-disulphide oxidoreductase CYK57_01458 PF17674 HHH domain CYK57_01458 PF09371 Tex-like protein N-terminal domain CYK57_01458 PF16921 Tex protein YqgF-like domain CYK57_01458 PF00575 S1 RNA binding domain CYK57_01460 PF04055 Radical SAM superfamily CYK57_01465 PF00749 tRNA synthetases class I (E and Q), catalytic domain CYK57_01467 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CYK57_01468 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CYK57_01469 PF03966 Trm112p-like protein CYK57_01470 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CYK57_01471 PF07724 AAA domain (Cdc48 subfamily) CYK57_01471 PF10431 C-terminal, D2-small domain, of ClpB protein CYK57_01471 PF06689 ClpX C4-type zinc finger CYK57_01472 PF00574 Clp protease CYK57_01473 PF02657 Fe-S metabolism associated domain CYK57_01476 PF00929 Exonuclease CYK57_01477 PF00005 ABC transporter CYK57_01477 PF12848 ABC transporter CYK57_01478 PF02627 Carboxymuconolactone decarboxylase family CYK57_01481 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CYK57_01482 PF01722 BolA-like protein CYK57_01484 PF05494 MlaC protein CYK57_01485 PF02470 MlaD protein CYK57_01486 PF02405 Permease MlaE CYK57_01487 PF00005 ABC transporter CYK57_01488 PF00595 PDZ domain CYK57_01489 PF01370 NAD dependent epimerase/dehydratase family CYK57_01489 PF08338 Domain of unknown function (DUF1731) CYK57_01490 PF02863 Arginine repressor, C-terminal domain CYK57_01490 PF01316 Arginine repressor, DNA binding domain CYK57_01491 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CYK57_01491 PF00056 lactate/malate dehydrogenase, NAD binding domain CYK57_01493 PF05191 Adenylate kinase, active site lid CYK57_01495 PF07690 Major Facilitator Superfamily CYK57_01496 PF01370 NAD dependent epimerase/dehydratase family CYK57_01497 PF00533 BRCA1 C Terminus (BRCT) domain CYK57_01497 PF03120 NAD-dependent DNA ligase OB-fold domain CYK57_01497 PF12826 Helix-hairpin-helix motif CYK57_01497 PF01653 NAD-dependent DNA ligase adenylation domain CYK57_01497 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CYK57_01498 PF04354 ZipA, C-terminal FtsZ-binding domain CYK57_01501 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CYK57_01501 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CYK57_01503 PF17761 DUF1016 N-terminal domain CYK57_01503 PF06250 YhcG PDDEXK nuclease domain CYK57_01505 PF07690 Major Facilitator Superfamily CYK57_01506 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CYK57_01507 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CYK57_01507 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CYK57_01508 PF00459 Inositol monophosphatase family CYK57_01509 PF00293 NUDIX domain CYK57_01510 PF01479 S4 domain CYK57_01511 PF01430 Hsp33 protein CYK57_01512 PF03605 Anaerobic c4-dicarboxylate membrane transporter CYK57_01514 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CYK57_01514 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CYK57_01515 PF00696 Amino acid kinase family CYK57_01516 PF00367 phosphotransferase system, EIIB CYK57_01516 PF02378 Phosphotransferase system, EIIC CYK57_01517 PF00005 ABC transporter CYK57_01518 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01519 PF00381 PTS HPr component phosphorylation site CYK57_01520 PF05524 PEP-utilising enzyme, N-terminal CYK57_01520 PF02896 PEP-utilising enzyme, TIM barrel domain CYK57_01520 PF00391 PEP-utilising enzyme, mobile domain CYK57_01521 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CYK57_01522 PF04055 Radical SAM superfamily CYK57_01522 PF01938 TRAM domain CYK57_01522 PF00919 Uncharacterized protein family UPF0004 CYK57_01523 PF13361 UvrD-like helicase C-terminal domain CYK57_01523 PF00580 UvrD/REP helicase N-terminal domain CYK57_01525 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYK57_01526 PF01924 Hydrogenase formation hypA family CYK57_01527 PF00586 AIR synthase related protein, N-terminal domain CYK57_01527 PF02769 AIR synthase related protein, C-terminal domain CYK57_01528 PF17788 HypF Kae1-like domain CYK57_01528 PF01300 Telomere recombination CYK57_01528 PF07503 HypF finger CYK57_01528 PF00708 Acylphosphatase CYK57_01529 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CYK57_01529 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CYK57_01530 PF13247 4Fe-4S dicluster domain CYK57_01531 PF03916 Polysulphide reductase, NrfD CYK57_01532 PF00374 Nickel-dependent hydrogenase CYK57_01533 PF01750 Hydrogenase maturation protease CYK57_01535 PF01455 HupF/HypC family CYK57_01536 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CYK57_01543 PF02559 CarD-like/TRCF domain CYK57_01543 PF00270 DEAD/DEAH box helicase CYK57_01543 PF00271 Helicase conserved C-terminal domain CYK57_01543 PF03461 TRCF domain CYK57_01543 PF17757 UvrB interaction domain CYK57_01544 PF11940 Domain of unknown function (DUF3458) Ig-like fold CYK57_01544 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CYK57_01544 PF01433 Peptidase family M1 domain CYK57_01545 PF02660 Glycerol-3-phosphate acyltransferase CYK57_01546 PF02152 Dihydroneopterin aldolase CYK57_01547 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CYK57_01547 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CYK57_01548 PF18075 FtsX extracellular domain CYK57_01549 PF00005 ABC transporter CYK57_01550 PF00448 SRP54-type protein, GTPase domain CYK57_01550 PF02881 SRP54-type protein, helical bundle domain CYK57_01552 PF04269 Protein of unknown function, DUF440 CYK57_01553 PF01613 Flavin reductase like domain CYK57_01554 PF03848 Tellurite resistance protein TehB CYK57_01554 PF09313 Domain of unknown function (DUF1971) CYK57_01555 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01556 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01557 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYK57_01558 PF00005 ABC transporter CYK57_01559 PF01161 Phosphatidylethanolamine-binding protein CYK57_01560 PF01699 Sodium/calcium exchanger protein CYK57_01561 PF01381 Helix-turn-helix CYK57_01563 PF11412 Disulphide bond corrector protein DsbC CYK57_01563 PF13098 Thioredoxin-like domain CYK57_01563 PF02683 