locus-tag class description J3K87_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain J3K87_00010 PF02767 DNA polymerase III beta subunit, central domain J3K87_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain J3K87_00015 PF02463 RecF/RecN/SMC N terminal domain J3K87_00020 PF00080 Copper/zinc superoxide dismutase (SODC) J3K87_00025 PF01118 Semialdehyde dehydrogenase, NAD binding domain J3K87_00025 PF02774 Semialdehyde dehydrogenase, dimerisation domain J3K87_00035 PF02684 Lipid-A-disaccharide synthetase J3K87_00040 PF08496 Peptidase family S49 N-terminal J3K87_00040 PF01343 Peptidase family S49 J3K87_00045 PF02381 MraZ protein, putative antitoxin-like J3K87_00050 PF01795 MraW methylase family J3K87_00055 PF04999 Cell division protein FtsL J3K87_00060 PF03717 Penicillin-binding Protein dimerisation domain J3K87_00060 PF00905 Penicillin binding protein transpeptidase domain J3K87_00065 PF08245 Mur ligase middle domain J3K87_00065 PF01225 Mur ligase family, catalytic domain J3K87_00065 PF02875 Mur ligase family, glutamate ligase domain J3K87_00070 PF08245 Mur ligase middle domain J3K87_00070 PF01225 Mur ligase family, catalytic domain J3K87_00070 PF02875 Mur ligase family, glutamate ligase domain J3K87_00075 PF00953 Glycosyl transferase family 4 J3K87_00075 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 J3K87_00080 PF02875 Mur ligase family, glutamate ligase domain J3K87_00080 PF08245 Mur ligase middle domain J3K87_00085 PF01098 Cell cycle protein J3K87_00090 PF04101 Glycosyltransferase family 28 C-terminal domain J3K87_00090 PF03033 Glycosyltransferase family 28 N-terminal domain J3K87_00095 PF01225 Mur ligase family, catalytic domain J3K87_00095 PF02875 Mur ligase family, glutamate ligase domain J3K87_00095 PF08245 Mur ligase middle domain J3K87_00100 PF07478 D-ala D-ala ligase C-terminus J3K87_00100 PF01820 D-ala D-ala ligase N-terminus J3K87_00105 PF03799 Cell division protein FtsQ J3K87_00105 PF08478 POTRA domain, FtsQ-type J3K87_00110 PF02491 SHS2 domain inserted in FTSA J3K87_00115 PF00091 Tubulin/FtsZ family, GTPase domain J3K87_00115 PF12327 FtsZ family, C-terminal domain J3K87_00120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase J3K87_00125 PF02463 RecF/RecN/SMC N terminal domain J3K87_00130 PF00005 ABC transporter J3K87_00130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J3K87_00135 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_00135 PF12911 N-terminal TM domain of oligopeptide transport permease C J3K87_00140 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_00145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J3K87_00150 PF00009 Elongation factor Tu GTP binding domain J3K87_00150 PF03144 Elongation factor Tu domain 2 J3K87_00150 PF16658 Class II release factor RF3, C-terminal domain J3K87_00165 PF01195 Peptidyl-tRNA hydrolase J3K87_00170 PF06071 Protein of unknown function (DUF933) J3K87_00170 PF01926 50S ribosome-binding GTPase J3K87_00185 PF05433 Glycine zipper 2TM domain J3K87_00190 PF06185 YecM protein J3K87_00195 PF03485 Arginyl tRNA synthetase N terminal domain J3K87_00195 PF05746 DALR anticodon binding domain J3K87_00195 PF00750 tRNA synthetases class I (R) J3K87_00200 PF01018 GTP1/OBG J3K87_00200 PF01926 50S ribosome-binding GTPase J3K87_00205 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) J3K87_00210 PF08032 RNA 2'-O ribose methyltransferase substrate binding J3K87_00210 PF00588 SpoU rRNA Methylase family J3K87_00215 PF13091 PLD-like domain J3K87_00220 PF08264 Anticodon-binding domain of tRNA J3K87_00220 PF00133 tRNA synthetases class I (I, L, M and V) J3K87_00220 PF06827 Zinc finger found in FPG and IleRS J3K87_00225 PF06574 FAD synthetase J3K87_00225 PF01687 Riboflavin kinase J3K87_00230 PF01467 Cytidylyltransferase-like J3K87_00230 PF13521 AAA domain J3K87_00235 PF00149 Calcineurin-like phosphoesterase J3K87_00240 PF00072 Response regulator receiver domain J3K87_00240 PF00486 Transcriptional regulatory protein, C terminal J3K87_00255 PF01168 Alanine racemase, N-terminal domain J3K87_00260 PF00679 Elongation factor G C-terminus J3K87_00260 PF00009 Elongation factor Tu GTP binding domain J3K87_00260 PF03144 Elongation factor Tu domain 2 J3K87_00265 PF00462 Glutaredoxin J3K87_00270 PF01138 3' exoribonuclease family, domain 1 J3K87_00270 PF03725 3' exoribonuclease family, domain 2 J3K87_00275 PF03755 YicC-like family, N-terminal region J3K87_00275 PF08340 Domain of unknown function (DUF1732) J3K87_00280 PF01571 Aminomethyltransferase folate-binding domain J3K87_00285 PF00037 4Fe-4S binding domain J3K87_00290 PF00196 Bacterial regulatory proteins, luxR family J3K87_00290 PF00072 Response regulator receiver domain J3K87_00295 PF01170 Putative RNA methylase family UPF0020 J3K87_00295 PF10672 S-adenosylmethionine-dependent methyltransferase J3K87_00295 PF02926 THUMP domain J3K87_00300 PF00588 SpoU rRNA Methylase family J3K87_00305 PF00923 Transaldolase/Fructose-6-phosphate aldolase J3K87_00340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J3K87_00345 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_00350 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_00350 PF12911 N-terminal TM domain of oligopeptide transport permease C J3K87_00355 PF00005 ABC transporter J3K87_00355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J3K87_00360 PF00005 ABC transporter J3K87_00360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J3K87_00365 PF06146 Phosphate-starvation-inducible E J3K87_00375 PF01042 Endoribonuclease L-PSP J3K87_00380 PF01063 Amino-transferase class IV J3K87_00385 PF00462 Glutaredoxin J3K87_00390 PF02132 RecR protein J3K87_00390 PF13662 Toprim domain J3K87_00395 PF02575 YbaB/EbfC DNA-binding family J3K87_00400 PF03544 Gram-negative bacterial TonB protein C-terminal J3K87_00405 PF02472 Biopolymer transport protein ExbD/TolR J3K87_00410 PF01618 MotA/TolQ/ExbB proton channel family J3K87_00415 PF00581 Rhodanese-like domain J3K87_00425 PF00381 PTS HPr component phosphorylation site J3K87_00425 PF00391 PEP-utilising enzyme, mobile domain J3K87_00425 PF03610 PTS system fructose IIA component J3K87_00425 PF05524 PEP-utilising enzyme, N-terminal J3K87_00430 PF02734 DAK2 domain J3K87_00435 PF02733 Dak1 domain J3K87_00440 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3K87_00445 PF02348 Cytidylyltransferase J3K87_00450 PF06078 Bacterial protein of unknown function (DUF937) J3K87_00455 PF09297 NADH pyrophosphatase zinc ribbon domain J3K87_00455 PF00293 NUDIX domain J3K87_00460 PF00849 RNA pseudouridylate synthase J3K87_00470 PF04186 FxsA cytoplasmic membrane protein J3K87_00475 PF00557 Metallopeptidase family M24 J3K87_00480 PF01206 Sulfurtransferase TusA J3K87_00485 PF06877 Regulator of ribonuclease activity B J3K87_00490 PF01926 50S ribosome-binding GTPase J3K87_00500 PF02535 ZIP Zinc transporter J3K87_00505 PF00920 Dehydratase family J3K87_00515 PF00205 Thiamine pyrophosphate enzyme, central domain J3K87_00515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J3K87_00515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J3K87_00520 PF02335 Cytochrome c552 J3K87_00530 PF13247 4Fe-4S dicluster domain J3K87_00535 PF03916 Polysulphide reductase, NrfD J3K87_00545 PF00860 Permease family J3K87_00550 PF00171 Aldehyde dehydrogenase family J3K87_00550 PF01619 Proline dehydrogenase J3K87_00550 PF14850 DNA-binding domain of Proline dehydrogenase J3K87_00550 PF18327 Proline utilization A proline dehydrogenase N-terminal domain J3K87_00555 PF00474 Sodium:solute symporter family J3K87_00560 PF01614 Bacterial transcriptional regulator J3K87_00560 PF09339 IclR helix-turn-helix domain J3K87_00565 PF01812 5-formyltetrahydrofolate cyclo-ligase family J3K87_00575 PF05164 Cell division protein ZapA J3K87_00580 PF03695 Uncharacterised protein family (UPF0149) J3K87_00585 PF01208 Uroporphyrinogen decarboxylase (URO-D) J3K87_00590 PF04222 Protein of unknown function (DUF416) J3K87_00595 PF00216 Bacterial DNA-binding protein J3K87_00600 PF00303 Thymidylate synthase J3K87_00610 PF06968 Biotin and Thiamin Synthesis associated domain J3K87_00610 PF04055 Radical SAM superfamily J3K87_00615 PF00313 'Cold-shock' DNA-binding domain J3K87_00620 PF04352 ProQ/FINO family J3K87_00625 PF11818 C-terminal domain of tail specific protease (DUF3340) J3K87_00625 PF00595 PDZ domain J3K87_00625 PF03572 Peptidase family S41 J3K87_00625 PF17804 Tail specific protease N-terminal domain J3K87_00630 PF03734 L,D-transpeptidase catalytic domain J3K87_00635 PF05951 Bacterial protein of unknown function (DUF882) J3K87_00640 PF00753 Metallo-beta-lactamase superfamily J3K87_00655 PF01230 HIT domain J3K87_00660 PF00950 ABC 3 transport family J3K87_00665 PF00950 ABC 3 transport family J3K87_00670 PF01351 Ribonuclease HII J3K87_00675 PF03193 RsgA GTPase J3K87_00680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_00680 PF03466 LysR substrate binding domain J3K87_00685 PF13419 Haloacid dehalogenase-like hydrolase J3K87_00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_00690 PF03466 LysR substrate binding domain J3K87_00700 PF17763 Glutaminase/Asparaginase C-terminal domain J3K87_00700 PF00710 Asparaginase, N-terminal J3K87_00705 PF06418 CTP synthase N-terminus J3K87_00705 PF00117 Glutamine amidotransferase class-I J3K87_00710 PF10063 Uncharacterized integral membrane protein (DUF2301) J3K87_00715 PF00694 Aconitase C-terminal domain J3K87_00720 PF00330 Aconitase family (aconitate hydratase) J3K87_00725 PF05651 Putative sugar diacid recognition J3K87_00725 PF17853 GGDEF-like domain J3K87_00725 PF13556 PucR C-terminal helix-turn-helix domain J3K87_00730 PF02447 GntP family permease J3K87_00735 PF02595 Glycerate kinase family J3K87_00740 PF00708 Acylphosphatase J3K87_00745 PF11398 Protein of unknown function (DUF2813) J3K87_00750 PF11892 Domain of unknown function (DUF3412) J3K87_00750 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases J3K87_00750 PF03641 Possible lysine decarboxylase J3K87_00755 PF01207 Dihydrouridine synthase (Dus) J3K87_00765 PF00317 Ribonucleotide reductase, all-alpha domain J3K87_00765 PF03477 ATP cone domain J3K87_00765 PF02867 Ribonucleotide reductase, barrel domain J3K87_00770 PF01521 Iron-sulphur cluster biosynthesis J3K87_00770 PF01106 NifU-like domain J3K87_00775 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) J3K87_00775 PF11973 NQRA C-terminal domain J3K87_00780 PF03116 NQR2, RnfD, RnfE family J3K87_00785 PF04205 FMN-binding domain J3K87_00790 PF02508 Rnf-Nqr subunit, membrane protein J3K87_00795 PF02508 Rnf-Nqr subunit, membrane protein J3K87_00800 PF00970 Oxidoreductase FAD-binding domain J3K87_00800 PF00111 2Fe-2S iron-sulfur cluster binding domain J3K87_00800 PF00175 Oxidoreductase NAD-binding domain J3K87_00805 PF02424 ApbE family J3K87_00810 PF04400 (Na+)-NQR maturation NqrM J3K87_00820 PF12832 MFS_1 like family J3K87_00825 PF03807 NADP oxidoreductase coenzyme F420-dependent J3K87_00825 PF14748 Pyrroline-5-carboxylate reductase dimerisation J3K87_00830 PF04381 Putative exonuclease, RdgC J3K87_00855 PF02508 Rnf-Nqr subunit, membrane protein J3K87_00860 PF04060 Putative Fe-S cluster J3K87_00865 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit J3K87_00865 PF12838 4Fe-4S dicluster domain J3K87_00865 PF13375 RnfC Barrel sandwich hybrid domain J3K87_00870 PF03458 UPF0126 domain J3K87_00875 PF03116 NQR2, RnfD, RnfE family J3K87_00880 PF04205 FMN-binding domain J3K87_00885 PF02508 Rnf-Nqr subunit, membrane protein J3K87_00890 PF03279 Bacterial lipid A biosynthesis acyltransferase J3K87_00905 PF01258 Prokaryotic dksA/traR C4-type zinc finger J3K87_00910 PF01743 Poly A polymerase head domain J3K87_00910 PF12626 Polymerase A arginine-rich C-terminus J3K87_00910 PF12627 Probable RNA and SrmB- binding site of polymerase A J3K87_00915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) J3K87_00925 PF11739 Dicarboxylate transport J3K87_00935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3K87_00940 PF00929 Exonuclease J3K87_00950 PF02153 Prephenate dehydrogenase J3K87_00950 PF01817 Chorismate mutase type II J3K87_00955 PF00793 DAHP synthetase I family J3K87_00960 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J3K87_00965 PF00224 Pyruvate kinase, barrel domain J3K87_00965 PF02887 Pyruvate kinase, alpha/beta domain J3K87_00970 PF00300 Histidine phosphatase superfamily (branch 1) J3K87_00975 PF01207 Dihydrouridine synthase (Dus) J3K87_00980 PF02954 Bacterial regulatory protein, Fis family J3K87_00985 PF00209 Sodium:neurotransmitter symporter family J3K87_00990 PF02086 D12 class N6 adenine-specific DNA methyltransferase J3K87_00995 PF01761 3-dehydroquinate synthase J3K87_01000 PF01202 Shikimate kinase J3K87_01005 PF17092 Penicillin-binding protein OB-like domain J3K87_01005 PF00912 Transglycosylase J3K87_01005 PF00905 Penicillin binding protein transpeptidase domain J3K87_01010 PF11104 Type IV pilus assembly protein PilM; J3K87_01030 PF00263 Bacterial type II and III secretion system protein J3K87_01030 PF03958 Bacterial type II/III secretion system short domain J3K87_01035 PF01029 NusB family J3K87_01040 PF00586 AIR synthase related protein, N-terminal domain J3K87_01040 PF02769 AIR synthase related protein, C-terminal domain J3K87_01045 PF04608 Phosphatidylglycerophosphatase A J3K87_01050 PF01810 LysE type translocator J3K87_01055 PF00588 SpoU rRNA Methylase family J3K87_01055 PF08032 RNA 2'-O ribose methyltransferase substrate binding J3K87_01060 PF00459 Inositol monophosphatase family J3K87_01065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase J3K87_01065 PF02779 Transketolase, pyrimidine binding domain J3K87_01065 PF02780 Transketolase, C-terminal domain J3K87_01075 PF00464 Serine hydroxymethyltransferase J3K87_01080 PF01513 ATP-NAD kinase J3K87_01085 PF18019 HD domain J3K87_01090 PF01867 CRISPR associated protein Cas1 J3K87_01100 PF09615 CRISPR-associated protein (Cas_Csy3) J3K87_01105 PF09614 CRISPR-associated protein (Cas_Csy2) J3K87_01115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J3K87_01115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J3K87_01115 PF02824 TGS domain J3K87_01115 PF03129 Anticodon binding domain J3K87_01120 PF03783 Curli production assembly/transport component CsgG J3K87_01130 PF05643 Putative bacterial lipoprotein (DUF799) J3K87_01135 PF00707 Translation initiation factor IF-3, C-terminal domain J3K87_01135 PF05198 Translation initiation factor IF-3, N-terminal domain J3K87_01140 PF01632 Ribosomal protein L35 J3K87_01145 PF00453 Ribosomal protein L20 J3K87_01165 PF01595 Cyclin M transmembrane N-terminal domain J3K87_01165 PF03471 Transporter associated domain J3K87_01165 PF00571 CBS domain J3K87_01170 PF00849 RNA pseudouridylate synthase J3K87_01175 PF00300 Histidine phosphatase superfamily (branch 1) J3K87_01180 PF03652 Holliday junction resolvase J3K87_01185 PF02622 Uncharacterized ACR, COG1678 J3K87_01190 PF04452 RNA methyltransferase J3K87_01200 PF01722 BolA-like protein J3K87_01225 PF07516 SecA Wing and Scaffold domain J3K87_01225 PF01043 SecA preprotein cross-linking domain J3K87_01225 PF07517 SecA DEAD-like domain J3K87_01225 PF02810 SEC-C motif J3K87_01235 PF00293 NUDIX domain J3K87_01240 PF01118 Semialdehyde dehydrogenase, NAD binding domain J3K87_01245 PF00696 Amino acid kinase family J3K87_01250 PF00202 Aminotransferase class-III J3K87_01255 PF17484 N-Lobe handle Tf-binding protein B J3K87_01255 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B J3K87_01255 PF17483 C-lobe handle domain of Tf-binding protein B J3K87_01265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3K87_01265 PF07498 Rho termination factor, N-terminal domain J3K87_01265 PF07497 Rho termination factor, RNA-binding domain J3K87_01270 PF00291 Pyridoxal-phosphate dependent enzyme J3K87_01275 PF08544 GHMP kinases C terminal J3K87_01275 PF00288 GHMP kinases N terminal domain J3K87_01280 PF00742 Homoserine dehydrogenase J3K87_01280 PF13840 ACT domain J3K87_01280 PF03447 Homoserine dehydrogenase, NAD binding domain J3K87_01280 PF00696 Amino acid kinase family J3K87_01280 PF01842 ACT domain J3K87_01285 