locus-tag class description D1104_00005 PF00308 Bacterial dnaA protein D1104_00005 PF08299 Bacterial dnaA protein helix-turn-helix D1104_00005 PF11638 DnaA N-terminal domain D1104_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D1104_00010 PF02767 DNA polymerase III beta subunit, central domain D1104_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D1104_00015 PF02463 RecF/RecN/SMC N terminal domain D1104_00020 PF00080 Copper/zinc superoxide dismutase (SODC) D1104_00025 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1104_00025 PF02774 Semialdehyde dehydrogenase, dimerisation domain D1104_00035 PF02684 Lipid-A-disaccharide synthetase D1104_00040 PF01343 Peptidase family S49 D1104_00040 PF08496 Peptidase family S49 N-terminal D1104_00045 PF02381 MraZ protein, putative antitoxin-like D1104_00050 PF01795 MraW methylase family D1104_00055 PF04999 Cell division protein FtsL D1104_00060 PF00905 Penicillin binding protein transpeptidase domain D1104_00060 PF03717 Penicillin-binding Protein dimerisation domain D1104_00065 PF01225 Mur ligase family, catalytic domain D1104_00065 PF02875 Mur ligase family, glutamate ligase domain D1104_00065 PF08245 Mur ligase middle domain D1104_00070 PF01225 Mur ligase family, catalytic domain D1104_00070 PF02875 Mur ligase family, glutamate ligase domain D1104_00070 PF08245 Mur ligase middle domain D1104_00075 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D1104_00075 PF00953 Glycosyl transferase family 4 D1104_00080 PF02875 Mur ligase family, glutamate ligase domain D1104_00080 PF08245 Mur ligase middle domain D1104_00085 PF01098 Cell cycle protein D1104_00090 PF04101 Glycosyltransferase family 28 C-terminal domain D1104_00090 PF03033 Glycosyltransferase family 28 N-terminal domain D1104_00095 PF02875 Mur ligase family, glutamate ligase domain D1104_00095 PF08245 Mur ligase middle domain D1104_00095 PF01225 Mur ligase family, catalytic domain D1104_00100 PF01820 D-ala D-ala ligase N-terminus D1104_00100 PF07478 D-ala D-ala ligase C-terminus D1104_00105 PF03799 Cell division protein FtsQ D1104_00105 PF08478 POTRA domain, FtsQ-type D1104_00110 PF02491 SHS2 domain inserted in FTSA D1104_00115 PF12327 FtsZ family, C-terminal domain D1104_00115 PF00091 Tubulin/FtsZ family, GTPase domain D1104_00120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D1104_00125 PF02463 RecF/RecN/SMC N terminal domain D1104_00130 PF00005 ABC transporter D1104_00130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1104_00135 PF00528 Binding-protein-dependent transport system inner membrane component D1104_00135 PF12911 N-terminal TM domain of oligopeptide transport permease C D1104_00140 PF00528 Binding-protein-dependent transport system inner membrane component D1104_00145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1104_00150 PF16658 Class II release factor RF3, C-terminal domain D1104_00150 PF00009 Elongation factor Tu GTP binding domain D1104_00150 PF03144 Elongation factor Tu domain 2 D1104_00165 PF01195 Peptidyl-tRNA hydrolase D1104_00170 PF01926 50S ribosome-binding GTPase D1104_00170 PF06071 Protein of unknown function (DUF933) D1104_00185 PF05433 Glycine zipper 2TM domain D1104_00190 PF06185 YecM protein D1104_00195 PF05746 DALR anticodon binding domain D1104_00195 PF03485 Arginyl tRNA synthetase N terminal domain D1104_00195 PF00750 tRNA synthetases class I (R) D1104_00200 PF01018 GTP1/OBG D1104_00200 PF01926 50S ribosome-binding GTPase D1104_00205 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) D1104_00210 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1104_00210 PF00588 SpoU rRNA Methylase family