Cytochrome C biogenesis protein transmembrane region CYK57_01564 PF04315 Elongation factor P hydroxylase CYK57_01565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CYK57_01566 PF04348 LppC putative lipoprotein CYK57_01567 PF02021 Uncharacterised protein family UPF0102 CYK57_01568 PF13580 SIS domain CYK57_01569 PF04972 BON domain CYK57_01571 PF01464 Transglycosylase SLT domain CYK57_01571 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYK57_01575 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CYK57_01575 PF01578 Cytochrome C assembly protein CYK57_01576 PF03100 CcmE CYK57_01577 PF04995 Heme exporter protein D (CcmD) CYK57_01578 PF01578 Cytochrome C assembly protein CYK57_01579 PF03379 CcmB protein CYK57_01580 PF00005 ABC transporter CYK57_01581 PF00308 Bacterial dnaA protein CYK57_01588 PF04277 Oxaloacetate decarboxylase, gamma chain CYK57_01589 PF00364 Biotin-requiring enzyme CYK57_01589 PF02436 Conserved carboxylase domain CYK57_01589 PF00682 HMGL-like CYK57_01590 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CYK57_01591 PF03831 PhnA domain CYK57_01591 PF08274 PhnA Zinc-Ribbon CYK57_01592 PF03150 Di-haem cytochrome c peroxidase CYK57_01592 PF00034 Cytochrome c CYK57_01592 PF14376 Haem-binding domain CYK57_01593 PF02594 Uncharacterised ACR, YggU family COG1872 CYK57_01594 PF02325 YGGT family CYK57_01595 PF04320 Protein with unknown function (DUF469) CYK57_01596 PF02390 Putative methyltransferase CYK57_01597 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CYK57_01597 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CYK57_01598 PF02504 Fatty acid synthesis protein CYK57_01599 PF01783 Ribosomal L32p protein family CYK57_01600 PF02620 Large ribosomal RNA subunit accumulation protein YceD CYK57_01601 PF01578 Cytochrome C assembly protein CYK57_01602 PF00571 CBS domain CYK57_01602 PF03471 Transporter associated domain CYK57_01602 PF01595 Cyclin M transmembrane N-terminal domain CYK57_01603 PF00209 Sodium:neurotransmitter symporter family CYK57_01604 PF03610 PTS system fructose IIA component CYK57_01604 PF03830 PTS system sorbose subfamily IIB component CYK57_01605 PF03609 PTS system sorbose-specific iic component CYK57_01606 PF03613 PTS system mannose/fructose/sorbose family IID component CYK57_01607 PF06173 Protein of unknown function (DUF986) CYK57_01608 PF01238 Phosphomannose isomerase type I CYK57_01611 PF00009 Elongation factor Tu GTP binding domain CYK57_01611 PF03143 Elongation factor Tu C-terminal domain CYK57_01611 PF03144 Elongation factor Tu domain 2 CYK57_01612 PF00679 Elongation factor G C-terminus CYK57_01612 PF14492 Elongation Factor G, domain II CYK57_01612 PF03764 Elongation factor G, domain IV CYK57_01612 PF00009 Elongation factor Tu GTP binding domain CYK57_01612 PF03144 Elongation factor Tu domain 2 CYK57_01613 PF00177 Ribosomal protein S7p/S5e CYK57_01614 PF00164 Ribosomal protein S12/S23 CYK57_01615 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CYK57_01616 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CYK57_01618 PF04225 Opacity-associated protein A LysM-like domain CYK57_01618 PF08525 Opacity-associated protein A N-terminal motif CYK57_01620 PF02666 Phosphatidylserine decarboxylase CYK57_01621 PF02655 ATP-grasp domain CYK57_01621 PF04262 Glutamate-cysteine ligase CYK57_01621 PF18419 ATP-grasp-like domain CYK57_01623 PF03222 Tryptophan/tyrosine permease family CYK57_01624 PF04175 Protein of unknown function (DUF406) CYK57_01625 PF00248 Aldo/keto reductase family CYK57_01626 PF00501 AMP-binding enzyme CYK57_01628 PF06039 Malate:quinone oxidoreductase (Mqo) CYK57_01632 PF02653 Branched-chain amino acid transport system / permease component CYK57_01633 PF00005 ABC transporter CYK57_01634 PF13407 Periplasmic binding protein domain CYK57_01635 PF00691 OmpA family CYK57_01635 PF01389 OmpA-like transmembrane domain CYK57_01636 PF02913 FAD linked oxidases, C-terminal domain CYK57_01636 PF01565 FAD binding domain CYK57_01636 PF13183 4Fe-4S dicluster domain CYK57_01637 PF03061 Thioesterase superfamily CYK57_01638 PF14849 YidC periplasmic domain CYK57_01638 PF02096 60Kd inner membrane protein CYK57_01639 PF03264 NapC/NirT cytochrome c family, N-terminal region CYK57_01640 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CYK57_01641 PF12837 4Fe-4S binding domain CYK57_01641 PF12801 4Fe-4S binding domain CYK57_01642 PF12800 4Fe-4S binding domain CYK57_01642 PF12838 4Fe-4S dicluster domain CYK57_01643 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CYK57_01643 PF00384 Molybdopterin oxidoreductase CYK57_01643 PF10518 TAT (twin-arginine translocation) pathway signal sequence CYK57_01643 PF01568 Molydopterin dinucleotide binding domain CYK57_01645 PF12838 4Fe-4S dicluster domain CYK57_01645 PF13187 4Fe-4S dicluster domain CYK57_01646 PF02525 Flavodoxin-like fold CYK57_01647 PF00665 Integrase core domain CYK57_01647 PF13333 Integrase core domain CYK57_01650 PF10150 Ribonuclease E/G family CYK57_01650 PF00575 S1 RNA binding domain CYK57_01650 PF12111 Polyribonucleotide phosphorylase C terminal CYK57_01652 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CYK57_01653 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CYK57_01654 PF01297 Zinc-uptake complex component A periplasmic CYK57_01657 PF00664 ABC transporter transmembrane region CYK57_01657 PF00005 ABC transporter CYK57_01657 PF03412 Peptidase C39 family CYK57_01658 PF02382 N-terminal domain in RTX protein CYK57_01658 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CYK57_01658 PF08339 RTX C-terminal domain CYK57_01659 PF02794 RTX toxin acyltransferase family CYK57_01661 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01662 PF00005 ABC transporter CYK57_01662 PF08402 TOBE domain CYK57_01663 PF01225 Mur ligase family, catalytic domain CYK57_01663 PF02875 Mur ligase family, glutamate ligase domain CYK57_01663 PF08245 Mur ligase middle domain CYK57_01664 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CYK57_01666 PF08534 Redoxin CYK57_01666 PF00462 Glutaredoxin CYK57_01667 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_01667 PF03466 LysR substrate