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain J3K87_01285 PF02777 Iron/manganese superoxide dismutases, C-terminal domain J3K87_01290 PF00842 Alanine racemase, C-terminal domain J3K87_01290 PF01168 Alanine racemase, N-terminal domain J3K87_01295 PF13538 UvrD-like helicase C-terminal domain J3K87_01325 PF07687 Peptidase dimerisation domain J3K87_01325 PF01546 Peptidase family M20/M25/M40 J3K87_01330 PF00156 Phosphoribosyl transferase domain J3K87_01335 PF00625 Guanylate kinase J3K87_01340 PF02321 Outer membrane efflux protein J3K87_01345 PF03658 RnfH family Ubiquitin J3K87_01350 PF03364 Polyketide cyclase / dehydrase and lipid transport J3K87_01355 PF00005 ABC transporter J3K87_01355 PF03459 TOBE domain J3K87_01360 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_01370 PF01061 ABC-2 type transporter J3K87_01375 PF00005 ABC transporter J3K87_01380 PF12169 DNA polymerase III subunits gamma and tau domain III J3K87_01380 PF12170 DNA polymerase III tau subunit V interacting with alpha J3K87_01385 PF00156 Phosphoribosyl transferase domain J3K87_01400 PF00291 Pyridoxal-phosphate dependent enzyme J3K87_01405 PF04073 Aminoacyl-tRNA editing domain J3K87_01410 PF00005 ABC transporter J3K87_01415 PF01297 Zinc-uptake complex component A periplasmic J3K87_01420 PF04358 DsrC like protein J3K87_01425 PF01027 Inhibitor of apoptosis-promoting Bax1 J3K87_01430 PF01066 CDP-alcohol phosphatidyltransferase J3K87_01440 PF08459 UvrC Helix-hairpin-helix N-terminal J3K87_01440 PF02151 UvrB/uvrC motif J3K87_01440 PF01541 GIY-YIG catalytic domain J3K87_01445 PF01026 TatD related DNase J3K87_01450 PF00580 UvrD/REP helicase N-terminal domain J3K87_01450 PF13361 UvrD-like helicase C-terminal domain J3K87_01455 PF00005 ABC transporter J3K87_01455 PF08402 TOBE domain J3K87_01460 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_01465 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_01470 PF01330 RuvA N terminal domain J3K87_01470 PF07499 RuvA, C-terminal domain J3K87_01475 PF17864 RuvB AAA lid domain J3K87_01475 PF05491 RuvB C-terminal winged helix domain J3K87_01475 PF05496 Holliday junction DNA helicase RuvB P-loop domain J3K87_01485 PF03989 DNA gyrase C-terminal domain, beta-propeller J3K87_01485 PF00521 DNA gyrase/topoisomerase IV, subunit A J3K87_01490 PF12161 HsdM N-terminal domain J3K87_01490 PF02384 N-6 DNA Methylase J3K87_01510 PF01420 Type I restriction modification DNA specificity domain J3K87_01520 PF12008 Type I restriction and modification enzyme - subunit R C terminal J3K87_01520 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) J3K87_01520 PF18766 SWI2/SNF2 ATPase J3K87_01525 PF00005 ABC transporter J3K87_01525 PF16326 ABC transporter C-terminal domain J3K87_01525 PF12848 ABC transporter J3K87_01530 PF00899 ThiF family J3K87_01535 PF17274 Family of unknown function (DUF5339) J3K87_01540 PF01654 Cytochrome bd terminal oxidase subunit I J3K87_01545 PF02322 Cytochrome bd terminal oxidase subunit II J3K87_01560 PF03061 Thioesterase superfamily J3K87_01565 PF01618 MotA/TolQ/ExbB proton channel family J3K87_01570 PF02472 Biopolymer transport protein ExbD/TolR J3K87_01575 PF06519 TolA C-terminal J3K87_01575 PF06519 TolA C-terminal J3K87_01580 PF07676 WD40-like Beta Propeller Repeat J3K87_01580 PF04052 TolB amino-terminal domain J3K87_01585 PF00691 OmpA family J3K87_01595 PF00226 DnaJ domain J3K87_01595 PF05099 Tellurite resistance protein TerB J3K87_01600 PF01207 Dihydrouridine synthase (Dus) J3K87_01605 PF05128 Domain of unknown function (DUF697) J3K87_01610 PF00005 ABC transporter J3K87_01610 PF12848 ABC transporter J3K87_01620 PF03454 MoeA C-terminal region (domain IV) J3K87_01620 PF03453 MoeA N-terminal region (domain I and II) J3K87_01620 PF00994 Probable molybdopterin binding domain J3K87_01625 PF00899 ThiF family J3K87_01635 PF05958 tRNA (Uracil-5-)-methyltransferase J3K87_01635 PF01938 TRAM domain J3K87_01640 PF01966 HD domain J3K87_01640 PF13286 Phosphohydrolase-associated domain J3K87_01645 PF00271 Helicase conserved C-terminal domain J3K87_01645 PF12137 RNA polymerase recycling family C-terminal J3K87_01645 PF00176 SNF2 family N-terminal domain J3K87_01645 PF18339 RapA N-terminal Tudor like domain 1 J3K87_01645 PF18337 RapA N-terminal Tudor like domain J3K87_01650 PF00849 RNA pseudouridylate synthase J3K87_01655 PF01510 N-acetylmuramoyl-L-alanine amidase J3K87_01660 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ J3K87_01665 PF00156 Phosphoribosyl transferase domain J3K87_01670 PF01717 Cobalamin-independent synthase, Catalytic domain J3K87_01675 PF01053 Cys/Met metabolism PLP-dependent enzyme J3K87_01680 PF02600 Disulfide bond formation protein DsbB J3K87_01685 PF06450 Bacterial Na+/H+ antiporter B (NhaB) J3K87_01690 PF00392 Bacterial regulatory proteins, gntR family J3K87_01690 PF07840 FadR C-terminal domain J3K87_01695 PF02562 PhoH-like protein J3K87_01715 PF00293 NUDIX domain J3K87_01720 PF01494 FAD binding domain J3K87_01740 PF01494 FAD binding domain J3K87_01745 PF03668 P-loop ATPase protein family J3K87_01750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J3K87_01755 PF00005 ABC transporter J3K87_01755 PF12399 Branched-chain amino acid ATP-binding cassette transporter J3K87_01760 PF03968 OstA-like protein J3K87_01770 PF00311 Phosphoenolpyruvate carboxylase J3K87_01775 PF04536 TPM domain J3K87_01785 PF04011 LemA family J3K87_01790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J3K87_01795 PF00294 pfkB family carbohydrate kinase J3K87_01800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J3K87_01800 PF00381 PTS HPr component phosphorylation site J3K87_01805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J3K87_01805 PF02806 Alpha amylase, C-terminal all-beta domain J3K87_01805 PF00128 Alpha amylase, catalytic domain J3K87_01810 PF00128 Alpha amylase, catalytic domain J3K87_01810 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) J3K87_01810 PF18390 Glycogen debranching enzyme C-terminal domain J3K87_01815 PF00483 Nucleotidyl transferase J3K87_01820 PF08323 Starch synthase catalytic domain J3K87_01820 PF00534 Glycosyl transferases group 1 J3K87_01825 PF00343 Carbohydrate phosphorylase J3K87_01835 PF00334 Nucleoside diphosphate kinase J3K87_01840 PF08264 Anticodon-binding domain of tRNA J3K87_01840 PF09334 tRNA synthetases class I (M) J3K87_01840 PF01588 Putative tRNA binding domain J3K87_01845 PF13378 Enolase C-terminal domain-like J3K87_01855 PF01479 S4 domain J3K87_01855 PF00849 RNA pseudouridylate synthase J3K87_01860 PF07690 Major Facilitator Superfamily J3K87_01875 PF01261 Xylose isomerase-like TIM barrel J3K87_01880 PF00877 NlpC/P60 family J3K87_01885 PF00717 Peptidase S24-like J3K87_01890 PF01228 Glycine radical J3K87_01895 PF03167 Uracil DNA glycosylase superfamily J3K87_01900 PF04393 Protein of unknown function (DUF535) J3K87_01905 PF03797 Autotransporter beta-domain J3K87_01905 PF00082 Subtilase family J3K87_01910 PF00270 DEAD/DEAH box helicase J3K87_01910 PF11898 Domain of unknown function (DUF3418) J3K87_01910 PF04408 Helicase associated domain (HA2) J3K87_01910 PF00271 Helicase conserved C-terminal domain J3K87_01910 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold J3K87_01915 PF04284 Protein of unknown function (DUF441) J3K87_01920 PF01025 GrpE J3K87_01925 PF13416 Bacterial extracellular solute-binding protein J3K87_01930 PF01554 MatE J3K87_01935 PF12705 PD-(D/E)XK nuclease superfamily J3K87_01935 PF00580 UvrD/REP helicase N-terminal domain J3K87_01935 PF13361 UvrD-like helicase C-terminal domain J3K87_01940 PF00795 Carbon-nitrogen hydrolase J3K87_01945 PF00571 CBS domain J3K87_01945 PF03471 Transporter associated domain J3K87_01950 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) J3K87_01955 PF00230 Major intrinsic protein J3K87_01960 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J3K87_01960 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J3K87_01965 PF00004 ATPase family associated with various cellular activities (AAA) J3K87_01965 PF05362 Lon protease (S16) C-terminal proteolytic domain J3K87_01965 PF02190 ATP-dependent protease La (LON) substrate-binding domain J3K87_01970 PF07690 Major Facilitator Superfamily J3K87_01975 PF03009 Glycerophosphoryl diester phosphodiesterase family J3K87_01980 PF01266 FAD dependent oxidoreductase J3K87_01980 PF04324 BFD-like [2Fe-2S] binding domain J3K87_01985 PF00890 FAD binding domain J3K87_01990 PF02754 Cysteine-rich domain J3K87_01990 PF13183 4Fe-4S dicluster domain J3K87_01995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J3K87_01995 PF01872 RibD C-terminal domain J3K87_02000 PF00677 Lumazine binding domain J3K87_02005 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase J3K87_02005 PF00925 GTP cyclohydrolase II J3K87_02010 PF00885 6,7-dimethyl-8-ribityllumazine synthase J3K87_02015 PF01272 Transcription elongation factor, GreA/GreB, C-term J3K87_02015 PF03449 Transcription elongation factor, N-terminal J3K87_02020 PF00571 CBS domain J3K87_02020 PF01380 SIS domain J3K87_02025 PF12404 Peptidase J3K87_02025 PF00883 Cytosol aminopeptidase family, catalytic domain J3K87_02030 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) J3K87_02035 PF01758 Sodium Bile acid symporter family J3K87_02040 PF13533 Biotin-lipoyl like J3K87_02050 PF00682 HMGL-like J3K87_02050 PF08502 LeuA allosteric (dimerisation) domain J3K87_02055 PF04542 Sigma-70 region 2 J3K87_02055 PF08281 Sigma-70, region 4 J3K87_02060 PF03873 Anti sigma-E protein RseA, C-terminal domain J3K87_02060 PF03872 Anti sigma-E protein RseA, N-terminal domain J3K87_02070 PF00501 AMP-binding enzyme J3K87_02070 PF13193 AMP-binding enzyme C-terminal domain J3K87_02080 PF00398 Ribosomal RNA adenine dimethylase J3K87_02085 PF09312 SurA N-terminal domain J3K87_02085 PF00639 PPIC-type PPIASE domain J3K87_02090 PF00156 Phosphoribosyl transferase domain J3K87_02095 PF01467 Cytidylyltransferase-like J3K87_02095 PF00294 pfkB family carbohydrate kinase J3K87_02100 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal J3K87_02100 PF01926 50S ribosome-binding GTPase J3K87_02105 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain J3K87_02105 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain J3K87_02105 PF01488 Shikimate / quinate 5-dehydrogenase J3K87_02110 PF13291 ACT domain J3K87_02110 PF04607 Region found in RelA / SpoT proteins J3K87_02110 PF02824 TGS domain J3K87_02115 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain J3K87_02115 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase J3K87_02115 PF13288 DXP reductoisomerase C-terminal domain J3K87_02120 PF00132 Bacterial transferase hexapeptide (six repeats) J3K87_02120 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 J3K87_02125 PF07977 FabA-like domain J3K87_02130 PF00132 Bacterial transferase hexapeptide (six repeats) J3K87_02130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD J3K87_02140 PF01103 Surface antigen J3K87_02140 PF07244 Surface antigen variable number repeat J3K87_02145 PF02163 Peptidase family M50 J3K87_02155 PF01255 Putative undecaprenyl diphosphate synthase J3K87_02160 PF16123 Hydroxyacylglutathione hydrolase C-terminus J3K87_02160 PF00753 Metallo-beta-lactamase superfamily J3K87_02165 PF00480 ROK family J3K87_02170 PF01569 PAP2 superfamily J3K87_02175 PF01985 CRS1 / YhbY (CRM) domain J3K87_02180 PF00535 Glycosyl transferase family 2 J3K87_02185 PF00768 D-alanyl-D-alanine carboxypeptidase J3K87_02190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J3K87_02195 PF00764 Arginosuccinate synthase J3K87_02200 PF00075 RNase H J3K87_02205 PF02674 Colicin V production protein J3K87_02210 PF00156 Phosphoribosyl transferase domain J3K87_02220 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain J3K87_02220 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase J3K87_02225 PF04355 SmpA / OmlA family J3K87_02230 PF04245 37-kD nucleoid-associated bacterial protein J3K87_02235 PF01042 Endoribonuclease L-PSP J3K87_02240 PF02578 Multi-copper polyphenol oxidoreductase laccase J3K87_02250 PF00589 Phage integrase family J3K87_02280 PF04381 Putative exonuclease, RdgC J3K87_02375 PF18644 Phage integrase SAM-like domain J3K87_02375 PF00589 Phage integrase family J3K87_02405 PF07102 Protein of unknown function (DUF1364) J3K87_02430 PF00271 Helicase conserved C-terminal domain J3K87_02430 PF04851 Type III restriction enzyme, res subunit J3K87_02430 PF02151 UvrB/uvrC motif J3K87_02430 PF12344 Ultra-violet resistance protein B J3K87_02430 PF17757 UvrB interaction domain J3K87_02440 PF05106 Phage holin family (Lysis protein S) J3K87_02445 PF00182 Chitinase class I J3K87_02460 PF03592 Terminase small subunit J3K87_02580 PF07119 Protein of unknown function (DUF1375) J3K87_02585 PF00180 Isocitrate/isopropylmalate dehydrogenase J3K87_02590 PF01641 SelR domain J3K87_02595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain J3K87_02595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain J3K87_02605 PF04085 rod shape-determining protein MreC J3K87_02610 PF04093 rod shape-determining protein MreD J3K87_02615 PF00004 ATPase family associated with various cellular activities (AAA) J3K87_02615 PF16193 AAA C-terminal domain J3K87_02615 PF12002 MgsA AAA+ ATPase C terminal J3K87_02620 PF00950 ABC 3 transport family J3K87_02625 PF13230 Glutamine amidotransferases class-II J3K87_02630 PF00561 alpha/beta hydrolase fold J3K87_02635 PF02698 DUF218 domain J3K87_02645 PF02589 LUD domain J3K87_02650 PF11870 Domain of unknown function (DUF3390) J3K87_02650 PF02589 LUD domain J3K87_02650 PF13183 4Fe-4S dicluster domain J3K87_02655 PF02754 Cysteine-rich domain J3K87_02660 PF02652 L-lactate permease J3K87_02665 PF00816 H-NS histone family J3K87_02670 PF03553 Na+/H+ antiporter family J3K87_02675 PF13407 Periplasmic binding protein domain J3K87_02680 PF02629 CoA binding domain J3K87_02680 PF00549 CoA-ligase J3K87_02685 PF08442 ATP-grasp domain J3K87_02685 PF00549 CoA-ligase J3K87_02690 PF04393 Protein of unknown function (DUF535) J3K87_02695 PF02817 e3 binding domain J3K87_02695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J3K87_02695 PF00364 Biotin-requiring enzyme J3K87_02700 PF02779 Transketolase, pyrimidine binding domain J3K87_02700 PF16870 2-oxoglutarate dehydrogenase C-terminal J3K87_02700 PF00676 Dehydrogenase E1 component J3K87_02700 PF16078 2-oxoglutarate dehydrogenase N-terminus J3K87_02705 PF00005 ABC transporter J3K87_02710 PF04225 Opacity-associated protein A LysM-like domain J3K87_02710 PF01551 Peptidase family M23 J3K87_02715 PF10411 Disulfide bond isomerase protein N-terminus J3K87_02715 PF13098 Thioredoxin-like domain J3K87_02720 PF17768 RecJ OB domain J3K87_02720 PF01368 DHH family J3K87_02720 PF02272 DHHA1 domain J3K87_02725 PF01389 OmpA-like transmembrane domain J3K87_02725 PF00691 OmpA family J3K87_02735 PF07730 Histidine kinase J3K87_02735 PF00672 HAMP domain J3K87_02735 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term J3K87_02735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3K87_02745 PF01725 Ham1 family J3K87_02750 PF01906 Putative heavy-metal-binding J3K87_02755 PF01268 Formate--tetrahydrofolate ligase J3K87_02760 PF03692 Putative zinc- or iron-chelating domain J3K87_02765 PF00106 short chain dehydrogenase J3K87_02770 PF00291 Pyridoxal-phosphate dependent enzyme J3K87_02775 PF00290 Tryptophan synthase alpha chain J3K87_02780 PF12441 CopG antitoxin of type II toxin-antitoxin system J3K87_02790 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain J3K87_02790 PF00476 DNA polymerase family A J3K87_02790 PF01612 3'-5' exonuclease J3K87_02790 PF01367 5'-3' exonuclease, C-terminal SAM fold J3K87_02795 PF03548 Outer membrane lipoprotein carrier protein LolA J3K87_02800 PF01371 Trp repressor protein J3K87_02805 PF00912 Transglycosylase J3K87_02810 PF02627 Carboxymuconolactone decarboxylase family J3K87_02840 PF00881 Nitroreductase family J3K87_02845 PF18030 RimK PreATP-grasp domain J3K87_02845 PF08443 RimK-like ATP-grasp domain J3K87_02850 PF02698 DUF218 domain J3K87_02855 PF01515 Phosphate acetyl/butaryl transferase J3K87_02855 PF03949 Malic enzyme, NAD binding domain J3K87_02855 