D1104_00215 PF13091 PLD-like domain D1104_00220 PF08264 Anticodon-binding domain of tRNA D1104_00220 PF06827 Zinc finger found in FPG and IleRS D1104_00220 PF00133 tRNA synthetases class I (I, L, M and V) D1104_00225 PF01687 Riboflavin kinase D1104_00225 PF06574 FAD synthetase D1104_00230 PF13521 AAA domain D1104_00230 PF01467 Cytidylyltransferase-like D1104_00235 PF00149 Calcineurin-like phosphoesterase D1104_00240 PF00072 Response regulator receiver domain D1104_00240 PF00486 Transcriptional regulatory protein, C terminal D1104_00255 PF01168 Alanine racemase, N-terminal domain D1104_00265 PF00679 Elongation factor G C-terminus D1104_00265 PF00009 Elongation factor Tu GTP binding domain D1104_00265 PF03144 Elongation factor Tu domain 2 D1104_00270 PF00462 Glutaredoxin D1104_00275 PF03725 3' exoribonuclease family, domain 2 D1104_00275 PF01138 3' exoribonuclease family, domain 1 D1104_00280 PF08340 Domain of unknown function (DUF1732) D1104_00280 PF03755 YicC-like family, N-terminal region D1104_00285 PF01571 Aminomethyltransferase folate-binding domain D1104_00290 PF00037 4Fe-4S binding domain D1104_00295 PF00072 Response regulator receiver domain D1104_00295 PF00196 Bacterial regulatory proteins, luxR family D1104_00300 PF10672 S-adenosylmethionine-dependent methyltransferase D1104_00300 PF02926 THUMP domain D1104_00300 PF01170 Putative RNA methylase family UPF0020 D1104_00305 PF00588 SpoU rRNA Methylase family D1104_00310 PF00923 Transaldolase/Fructose-6-phosphate aldolase D1104_00340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1104_00345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1104_00350 PF00528 Binding-protein-dependent transport system inner membrane component D1104_00355 PF12911 N-terminal TM domain of oligopeptide transport permease C D1104_00355 PF00528 Binding-protein-dependent transport system inner membrane component D1104_00360 PF00005 ABC transporter D1104_00360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1104_00365 PF00005 ABC transporter D1104_00365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1104_00370 PF06146 Phosphate-starvation-inducible E D1104_00380 PF01042 Endoribonuclease L-PSP D1104_00385 PF01063 Amino-transferase class IV D1104_00390 PF00462 Glutaredoxin D1104_00395 PF13662 Toprim domain D1104_00395 PF02132 RecR protein D1104_00400 PF02575 YbaB/EbfC DNA-binding family D1104_00405 PF03544 Gram-negative bacterial TonB protein C-terminal D1104_00410 PF02472 Biopolymer transport protein ExbD/TolR D1104_00415 PF01618 MotA/TolQ/ExbB proton channel family D1104_00420 PF00581 Rhodanese-like domain D1104_00430 PF03610 PTS system fructose IIA component D1104_00430 PF05524 PEP-utilising enzyme, N-terminal D1104_00430 PF00391 PEP-utilising enzyme, mobile domain D1104_00430 PF00381 PTS HPr component phosphorylation site D1104_00435 PF02734 DAK2 domain D1104_00440 PF02733 Dak1 domain D1104_00445 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1104_00450 PF02348 Cytidylyltransferase D1104_00455 PF06078 Bacterial protein of unknown function (DUF937) D1104_00460 PF09297 NADH pyrophosphatase zinc ribbon domain D1104_00460 PF00293 NUDIX domain D1104_00465 PF00849 RNA pseudouridylate synthase D1104_00475 PF04186 FxsA cytoplasmic membrane protein D1104_00480 PF00557 Metallopeptidase family M24 D1104_00485 PF01206 Sulfurtransferase TusA D1104_00490 PF06877 Regulator of ribonuclease activity B D1104_00495 PF01926 50S ribosome-binding GTPase D1104_00505 PF02535 ZIP Zinc transporter D1104_00510 PF00920 Dehydratase family D1104_00520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1104_00520 PF00205 Thiamine pyrophosphate