locus-tag class description D1098_00005 PF00308 Bacterial dnaA protein D1098_00005 PF08299 Bacterial dnaA protein helix-turn-helix D1098_00005 PF11638 DnaA N-terminal domain D1098_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D1098_00010 PF02767 DNA polymerase III beta subunit, central domain D1098_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D1098_00015 PF02463 RecF/RecN/SMC N terminal domain D1098_00020 PF00080 Copper/zinc superoxide dismutase (SODC) D1098_00025 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1098_00025 PF02774 Semialdehyde dehydrogenase, dimerisation domain D1098_00035 PF02684 Lipid-A-disaccharide synthetase D1098_00040 PF01343 Peptidase family S49 D1098_00040 PF08496 Peptidase family S49 N-terminal D1098_00045 PF02381 MraZ protein, putative antitoxin-like D1098_00050 PF01795 MraW methylase family D1098_00055 PF04999 Cell division protein FtsL D1098_00060 PF00905 Penicillin binding protein transpeptidase domain D1098_00060 PF03717 Penicillin-binding Protein dimerisation domain D1098_00065 PF01225 Mur ligase family, catalytic domain D1098_00065 PF02875 Mur ligase family, glutamate ligase domain D1098_00065 PF08245 Mur ligase middle domain D1098_00070 PF01225 Mur ligase family, catalytic domain D1098_00070 PF02875 Mur ligase family, glutamate ligase domain D1098_00070 PF08245 Mur ligase middle domain D1098_00075 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D1098_00075 PF00953 Glycosyl transferase family 4 D1098_00080 PF02875 Mur ligase family, glutamate ligase domain D1098_00080 PF08245 Mur ligase middle domain D1098_00085 PF01098 Cell cycle protein D1098_00090 PF04101 Glycosyltransferase family 28 C-terminal domain D1098_00090 PF03033 Glycosyltransferase family 28 N-terminal domain D1098_00095 PF02875 Mur ligase family, glutamate ligase domain D1098_00095 PF08245 Mur ligase middle domain D1098_00095 PF01225 Mur ligase family, catalytic domain D1098_00100 PF01820 D-ala D-ala ligase N-terminus D1098_00100 PF07478 D-ala D-ala ligase C-terminus D1098_00105 PF03799 Cell division protein FtsQ D1098_00105 PF08478 POTRA domain, FtsQ-type D1098_00110 PF02491 SHS2 domain inserted in FTSA D1098_00115 PF12327 FtsZ family, C-terminal domain D1098_00115 PF00091 Tubulin/FtsZ family, GTPase domain D1098_00120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D1098_00125 PF02463 RecF/RecN/SMC N terminal domain D1098_00130 PF00005 ABC transporter D1098_00130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1098_00135 PF00528 Binding-protein-dependent transport system inner membrane component D1098_00135 PF12911 N-terminal TM domain of oligopeptide transport permease C D1098_00140 PF00528 Binding-protein-dependent transport system inner membrane component D1098_00145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1098_00150 PF16658 Class II release factor RF3, C-terminal domain D1098_00150 PF00009 Elongation factor Tu GTP binding domain D1098_00150 PF03144 Elongation factor Tu domain 2 D1098_00165 PF01195 Peptidyl-tRNA hydrolase D1098_00170 PF01926 50S ribosome-binding GTPase D1098_00170 PF06071 Protein of unknown function (DUF933) D1098_00185 PF05433 Glycine zipper 2TM domain D1098_00195 PF00750 tRNA synthetases class I (R) D1098_00195 PF03485 Arginyl tRNA synthetase N terminal domain D1098_00195 PF05746 DALR anticodon binding domain D1098_00200 PF01018 GTP1/OBG D1098_00200 PF01926 50S ribosome-binding GTPase D1098_00205 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) D1098_00210 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1098_00210 PF00588 SpoU rRNA Methylase family D1098_00215 PF13091 PLD-like domain D1098_00220 PF08264 Anticodon-binding domain of tRNA D1098_00220 PF06827 Zinc finger found in FPG and IleRS D1098_00220 PF00133 tRNA synthetases class I (I, L, M and V) D1098_00225 PF01687 Riboflavin kinase D1098_00225 PF06574 FAD synthetase D1098_00230 PF13521 AAA domain D1098_00230 PF01467 Cytidylyltransferase-like D1098_00235 PF00149 Calcineurin-like phosphoesterase D1098_00240 PF00072 Response regulator receiver domain D1098_00240 PF00486 Transcriptional regulatory protein, C terminal D1098_00260 PF01168 Alanine racemase, N-terminal domain D1098_00265 PF00679 Elongation factor G C-terminus D1098_00265 PF00009 Elongation factor Tu GTP binding domain D1098_00265 PF03144 Elongation factor Tu domain 2 D1098_00270 PF00462 Glutaredoxin D1098_00275 PF01138 3' exoribonuclease family, domain 1 D1098_00275 PF03725 3' exoribonuclease family, domain 2 D1098_00280 PF08340 Domain of unknown function (DUF1732) D1098_00280 PF03755 YicC-like family, N-terminal region D1098_00285 PF01571 Aminomethyltransferase folate-binding domain D1098_00290 PF00037 4Fe-4S binding domain D1098_00295 PF00196 Bacterial regulatory proteins, luxR family D1098_00295 PF00072 Response regulator receiver domain D1098_00300 PF10672 S-adenosylmethionine-dependent methyltransferase D1098_00300 PF02926 THUMP domain D1098_00300 PF01170 Putative RNA methylase family UPF0020 D1098_00305 PF00588 SpoU rRNA Methylase family D1098_00310 PF00923 Transaldolase/Fructose-6-phosphate aldolase D1098_00340 PF00308 Bacterial dnaA protein D1098_00345 PF00005 ABC transporter D1098_00350 PF03379 CcmB protein D1098_00355 PF01578 Cytochrome C assembly protein D1098_00360 PF04995 Heme exporter protein D (CcmD) D1098_00365 PF03100 CcmE D1098_00370 PF01578 Cytochrome C assembly protein D1098_00370 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1098_00390 PF01464 Transglycosylase SLT domain D1098_00390 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1098_00400 PF04972 BON domain D1098_00405 PF13580 SIS domain D1098_00410 PF02021 Uncharacterised protein family UPF0102 D1098_00415 PF04348 LppC putative lipoprotein D1098_00420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D1098_00425 PF04315 Elongation factor P hydroxylase D1098_00430 PF11412 Disulphide bond corrector protein DsbC D1098_00430 PF02683 Cytochrome C biogenesis protein transmembrane region D1098_00430 PF13098 Thioredoxin-like domain D1098_00440 PF01381 Helix-turn-helix D1098_00445 PF01699 Sodium/calcium exchanger protein D1098_00450 PF01161 Phosphatidylethanolamine-binding protein D1098_00455 PF00005 ABC transporter D1098_00460 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1098_00465 PF00528 Binding-protein-dependent transport system inner membrane component D1098_00470 PF00528 Binding-protein-dependent transport system inner membrane component D1098_00475 PF09313 Domain of unknown function (DUF1971) D1098_00475 PF03848 Tellurite resistance protein TehB D1098_00480 PF01613 Flavin reductase like domain D1098_00485 PF04269 Protein of unknown function, DUF440 D1098_00495 PF00448 SRP54-type protein, GTPase domain D1098_00495 PF02881 SRP54-type protein, helical bundle domain D1098_00500 PF00005 ABC transporter D1098_00505 PF18075 FtsX extracellular domain D1098_00510 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1098_00510 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region D1098_00515 PF02152 Dihydroneopterin aldolase D1098_00520 PF02660 Glycerol-3-phosphate acyltransferase D1098_00525 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D1098_00525 PF01433 Peptidase family M1 domain D1098_00525 PF11940 Domain of unknown function (DUF3458) Ig-like fold D1098_00530 PF03461 TRCF domain D1098_00530 PF00271 Helicase conserved C-terminal domain D1098_00530 PF00270 DEAD/DEAH box helicase D1098_00530 PF17757 UvrB interaction domain D1098_00530 PF02559 CarD-like/TRCF domain D1098_00565 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D1098_00570 PF01455 HupF/HypC family D1098_00575 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE D1098_00580 PF01750 Hydrogenase maturation protease D1098_00585 PF00374 Nickel-dependent hydrogenase D1098_00590 PF03916 Polysulphide reductase, NrfD D1098_00595 PF13247 4Fe-4S dicluster domain D1098_00600 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D1098_00600 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D1098_00605 PF00708 Acylphosphatase D1098_00605 PF17788 HypF Kae1-like domain D1098_00605 PF01300 Telomere recombination D1098_00605 PF07503 HypF finger D1098_00610 PF00586 AIR synthase related protein, N-terminal domain D1098_00610 PF02769 AIR synthase related protein, C-terminal domain D1098_00615 PF01924 Hydrogenase formation hypA family D1098_00620 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1098_00625 PF00580 UvrD/REP helicase N-terminal domain D1098_00625 PF13361 UvrD-like helicase C-terminal domain D1098_00630 PF04055 Radical SAM superfamily D1098_00630 PF01938 TRAM domain D1098_00630 PF00919 Uncharacterized protein family UPF0004 D1098_00635 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D1098_00640 PF05524 PEP-utilising enzyme, N-terminal D1098_00640 PF00391 PEP-utilising enzyme, mobile domain D1098_00640 PF02896 PEP-utilising enzyme, TIM barrel domain D1098_00645 PF00381 PTS HPr component phosphorylation site D1098_00650 PF00528 Binding-protein-dependent transport system inner membrane component D1098_00655 PF00005 ABC transporter D1098_00660 PF00367 phosphotransferase system, EIIB D1098_00660 PF02378 Phosphotransferase system, EIIC D1098_00665 PF00696 Amino acid kinase family D1098_00670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D1098_00670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D1098_00675 PF03605 Anaerobic c4-dicarboxylate membrane transporter D1098_00680 PF01430 Hsp33 protein D1098_00685 PF01479 S4 domain D1098_00690 PF00293 NUDIX domain D1098_00695 PF00459 Inositol monophosphatase family D1098_00700 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D1098_00700 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D1098_00705 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1098_00710 PF07690 Major Facilitator Superfamily D1098_00720 PF17761 DUF1016 N-terminal domain D1098_00720 PF06250 YhcG PDDEXK nuclease domain D1098_00730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D1098_00730 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D1098_00745 PF04354 ZipA, C-terminal FtsZ-binding domain D1098_00750 PF00533 BRCA1 C Terminus (BRCT) domain D1098_00750 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D1098_00750 PF03120 NAD-dependent DNA ligase OB-fold domain D1098_00750 PF01653 NAD-dependent DNA ligase adenylation domain D1098_00750 PF12826 Helix-hairpin-helix motif D1098_00755 PF01370 NAD dependent epimerase/dehydratase family D1098_00760 PF07690 Major Facilitator Superfamily D1098_00770 PF05191 Adenylate kinase, active site lid D1098_00780 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D1098_00780 PF00056 lactate/malate dehydrogenase, NAD binding domain D1098_00785 PF01316 Arginine repressor, DNA binding domain D1098_00785 PF02863 Arginine repressor, C-terminal domain D1098_00790 PF08338 Domain of unknown function (DUF1731) D1098_00790 PF01370 NAD dependent epimerase/dehydratase family D1098_00795 PF00595 PDZ domain D1098_00800 PF00005 ABC transporter D1098_00805 PF02405 Permease MlaE D1098_00810 PF02470 MlaD protein D1098_00815 PF05494 MlaC protein D1098_00825 PF01722 BolA-like protein D1098_00830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1098_00845 PF02627 Carboxymuconolactone decarboxylase family D1098_00850 PF12848 ABC transporter D1098_00850 PF00005 ABC transporter D1098_00855 PF00929 Exonuclease D1098_00870 PF02657 Fe-S metabolism associated domain D1098_00875 PF00574 Clp protease D1098_00880 PF06689 ClpX C4-type zinc finger D1098_00880 PF10431 C-terminal, D2-small domain, of ClpB protein D1098_00880 PF07724 AAA domain (Cdc48 subfamily) D1098_00885 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D1098_00890 PF03966 Trm112p-like protein D1098_00895 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D1098_00900 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D1098_00910 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1098_00935 PF04055 Radical SAM superfamily D1098_00945 PF00575 S1 RNA binding domain D1098_00945 PF09371 Tex-like protein N-terminal domain D1098_00945 PF17674 HHH domain D1098_00945 PF16921 Tex protein YqgF-like domain D1098_00950 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1098_00955 PF10263 SprT-like family D1098_00955 PF17283 SprT-like zinc ribbon domain D1098_00960 PF00445 Ribonuclease T2 family D1098_00965 PF01343 Peptidase family S49 D1098_00970 PF00881 Nitroreductase family D1098_00975 PF00106 short chain dehydrogenase D1098_00980 PF00403 Heavy-metal-associated domain D1098_00985 PF00403 Heavy-metal-associated domain D1098_00995 PF09278 MerR, DNA binding D1098_00995 PF00376 MerR family regulatory protein D1098_01000 PF12849 PBP superfamily domain D1098_01005 PF00528 Binding-protein-dependent transport system inner membrane component D1098_01010 PF00528 Binding-protein-dependent transport system inner membrane component D1098_01015 PF00005 ABC transporter D1098_01020 PF00072 Response regulator receiver domain D1098_01020 PF00486 Transcriptional regulatory protein, C terminal D1098_01025 PF00512 His Kinase A (phospho-acceptor) domain D1098_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1098_01030 PF01751 Toprim domain D1098_01030 PF00986 DNA gyrase B subunit, carboxyl terminus D1098_01030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1098_01030 PF00204 DNA gyrase B D1098_01035 PF00939 Sodium:sulfate symporter transmembrane region D1098_01040 PF00939 Sodium:sulfate symporter transmembrane region D1098_01045 PF00939 Sodium:sulfate symporter transmembrane region D1098_01050 PF00162 Phosphoglycerate kinase D1098_01055 PF01116 Fructose-bisphosphate aldolase class-II D1098_01060 PF00005 ABC transporter D1098_01075 PF00881 Nitroreductase family D1098_01080 PF03350 Uncharacterized protein family, UPF0114 D1098_01090 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1098_01090 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1098_01095 PF01026 TatD related DNase D1098_01100 PF02554 Carbon starvation protein CstA D1098_01105 PF02446 4-alpha-glucanotransferase D1098_01110 PF00528 Binding-protein-dependent transport system inner membrane component D1098_01115 PF00528 Binding-protein-dependent transport system inner membrane component D1098_01115 PF14785 Maltose transport system permease protein MalF P2 domain D1098_01120 PF01547 Bacterial extracellular solute-binding protein D1098_01130 PF02264 LamB porin D1098_01135 PF07148 Maltose operon periplasmic protein precursor (MalM) D1098_01140 PF17874 MalT-like TPR region D1098_01140 PF00196 Bacterial regulatory proteins, luxR family D1098_01145 PF00343 Carbohydrate phosphorylase D1098_01155 PF04461 Protein of unknown function (DUF520) D1098_01160 PF18429 Domain of unknown function (DUF5609) D1098_01165 PF10144 Bacterial virulence factor haemolysin D1098_01170 PF01176 Translation initiation factor 1A / IF-1 D1098_01185 PF02635 DsrE/DsrF-like family D1098_01190 PF00860 Permease family D1098_01200 PF04073 Aminoacyl-tRNA editing domain D1098_01205 PF01402 Ribbon-helix-helix protein, copG family D1098_01210 PF00258 Flavodoxin D1098_01215 PF01475 Ferric uptake regulator family D1098_01220 PF02470 MlaD protein D1098_01225 PF02664 S-Ribosylhomocysteinase (LuxS) D1098_01230 PF00664 ABC transporter transmembrane region D1098_01230 PF00005 ABC transporter D1098_01245 PF13419 Haloacid dehalogenase-like hydrolase D1098_01250 PF03595 Voltage-dependent anion channel D1098_01265 PF02028 BCCT, betaine/carnitine/choline family transporter D1098_01270 PF00107 Zinc-binding dehydrogenase D1098_01270 PF08240 Alcohol dehydrogenase GroES-like domain D1098_01290 PF00756 Putative esterase D1098_01300 PF00145 C-5 cytosine-specific DNA methylase D1098_01310 PF03852 DNA mismatch endonuclease Vsr D1098_01315 PF01914 MarC family integral membrane protein D1098_01320 PF00881 Nitroreductase family D1098_01325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D1098_01325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D1098_01330 PF18766 SWI2/SNF2 ATPase