PF00390 Malic enzyme, N-terminal domain J3K87_02860 PF01386 Ribosomal L25p family J3K87_02870 PF06226 Protein of unknown function (DUF1007) J3K87_02875 PF03824 High-affinity nickel-transport protein J3K87_02880 PF01235 Sodium:alanine symporter family J3K87_02885 PF00005 ABC transporter J3K87_02890 PF00005 ABC transporter J3K87_02895 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_02900 PF00899 ThiF family J3K87_02905 PF02597 ThiS family J3K87_02910 PF05690 Thiazole biosynthesis protein ThiG J3K87_02915 PF06968 Biotin and Thiamin Synthesis associated domain J3K87_02915 PF04055 Radical SAM superfamily J3K87_02920 PF03070 TENA/THI-4/PQQC family J3K87_02930 PF08543 Phosphomethylpyrimidine kinase J3K87_02935 PF02581 Thiamine monophosphate synthase J3K87_02940 PF03144 Elongation factor Tu domain 2 J3K87_02940 PF00679 Elongation factor G C-terminus J3K87_02940 PF00009 Elongation factor Tu GTP binding domain J3K87_02940 PF06421 GTP-binding protein LepA C-terminus J3K87_02945 PF10502 Signal peptidase, peptidase S26 J3K87_02950 PF14622 Ribonuclease-III-like J3K87_02950 PF00035 Double-stranded RNA binding motif J3K87_02955 PF01926 50S ribosome-binding GTPase J3K87_02955 PF07650 KH domain J3K87_02960 PF11967 Recombination protein O N terminal J3K87_02960 PF02565 Recombination protein O C terminal J3K87_02970 PF13936 Helix-turn-helix domain J3K87_02970 PF00665 Integrase core domain J3K87_02980 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_02995 PF00318 Ribosomal protein S2 J3K87_03000 PF00889 Elongation factor TS J3K87_03005 PF00884 Sulfatase J3K87_03010 PF00696 Amino acid kinase family J3K87_03015 PF01765 Ribosome recycling factor J3K87_03020 PF00392 Bacterial regulatory proteins, gntR family J3K87_03020 PF00155 Aminotransferase class I and II J3K87_03025 PF01680 SOR/SNZ family J3K87_03030 PF01174 SNO glutamine amidotransferase family J3K87_03035 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J3K87_03040 PF00270 DEAD/DEAH box helicase J3K87_03040 PF00271 Helicase conserved C-terminal domain J3K87_03040 PF03880 DbpA RNA binding domain J3K87_03050 PF00013 KH domain J3K87_03050 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain J3K87_03050 PF01138 3' exoribonuclease family, domain 1 J3K87_03050 PF00575 S1 RNA binding domain J3K87_03050 PF03725 3' exoribonuclease family, domain 2 J3K87_03055 PF00521 DNA gyrase/topoisomerase IV, subunit A J3K87_03055 PF03989 DNA gyrase C-terminal domain, beta-propeller J3K87_03060 PF17192 MukF middle domain J3K87_03060 PF17193 MukF C-terminal domain J3K87_03060 PF03882 MukF winged-helix domain J3K87_03065 PF04288 MukE-like family J3K87_03070 PF16330 MukB hinge domain J3K87_03070 PF04310 MukB N-terminal J3K87_03075 PF07690 Major Facilitator Superfamily J3K87_03080 PF00884 Sulfatase J3K87_03080 PF11893 Domain of unknown function (DUF3413) J3K87_03085 PF07208 Protein of unknown function (DUF1414) J3K87_03090 PF00440 Bacterial regulatory proteins, tetR family J3K87_03095 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3K87_03100 PF00873 AcrB/AcrD/AcrF family J3K87_03105 PF00132 Bacterial transferase hexapeptide (six repeats) J3K87_03105 PF12804 MobA-like NTP transferase domain J3K87_03115 PF08942 Domain of unknown function (DUF1919) J3K87_03120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J3K87_03120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J3K87_03120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J3K87_03120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J3K87_03125 PF00958 GMP synthase C terminal domain J3K87_03125 PF00117 Glutamine amidotransferase class-I J3K87_03125 PF02540 NAD synthase J3K87_03135 PF00478 IMP dehydrogenase / GMP reductase domain J3K87_03135 PF00571 CBS domain J3K87_03140 PF01728 FtsJ-like methyltransferase J3K87_03145 PF01434 Peptidase family M41 J3K87_03145 PF06480 FtsH Extracellular J3K87_03145 PF17862 AAA+ lid domain J3K87_03145 PF00004 ATPase family associated with various cellular activities (AAA) J3K87_03150 PF03222 Tryptophan/tyrosine permease family J3K87_03155 PF03222 Tryptophan/tyrosine permease family J3K87_03160 PF01966 HD domain J3K87_03160 PF08335 GlnD PII-uridylyltransferase J3K87_03165 PF06295 Protein of unknown function (DUF1043) J3K87_03170 PF00572 Ribosomal protein L13 J3K87_03175 PF00380 Ribosomal protein S9/S16 J3K87_03180 PF03883 Peroxide stress protein YaaA J3K87_03190 PF16916 Dimerisation domain of Zinc Transporter J3K87_03190 PF01545 Cation efflux family J3K87_03195 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) J3K87_03200 PF00375 Sodium:dicarboxylate symporter family J3K87_03205 PF00881 Nitroreductase family J3K87_03210 PF01409 tRNA synthetases class II core domain (F) J3K87_03210 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain J3K87_03215 PF03147 Ferredoxin-fold anticodon binding domain J3K87_03215 PF03484 tRNA synthetase B5 domain J3K87_03215 PF01588 Putative tRNA binding domain J3K87_03215 PF03483 B3/4 domain J3K87_03215 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain J3K87_03220 PF00216 Bacterial DNA-binding protein J3K87_03225 PF00877 NlpC/P60 family J3K87_03240 PF00480 ROK family J3K87_03240 PF01047 MarR family J3K87_03245 PF00570 HRDC domain J3K87_03245 PF01612 3'-5' exonuclease J3K87_03250 PF01037 Lrp/AsnC ligand binding domain J3K87_03255 PF17854 FtsK alpha domain J3K87_03255 PF13491 4TM region of DNA translocase FtsK/SpoIIIE J3K87_03255 PF09397 Ftsk gamma domain J3K87_03255 PF01580 FtsK/SpoIIIE family J3K87_03260 PF04228 Putative neutral zinc metallopeptidase J3K87_03265 PF00793 DAHP synthetase I family J3K87_03270 PF00814 Glycoprotease family J3K87_03275 PF00265 Thymidine kinase J3K87_03280 PF06005 Cell division protein ZapB J3K87_03285 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded J3K87_03290 PF01784 NIF3 (NGG1p interacting factor 3) J3K87_03295 PF00005 ABC transporter J3K87_03295 PF02687 FtsX-like permease family J3K87_03295 PF12704 MacB-like periplasmic core domain J3K87_03300 PF00672 HAMP domain J3K87_03300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3K87_03300 PF00512 His Kinase A (phospho-acceptor) domain J3K87_03300 PF16527 Two-component sensor protein CpxA, periplasmic domain J3K87_03305 PF00486 Transcriptional regulatory protein, C terminal J3K87_03305 PF00072 Response regulator receiver domain J3K87_03310 PF03819 MazG nucleotide pyrophosphohydrolase domain J3K87_03315 PF17848 Acetyl-coA carboxylase zinc finger domain J3K87_03315 PF01039 Carboxyl transferase domain J3K87_03320 PF08245 Mur ligase middle domain J3K87_03330 PF17384 RimP C-terminal SH3 domain J3K87_03330 PF02576 RimP N-terminal domain J3K87_03335 PF00575 S1 RNA binding domain J3K87_03335 PF08529 NusA N-terminal domain J3K87_03335 PF13184 NusA-like KH domain J3K87_03340 PF04760 Translation initiation factor IF-2, N-terminal region J3K87_03340 PF00009 Elongation factor Tu GTP binding domain J3K87_03340 PF11987 Translation-initiation factor 2 J3K87_03345 PF02033 Ribosome-binding factor A J3K87_03350 PF01509 TruB family pseudouridylate synthase (N terminal domain) J3K87_03350 PF16198 tRNA pseudouridylate synthase B C-terminal domain J3K87_03350 PF09157 Pseudouridine synthase II TruB, C-terminal J3K87_03355 PF13406 Transglycosylase SLT domain J3K87_03360 PF07411 Domain of unknown function (DUF1508) J3K87_03365 PF07085 DRTGG domain J3K87_03365 PF01515 Phosphate acetyl/butaryl transferase J3K87_03370 PF00871 Acetokinase family J3K87_03375 PF02872 5'-nucleotidase, C-terminal domain J3K87_03375 PF00149 Calcineurin-like phosphoesterase J3K87_03385 PF13609 Gram-negative porin J3K87_03395 PF00483 Nucleotidyl transferase J3K87_03400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J3K87_03400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J3K87_03400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J3K87_03400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J3K87_03405 PF02599 Global regulator protein family J3K87_03410 PF01411 tRNA synthetases class II (A) J3K87_03410 PF02272 DHHA1 domain J3K87_03410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain J3K87_03415 PF00582 Universal stress protein family J3K87_03420 PF00027 Cyclic nucleotide-binding domain J3K87_03420 PF00325 Bacterial regulatory proteins, crp family J3K87_03425 PF04386 Stringent starvation protein B J3K87_03430 PF02798 Glutathione S-transferase, N-terminal domain J3K87_03430 PF00043 Glutathione S-transferase, C-terminal domain J3K87_03435 PF00731 AIR carboxylase J3K87_03440 PF00710 Asparaginase, N-terminal J3K87_03440 PF17763 Glutaminase/Asparaginase C-terminal domain J3K87_03445 PF02222 ATP-grasp domain J3K87_03445 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain J3K87_03450 PF00155 Aminotransferase class I and II J3K87_03455 PF05195 Aminopeptidase P, N-terminal domain J3K87_03455 PF00557 Metallopeptidase family M24 J3K87_03460 PF08774 VRR-NUC domain J3K87_03460 PF04851 Type III restriction enzyme, res subunit J3K87_03465 PF18273 Type III R-M EcoP15I C-terminal domain J3K87_03465 PF01555 DNA methylase J3K87_03480 PF13635 Domain of unknown function (DUF4143) J3K87_03480 PF13173 AAA domain J3K87_03485 PF01850 PIN domain J3K87_03500 PF04851 Type III restriction enzyme, res subunit J3K87_03500 PF17757 UvrB interaction domain J3K87_03500 PF12344 Ultra-violet resistance protein B J3K87_03500 PF02151 UvrB/uvrC motif J3K87_03500 PF00271 Helicase conserved C-terminal domain J3K87_03505 PF09375 Imelysin J3K87_03510 PF10518 TAT (twin-arginine translocation) pathway signal sequence J3K87_03510 PF04261 Dyp-type peroxidase family J3K87_03520 PF02811 PHP domain J3K87_03530 PF08411 Exonuclease C-terminal J3K87_03530 PF00929 Exonuclease J3K87_03535 PF00654 Voltage gated chloride channel J3K87_03540 PF01336 OB-fold nucleic acid binding domain J3K87_03540 PF00152 tRNA synthetases class II (D, K and N) J3K87_03545 PF04055 Radical SAM superfamily J3K87_03555 PF08207 Elongation factor P (EF-P) KOW-like domain J3K87_03555 PF01132 Elongation factor P (EF-P) OB domain J3K87_03555 PF09285 Elongation factor P, C-terminal J3K87_03560 PF00749 tRNA synthetases class I (E and Q), catalytic domain J3K87_03560 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain J3K87_03570 PF07690 Major Facilitator Superfamily J3K87_03575 PF01464 Transglycosylase SLT domain J3K87_03575 PF14718 Soluble lytic murein transglycosylase L domain J3K87_03580 PF00156 Phosphoribosyl transferase domain J3K87_03585 PF01053 Cys/Met metabolism PLP-dependent enzyme J3K87_03590 PF05173 Dihydrodipicolinate reductase, C-terminus J3K87_03590 PF01113 Dihydrodipicolinate reductase, N-terminus J3K87_03605 PF18125 RlmM ferredoxin-like domain J3K87_03605 PF01728 FtsJ-like methyltransferase J3K87_03610 PF04241 Protein of unknown function (DUF423) J3K87_03615 PF01565 FAD binding domain J3K87_03615 PF09330 D-lactate dehydrogenase, membrane binding J3K87_03620 PF00384 Molybdopterin oxidoreductase J3K87_03620 PF18364 Molybdopterin oxidoreductase N-terminal domain J3K87_03620 PF01568 Molydopterin dinucleotide binding domain J3K87_03625 PF03264 NapC/NirT cytochrome c family, N-terminal region J3K87_03630 PF06463 Molybdenum Cofactor Synthesis C J3K87_03630 PF04055 Radical SAM superfamily J3K87_03635 PF01967 MoaC family J3K87_03640 PF02597 ThiS family J3K87_03645 PF02391 MoaE protein J3K87_03650 PF02130 Uncharacterized protein family UPF0054 J3K87_03655 PF13718 GNAT acetyltransferase 2 J3K87_03655 PF17176 tRNA-binding domain J3K87_03655 PF05127 Helicase J3K87_03660 PF08272 Topoisomerase I zinc-ribbon-like J3K87_03660 PF01131 DNA topoisomerase J3K87_03660 PF01396 Topoisomerase DNA binding C4 zinc finger J3K87_03660 PF01751 Toprim domain J3K87_03665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_03665 PF03466 LysR substrate binding domain J3K87_03670 PF00696 Amino acid kinase family J3K87_03670 PF00583 Acetyltransferase (GNAT) family J3K87_03675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J3K87_03680 PF00155 Aminotransferase class I and II J3K87_03685 PF01053 Cys/Met metabolism PLP-dependent enzyme J3K87_03690 PF00266 Aminotransferase class-V J3K87_03695 PF00271 Helicase conserved C-terminal domain J3K87_03695 PF00176 SNF2 family N-terminal domain J3K87_03705 PF01555 DNA methylase J3K87_03710 PF01380 SIS domain J3K87_03710 PF01418 Helix-turn-helix domain, rpiR family J3K87_03715 PF04074 YhcH/YjgK/YiaL J3K87_03720 PF02541 Ppx/GppA phosphatase family J3K87_03725 PF04363 Protein of unknown function (DUF496) J3K87_03730 PF00696 Amino acid kinase family J3K87_03730 PF01842 ACT domain J3K87_03735 PF03477 ATP cone domain J3K87_03740 PF05166 YcgL domain J3K87_03745 PF00772 DnaB-like helicase N terminal domain J3K87_03745 PF03796 DnaB-like helicase C terminal domain J3K87_03750 PF01497 Periplasmic binding protein J3K87_03755 PF01032 FecCD transport family J3K87_03760 PF01032 FecCD transport family J3K87_03765 PF00005 ABC transporter J3K87_03770 PF01865 Protein of unknown function DUF47 J3K87_03775 PF01384 Phosphate transporter family J3K87_03780 PF08239 Bacterial SH3 domain J3K87_03790 PF01814 Hemerythrin HHE cation binding domain J3K87_03795 PF01702 Queuine tRNA-ribosyltransferase J3K87_03805 PF00313 'Cold-shock' DNA-binding domain J3K87_03810 PF00484 Carbonic anhydrase J3K87_03815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J3K87_03815 PF00205 Thiamine pyrophosphate enzyme, central domain J3K87_03815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J3K87_03820 PF10369 Small subunit of acetolactate synthase J3K87_03825 PF01523 Putative modulator of DNA gyrase J3K87_03830 PF04751 Protein of unknown function (DUF615) J3K87_03835 PF04247 Invasion gene expression up-regulator, SirB J3K87_03840 PF02441 Flavoprotein J3K87_03845 PF04474 Protein of unknown function (DUF554) J3K87_03855 PF01253 Translation initiation factor SUI1 J3K87_03860 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J3K87_03865 PF18073 Rubredoxin metal binding domain J3K87_03870 PF06305 Lipopolysaccharide assembly protein A domain J3K87_03875 PF00216 Bacterial DNA-binding protein J3K87_03880 PF00575 S1 RNA binding domain J3K87_03885 PF02224 Cytidylate kinase J3K87_03890 PF13180 PDZ domain J3K87_03900 PF03840 Preprotein translocase SecG subunit J3K87_03905 PF01131 DNA topoisomerase J3K87_03905 PF01751 Toprim domain J3K87_03910 PF00245 Alkaline phosphatase J3K87_03915 PF03411 Penicillin-insensitive murein endopeptidase J3K87_03920 PF01264 Chorismate synthase J3K87_03925 PF00924 Mechanosensitive ion channel J3K87_03925 PF12795 Mechanosensitive ion channel porin domain J3K87_03925 PF12794 Mechanosensitive ion channel inner membrane domain 1 J3K87_03930 PF12794 Mechanosensitive ion channel inner membrane domain 1 J3K87_03930 PF00924 Mechanosensitive ion channel J3K87_03930 PF12795 Mechanosensitive ion channel porin domain J3K87_03935 PF00501 AMP-binding enzyme J3K87_03940 PF03925 SeqA protein C-terminal domain J3K87_03940 PF17206 SeqA protein N-terminal domain J3K87_03945 PF00561 alpha/beta hydrolase fold J3K87_03950 PF13649 Methyltransferase domain J3K87_03970 PF00575 S1 RNA binding domain J3K87_03970 PF00773 RNB domain J3K87_03970 PF08206 Ribonuclease B OB domain J3K87_03975 PF03788 LrgA family J3K87_03980 PF04172 LrgB-like family J3K87_03985 PF00149 Calcineurin-like phosphoesterase J3K87_03995 PF03889 Alternative ribosome-rescue factor A J3K87_04000 PF13649 Methyltransferase domain J3K87_04005 PF01594 AI-2E family transporter J3K87_04010 PF01933 Uncharacterised protein family UPF0052 J3K87_04015 PF02547 Queuosine biosynthesis protein J3K87_04020 PF03772 Competence protein J3K87_04020 PF13567 Domain of unknown function (DUF4131) J3K87_04020 PF00753 Metallo-beta-lactamase superfamily J3K87_04025 PF00375 Sodium:dicarboxylate symporter family J3K87_04030 PF01219 Prokaryotic diacylglycerol kinase J3K87_04035 PF02872 5'-nucleotidase, C-terminal domain J3K87_04035 PF00149 Calcineurin-like phosphoesterase J3K87_04060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J3K87_04060 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3K87_04065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) J3K87_04065 PF00364 