enzyme, central domain D1104_00520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1104_00525 PF02335 Cytochrome c552 D1104_00535 PF13247 4Fe-4S dicluster domain D1104_00540 PF03916 Polysulphide reductase, NrfD D1104_00580 PF13018 Extended Signal Peptide of Type V secretion system D1104_00580 PF05662 Coiled stalk of trimeric autotransporter adhesin D1104_00580 PF05662 Coiled stalk of trimeric autotransporter adhesin D1104_00580 PF03895 YadA-like membrane anchor domain D1104_00580 PF05658 Head domain of trimeric autotransporter adhesin D1104_00580 PF05658 Head domain of trimeric autotransporter adhesin D1104_00580 PF13018 Extended Signal Peptide of Type V secretion system D1104_00580 PF13018 Extended Signal Peptide of Type V secretion system D1104_00580 PF03895 YadA-like membrane anchor domain D1104_00580 PF03895 YadA-like membrane anchor domain D1104_00580 PF05658 Head domain of trimeric autotransporter adhesin D1104_00580 PF05662 Coiled stalk of trimeric autotransporter adhesin D1104_00585 PF00860 Permease family D1104_00590 PF00171 Aldehyde dehydrogenase family D1104_00590 PF01619 Proline dehydrogenase D1104_00590 PF14850 DNA-binding domain of Proline dehydrogenase D1104_00590 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D1104_00595 PF00474 Sodium:solute symporter family D1104_00600 PF01614 Bacterial transcriptional regulator D1104_00600 PF09339 IclR helix-turn-helix domain D1104_00605 PF01812 5-formyltetrahydrofolate cyclo-ligase family D1104_00615 PF05164 Cell division protein ZapA D1104_00620 PF03695 Uncharacterised protein family (UPF0149) D1104_00625 PF01208 Uroporphyrinogen decarboxylase (URO-D) D1104_00630 PF04222 Protein of unknown function (DUF416) D1104_00635 PF00216 Bacterial DNA-binding protein D1104_00640 PF00303 Thymidylate synthase D1104_00650 PF04055 Radical SAM superfamily D1104_00650 PF06968 Biotin and Thiamin Synthesis associated domain D1104_00655 PF00313 'Cold-shock' DNA-binding domain D1104_00660 PF04352 ProQ/FINO family D1104_00665 PF11818 C-terminal domain of tail specific protease (DUF3340) D1104_00665 PF00595 PDZ domain D1104_00665 PF03572 Peptidase family S41 D1104_00665 PF17804 Tail specific protease N-terminal domain D1104_00670 PF03734 L,D-transpeptidase catalytic domain D1104_00675 PF05951 Bacterial protein of unknown function (DUF882) D1104_00680 PF00753 Metallo-beta-lactamase superfamily D1104_00695 PF01230 HIT domain D1104_00700 PF00950 ABC 3 transport family D1104_00705 PF00950 ABC 3 transport family D1104_00710 PF01351 Ribonuclease HII D1104_00715 PF03193 RsgA GTPase D1104_00720 PF03466 LysR substrate binding domain D1104_00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_00725 PF13419 Haloacid dehalogenase-like hydrolase D1104_00730 PF03466 LysR substrate binding domain D1104_00730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_00740 PF00710 Asparaginase, N-terminal D1104_00740 PF17763 Glutaminase/Asparaginase C-terminal domain D1104_00745 PF06418 CTP synthase N-terminus D1104_00745 PF00117 Glutamine amidotransferase class-I D1104_00750 PF10063 Uncharacterized integral membrane protein (DUF2301) D1104_00755 PF00694 Aconitase C-terminal domain D1104_00760 PF00330 Aconitase family (aconitate hydratase) D1104_00765 PF13556 PucR C-terminal helix-turn-helix domain D1104_00765 PF17853 GGDEF-like domain D1104_00765 PF05651 Putative sugar diacid recognition D1104_00770 PF02447 GntP family permease D1104_00775 PF02595 Glycerate kinase family D1104_00780 PF00708 Acylphosphatase D1104_00785 PF11398 Protein of unknown function (DUF2813) D1104_00790 PF11892 Domain of unknown function (DUF3412) D1104_00790 