D1098_01330 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D1098_01330 PF11867 Domain of unknown function (DUF3387) D1098_01350 PF00296 Luciferase-like monooxygenase D1098_01355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D1098_01360 PF03466 LysR substrate binding domain D1098_01360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_01380 PF03466 LysR substrate binding domain D1098_01380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_01400 PF13635 Domain of unknown function (DUF4143) D1098_01400 PF13173 AAA domain D1098_01405 PF02254 TrkA-N domain D1098_01405 PF00999 Sodium/hydrogen exchanger family D1098_01410 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D1098_01410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D1098_01415 PF00206 Lyase D1098_01415 PF14698 Argininosuccinate lyase C-terminal D1098_01420 PF01740 STAS domain D1098_01420 PF00916 Sulfate permease family D1098_01425 PF13464 Domain of unknown function (DUF4115) D1098_01430 PF04551 GcpE protein D1098_01435 PF03129 Anticodon binding domain D1098_01435 PF13393 Histidyl-tRNA synthetase D1098_01440 PF09976 Tetratricopeptide repeat-like domain D1098_01445 PF04973 Nicotinamide mononucleotide transporter D1098_01450 PF02844 Phosphoribosylglycinamide synthetase, N domain D1098_01450 PF02843 Phosphoribosylglycinamide synthetase, C domain D1098_01450 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D1098_01455 PF01250 Ribosomal protein S6 D1098_01460 PF00436 Single-strand binding protein family D1098_01465 PF01084 Ribosomal protein S18 D1098_01470 PF01281 Ribosomal protein L9, N-terminal domain D1098_01470 PF03948 Ribosomal protein L9, C-terminal domain D1098_01475 PF04325 Protein of unknown function (DUF465) D1098_01480 PF16036 Chalcone isomerase-like D1098_01485 PF08241 Methyltransferase domain D1098_01490 PF02885 Glycosyl transferase family, helical bundle domain D1098_01490 PF00591 Glycosyl transferase family, a/b domain D1098_01495 PF00117 Glutamine amidotransferase class-I D1098_01500 PF04715 Anthranilate synthase component I, N terminal region D1098_01500 PF00425 chorismate binding enzyme D1098_01505 PF04261 Dyp-type peroxidase family D1098_01515 PF01300 Telomere recombination D1098_01520 PF00849 RNA pseudouridylate synthase D1098_01520 PF01479 S4 domain D1098_01530 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1098_01535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_01535 PF03466 LysR substrate binding domain D1098_01545 PF01717 Cobalamin-independent synthase, Catalytic domain D1098_01545 PF08267 Cobalamin-independent synthase, N-terminal domain D1098_01550 PF00675 Insulinase (Peptidase family M16) D1098_01550 PF05193 Peptidase M16 inactive domain D1098_01555 PF02075 Crossover junction endodeoxyribonuclease RuvC D1098_01565 PF01709 Transcriptional regulator D1098_01570 PF00293 NUDIX domain D1098_01575 PF02938 GAD domain D1098_01575 PF00152 tRNA synthetases class II (D, K and N) D1098_01575 PF01336 OB-fold nucleic acid binding domain D1098_01580 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D1098_01580 PF03625 Domain of unknown function DUF302 D1098_01585 PF00117 Glutamine amidotransferase class-I D1098_01590 PF02646 RmuC family D1098_01590 PF02646 RmuC family D1098_01595 PF00425 chorismate binding enzyme D1098_01600 PF01063 Amino-transferase class IV D1098_01605 PF00154 recA bacterial DNA recombination protein D1098_01610 PF02631 RecX family D1098_01615 PF04266 ASCH domain D1098_01620 PF01396 Topoisomerase DNA binding C4 zinc finger D1098_01625 PF01300 Telomere recombination D1098_01630 PF08501 Shikimate dehydrogenase substrate binding domain D1098_01630 PF01488 Shikimate / quinate 5-dehydrogenase D1098_01630 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D1098_01655 PF04380 Membrane fusogenic activity D1098_01660 PF00342 Phosphoglucose isomerase D1098_01665 PF01476 LysM domain D1098_01665 PF01520 N-acetylmuramoyl-L-alanine amidase D1098_01670 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D1098_01675 PF00929 Exonuclease D1098_01680 PF01467 Cytidylyltransferase-like D1098_01685 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D1098_01685 PF00534 Glycosyl transferases group 1 D1098_01690 PF04932 O-Antigen ligase D1098_01695 PF16325 Peptidase family U32 C-terminal domain D1098_01695 PF01136 Peptidase family U32 D1098_01705 PF01594 AI-2E family transporter D1098_01710 PF01235 Sodium:alanine symporter family D1098_01715 PF00565 Staphylococcal nuclease homologue D1098_01720 PF00266 Aminotransferase class-V D1098_01725 PF00365 Phosphofructokinase D1098_01730 PF14256 YwiC-like protein D1098_01735 PF01479 S4 domain D1098_01735 PF00849 RNA pseudouridylate synthase D1098_01740 PF13525 Outer membrane lipoprotein D1098_01745 PF00814 Glycoprotease family D1098_01750 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1098_01755 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1098_01760 PF01491 Frataxin-like domain D1098_01765 PF00271 Helicase conserved C-terminal domain D1098_01765 PF00270 DEAD/DEAH box helicase D1098_01765 PF16124 RecQ zinc-binding D1098_01765 PF00570 HRDC domain D1098_01765 PF09382 RQC domain D1098_01770 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) D1098_01775 PF00293 NUDIX domain D1098_01780 PF03952 Enolase, N-terminal domain D1098_01780 PF00113 Enolase, C-terminal TIM barrel domain D1098_01785 PF05958 tRNA (Uracil-5-)-methyltransferase D1098_01790 PF00933 Glycosyl hydrolase family 3 N terminal domain D1098_01795 PF03741 Integral membrane protein TerC family D1098_01800 PF02976 DNA mismatch repair enzyme MutH D1098_01805 PF00717 Peptidase S24-like D1098_01805 PF01726 LexA DNA binding domain D1098_01810 PF01553 Acyltransferase D1098_01815 PF01370 NAD dependent epimerase/dehydratase family D1098_01815 PF02222 ATP-grasp domain D1098_01820 PF07733 Bacterial DNA polymerase III alpha NTPase domain D1098_01820 PF14579 Helix-hairpin-helix motif D1098_01820 PF02811 PHP domain D1098_01820 PF01336 OB-fold nucleic acid binding domain D1098_01820 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D1098_01825 PF03739 Lipopolysaccharide export system permease LptF/LptG D1098_01830 PF03739 Lipopolysaccharide export system permease LptF/LptG D1098_01840 PF00883 Cytosol aminopeptidase family, catalytic domain D1098_01840 PF02789 Cytosol aminopeptidase family, N-terminal domain D1098_01855 PF04055 Radical SAM superfamily D1098_01860 PF01242 6-pyruvoyl tetrahydropterin synthase D1098_01865 PF06508 Queuosine biosynthesis protein QueC D1098_01870 PF07501 G5 domain D1098_01870 PF00728 Glycosyl hydrolase family 20, catalytic domain D1098_01870 PF00746 LPXTG cell wall anchor motif D1098_01870 PF04650 YSIRK type signal peptide D1098_01875 PF00586 AIR synthase related protein, N-terminal domain D1098_01875 PF02769 AIR synthase related protein, C-terminal domain D1098_01880 PF00155 Aminotransferase class I and II D1098_01880 PF00392 Bacterial regulatory proteins, gntR family D1098_01895 PF10415 Fumarase C C-terminus D1098_01895 PF00206 Lyase D1098_01905 PF03960 ArsC family D1098_01910 PF01758 Sodium Bile acid symporter family D1098_01915 PF17871 AAA lid domain D1098_01915 PF02861 Clp amino terminal domain, pathogenicity island component D1098_01915 PF10431 C-terminal, D2-small domain, of ClpB protein D1098_01915 PF07724 AAA domain (Cdc48 subfamily) D1098_01915 PF00004 ATPase family associated with various cellular activities (AAA) D1098_01920 PF03922 OmpW family D1098_01925 PF07687 Peptidase dimerisation domain D1098_01925 PF01546 Peptidase family M20/M25/M40 D1098_01935 PF13520 Amino acid permease D1098_01940 PF13520 Amino acid permease D1098_01950 PF02772 S-adenosylmethionine synthetase, central domain D1098_01950 PF02773 S-adenosylmethionine synthetase, C-terminal domain D1098_01950 PF00438 S-adenosylmethionine synthetase, N-terminal domain D1098_01955 PF00860 Permease family D1098_01960 PF00085 Thioredoxin D1098_01965 PF01145 SPFH domain / Band 7 family D1098_01970 PF01145 SPFH domain / Band 7 family D1098_01975 PF00709 Adenylosuccinate synthetase D1098_01980 PF02926 THUMP domain D1098_01980 PF02568 Thiamine biosynthesis protein (ThiI) D1098_01990 PF02545 Maf-like protein D1098_01995 PF00860 Permease family D1098_02000 PF00210 Ferritin-like domain D1098_02005 PF00210 Ferritin-like domain D1098_02010 PF07549 SecD/SecF GG Motif D1098_02010 PF02355 Protein export membrane protein D1098_02015 PF02355 Protein export membrane protein D1098_02015 PF13721 SecD export protein N-terminal TM region D1098_02015 PF07549 SecD/SecF GG Motif D1098_02020 PF02699 Preprotein translocase subunit D1098_02025 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D1098_02030 PF00512 His Kinase A (phospho-acceptor) domain D1098_02030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1098_02030 PF08521 Two-component sensor kinase N-terminal D1098_02035 PF00486 Transcriptional regulatory protein, C terminal D1098_02035 PF00072 Response regulator receiver domain D1098_02050 PF04076 Bacterial OB fold (BOF) protein D1098_02060 PF02801 Beta-ketoacyl synthase, C-terminal domain D1098_02060 PF00109 Beta-ketoacyl synthase, N-terminal domain D1098_02065 PF01295 Adenylate cyclase, class-I D1098_02065 PF12633 Adenylate cyclase NT domain D1098_02070 PF00999 Sodium/hydrogen exchanger family D1098_02070 PF02254 TrkA-N domain D1098_02075 PF01578 Cytochrome C assembly protein D1098_02075 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1098_02080 PF08534 Redoxin D1098_02085 PF03918 Cytochrome C biogenesis protein D1098_02095 PF01243 Pyridoxamine 5'-phosphate oxidase D1098_02105 PF01810 LysE type translocator D1098_02110 PF00892 EamA-like transporter family D1098_02115 PF00892 EamA-like transporter family D1098_02120 PF00155 Aminotransferase class I and II D1098_02125 PF00425 chorismate binding enzyme D1098_02130 PF03956 Lysine exporter LysO D1098_02135 PF00817 impB/mucB/samB family D1098_02135 PF11798 IMS family HHH motif D1098_02135 PF11799 impB/mucB/samB family C-terminal domain D1098_02140 PF01435 Peptidase family M48 D1098_02150 PF01226 Formate/nitrite transporter D1098_02155 PF02901 Pyruvate formate lyase-like D1098_02155 PF01228 Glycine radical D1098_02160 PF04055 Radical SAM superfamily D1098_02165 PF01432 Peptidase family M3 D1098_02170 PF00800 Prephenate dehydratase D1098_02170 PF01817 Chorismate mutase type II D1098_02175 PF18074 Primosomal protein N C-terminal domain D1098_02175 PF17764 3′ DNA-binding domain (3′BD) D1098_02175 PF00271 Helicase conserved C-terminal domain D1098_02175 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D1098_02175 PF00270 DEAD/DEAH box helicase D1098_02180 PF02698 DUF218 domain D1098_02185 PF04230 Polysaccharide pyruvyl transferase D1098_02195 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1098_02205 PF00535 Glycosyl transferase family 2 D1098_02210 PF00535 Glycosyl transferase family 2 D1098_02215 PF01625 Peptide methionine sulfoxide reductase D1098_02215 PF01641 SelR domain D1098_02225 PF07729 FCD domain D1098_02225 PF00392 Bacterial regulatory proteins, gntR family D1098_02230 PF17137 Domain of unknown function (DUF5110) D1098_02230 PF13802 Galactose mutarotase-like D1098_02230 PF01055 Glycosyl hydrolases family 31 D1098_02230 PF16338 Domain of unknown function (DUF4968) D1098_02235 PF02614 Glucuronate isomerase D1098_02240 PF00294 pfkB family carbohydrate kinase D1098_02245 PF01081 KDPG and KHG aldolase D1098_02255 PF07670 Nucleoside recognition D1098_02255 PF01773 Na+ dependent nucleoside transporter N-terminus D1098_02255 PF07662 Na+ dependent nucleoside transporter C-terminus D1098_02260 PF01791 DeoC/LacD family aldolase D1098_02265 PF01048 Phosphorylase superfamily D1098_02270 PF00166 Chaperonin 10 Kd subunit D1098_02275 PF00118 TCP-1/cpn60 chaperonin family D1098_02280 PF00465 Iron-containing alcohol dehydrogenase D1098_02280 PF00171 Aldehyde dehydrogenase family D1098_02285 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D1098_02285 PF03900 Porphobilinogen deaminase, C-terminal domain D1098_02290 PF02602 Uroporphyrinogen-III synthase HemD D1098_02295 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D1098_02300 PF07219 HemY protein N-terminus D1098_02305 PF05661 Protein of unknown function (DUF808) D1098_02310 PF00312 Ribosomal protein S15 D1098_02315 PF00999 Sodium/hydrogen exchanger family D1098_02320 PF13145 PPIC-type PPIASE domain D1098_02325 PF01914 MarC family integral membrane protein D1098_02335 PF10609 NUBPL iron-transfer P-loop NTPase D1098_02345 PF06594 Haemolysin-type calcium binding protein related domain D1098_02345 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1098_02350 PF02929 Beta galactosidase small chain D1098_02350 PF16353 Domain of unknown function(DUF4981) D1098_02350 PF00703 Glycosyl hydrolases family 2 D1098_02350 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D1098_02350 PF02837 Glycosyl hydrolases family 2, sugar binding domain D1098_02355 PF01263 Aldose 1-epimerase D1098_02360 PF08544 GHMP kinases C terminal D1098_02360 PF00288 GHMP kinases N terminal domain D1098_02360 PF10509 Galactokinase galactose-binding signature D1098_02365 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D1098_02365 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D1098_02370 PF00268 Ribonucleotide reductase, small chain D1098_02375 PF00317 Ribonucleotide reductase, all-alpha domain D1098_02375 PF02867 Ribonucleotide reductase, barrel domain D1098_02375 PF03477 ATP cone domain D1098_02380 PF00149 Calcineurin-like phosphoesterase D1098_02390 PF06628 Catalase-related immune-responsive D1098_02390 PF00199 Catalase D1098_02395 PF00183 Hsp90 protein D1098_02395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1098_02405 PF02779 Transketolase, pyrimidine binding domain D1098_02405 PF00456 Transketolase, thiamine diphosphate binding domain D1098_02405 PF02780 Transketolase, C-terminal domain D1098_02410 PF01197 Ribosomal protein L31 D1098_02430 PF03466 LysR substrate binding domain D1098_02430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_02435 PF03372 Endonuclease/Exonuclease/phosphatase family D1098_02440 PF13726 Na+-H+ antiporter family D1098_02440 PF03553 Na+/H+ antiporter family D1098_02445 PF01171 PP-loop family D1098_02450 PF04217 Protein of unknown function, DUF412 D1098_02460 PF04279 Intracellular septation protein A D1098_02465 PF03061 Thioesterase superfamily D1098_02470 PF03795 YCII-related domain D1098_02475 PF03710 Glutamate-ammonia ligase adenylyltransferase D1098_02475 PF08335 GlnD PII-uridylyltransferase D1098_02480 PF06062 Uncharacterised protein family (UPF0231) D1098_02485 PF03616 Sodium/glutamate symporter D1098_02490 PF06826 Predicted Permease Membrane Region D1098_02490 PF02080 TrkA-C domain D1098_02495 PF04220 Der GTPase activator (YihI) D1098_02505 PF04055 Radical SAM superfamily D1098_02505 PF06969 HemN C-terminal domain D1098_02510 PF03968 OstA-like protein D1098_02510 PF04453 LPS transport system D D1098_02515 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB D1098_02515 PF17287 POTRA domain D1098_02515 PF08479 POTRA domain, ShlB-type D1098_02520 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB D1098_02520 PF08479 POTRA domain, ShlB-type D1098_02520 PF17287 POTRA domain D1098_02525 PF05860 haemagglutination activity domain D1098_02525 PF04829 Pre-toxin domain with VENN motif D1098_02525 PF13018 Extended Signal Peptide of Type V secretion system D1098_02525 PF13332 Hemagglutinin repeat D1098_02545 PF02142 MGS-like domain D1098_02545 PF01808 AICARFT/IMPCHase bienzyme D1098_02550 PF17176 tRNA-binding domain D1098_02550 PF05127 Helicase D1098_02550 PF13718 GNAT acetyltransferase 2 D1098_02555 PF02794 RTX toxin acyltransferase family D1098_02560 PF08339 RTX C-terminal domain D1098_02560 PF02382 N-terminal domain in RTX protein D1098_02560 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1098_02565 PF03412 Peptidase C39 family D1098_02565 PF00664 ABC transporter transmembrane region D1098_02565 PF00005 ABC transporter