Biotin-requiring enzyme J3K87_04065 PF02817 e3 binding domain J3K87_04070 PF17831 Pyruvate dehydrogenase E1 component middle domain J3K87_04070 PF00456 Transketolase, thiamine diphosphate binding domain J3K87_04075 PF01180 Dihydroorotate dehydrogenase J3K87_04080 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase J3K87_04080 PF14572 Phosphoribosyl synthetase-associated domain J3K87_04085 PF00288 GHMP kinases N terminal domain J3K87_04085 PF08544 GHMP kinases C terminal J3K87_04090 PF03550 Outer membrane lipoprotein LolB J3K87_04095 PF00005 ABC transporter J3K87_04095 PF00664 ABC transporter transmembrane region J3K87_04100 PF04172 LrgB-like family J3K87_04110 PF13307 Helicase C-terminal domain J3K87_04110 PF06733 DEAD_2 J3K87_04120 PF17760 UvrA interaction domain J3K87_04120 PF17755 UvrA DNA-binding domain J3K87_04125 PF00436 Single-strand binding protein family J3K87_04155 PF03466 LysR substrate binding domain J3K87_04155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_04160 PF03060 Nitronate monooxygenase J3K87_04175 PF04237 YjbR J3K87_04180 PF00005 ABC transporter J3K87_04180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J3K87_04185 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_04185 PF12911 N-terminal TM domain of oligopeptide transport permease C J3K87_04190 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_04195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J3K87_04200 PF18024 Helix-turn-helix domain J3K87_04200 PF00158 Sigma-54 interaction domain J3K87_04205 PF13580 SIS domain J3K87_04210 PF01293 Phosphoenolpyruvate carboxykinase J3K87_04215 PF04977 Septum formation initiator J3K87_04220 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase J3K87_04225 PF02542 YgbB family J3K87_04235 PF00884 Sulfatase J3K87_04240 PF00111 2Fe-2S iron-sulfur cluster binding domain J3K87_04240 PF03473 MOSC domain J3K87_04240 PF03476 MOSC N-terminal beta barrel domain J3K87_04245 PF02609 Exonuclease VII small subunit J3K87_04250 PF00348 Polyprenyl synthetase J3K87_04260 PF00152 tRNA synthetases class II (D, K and N) J3K87_04260 PF01336 OB-fold nucleic acid binding domain J3K87_04265 PF10150 Ribonuclease E/G family J3K87_04265 PF00575 S1 RNA binding domain J3K87_04270 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding J3K87_04270 PF18381 YcaO cyclodehydratase C-terminal domain J3K87_04275 PF04851 Type III restriction enzyme, res subunit J3K87_04275 PF08774 VRR-NUC domain J3K87_04280 PF18273 Type III R-M EcoP15I C-terminal domain J3K87_04280 PF01555 DNA methylase J3K87_04285 PF08003 Protein of unknown function (DUF1698) J3K87_04295 PF06725 3D domain J3K87_04295 PF03562 MltA specific insert domain J3K87_04305 PF02601 Exonuclease VII, large subunit J3K87_04305 PF13742 OB-fold nucleic acid binding domain J3K87_04350 PF00665 Integrase core domain J3K87_04350 PF13936 Helix-turn-helix domain J3K87_04390 PF00239 Resolvase, N terminal domain J3K87_04390 PF02796 Helix-turn-helix domain of resolvase J3K87_04415 PF05593 RHS Repeat J3K87_04415 PF05488 PAAR motif J3K87_04420 PF05593 RHS Repeat J3K87_04420 PF05488 PAAR motif J3K87_04430 PF03466 LysR substrate binding domain J3K87_04430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_04435 PF03616 Sodium/glutamate symporter J3K87_04455 PF02909 Tetracyclin repressor-like, C-terminal domain J3K87_04455 PF00440 Bacterial regulatory proteins, tetR family J3K87_04460 PF07690 Major Facilitator Superfamily J3K87_04470 PF00809 Pterin binding enzyme J3K87_04475 PF01636 Phosphotransferase enzyme family J3K87_04480 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase J3K87_04485 PF01636 Phosphotransferase enzyme family J3K87_04530 PF00576 HIUase/Transthyretin family J3K87_04535 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J3K87_04535 PF00356 Bacterial regulatory proteins, lacI family J3K87_04540 PF09335 SNARE associated Golgi protein J3K87_04545 PF00986 DNA gyrase B subunit, carboxyl terminus J3K87_04545 PF01751 Toprim domain J3K87_04545 PF00204 DNA gyrase B J3K87_04545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3K87_04545 PF18053 DNA gyrase B subunit insert domain J3K87_04550 PF01040 UbiA prenyltransferase family J3K87_04555 PF00455 DeoR C terminal sensor domain J3K87_04555 PF08220 DeoR-like helix-turn-helix domain J3K87_04560 PF00206 Lyase J3K87_04560 PF08328 Adenylosuccinate lyase C-terminal J3K87_04565 PF04356 Protein of unknown function (DUF489) J3K87_04570 PF00664 ABC transporter transmembrane region J3K87_04570 PF00005 ABC transporter J3K87_04575 PF00664 ABC transporter transmembrane region J3K87_04575 PF00005 ABC transporter J3K87_04580 PF04357 TamB, inner membrane protein subunit of TAM complex J3K87_04585 PF01103 Surface antigen J3K87_04585 PF17243 POTRA domain TamA domain 1 J3K87_04590 PF04748 Divergent polysaccharide deacetylase J3K87_04595 PF01551 Peptidase family M23 J3K87_04600 PF00300 Histidine phosphatase superfamily (branch 1) J3K87_04605 PF01810 LysE type translocator J3K87_04610 PF00485 Phosphoribulokinase / Uridine kinase family J3K87_04615 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) J3K87_04620 PF00440 Bacterial regulatory proteins, tetR family J3K87_04620 PF14278 Transcriptional regulator C-terminal region J3K87_04625 PF13533 Biotin-lipoyl like J3K87_04630 PF00005 ABC transporter J3K87_04640 PF02321 Outer membrane efflux protein J3K87_04645 PF02233 NAD(P) transhydrogenase beta subunit J3K87_04650 PF05222 Alanine dehydrogenase/PNT, N-terminal domain J3K87_04650 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch J3K87_04650 PF01262 Alanine dehydrogenase/PNT, C-terminal domain J3K87_04655 PF00588 SpoU rRNA Methylase family J3K87_04670 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term J3K87_04670 PF14489 QueF-like protein J3K87_04680 PF00578 AhpC/TSA family J3K87_04690 PF04055 Radical SAM superfamily J3K87_04690 PF06969 HemN C-terminal domain J3K87_04695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J3K87_04700 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_04705 PF00005 ABC transporter J3K87_04705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J3K87_04710 PF00005 ABC transporter J3K87_04710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region J3K87_04715 PF00890 FAD binding domain J3K87_04720 PF01717 Cobalamin-independent synthase, Catalytic domain J3K87_04725 PF02219 Methylenetetrahydrofolate reductase J3K87_04730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J3K87_04735 PF03222 Tryptophan/tyrosine permease family J3K87_04740 PF03315 Serine dehydratase beta chain J3K87_04740 PF03313 Serine dehydratase alpha chain J3K87_04745 PF01266 FAD dependent oxidoreductase J3K87_04745 PF05430 S-adenosyl-L-methionine-dependent methyltransferase J3K87_04750 PF00218 Indole-3-glycerol phosphate synthase J3K87_04750 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase J3K87_04755 PF12728 Helix-turn-helix domain J3K87_04755 PF02661 Fic/DOC family J3K87_04760 PF04287 tRNA pseudouridine synthase C J3K87_04765 PF00849 RNA pseudouridylate synthase J3K87_04770 PF03701 Uncharacterised protein family (UPF0181) J3K87_04780 PF01928 CYTH domain J3K87_04785 PF04317 YcjX-like family, DUF463 J3K87_04790 PF01668 SmpB protein J3K87_04795 PF02403 Seryl-tRNA synthetase N-terminal domain J3K87_04795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J3K87_04800 PF01546 Peptidase family M20/M25/M40 J3K87_04800 PF07687 Peptidase dimerisation domain J3K87_04805 PF03606 C4-dicarboxylate anaerobic carrier J3K87_04810 PF03575 Peptidase family S51 J3K87_04815 PF08264 Anticodon-binding domain of tRNA J3K87_04815 PF00133 tRNA synthetases class I (I, L, M and V) J3K87_04815 PF13603 Leucyl-tRNA synthetase, Domain 2 J3K87_04820 PF04390 Lipopolysaccharide-assembly J3K87_04825 PF14840 Processivity clamp loader gamma complex DNA pol III C-term J3K87_04825 PF06144 DNA polymerase III, delta subunit J3K87_04830 PF03884 DNA gyrase inhibitor YacG J3K87_04835 PF01121 Dephospho-CoA kinase J3K87_04845 PF00482 Type II secretion system (T2SS), protein F J3K87_04850 PF00437 Type II/IV secretion system protein J3K87_04850 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain J3K87_04855 PF07963 Prokaryotic N-terminal methylation motif J3K87_04860 PF18073 Rubredoxin metal binding domain J3K87_04870 PF00186 Dihydrofolate reductase J3K87_04875 PF01472 PUA domain J3K87_04875 PF00696 Amino acid kinase family J3K87_04880 PF01925 Sulfite exporter TauE/SafE J3K87_04885 PF10576 Iron-sulfur binding domain of endonuclease III J3K87_04885 PF00730 HhH-GPD superfamily base excision DNA repair protein J3K87_04885 PF00633 Helix-hairpin-helix motif J3K87_04890 PF02803 Thiolase, C-terminal domain J3K87_04890 PF00108 Thiolase, N-terminal domain J3K87_04895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain J3K87_04895 PF00378 Enoyl-CoA hydratase/isomerase J3K87_04895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain J3K87_04910 PF02634 FdhD/NarQ family J3K87_04915 PF01568 Molydopterin dinucleotide binding domain J3K87_04915 PF00384 Molybdopterin oxidoreductase J3K87_04915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J3K87_04920 PF01568 Molydopterin dinucleotide binding domain J3K87_04920 PF00384 Molybdopterin oxidoreductase J3K87_04920 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J3K87_04925 PF09163 Formate dehydrogenase N, transmembrane J3K87_04925 PF13247 4Fe-4S dicluster domain J3K87_04930 PF01292 Prokaryotic cytochrome b561 J3K87_04935 PF04216 Protein involved in formate dehydrogenase formation J3K87_04950 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain J3K87_04950 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain J3K87_04960 PF00701 Dihydrodipicolinate synthetase family J3K87_04965 PF03279 Bacterial lipid A biosynthesis acyltransferase J3K87_04970 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein J3K87_04975 PF01416 tRNA pseudouridine synthase J3K87_04980 PF01227 GTP cyclohydrolase I J3K87_04995 PF12464 Maltose acetyltransferase J3K87_04995 PF14602 Hexapeptide repeat of succinyl-transferase J3K87_05005 PF03466 LysR substrate binding domain J3K87_05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_05010 PF03180 NLPA lipoprotein J3K87_05015 PF03180 NLPA lipoprotein J3K87_05020 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_05025 PF09383 NIL domain J3K87_05025 PF00005 ABC transporter J3K87_05030 PF09190 DALR domain J3K87_05030 PF01406 tRNA synthetases class I (C) catalytic domain J3K87_05035 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J3K87_05040 PF01966 HD domain J3K87_05040 PF12627 Probable RNA and SrmB- binding site of polymerase A J3K87_05040 PF01743 Poly A polymerase head domain J3K87_05050 PF07715 TonB-dependent Receptor Plug Domain J3K87_05050 PF00593 TonB dependent receptor J3K87_05070 PF04384 Iron-sulphur cluster assembly J3K87_05075 PF00111 2Fe-2S iron-sulfur cluster binding domain J3K87_05080 PF00012 Hsp70 protein J3K87_05085 PF10946 Protein of unknown function DUF2625 J3K87_05095 PF07743 HSCB C-terminal oligomerisation domain J3K87_05100 PF01521 Iron-sulphur cluster biosynthesis J3K87_05105 PF01592 NifU-like N terminal domain J3K87_05110 PF00266 Aminotransferase class-V J3K87_05115 PF02082 Transcriptional regulator J3K87_05120 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) J3K87_05125 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain J3K87_05125 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain J3K87_05130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3K87_05130 PF18415 Histidine kinase receptor ArcB trans-membrane domain J3K87_05130 PF01627 Hpt domain J3K87_05130 PF00512 His Kinase A (phospho-acceptor) domain J3K87_05130 PF00989 PAS fold J3K87_05130 PF00072 Response regulator receiver domain J3K87_05140 PF01713 Smr domain J3K87_05150 PF08241 Methyltransferase domain J3K87_05155 PF04301 Protein of unknown function (DUF452) J3K87_05160 PF00155 Aminotransferase class I and II J3K87_05165 PF00202 Aminotransferase class-III J3K87_05170 PF05175 Methyltransferase small domain J3K87_05175 PF01272 Transcription elongation factor, GreA/GreB, C-term J3K87_05175 PF03449 Transcription elongation factor, N-terminal J3K87_05180 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family J3K87_05210 PF06114 IrrE N-terminal-like domain J3K87_05215 PF01381 Helix-turn-helix J3K87_05235 PF00005 ABC transporter J3K87_05235 PF03412 Peptidase C39 family J3K87_05235 PF00664 ABC transporter transmembrane region J3K87_05240 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J3K87_05240 PF02382 N-terminal domain in RTX protein J3K87_05240 PF08339 RTX C-terminal domain J3K87_05245 PF02794 RTX toxin acyltransferase family J3K87_05250 PF05127 Helicase J3K87_05250 PF17176 tRNA-binding domain J3K87_05250 PF13718 GNAT acetyltransferase 2 J3K87_05255 PF02130 Uncharacterized protein family UPF0054 J3K87_05260 PF01808 AICARFT/IMPCHase bienzyme J3K87_05260 PF02142 MGS-like domain J3K87_05285 PF04829 Pre-toxin domain with VENN motif J3K87_05285 PF05860 haemagglutination activity domain J3K87_05285 PF13332 Hemagglutinin repeat J3K87_05285 PF13018 Extended Signal Peptide of Type V secretion system J3K87_05290 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB J3K87_05290 PF17287 POTRA domain J3K87_05290 PF08479 POTRA domain, ShlB-type J3K87_05295 PF03968 OstA-like protein J3K87_05295 PF04453 LPS transport system D J3K87_05300 PF04055 Radical SAM superfamily J3K87_05300 PF06969 HemN C-terminal domain J3K87_05310 PF04220 Der GTPase activator (YihI) J3K87_05315 PF02080 TrkA-C domain J3K87_05315 PF06826 Predicted Permease Membrane Region J3K87_05320 PF03616 Sodium/glutamate symporter J3K87_05325 PF06062 Uncharacterised protein family (UPF0231) J3K87_05330 PF03710 Glutamate-ammonia ligase adenylyltransferase J3K87_05330 PF08335 GlnD PII-uridylyltransferase J3K87_05335 PF03795 YCII-related domain J3K87_05340 PF03061 Thioesterase superfamily J3K87_05345 PF04279 Intracellular septation protein A J3K87_05355 PF04217 Protein of unknown function, DUF412 J3K87_05360 PF01171 PP-loop family J3K87_05365 PF13726 Na+-H+ antiporter family J3K87_05365 PF03553 Na+/H+ antiporter family J3K87_05370 PF03372 Endonuclease/Exonuclease/phosphatase family J3K87_05375 PF03466 LysR substrate binding domain J3K87_05375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_05395 PF01197 Ribosomal protein L31 J3K87_05400 PF02780 Transketolase, C-terminal domain J3K87_05400 PF00456 Transketolase, thiamine diphosphate binding domain J3K87_05400 PF02779 Transketolase, pyrimidine binding domain J3K87_05405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3K87_05405 PF00183 Hsp90 protein J3K87_05410 PF00199 Catalase J3K87_05410 PF06628 Catalase-related immune-responsive J3K87_05420 PF00149 Calcineurin-like phosphoesterase J3K87_05425 PF00317 Ribonucleotide reductase, all-alpha domain J3K87_05425 PF03477 ATP cone domain J3K87_05425 PF02867 Ribonucleotide reductase, barrel domain J3K87_05430 PF00268 Ribonucleotide reductase, small chain J3K87_05435 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain J3K87_05435 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain J3K87_05440 PF08544 GHMP kinases C terminal J3K87_05440 PF00288 GHMP kinases N terminal domain J3K87_05440 PF10509 Galactokinase galactose-binding signature J3K87_05445 PF01263 Aldose 1-epimerase J3K87_05450 PF02837 Glycosyl hydrolases family 2, sugar binding domain J3K87_05450 PF02836 Glycosyl hydrolases family 2, TIM barrel domain J3K87_05450 PF00703 Glycosyl hydrolases family 2 J3K87_05450 PF16353 Domain of unknown function(DUF4981) J3K87_05450 PF02929 Beta galactosidase small chain J3K87_05455 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J3K87_05455 PF06594 Haemolysin-type calcium binding protein related domain J3K87_05465 PF10609 NUBPL iron-transfer P-loop NTPase J3K87_05475 PF01914 MarC family integral membrane protein J3K87_05480 PF13145 PPIC-type PPIASE domain J3K87_05485 PF00999 Sodium/hydrogen exchanger family J3K87_05490 PF00312 Ribosomal protein S15 J3K87_05495 PF05661 Protein of unknown function (DUF808) J3K87_05500 PF07219 HemY protein