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases D1104_00790 PF03641 Possible lysine decarboxylase D1104_00795 PF01207 Dihydrouridine synthase (Dus) D1104_00805 PF03477 ATP cone domain D1104_00805 PF02867 Ribonucleotide reductase, barrel domain D1104_00805 PF00317 Ribonucleotide reductase, all-alpha domain D1104_00810 PF01521 Iron-sulphur cluster biosynthesis D1104_00810 PF01106 NifU-like domain D1104_00815 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) D1104_00815 PF11973 NQRA C-terminal domain D1104_00820 PF03116 NQR2, RnfD, RnfE family D1104_00825 PF04205 FMN-binding domain D1104_00830 PF02508 Rnf-Nqr subunit, membrane protein D1104_00835 PF02508 Rnf-Nqr subunit, membrane protein D1104_00840 PF00970 Oxidoreductase FAD-binding domain D1104_00840 PF00111 2Fe-2S iron-sulfur cluster binding domain D1104_00840 PF00175 Oxidoreductase NAD-binding domain D1104_00845 PF02424 ApbE family D1104_00850 PF04400 (Na+)-NQR maturation NqrM D1104_00860 PF12832 MFS_1 like family D1104_00865 PF14748 Pyrroline-5-carboxylate reductase dimerisation D1104_00865 PF03807 NADP oxidoreductase coenzyme F420-dependent D1104_00870 PF04381 Putative exonuclease, RdgC D1104_00875 PF13419 Haloacid dehalogenase-like hydrolase D1104_00890 PF02508 Rnf-Nqr subunit, membrane protein D1104_00895 PF04060 Putative Fe-S cluster D1104_00900 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D1104_00900 PF12838 4Fe-4S dicluster domain D1104_00900 PF13375 RnfC Barrel sandwich hybrid domain D1104_00905 PF03458 UPF0126 domain D1104_00910 PF03116 NQR2, RnfD, RnfE family D1104_00915 PF04205 FMN-binding domain D1104_00920 PF02508 Rnf-Nqr subunit, membrane protein D1104_00925 PF03279 Bacterial lipid A biosynthesis acyltransferase D1104_00940 PF01258 Prokaryotic dksA/traR C4-type zinc finger D1104_00945 PF01743 Poly A polymerase head domain D1104_00945 PF12626 Polymerase A arginine-rich C-terminus D1104_00945 PF12627 Probable RNA and SrmB- binding site of polymerase A D1104_00950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D1104_00960 PF11739 Dicarboxylate transport D1104_00970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1104_00975 PF00929 Exonuclease D1104_00985 PF01817 Chorismate mutase type II D1104_00985 PF02153 Prephenate dehydrogenase D1104_00990 PF00793 DAHP synthetase I family D1104_00995 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1104_01000 PF00224 Pyruvate kinase, barrel domain D1104_01000 PF02887 Pyruvate kinase, alpha/beta domain D1104_01005 PF00300 Histidine phosphatase superfamily (branch 1) D1104_01010 PF01207 Dihydrouridine synthase (Dus) D1104_01015 PF02954 Bacterial regulatory protein, Fis family D1104_01020 PF00209 Sodium:neurotransmitter symporter family D1104_01025 PF02086 D12 class N6 adenine-specific DNA methyltransferase D1104_01030 PF01761 3-dehydroquinate synthase D1104_01035 PF01202 Shikimate kinase D1104_01040 PF17092 Penicillin-binding protein OB-like domain D1104_01040 PF00912 Transglycosylase D1104_01040 PF00905 Penicillin binding protein transpeptidase domain D1104_01045 PF11104 Type IV pilus assembly protein PilM; D1104_01065 PF03958 Bacterial type II/III secretion system short domain D1104_01065 PF00263 Bacterial type II and III secretion system protein D1104_01070 PF01029 NusB family D1104_01075 PF00586 AIR synthase related protein, N-terminal domain D1104_01075 PF02769 AIR synthase related protein, C-terminal domain D1104_01080 PF04608 Phosphatidylglycerophosphatase A D1104_01085 PF01810 LysE type translocator D1104_01090 PF00588 SpoU rRNA Methylase family D1104_01090 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1104_01095 