D1098_02585 PF01381 Helix-turn-helix D1098_02590 PF06114 IrrE N-terminal-like domain D1098_02620 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D1098_02625 PF01272 Transcription elongation factor, GreA/GreB, C-term D1098_02625 PF03449 Transcription elongation factor, N-terminal D1098_02630 PF05175 Methyltransferase small domain D1098_02635 PF00202 Aminotransferase class-III D1098_02640 PF00155 Aminotransferase class I and II D1098_02645 PF04301 Protein of unknown function (DUF452) D1098_02650 PF08241 Methyltransferase domain D1098_02660 PF01713 Smr domain D1098_02670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1098_02670 PF00512 His Kinase A (phospho-acceptor) domain D1098_02670 PF18415 Histidine kinase receptor ArcB trans-membrane domain D1098_02670 PF01627 Hpt domain D1098_02670 PF00072 Response regulator receiver domain D1098_02670 PF00989 PAS fold D1098_02675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D1098_02675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D1098_02680 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D1098_02685 PF02082 Transcriptional regulator D1098_02690 PF00266 Aminotransferase class-V D1098_02695 PF01592 NifU-like N terminal domain D1098_02700 PF01521 Iron-sulphur cluster biosynthesis D1098_02705 PF07743 HSCB C-terminal oligomerisation domain D1098_02715 PF10946 Protein of unknown function DUF2625 D1098_02720 PF00012 Hsp70 protein D1098_02725 PF00111 2Fe-2S iron-sulfur cluster binding domain D1098_02730 PF04384 Iron-sulphur cluster assembly D1098_02760 PF07715 TonB-dependent Receptor Plug Domain D1098_02760 PF00593 TonB dependent receptor D1098_02770 PF01743 Poly A polymerase head domain D1098_02770 PF12627 Probable RNA and SrmB- binding site of polymerase A D1098_02770 PF01966 HD domain D1098_02775 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1098_02780 PF01406 tRNA synthetases class I (C) catalytic domain D1098_02780 PF09190 DALR domain D1098_02785 PF09383 NIL domain D1098_02785 PF00005 ABC transporter D1098_02790 PF00528 Binding-protein-dependent transport system inner membrane component D1098_02795 PF03180 NLPA lipoprotein D1098_02800 PF03180 NLPA lipoprotein D1098_02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_02805 PF03466 LysR substrate binding domain D1098_02810 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D1098_02815 PF12464 Maltose acetyltransferase D1098_02815 PF14602 Hexapeptide repeat of succinyl-transferase D1098_02830 PF01227 GTP cyclohydrolase I D1098_02835 PF01416 tRNA pseudouridine synthase D1098_02840 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D1098_02845 PF03279 Bacterial lipid A biosynthesis acyltransferase D1098_02850 PF00701 Dihydrodipicolinate synthetase family D1098_02860 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D1098_02860 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D1098_02875 PF04216 Protein involved in formate dehydrogenase formation D1098_02880 PF01292 Prokaryotic cytochrome b561 D1098_02885 PF13247 4Fe-4S dicluster domain D1098_02885 PF09163 Formate dehydrogenase N, transmembrane D1098_02895 PF02634 FdhD/NarQ family D1098_02910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D1098_02910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D1098_02910 PF00378 Enoyl-CoA hydratase/isomerase D1098_02915 PF02803 Thiolase, C-terminal domain D1098_02915 PF00108 Thiolase, N-terminal domain D1098_02920 PF00730 HhH-GPD superfamily base excision DNA repair protein D1098_02920 PF00633 Helix-hairpin-helix motif D1098_02920 PF10576 Iron-sulfur binding domain of endonuclease III D1098_02925 PF01925 Sulfite exporter TauE/SafE D1098_02930 PF01472 PUA domain D1098_02930 PF00696 Amino acid kinase family D1098_02935 PF00186 Dihydrofolate reductase D1098_02945 PF18073 Rubredoxin metal binding domain D1098_02950 PF07963 Prokaryotic N-terminal methylation motif D1098_02955 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D1098_02955 PF00437 Type II/IV secretion system protein D1098_02960 PF00482 Type II secretion system (T2SS), protein F D1098_02970 PF01121 Dephospho-CoA kinase D1098_02975 PF03884 DNA gyrase inhibitor YacG D1098_02980 PF14840 Processivity clamp loader gamma complex DNA pol III C-term D1098_02980 PF06144 DNA polymerase III, delta subunit D1098_02985 PF04390 Lipopolysaccharide-assembly D1098_02990 PF13603 Leucyl-tRNA synthetase, Domain 2 D1098_02990 PF00133 tRNA synthetases class I (I, L, M and V) D1098_02990 PF08264 Anticodon-binding domain of tRNA D1098_02995 PF03575 Peptidase family S51 D1098_03000 PF03606 C4-dicarboxylate anaerobic carrier D1098_03005 PF07687 Peptidase dimerisation domain D1098_03005 PF01546 Peptidase family M20/M25/M40 D1098_03010 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1098_03010 PF02403 Seryl-tRNA synthetase N-terminal domain D1098_03015 PF01668 SmpB protein D1098_03020 PF04317 YcjX-like family, DUF463 D1098_03025 PF01928 CYTH domain D1098_03035 PF03701 Uncharacterised protein family (UPF0181) D1098_03040 PF00849 RNA pseudouridylate synthase D1098_03045 PF04287 tRNA pseudouridine synthase C D1098_03050 PF02661 Fic/DOC family D1098_03050 PF12728 Helix-turn-helix domain D1098_03055 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D1098_03055 PF00218 Indole-3-glycerol phosphate synthase D1098_03060 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D1098_03060 PF01266 FAD dependent oxidoreductase D1098_03065 PF03315 Serine dehydratase beta chain D1098_03065 PF03313 Serine dehydratase alpha chain D1098_03070 PF03222 Tryptophan/tyrosine permease family D1098_03075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1098_03080 PF02219 Methylenetetrahydrofolate reductase D1098_03085 PF01717 Cobalamin-independent synthase, Catalytic domain D1098_03090 PF00890 FAD binding domain D1098_03095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1098_03095 PF00005 ABC transporter D1098_03100 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1098_03100 PF00005 ABC transporter D1098_03105 PF00528 Binding-protein-dependent transport system inner membrane component D1098_03110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1098_03115 PF04055 Radical SAM superfamily D1098_03115 PF06969 HemN C-terminal domain D1098_03120 PF00578 AhpC/TSA family D1098_03130 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D1098_03130 PF14489 QueF-like protein D1098_03135 PF00588 SpoU rRNA Methylase family D1098_03140 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D1098_03140 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D1098_03140 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D1098_03145 PF02233 NAD(P) transhydrogenase beta subunit D1098_03150 PF02321 Outer membrane efflux protein D1098_03160 PF00005 ABC transporter D1098_03165 PF13533 Biotin-lipoyl like D1098_03170 PF00440 Bacterial regulatory proteins, tetR family D1098_03170 PF14278 Transcriptional regulator C-terminal region D1098_03175 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) D1098_03180 PF00485 Phosphoribulokinase / Uridine kinase family D1098_03185 PF01810 LysE type translocator D1098_03190 PF00300 Histidine phosphatase superfamily (branch 1) D1098_03195 PF01551 Peptidase family M23 D1098_03200 PF04748 Divergent polysaccharide deacetylase D1098_03205 PF17243 POTRA domain TamA domain 1 D1098_03205 PF01103 Surface antigen D1098_03210 PF04357 TamB, inner membrane protein subunit of TAM complex D1098_03215 PF00005 ABC transporter D1098_03215 PF00664 ABC transporter transmembrane region D1098_03220 PF00664 ABC transporter transmembrane region D1098_03220 PF00005 ABC transporter D1098_03225 PF04356 Protein of unknown function (DUF489) D1098_03230 PF00206 Lyase D1098_03230 PF08328 Adenylosuccinate lyase C-terminal D1098_03235 PF08220 DeoR-like helix-turn-helix domain D1098_03235 PF00455 DeoR C terminal sensor domain D1098_03240 PF01040 UbiA prenyltransferase family D1098_03245 PF00986 DNA gyrase B subunit, carboxyl terminus D1098_03245 PF18053 DNA gyrase B subunit insert domain D1098_03245 PF00204 DNA gyrase B D1098_03245 PF01751 Toprim domain D1098_03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1098_03250 PF09335 SNARE associated Golgi protein D1098_03255 PF00356 Bacterial regulatory proteins, lacI family D1098_03255 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D1098_03260 PF00576 HIUase/Transthyretin family D1098_03270 PF02601 Exonuclease VII, large subunit D1098_03270 PF13742 OB-fold nucleic acid binding domain D1098_03280 PF06725 3D domain D1098_03280 PF03562 MltA specific insert domain D1098_03290 PF08003 Protein of unknown function (DUF1698) D1098_03295 PF18273 Type III R-M EcoP15I C-terminal domain D1098_03295 PF01555 DNA methylase D1098_03300 PF04851 Type III restriction enzyme, res subunit D1098_03300 PF08774 VRR-NUC domain D1098_03305 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding D1098_03305 PF18381 YcaO cyclodehydratase C-terminal domain D1098_03310 PF10150 Ribonuclease E/G family D1098_03310 PF00575 S1 RNA binding domain D1098_03315 PF01336 OB-fold nucleic acid binding domain D1098_03315 PF00152 tRNA synthetases class II (D, K and N) D1098_03325 PF00348 Polyprenyl synthetase D1098_03330 PF02609 Exonuclease VII small subunit D1098_03335 PF03476 MOSC N-terminal beta barrel domain D1098_03335 PF03473 MOSC domain D1098_03335 PF00111 2Fe-2S iron-sulfur cluster binding domain D1098_03340 PF00884 Sulfatase D1098_03350 PF02542 YgbB family D1098_03355 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D1098_03360 PF04977 Septum formation initiator D1098_03365 PF01293 Phosphoenolpyruvate carboxykinase D1098_03375 PF13580 SIS domain D1098_03380 PF00158 Sigma-54 interaction domain D1098_03380 PF18024 Helix-turn-helix domain D1098_03385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1098_03390 PF00528 Binding-protein-dependent transport system inner membrane component D1098_03395 PF00528 Binding-protein-dependent transport system inner membrane component D1098_03395 PF12911 N-terminal TM domain of oligopeptide transport permease C D1098_03400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1098_03400 PF00005 ABC transporter D1098_03405 PF04237 YjbR D1098_03420 PF03060 Nitronate monooxygenase D1098_03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_03425 PF03466 LysR substrate binding domain D1098_03455 PF00436 Single-strand binding protein family D1098_03460 PF17755 UvrA DNA-binding domain D1098_03460 PF17760 UvrA interaction domain D1098_03470 PF06733 DEAD_2 D1098_03470 PF13307 Helicase C-terminal domain D1098_03480 PF04172 LrgB-like family D1098_03485 PF00664 ABC transporter transmembrane region D1098_03485 PF00005 ABC transporter D1098_03490 PF03550 Outer membrane lipoprotein LolB D1098_03495 PF00288 GHMP kinases N terminal domain D1098_03495 PF08544 GHMP kinases C terminal D1098_03500 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D1098_03500 PF14572 Phosphoribosyl synthetase-associated domain D1098_03505 PF01180 Dihydroorotate dehydrogenase D1098_03510 PF00456 Transketolase, thiamine diphosphate binding domain D1098_03510 PF17831 Pyruvate dehydrogenase E1 component middle domain D1098_03515 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1098_03515 PF02817 e3 binding domain D1098_03515 PF00364 Biotin-requiring enzyme D1098_03520 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1098_03520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1098_03555 PF00149 Calcineurin-like phosphoesterase D1098_03555 PF02872 5'-nucleotidase, C-terminal domain D1098_03560 PF01219 Prokaryotic diacylglycerol kinase D1098_03565 PF00375 Sodium:dicarboxylate symporter family D1098_03570 PF00753 Metallo-beta-lactamase superfamily D1098_03570 PF13567 Domain of unknown function (DUF4131) D1098_03570 PF03772 Competence protein D1098_03575 PF02547 Queuosine biosynthesis protein D1098_03580 PF01933 Uncharacterised protein family UPF0052 D1098_03585 PF01594 AI-2E family transporter D1098_03590 PF13649 Methyltransferase domain D1098_03595 PF03889 Alternative ribosome-rescue factor A D1098_03605 PF00149 Calcineurin-like phosphoesterase D1098_03610 PF04172 LrgB-like family D1098_03615 PF03788 LrgA family D1098_03620 PF08206 Ribonuclease B OB domain D1098_03620 PF00773 RNB domain D1098_03620 PF00575 S1 RNA binding domain D1098_03640 PF13649 Methyltransferase domain D1098_03645 PF00561 alpha/beta hydrolase fold D1098_03650 PF17206 SeqA protein N-terminal domain D1098_03650 PF03925 SeqA protein C-terminal domain D1098_03655 PF00501 AMP-binding enzyme D1098_03660 PF00924 Mechanosensitive ion channel D1098_03660 PF12795 Mechanosensitive ion channel porin domain D1098_03660 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1098_03665 PF00924 Mechanosensitive ion channel D1098_03665 PF12795 Mechanosensitive ion channel porin domain D1098_03665 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1098_03670 PF01264 Chorismate synthase D1098_03675 PF03411 Penicillin-insensitive murein endopeptidase D1098_03685 PF01751 Toprim domain D1098_03685 PF01131 DNA topoisomerase D1098_03690 PF03840 Preprotein translocase SecG subunit D1098_03700 PF13180 PDZ domain D1098_03705 PF02224 Cytidylate kinase D1098_03710 PF00575 S1 RNA binding domain D1098_03715 PF00216 Bacterial DNA-binding protein D1098_03720 PF06305 Lipopolysaccharide assembly protein A domain D1098_03725 PF18073 Rubredoxin metal binding domain D1098_03730 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1098_03735 PF01253 Translation initiation factor SUI1 D1098_03745 PF04474 Protein of unknown function (DUF554) D1098_03750 PF02441 Flavoprotein D1098_03755 PF04247 Invasion gene expression up-regulator, SirB D1098_03760 PF04751 Protein of unknown function (DUF615) D1098_03765 PF01523 Putative modulator of DNA gyrase D1098_03770 PF10369 Small subunit of acetolactate synthase D1098_03775 PF00205 Thiamine pyrophosphate enzyme, central domain D1098_03775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1098_03775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1098_03780 PF00484 Carbonic anhydrase D1098_03785 PF00313 'Cold-shock' DNA-binding domain D1098_03795 PF01702 Queuine tRNA-ribosyltransferase D1098_03800 PF01814 Hemerythrin HHE cation binding domain D1098_03810 PF08239 Bacterial SH3 domain D1098_03815 PF01384 Phosphate transporter family D1098_03820 PF01865 Protein of unknown function DUF47 D1098_03825 PF00005 ABC transporter D1098_03830 PF01032 FecCD transport family D1098_03835 PF01032 FecCD transport family D1098_03840 PF01497 Periplasmic binding protein D1098_03845 PF03796 DnaB-like helicase C terminal domain D1098_03845 PF00772 DnaB-like helicase N terminal domain D1098_03850 PF05166 YcgL domain D1098_03855 PF03477 ATP cone domain D1098_03860 PF01842 ACT domain D1098_03860 PF00696 Amino acid kinase family D1098_03865 PF04363 Protein of unknown function (DUF496) D1098_03870 PF02541 Ppx/GppA phosphatase family D1098_03875 PF04074 YhcH/YjgK/YiaL D1098_03880 PF01418 Helix-turn-helix domain, rpiR family D1098_03880 PF01380 SIS domain D1098_03885 PF01555 DNA methylase D1098_03895 PF00271 Helicase conserved C-terminal domain D1098_03895 PF00176 SNF2 family N-terminal domain D1098_03900 PF00266 Aminotransferase class-V D1098_03905 PF01053 Cys/Met metabolism PLP-dependent enzyme D1098_03910 PF00155 Aminotransferase class I and II D1098_03915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1098_03920 PF00696 Amino acid kinase family D1098_03920 PF00583 Acetyltransferase (GNAT) family D1098_03925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_03925 PF03466 LysR substrate binding domain D1098_03930 PF08272 Topoisomerase I zinc-ribbon-like D1098_03930 PF01751 Toprim domain D1098_03930 PF01396 Topoisomerase DNA binding C4 zinc finger D1098_03930 PF01131 DNA topoisomerase D1098_03935 PF17176 tRNA-binding domain D1098_03935 PF05127 Helicase D1098_03935 PF13718 GNAT acetyltransferase 2 D1098_03940 PF02130 Uncharacterized protein family UPF0054 D1098_03945 PF02391 MoaE protein D1098_03950 PF02597 ThiS