binding domain CYK57_01668 PF00440 Bacterial regulatory proteins, tetR family CYK57_01669 PF00578 AhpC/TSA family CYK57_01670 PF17876 Cold shock domain CYK57_01670 PF08461 Ribonuclease R winged-helix domain CYK57_01670 PF08206 Ribonuclease B OB domain CYK57_01670 PF00773 RNB domain CYK57_01670 PF00575 S1 RNA binding domain CYK57_01672 PF01479 S4 domain CYK57_01672 PF00579 tRNA synthetases class I (W and Y) CYK57_01674 PF04546 Sigma-70, non-essential region CYK57_01674 PF03979 Sigma-70 factor, region 1.1 CYK57_01674 PF00140 Sigma-70 factor, region 1.2 CYK57_01674 PF04542 Sigma-70 region 2 CYK57_01674 PF04539 Sigma-70 region 3 CYK57_01674 PF04545 Sigma-70, region 4 CYK57_01675 PF10410 DnaB-helicase binding domain of primase CYK57_01675 PF08278 DNA primase DnaG DnaB-binding CYK57_01675 PF01807 CHC2 zinc finger CYK57_01675 PF08275 DNA primase catalytic core, N-terminal domain CYK57_01676 PF01165 Ribosomal protein S21 CYK57_01677 PF16363 GDP-mannose 4,6 dehydratase CYK57_01678 PF02397 Bacterial sugar transferase CYK57_01680 PF00795 Carbon-nitrogen hydrolase CYK57_01680 PF00535 Glycosyl transferase family 2 CYK57_01682 PF03275 UDP-galactopyranose mutase CYK57_01683 PF01501 Glycosyl transferase family 8 CYK57_01683 PF00535 Glycosyl transferase family 2 CYK57_01685 PF00005 ABC transporter CYK57_01686 PF01061 ABC-2 type transporter CYK57_01687 PF01521 Iron-sulphur cluster biosynthesis CYK57_01688 PF01040 UbiA prenyltransferase family CYK57_01689 PF06250 YhcG PDDEXK nuclease domain CYK57_01689 PF17761 DUF1016 N-terminal domain CYK57_01690 PF01980 tRNA-methyltransferase O CYK57_01690 PF18389 TrmO C-terminal domain CYK57_01692 PF00230 Major intrinsic protein CYK57_01695 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYK57_01696 PF00291 Pyridoxal-phosphate dependent enzyme CYK57_01696 PF00585 C-terminal regulatory domain of Threonine dehydratase CYK57_01697 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CYK57_01697 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CYK57_01697 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CYK57_01697 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CYK57_01698 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CYK57_01699 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYK57_01699 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYK57_01702 PF08543 Phosphomethylpyrimidine kinase CYK57_01704 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CYK57_01706 PF07731 Multicopper oxidase CYK57_01706 PF07732 Multicopper oxidase CYK57_01707 PF01553 Acyltransferase CYK57_01708 PF08534 Redoxin CYK57_01709 PF10396 GTP-binding protein TrmE N-terminus CYK57_01709 PF12631 MnmE helical domain CYK57_01709 PF01926 50S ribosome-binding GTPase CYK57_01710 PF05167 Uncharacterised ACR (DUF711) CYK57_01712 PF17954 Quercetinase C-terminal cupin domain CYK57_01712 PF02678 Pirin CYK57_01713 PF00210 Ferritin-like domain CYK57_01716 PF12805 FUSC-like inner membrane protein yccS CYK57_01717 PF02142 MGS-like domain CYK57_01718 PF14821 Threonine synthase N terminus CYK57_01718 PF00291 Pyridoxal-phosphate dependent enzyme CYK57_01720 PF13333 Integrase core domain CYK57_01720 PF00665 Integrase core domain CYK57_01721 PF10458 Valyl tRNA synthetase tRNA binding arm CYK57_01721 PF00133 tRNA synthetases class I (I, L, M and V) CYK57_01721 PF08264 Anticodon-binding domain of tRNA CYK57_01723 PF13673 Acetyltransferase (GNAT) domain CYK57_01724 PF04364 DNA polymerase III chi subunit, HolC CYK57_01725 PF01476 LysM domain CYK57_01726 PF05697 Bacterial trigger factor protein (TF) CYK57_01726 PF05698 Bacterial trigger factor protein (TF) C-terminus CYK57_01726 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYK57_01727 PF00581 Rhodanese-like domain CYK57_01728 PF02556 Preprotein translocase subunit SecB CYK57_01729 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CYK57_01729 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CYK57_01730 PF00132 Bacterial transferase hexapeptide (six repeats) CYK57_01730 PF06426 Serine acetyltransferase, N-terminal CYK57_01731 PF03143 Elongation factor Tu C-terminal domain CYK57_01731 PF03144 Elongation factor Tu domain 2 CYK57_01731 PF00009 Elongation factor Tu GTP binding domain CYK57_01736 PF00485 Phosphoribulokinase / Uridine kinase family CYK57_01737 PF08534 Redoxin CYK57_01738 PF03918 Cytochrome C biogenesis protein CYK57_01739 PF03918 Cytochrome C biogenesis protein CYK57_01740 PF00994 Probable molybdopterin binding domain CYK57_01741 PF00543 Nitrogen regulatory protein P-II CYK57_01742 PF01252 Signal peptidase (SPase) II CYK57_01743 PF02401 LytB protein CYK57_01744 PF03937 Flavinator of succinate dehydrogenase CYK57_01746 PF04055 Radical SAM superfamily CYK57_01747 PF02798 Glutathione S-transferase, N-terminal domain CYK57_01747 PF00043 Glutathione S-transferase, C-terminal domain CYK57_01748 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CYK57_01748 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CYK57_01750 PF02313 Fumarate reductase subunit D CYK57_01751 PF02300 Fumarate reductase subunit C CYK57_01752 PF13183 4Fe-4S dicluster domain CYK57_01752 PF13085 2Fe-2S iron-sulfur cluster binding domain CYK57_01753 PF02910 Fumarate reductase flavoprotein C-term CYK57_01753 PF00890 FAD binding domain CYK57_01754 PF00152 tRNA synthetases class II (D, K and N) CYK57_01756 PF01678 Diaminopimelate epimerase CYK57_01757 PF03605 Anaerobic c4-dicarboxylate membrane transporter CYK57_01758 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CYK57_01760 PF03702 Anhydro-N-acetylmuramic acid kinase CYK57_01761 PF01380 SIS domain CYK57_01765 PF01523 Putative modulator of DNA gyrase CYK57_01766 PF01171 PP-loop family CYK57_01766 PF11734 TilS substrate C-terminal domain CYK57_01766 PF09179 TilS substrate binding domain CYK57_01768 PF00589 Phage integrase family CYK57_01768 PF02899 Phage integrase, N-terminal SAM-like domain CYK57_01779 PF03808 Glycosyl transferase WecB/TagA/CpsF family CYK57_01780 PF06899 WzyE protein, O-antigen assembly polymerase CYK57_01781 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CYK57_01782 PF03063 