PF00459 Inositol monophosphatase family D1104_01100 PF02780 Transketolase, C-terminal domain D1104_01100 PF02779 Transketolase, pyrimidine binding domain D1104_01100 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D1104_01110 PF00464 Serine hydroxymethyltransferase D1104_01115 PF01513 ATP-NAD kinase D1104_01120 PF18019 HD domain D1104_01125 PF01867 CRISPR associated protein Cas1 D1104_01135 PF09615 CRISPR-associated protein (Cas_Csy3) D1104_01140 PF09614 CRISPR-associated protein (Cas_Csy2) D1104_01150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1104_01150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1104_01150 PF02824 TGS domain D1104_01150 PF03129 Anticodon binding domain D1104_01165 PF03783 Curli production assembly/transport component CsgG D1104_01175 PF05643 Putative bacterial lipoprotein (DUF799) D1104_01180 PF00707 Translation initiation factor IF-3, C-terminal domain D1104_01180 PF05198 Translation initiation factor IF-3, N-terminal domain D1104_01185 PF01632 Ribosomal protein L35 D1104_01190 PF00453 Ribosomal protein L20 D1104_01210 PF01595 Cyclin M transmembrane N-terminal domain D1104_01210 PF03471 Transporter associated domain D1104_01210 PF00571 CBS domain D1104_01215 PF00849 RNA pseudouridylate synthase D1104_01220 PF00300 Histidine phosphatase superfamily (branch 1) D1104_01225 PF03652 Holliday junction resolvase D1104_01230 PF02622 Uncharacterized ACR, COG1678 D1104_01235 PF04452 RNA methyltransferase D1104_01245 PF01722 BolA-like protein D1104_01270 PF07516 SecA Wing and Scaffold domain D1104_01270 PF01043 SecA preprotein cross-linking domain D1104_01270 PF02810 SEC-C motif D1104_01270 PF07517 SecA DEAD-like domain D1104_01280 PF00293 NUDIX domain D1104_01285 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1104_01290 PF00696 Amino acid kinase family D1104_01295 PF00202 Aminotransferase class-III D1104_01300 PF17484 N-Lobe handle Tf-binding protein B D1104_01300 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1104_01300 PF17483 C-lobe handle domain of Tf-binding protein B D1104_01310 PF07498 Rho termination factor, N-terminal domain D1104_01310 PF07497 Rho termination factor, RNA-binding domain D1104_01310 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1104_01315 PF00291 Pyridoxal-phosphate dependent enzyme D1104_01320 PF08544 GHMP kinases C terminal D1104_01320 PF00288 GHMP kinases N terminal domain D1104_01325 PF00696 Amino acid kinase family D1104_01325 PF01842 ACT domain D1104_01325 PF13840 ACT domain D1104_01325 PF00742 Homoserine dehydrogenase D1104_01325 PF03447 Homoserine dehydrogenase, NAD binding domain D1104_01330 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D1104_01330 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D1104_01335 PF00842 Alanine racemase, C-terminal domain D1104_01335 PF01168 Alanine racemase, N-terminal domain D1104_01340 PF13538 UvrD-like helicase C-terminal domain D1104_01370 PF07687 Peptidase dimerisation domain D1104_01370 PF01546 Peptidase family M20/M25/M40 D1104_01375 PF00156 Phosphoribosyl transferase domain D1104_01380 PF00625 Guanylate kinase D1104_01385 PF02321 Outer membrane efflux protein D1104_01390 PF03658 RnfH family Ubiquitin D1104_01395 PF03364 Polyketide cyclase / dehydrase and lipid transport D1104_01400 PF00005 ABC transporter D1104_01400 PF03459 TOBE domain D1104_01405 PF00528 Binding-protein-dependent transport system inner membrane component D1104_01415 PF01061 ABC-2 type transporter D1104_01420 PF00005 ABC transporter D1104_01425 PF12169 DNA polymerase III subunits gamma and tau domain III D1104_01425 PF12170 DNA polymerase III tau subunit