family D1098_03955 PF01967 MoaC family D1098_03960 PF06463 Molybdenum Cofactor Synthesis C D1098_03960 PF04055 Radical SAM superfamily D1098_03965 PF03264 NapC/NirT cytochrome c family, N-terminal region D1098_03970 PF00384 Molybdopterin oxidoreductase D1098_03970 PF18364 Molybdopterin oxidoreductase N-terminal domain D1098_03970 PF01568 Molydopterin dinucleotide binding domain D1098_03975 PF01565 FAD binding domain D1098_03975 PF09330 D-lactate dehydrogenase, membrane binding D1098_03980 PF04241 Protein of unknown function (DUF423) D1098_03985 PF18125 RlmM ferredoxin-like domain D1098_03985 PF01728 FtsJ-like methyltransferase D1098_03990 PF01113 Dihydrodipicolinate reductase, N-terminus D1098_03990 PF05173 Dihydrodipicolinate reductase, C-terminus D1098_03995 PF01053 Cys/Met metabolism PLP-dependent enzyme D1098_04000 PF00156 Phosphoribosyl transferase domain D1098_04005 PF14718 Soluble lytic murein transglycosylase L domain D1098_04005 PF01464 Transglycosylase SLT domain D1098_04010 PF07690 Major Facilitator Superfamily D1098_04020 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D1098_04020 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1098_04025 PF09285 Elongation factor P, C-terminal D1098_04025 PF08207 Elongation factor P (EF-P) KOW-like domain D1098_04025 PF01132 Elongation factor P (EF-P) OB domain D1098_04035 PF04055 Radical SAM superfamily D1098_04040 PF01336 OB-fold nucleic acid binding domain D1098_04040 PF00152 tRNA synthetases class II (D, K and N) D1098_04045 PF00654 Voltage gated chloride channel D1098_04050 PF00929 Exonuclease D1098_04050 PF08411 Exonuclease C-terminal D1098_04060 PF02811 PHP domain D1098_04070 PF10518 TAT (twin-arginine translocation) pathway signal sequence D1098_04070 PF04261 Dyp-type peroxidase family D1098_04075 PF09375 Imelysin D1098_04080 PF12344 Ultra-violet resistance protein B D1098_04080 PF04851 Type III restriction enzyme, res subunit D1098_04080 PF17757 UvrB interaction domain D1098_04080 PF00271 Helicase conserved C-terminal domain D1098_04080 PF02151 UvrB/uvrC motif D1098_04090 PF01850 PIN domain D1098_04095 PF13635 Domain of unknown function (DUF4143) D1098_04095 PF13173 AAA domain D1098_04100 PF00557 Metallopeptidase family M24 D1098_04100 PF05195 Aminopeptidase P, N-terminal domain D1098_04105 PF00155 Aminotransferase class I and II D1098_04110 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D1098_04110 PF02222 ATP-grasp domain D1098_04115 PF00710 Asparaginase, N-terminal D1098_04115 PF17763 Glutaminase/Asparaginase C-terminal domain D1098_04120 PF00731 AIR carboxylase D1098_04125 PF02798 Glutathione S-transferase, N-terminal domain D1098_04125 PF00043 Glutathione S-transferase, C-terminal domain D1098_04130 PF04386 Stringent starvation protein B D1098_04135 PF00325 Bacterial regulatory proteins, crp family D1098_04135 PF00027 Cyclic nucleotide-binding domain D1098_04140 PF00582 Universal stress protein family D1098_04145 PF02272 DHHA1 domain D1098_04145 PF01411 tRNA synthetases class II (A) D1098_04145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1098_04150 PF02599 Global regulator protein family D1098_04155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1098_04155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1098_04155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1098_04155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1098_04160 PF00483 Nucleotidyl transferase D1098_04170 PF13609 Gram-negative porin D1098_04185 PF00149 Calcineurin-like phosphoesterase D1098_04185 PF02872 5'-nucleotidase, C-terminal domain D1098_04190 PF00871 Acetokinase family D1098_04195 PF01515 Phosphate acetyl/butaryl transferase D1098_04195 PF07085 DRTGG domain D1098_04200 PF07411 Domain of unknown function (DUF1508) D1098_04205 PF13406 Transglycosylase SLT domain D1098_04210 PF01509 TruB family pseudouridylate synthase (N terminal domain) D1098_04210 PF16198 tRNA pseudouridylate synthase B C-terminal domain D1098_04210 PF09157 Pseudouridine synthase II TruB, C-terminal D1098_04215 PF02033 Ribosome-binding factor A D1098_04220 PF04760 Translation initiation factor IF-2, N-terminal region D1098_04220 PF11987 Translation-initiation factor 2 D1098_04220 PF00009 Elongation factor Tu GTP binding domain D1098_04225 PF00575 S1 RNA binding domain D1098_04225 PF08529 NusA N-terminal domain D1098_04225 PF13184 NusA-like KH domain D1098_04230 PF17384 RimP C-terminal SH3 domain D1098_04230 PF02576 RimP N-terminal domain D1098_04240 PF18766 SWI2/SNF2 ATPase D1098_04240 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D1098_04240 PF11867 Domain of unknown function (DUF3387) D1098_04250 PF01420 Type I restriction modification DNA specificity domain D1098_04255 PF02384 N-6 DNA Methylase D1098_04260 PF08245 Mur ligase middle domain D1098_04265 PF17848 Acetyl-coA carboxylase zinc finger domain D1098_04265 PF01039 Carboxyl transferase domain D1098_04270 PF03819 MazG nucleotide pyrophosphohydrolase domain D1098_04275 PF00486 Transcriptional regulatory protein, C terminal D1098_04275 PF00072 Response regulator receiver domain D1098_04285 PF02687 FtsX-like permease family D1098_04285 PF00005 ABC transporter D1098_04285 PF12704 MacB-like periplasmic core domain D1098_04290 PF01784 NIF3 (NGG1p interacting factor 3) D1098_04295 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D1098_04300 PF06005 Cell division protein ZapB D1098_04305 PF00265 Thymidine kinase D1098_04310 PF00814 Glycoprotease family D1098_04315 PF00793 DAHP synthetase I family D1098_04320 PF04228 Putative neutral zinc metallopeptidase D1098_04325 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D1098_04325 PF17854 FtsK alpha domain D1098_04325 PF01580 FtsK/SpoIIIE family D1098_04325 PF09397 Ftsk gamma domain D1098_04330 PF01037 Lrp/AsnC ligand binding domain D1098_04335 PF01612 3'-5' exonuclease D1098_04335 PF00570 HRDC domain D1098_04340 PF01047 MarR family D1098_04340 PF00480 ROK family D1098_04355 PF00877 NlpC/P60 family D1098_04360 PF00216 Bacterial DNA-binding protein D1098_04365 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D1098_04365 PF01588 Putative tRNA binding domain D1098_04365 PF03147 Ferredoxin-fold anticodon binding domain D1098_04365 PF03484 tRNA synthetase B5 domain D1098_04365 PF03483 B3/4 domain D1098_04370 PF01409 tRNA synthetases class II core domain (F) D1098_04370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D1098_04375 PF00881 Nitroreductase family D1098_04380 PF00375 Sodium:dicarboxylate symporter family D1098_04385 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) D1098_04390 PF16916 Dimerisation domain of Zinc Transporter D1098_04390 PF01545 Cation efflux family D1098_04400 PF03883 Peroxide stress protein YaaA D1098_04405 PF00380 Ribosomal protein S9/S16 D1098_04410 PF00572 Ribosomal protein L13 D1098_04415 PF06295 Protein of unknown function (DUF1043) D1098_04420 PF08335 GlnD PII-uridylyltransferase D1098_04420 PF01966 HD domain D1098_04425 PF03222 Tryptophan/tyrosine permease family D1098_04430 PF03222 Tryptophan/tyrosine permease family D1098_04435 PF00004 ATPase family associated with various cellular activities (AAA) D1098_04435 PF17862 AAA+ lid domain D1098_04435 PF06480 FtsH Extracellular D1098_04435 PF01434 Peptidase family M41 D1098_04440 PF01728 FtsJ-like methyltransferase D1098_04445 PF00571 CBS domain D1098_04445 PF00478 IMP dehydrogenase / GMP reductase domain D1098_04455 PF00117 Glutamine amidotransferase class-I D1098_04455 PF02540 NAD synthase D1098_04455 PF00958 GMP synthase C terminal domain D1098_04460 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1098_04460 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1098_04460 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1098_04460 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1098_04465 PF08942 Domain of unknown function (DUF1919) D1098_04475 PF12804 MobA-like NTP transferase domain D1098_04475 PF00132 Bacterial transferase hexapeptide (six repeats) D1098_04480 PF00873 AcrB/AcrD/AcrF family D1098_04485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1098_04490 PF00440 Bacterial regulatory proteins, tetR family D1098_04495 PF07208 Protein of unknown function (DUF1414) D1098_04500 PF00884 Sulfatase D1098_04500 PF11893 Domain of unknown function (DUF3413) D1098_04505 PF07690 Major Facilitator Superfamily D1098_04510 PF04310 MukB N-terminal D1098_04510 PF16330 MukB hinge domain D1098_04515 PF04288 MukE-like family D1098_04520 PF03882 MukF winged-helix domain D1098_04520 PF17193 MukF C-terminal domain D1098_04520 PF17192 MukF middle domain D1098_04525 PF00521 DNA gyrase/topoisomerase IV, subunit A D1098_04525 PF03989 DNA gyrase C-terminal domain, beta-propeller D1098_04530 PF00013 KH domain D1098_04530 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D1098_04530 PF01138 3' exoribonuclease family, domain 1 D1098_04530 PF03725 3' exoribonuclease family, domain 2 D1098_04530 PF00575 S1 RNA binding domain D1098_04540 PF03880 DbpA RNA binding domain D1098_04540 PF00271 Helicase conserved C-terminal domain D1098_04540 PF00270 DEAD/DEAH box helicase D1098_04545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1098_04550 PF01174 SNO glutamine amidotransferase family D1098_04555 PF01680 SOR/SNZ family D1098_04560 PF00392 Bacterial regulatory proteins, gntR family D1098_04560 PF00155 Aminotransferase class I and II D1098_04565 PF01765 Ribosome recycling factor D1098_04570 PF00696 Amino acid kinase family D1098_04575 PF00884 Sulfatase D1098_04580 PF00889 Elongation factor TS D1098_04585 PF00318 Ribosomal protein S2 D1098_04600 PF00528 Binding-protein-dependent transport system inner membrane component D1098_04610 PF05872 Bacterial protein of unknown function (DUF853) D1098_04620 PF00270 DEAD/DEAH box helicase D1098_04620 PF00271 Helicase conserved C-terminal domain D1098_04645 PF00263 Bacterial type II and III secretion system protein D1098_04645 PF03958 Bacterial type II/III secretion system short domain D1098_04660 PF00437 Type II/IV secretion system protein D1098_04695 PF11967 Recombination protein O N terminal D1098_04695 PF02565 Recombination protein O C terminal D1098_04700 PF01926 50S ribosome-binding GTPase D1098_04700 PF07650 KH domain D1098_04705 PF00035 Double-stranded RNA binding motif D1098_04705 PF14622 Ribonuclease-III-like D1098_04710 PF10502 Signal peptidase, peptidase S26 D1098_04715 PF00679 Elongation factor G C-terminus D1098_04715 PF00009 Elongation factor Tu GTP binding domain D1098_04715 PF06421 GTP-binding protein LepA C-terminus D1098_04715 PF03144 Elongation factor Tu domain 2 D1098_04720 PF02581 Thiamine monophosphate synthase D1098_04730 PF09084 NMT1/THI5 like D1098_04735 PF03070 TENA/THI-4/PQQC family D1098_04740 PF06968 Biotin and Thiamin Synthesis associated domain D1098_04740 PF04055 Radical SAM superfamily D1098_04750 PF02597 ThiS family D1098_04760 PF00528 Binding-protein-dependent transport system inner membrane component D1098_04770 PF01235 Sodium:alanine symporter family D1098_04775 PF03824 High-affinity nickel-transport protein D1098_04780 PF06226 Protein of unknown function (DUF1007) D1098_04915 PF03592 Terminase small subunit D1098_04935 PF00182 Chitinase class I D1098_04940 PF05106 Phage holin family (Lysis protein S) D1098_04950 PF17757 UvrB interaction domain D1098_04950 PF12344 Ultra-violet resistance protein B D1098_04950 PF04851 Type III restriction enzyme, res subunit D1098_04950 PF00271 Helicase conserved C-terminal domain D1098_04950 PF02151 UvrB/uvrC motif D1098_04990 PF03796 DnaB-like helicase C terminal domain D1098_04990 PF00772 DnaB-like helicase N terminal domain D1098_05055 PF03837 RecT family D1098_05065 PF10548 P22AR C-terminal domain D1098_05065 PF02498 BRO family, N-terminal domain D1098_05100 PF00145 C-5 cytosine-specific DNA methylase D1098_05120 PF01386 Ribosomal L25p family D1098_05125 PF00390 Malic enzyme, N-terminal domain D1098_05125 PF01515 Phosphate acetyl/butaryl transferase D1098_05125 PF03949 Malic enzyme, NAD binding domain D1098_05130 PF02698 DUF218 domain D1098_05135 PF18030 RimK PreATP-grasp domain D1098_05135 PF08443 RimK-like ATP-grasp domain D1098_05140 PF00881 Nitroreductase family D1098_05170 PF02627 Carboxymuconolactone decarboxylase family D1098_05175 PF00912 Transglycosylase D1098_05180 PF01371 Trp repressor protein D1098_05185 PF03548 Outer membrane lipoprotein carrier protein LolA D1098_05200 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D1098_05200 PF01367 5'-3' exonuclease, C-terminal SAM fold D1098_05200 PF01612 3'-5' exonuclease D1098_05200 PF00476 DNA polymerase family A D1098_05210 PF12441 CopG antitoxin of type II toxin-antitoxin system D1098_05215 PF00290 Tryptophan synthase alpha chain D1098_05220 PF00291 Pyridoxal-phosphate dependent enzyme D1098_05225 PF00106 short chain dehydrogenase D1098_05230 PF03692 Putative zinc- or iron-chelating domain D1098_05235 PF01268 Formate--tetrahydrofolate ligase D1098_05240 PF01906 Putative heavy-metal-binding D1098_05245 PF01725 Ham1 family D1098_05255 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D1098_05255 PF07730 Histidine kinase D1098_05255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1098_05255 PF00672 HAMP domain D1098_05265 PF01389 OmpA-like transmembrane domain D1098_05265 PF00691 OmpA family D1098_05270 PF01368 DHH family D1098_05270 PF17768 RecJ OB domain D1098_05270 PF02272 DHHA1 domain D1098_05275 PF13098 Thioredoxin-like domain D1098_05275 PF10411 Disulfide bond isomerase protein N-terminus D1098_05280 PF01551 Peptidase family M23 D1098_05280 PF04225 Opacity-associated protein A LysM-like domain D1098_05285 PF00005 ABC transporter D1098_05290 PF02779 Transketolase, pyrimidine binding domain D1098_05290 PF16870 2-oxoglutarate dehydrogenase C-terminal D1098_05290 PF00676 Dehydrogenase E1 component D1098_05290 PF16078 2-oxoglutarate dehydrogenase N-terminus D1098_05295 PF02817 e3 binding domain D1098_05295 PF00364 Biotin-requiring enzyme D1098_05295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1098_05300 PF04393 Protein of unknown function (DUF535) D1098_05305 PF00549 CoA-ligase D1098_05305 PF08442 ATP-grasp domain D1098_05310 PF00549 CoA-ligase D1098_05310 PF02629 CoA binding domain D1098_05315 PF13407 Periplasmic binding protein domain D1098_05320 PF03553 Na+/H+ antiporter family D1098_05325 PF00816 H-NS histone family D1098_05330 PF02652 L-lactate permease D1098_05335 PF02754 Cysteine-rich domain D1098_05340 PF02589 LUD domain D1098_05340 PF13183 4Fe-4S dicluster domain D1098_05340 PF11870 Domain of unknown function (DUF3390) D1098_05345 PF02589 LUD domain D1098_05355 PF02698 DUF218 domain D1098_05360 PF00561 alpha/beta hydrolase fold D1098_05365 PF13230 Glutamine amidotransferases class-II D1098_05370 PF00950 ABC 3 transport family D1098_05375 PF00004 ATPase family associated with various cellular activities (AAA) D1098_05375 PF12002 MgsA AAA+ ATPase C terminal D1098_05375 PF16193 AAA C-terminal domain D1098_05380 PF04093 rod shape-determining protein MreD D1098_05385 PF04085 rod shape-determining protein MreC D1098_05395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D1098_05395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D1098_05400 PF01641 SelR domain D1098_05405 PF00180 Isocitrate/isopropylmalate dehydrogenase D1098_05410 PF07119 Protein of unknown function (DUF1375) D1098_05420 PF02578 Multi-copper polyphenol oxidoreductase laccase D1098_05425 PF01042 Endoribonuclease L-PSP D1098_05430 PF04245 37-kD nucleoid-associated bacterial protein D1098_05435 PF04355 SmpA / OmlA family D1098_05440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D1098_05440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D1098_05450 PF00156 Phosphoribosyl transferase domain D1098_05455 PF02674 Colicin V production protein D1098_05460 PF00075 RNase H D1098_05465 PF00764 Arginosuccinate synthase D1098_05470 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1098_05475 PF00768 D-alanyl-D-alanine carboxypeptidase D1098_05480 