N-terminus J3K87_05505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase J3K87_05510 PF02602 Uroporphyrinogen-III synthase HemD J3K87_05515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain J3K87_05515 PF03900 Porphobilinogen deaminase, C-terminal domain J3K87_05520 PF00171 Aldehyde dehydrogenase family J3K87_05520 PF00465 Iron-containing alcohol dehydrogenase J3K87_05525 PF00118 TCP-1/cpn60 chaperonin family J3K87_05530 PF00166 Chaperonin 10 Kd subunit J3K87_05535 PF01048 Phosphorylase superfamily J3K87_05540 PF01791 DeoC/LacD family aldolase J3K87_05545 PF07670 Nucleoside recognition J3K87_05545 PF07662 Na+ dependent nucleoside transporter C-terminus J3K87_05545 PF01773 Na+ dependent nucleoside transporter N-terminus J3K87_05555 PF01081 KDPG and KHG aldolase J3K87_05560 PF00294 pfkB family carbohydrate kinase J3K87_05565 PF02614 Glucuronate isomerase J3K87_05570 PF01055 Glycosyl hydrolases family 31 J3K87_05570 PF13802 Galactose mutarotase-like J3K87_05570 PF17137 Domain of unknown function (DUF5110) J3K87_05570 PF16338 Domain of unknown function (DUF4968) J3K87_05575 PF00392 Bacterial regulatory proteins, gntR family J3K87_05575 PF07729 FCD domain J3K87_05585 PF01625 Peptide methionine sulfoxide reductase J3K87_05585 PF01641 SelR domain J3K87_05590 PF00535 Glycosyl transferase family 2 J3K87_05595 PF00535 Glycosyl transferase family 2 J3K87_05605 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) J3K87_05615 PF04230 Polysaccharide pyruvyl transferase J3K87_05620 PF02698 DUF218 domain J3K87_05625 PF17764 3′ DNA-binding domain (3′BD) J3K87_05625 PF00271 Helicase conserved C-terminal domain J3K87_05625 PF00270 DEAD/DEAH box helicase J3K87_05625 PF18074 Primosomal protein N C-terminal domain J3K87_05625 PF18319 PriA DNA helicase Cys-rich region (CRR) domain J3K87_05630 PF01817 Chorismate mutase type II J3K87_05630 PF00800 Prephenate dehydratase J3K87_05635 PF01432 Peptidase family M3 J3K87_05640 PF04055 Radical SAM superfamily J3K87_05645 PF02901 Pyruvate formate lyase-like J3K87_05645 PF01228 Glycine radical J3K87_05650 PF01226 Formate/nitrite transporter J3K87_05660 PF01435 Peptidase family M48 J3K87_05665 PF00817 impB/mucB/samB family J3K87_05665 PF11799 impB/mucB/samB family C-terminal domain J3K87_05665 PF11798 IMS family HHH motif J3K87_05670 PF03956 Lysine exporter LysO J3K87_05675 PF00425 chorismate binding enzyme J3K87_05680 PF00155 Aminotransferase class I and II J3K87_05685 PF00892 EamA-like transporter family J3K87_05690 PF00892 EamA-like transporter family J3K87_05695 PF01810 LysE type translocator J3K87_05700 PF07715 TonB-dependent Receptor Plug Domain J3K87_05700 PF04886 PT repeat J3K87_05700 PF00593 TonB dependent receptor J3K87_05705 PF01243 Pyridoxamine 5'-phosphate oxidase J3K87_05715 PF03918 Cytochrome C biogenesis protein J3K87_05720 PF08534 Redoxin J3K87_05725 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J3K87_05725 PF01578 Cytochrome C assembly protein J3K87_05730 PF02254 TrkA-N domain J3K87_05730 PF00999 Sodium/hydrogen exchanger family J3K87_05735 PF01295 Adenylate cyclase, class-I J3K87_05735 PF12633 Adenylate cyclase NT domain J3K87_05740 PF02801 Beta-ketoacyl synthase, C-terminal domain J3K87_05740 PF00109 Beta-ketoacyl synthase, N-terminal domain J3K87_05750 PF04076 Bacterial OB fold (BOF) protein J3K87_05765 PF00486 Transcriptional regulatory protein, C terminal J3K87_05765 PF00072 Response regulator receiver domain J3K87_05770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3K87_05770 PF08521 Two-component sensor kinase N-terminal J3K87_05770 PF00512 His Kinase A (phospho-acceptor) domain J3K87_05775 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) J3K87_05780 PF02699 Preprotein translocase subunit J3K87_05785 PF02355 Protein export membrane protein J3K87_05785 PF13721 SecD export protein N-terminal TM region J3K87_05785 PF07549 SecD/SecF GG Motif J3K87_05790 PF02355 Protein export membrane protein J3K87_05790 PF07549 SecD/SecF GG Motif J3K87_05795 PF00210 Ferritin-like domain J3K87_05800 PF00210 Ferritin-like domain J3K87_05805 PF00860 Permease family J3K87_05810 PF02545 Maf-like protein J3K87_05820 PF02568 Thiamine biosynthesis protein (ThiI) J3K87_05820 PF02926 THUMP domain J3K87_05825 PF00709 Adenylosuccinate synthetase J3K87_05830 PF01145 SPFH domain / Band 7 family J3K87_05835 PF01145 SPFH domain / Band 7 family J3K87_05840 PF00085 Thioredoxin J3K87_05845 PF00860 Permease family J3K87_05850 PF02773 S-adenosylmethionine synthetase, C-terminal domain J3K87_05850 PF02772 S-adenosylmethionine synthetase, central domain J3K87_05850 PF00438 S-adenosylmethionine synthetase, N-terminal domain J3K87_05860 PF13520 Amino acid permease J3K87_05865 PF13520 Amino acid permease J3K87_05875 PF07687 Peptidase dimerisation domain J3K87_05875 PF01546 Peptidase family M20/M25/M40 J3K87_05880 PF03922 OmpW family J3K87_05885 PF00004 ATPase family associated with various cellular activities (AAA) J3K87_05885 PF17871 AAA lid domain J3K87_05885 PF02861 Clp amino terminal domain, pathogenicity island component J3K87_05885 PF10431 C-terminal, D2-small domain, of ClpB protein J3K87_05885 PF07724 AAA domain (Cdc48 subfamily) J3K87_05890 PF01758 Sodium Bile acid symporter family J3K87_05895 PF03960 ArsC family J3K87_05905 PF00206 Lyase J3K87_05905 PF10415 Fumarase C C-terminus J3K87_05915 PF02769 AIR synthase related protein, C-terminal domain J3K87_05915 PF00586 AIR synthase related protein, N-terminal domain J3K87_05920 PF04650 YSIRK type signal peptide J3K87_05920 PF00746 LPXTG cell wall anchor motif J3K87_05920 PF00728 Glycosyl hydrolase family 20, catalytic domain J3K87_05920 PF07501 G5 domain J3K87_05925 PF06508 Queuosine biosynthesis protein QueC J3K87_05930 PF01242 6-pyruvoyl tetrahydropterin synthase J3K87_05935 PF04055 Radical SAM superfamily J3K87_05950 PF02789 Cytosol aminopeptidase family, N-terminal domain J3K87_05950 PF00883 Cytosol aminopeptidase family, catalytic domain J3K87_05960 PF03739 Lipopolysaccharide export system permease LptF/LptG J3K87_05965 PF03739 Lipopolysaccharide export system permease LptF/LptG J3K87_05970 PF01336 OB-fold nucleic acid binding domain J3K87_05970 PF02811 PHP domain J3K87_05970 PF14579 Helix-hairpin-helix motif J3K87_05970 PF17657 Bacterial DNA polymerase III alpha subunit finger domain J3K87_05970 PF07733 Bacterial DNA polymerase III alpha NTPase domain J3K87_05975 PF02222 ATP-grasp domain J3K87_05975 PF01370 NAD dependent epimerase/dehydratase family J3K87_05980 PF01553 Acyltransferase J3K87_05985 PF01726 LexA DNA binding domain J3K87_05985 PF00717 Peptidase S24-like J3K87_05990 PF02976 DNA mismatch repair enzyme MutH J3K87_05995 PF03741 Integral membrane protein TerC family J3K87_06000 PF00933 Glycosyl hydrolase family 3 N terminal domain J3K87_06005 PF05958 tRNA (Uracil-5-)-methyltransferase J3K87_06010 PF00113 Enolase, C-terminal TIM barrel domain J3K87_06010 PF03952 Enolase, N-terminal domain J3K87_06015 PF00293 NUDIX domain J3K87_06020 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) J3K87_06025 PF00271 Helicase conserved C-terminal domain J3K87_06025 PF00570 HRDC domain J3K87_06025 PF16124 RecQ zinc-binding J3K87_06025 PF09382 RQC domain J3K87_06025 PF00270 DEAD/DEAH box helicase J3K87_06030 PF01491 Frataxin-like domain J3K87_06040 PF00814 Glycoprotease family J3K87_06045 PF13525 Outer membrane lipoprotein J3K87_06050 PF01479 S4 domain J3K87_06050 PF00849 RNA pseudouridylate synthase J3K87_06055 PF14256 YwiC-like protein J3K87_06060 PF00365 Phosphofructokinase J3K87_06065 PF00266 Aminotransferase class-V J3K87_06070 PF00565 Staphylococcal nuclease homologue J3K87_06075 PF01235 Sodium:alanine symporter family J3K87_06080 PF01594 AI-2E family transporter J3K87_06090 PF16325 Peptidase family U32 C-terminal domain J3K87_06090 PF01136 Peptidase family U32 J3K87_06095 PF04932 O-Antigen ligase J3K87_06100 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) J3K87_06100 PF00534 Glycosyl transferases group 1 J3K87_06105 PF01467 Cytidylyltransferase-like J3K87_06110 PF00929 Exonuclease J3K87_06115 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE J3K87_06120 PF01476 LysM domain J3K87_06120 PF01520 N-acetylmuramoyl-L-alanine amidase J3K87_06125 PF00342 Phosphoglucose isomerase J3K87_06130 PF04380 Membrane fusogenic activity J3K87_06155 PF08501 Shikimate dehydrogenase substrate binding domain J3K87_06155 PF01488 Shikimate / quinate 5-dehydrogenase J3K87_06155 PF18317 Shikimate 5'-dehydrogenase C-terminal domain J3K87_06160 PF01300 Telomere recombination J3K87_06165 PF01396 Topoisomerase DNA binding C4 zinc finger J3K87_06170 PF04266 ASCH domain J3K87_06175 PF02631 RecX family J3K87_06180 PF00154 recA bacterial DNA recombination protein J3K87_06185 PF01063 Amino-transferase class IV J3K87_06190 PF00425 chorismate binding enzyme J3K87_06195 PF02646 RmuC family J3K87_06200 PF00117 Glutamine amidotransferase class-I J3K87_06205 PF03625 Domain of unknown function DUF302 J3K87_06205 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J3K87_06210 PF01336 OB-fold nucleic acid binding domain J3K87_06210 PF00152 tRNA synthetases class II (D, K and N) J3K87_06210 PF02938 GAD domain J3K87_06215 PF00293 NUDIX domain J3K87_06220 PF01709 Transcriptional regulator J3K87_06230 PF02075 Crossover junction endodeoxyribonuclease RuvC J3K87_06235 PF05193 Peptidase M16 inactive domain J3K87_06235 PF00675 Insulinase (Peptidase family M16) J3K87_06240 PF01717 Cobalamin-independent synthase, Catalytic domain J3K87_06240 PF08267 Cobalamin-independent synthase, N-terminal domain J3K87_06245 PF00939 Sodium:sulfate symporter transmembrane region J3K87_06250 PF03466 LysR substrate binding domain J3K87_06250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_06255 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B J3K87_06260 PF00849 RNA pseudouridylate synthase J3K87_06260 PF01479 S4 domain J3K87_06265 PF01300 Telomere recombination J3K87_06270 PF04261 Dyp-type peroxidase family J3K87_06275 PF00425 chorismate binding enzyme J3K87_06275 PF04715 Anthranilate synthase component I, N terminal region J3K87_06280 PF00117 Glutamine amidotransferase class-I J3K87_06285 PF00591 Glycosyl transferase family, a/b domain J3K87_06285 PF02885 Glycosyl transferase family, helical bundle domain J3K87_06290 PF08241 Methyltransferase domain J3K87_06295 PF16036 Chalcone isomerase-like J3K87_06300 PF04325 Protein of unknown function (DUF465) J3K87_06305 PF03948 Ribosomal protein L9, C-terminal domain J3K87_06305 PF01281 Ribosomal protein L9, N-terminal domain J3K87_06310 PF01084 Ribosomal protein S18 J3K87_06315 PF00436 Single-strand binding protein family J3K87_06320 PF01250 Ribosomal protein S6 J3K87_06325 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain J3K87_06325 PF02844 Phosphoribosylglycinamide synthetase, N domain J3K87_06325 PF02843 Phosphoribosylglycinamide synthetase, C domain J3K87_06330 PF04973 Nicotinamide mononucleotide transporter J3K87_06335 PF09976 Tetratricopeptide repeat-like domain J3K87_06340 PF03129 Anticodon binding domain J3K87_06340 PF13393 Histidyl-tRNA synthetase J3K87_06345 PF04551 GcpE protein J3K87_06350 PF13464 Domain of unknown function (DUF4115) J3K87_06355 PF01740 STAS domain J3K87_06355 PF00916 Sulfate permease family J3K87_06360 PF14698 Argininosuccinate lyase C-terminal J3K87_06360 PF00206 Lyase J3K87_06365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold J3K87_06365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain J3K87_06370 PF02254 TrkA-N domain J3K87_06370 PF00999 Sodium/hydrogen exchanger family J3K87_06380 PF03466 LysR substrate binding domain J3K87_06380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_06395 PF12833 Helix-turn-helix domain J3K87_06395 PF06719 AraC-type transcriptional regulator N-terminus J3K87_06400 PF03466 LysR substrate binding domain J3K87_06400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_06405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family J3K87_06410 PF00296 Luciferase-like monooxygenase J3K87_06415 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J3K87_06415 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase J3K87_06420 PF00881 Nitroreductase family J3K87_06425 PF01914 MarC family integral membrane protein J3K87_06435 PF00756 Putative esterase J3K87_06440 PF02798 Glutathione S-transferase, N-terminal domain J3K87_06455 PF00107 Zinc-binding dehydrogenase J3K87_06455 PF08240 Alcohol dehydrogenase GroES-like domain J3K87_06460 PF02028 BCCT, betaine/carnitine/choline family transporter J3K87_06475 PF03595 Voltage-dependent anion channel J3K87_06480 PF13419 Haloacid dehalogenase-like hydrolase J3K87_06495 PF00005 ABC transporter J3K87_06495 PF00664 ABC transporter transmembrane region J3K87_06500 PF02664 S-Ribosylhomocysteinase (LuxS) J3K87_06505 PF02470 MlaD protein J3K87_06510 PF01475 Ferric uptake regulator family J3K87_06515 PF00258 Flavodoxin J3K87_06520 PF01402 Ribbon-helix-helix protein, copG family J3K87_06525 PF04073 Aminoacyl-tRNA editing domain J3K87_06535 PF00860 Permease family J3K87_06540 PF02635 DsrE/DsrF-like family J3K87_06550 PF01176 Translation initiation factor 1A / IF-1 J3K87_06555 PF10144 Bacterial virulence factor haemolysin J3K87_06560 PF18429 Domain of unknown function (DUF5609) J3K87_06565 PF04461 Protein of unknown function (DUF520) J3K87_06575 PF00343 Carbohydrate phosphorylase J3K87_06580 PF00196 Bacterial regulatory proteins, luxR family J3K87_06580 PF17874 MalT-like TPR region J3K87_06585 PF07148 Maltose operon periplasmic protein precursor (MalM) J3K87_06590 PF02264 LamB porin J3K87_06595 PF00005 ABC transporter J3K87_06595 PF17912 MalK OB fold domain J3K87_06600 PF01547 Bacterial extracellular solute-binding protein J3K87_06605 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_06605 PF14785 Maltose transport system permease protein MalF P2 domain J3K87_06610 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_06615 PF02446 4-alpha-glucanotransferase J3K87_06620 PF02554 Carbon starvation protein CstA J3K87_06625 PF01026 TatD related DNase J3K87_06630 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3K87_06630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain J3K87_06635 PF03350 Uncharacterized protein family, UPF0114 J3K87_06640 PF00881 Nitroreductase family J3K87_06655 PF00005 ABC transporter J3K87_06660 PF01116 Fructose-bisphosphate aldolase class-II J3K87_06665 PF00162 Phosphoglycerate kinase J3K87_06670 PF00939 Sodium:sulfate symporter transmembrane region J3K87_06675 PF00939 Sodium:sulfate symporter transmembrane region J3K87_06680 PF00939 Sodium:sulfate symporter transmembrane region J3K87_06685 PF00204 DNA gyrase B J3K87_06685 PF00986 DNA gyrase B subunit, carboxyl terminus J3K87_06685 PF01751 Toprim domain J3K87_06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3K87_06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase J3K87_06690 PF00512 His Kinase A (phospho-acceptor) domain J3K87_06695 PF00486 Transcriptional regulatory protein, C terminal J3K87_06695 PF00072 Response regulator receiver domain J3K87_06700 PF00005 ABC transporter J3K87_06705 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_06710 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_06715 PF12849 PBP superfamily domain J3K87_06720 PF09278 MerR, DNA binding J3K87_06720 PF00376 MerR family regulatory protein J3K87_06730 PF00403 Heavy-metal-associated domain J3K87_06735 PF00403 Heavy-metal-associated domain J3K87_06740 PF00106 short chain dehydrogenase J3K87_06745 PF00881 Nitroreductase family J3K87_06750 PF01343 Peptidase family S49 J3K87_06755 PF00445 Ribonuclease T2 family J3K87_06760 PF17283 SprT-like zinc ribbon domain J3K87_06760 PF10263 SprT-like family J3K87_06765 PF07992 Pyridine nucleotide-disulphide oxidoreductase J3K87_06770 PF17674 HHH domain J3K87_06770 PF09371 Tex-like protein N-terminal domain J3K87_06770 PF16921 Tex protein YqgF-like domain J3K87_06770 PF00575 S1 RNA binding domain J3K87_06780 PF04055 Radical SAM superfamily J3K87_06805 PF00749 tRNA synthetases class I (E and Q), catalytic domain J3K87_06815 