Prismane/CO dehydrogenase family CYK57_01783 PF00111 2Fe-2S iron-sulfur cluster binding domain CYK57_01783 PF00175 Oxidoreductase NAD-binding domain CYK57_01783 PF00970 Oxidoreductase FAD-binding domain CYK57_01784 PF01943 Polysaccharide biosynthesis protein CYK57_01785 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CYK57_01787 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CYK57_01787 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CYK57_01787 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CYK57_01788 PF02350 UDP-N-acetylglucosamine 2-epimerase CYK57_01790 PF00953 Glycosyl transferase family 4 CYK57_01791 PF00202 Aminotransferase class-III CYK57_01793 PF03023 Lipid II flippase MurJ CYK57_01794 PF01649 Ribosomal protein S20 CYK57_01795 PF02254 TrkA-N domain CYK57_01795 PF02080 TrkA-C domain CYK57_01796 PF01189 16S rRNA methyltransferase RsmB/F CYK57_01796 PF01029 NusB family CYK57_01797 PF09107 Elongation factor SelB, winged helix CYK57_01797 PF09106 Elongation factor SelB, winged helix CYK57_01797 PF03144 Elongation factor Tu domain 2 CYK57_01797 PF00009 Elongation factor Tu GTP binding domain CYK57_01798 PF03841 L-seryl-tRNA selenium transferase CYK57_01800 PF00258 Flavodoxin CYK57_01801 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYK57_01801 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYK57_01805 PF00593 TonB dependent receptor CYK57_01805 PF07715 TonB-dependent Receptor Plug Domain CYK57_01806 PF17484 N-Lobe handle Tf-binding protein B CYK57_01806 PF17483 C-lobe handle domain of Tf-binding protein B CYK57_01806 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B CYK57_01807 PF02472 Biopolymer transport protein ExbD/TolR CYK57_01808 PF01618 MotA/TolQ/ExbB proton channel family CYK57_01810 PF03956 Lysine exporter LysO CYK57_01811 PF02615 Malate/L-lactate dehydrogenase CYK57_01812 PF02615 Malate/L-lactate dehydrogenase CYK57_01813 PF06821 Serine hydrolase CYK57_01814 PF17311 Family of unknown function (DUF5358) CYK57_01815 PF00571 CBS domain CYK57_01815 PF01380 SIS domain CYK57_01816 PF02348 Cytidylyltransferase CYK57_01817 PF00793 DAHP synthetase I family CYK57_01821 PF02563 Polysaccharide biosynthesis/export protein CYK57_01823 PF01061 ABC-2 type transporter CYK57_01824 PF00005 ABC transporter CYK57_01825 PF00005 ABC transporter CYK57_01826 PF02911 Formyl transferase, C-terminal domain CYK57_01826 PF00551 Formyl transferase CYK57_01828 PF09186 Domain of unknown function (DUF1949) CYK57_01828 PF01205 Uncharacterized protein family UPF0029 CYK57_01829 PF02386 Cation transport protein CYK57_01830 PF12724 Flavodoxin domain CYK57_01831 PF01741 Large-conductance mechanosensitive channel, MscL CYK57_01832 PF04055 Radical SAM superfamily CYK57_01833 PF03099 Biotin/lipoate A/B protein ligase family CYK57_01834 PF04359 Protein of unknown function (DUF493) CYK57_01835 PF07943 Penicillin-binding protein 5, C-terminal domain CYK57_01835 PF00768 D-alanyl-D-alanine carboxypeptidase CYK57_01836 PF03330 Lytic transglycolase CYK57_01837 PF01098 Cell cycle protein CYK57_01838 PF03717 Penicillin-binding Protein dimerisation domain CYK57_01838 PF00905 Penicillin binding protein transpeptidase domain CYK57_01839 PF02590 Predicted SPOUT methyltransferase CYK57_01841 PF01624 MutS domain I CYK57_01841 PF05188 MutS domain II CYK57_01841 PF05192 MutS domain III CYK57_01841 PF05190 MutS family domain IV CYK57_01841 PF00488 MutS domain V CYK57_01842 PF00005 ABC transporter CYK57_01843 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01844 PF03313 Serine dehydratase alpha chain CYK57_01845 PF01814 Hemerythrin HHE cation binding domain CYK57_01845 PF04405 Domain of Unknown function (DUF542) CYK57_01846 PF00893 Small Multidrug Resistance protein CYK57_01847 PF04175 Protein of unknown function (DUF406) CYK57_01850 PF01774 UreD urease accessory protein CYK57_01851 PF02492 CobW/HypB/UreG, nucleotide-binding domain CYK57_01852 PF01730 UreF CYK57_01853 PF05194 UreE urease accessory protein, C-terminal domain CYK57_01853 PF02814 UreE urease accessory protein, N-terminal domain CYK57_01855 PF01979 Amidohydrolase family CYK57_01855 PF00449 Urease alpha-subunit, N-terminal domain CYK57_01856 PF00699 Urease beta subunit CYK57_01857 PF00547 Urease, gamma subunit CYK57_01859 PF00005 ABC transporter CYK57_01861 PF01891 Cobalt uptake substrate-specific transmembrane region CYK57_01863 PF10670 Domain of unknown function (DUF4198) CYK57_01864 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_01864 PF03466 LysR substrate binding domain CYK57_01866 PF02080 TrkA-C domain CYK57_01866 PF03600 Citrate transporter CYK57_01867 PF05068 Mannitol repressor CYK57_01868 PF08125 Mannitol dehydrogenase C-terminal domain CYK57_01868 PF01232 Mannitol dehydrogenase Rossmann domain CYK57_01869 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CYK57_01869 PF02378 Phosphotransferase system, EIIC CYK57_01869 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CYK57_01870 PF01380 SIS domain CYK57_01871 PF08220 DeoR-like helix-turn-helix domain CYK57_01871 PF00455 DeoR C terminal sensor domain CYK57_01874 PF18071 HMW1C N-terminal CYK57_01874 PF18254 HMW1 domain 2 CYK57_01875 PF00919 Uncharacterized protein family UPF0004 CYK57_01875 PF18693 TRAM domain CYK57_01875 PF04055 Radical SAM superfamily CYK57_01876 PF01048 Phosphorylase superfamily CYK57_01878 PF04102 SlyX CYK57_01879 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYK57_01879 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CYK57_01880 PF13309 HTH domain CYK57_01880 PF08348 YheO-like PAS domain CYK57_01881 PF02635 DsrE/DsrF-like family CYK57_01882 PF02635 DsrE/DsrF-like family CYK57_01883 PF04077 DsrH like protein CYK57_01889 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CYK57_01890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYK57_01890 PF02874 ATP synthase alpha/beta family, beta-barrel domain CYK57_01891 PF00231 ATP synthase CYK57_01892 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CYK57_01892 PF00306 ATP synthase alpha/beta chain, C terminal domain CYK57_01892 PF02874 ATP synthase alpha/beta