PF00535 Glycosyl transferase family 2 D1098_05485 PF01985 CRS1 / YhbY (CRM) domain D1098_05490 PF01569 PAP2 superfamily D1098_05495 PF00480 ROK family D1098_05500 PF16123 Hydroxyacylglutathione hydrolase C-terminus D1098_05500 PF00753 Metallo-beta-lactamase superfamily D1098_05505 PF01255 Putative undecaprenyl diphosphate synthase D1098_05515 PF02163 Peptidase family M50 D1098_05520 PF01103 Surface antigen D1098_05520 PF07244 Surface antigen variable number repeat D1098_05530 PF00132 Bacterial transferase hexapeptide (six repeats) D1098_05530 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D1098_05535 PF07977 FabA-like domain D1098_05540 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D1098_05540 PF00132 Bacterial transferase hexapeptide (six repeats) D1098_05545 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D1098_05545 PF13288 DXP reductoisomerase C-terminal domain D1098_05545 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D1098_05550 PF13291 ACT domain D1098_05550 PF04607 Region found in RelA / SpoT proteins D1098_05550 PF02824 TGS domain D1098_05555 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D1098_05555 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D1098_05555 PF01488 Shikimate / quinate 5-dehydrogenase D1098_05560 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D1098_05560 PF01926 50S ribosome-binding GTPase D1098_05565 PF00294 pfkB family carbohydrate kinase D1098_05565 PF01467 Cytidylyltransferase-like D1098_05570 PF00156 Phosphoribosyl transferase domain D1098_05575 PF00639 PPIC-type PPIASE domain D1098_05575 PF09312 SurA N-terminal domain D1098_05580 PF00398 Ribosomal RNA adenine dimethylase D1098_05590 PF13193 AMP-binding enzyme C-terminal domain D1098_05590 PF00501 AMP-binding enzyme D1098_05600 PF03872 Anti sigma-E protein RseA, N-terminal domain D1098_05600 PF03873 Anti sigma-E protein RseA, C-terminal domain D1098_05605 PF08281 Sigma-70, region 4 D1098_05605 PF04542 Sigma-70 region 2 D1098_05610 PF08502 LeuA allosteric (dimerisation) domain D1098_05610 PF00682 HMGL-like D1098_05620 PF13533 Biotin-lipoyl like D1098_05625 PF01758 Sodium Bile acid symporter family D1098_05630 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) D1098_05635 PF00883 Cytosol aminopeptidase family, catalytic domain D1098_05635 PF12404 Peptidase D1098_05640 PF01380 SIS domain D1098_05640 PF00571 CBS domain D1098_05645 PF01272 Transcription elongation factor, GreA/GreB, C-term D1098_05645 PF03449 Transcription elongation factor, N-terminal D1098_05650 PF00885 6,7-dimethyl-8-ribityllumazine synthase D1098_05655 PF00925 GTP cyclohydrolase II D1098_05655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D1098_05660 PF00677 Lumazine binding domain D1098_05665 PF01872 RibD C-terminal domain D1098_05665 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1098_05670 PF13183 4Fe-4S dicluster domain D1098_05670 PF02754 Cysteine-rich domain D1098_05675 PF00890 FAD binding domain D1098_05680 PF01266 FAD dependent oxidoreductase D1098_05680 PF04324 BFD-like [2Fe-2S] binding domain D1098_05685 PF03009 Glycerophosphoryl diester phosphodiesterase family D1098_05690 PF07690 Major Facilitator Superfamily D1098_05695 PF00004 ATPase family associated with various cellular activities (AAA) D1098_05695 PF02190 ATP-dependent protease La (LON) substrate-binding domain D1098_05695 PF05362 Lon protease (S16) C-terminal proteolytic domain D1098_05700 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1098_05700 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1098_05705 PF00230 Major intrinsic protein D1098_05710 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D1098_05715 PF03471 Transporter associated domain D1098_05715 PF00571 CBS domain D1098_05720 PF00795 Carbon-nitrogen hydrolase D1098_05725 PF13361 UvrD-like helicase C-terminal domain D1098_05725 PF00580 UvrD/REP helicase N-terminal domain D1098_05725 PF12705 PD-(D/E)XK nuclease superfamily D1098_05730 PF01554 MatE D1098_05735 PF13416 Bacterial extracellular solute-binding protein D1098_05740 PF01025 GrpE D1098_05745 PF04284 Protein of unknown function (DUF441) D1098_05750 PF11898 Domain of unknown function (DUF3418) D1098_05750 PF00270 DEAD/DEAH box helicase D1098_05750 PF00271 Helicase conserved C-terminal domain D1098_05750 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D1098_05750 PF04408 Helicase associated domain (HA2) D1098_05755 PF03797 Autotransporter beta-domain D1098_05755 PF00082 Subtilase family D1098_05760 PF04393 Protein of unknown function (DUF535) D1098_05765 PF03167 Uracil DNA glycosylase superfamily D1098_05770 PF01228 Glycine radical D1098_05775 PF00717 Peptidase S24-like D1098_05780 PF00877 NlpC/P60 family D1098_05785 PF01261 Xylose isomerase-like TIM barrel D1098_05800 PF07690 Major Facilitator Superfamily D1098_05805 PF00849 RNA pseudouridylate synthase D1098_05805 PF01479 S4 domain D1098_05815 PF13378 Enolase C-terminal domain-like D1098_05820 PF08264 Anticodon-binding domain of tRNA D1098_05820 PF09334 tRNA synthetases class I (M) D1098_05820 PF01588 Putative tRNA binding domain D1098_05825 PF00334 Nucleoside diphosphate kinase D1098_05830 PF00343 Carbohydrate phosphorylase D1098_05835 PF08323 Starch synthase catalytic domain D1098_05835 PF00534 Glycosyl transferases group 1 D1098_05840 PF00483 Nucleotidyl transferase D1098_05845 PF18390 Glycogen debranching enzyme C-terminal domain D1098_05845 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D1098_05845 PF00128 Alpha amylase, catalytic domain D1098_05850 PF00128 Alpha amylase, catalytic domain D1098_05850 PF02806 Alpha amylase, C-terminal all-beta domain D1098_05850 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D1098_05855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1098_05855 PF00381 PTS HPr component phosphorylation site D1098_05860 PF00294 pfkB family carbohydrate kinase D1098_05865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D1098_05870 PF04011 LemA family D1098_05880 PF04536 TPM domain D1098_05885 PF00311 Phosphoenolpyruvate carboxylase D1098_05895 PF03968 OstA-like protein D1098_05900 PF00005 ABC transporter D1098_05900 PF12399 Branched-chain amino acid ATP-binding cassette transporter D1098_05905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1098_05910 PF03668 P-loop ATPase protein family D1098_05915 PF01494 FAD binding domain D1098_05935 PF01494 FAD binding domain D1098_05940 PF00293 NUDIX domain D1098_05960 PF02562 PhoH-like protein D1098_05965 PF07840 FadR C-terminal domain D1098_05965 PF00392 Bacterial regulatory proteins, gntR family D1098_05970 PF06450 Bacterial Na+/H+ antiporter B (NhaB) D1098_05975 PF02600 Disulfide bond formation protein DsbB D1098_05980 PF01053 Cys/Met metabolism PLP-dependent enzyme D1098_05985 PF01717 Cobalamin-independent synthase, Catalytic domain D1098_05990 PF00156 Phosphoribosyl transferase domain D1098_05995 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D1098_06000 PF01510 N-acetylmuramoyl-L-alanine amidase D1098_06005 PF00849 RNA pseudouridylate synthase D1098_06010 PF00176 SNF2 family N-terminal domain D1098_06010 PF18337 RapA N-terminal Tudor like domain D1098_06010 PF00271 Helicase conserved C-terminal domain D1098_06010 PF12137 RNA polymerase recycling family C-terminal D1098_06010 PF18339 RapA N-terminal Tudor like domain 1 D1098_06015 PF01966 HD domain D1098_06015 PF13286 Phosphohydrolase-associated domain D1098_06020 PF01938 TRAM domain D1098_06020 PF05958 tRNA (Uracil-5-)-methyltransferase D1098_06030 PF00899 ThiF family D1098_06035 PF00994 Probable molybdopterin binding domain D1098_06035 PF03454 MoeA C-terminal region (domain IV) D1098_06035 PF03453 MoeA N-terminal region (domain I and II) D1098_06045 PF12848 ABC transporter D1098_06045 PF00005 ABC transporter D1098_06050 PF05128 Domain of unknown function (DUF697) D1098_06055 PF01207 Dihydrouridine synthase (Dus) D1098_06060 PF05099 Tellurite resistance protein TerB D1098_06060 PF00226 DnaJ domain D1098_06070 PF00691 OmpA family D1098_06075 PF04052 TolB amino-terminal domain D1098_06075 PF07676 WD40-like Beta Propeller Repeat D1098_06080 PF06519 TolA C-terminal D1098_06085 PF02472 Biopolymer transport protein ExbD/TolR D1098_06090 PF01618 MotA/TolQ/ExbB proton channel family D1098_06095 PF03061 Thioesterase superfamily D1098_06110 PF02322 Cytochrome bd terminal oxidase subunit II D1098_06115 PF01654 Cytochrome bd terminal oxidase subunit I D1098_06120 PF17274 Family of unknown function (DUF5339) D1098_06125 PF00899 ThiF family D1098_06130 PF12848 ABC transporter D1098_06130 PF16326 ABC transporter C-terminal domain D1098_06130 PF00005 ABC transporter D1098_06135 PF18766 SWI2/SNF2 ATPase D1098_06135 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D1098_06135 PF12008 Type I restriction and modification enzyme - subunit R C terminal D1098_06145 PF01420 Type I restriction modification DNA specificity domain D1098_06160 PF03989 DNA gyrase C-terminal domain, beta-propeller D1098_06160 PF00521 DNA gyrase/topoisomerase IV, subunit A D1098_06170 PF05496 Holliday junction DNA helicase RuvB P-loop domain D1098_06170 PF05491 RuvB C-terminal winged helix domain D1098_06170 PF17864 RuvB AAA lid domain D1098_06175 PF07499 RuvA, C-terminal domain D1098_06175 PF01330 RuvA N terminal domain D1098_06180 PF00528 Binding-protein-dependent transport system inner membrane component D1098_06185 PF00528 Binding-protein-dependent transport system inner membrane component D1098_06190 PF08402 TOBE domain D1098_06190 PF00005 ABC transporter D1098_06195 PF13361 UvrD-like helicase C-terminal domain D1098_06195 PF00580 UvrD/REP helicase N-terminal domain D1098_06200 PF01026 TatD related DNase D1098_06205 PF01541 GIY-YIG catalytic domain D1098_06205 PF08459 UvrC Helix-hairpin-helix N-terminal D1098_06205 PF02151 UvrB/uvrC motif D1098_06215 PF01066 CDP-alcohol phosphatidyltransferase D1098_06220 PF01027 Inhibitor of apoptosis-promoting Bax1 D1098_06225 PF04358 DsrC like protein D1098_06230 PF01297 Zinc-uptake complex component A periplasmic D1098_06235 PF00005 ABC transporter D1098_06240 PF04073 Aminoacyl-tRNA editing domain D1098_06245 PF00291 Pyridoxal-phosphate dependent enzyme D1098_06250 PF01042 Endoribonuclease L-PSP D1098_06260 PF00156 Phosphoribosyl transferase domain D1098_06265 PF12170 DNA polymerase III tau subunit V interacting with alpha D1098_06265 PF12169 DNA polymerase III subunits gamma and tau domain III D1098_06270 PF00005 ABC transporter D1098_06275 PF01061 ABC-2 type transporter D1098_06285 PF00528 Binding-protein-dependent transport system inner membrane component D1098_06290 PF03459 TOBE domain D1098_06290 PF00005 ABC transporter D1098_06295 PF03364 Polyketide cyclase / dehydrase and lipid transport D1098_06300 PF03658 RnfH family Ubiquitin D1098_06305 PF02321 Outer membrane efflux protein D1098_06310 PF00625 Guanylate kinase D1098_06315 PF00156 Phosphoribosyl transferase domain D1098_06320 PF01546 Peptidase family M20/M25/M40 D1098_06320 PF07687 Peptidase dimerisation domain D1098_06345 PF13538 UvrD-like helicase C-terminal domain D1098_06350 PF01168 Alanine racemase, N-terminal domain D1098_06350 PF00842 Alanine racemase, C-terminal domain D1098_06355 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D1098_06355 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D1098_06360 PF03447 Homoserine dehydrogenase, NAD binding domain D1098_06360 PF00742 Homoserine dehydrogenase D1098_06360 PF01842 ACT domain D1098_06360 PF00696 Amino acid kinase family D1098_06360 PF13840 ACT domain D1098_06365 PF00288 GHMP kinases N terminal domain D1098_06365 PF08544 GHMP kinases C terminal D1098_06370 PF00291 Pyridoxal-phosphate dependent enzyme D1098_06375 PF07497 Rho termination factor, RNA-binding domain D1098_06375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1098_06375 PF07498 Rho termination factor, N-terminal domain D1098_06385 PF17484 N-Lobe handle Tf-binding protein B D1098_06385 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1098_06385 PF17483 C-lobe handle domain of Tf-binding protein B D1098_06390 PF00202 Aminotransferase class-III D1098_06395 PF00696 Amino acid kinase family D1098_06400 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1098_06405 PF00293 NUDIX domain D1098_06415 PF07516 SecA Wing and Scaffold domain D1098_06415 PF01043 SecA preprotein cross-linking domain D1098_06415 PF07517 SecA DEAD-like domain D1098_06415 PF02810 SEC-C motif D1098_06440 PF01722 BolA-like protein D1098_06450 PF04452 RNA methyltransferase D1098_06455 PF02622 Uncharacterized ACR, COG1678 D1098_06460 PF03652 Holliday junction resolvase D1098_06465 PF00300 Histidine phosphatase superfamily (branch 1) D1098_06470 PF00849 RNA pseudouridylate synthase D1098_06475 PF03471 Transporter associated domain D1098_06475 PF01595 Cyclin M transmembrane N-terminal domain D1098_06475 PF00571 CBS domain D1098_06490 PF00453 Ribosomal protein L20 D1098_06495 PF01632 Ribosomal protein L35 D1098_06500 PF05198 Translation initiation factor IF-3, N-terminal domain D1098_06500 PF00707 Translation initiation factor IF-3, C-terminal domain D1098_06505 PF05643 Putative bacterial lipoprotein (DUF799) D1098_06515 PF03783 Curli production assembly/transport component CsgG D1098_06520 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1098_06520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1098_06520 PF02824 TGS domain D1098_06520 PF03129 Anticodon binding domain D1098_06530 PF09614 CRISPR-associated protein (Cas_Csy2) D1098_06535 PF09615 CRISPR-associated protein (Cas_Csy3) D1098_06545 PF01867 CRISPR associated protein Cas1 D1098_06550 PF18019 HD domain D1098_06555 PF01513 ATP-NAD kinase D1098_06560 PF00464 Serine hydroxymethyltransferase D1098_06570 PF02780 Transketolase, C-terminal domain D1098_06570 PF02779 Transketolase, pyrimidine binding domain D1098_06570 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D1098_06575 PF00459 Inositol monophosphatase family D1098_06580 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1098_06580 PF00588 SpoU rRNA Methylase family D1098_06585 PF01810 LysE type translocator D1098_06590 PF04608 Phosphatidylglycerophosphatase A D1098_06595 PF02769 AIR synthase related protein, C-terminal domain D1098_06595 PF00586 AIR synthase related protein, N-terminal domain D1098_06600 PF01029 NusB family D1098_06605 PF00263 Bacterial type II and III secretion system protein D1098_06605 PF03958 Bacterial type II/III secretion system short domain D1098_06625 PF11104 Type IV pilus assembly protein PilM; D1098_06630 PF17092 Penicillin-binding protein OB-like domain D1098_06630 PF00905 Penicillin binding protein transpeptidase domain D1098_06630 PF00912 Transglycosylase D1098_06635 PF01202 Shikimate kinase D1098_06640 PF01761 3-dehydroquinate synthase D1098_06645 PF02086 D12 class N6 adenine-specific DNA methyltransferase D1098_06650 PF00209 Sodium:neurotransmitter symporter family D1098_06655 PF02954 Bacterial regulatory protein, Fis family D1098_06660 PF01207 Dihydrouridine synthase (Dus) D1098_06665 PF00300 Histidine phosphatase superfamily (branch 1) D1098_06670 PF00224 Pyruvate kinase, barrel domain D1098_06670 PF02887 Pyruvate kinase, alpha/beta domain D1098_06675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1098_06680 PF00793 DAHP synthetase I family D1098_06685 PF01817 Chorismate mutase type II D1098_06685 PF02153 Prephenate dehydrogenase D1098_06695 PF00929 Exonuclease D1098_06700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1098_06710 PF11739 Dicarboxylate transport D1098_06720 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D1098_06725 PF12627 Probable RNA and SrmB- binding site of polymerase A D1098_06725 PF12626 Polymerase A arginine-rich C-terminus D1098_06725 PF01743 Poly A polymerase head domain D1098_06730 PF01258 Prokaryotic dksA/traR C4-type zinc finger D1098_06745 PF03279 Bacterial lipid A biosynthesis acyltransferase D1098_06750 PF02508 Rnf-Nqr subunit, membrane protein D1098_06755 PF04205 FMN-binding domain