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system J3K87_06820 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system J3K87_06825 PF03966 Trm112p-like protein J3K87_06830 PF02606 Tetraacyldisaccharide-1-P 4'-kinase J3K87_06835 PF06689 ClpX C4-type zinc finger J3K87_06835 PF10431 C-terminal, D2-small domain, of ClpB protein J3K87_06835 PF07724 AAA domain (Cdc48 subfamily) J3K87_06840 PF00574 Clp protease J3K87_06845 PF02657 Fe-S metabolism associated domain J3K87_06860 PF00929 Exonuclease J3K87_06865 PF12848 ABC transporter J3K87_06865 PF00005 ABC transporter J3K87_06870 PF02627 Carboxymuconolactone decarboxylase family J3K87_06885 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) J3K87_06890 PF01722 BolA-like protein J3K87_06900 PF05494 MlaC protein J3K87_06905 PF02470 MlaD protein J3K87_06910 PF02405 Permease MlaE J3K87_06915 PF00005 ABC transporter J3K87_06920 PF00595 PDZ domain J3K87_06925 PF08338 Domain of unknown function (DUF1731) J3K87_06925 PF01370 NAD dependent epimerase/dehydratase family J3K87_06930 PF01316 Arginine repressor, DNA binding domain J3K87_06930 PF02863 Arginine repressor, C-terminal domain J3K87_06935 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain J3K87_06935 PF00056 lactate/malate dehydrogenase, NAD binding domain J3K87_06945 PF05191 Adenylate kinase, active site lid J3K87_06955 PF07690 Major Facilitator Superfamily J3K87_06960 PF01370 NAD dependent epimerase/dehydratase family J3K87_06965 PF12826 Helix-hairpin-helix motif J3K87_06965 PF03119 NAD-dependent DNA ligase C4 zinc finger domain J3K87_06965 PF03120 NAD-dependent DNA ligase OB-fold domain J3K87_06965 PF01653 NAD-dependent DNA ligase adenylation domain J3K87_06965 PF00533 BRCA1 C Terminus (BRCT) domain J3K87_06970 PF04354 ZipA, C-terminal FtsZ-binding domain J3K87_06985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase J3K87_06985 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain J3K87_06995 PF01177 Asp/Glu/Hydantoin racemase J3K87_07000 PF07690 Major Facilitator Superfamily J3K87_07005 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J3K87_07010 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain J3K87_07010 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain J3K87_07015 PF00459 Inositol monophosphatase family J3K87_07020 PF00293 NUDIX domain J3K87_07025 PF01479 S4 domain J3K87_07030 PF01430 Hsp33 protein J3K87_07035 PF03605 Anaerobic c4-dicarboxylate membrane transporter J3K87_07040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain J3K87_07040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain J3K87_07045 PF00696 Amino acid kinase family J3K87_07050 PF02378 Phosphotransferase system, EIIC J3K87_07050 PF00367 phosphotransferase system, EIIB J3K87_07055 PF00005 ABC transporter J3K87_07060 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_07065 PF00381 PTS HPr component phosphorylation site J3K87_07070 PF05524 PEP-utilising enzyme, N-terminal J3K87_07070 PF00391 PEP-utilising enzyme, mobile domain J3K87_07070 PF02896 PEP-utilising enzyme, TIM barrel domain J3K87_07075 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 J3K87_07080 PF01938 TRAM domain J3K87_07080 PF04055 Radical SAM superfamily J3K87_07080 PF00919 Uncharacterized protein family UPF0004 J3K87_07085 PF13361 UvrD-like helicase C-terminal domain J3K87_07085 PF00580 UvrD/REP helicase N-terminal domain J3K87_07090 PF02492 CobW/HypB/UreG, nucleotide-binding domain J3K87_07095 PF01924 Hydrogenase formation hypA family J3K87_07100 PF00586 AIR synthase related protein, N-terminal domain J3K87_07100 PF02769 AIR synthase related protein, C-terminal domain J3K87_07105 PF13533 Biotin-lipoyl like J3K87_07110 PF00664 ABC transporter transmembrane region J3K87_07110 PF03412 Peptidase C39 family J3K87_07110 PF00005 ABC transporter J3K87_07115 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J3K87_07115 PF02382 N-terminal domain in RTX protein J3K87_07115 PF08339 RTX C-terminal domain J3K87_07120 PF02794 RTX toxin acyltransferase family J3K87_07125 PF07503 HypF finger J3K87_07125 PF01300 Telomere recombination J3K87_07125 PF17788 HypF Kae1-like domain J3K87_07125 PF00708 Acylphosphatase J3K87_07130 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit J3K87_07130 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal J3K87_07135 PF13247 4Fe-4S dicluster domain J3K87_07140 PF03916 Polysulphide reductase, NrfD J3K87_07145 PF00374 Nickel-dependent hydrogenase J3K87_07150 PF01750 Hydrogenase maturation protease J3K87_07155 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE J3K87_07160 PF01455 HupF/HypC family J3K87_07165 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA J3K87_07200 PF17757 UvrB interaction domain J3K87_07200 PF03461 TRCF domain J3K87_07200 PF00271 Helicase conserved C-terminal domain J3K87_07200 PF00270 DEAD/DEAH box helicase J3K87_07200 PF02559 CarD-like/TRCF domain J3K87_07205 PF11940 Domain of unknown function (DUF3458) Ig-like fold J3K87_07205 PF01433 Peptidase family M1 domain J3K87_07205 PF17432 Domain of unknown function (DUF3458_C) ARM repeats J3K87_07210 PF02660 Glycerol-3-phosphate acyltransferase J3K87_07215 PF02152 Dihydroneopterin aldolase J3K87_07220 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region J3K87_07220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region J3K87_07225 PF18075 FtsX extracellular domain J3K87_07230 PF00005 ABC transporter J3K87_07235 PF02881 SRP54-type protein, helical bundle domain J3K87_07235 PF00448 SRP54-type protein, GTPase domain J3K87_07245 PF04269 Protein of unknown function, DUF440 J3K87_07250 PF01613 Flavin reductase like domain J3K87_07255 PF03848 Tellurite resistance protein TehB J3K87_07255 PF09313 Domain of unknown function (DUF1971) J3K87_07260 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_07265 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_07270 PF00497 Bacterial extracellular solute-binding proteins, family 3 J3K87_07275 PF00005 ABC transporter J3K87_07280 PF01161 Phosphatidylethanolamine-binding protein J3K87_07285 PF01699 Sodium/calcium exchanger protein J3K87_07290 PF01381 Helix-turn-helix J3K87_07300 PF13098 Thioredoxin-like domain J3K87_07300 PF02683 Cytochrome C biogenesis protein transmembrane region J3K87_07300 PF11412 Disulphide bond corrector protein DsbC J3K87_07305 PF04315 Elongation factor P hydroxylase J3K87_07310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J3K87_07315 PF04348 LppC putative lipoprotein J3K87_07320 PF02021 Uncharacterised protein family UPF0102 J3K87_07325 PF13580 SIS domain J3K87_07330 PF04972 BON domain J3K87_07340 PF01464 Transglycosylase SLT domain J3K87_07340 PF00497 Bacterial extracellular solute-binding proteins, family 3 J3K87_07360 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal J3K87_07360 PF01578 Cytochrome C assembly protein J3K87_07365 PF03100 CcmE J3K87_07370 PF04995 Heme exporter protein D (CcmD) J3K87_07375 PF01578 Cytochrome C assembly protein J3K87_07380 PF03379 CcmB protein J3K87_07385 PF00005 ABC transporter J3K87_07390 PF00308 Bacterial dnaA protein J3K87_07420 PF04277 Oxaloacetate decarboxylase, gamma chain J3K87_07425 PF00682 HMGL-like J3K87_07425 PF02436 Conserved carboxylase domain J3K87_07425 PF00364 Biotin-requiring enzyme J3K87_07430 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit J3K87_07435 PF08274 PhnA Zinc-Ribbon J3K87_07435 PF03831 PhnA domain J3K87_07440 PF00034 Cytochrome c J3K87_07440 PF03150 Di-haem cytochrome c peroxidase J3K87_07440 PF14376 Haem-binding domain J3K87_07445 PF02594 Uncharacterised ACR, YggU family COG1872 J3K87_07450 PF02325 YGGT family J3K87_07455 PF04320 Protein with unknown function (DUF469) J3K87_07460 PF02390 Putative methyltransferase J3K87_07465 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III J3K87_07465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal J3K87_07470 PF02504 Fatty acid synthesis protein J3K87_07475 PF01783 Ribosomal L32p protein family J3K87_07480 PF02620 Large ribosomal RNA subunit accumulation protein YceD J3K87_07485 PF01578 Cytochrome C assembly protein J3K87_07490 PF01595 Cyclin M transmembrane N-terminal domain J3K87_07490 PF03471 Transporter associated domain J3K87_07490 PF00571 CBS domain J3K87_07495 PF00209 Sodium:neurotransmitter symporter family J3K87_07505 PF03830 PTS system sorbose subfamily IIB component J3K87_07505 PF03610 PTS system fructose IIA component J3K87_07510 PF03609 PTS system sorbose-specific iic component J3K87_07515 PF03613 PTS system mannose/fructose/sorbose family IID component J3K87_07520 PF06173 Protein of unknown function (DUF986) J3K87_07525 PF01238 Phosphomannose isomerase type I J3K87_07540 PF03412 Peptidase C39 family J3K87_07540 PF00005 ABC transporter J3K87_07540 PF00664 ABC transporter transmembrane region J3K87_07545 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) J3K87_07545 PF08339 RTX C-terminal domain J3K87_07545 PF02382 N-terminal domain in RTX protein J3K87_07555 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_07560 PF00005 ABC transporter J3K87_07560 PF08402 TOBE domain J3K87_07565 PF01225 Mur ligase family, catalytic domain J3K87_07565 PF02875 Mur ligase family, glutamate ligase domain J3K87_07565 PF08245 Mur ligase middle domain J3K87_07570 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain J3K87_07580 PF00009 Elongation factor Tu GTP binding domain J3K87_07580 PF03143 Elongation factor Tu C-terminal domain J3K87_07580 PF03144 Elongation factor Tu domain 2 J3K87_07585 PF03144 Elongation factor Tu domain 2 J3K87_07585 PF00009 Elongation factor Tu GTP binding domain J3K87_07585 PF03764 Elongation factor G, domain IV J3K87_07585 PF14492 Elongation Factor G, domain II J3K87_07585 PF00679 Elongation factor G C-terminus J3K87_07590 PF00177 Ribosomal protein S7p/S5e J3K87_07595 PF00164 Ribosomal protein S12/S23 J3K87_07600 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J3K87_07605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) J3K87_07615 PF04225 Opacity-associated protein A LysM-like domain J3K87_07615 PF08525 Opacity-associated protein A N-terminal motif J3K87_07625 PF02666 Phosphatidylserine decarboxylase J3K87_07630 PF08463 EcoEI R protein C-terminal J3K87_07630 PF04851 Type III restriction enzyme, res subunit J3K87_07630 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) J3K87_07630 PF00271 Helicase conserved C-terminal domain J3K87_07635 PF12161 HsdM N-terminal domain J3K87_07635 PF02384 N-6 DNA Methylase J3K87_07645 PF01420 Type I restriction modification DNA specificity domain J3K87_07650 PF02899 Phage integrase, N-terminal SAM-like domain J3K87_07650 PF00589 Phage integrase family J3K87_07655 PF01420 Type I restriction modification DNA specificity domain J3K87_07660 PF18419 ATP-grasp-like domain J3K87_07660 PF04262 Glutamate-cysteine ligase J3K87_07660 PF02655 ATP-grasp domain J3K87_07670 PF03222 Tryptophan/tyrosine permease family J3K87_07675 PF04175 Protein of unknown function (DUF406) J3K87_07680 PF00248 Aldo/keto reductase family J3K87_07685 PF00501 AMP-binding enzyme J3K87_07690 PF06039 Malate:quinone oxidoreductase (Mqo) J3K87_07710 PF02653 Branched-chain amino acid transport system / permease component J3K87_07715 PF00005 ABC transporter J3K87_07720 PF13407 Periplasmic binding protein domain J3K87_07725 PF01389 OmpA-like transmembrane domain J3K87_07725 PF00691 OmpA family J3K87_07730 PF13183 4Fe-4S dicluster domain J3K87_07730 PF01565 FAD binding domain J3K87_07730 PF02913 FAD linked oxidases, C-terminal domain J3K87_07735 PF03061 Thioesterase superfamily J3K87_07740 PF02096 60Kd inner membrane protein J3K87_07740 PF14849 YidC periplasmic domain J3K87_07745 PF03264 NapC/NirT cytochrome c family, N-terminal region J3K87_07750 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) J3K87_07755 PF12801 4Fe-4S binding domain J3K87_07755 PF12837 4Fe-4S binding domain J3K87_07760 PF12838 4Fe-4S dicluster domain J3K87_07760 PF12800 4Fe-4S binding domain J3K87_07765 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J3K87_07765 PF00384 Molybdopterin oxidoreductase J3K87_07765 PF01568 Molydopterin dinucleotide binding domain J3K87_07765 PF10518 TAT (twin-arginine translocation) pathway signal sequence J3K87_07775 PF12838 4Fe-4S dicluster domain J3K87_07775 PF13187 4Fe-4S dicluster domain J3K87_07780 PF02525 Flavodoxin-like fold J3K87_07795 PF10150 Ribonuclease E/G family J3K87_07795 PF00575 S1 RNA binding domain J3K87_07795 PF12111 Polyribonucleotide phosphorylase C terminal J3K87_07805 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family J3K87_07810 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase J3K87_07815 PF01297 Zinc-uptake complex component A periplasmic J3K87_07825 PF08534 Redoxin J3K87_07825 PF00462 Glutaredoxin J3K87_07830 PF03466 LysR substrate binding domain J3K87_07830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_07835 PF00440 Bacterial regulatory proteins, tetR family J3K87_07840 PF00578 AhpC/TSA family J3K87_07845 PF08461 Ribonuclease R winged-helix domain J3K87_07845 PF00773 RNB domain J3K87_07845 PF00575 S1 RNA binding domain J3K87_07845 PF08206 Ribonuclease B OB domain J3K87_07845 PF17876 Cold shock domain J3K87_07855 PF00579 tRNA synthetases class I (W and Y) J3K87_07855 PF01479 S4 domain J3K87_07860 PF03979 Sigma-70 factor, region 1.1 J3K87_07860 PF04546 Sigma-70, non-essential region J3K87_07860 PF04539 Sigma-70 region 3 J3K87_07860 PF04545 Sigma-70, region 4 J3K87_07860 PF04542 Sigma-70 region 2 J3K87_07860 PF00140 Sigma-70 factor, region 1.2 J3K87_07865 PF10410 DnaB-helicase binding domain of primase J3K87_07865 PF01807 CHC2 zinc finger J3K87_07865 PF08275 DNA primase catalytic core, N-terminal domain J3K87_07865 PF08278 DNA primase DnaG DnaB-binding J3K87_07870 PF01165 Ribosomal protein S21 J3K87_07875 PF16363 GDP-mannose 4,6 dehydratase J3K87_07890 PF01757 Acyltransferase family J3K87_07895 PF02397 Bacterial sugar transferase J3K87_07900 PF03275 UDP-galactopyranose mutase J3K87_07905 PF01943 Polysaccharide biosynthesis protein J3K87_07925 PF00534 Glycosyl transferases group 1 J3K87_07925 PF13439 Glycosyltransferase Family 4 J3K87_07940 PF01521 Iron-sulphur cluster biosynthesis J3K87_07945 PF01040 UbiA prenyltransferase family J3K87_07950 PF06250 YhcG PDDEXK nuclease domain J3K87_07950 PF17761 DUF1016 N-terminal domain J3K87_07955 PF18389 TrmO C-terminal domain J3K87_07955 PF01980 tRNA-methyltransferase O J3K87_07965 PF00230 Major intrinsic protein J3K87_07975 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J3K87_07980 PF00585 C-terminal regulatory domain of Threonine dehydratase J3K87_07980 PF00291 Pyridoxal-phosphate dependent enzyme J3K87_07985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain J3K87_07985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III J3K87_07985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II J3K87_07985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I J3K87_07990 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) J3K87_07995 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J3K87_07995 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J3K87_08010 PF08543 Phosphomethylpyrimidine kinase J3K87_08020 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit J3K87_08025 PF07732 Multicopper oxidase J3K87_08025 PF07731 Multicopper oxidase J3K87_08030 PF01553 Acyltransferase J3K87_08035 PF08534 Redoxin J3K87_08040 PF10396 GTP-binding protein TrmE N-terminus J3K87_08040 PF12631 MnmE helical domain J3K87_08040 PF01926 50S ribosome-binding GTPase J3K87_08045 PF05167 Uncharacterised ACR (DUF711) J3K87_08055 PF02678 Pirin J3K87_08055 PF17954 Quercetinase C-terminal cupin domain J3K87_08060 PF00210 Ferritin-like domain J3K87_08075 PF12805 FUSC-like inner membrane protein yccS J3K87_08080 PF02142 MGS-like domain J3K87_08085 PF00291 Pyridoxal-phosphate dependent enzyme J3K87_08085 PF14821 Threonine synthase N terminus J3K87_08095 PF00133 tRNA synthetases class I (I, L, M and V) J3K87_08095 PF10458 Valyl tRNA synthetase tRNA binding arm J3K87_08095 PF08264 Anticodon-binding domain of tRNA J3K87_08110 PF13673 Acetyltransferase (GNAT) domain J3K87_08115 PF04364 DNA polymerase III chi subunit, HolC J3K87_08120 PF01476 LysM domain J3K87_08125 PF05698 Bacterial trigger factor protein (TF) C-terminus J3K87_08125 PF05697 Bacterial trigger factor protein (TF) J3K87_08125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J3K87_08130 PF00581 Rhodanese-like domain J3K87_08135 PF02556 Preprotein translocase subunit SecB J3K87_08140 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus J3K87_08140 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus J3K87_08145 PF00132 Bacterial transferase hexapeptide (six repeats) J3K87_08145 PF06426 Serine acetyltransferase, N-terminal J3K87_08150 PF03144 Elongation factor Tu domain 2 J3K87_08150 PF00009 Elongation factor Tu GTP binding domain J3K87_08150 PF03143 Elongation factor Tu C-terminal domain J3K87_08175 PF00485 Phosphoribulokinase / Uridine kinase family J3K87_08180 PF08534 Redoxin J3K87_08185 PF03918 Cytochrome C biogenesis protein J3K87_08190 PF03918 Cytochrome C biogenesis protein J3K87_08195 PF00994 Probable molybdopterin binding domain J3K87_08200 PF00543 Nitrogen regulatory protein P-II J3K87_08205 PF01252 Signal peptidase (SPase) II J3K87_08210 PF02401 LytB protein J3K87_08215 PF03937 Flavinator of succinate dehydrogenase J3K87_08225 PF04055 Radical SAM superfamily J3K87_08230 PF02798 Glutathione S-transferase, N-terminal domain J3K87_08230 PF00043 Glutathione S-transferase, C-terminal domain J3K87_08235 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain J3K87_08235 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain J3K87_08245 PF02313 Fumarate reductase subunit D J3K87_08250 PF02300 Fumarate reductase subunit C J3K87_08255 PF13183 4Fe-4S dicluster domain J3K87_08255 PF13085 2Fe-2S iron-sulfur cluster binding domain J3K87_08260 PF02910 Fumarate reductase flavoprotein C-term J3K87_08260 PF00890 FAD binding domain J3K87_08265 PF00152 tRNA synthetases class II (D, K and N) J3K87_08270 PF01678 Diaminopimelate epimerase J3K87_08275 PF03605 Anaerobic c4-dicarboxylate membrane transporter J3K87_08280 PF02537 CrcB-like protein, Camphor Resistance (CrcB) J3K87_08290 PF03702 Anhydro-N-acetylmuramic acid kinase J3K87_08295 PF01380 SIS domain J3K87_08315 PF01523 Putative modulator of DNA gyrase J3K87_08320 PF01171 PP-loop family J3K87_08320 PF11734 TilS substrate C-terminal domain J3K87_08320 PF09179 TilS substrate binding domain J3K87_08330 PF02899 Phage integrase, N-terminal SAM-like domain J3K87_08330 PF00589 Phage integrase family J3K87_08385 PF03808 Glycosyl transferase WecB/TagA/CpsF family J3K87_08390 PF06899 WzyE protein, O-antigen assembly polymerase J3K87_08395 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 J3K87_08400 PF03063 Prismane/CO dehydrogenase family J3K87_08405 PF00175 Oxidoreductase NAD-binding domain J3K87_08405 PF00111 2Fe-2S iron-sulfur cluster binding domain J3K87_08405 PF00970 Oxidoreductase FAD-binding domain J3K87_08410 PF01943 Polysaccharide biosynthesis protein J3K87_08415 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family J3K87_08425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain J3K87_08425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain J3K87_08425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain J3K87_08430 PF02350 UDP-N-acetylglucosamine 2-epimerase J3K87_08440 PF00953 Glycosyl transferase family 4 J3K87_08445 PF00202 Aminotransferase class-III J3K87_08455 PF03023 Lipid II flippase MurJ J3K87_08460 PF01649 Ribosomal protein S20 J3K87_08465 PF02254 TrkA-N domain J3K87_08465 PF02080 TrkA-C domain J3K87_08470 PF01189 16S rRNA methyltransferase RsmB/F J3K87_08470 PF01029 NusB family J3K87_08475 PF00009 Elongation factor Tu GTP binding domain J3K87_08475 PF03144 Elongation factor Tu domain 2 J3K87_08475 PF09106 Elongation factor SelB, winged helix J3K87_08475 PF09107 Elongation factor SelB, winged helix J3K87_08480 PF03841 L-seryl-tRNA selenium transferase J3K87_08490 PF00258 Flavodoxin J3K87_08495 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J3K87_08495 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J3K87_08510 PF00593 TonB dependent receptor J3K87_08510 PF07715 TonB-dependent Receptor Plug Domain J3K87_08515 PF17484 N-Lobe handle Tf-binding protein B J3K87_08515 PF17483 C-lobe handle domain of Tf-binding protein B J3K87_08515 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B J3K87_08520 PF02472 Biopolymer transport protein ExbD/TolR J3K87_08525 PF01618 MotA/TolQ/ExbB proton channel family J3K87_08535 PF03956 Lysine exporter LysO J3K87_08550 PF06821 Serine hydrolase J3K87_08570 PF00665 Integrase core domain J3K87_08570 PF13936 Helix-turn-helix domain J3K87_08575 PF11380 Stealth protein CR2, conserved region 2 J3K87_08575 PF17101 Stealth protein CR1, conserved region 1 J3K87_08580 PF00535 Glycosyl transferase family 2 J3K87_08580 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase J3K87_08590 PF02563 Polysaccharide biosynthesis/export protein J3K87_08600 PF01061 ABC-2 type transporter J3K87_08605 PF00005 ABC transporter J3K87_08610 PF00005 ABC transporter J3K87_08615 PF00551 Formyl transferase J3K87_08615 PF02911 Formyl transferase, C-terminal domain J3K87_08625 PF01205 Uncharacterized protein family UPF0029 J3K87_08625 PF09186 Domain of unknown function (DUF1949) J3K87_08630 PF02386 Cation transport protein J3K87_08635 PF12724 Flavodoxin domain J3K87_08640 PF01741 Large-conductance mechanosensitive channel, MscL J3K87_08650 PF04055 Radical SAM superfamily J3K87_08655 PF03099 Biotin/lipoate A/B protein ligase family J3K87_08660 PF04359 Protein of unknown function (DUF493) J3K87_08665 PF00768 D-alanyl-D-alanine carboxypeptidase J3K87_08665 PF07943 Penicillin-binding protein 5, C-terminal domain J3K87_08670 PF03330 Lytic transglycolase J3K87_08675 PF01098 Cell cycle protein J3K87_08680 PF00905 Penicillin binding protein transpeptidase domain J3K87_08680 PF03717 Penicillin-binding Protein dimerisation domain J3K87_08685 PF02590 Predicted SPOUT methyltransferase J3K87_08695 PF05188 MutS domain II J3K87_08695 PF01624 MutS domain I J3K87_08695 PF05192 MutS domain III J3K87_08695 PF05190 MutS family domain IV J3K87_08695 PF00488 MutS domain V J3K87_08700 PF00005 ABC transporter J3K87_08710 PF03313 Serine dehydratase alpha chain J3K87_08715 PF01814 Hemerythrin HHE cation binding domain J3K87_08715 PF04405 Domain of Unknown function (DUF542) J3K87_08720 PF00893 Small Multidrug Resistance protein J3K87_08725 PF04175 Protein of unknown function (DUF406) J3K87_08740 PF01774 UreD urease accessory protein J3K87_08745 PF02492 CobW/HypB/UreG, nucleotide-binding domain J3K87_08750 PF01730 UreF J3K87_08755 PF05194 UreE urease accessory protein, C-terminal domain J3K87_08755 PF02814 UreE urease accessory protein, N-terminal domain J3K87_08765 PF00449 Urease alpha-subunit, N-terminal domain J3K87_08765 PF01979 Amidohydrolase family J3K87_08770 PF00699 Urease beta subunit J3K87_08775 PF00547 Urease, gamma subunit J3K87_08785 PF00005 ABC transporter J3K87_08795 PF01891 Cobalt uptake substrate-specific transmembrane region J3K87_08805 PF10670 Domain of unknown function (DUF4198) J3K87_08810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_08810 PF03466 LysR substrate binding domain J3K87_08820 PF02080 TrkA-C domain J3K87_08820 PF03600 Citrate transporter J3K87_08825 PF05068 Mannitol repressor J3K87_08830 PF08125 Mannitol dehydrogenase C-terminal domain J3K87_08830 PF01232 Mannitol dehydrogenase Rossmann domain J3K87_08835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J3K87_08835 PF02378 Phosphotransferase system, EIIC J3K87_08835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit J3K87_08840 PF01380 SIS domain J3K87_08845 PF00455 DeoR C terminal sensor domain J3K87_08845 PF08220 DeoR-like helix-turn-helix domain J3K87_08860 PF18071 HMW1C N-terminal J3K87_08860 PF18254 HMW1 domain 2 J3K87_08865 PF00919 Uncharacterized protein family UPF0004 J3K87_08865 PF04055 Radical SAM superfamily J3K87_08865 PF18693 TRAM domain J3K87_08870 PF01048 Phosphorylase superfamily J3K87_08880 PF04102 SlyX J3K87_08885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J3K87_08885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J3K87_08890 PF08348 YheO-like PAS domain J3K87_08890 PF13309 HTH domain J3K87_08895 PF02635 DsrE/DsrF-like family J3K87_08900 PF02635 DsrE/DsrF-like family J3K87_08905 PF04077 DsrH like protein J3K87_08935 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain J3K87_08940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3K87_08940 PF02874 ATP synthase alpha/beta family, beta-barrel domain J3K87_08945 PF00231 ATP synthase J3K87_08950 PF00306 ATP synthase alpha/beta chain, C terminal domain J3K87_08950 PF02874 ATP synthase alpha/beta family, beta-barrel domain J3K87_08950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain J3K87_08955 PF00213 ATP synthase delta (OSCP) subunit J3K87_08960 PF00430 ATP synthase B/B' CF(0) J3K87_08965 PF00137 ATP synthase subunit C J3K87_08970 PF00119 ATP synthase A chain J3K87_08980 PF02527 rRNA small subunit methyltransferase G J3K87_08985 PF13932 GidA associated domain J3K87_08985 PF01134 Glucose inhibited division protein A J3K87_08995 PF00497 Bacterial extracellular solute-binding proteins, family 3 J3K87_09000 PF02810 SEC-C motif J3K87_09010 PF03613 PTS system mannose/fructose/sorbose family IID component J3K87_09015 PF03609 PTS system sorbose-specific iic component J3K87_09020 PF03830 PTS system sorbose subfamily IIB component J3K87_09020 PF03610 PTS system fructose IIA component J3K87_09025 PF02447 GntP family permease J3K87_09030 PF01202 Shikimate kinase J3K87_09035 PF00356 Bacterial regulatory proteins, lacI family J3K87_09035 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family J3K87_09040 PF00356 Bacterial regulatory proteins, lacI family J3K87_09045 PF05025 RbsD / FucU transport protein family J3K87_09050 PF00005 ABC transporter J3K87_09055 PF02653 Branched-chain amino acid transport system / permease component J3K87_09060 PF13407 Periplasmic binding protein domain J3K87_09065 PF00294 pfkB family carbohydrate kinase J3K87_09070 PF01568 Molydopterin dinucleotide binding domain J3K87_09070 PF00384 Molybdopterin oxidoreductase J3K87_09070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain J3K87_09075 PF12800 4Fe-4S binding domain J3K87_09075 PF13247 4Fe-4S dicluster domain J3K87_09080 PF04976 DMSO reductase anchor subunit (DmsC) J3K87_09085 PF02613 Nitrate reductase delta subunit J3K87_09090 PF00037 4Fe-4S binding domain J3K87_09090 PF12838 4Fe-4S dicluster domain J3K87_09115 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal J3K87_09115 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain J3K87_09115 PF02769 AIR synthase related protein, C-terminal domain J3K87_09120 PF08220 DeoR-like helix-turn-helix domain J3K87_09120 PF00455 DeoR C terminal sensor domain J3K87_09125 PF02952 L-fucose isomerase, C-terminal domain J3K87_09125 PF07881 L-fucose isomerase, first N-terminal domain J3K87_09125 PF07882 L-fucose isomerase, second N-terminal domain J3K87_09130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J3K87_09130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J3K87_09135 PF05025 RbsD / FucU transport protein family J3K87_09140 PF00596 Class II Aldolase and Adducin N-terminal domain J3K87_09145 PF07690 Major Facilitator Superfamily J3K87_09150 PF00465 Iron-containing alcohol dehydrogenase J3K87_09155 PF07274 Protein of unknown function (DUF1440) J3K87_09160 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_09165 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_09170 PF00005 ABC transporter J3K87_09175 PF00497 Bacterial extracellular solute-binding proteins, family 3 J3K87_09180 PF05159 Capsule polysaccharide biosynthesis protein J3K87_09185 PF05159 Capsule polysaccharide biosynthesis protein J3K87_09195 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family J3K87_09200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 J3K87_09205 PF03611 PTS system sugar-specific permease component J3K87_09215 PF00455 DeoR C terminal sensor domain J3K87_09215 PF08220 DeoR-like helix-turn-helix domain J3K87_09220 PF01261 Xylose isomerase-like TIM barrel J3K87_09225 PF00596 Class II Aldolase and Adducin N-terminal domain J3K87_09230 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase J3K87_09230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase J3K87_09250 PF04575 Protein of unknown function (DUF560) J3K87_09255 PF01370 NAD dependent epimerase/dehydratase family J3K87_09260 PF01327 Polypeptide deformylase J3K87_09265 PF17782 DprA winged helix domain J3K87_09265 PF02481 DNA recombination-mediator protein A J3K87_09270 PF03169 OPT oligopeptide transporter protein J3K87_09275 PF03611 PTS system sugar-specific permease component J3K87_09285 PF00584 SecE/Sec61-gamma subunits of protein translocation complex J3K87_09290 PF02357 Transcription termination factor nusG J3K87_09290 PF00467 KOW motif J3K87_09295 PF03946 Ribosomal protein L11, N-terminal domain J3K87_09295 PF00298 Ribosomal protein L11, RNA binding domain J3K87_09300 PF00687 Ribosomal protein L1p/L10e family J3K87_09305 PF00466 Ribosomal protein L10 J3K87_09310 PF00542 Ribosomal protein L7/L12 C-terminal domain J3K87_09310 PF16320 Ribosomal protein L7/L12 dimerisation domain J3K87_09350 PF04563 RNA polymerase beta subunit J3K87_09350 PF04561 RNA polymerase Rpb2, domain 2 J3K87_09350 PF04565 RNA polymerase Rpb2, domain 3 J3K87_09350 PF00562 RNA polymerase Rpb2, domain 6 J3K87_09350 PF10385 RNA polymerase beta subunit external 1 domain J3K87_09350 PF04560 RNA polymerase Rpb2, domain 7 J3K87_09355 PF04997 RNA polymerase Rpb1, domain 1 J3K87_09355 PF00623 RNA polymerase Rpb1, domain 2 J3K87_09355 PF04983 RNA polymerase Rpb1, domain 3 J3K87_09355 PF05000 RNA polymerase Rpb1, domain 4 J3K87_09355 PF04998 RNA polymerase Rpb1, domain 5 J3K87_09375 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin J3K87_09380 PF01850 PIN domain J3K87_09400 PF00004 ATPase family associated with various cellular activities (AAA) J3K87_09400 PF07724 AAA domain (Cdc48 subfamily) J3K87_09400 PF10431 C-terminal, D2-small domain, of ClpB protein J3K87_09405 PF00227 Proteasome subunit J3K87_09410 PF03749 Sugar fermentation stimulation protein RE domain J3K87_09410 PF17746 SfsA N-terminal OB domain J3K87_09415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily J3K87_09420 PF14815 NUDIX domain J3K87_09420 PF00730 HhH-GPD superfamily base excision DNA repair protein J3K87_09425 PF04362 Bacterial Fe(2+) trafficking J3K87_09430 PF01464 Transglycosylase SLT domain J3K87_09430 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain J3K87_09445 PF02978 Signal peptide binding domain J3K87_09445 PF02881 SRP54-type protein, helical bundle domain J3K87_09445 PF00448 SRP54-type protein, GTPase domain J3K87_09450 PF02872 5'-nucleotidase, C-terminal domain J3K87_09450 PF00149 Calcineurin-like phosphoesterase J3K87_09455 PF01494 FAD binding domain J3K87_09460 PF01381 Helix-turn-helix J3K87_09465 PF01078 Magnesium chelatase, subunit ChlI J3K87_09465 PF13335 Magnesium chelatase, subunit ChlI C-terminal J3K87_09475 PF12697 Alpha/beta hydrolase family J3K87_09480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain J3K87_09480 PF16582 Middle domain of thiamine pyrophosphate J3K87_09480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain J3K87_09485 PF02348 Cytidylyltransferase J3K87_09485 PF13472 GDSL-like Lipase/Acylhydrolase family J3K87_09490 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase J3K87_09495 PF00480 ROK family J3K87_09500 PF00701 Dihydrodipicolinate synthetase family J3K87_09505 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase J3K87_09510 PF01979 Amidohydrolase family J3K87_09515 PF00206 Lyase J3K87_09515 PF10415 Fumarase C C-terminus J3K87_09525 PF00338 Ribosomal protein S10p/S20e J3K87_09530 PF00297 Ribosomal protein L3 J3K87_09535 PF00573 Ribosomal protein L4/L1 family J3K87_09540 PF00276 Ribosomal protein L23 J3K87_09545 PF00181 Ribosomal Proteins L2, RNA binding domain J3K87_09545 PF03947 