family, beta-barrel domain CYK57_01893 PF00213 ATP synthase delta (OSCP) subunit CYK57_01894 PF00430 ATP synthase B/B' CF(0) CYK57_01895 PF00137 ATP synthase subunit C CYK57_01896 PF00119 ATP synthase A chain CYK57_01898 PF02527 rRNA small subunit methyltransferase G CYK57_01899 PF01134 Glucose inhibited division protein A CYK57_01899 PF13932 GidA associated domain CYK57_01901 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYK57_01902 PF02810 SEC-C motif CYK57_01904 PF03613 PTS system mannose/fructose/sorbose family IID component CYK57_01905 PF03609 PTS system sorbose-specific iic component CYK57_01906 PF03830 PTS system sorbose subfamily IIB component CYK57_01906 PF03610 PTS system fructose IIA component CYK57_01907 PF13333 Integrase core domain CYK57_01907 PF00665 Integrase core domain CYK57_01909 PF02447 GntP family permease CYK57_01910 PF01202 Shikimate kinase CYK57_01911 PF00356 Bacterial regulatory proteins, lacI family CYK57_01911 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CYK57_01912 PF00356 Bacterial regulatory proteins, lacI family CYK57_01913 PF05025 RbsD / FucU transport protein family CYK57_01914 PF00005 ABC transporter CYK57_01915 PF02653 Branched-chain amino acid transport system / permease component CYK57_01916 PF13407 Periplasmic binding protein domain CYK57_01917 PF00294 pfkB family carbohydrate kinase CYK57_01918 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CYK57_01918 PF00384 Molybdopterin oxidoreductase CYK57_01918 PF01568 Molydopterin dinucleotide binding domain CYK57_01919 PF13247 4Fe-4S dicluster domain CYK57_01919 PF12800 4Fe-4S binding domain CYK57_01920 PF04976 DMSO reductase anchor subunit (DmsC) CYK57_01921 PF02613 Nitrate reductase delta subunit CYK57_01922 PF00037 4Fe-4S binding domain CYK57_01922 PF12838 4Fe-4S dicluster domain CYK57_01926 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CYK57_01926 PF02769 AIR synthase related protein, C-terminal domain CYK57_01926 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CYK57_01927 PF08220 DeoR-like helix-turn-helix domain CYK57_01927 PF00455 DeoR C terminal sensor domain CYK57_01929 PF07881 L-fucose isomerase, first N-terminal domain CYK57_01929 PF07882 L-fucose isomerase, second N-terminal domain CYK57_01929 PF02952 L-fucose isomerase, C-terminal domain CYK57_01930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYK57_01930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYK57_01931 PF05025 RbsD / FucU transport protein family CYK57_01932 PF00596 Class II Aldolase and Adducin N-terminal domain CYK57_01933 PF07690 Major Facilitator Superfamily CYK57_01934 PF00465 Iron-containing alcohol dehydrogenase CYK57_01935 PF07274 Protein of unknown function (DUF1440) CYK57_01936 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01937 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_01938 PF00005 ABC transporter CYK57_01939 PF00497 Bacterial extracellular solute-binding proteins, family 3 CYK57_01940 PF05159 Capsule polysaccharide biosynthesis protein CYK57_01941 PF05159 Capsule polysaccharide biosynthesis protein CYK57_01943 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CYK57_01944 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CYK57_01945 PF03611 PTS system sugar-specific permease component CYK57_01947 PF00455 DeoR C terminal sensor domain CYK57_01947 PF08220 DeoR-like helix-turn-helix domain CYK57_01948 PF01261 Xylose isomerase-like TIM barrel CYK57_01949 PF00596 Class II Aldolase and Adducin N-terminal domain CYK57_01951 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CYK57_01951 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CYK57_01955 PF04575 Protein of unknown function (DUF560) CYK57_01957 PF01370 NAD dependent epimerase/dehydratase family CYK57_01958 PF01327 Polypeptide deformylase CYK57_01959 PF02481 DNA recombination-mediator protein A CYK57_01959 PF17782 DprA winged helix domain CYK57_01960 PF03169 OPT oligopeptide transporter protein CYK57_01961 PF03611 PTS system sugar-specific permease component CYK57_01964 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CYK57_01965 PF02357 Transcription termination factor nusG CYK57_01965 PF00467 KOW motif CYK57_01966 PF00298 Ribosomal protein L11, RNA binding domain CYK57_01966 PF03946 Ribosomal protein L11, N-terminal domain CYK57_01967 PF00687 Ribosomal protein L1p/L10e family CYK57_01968 PF00466 Ribosomal protein L10 CYK57_01969 PF00542 Ribosomal protein L7/L12 C-terminal domain CYK57_01969 PF16320 Ribosomal protein L7/L12 dimerisation domain CYK57_01978 PF04563 RNA polymerase beta subunit CYK57_01978 PF04561 RNA polymerase Rpb2, domain 2 CYK57_01978 PF04565 RNA polymerase Rpb2, domain 3 CYK57_01978 PF10385 RNA polymerase beta subunit external 1 domain CYK57_01978 PF00562 RNA polymerase Rpb2, domain 6 CYK57_01978 PF04560 RNA polymerase Rpb2, domain 7 CYK57_01979 PF04997 RNA polymerase Rpb1, domain 1 CYK57_01979 PF00623 RNA polymerase Rpb1, domain 2 CYK57_01979 PF04983 RNA polymerase Rpb1, domain 3 CYK57_01979 PF05000 RNA polymerase Rpb1, domain 4 CYK57_01979 PF04998 RNA polymerase Rpb1, domain 5 CYK57_01981 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CYK57_01982 PF01850 PIN domain CYK57_01986 PF07724 AAA domain (Cdc48 subfamily) CYK57_01986 PF10431 C-terminal, D2-small domain, of ClpB protein CYK57_01986 PF00004 ATPase family associated with various cellular activities (AAA) CYK57_01987 PF00227 Proteasome subunit CYK57_01988 PF17746 SfsA N-terminal OB domain CYK57_01988 PF03749 Sugar fermentation stimulation protein RE domain CYK57_01989 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CYK57_01990 PF00730 HhH-GPD superfamily base excision DNA repair protein CYK57_01990 PF14815 NUDIX domain CYK57_01991 PF04362 Bacterial Fe(2+) trafficking CYK57_01992 PF01464 Transglycosylase SLT domain CYK57_01992 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CYK57_01997 PF02978 Signal peptide binding domain CYK57_01997 PF00448 SRP54-type protein, GTPase domain CYK57_01997 PF02881 SRP54-type protein, helical bundle domain CYK57_01998 PF02872 5'-nucleotidase, C-terminal domain CYK57_01998 PF00149 