D1098_06760 PF03116 NQR2, RnfD, RnfE family D1098_06765 PF03458 UPF0126 domain D1098_06770 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D1098_06770 PF12838 4Fe-4S dicluster domain D1098_06770 PF13375 RnfC Barrel sandwich hybrid domain D1098_06775 PF04060 Putative Fe-S cluster D1098_06780 PF02508 Rnf-Nqr subunit, membrane protein D1098_06795 PF13419 Haloacid dehalogenase-like hydrolase D1098_06800 PF04381 Putative exonuclease, RdgC D1098_06805 PF03807 NADP oxidoreductase coenzyme F420-dependent D1098_06805 PF14748 Pyrroline-5-carboxylate reductase dimerisation D1098_06810 PF12832 MFS_1 like family D1098_06820 PF04400 (Na+)-NQR maturation NqrM D1098_06825 PF02424 ApbE family D1098_06830 PF00970 Oxidoreductase FAD-binding domain D1098_06830 PF00111 2Fe-2S iron-sulfur cluster binding domain D1098_06830 PF00175 Oxidoreductase NAD-binding domain D1098_06835 PF02508 Rnf-Nqr subunit, membrane protein D1098_06840 PF02508 Rnf-Nqr subunit, membrane protein D1098_06845 PF04205 FMN-binding domain D1098_06850 PF03116 NQR2, RnfD, RnfE family D1098_06855 PF11973 NQRA C-terminal domain D1098_06855 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) D1098_06860 PF01521 Iron-sulphur cluster biosynthesis D1098_06860 PF01106 NifU-like domain D1098_06865 PF03477 ATP cone domain D1098_06865 PF02867 Ribonucleotide reductase, barrel domain D1098_06865 PF00317 Ribonucleotide reductase, all-alpha domain D1098_06875 PF01207 Dihydrouridine synthase (Dus) D1098_06880 PF11892 Domain of unknown function (DUF3412) D1098_06880 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases D1098_06880 PF03641 Possible lysine decarboxylase D1098_06885 PF11398 Protein of unknown function (DUF2813) D1098_06890 PF00708 Acylphosphatase D1098_06895 PF02595 Glycerate kinase family D1098_06900 PF02447 GntP family permease D1098_06905 PF05651 Putative sugar diacid recognition D1098_06905 PF17853 GGDEF-like domain D1098_06905 PF13556 PucR C-terminal helix-turn-helix domain D1098_06910 PF00330 Aconitase family (aconitate hydratase) D1098_06915 PF00694 Aconitase C-terminal domain D1098_06920 PF10063 Uncharacterized integral membrane protein (DUF2301) D1098_06925 PF00117 Glutamine amidotransferase class-I D1098_06925 PF06418 CTP synthase N-terminus D1098_06930 PF00710 Asparaginase, N-terminal D1098_06930 PF17763 Glutaminase/Asparaginase C-terminal domain D1098_06940 PF03466 LysR substrate binding domain D1098_06940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_06945 PF13419 Haloacid dehalogenase-like hydrolase D1098_06950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_06950 PF03466 LysR substrate binding domain D1098_06955 PF03193 RsgA GTPase D1098_06960 PF01351 Ribonuclease HII D1098_06965 PF00950 ABC 3 transport family D1098_06970 PF00950 ABC 3 transport family D1098_06975 PF01230 HIT domain D1098_06990 PF00753 Metallo-beta-lactamase superfamily D1098_06995 PF05951 Bacterial protein of unknown function (DUF882) D1098_07000 PF03734 L,D-transpeptidase catalytic domain D1098_07005 PF00595 PDZ domain D1098_07005 PF03572 Peptidase family S41 D1098_07005 PF17804 Tail specific protease N-terminal domain D1098_07005 PF11818 C-terminal domain of tail specific protease (DUF3340) D1098_07010 PF04352 ProQ/FINO family D1098_07015 PF00313 'Cold-shock' DNA-binding domain D1098_07020 PF06968 Biotin and Thiamin Synthesis associated domain D1098_07020 PF04055 Radical SAM superfamily D1098_07030 PF00303 Thymidylate synthase D1098_07035 PF00216 Bacterial DNA-binding protein D1098_07040 PF04222 Protein of unknown function (DUF416) D1098_07045 PF01208 Uroporphyrinogen decarboxylase (URO-D) D1098_07050 PF03695 Uncharacterised protein family (UPF0149) D1098_07055 PF05164 Cell division protein ZapA D1098_07065 PF01812 5-formyltetrahydrofolate cyclo-ligase family D1098_07070 PF01614 Bacterial transcriptional regulator D1098_07070 PF09339 IclR helix-turn-helix domain D1098_07075 PF00474 Sodium:solute symporter family D1098_07080 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D1098_07080 PF00171 Aldehyde dehydrogenase family D1098_07080 PF01619 Proline dehydrogenase D1098_07080 PF14850 DNA-binding domain of Proline dehydrogenase D1098_07085 PF00860 Permease family D1098_07090 PF13018 Extended Signal Peptide of Type V secretion system D1098_07090 PF05658 Head domain of trimeric autotransporter adhesin D1098_07090 PF05662 Coiled stalk of trimeric autotransporter adhesin D1098_07090 PF05658 Head domain of trimeric autotransporter adhesin D1098_07090 PF03895 YadA-like membrane anchor domain D1098_07090 PF13018 Extended Signal Peptide of Type V secretion system D1098_07090 PF03895 YadA-like membrane anchor domain D1098_07090 PF05658 Head domain of trimeric autotransporter adhesin D1098_07090 PF05662 Coiled stalk of trimeric autotransporter adhesin D1098_07090 PF05662 Coiled stalk of trimeric autotransporter adhesin D1098_07090 PF05658 Head domain of trimeric autotransporter adhesin D1098_07090 PF03895 YadA-like membrane anchor domain D1098_07090 PF13018 Extended Signal Peptide of Type V secretion system D1098_07090 PF05662 Coiled stalk of trimeric autotransporter adhesin D1098_07090 PF03895 YadA-like membrane anchor domain D1098_07090 PF13018 Extended Signal Peptide of Type V secretion system D1098_07095 PF13018 Extended Signal Peptide of Type V secretion system D1098_07095 PF03895 YadA-like membrane anchor domain D1098_07095 PF05662 Coiled stalk of trimeric autotransporter adhesin D1098_07095 PF05658 Head domain of trimeric autotransporter adhesin D1098_07100 PF03916 Polysulphide reductase, NrfD D1098_07105 PF13247 4Fe-4S dicluster domain D1098_07115 PF02335 Cytochrome c552 D1098_07120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1098_07120 PF00205 Thiamine pyrophosphate enzyme, central domain D1098_07120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1098_07130 PF00920 Dehydratase family D1098_07135 PF02535 ZIP Zinc transporter D1098_07145 PF01926 50S ribosome-binding GTPase D1098_07150 PF06877 Regulator of ribonuclease activity B D1098_07155 PF01206 Sulfurtransferase TusA D1098_07160 PF00557 Metallopeptidase family M24 D1098_07165 PF04186 FxsA cytoplasmic membrane protein D1098_07175 PF00849 RNA pseudouridylate synthase D1098_07180 PF00293 NUDIX domain D1098_07180 PF09297 NADH pyrophosphatase zinc ribbon domain D1098_07185 PF06078 Bacterial protein of unknown function (DUF937) D1098_07190 PF02348 Cytidylyltransferase D1098_07195 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1098_07200 PF02733 Dak1 domain D1098_07205 PF02734 DAK2 domain D1098_07210 PF00381 PTS HPr component phosphorylation site D1098_07210 PF03610 PTS system fructose IIA component D1098_07210 PF05524 PEP-utilising enzyme, N-terminal D1098_07210 PF00391 PEP-utilising enzyme, mobile domain D1098_07220 PF00581 Rhodanese-like domain D1098_07225 PF01618 MotA/TolQ/ExbB proton channel family D1098_07230 PF02472 Biopolymer transport protein ExbD/TolR D1098_07235 PF03544 Gram-negative bacterial TonB protein C-terminal D1098_07240 PF02575 YbaB/EbfC DNA-binding family D1098_07245 PF02132 RecR protein D1098_07245 PF13662 Toprim domain D1098_07250 PF00462 Glutaredoxin D1098_07255 PF01063 Amino-transferase class IV D1098_07260 PF01042 Endoribonuclease L-PSP D1098_07270 PF06146 Phosphate-starvation-inducible E D1098_07275 PF00005 ABC transporter D1098_07275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1098_07280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1098_07280 PF00005 ABC transporter D1098_07285 PF00528 Binding-protein-dependent transport system inner membrane component D1098_07285 PF12911 N-terminal TM domain of oligopeptide transport permease C D1098_07290 PF00528 Binding-protein-dependent transport system inner membrane component D1098_07295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1098_07300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1098_07340 PF04277 Oxaloacetate decarboxylase, gamma chain D1098_07345 PF00364 Biotin-requiring enzyme D1098_07345 PF02436 Conserved carboxylase domain D1098_07345 PF00682 HMGL-like D1098_07350 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit D1098_07355 PF03831 PhnA domain D1098_07355 PF08274 PhnA Zinc-Ribbon D1098_07360 PF03150 Di-haem cytochrome c peroxidase D1098_07360 PF00034 Cytochrome c D1098_07360 PF14376 Haem-binding domain D1098_07365 PF02594 Uncharacterised ACR, YggU family COG1872 D1098_07370 PF02325 YGGT family D1098_07375 PF04320 Protein with unknown function (DUF469) D1098_07380 PF02390 Putative methyltransferase D1098_07385 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D1098_07385 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D1098_07390 PF02504 Fatty acid synthesis protein D1098_07395 PF01783 Ribosomal L32p protein family D1098_07400 PF02620 Large ribosomal RNA subunit accumulation protein YceD D1098_07405 PF01578 Cytochrome C assembly protein D1098_07410 PF00571 CBS domain D1098_07410 PF03471 Transporter associated domain D1098_07410 PF01595 Cyclin M transmembrane N-terminal domain D1098_07415 PF00209 Sodium:neurotransmitter symporter family D1098_07425 PF03830 PTS system sorbose subfamily IIB component D1098_07425 PF03610 PTS system fructose IIA component D1098_07430 PF03609 PTS system sorbose-specific iic component D1098_07435 PF03613 PTS system mannose/fructose/sorbose family IID component D1098_07440 PF06173 Protein of unknown function (DUF986) D1098_07445 PF01238 Phosphomannose isomerase type I D1098_07460 PF00009 Elongation factor Tu GTP binding domain D1098_07460 PF03143 Elongation factor Tu C-terminal domain D1098_07460 PF03144 Elongation factor Tu domain 2 D1098_07465 PF03144 Elongation factor Tu domain 2 D1098_07465 PF00679 Elongation factor G C-terminus D1098_07465 PF14492 Elongation Factor G, domain II D1098_07465 PF03764 Elongation factor G, domain IV D1098_07465 PF00009 Elongation factor Tu GTP binding domain D1098_07470 PF00177 Ribosomal protein S7p/S5e D1098_07475 PF00164 Ribosomal protein S12/S23 D1098_07480 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1098_07485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1098_07495 PF08525 Opacity-associated protein A N-terminal motif D1098_07495 PF04225 Opacity-associated protein A LysM-like domain D1098_07505 PF02666 Phosphatidylserine decarboxylase D1098_07510 PF04262 Glutamate-cysteine ligase D1098_07510 PF18419 ATP-grasp-like domain D1098_07510 PF02655 ATP-grasp domain D1098_07520 PF03222 Tryptophan/tyrosine permease family D1098_07525 PF04175 Protein of unknown function (DUF406) D1098_07530 PF00248 Aldo/keto reductase family D1098_07535 PF00501 AMP-binding enzyme D1098_07540 PF06039 Malate:quinone oxidoreductase (Mqo) D1098_07560 PF02653 Branched-chain amino acid transport system / permease component D1098_07565 PF00005 ABC transporter D1098_07570 PF13407 Periplasmic binding protein domain D1098_07575 PF00691 OmpA family D1098_07575 PF01389 OmpA-like transmembrane domain D1098_07580 PF13183 4Fe-4S dicluster domain D1098_07580 PF01565 FAD binding domain D1098_07580 PF02913 FAD linked oxidases, C-terminal domain D1098_07585 PF03061 Thioesterase superfamily D1098_07590 PF14849 YidC periplasmic domain D1098_07590 PF02096 60Kd inner membrane protein D1098_07595 PF03264 NapC/NirT cytochrome c family, N-terminal region D1098_07600 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D1098_07605 PF12837 4Fe-4S binding domain D1098_07605 PF12801 4Fe-4S binding domain D1098_07610 PF12800 4Fe-4S binding domain D1098_07610 PF12838 4Fe-4S dicluster domain D1098_07615 PF00384 Molybdopterin oxidoreductase D1098_07615 PF01568 Molydopterin dinucleotide binding domain D1098_07615 PF10518 TAT (twin-arginine translocation) pathway signal sequence D1098_07615 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1098_07625 PF12838 4Fe-4S dicluster domain D1098_07625 PF13187 4Fe-4S dicluster domain D1098_07630 PF02525 Flavodoxin-like fold D1098_07645 PF12111 Polyribonucleotide phosphorylase C terminal D1098_07645 PF10150 Ribonuclease E/G family D1098_07645 PF00575 S1 RNA binding domain D1098_07655 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family D1098_07660 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D1098_07665 PF01297 Zinc-uptake complex component A periplasmic D1098_07680 PF03412 Peptidase C39 family D1098_07680 PF00005 ABC transporter D1098_07680 PF00664 ABC transporter transmembrane region D1098_07685 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1098_07685 PF02382 N-terminal domain in RTX protein D1098_07685 PF08339 RTX C-terminal domain D1098_07690 PF02794 RTX toxin acyltransferase family D1098_07700 PF00528 Binding-protein-dependent transport system inner membrane component D1098_07705 PF00005 ABC transporter D1098_07705 PF08402 TOBE domain D1098_07710 PF02875 Mur ligase family, glutamate ligase domain D1098_07710 PF08245 Mur ligase middle domain D1098_07710 PF01225 Mur ligase family, catalytic domain D1098_07715 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D1098_07725 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1098_07725 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1098_07730 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D1098_07735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1098_07735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1098_07735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1098_07735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1098_07740 PF00585 C-terminal regulatory domain of Threonine dehydratase D1098_07740 PF00291 Pyridoxal-phosphate dependent enzyme D1098_07745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1098_07755 PF00230 Major intrinsic protein D1098_07765 PF01980 tRNA-methyltransferase O D1098_07765 PF18389 TrmO C-terminal domain D1098_07770 PF06250 YhcG PDDEXK nuclease domain D1098_07770 PF17761 DUF1016 N-terminal domain D1098_07775 PF01040 UbiA prenyltransferase family D1098_07780 PF01521 Iron-sulphur cluster biosynthesis D1098_07785 PF01061 ABC-2 type transporter D1098_07790 PF00005 ABC transporter D1098_07800 PF01501 Glycosyl transferase family 8 D1098_07800 PF00535 Glycosyl transferase family 2 D1098_07805 PF03275 UDP-galactopyranose mutase D1098_07815 PF00795 Carbon-nitrogen hydrolase D1098_07815 PF00535 Glycosyl transferase family 2 D1098_07825 PF02397 Bacterial sugar transferase D1098_07830 PF16363 GDP-mannose 4,6 dehydratase D1098_07835 PF01165 Ribosomal protein S21 D1098_07840 PF10410 DnaB-helicase binding domain of primase D1098_07840 PF08275 DNA primase catalytic core, N-terminal domain D1098_07840 PF01807 CHC2 zinc finger D1098_07840 PF08278 DNA primase DnaG DnaB-binding D1098_07845 PF04546 Sigma-70, non-essential region D1098_07845 PF03979 Sigma-70 factor, region 1.1 D1098_07845 PF04542 Sigma-70 region 2 D1098_07845 PF04539 Sigma-70 region 3 D1098_07845 PF04545 Sigma-70, region 4 D1098_07845 PF00140 Sigma-70 factor, region 1.2 D1098_07850 PF00579 tRNA synthetases class I (W and Y) D1098_07850 PF01479 S4 domain D1098_07860 PF08206 Ribonuclease B OB domain D1098_07860 PF00773 RNB domain D1098_07860 PF08461 Ribonuclease R winged-helix domain D1098_07860 PF17876 Cold shock domain D1098_07860 PF00575 S1 RNA binding domain D1098_07865 PF00578 AhpC/TSA family D1098_07870 PF00440 Bacterial regulatory proteins, tetR family D1098_07875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_07875 PF03466 LysR substrate binding domain D1098_07880 PF00462 Glutaredoxin D1098_07880 PF08534 Redoxin D1098_07895 PF08543 Phosphomethylpyrimidine kinase D1098_07905 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D1098_07910 PF07731 Multicopper oxidase D1098_07910 PF07732 Multicopper oxidase D1098_07915 PF01553 Acyltransferase D1098_07920 PF08534 Redoxin D1098_07925 PF01926 50S ribosome-binding GTPase D1098_07925 PF12631 MnmE helical domain D1098_07925 PF10396 GTP-binding protein TrmE N-terminus D1098_07930 PF05167 Uncharacterised ACR (DUF711) D1098_07940 PF17954 Quercetinase C-terminal cupin domain D1098_07940 PF02678 Pirin D1098_07945 