Ribosomal Proteins L2, C-terminal domain J3K87_09550 PF00203 Ribosomal protein S19 J3K87_09555 PF00237 Ribosomal protein L22p/L17e J3K87_09560 PF07650 KH domain J3K87_09560 PF00189 Ribosomal protein S3, C-terminal domain J3K87_09565 PF00252 Ribosomal protein L16p/L10e J3K87_09570 PF00831 Ribosomal L29 protein J3K87_09575 PF00366 Ribosomal protein S17 J3K87_09580 PF00238 Ribosomal protein L14p/L23e J3K87_09585 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 J3K87_09585 PF00467 KOW motif J3K87_09590 PF00673 ribosomal L5P family C-terminus J3K87_09590 PF00281 Ribosomal protein L5 J3K87_09595 PF00253 Ribosomal protein S14p/S29e J3K87_09600 PF00410 Ribosomal protein S8 J3K87_09605 PF00347 Ribosomal protein L6 J3K87_09610 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast J3K87_09615 PF00333 Ribosomal protein S5, N-terminal domain J3K87_09615 PF03719 Ribosomal protein S5, C-terminal domain J3K87_09620 PF00327 Ribosomal protein L30p/L7e J3K87_09625 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A J3K87_09630 PF00344 SecY translocase J3K87_09635 PF00444 Ribosomal protein L36 J3K87_09640 PF00416 Ribosomal protein S13/S18 J3K87_09645 PF00411 Ribosomal protein S11 J3K87_09650 PF00163 Ribosomal protein S4/S9 N-terminal domain J3K87_09650 PF01479 S4 domain J3K87_09655 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain J3K87_09655 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain J3K87_09655 PF01000 RNA polymerase Rpb3/RpoA insert domain J3K87_09660 PF01196 Ribosomal protein L17 J3K87_09665 PF00886 Ribosomal protein S16 J3K87_09670 PF05239 PRC-barrel domain J3K87_09670 PF01782 RimM N-terminal domain J3K87_09675 PF01746 tRNA (Guanine-1)-methyltransferase J3K87_09680 PF01245 Ribosomal protein L19 J3K87_09685 PF08007 Cupin superfamily protein J3K87_09690 PF01497 Periplasmic binding protein J3K87_09695 PF01032 FecCD transport family J3K87_09700 PF00005 ABC transporter J3K87_09705 PF00127 Copper binding proteins, plastocyanin/azurin family J3K87_09720 PF02613 Nitrate reductase delta subunit J3K87_09735 PF02091 Glycyl-tRNA synthetase alpha subunit J3K87_09740 PF04480 Protein of unknown function (DUF559) J3K87_09750 PF02092 Glycyl-tRNA synthetase beta subunit J3K87_09750 PF05746 DALR anticodon binding domain J3K87_09755 PF17347 Family of unknown function (DUF5377) J3K87_09760 PF02899 Phage integrase, N-terminal SAM-like domain J3K87_09760 PF00589 Phage integrase family J3K87_09765 PF04304 Protein of unknown function (DUF454) J3K87_09775 PF00149 Calcineurin-like phosphoesterase J3K87_09780 PF07509 Protein of unknown function (DUF1523) J3K87_09785 PF01026 TatD related DNase J3K87_09795 PF00005 ABC transporter J3K87_09795 PF12704 MacB-like periplasmic core domain J3K87_09795 PF02687 FtsX-like permease family J3K87_09800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion J3K87_09805 PF06629 MltA-interacting protein MipA J3K87_09810 PF09115 DNA polymerase III, delta subunit, C terminal J3K87_09815 PF02223 Thymidylate kinase J3K87_09820 PF02618 YceG-like family J3K87_09840 PF00550 Phosphopantetheine attachment site J3K87_09845 PF00834 Ribulose-phosphate 3 epimerase family J3K87_09850 PF01197 Ribosomal protein L31 J3K87_09855 PF00444 Ribosomal protein L36 J3K87_09860 PF14814 Bifunctional transglycosylase second domain J3K87_09860 PF00912 Transglycosylase J3K87_09860 PF00905 Penicillin binding protein transpeptidase domain J3K87_09865 PF00378 Enoyl-CoA hydratase/isomerase J3K87_09870 PF04607 Region found in RelA / SpoT proteins J3K87_09870 PF02824 TGS domain J3K87_09870 PF13291 ACT domain J3K87_09875 PF01192 RNA polymerase Rpb6 J3K87_09880 PF00271 Helicase conserved C-terminal domain J3K87_09880 PF17191 RecG wedge domain J3K87_09880 PF00270 DEAD/DEAH box helicase J3K87_09895 PF03129 Anticodon binding domain J3K87_09895 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) J3K87_09895 PF04073 Aminoacyl-tRNA editing domain J3K87_09905 PF04542 Sigma-70 region 2 J3K87_09905 PF08281 Sigma-70, region 4 J3K87_09910 PF00174 Oxidoreductase molybdopterin binding domain J3K87_09915 PF01794 Ferric reductase like transmembrane component J3K87_09920 PF04545 Sigma-70, region 4 J3K87_09920 PF00140 Sigma-70 factor, region 1.2 J3K87_09920 PF04542 Sigma-70 region 2 J3K87_09925 PF07690 Major Facilitator Superfamily J3K87_09945 PF03590 Aspartate-ammonia ligase J3K87_09950 PF13404 AsnC-type helix-turn-helix domain J3K87_09950 PF01037 Lrp/AsnC ligand binding domain J3K87_09955 PF01048 Phosphorylase superfamily J3K87_09960 PF04345 Chorismate lyase J3K87_09965 PF01177 Asp/Glu/Hydantoin racemase J3K87_09995 PF01077 Nitrite and sulphite reductase 4Fe-4S domain J3K87_09995 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain J3K87_10000 PF00667 FAD binding domain J3K87_10000 PF00258 Flavodoxin J3K87_10000 PF00175 Oxidoreductase NAD-binding domain J3K87_10005 PF00009 Elongation factor Tu GTP binding domain J3K87_10010 PF01507 Phosphoadenosine phosphosulfate reductase family J3K87_10015 PF01507 Phosphoadenosine phosphosulfate reductase family J3K87_10020 PF10414 Sirohaem synthase dimerisation region J3K87_10020 PF14824 Sirohaem biosynthesis protein central J3K87_10020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases J3K87_10030 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_10035 PF00528 Binding-protein-dependent transport system inner membrane component J3K87_10040 PF12857 TOBE-like domain J3K87_10040 PF17850 CysA C-terminal regulatory domain J3K87_10040 PF00005 ABC transporter J3K87_10045 PF01070 FMN-dependent dehydrogenase J3K87_10050 PF02237 Biotin protein ligase C terminal domain J3K87_10050 PF08279 HTH domain J3K87_10050 PF03099 Biotin/lipoate A/B protein ligase family J3K87_10055 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain J3K87_10055 PF01565 FAD binding domain J3K87_10060 PF01389 OmpA-like transmembrane domain J3K87_10060 PF00691 OmpA family J3K87_10065 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain J3K87_10065 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain J3K87_10070 PF04403 Paraquat-inducible protein A J3K87_10075 PF01841 Transglutaminase-like superfamily J3K87_10085 PF00403 Heavy-metal-associated domain J3K87_10090 PF00465 Iron-containing alcohol dehydrogenase J3K87_10095 PF03466 LysR substrate binding domain J3K87_10095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family J3K87_10100 PF00132 Bacterial transferase hexapeptide (six repeats) J3K87_10100 PF14602 Hexapeptide repeat of succinyl-transferase J3K87_10100 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal J3K87_10105 PF01220 Dehydroquinase class II J3K87_10110 PF04488 Glycosyltransferase sugar-binding region containing DXD motif J3K87_10115 PF00364 Biotin-requiring enzyme J3K87_10120 PF00289 Biotin carboxylase, N-terminal domain J3K87_10120 PF02785 Biotin carboxylase C-terminal domain J3K87_10120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3K87_10125 PF12804 MobA-like NTP transferase domain J3K87_10130 PF06288 Protein of unknown function (DUF1040) J3K87_10135 PF01323 DSBA-like thioredoxin domain J3K87_10145 PF05036 Sporulation related domain J3K87_10145 PF05036 Sporulation related domain J3K87_10150 PF04445 Putative SAM-dependent methyltransferase J3K87_10155 PF02557 D-alanyl-D-alanine carboxypeptidase J3K87_10160 PF07687 Peptidase dimerisation domain J3K87_10160 PF01546 Peptidase family M20/M25/M40 J3K87_10165 PF03960 ArsC family J3K87_10175 PF00809 Pterin binding enzyme J3K87_10180 PF00849 RNA pseudouridylate synthase J3K87_10180 PF01479 S4 domain J3K87_10190 PF05552 Conserved TM helix J3K87_10190 PF00924 Mechanosensitive ion channel J3K87_10195 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain J3K87_10195 PF00289 Biotin carboxylase, N-terminal domain J3K87_10195 PF02785 Biotin carboxylase C-terminal domain J3K87_10205 PF00675 Insulinase (Peptidase family M16) J3K87_10205 PF05193 Peptidase M16 inactive domain J3K87_10205 PF16187 Middle or third domain of peptidase_M16 J3K87_10210 PF17946 RecC C-terminal domain J3K87_10235 PF07977 FabA-like domain J3K87_10240 PF13654 AAA domain J3K87_10240 PF05362 Lon protease (S16) C-terminal proteolytic domain J3K87_10245 PF17414 MatP C-terminal ribbon-helix-helix domain J3K87_10245 PF06303 MatP N-terminal domain J3K87_10250 PF00579 tRNA synthetases class I (W and Y) J3K87_10255 PF13419 Haloacid dehalogenase-like hydrolase J3K87_10265 PF01790 Prolipoprotein diacylglyceryl transferase J3K87_10270 PF01925 Sulfite exporter TauE/SafE J3K87_10275 PF00293 NUDIX domain J3K87_10285 PF00719 Inorganic pyrophosphatase J3K87_10290 PF05175 Methyltransferase small domain J3K87_10295 PF03737 Aldolase/RraA J3K87_10300 PF01226 Formate/nitrite transporter J3K87_10320 PF00226 DnaJ domain J3K87_10320 PF01556 DnaJ C terminal domain J3K87_10320 PF00684 DnaJ central domain J3K87_10325 PF00012 Hsp70 protein J3K87_10330 PF02782 FGGY family of carbohydrate kinases, C-terminal domain J3K87_10330 PF00370 FGGY family of carbohydrate kinases, N-terminal domain J3K87_10340 PF13407 Periplasmic binding protein domain J3K87_10345 PF00005 ABC transporter J3K87_10350 PF02653 Branched-chain amino acid transport system / permease component J3K87_10355 PF12833 Helix-turn-helix domain J3K87_10360 PF01431 Peptidase family M13 J3K87_10360 PF05649 Peptidase family M13 J3K87_10365 PF10571 Uncharacterised protein family UPF0547 J3K87_10370 PF00474 Sodium:solute symporter family J3K87_10375 PF06196 Protein of unknown function (DUF997) J3K87_10380 PF01340 Met Apo-repressor, MetJ J3K87_10385 PF04333 MlaA lipoprotein J3K87_10390 PF01263 Aldose 1-epimerase J3K87_10405 PF14883 Hypothetical glycosyl hydrolase family 13 J3K87_10405 PF01522 Polysaccharide deacetylase J3K87_10410 PF00535 Glycosyl transferase family 2 J3K87_10420 PF00121 Triosephosphate isomerase J3K87_10425 PF01142 tRNA pseudouridine synthase D (TruD) J3K87_10430 PF01975 Survival protein SurE J3K87_10435 PF09335 SNARE associated Golgi protein J3K87_10450 PF01476 LysM domain J3K87_10450 PF01551 Peptidase family M23 J3K87_10455 PF03352 Methyladenine glycosylase J3K87_10465 PF07670 Nucleoside recognition J3K87_10470 PF07670 Nucleoside recognition J3K87_10475 PF00762 Ferrochelatase J3K87_10480 PF00468 Ribosomal protein L34 J3K87_10485 PF00825 Ribonuclease P J3K87_10490 PF01809 Putative membrane protein insertion efficiency factor J3K87_10495 PF00120 Glutamine synthetase, catalytic domain J3K87_10495 PF03951 Glutamine synthetase, beta-Grasp domain J3K87_10500 PF00149 Calcineurin-like phosphoesterase J3K87_10505 PF00293 NUDIX domain J3K87_10510 PF06146 Phosphate-starvation-inducible E J3K87_10515 PF01648 4'-phosphopantetheinyl transferase superfamily J3K87_10520 PF00892 EamA-like transporter family J3K87_10525 PF06965 Na+/H+ antiporter 1 J3K87_10535 PF02580 D-Tyr-tRNA(Tyr) deacylase J3K87_10540 PF03631 Virulence factor BrkB J3K87_10545 PF00171 Aldehyde dehydrogenase family J3K87_10555 PF00593 TonB dependent receptor J3K87_10555 PF07715 TonB-dependent Receptor Plug Domain J3K87_10570 PF00593 TonB dependent receptor J3K87_10570 PF04886 PT repeat J3K87_10570 PF07715 TonB-dependent Receptor Plug Domain J3K87_10585 PF01119 DNA mismatch repair protein, C-terminal domain J3K87_10585 PF08676 MutL C terminal dimerisation domain J3K87_10590 PF08240 Alcohol dehydrogenase GroES-like domain J3K87_10590 PF00107 Zinc-binding dehydrogenase J3K87_10600 PF17209 Hfq protein J3K87_10605 PF16360 GTP-binding GTPase Middle Region J3K87_10605 PF13167 GTP-binding GTPase N-terminal J3K87_10605 PF01926 50S ribosome-binding GTPase J3K87_10610 PF03641 Possible lysine decarboxylase J3K87_10615 PF03819 MazG nucleotide pyrophosphohydrolase domain J3K87_10620 PF13545 Crp-like helix-turn-helix domain J3K87_10620 PF00027 Cyclic nucleotide-binding domain J3K87_10625 PF06794 Uncharacterised protein family (UPF0270) J3K87_10630 PF00440 Bacterial regulatory proteins, tetR family J3K87_10635 PF00692 dUTPase J3K87_10640 PF02441 Flavoprotein J3K87_10640 PF04127 DNA / pantothenate metabolism flavoprotein J3K87_10645 PF04002 RadC-like JAB domain J3K87_10650 PF00830 Ribosomal L28 family J3K87_10655 PF00471 Ribosomal protein L33 J3K87_10670 PF00202 Aminotransferase class-III J3K87_10675 PF00282 Pyridoxal-dependent decarboxylase conserved domain J3K87_10680 PF01206 Sulfurtransferase TusA J3K87_10685 PF04143 Sulphur transport J3K87_10690 PF04219 Protein of unknown function, DUF J3K87_10695 PF05958 tRNA (Uracil-5-)-methyltransferase J3K87_10710 PF01544 CorA-like Mg2+ transporter protein J3K87_10715 PF01209 ubiE/COQ5 methyltransferase family J3K87_10725 PF03109 ABC1 family J3K87_10730 PF02416 mttA/Hcf106 family J3K87_10740 PF00902 Sec-independent protein translocase protein (TatC) J3K87_10745 PF00490 Delta-aminolevulinic acid dehydratase J3K87_10755 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain J3K87_10755 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain J3K87_10755 PF06827 Zinc finger found in FPG and IleRS J3K87_10760 PF05525 Branched-chain amino acid transport protein J3K87_10770 PF00698 Acyl transferase domain J3K87_10775 PF02677 Epoxyqueuosine reductase QueH J3K87_10780 PF00348 Polyprenyl synthetase J3K87_10790 PF03358 NADPH-dependent FMN reductase J3K87_10795 PF07681 DoxX J3K87_10800 PF00829 Ribosomal prokaryotic L21 protein J3K87_10805 PF01016 Ribosomal L27 protein J3K87_10810 PF00892 EamA-like transporter family J3K87_10815 PF04575 Protein of unknown function (DUF560) J3K87_10820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD J3K87_10825 PF00156 Phosphoribosyl transferase domain J3K87_10830 PF08468 Methyltransferase small domain N-terminal J3K87_10830 PF05175 Methyltransferase small domain J3K87_10840 PF00583 Acetyltransferase (GNAT) family J3K87_10845 PF00271 Helicase conserved C-terminal domain J3K87_10845 PF00270 DEAD/DEAH box helicase J3K87_10850 PF01243 Pyridoxamine 5'-phosphate oxidase J3K87_10850 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region J3K87_10855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle J3K87_10860 PF00171 Aldehyde dehydrogenase family J3K87_10865 PF01184 GPR1/FUN34/yaaH family J3K87_10870 PF00005 ABC transporter J3K87_10880 PF01032 FecCD transport family J3K87_10885 PF07715 TonB-dependent Receptor Plug Domain J3K87_10885 PF00593 TonB dependent receptor J3K87_10895 PF01259 SAICAR synthetase J3K87_10900 PF01634 ATP phosphoribosyltransferase J3K87_10900 PF08029 HisG, C-terminal domain J3K87_10905 PF00815 Histidinol dehydrogenase J3K87_10910 PF00155 Aminotransferase class I and II J3K87_10920 PF00475 Imidazoleglycerol-phosphate dehydratase J3K87_10930 PF00117 Glutamine amidotransferase class-I J3K87_10935 PF00977 Histidine biosynthesis protein J3K87_10940 PF00977 Histidine biosynthesis protein J3K87_10945 PF01502 Phosphoribosyl-AMP cyclohydrolase J3K87_10945 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase J3K87_10950 PF02592 Putative vitamin uptake transporter J3K87_10955 PF00557 Metallopeptidase family M24 J3K87_10965 PF13407 Periplasmic binding protein domain J3K87_10965 PF00356 Bacterial regulatory proteins, lacI family J3K87_10970 PF08244 Glycosyl hydrolases family 32 C terminal J3K87_10970 PF00251 Glycosyl hydrolases family 32 N-terminal domain J3K87_10975 PF00294 pfkB family carbohydrate kinase J3K87_10980 PF07732 Multicopper oxidase J3K87_10985 PF02687 FtsX-like permease family J3K87_10985 PF12704 MacB-like periplasmic core domain J3K87_10990 PF00005 ABC transporter J3K87_10995 PF12704 MacB-like periplasmic core domain J3K87_10995 PF02687 FtsX-like permease family J3K87_11000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain J3K87_11000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain J3K87_11005 PF00793 DAHP synthetase I family J3K87_11010 PF13369 Transglutaminase-like superfamily J3K87_11015 PF13847 Methyltransferase domain J3K87_11015 PF17827 PrmC N-terminal domain J3K87_11025 PF03462 PCRF domain J3K87_11025 PF00472 RF-1 domain J3K87_11030 PF01051 Initiator Replication protein J3K87_11050 PF07690 Major Facilitator Superfamily J3K87_11060 PF01051 Initiator Replication protein J3K87_11080 PF07690 Major Facilitator Superfamily