Calcineurin-like phosphoesterase CYK57_01999 PF01494 FAD binding domain CYK57_02000 PF01381 Helix-turn-helix CYK57_02001 PF05973 Phage derived protein Gp49-like (DUF891) CYK57_02002 PF01078 Magnesium chelatase, subunit ChlI CYK57_02002 PF13335 Magnesium chelatase, subunit ChlI C-terminal CYK57_02004 PF00561 alpha/beta hydrolase fold CYK57_02005 PF16582 Middle domain of thiamine pyrophosphate CYK57_02005 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CYK57_02005 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CYK57_02006 PF02348 Cytidylyltransferase CYK57_02006 PF13472 GDSL-like Lipase/Acylhydrolase family CYK57_02007 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CYK57_02008 PF00480 ROK family CYK57_02009 PF00701 Dihydrodipicolinate synthetase family CYK57_02010 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CYK57_02011 PF01979 Amidohydrolase family CYK57_02013 PF10415 Fumarase C C-terminus CYK57_02013 PF00206 Lyase CYK57_02016 PF00338 Ribosomal protein S10p/S20e CYK57_02017 PF00297 Ribosomal protein L3 CYK57_02018 PF00573 Ribosomal protein L4/L1 family CYK57_02019 PF00276 Ribosomal protein L23 CYK57_02020 PF00181 Ribosomal Proteins L2, RNA binding domain CYK57_02020 PF03947 Ribosomal Proteins L2, C-terminal domain CYK57_02021 PF00203 Ribosomal protein S19 CYK57_02022 PF00237 Ribosomal protein L22p/L17e CYK57_02023 PF00189 Ribosomal protein S3, C-terminal domain CYK57_02023 PF07650 KH domain CYK57_02024 PF00252 Ribosomal protein L16p/L10e CYK57_02025 PF00831 Ribosomal L29 protein CYK57_02026 PF00366 Ribosomal protein S17 CYK57_02027 PF00238 Ribosomal protein L14p/L23e CYK57_02028 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CYK57_02028 PF00467 KOW motif CYK57_02029 PF00673 ribosomal L5P family C-terminus CYK57_02029 PF00281 Ribosomal protein L5 CYK57_02030 PF00253 Ribosomal protein S14p/S29e CYK57_02031 PF00410 Ribosomal protein S8 CYK57_02032 PF00347 Ribosomal protein L6 CYK57_02033 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CYK57_02034 PF00333 Ribosomal protein S5, N-terminal domain CYK57_02034 PF03719 Ribosomal protein S5, C-terminal domain CYK57_02035 PF00327 Ribosomal protein L30p/L7e CYK57_02036 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CYK57_02037 PF00344 SecY translocase CYK57_02038 PF00444 Ribosomal protein L36 CYK57_02039 PF00416 Ribosomal protein S13/S18 CYK57_02040 PF00411 Ribosomal protein S11 CYK57_02041 PF00163 Ribosomal protein S4/S9 N-terminal domain CYK57_02041 PF01479 S4 domain CYK57_02042 PF01000 RNA polymerase Rpb3/RpoA insert domain CYK57_02042 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CYK57_02042 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CYK57_02043 PF01196 Ribosomal protein L17 CYK57_02044 PF00886 Ribosomal protein S16 CYK57_02045 PF05239 PRC-barrel domain CYK57_02045 PF01782 RimM N-terminal domain CYK57_02046 PF01746 tRNA (Guanine-1)-methyltransferase CYK57_02047 PF01245 Ribosomal protein L19 CYK57_02048 PF08007 Cupin superfamily protein CYK57_02049 PF01497 Periplasmic binding protein CYK57_02050 PF01032 FecCD transport family CYK57_02051 PF00005 ABC transporter CYK57_02052 PF00127 Copper binding proteins, plastocyanin/azurin family CYK57_02055 PF02613 Nitrate reductase delta subunit CYK57_02056 PF00384 Molybdopterin oxidoreductase CYK57_02056 PF18364 Molybdopterin oxidoreductase N-terminal domain CYK57_02056 PF01568 Molydopterin dinucleotide binding domain CYK57_02058 PF02091 Glycyl-tRNA synthetase alpha subunit CYK57_02059 PF04480 Protein of unknown function (DUF559) CYK57_02061 PF05746 DALR anticodon binding domain CYK57_02061 PF02092 Glycyl-tRNA synthetase beta subunit CYK57_02062 PF17347 Family of unknown function (DUF5377) CYK57_02063 PF00589 Phage integrase family CYK57_02063 PF02899 Phage integrase, N-terminal SAM-like domain CYK57_02064 PF04304 Protein of unknown function (DUF454) CYK57_02066 PF00149 Calcineurin-like phosphoesterase CYK57_02067 PF07509 Protein of unknown function (DUF1523) CYK57_02068 PF01026 TatD related DNase CYK57_02070 PF00005 ABC transporter CYK57_02070 PF12704 MacB-like periplasmic core domain CYK57_02070 PF02687 FtsX-like permease family CYK57_02071 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CYK57_02072 PF06629 MltA-interacting protein MipA CYK57_02073 PF09115 DNA polymerase III, delta subunit, C terminal CYK57_02074 PF02223 Thymidylate kinase CYK57_02075 PF02618 YceG-like family CYK57_02079 PF00550 Phosphopantetheine attachment site CYK57_02080 PF00834 Ribulose-phosphate 3 epimerase family CYK57_02081 PF01197 Ribosomal protein L31 CYK57_02082 PF00444 Ribosomal protein L36 CYK57_02083 PF14814 Bifunctional transglycosylase second domain CYK57_02083 PF00905 Penicillin binding protein transpeptidase domain CYK57_02083 PF00912 Transglycosylase CYK57_02084 PF00378 Enoyl-CoA hydratase/isomerase CYK57_02085 PF02824 TGS domain CYK57_02085 PF04607 Region found in RelA / SpoT proteins CYK57_02085 PF13291 ACT domain CYK57_02086 PF01192 RNA polymerase Rpb6 CYK57_02087 PF00270 DEAD/DEAH box helicase CYK57_02087 PF00271 Helicase conserved C-terminal domain CYK57_02087 PF17191 RecG wedge domain CYK57_02090 PF04073 Aminoacyl-tRNA editing domain CYK57_02090 PF03129 Anticodon binding domain CYK57_02090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CYK57_02092 PF08281 Sigma-70, region 4 CYK57_02092 PF04542 Sigma-70 region 2 CYK57_02093 PF00174 Oxidoreductase molybdopterin binding domain CYK57_02094 PF01794 Ferric reductase like transmembrane component CYK57_02095 PF00140 Sigma-70 factor, region 1.2 CYK57_02095 PF04542 Sigma-70 region 2 CYK57_02095 PF04545 Sigma-70, region 4 CYK57_02096 PF07690 Major Facilitator Superfamily CYK57_02097 PF13356 Arm DNA-binding domain CYK57_02097 PF00589 Phage integrase family CYK57_02101 PF03616 Sodium/glutamate symporter CYK57_02106 PF02909 Tetracyclin repressor-like, C-terminal domain CYK57_02106 PF00440 Bacterial regulatory proteins, tetR family CYK57_02107 PF02909 Tetracyclin repressor-like, C-terminal domain CYK57_02107 PF00440 Bacterial regulatory proteins, tetR family CYK57_02108 PF07690 Major Facilitator