PF00210 Ferritin-like domain D1098_07960 PF12805 FUSC-like inner membrane protein yccS D1098_07965 PF02142 MGS-like domain D1098_07970 PF14821 Threonine synthase N terminus D1098_07970 PF00291 Pyridoxal-phosphate dependent enzyme D1098_07980 PF08264 Anticodon-binding domain of tRNA D1098_07980 PF10458 Valyl tRNA synthetase tRNA binding arm D1098_07980 PF00133 tRNA synthetases class I (I, L, M and V) D1098_07995 PF13673 Acetyltransferase (GNAT) domain D1098_08000 PF04364 DNA polymerase III chi subunit, HolC D1098_08005 PF01476 LysM domain D1098_08010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1098_08010 PF05698 Bacterial trigger factor protein (TF) C-terminus D1098_08010 PF05697 Bacterial trigger factor protein (TF) D1098_08015 PF00581 Rhodanese-like domain D1098_08020 PF02556 Preprotein translocase subunit SecB D1098_08025 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D1098_08025 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D1098_08030 PF00132 Bacterial transferase hexapeptide (six repeats) D1098_08030 PF06426 Serine acetyltransferase, N-terminal D1098_08035 PF00009 Elongation factor Tu GTP binding domain D1098_08035 PF03144 Elongation factor Tu domain 2 D1098_08035 PF03143 Elongation factor Tu C-terminal domain D1098_08060 PF00485 Phosphoribulokinase / Uridine kinase family D1098_08065 PF08534 Redoxin D1098_08070 PF03918 Cytochrome C biogenesis protein D1098_08075 PF03918 Cytochrome C biogenesis protein D1098_08080 PF00994 Probable molybdopterin binding domain D1098_08085 PF00543 Nitrogen regulatory protein P-II D1098_08090 PF01252 Signal peptidase (SPase) II D1098_08095 PF02401 LytB protein D1098_08100 PF03937 Flavinator of succinate dehydrogenase D1098_08110 PF04055 Radical SAM superfamily D1098_08115 PF02798 Glutathione S-transferase, N-terminal domain D1098_08115 PF00043 Glutathione S-transferase, C-terminal domain D1098_08120 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D1098_08120 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D1098_08130 PF02313 Fumarate reductase subunit D D1098_08135 PF02300 Fumarate reductase subunit C D1098_08140 PF13085 2Fe-2S iron-sulfur cluster binding domain D1098_08140 PF13183 4Fe-4S dicluster domain D1098_08145 PF00890 FAD binding domain D1098_08145 PF02910 Fumarate reductase flavoprotein C-term D1098_08150 PF00152 tRNA synthetases class II (D, K and N) D1098_08155 PF01678 Diaminopimelate epimerase D1098_08160 PF03605 Anaerobic c4-dicarboxylate membrane transporter D1098_08165 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D1098_08175 PF03702 Anhydro-N-acetylmuramic acid kinase D1098_08180 PF01380 SIS domain D1098_08200 PF01523 Putative modulator of DNA gyrase D1098_08205 PF01171 PP-loop family D1098_08205 PF09179 TilS substrate binding domain D1098_08205 PF11734 TilS substrate C-terminal domain D1098_08215 PF02899 Phage integrase, N-terminal SAM-like domain D1098_08215 PF00589 Phage integrase family D1098_08270 PF03808 Glycosyl transferase WecB/TagA/CpsF family D1098_08275 PF06899 WzyE protein, O-antigen assembly polymerase D1098_08280 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 D1098_08285 PF03063 Prismane/CO dehydrogenase family D1098_08295 PF01943 Polysaccharide biosynthesis protein D1098_08300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D1098_08310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D1098_08310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D1098_08310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D1098_08315 PF02350 UDP-N-acetylglucosamine 2-epimerase D1098_08325 PF00953 Glycosyl transferase family 4 D1098_08330 PF00202 Aminotransferase class-III D1098_08340 PF03023 Lipid II flippase MurJ D1098_08345 PF01649 Ribosomal protein S20 D1098_08350 PF02080 TrkA-C domain D1098_08350 PF02254 TrkA-N domain D1098_08355 PF01029 NusB family D1098_08355 PF01189 16S rRNA methyltransferase RsmB/F D1098_08360 PF09107 Elongation factor SelB, winged helix D1098_08360 PF09106 Elongation factor SelB, winged helix D1098_08360 PF03144 Elongation factor Tu domain 2 D1098_08360 PF00009 Elongation factor Tu GTP binding domain D1098_08365 PF03841 L-seryl-tRNA selenium transferase D1098_08375 PF00258 Flavodoxin D1098_08380 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1098_08380 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1098_08395 PF07715 TonB-dependent Receptor Plug Domain D1098_08395 PF00593 TonB dependent receptor D1098_08400 PF17484 N-Lobe handle Tf-binding protein B D1098_08400 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1098_08400 PF17483 C-lobe handle domain of Tf-binding protein B D1098_08405 PF02472 Biopolymer transport protein ExbD/TolR D1098_08410 PF01618 MotA/TolQ/ExbB proton channel family D1098_08420 PF03956 Lysine exporter LysO D1098_08435 PF06821 Serine hydrolase D1098_08440 PF17311 Family of unknown function (DUF5358) D1098_08445 PF00571 CBS domain D1098_08445 PF01380 SIS domain D1098_08450 PF02348 Cytidylyltransferase D1098_08455 PF00793 DAHP synthetase I family D1098_08475 PF02563 Polysaccharide biosynthesis/export protein D1098_08485 PF01061 ABC-2 type transporter D1098_08490 PF00005 ABC transporter D1098_08495 PF00005 ABC transporter D1098_08500 PF00551 Formyl transferase D1098_08500 PF02911 Formyl transferase, C-terminal domain D1098_08510 PF01205 Uncharacterized protein family UPF0029 D1098_08510 PF09186 Domain of unknown function (DUF1949) D1098_08515 PF02386 Cation transport protein D1098_08520 PF12724 Flavodoxin domain D1098_08525 PF01741 Large-conductance mechanosensitive channel, MscL D1098_08530 PF04055 Radical SAM superfamily D1098_08535 PF03099 Biotin/lipoate A/B protein ligase family D1098_08540 PF04359 Protein of unknown function (DUF493) D1098_08545 PF00768 D-alanyl-D-alanine carboxypeptidase D1098_08545 PF07943 Penicillin-binding protein 5, C-terminal domain D1098_08550 PF03330 Lytic transglycolase D1098_08555 PF01098 Cell cycle protein D1098_08560 PF00905 Penicillin binding protein transpeptidase domain D1098_08560 PF03717 Penicillin-binding Protein dimerisation domain D1098_08565 PF02590 Predicted SPOUT methyltransferase D1098_08575 PF00488 MutS domain V D1098_08575 PF05192 MutS domain III D1098_08575 PF05188 MutS domain II D1098_08575 PF01624 MutS domain I D1098_08575 PF05190 MutS family domain IV D1098_08580 PF00005 ABC transporter D1098_08585 PF00528 Binding-protein-dependent transport system inner membrane component D1098_08590 PF03313 Serine dehydratase alpha chain D1098_08595 PF04405 Domain of Unknown function (DUF542) D1098_08595 PF01814 Hemerythrin HHE cation binding domain D1098_08600 PF00893 Small Multidrug Resistance protein D1098_08605 PF04175 Protein of unknown function (DUF406) D1098_08620 PF01774 UreD urease accessory protein D1098_08625 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1098_08630 PF01730 UreF D1098_08635 PF02814 UreE urease accessory protein, N-terminal domain D1098_08635 PF05194 UreE urease accessory protein, C-terminal domain D1098_08645 PF00449 Urease alpha-subunit, N-terminal domain D1098_08645 PF01979 Amidohydrolase family D1098_08650 PF00699 Urease beta subunit D1098_08655 PF00547 Urease, gamma subunit D1098_08665 PF00005 ABC transporter D1098_08675 PF01891 Cobalt uptake substrate-specific transmembrane region D1098_08685 PF10670 Domain of unknown function (DUF4198) D1098_08690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_08690 PF03466 LysR substrate binding domain D1098_08700 PF02080 TrkA-C domain D1098_08700 PF03600 Citrate transporter D1098_08705 PF05068 Mannitol repressor D1098_08710 PF01232 Mannitol dehydrogenase Rossmann domain D1098_08710 PF08125 Mannitol dehydrogenase C-terminal domain D1098_08715 PF02378 Phosphotransferase system, EIIC D1098_08715 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D1098_08715 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1098_08720 PF01380 SIS domain D1098_08725 PF08220 DeoR-like helix-turn-helix domain D1098_08725 PF00455 DeoR C terminal sensor domain D1098_08740 PF18071 HMW1C N-terminal D1098_08740 PF18254 HMW1 domain 2 D1098_08745 PF18693 TRAM domain D1098_08745 PF04055 Radical SAM superfamily D1098_08745 PF00919 Uncharacterized protein family UPF0004 D1098_08750 PF01048 Phosphorylase superfamily D1098_08760 PF04102 SlyX D1098_08765 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D1098_08765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1098_08770 PF08348 YheO-like PAS domain D1098_08770 PF13309 HTH domain D1098_08775 PF02635 DsrE/DsrF-like family D1098_08780 PF02635 DsrE/DsrF-like family D1098_08785 PF04077 DsrH like protein D1098_08810 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D1098_08815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1098_08815 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1098_08820 PF00231 ATP synthase D1098_08825 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1098_08825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1098_08825 PF00306 ATP synthase alpha/beta chain, C terminal domain D1098_08830 PF00213 ATP synthase delta (OSCP) subunit D1098_08835 PF00430 ATP synthase B/B' CF(0) D1098_08840 PF00137 ATP synthase subunit C D1098_08845 PF00119 ATP synthase A chain D1098_08855 PF02527 rRNA small subunit methyltransferase G D1098_08860 PF13932 GidA associated domain D1098_08860 PF01134 Glucose inhibited division protein A D1098_08870 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1098_08875 PF02810 SEC-C motif D1098_08885 PF03613 PTS system mannose/fructose/sorbose family IID component D1098_08890 PF03609 PTS system sorbose-specific iic component D1098_08895 PF03610 PTS system fructose IIA component D1098_08895 PF03830 PTS system sorbose subfamily IIB component D1098_08905 PF02447 GntP family permease D1098_08910 PF01202 Shikimate kinase D1098_08915 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D1098_08915 PF00356 Bacterial regulatory proteins, lacI family D1098_08920 PF00356 Bacterial regulatory proteins, lacI family D1098_08925 PF05025 RbsD / FucU transport protein family D1098_08930 PF00005 ABC transporter D1098_08935 PF02653 Branched-chain amino acid transport system / permease component D1098_08940 PF13407 Periplasmic binding protein domain D1098_08945 PF00294 pfkB family carbohydrate kinase D1098_08950 PF00384 Molybdopterin oxidoreductase D1098_08950 PF01568 Molydopterin dinucleotide binding domain D1098_08950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1098_08955 PF12800 4Fe-4S binding domain D1098_08955 PF13247 4Fe-4S dicluster domain D1098_08960 PF04976 DMSO reductase anchor subunit (DmsC) D1098_08965 PF02613 Nitrate reductase delta subunit D1098_08970 PF12838 4Fe-4S dicluster domain D1098_08970 PF00037 4Fe-4S binding domain D1098_08990 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D1098_08990 PF02769 AIR synthase related protein, C-terminal domain D1098_08990 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D1098_08995 PF00455 DeoR C terminal sensor domain D1098_08995 PF08220 DeoR-like helix-turn-helix domain D1098_09000 PF07881 L-fucose isomerase, first N-terminal domain D1098_09000 PF02952 L-fucose isomerase, C-terminal domain D1098_09000 PF07882 L-fucose isomerase, second N-terminal domain D1098_09005 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1098_09005 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1098_09010 PF05025 RbsD / FucU transport protein family D1098_09015 PF00596 Class II Aldolase and Adducin N-terminal domain D1098_09020 PF07690 Major Facilitator Superfamily D1098_09025 PF00465 Iron-containing alcohol dehydrogenase D1098_09030 PF07274 Protein of unknown function (DUF1440) D1098_09035 PF00528 Binding-protein-dependent transport system inner membrane component D1098_09040 PF00528 Binding-protein-dependent transport system inner membrane component D1098_09045 PF00005 ABC transporter D1098_09050 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1098_09055 PF05159 Capsule polysaccharide biosynthesis protein D1098_09060 PF05159 Capsule polysaccharide biosynthesis protein D1098_09070 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1098_09075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1098_09080 PF03611 PTS system sugar-specific permease component D1098_09090 PF00455 DeoR C terminal sensor domain D1098_09090 PF08220 DeoR-like helix-turn-helix domain D1098_09095 PF01261 Xylose isomerase-like TIM barrel D1098_09100 PF00596 Class II Aldolase and Adducin N-terminal domain D1098_09105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1098_09105 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D1098_09130 PF01370 NAD dependent epimerase/dehydratase family D1098_09135 PF01327 Polypeptide deformylase D1098_09140 PF02481 DNA recombination-mediator protein A D1098_09140 PF17782 DprA winged helix domain D1098_09145 PF03169 OPT oligopeptide transporter protein D1098_09150 PF03611 PTS system sugar-specific permease component D1098_09160 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D1098_09165 PF02357 Transcription termination factor nusG D1098_09165 PF00467 KOW motif D1098_09170 PF00298 Ribosomal protein L11, RNA binding domain D1098_09170 PF03946 Ribosomal protein L11, N-terminal domain D1098_09175 PF00687 Ribosomal protein L1p/L10e family D1098_09180 PF00466 Ribosomal protein L10 D1098_09185 PF16320 Ribosomal protein L7/L12 dimerisation domain D1098_09185 PF00542 Ribosomal protein L7/L12 C-terminal domain D1098_09230 PF04563 RNA polymerase beta subunit D1098_09230 PF00562 RNA polymerase Rpb2, domain 6 D1098_09230 PF04560 RNA polymerase Rpb2, domain 7 D1098_09230 PF10385 RNA polymerase beta subunit external 1 domain D1098_09230 PF04561 RNA polymerase Rpb2, domain 2 D1098_09230 PF04565 RNA polymerase Rpb2, domain 3 D1098_09235 PF04983 RNA polymerase Rpb1, domain 3 D1098_09235 PF04998 RNA polymerase Rpb1, domain 5 D1098_09235 PF00623 RNA polymerase Rpb1, domain 2 D1098_09235 PF04997 RNA polymerase Rpb1, domain 1 D1098_09235 PF05000 RNA polymerase Rpb1, domain 4 D1098_09245 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D1098_09250 PF01850 PIN domain D1098_09270 PF10431 C-terminal, D2-small domain, of ClpB protein D1098_09270 PF00004 ATPase family associated with various cellular activities (AAA) D1098_09270 PF07724 AAA domain (Cdc48 subfamily) D1098_09275 PF00227 Proteasome subunit D1098_09280 PF17746 SfsA N-terminal OB domain D1098_09280 PF03749 Sugar fermentation stimulation protein RE domain D1098_09285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1098_09290 PF00730 HhH-GPD superfamily base excision DNA repair protein D1098_09290 PF14815 NUDIX domain D1098_09295 PF04362 Bacterial Fe(2+) trafficking D1098_09300 PF01464 Transglycosylase SLT domain D1098_09300 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D1098_09325 PF02881 SRP54-type protein, helical bundle domain D1098_09325 PF00448 SRP54-type protein, GTPase domain D1098_09325 PF02978 Signal peptide binding domain D1098_09330 PF00149 Calcineurin-like phosphoesterase D1098_09330 PF02872 5'-nucleotidase, C-terminal domain D1098_09335 PF01494 FAD binding domain D1098_09340 PF01381 Helix-turn-helix D1098_09345 PF05973 Phage derived protein Gp49-like (DUF891) D1098_09350 PF01078 Magnesium chelatase, subunit ChlI D1098_09350 PF13335 Magnesium chelatase, subunit ChlI C-terminal D1098_09360 PF00561 alpha/beta hydrolase fold D1098_09365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1098_09365 PF16582 Middle domain of thiamine pyrophosphate D1098_09365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1098_09370 PF02348 Cytidylyltransferase D1098_09370 PF13472 GDSL-like Lipase/Acylhydrolase family D1098_09375 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase D1098_09380 PF00480 ROK family D1098_09385 PF00701 Dihydrodipicolinate synthetase family D1098_09390 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1098_09395 PF01979 Amidohydrolase family D1098_09400 PF10415 Fumarase C C-terminus D1098_09400 PF00206 Lyase D1098_09410 PF00338 Ribosomal protein S10p/S20e D1098_09415 PF00297 Ribosomal protein L3 D1098_09420 PF00573 Ribosomal protein L4/L1 family D1098_09425 PF00276 Ribosomal protein L23 D1098_09430 PF00181 Ribosomal Proteins L2, RNA binding domain D1098_09430 PF03947 Ribosomal Proteins L2, C-terminal domain D1098_09435 PF00203 Ribosomal protein S19 D1098_09440 PF00237 Ribosomal protein L22p/L17e D1098_09445 PF07650 KH domain D1098_09445 PF00189 Ribosomal protein S3, C-terminal domain D1098_09450 PF00252 Ribosomal protein L16p/L10e D1098_09455 PF00831 Ribosomal L29 protein D1098_09460 PF00366 Ribosomal protein S17 D1098_09465 PF00238 Ribosomal protein L14p/L23e D1098_09470 PF00467 KOW motif D1098_09470 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D1098_09475 PF00281 Ribosomal protein L5 D1098_09475 PF00673 ribosomal L5P family C-terminus D1098_09480 PF00253 Ribosomal protein S14p/S29e D1098_09485 PF00410 Ribosomal protein S8 D1098_09490 PF00347 Ribosomal protein L6 D1098_09495 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D1098_09500 PF00333 Ribosomal protein S5, N-terminal domain D1098_09500 PF03719 Ribosomal protein S5, C-terminal domain D1098_09505 PF00327 Ribosomal protein L30p/L7e D1098_09510 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D1098_09515 PF00344 SecY translocase D1098_09520 PF00444 Ribosomal protein L36 D1098_09525 PF00416 Ribosomal protein S13/S18 D1098_09530 PF00411 Ribosomal protein S11 D1098_09535 PF01479 S4 domain D1098_09535 PF00163 Ribosomal protein S4/S9 N-terminal domain D1098_09540 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D1098_09540 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D1098_09540 PF01000 RNA polymerase Rpb3/RpoA insert domain D1098_09545 PF01196 Ribosomal protein L17 D1098_09550 PF00886 Ribosomal protein S16 D1098_09555 PF01782 RimM N-terminal domain D1098_09555 PF05239 PRC-barrel domain D1098_09560 PF01746 tRNA (Guanine-1)-methyltransferase D1098_09565 PF01245 Ribosomal protein L19 D1098_09570 PF08007 Cupin superfamily protein D1098_09575 PF01497 Periplasmic binding protein D1098_09580 PF01032 FecCD transport family D1098_09585 PF00005 ABC transporter D1098_09590 PF00127 Copper binding proteins, plastocyanin/azurin family D1098_09605 PF02613 Nitrate reductase delta subunit D1098_09610 PF18364 Molybdopterin oxidoreductase N-terminal domain D1098_09610 PF00384 Molybdopterin oxidoreductase D1098_09610 PF01568 Molydopterin dinucleotide binding domain D1098_09620 PF02091 Glycyl-tRNA synthetase alpha subunit D1098_09625 PF04480 Protein of unknown function (DUF559) D1098_09635 PF02092 Glycyl-tRNA synthetase beta subunit D1098_09635 PF05746 DALR anticodon binding domain D1098_09640 PF17347 Family of unknown function (DUF5377) D1098_09645 PF00589 Phage integrase family D1098_09645 PF02899 Phage integrase, N-terminal SAM-like domain D1098_09660 PF00149 Calcineurin-like phosphoesterase D1098_09665 PF07509 Protein of unknown function (DUF1523) D1098_09670 PF01026 TatD related DNase D1098_09680 PF00005 ABC transporter D1098_09680 PF12704 MacB-like periplasmic core domain D1098_09680 PF02687 FtsX-like permease family D1098_09685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1098_09690 PF06629 MltA-interacting protein MipA D1098_09695 PF09115 DNA polymerase III, delta subunit, C terminal D1098_09700 PF02223 Thymidylate kinase D1098_09705 PF02618 YceG-like family D1098_09725 PF00550 Phosphopantetheine attachment site D1098_09730 PF00834 Ribulose-phosphate 3 epimerase family D1098_09735 PF01197 Ribosomal protein L31 D1098_09740 PF00444 Ribosomal protein L36 D1098_09745 PF00912 Transglycosylase D1098_09745 PF00905 Penicillin binding protein transpeptidase domain D1098_09745 PF14814 Bifunctional transglycosylase second domain D1098_09750 PF00378 Enoyl-CoA hydratase/isomerase D1098_09755 PF02824 TGS domain D1098_09755 PF04607 Region found in RelA / SpoT proteins D1098_09755 PF13291 ACT domain D1098_09760 PF01192 RNA polymerase Rpb6 D1098_09765 PF00271 Helicase conserved C-terminal domain D1098_09765 PF17191 RecG wedge domain D1098_09765 PF00270 DEAD/DEAH box helicase D1098_09780 PF03129 Anticodon binding domain D1098_09780 PF04073 Aminoacyl-tRNA editing domain D1098_09780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1098_09790 PF04542 Sigma-70 region 2 D1098_09790 PF08281 Sigma-70, region 4 D1098_09795 PF00174 Oxidoreductase molybdopterin binding domain D1098_09800 PF01794 Ferric reductase like transmembrane component D1098_09805 PF00140 Sigma-70 factor, region 1.2 D1098_09805 PF04542 Sigma-70 region 2 D1098_09805 PF04545 Sigma-70, region 4 D1098_09810 PF07690 Major Facilitator Superfamily D1098_09830 PF03590 Aspartate-ammonia ligase D1098_09835 PF01037 Lrp/AsnC ligand binding domain D1098_09835 PF13404 AsnC-type helix-turn-helix domain D1098_09840 PF01048 Phosphorylase superfamily D1098_09845 PF04345 Chorismate lyase D1098_09850 PF01177 Asp/Glu/Hydantoin racemase D1098_09880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D1098_09880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D1098_09885 PF00667 FAD binding domain D1098_09885 PF00175 Oxidoreductase NAD-binding domain D1098_09885 PF00258 Flavodoxin D1098_09900 PF00528 Binding-protein-dependent transport system inner membrane component D1098_09905 PF00528 Binding-protein-dependent transport system inner membrane component D1098_09910 PF12857 TOBE-like domain D1098_09910 PF17850 CysA C-terminal regulatory domain D1098_09910 PF00005 ABC transporter D1098_09915 PF01070 FMN-dependent dehydrogenase D1098_09920 PF08279 HTH domain D1098_09920 PF02237 Biotin protein ligase C terminal domain D1098_09920 PF03099 Biotin/lipoate A/B protein ligase family D1098_09925 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D1098_09925 PF01565 FAD binding domain D1098_09930 PF01389 OmpA-like transmembrane domain D1098_09930 PF00691 OmpA family D1098_09935 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D1098_09935 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D1098_09940 PF04403 Paraquat-inducible protein A D1098_09945 PF01841 Transglutaminase-like superfamily D1098_09955 PF00403 Heavy-metal-associated domain D1098_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1098_09965 PF03466 LysR substrate binding domain D1098_09970 PF00132 Bacterial transferase hexapeptide (six repeats) D1098_09970 PF14602 Hexapeptide repeat of succinyl-transferase D1098_09970 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D1098_09975 PF01220 Dehydroquinase class II D1098_09980 PF04488 Glycosyltransferase sugar-binding region containing DXD motif D1098_09985 PF00364 Biotin-requiring enzyme D1098_09990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1098_09990 PF02785 Biotin carboxylase C-terminal domain D1098_09990 PF00289 Biotin carboxylase, N-terminal domain D1098_09995 PF12804 MobA-like NTP transferase domain D1098_10000 PF06288 Protein of unknown function (DUF1040) D1098_10005 PF01323 DSBA-like thioredoxin domain D1098_10015 PF05036 Sporulation related domain D1098_10015 PF05036 Sporulation related domain D1098_10020 PF04445 Putative SAM-dependent methyltransferase D1098_10025 PF02557 D-alanyl-D-alanine carboxypeptidase D1098_10030 PF07687 Peptidase dimerisation domain D1098_10030 PF01546 Peptidase family M20/M25/M40 D1098_10035 PF03960 ArsC family D1098_10045 PF00809 Pterin binding enzyme D1098_10050 PF01479 S4 domain D1098_10050 PF00849 RNA pseudouridylate synthase D1098_10060 PF00924 Mechanosensitive ion channel D1098_10060 PF05552 Conserved TM helix D1098_10065 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1098_10065 PF02785 Biotin carboxylase C-terminal domain D1098_10065 PF00289 Biotin carboxylase, N-terminal domain D1098_10075 PF16187 Middle or third domain of peptidase_M16 D1098_10075 PF05193 Peptidase M16 inactive domain D1098_10075 PF00675 Insulinase (Peptidase family M16) D1098_10080 PF17946 RecC C-terminal domain D1098_10105 PF07977 FabA-like domain D1098_10110 PF13654 AAA domain D1098_10110 PF05362 Lon protease (S16) C-terminal proteolytic domain D1098_10115 PF06303 MatP N-terminal domain D1098_10115 PF17414 MatP C-terminal ribbon-helix-helix domain D1098_10120 PF00579 tRNA synthetases class I (W and Y) D1098_10125 PF13419 Haloacid dehalogenase-like hydrolase D1098_10135 PF01790 Prolipoprotein diacylglyceryl transferase D1098_10140 PF01925 Sulfite exporter TauE/SafE D1098_10145 PF00293 NUDIX domain D1098_10155 PF00719 Inorganic pyrophosphatase D1098_10160 PF05175 Methyltransferase small domain D1098_10165 PF03737 Aldolase/RraA D1098_10170 PF01226 Formate/nitrite transporter D1098_10185 PF00226 DnaJ domain D1098_10185 PF01556 DnaJ C terminal domain D1098_10185 PF00684 DnaJ central domain D1098_10190 PF00012 Hsp70 protein D1098_10195 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1098_10195 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1098_10205 PF13407 Periplasmic binding protein domain D1098_10210 PF00005 ABC transporter D1098_10215 PF02653 Branched-chain amino acid transport system / permease component D1098_10220 PF12833 Helix-turn-helix domain D1098_10225 PF05649 Peptidase family M13 D1098_10225 PF01431 Peptidase family M13 D1098_10230 PF10571 Uncharacterised protein family UPF0547 D1098_10235 PF00474 Sodium:solute symporter family D1098_10240 PF06196 Protein of unknown function (DUF997) D1098_10245 PF01340 Met Apo-repressor, MetJ D1098_10250 PF04333 MlaA lipoprotein D1098_10255 PF01263 Aldose 1-epimerase D1098_10270 PF14883 Hypothetical glycosyl hydrolase family 13 D1098_10270 PF01522 Polysaccharide deacetylase D1098_10275 PF00535 Glycosyl transferase family 2 D1098_10285 PF00121 Triosephosphate isomerase D1098_10290 PF01142 tRNA pseudouridine synthase D (TruD) D1098_10295 PF01975 Survival protein SurE D1098_10300 PF09335 SNARE associated Golgi protein D1098_10315 PF01476 LysM domain D1098_10315 PF01551 Peptidase family M23 D1098_10320 PF03352 Methyladenine glycosylase D1098_10330 PF07670 Nucleoside recognition D1098_10340 PF00762 Ferrochelatase D1098_10345 PF00468 Ribosomal protein L34 D1098_10350 PF00825 Ribonuclease P D1098_10355 PF01809 Putative membrane protein insertion efficiency factor D1098_10360 PF00120 Glutamine synthetase, catalytic domain D1098_10360 PF03951 Glutamine synthetase, beta-Grasp domain D1098_10365 PF00149 Calcineurin-like phosphoesterase D1098_10370 PF00293 NUDIX domain D1098_10375 PF06146 Phosphate-starvation-inducible E D1098_10380 PF01648 4'-phosphopantetheinyl transferase superfamily D1098_10385 PF00892 EamA-like transporter family D1098_10390 PF06965 Na+/H+ antiporter 1 D1098_10400 PF02580 D-Tyr-tRNA(Tyr) deacylase D1098_10405 PF03631 Virulence factor BrkB D1098_10410 PF00171 Aldehyde dehydrogenase family D1098_10415 PF07715 TonB-dependent Receptor Plug Domain D1098_10415 PF00593 TonB dependent receptor D1098_10420 PF07715 TonB-dependent Receptor Plug Domain D1098_10420 PF00593 TonB dependent receptor D1098_10430 PF00593 TonB dependent receptor D1098_10430 PF04886 PT repeat D1098_10430 PF07715 TonB-dependent Receptor Plug Domain D1098_10445 PF01119 DNA mismatch repair protein, C-terminal domain D1098_10445 PF08676 MutL C terminal dimerisation domain D1098_10450 PF08240 Alcohol dehydrogenase GroES-like domain D1098_10450 PF00107 Zinc-binding dehydrogenase D1098_10460 PF17209 Hfq protein D1098_10465 PF16360 GTP-binding GTPase Middle Region D1098_10465 PF13167 GTP-binding GTPase N-terminal D1098_10465 PF01926 50S ribosome-binding GTPase D1098_10470 PF03641 Possible lysine decarboxylase D1098_10475 PF03819 MazG nucleotide pyrophosphohydrolase domain D1098_10480 PF00027 Cyclic nucleotide-binding domain D1098_10480 PF13545 Crp-like helix-turn-helix domain D1098_10485 PF06794 Uncharacterised protein family (UPF0270) D1098_10490 PF00440 Bacterial regulatory proteins, tetR family D1098_10495 PF00692 dUTPase D1098_10500 PF04127 DNA / pantothenate metabolism flavoprotein D1098_10500 PF02441 Flavoprotein D1098_10505 PF04002 RadC-like JAB domain D1098_10510 PF00830 Ribosomal L28 family D1098_10515 PF00471 Ribosomal protein L33 D1098_10525 PF00202 Aminotransferase class-III D1098_10530 PF00282 Pyridoxal-dependent decarboxylase conserved domain D1098_10535 PF01206 Sulfurtransferase TusA D1098_10540 PF04143 Sulphur transport D1098_10545 PF04219 Protein of unknown function, DUF D1098_10550 PF05958 tRNA (Uracil-5-)-methyltransferase D1098_10575 PF01544 CorA-like Mg2+ transporter protein D1098_10580 PF01209 ubiE/COQ5 methyltransferase family D1098_10590 PF03109 ABC1 family D1098_10595 PF02416 mttA/Hcf106 family D1098_10605 PF00902 Sec-independent protein translocase protein (TatC) D1098_10610 PF00490 Delta-aminolevulinic acid dehydratase D1098_10620 PF06827 Zinc finger found in FPG and IleRS D1098_10620 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D1098_10620 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D1098_10625 PF05525 Branched-chain amino acid transport protein D1098_10635 PF00698 Acyl transferase domain D1098_10640 PF02677 Epoxyqueuosine reductase QueH D1098_10645 PF00348 Polyprenyl synthetase D1098_10655 PF03358 NADPH-dependent FMN reductase D1098_10660 PF07681 DoxX D1098_10665 PF00829 Ribosomal prokaryotic L21 protein D1098_10670 PF01016 Ribosomal L27 protein D1098_10675 PF00892 EamA-like transporter family D1098_10680 PF04575 Protein of unknown function (DUF560) D1098_10685 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1098_10690 PF00156 Phosphoribosyl transferase domain D1098_10695 PF05175 Methyltransferase small domain D1098_10695 PF08468 Methyltransferase small domain N-terminal D1098_10705 PF00583 Acetyltransferase (GNAT) family D1098_10710 PF00271 Helicase conserved C-terminal domain D1098_10710 PF00270 DEAD/DEAH box helicase D1098_10715 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D1098_10715 PF01243 Pyridoxamine 5'-phosphate oxidase D1098_10720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1098_10725 PF00171 Aldehyde dehydrogenase family D1098_10730 PF01184 GPR1/FUN34/yaaH family D1098_10735 PF00005 ABC transporter D1098_10740 PF01497 Periplasmic binding protein D1098_10745 PF01032 FecCD transport family D1098_10750 PF07715 TonB-dependent Receptor Plug Domain D1098_10750 PF00593 TonB dependent receptor D1098_10760 PF01259 SAICAR synthetase D1098_10765 PF01634 ATP phosphoribosyltransferase D1098_10765 PF08029 HisG, C-terminal domain D1098_10770 PF00815 Histidinol dehydrogenase D1098_10775 PF00155 Aminotransferase class I and II D1098_10785 PF00475 Imidazoleglycerol-phosphate dehydratase D1098_10795 PF17761 DUF1016 N-terminal domain D1098_10795 PF06250 YhcG PDDEXK nuclease domain D1098_10800 PF00117 Glutamine amidotransferase class-I D1098_10805 PF00977 Histidine biosynthesis protein D1098_10810 PF00977 Histidine biosynthesis protein D1098_10815 PF01502 Phosphoribosyl-AMP cyclohydrolase D1098_10815 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D1098_10820 PF02592 Putative vitamin uptake transporter D1098_10825 PF00557 Metallopeptidase family M24 D1098_10835 PF00356 Bacterial regulatory proteins, lacI family D1098_10835 PF13407 Periplasmic binding protein domain D1098_10840 PF08244 Glycosyl hydrolases family 32 C terminal D1098_10840 PF00251 Glycosyl hydrolases family 32 N-terminal domain D1098_10845 PF00294 pfkB family carbohydrate kinase D1098_10850 PF07732 Multicopper oxidase D1098_10855 PF12704 MacB-like periplasmic core domain D1098_10855 PF02687 FtsX-like permease family D1098_10860 PF00005 ABC transporter D1098_10865 PF02687 FtsX-like permease family D1098_10865 PF12704 MacB-like periplasmic core domain D1098_10870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1098_10870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1098_10875 PF00793 DAHP synthetase I family D1098_10880 PF13369 Transglutaminase-like superfamily D1098_10885 PF13847 Methyltransferase domain D1098_10885 PF17827 PrmC N-terminal domain D1098_10895 PF03462 PCRF domain D1098_10895 PF00472 RF-1 domain D1098_10900 PF00581 Rhodanese-like domain D1098_10905 PF04143 Sulphur transport