Superfamily CYK57_02109 PF00440 Bacterial regulatory proteins, tetR family CYK57_02110 PF12833 Helix-turn-helix domain CYK57_02112 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CYK57_02112 PF17287 POTRA domain CYK57_02112 PF08479 POTRA domain, ShlB-type CYK57_02113 PF13018 Extended Signal Peptide of Type V secretion system CYK57_02113 PF13332 Hemagglutinin repeat CYK57_02113 PF05860 haemagglutination activity domain CYK57_02113 PF04829 Pre-toxin domain with VENN motif CYK57_02113 PF13018 Extended Signal Peptide of Type V secretion system CYK57_02113 PF05860 haemagglutination activity domain CYK57_02113 PF04829 Pre-toxin domain with VENN motif CYK57_02113 PF13332 Hemagglutinin repeat CYK57_02120 PF03590 Aspartate-ammonia ligase CYK57_02121 PF13404 AsnC-type helix-turn-helix domain CYK57_02121 PF01037 Lrp/AsnC ligand binding domain CYK57_02122 PF01048 Phosphorylase superfamily CYK57_02123 PF04345 Chorismate lyase CYK57_02124 PF01177 Asp/Glu/Hydantoin racemase CYK57_02130 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CYK57_02130 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CYK57_02131 PF00175 Oxidoreductase NAD-binding domain CYK57_02131 PF00258 Flavodoxin CYK57_02131 PF00667 FAD binding domain CYK57_02132 PF00009 Elongation factor Tu GTP binding domain CYK57_02134 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_02135 PF00528 Binding-protein-dependent transport system inner membrane component CYK57_02136 PF00005 ABC transporter CYK57_02136 PF12857 TOBE-like domain CYK57_02136 PF17850 CysA C-terminal regulatory domain CYK57_02137 PF01070 FMN-dependent dehydrogenase CYK57_02138 PF02237 Biotin protein ligase C terminal domain CYK57_02138 PF03099 Biotin/lipoate A/B protein ligase family CYK57_02138 PF08279 HTH domain CYK57_02139 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CYK57_02139 PF01565 FAD binding domain CYK57_02140 PF01389 OmpA-like transmembrane domain CYK57_02140 PF00691 OmpA family CYK57_02141 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CYK57_02141 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CYK57_02142 PF04403 Paraquat-inducible protein A CYK57_02143 PF01841 Transglutaminase-like superfamily CYK57_02145 PF00403 Heavy-metal-associated domain CYK57_02147 PF00465 Iron-containing alcohol dehydrogenase CYK57_02148 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CYK57_02148 PF03466 LysR substrate binding domain CYK57_02150 PF14602 Hexapeptide repeat of succinyl-transferase CYK57_02150 PF00132 Bacterial transferase hexapeptide (six repeats) CYK57_02150 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CYK57_02151 PF01220 Dehydroquinase class II CYK57_02152 PF04488 Glycosyltransferase sugar-binding region containing DXD motif CYK57_02153 PF00364 Biotin-requiring enzyme CYK57_02154 PF02785 Biotin carboxylase C-terminal domain CYK57_02154 PF00289 Biotin carboxylase, N-terminal domain CYK57_02154 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYK57_02155 PF12804 MobA-like NTP transferase domain CYK57_02156 PF06288 Protein of unknown function (DUF1040) CYK57_02157 PF01323 DSBA-like thioredoxin domain CYK57_02160 PF05036 Sporulation related domain CYK57_02160 PF05036 Sporulation related domain CYK57_02161 PF04445 Putative SAM-dependent methyltransferase CYK57_02162 PF02557 D-alanyl-D-alanine carboxypeptidase CYK57_02163 PF07687 Peptidase dimerisation domain CYK57_02163 PF01546 Peptidase family M20/M25/M40 CYK57_02164 PF03960 ArsC family CYK57_02166 PF00809 Pterin binding enzyme CYK57_02167 PF01479 S4 domain CYK57_02167 PF00849 RNA pseudouridylate synthase CYK57_02169 PF05552 Conserved TM helix CYK57_02169 PF00924 Mechanosensitive ion channel CYK57_02170 PF00289 Biotin carboxylase, N-terminal domain CYK57_02170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CYK57_02170 PF02785 Biotin carboxylase C-terminal domain CYK57_02172 PF05193 Peptidase M16 inactive domain CYK57_02172 PF16187 Middle or third domain of peptidase_M16 CYK57_02172 PF00675 Insulinase (Peptidase family M16) CYK57_02173 PF17946 RecC C-terminal domain CYK57_02178 PF07977 FabA-like domain CYK57_02179 PF13654 AAA domain CYK57_02179 PF05362 Lon protease (S16) C-terminal proteolytic domain CYK57_02180 PF06303 MatP N-terminal domain CYK57_02180 PF17414 MatP C-terminal ribbon-helix-helix domain CYK57_02181 PF00579 tRNA synthetases class I (W and Y) CYK57_02182 PF13419 Haloacid dehalogenase-like hydrolase CYK57_02184 PF01790 Prolipoprotein diacylglyceryl transferase CYK57_02185 PF01925 Sulfite exporter TauE/SafE CYK57_02186 PF00293 NUDIX domain CYK57_02190 PF00719 Inorganic pyrophosphatase CYK57_02191 PF05175 Methyltransferase small domain CYK57_02192 PF03737 Aldolase/RraA CYK57_02193 PF01226 Formate/nitrite transporter CYK57_02196 PF00684 DnaJ central domain CYK57_02196 PF00226 DnaJ domain CYK57_02196 PF01556 DnaJ C terminal domain CYK57_02197 PF00012 Hsp70 protein CYK57_02198 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CYK57_02198 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CYK57_02200 PF13407 Periplasmic binding protein domain CYK57_02201 PF00005 ABC transporter CYK57_02202 PF02653 Branched-chain amino acid transport system / permease component CYK57_02203 PF12833 Helix-turn-helix domain CYK57_02204 PF01431 Peptidase family M13 CYK57_02204 PF05649 Peptidase family M13 CYK57_02206 PF10571 Uncharacterised protein family UPF0547 CYK57_02207 PF00474 Sodium:solute symporter family CYK57_02208 PF06196 Protein of unknown function (DUF997) CYK57_02209 PF01340 Met Apo-repressor, MetJ CYK57_02210 PF04333 MlaA lipoprotein CYK57_02211 PF01263 Aldose 1-epimerase CYK57_02214 PF01522 Polysaccharide deacetylase CYK57_02214 PF14883 Hypothetical glycosyl hydrolase family 13 CYK57_02215 PF00535 Glycosyl transferase family 2 CYK57_02217 PF00121 Triosephosphate isomerase CYK57_02218 PF01142 tRNA pseudouridine synthase D (TruD) CYK57_02219 PF01975 Survival protein SurE CYK57_02220 PF09335 SNARE associated Golgi protein CYK57_02223 PF01551 Peptidase family M23 CYK57_02223 PF01476 LysM domain CYK57_02224 PF03352 Methyladenine glycosylase CYK57_02227 PF07670 Nucleoside recognition CYK57_02228 PF07670 Nucleoside recognition CYK57_02231 PF00762 Ferrochelatase CYK57_02232 PF00468 Ribosomal protein L34 CYK57_02233 PF00825 Ribonuclease P CYK57_02234 PF01809 Putative membrane protein insertion efficiency factor CYK57_02235 PF03951 Glutamine synthetase, beta-Grasp domain CYK57_02235 PF00120 Glutamine synthetase, catalytic domain CYK57_02236 PF00149 Calcineurin-like phosphoesterase CYK57_02237 PF00293 NUDIX domain CYK57_02238 PF06146 Phosphate-starvation-inducible E CYK57_02239 PF01648 4'-phosphopantetheinyl transferase superfamily CYK57_02240 PF00892 EamA-like transporter family CYK57_02241 PF06965 Na+/H+ antiporter 1 CYK57_02243 PF02580 D-Tyr-tRNA(Tyr) deacylase CYK57_02244 PF03631 Virulence factor BrkB CYK57_02245 PF00171 Aldehyde dehydrogenase family CYK57_02246 PF07715 TonB-dependent Receptor Plug Domain CYK57_02246 PF00593 TonB dependent receptor CYK57_02247 PF00593 TonB dependent receptor CYK57_02247 PF07715 TonB-dependent Receptor Plug Domain CYK57_02249 PF04886 PT repeat CYK57_02249 PF00593 TonB dependent receptor CYK57_02249 PF07715 TonB-dependent Receptor Plug Domain CYK57_02252 PF01119 DNA mismatch repair protein, C-terminal domain CYK57_02252 PF08676 MutL C terminal dimerisation domain CYK57_02253 PF00107 Zinc-binding dehydrogenase CYK57_02253 PF08240 Alcohol dehydrogenase GroES-like domain CYK57_02256 PF17209 Hfq protein CYK57_02257 PF16360 GTP-binding GTPase Middle Region CYK57_02257 PF01926 50S ribosome-binding GTPase CYK57_02257 PF13167 GTP-binding GTPase N-terminal CYK57_02258 PF03641 Possible lysine decarboxylase CYK57_02259 PF03819 MazG nucleotide pyrophosphohydrolase domain CYK57_02260 PF00027 Cyclic nucleotide-binding domain CYK57_02260 PF13545 Crp-like helix-turn-helix domain CYK57_02261 PF06794 Uncharacterised protein family (UPF0270) CYK57_02262 PF00440 Bacterial regulatory proteins, tetR family CYK57_02264 PF00692 dUTPase CYK57_02265 PF04127 DNA / pantothenate metabolism flavoprotein CYK57_02265 PF02441 Flavoprotein CYK57_02266 PF04002 RadC-like JAB domain CYK57_02267 PF00830 Ribosomal L28 family CYK57_02268 PF00471 Ribosomal protein L33 CYK57_02270 PF00202 Aminotransferase class-III CYK57_02271 PF00282 Pyridoxal-dependent decarboxylase conserved domain CYK57_02272 PF01206 Sulfurtransferase TusA CYK57_02273 PF04143 Sulphur transport CYK57_02274 PF04219 Protein of unknown function, DUF CYK57_02275 PF05958 tRNA (Uracil-5-)-methyltransferase CYK57_02279 PF01544 CorA-like Mg2+ transporter protein CYK57_02280 PF01209 ubiE/COQ5 methyltransferase family CYK57_02282 PF03109 ABC1 family CYK57_02283 PF02416 mttA/Hcf106 family CYK57_02285 PF00902 Sec-independent protein translocase protein (TatC) CYK57_02286 PF00490 Delta-aminolevulinic acid dehydratase CYK57_02288 PF06827 Zinc finger found in FPG and IleRS CYK57_02288 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CYK57_02288 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CYK57_02289 PF05525 Branched-chain amino acid transport protein CYK57_02291 PF00698 Acyl transferase domain CYK57_02292 PF02677 Epoxyqueuosine reductase QueH CYK57_02293 PF00348 Polyprenyl synthetase CYK57_02295 PF03358 NADPH-dependent FMN reductase CYK57_02296 PF07681 DoxX CYK57_02297 PF00829 Ribosomal prokaryotic L21 protein CYK57_02298 PF01016 Ribosomal L27 protein CYK57_02299 PF00892 EamA-like transporter family CYK57_02300 PF04575 Protein of unknown function (DUF560) CYK57_02301 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CYK57_02302 PF00156 Phosphoribosyl transferase domain CYK57_02303 PF08468 Methyltransferase small domain N-terminal CYK57_02303 PF05175 Methyltransferase small domain CYK57_02305 PF00583 Acetyltransferase (GNAT) family CYK57_02306 PF00271 Helicase conserved C-terminal domain CYK57_02306 PF00270 DEAD/DEAH box helicase CYK57_02307 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CYK57_02307 PF01243 Pyridoxamine 5'-phosphate oxidase CYK57_02308 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CYK57_02309 PF00171 Aldehyde dehydrogenase family CYK57_02310 PF01184 GPR1/FUN34/yaaH family CYK57_02311 PF00005 ABC transporter CYK57_02312 PF01497 Periplasmic binding protein CYK57_02313 PF01032 FecCD transport family CYK57_02314 PF07715 TonB-dependent Receptor Plug Domain CYK57_02314 PF00593 TonB dependent receptor CYK57_02316 PF01259 SAICAR synthetase CYK57_02317 PF01634 ATP phosphoribosyltransferase CYK57_02317 PF08029 HisG, C-terminal domain CYK57_02318 PF00815 Histidinol dehydrogenase CYK57_02319 PF00155 Aminotransferase class I and II CYK57_02321 PF00475 Imidazoleglycerol-phosphate dehydratase CYK57_02323 PF17761 DUF1016 N-terminal domain CYK57_02323 PF06250 YhcG PDDEXK nuclease domain CYK57_02324 PF00117 Glutamine amidotransferase class-I CYK57_02325 PF00977 Histidine biosynthesis protein CYK57_02326 PF00977 Histidine biosynthesis protein CYK57_02327 PF01502 Phosphoribosyl-AMP cyclohydrolase CYK57_02327 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CYK57_02328 PF02592 Putative vitamin uptake transporter CYK57_02329 PF00557 Metallopeptidase family M24 CYK57_02331 PF00356 Bacterial regulatory proteins, lacI family CYK57_02331 PF13407 Periplasmic binding protein domain CYK57_02332 PF08244 Glycosyl hydrolases family 32 C terminal CYK57_02332 PF00251 Glycosyl hydrolases family 32 N-terminal domain CYK57_02333 PF00294 pfkB family carbohydrate kinase CYK57_02334 PF07732 Multicopper oxidase CYK57_02335 PF02687 FtsX-like permease family CYK57_02335 PF12704 MacB-like periplasmic core domain CYK57_02336 PF00005 ABC transporter CYK57_02337 PF12704 MacB-like periplasmic core domain CYK57_02337 PF02687 FtsX-like permease family CYK57_02338 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CYK57_02338 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CYK57_02339 PF00793 DAHP synthetase I family CYK57_02340 PF13369 Transglutaminase-like superfamily CYK57_02341 PF13847 Methyltransferase domain CYK57_02341 PF17827 PrmC N-terminal domain CYK57_02343 PF03462 PCRF domain CYK57_02343 PF00472 RF-1 domain CYK57_02344 PF00581 Rhodanese-like domain CYK57_02345 PF04143 Sulphur transport