V interacting with alpha D1104_01430 PF00156 Phosphoribosyl transferase domain D1104_01440 PF01042 Endoribonuclease L-PSP D1104_01445 PF00291 Pyridoxal-phosphate dependent enzyme D1104_01450 PF04073 Aminoacyl-tRNA editing domain D1104_01455 PF00005 ABC transporter D1104_01460 PF01297 Zinc-uptake complex component A periplasmic D1104_01465 PF04358 DsrC like protein D1104_01470 PF01027 Inhibitor of apoptosis-promoting Bax1 D1104_01475 PF01066 CDP-alcohol phosphatidyltransferase D1104_01485 PF01541 GIY-YIG catalytic domain D1104_01485 PF02151 UvrB/uvrC motif D1104_01485 PF08459 UvrC Helix-hairpin-helix N-terminal D1104_01490 PF01026 TatD related DNase D1104_01495 PF00580 UvrD/REP helicase N-terminal domain D1104_01495 PF13361 UvrD-like helicase C-terminal domain D1104_01500 PF00005 ABC transporter D1104_01500 PF08402 TOBE domain D1104_01505 PF00528 Binding-protein-dependent transport system inner membrane component D1104_01510 PF00528 Binding-protein-dependent transport system inner membrane component D1104_01515 PF07499 RuvA, C-terminal domain D1104_01515 PF01330 RuvA N terminal domain D1104_01520 PF17864 RuvB AAA lid domain D1104_01520 PF05496 Holliday junction DNA helicase RuvB P-loop domain D1104_01520 PF05491 RuvB C-terminal winged helix domain D1104_01530 PF00521 DNA gyrase/topoisomerase IV, subunit A D1104_01530 PF03989 DNA gyrase C-terminal domain, beta-propeller D1104_01535 PF02384 N-6 DNA Methylase D1104_01535 PF12161 HsdM N-terminal domain D1104_01545 PF01420 Type I restriction modification DNA specificity domain D1104_01555 PF12008 Type I restriction and modification enzyme - subunit R C terminal D1104_01555 PF18766 SWI2/SNF2 ATPase D1104_01555 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D1104_01560 PF00005 ABC transporter D1104_01560 PF16326 ABC transporter C-terminal domain D1104_01560 PF12848 ABC transporter D1104_01565 PF00899 ThiF family D1104_01570 PF17274 Family of unknown function (DUF5339) D1104_01575 PF01654 Cytochrome bd terminal oxidase subunit I D1104_01580 PF02322 Cytochrome bd terminal oxidase subunit II D1104_01595 PF03061 Thioesterase superfamily D1104_01600 PF01618 MotA/TolQ/ExbB proton channel family D1104_01605 PF02472 Biopolymer transport protein ExbD/TolR D1104_01610 PF06519 TolA C-terminal D1104_01610 PF06519 TolA C-terminal D1104_01615 PF04052 TolB amino-terminal domain D1104_01615 PF07676 WD40-like Beta Propeller Repeat D1104_01620 PF00691 OmpA family D1104_01630 PF00226 DnaJ domain D1104_01630 PF05099 Tellurite resistance protein TerB D1104_01635 PF01207 Dihydrouridine synthase (Dus) D1104_01640 PF05128 Domain of unknown function (DUF697) D1104_01645 PF00005 ABC transporter D1104_01645 PF12848 ABC transporter D1104_01655 PF00994 Probable molybdopterin binding domain D1104_01655 PF03454 MoeA C-terminal region (domain IV) D1104_01655 PF03453 MoeA N-terminal region (domain I and II) D1104_01660 PF00899 ThiF family D1104_01670 PF01938 TRAM domain D1104_01670 PF05958 tRNA (Uracil-5-)-methyltransferase D1104_01675 PF13286 Phosphohydrolase-associated domain D1104_01675 PF01966 HD domain D1104_01680 PF18339 RapA N-terminal Tudor like domain 1 D1104_01680 PF18337 RapA N-terminal Tudor like domain D1104_01680 PF12137 RNA polymerase recycling family C-terminal D1104_01680 PF00176 SNF2 family N-terminal domain D1104_01680 PF00271 Helicase conserved C-terminal domain D1104_01685 PF00849 RNA pseudouridylate synthase D1104_01690 PF01510 N-acetylmuramoyl-L-alanine amidase D1104_01695 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D1104_01700 PF00156 Phosphoribosyl transferase domain D1104_01705 PF01717 Cobalamin-independent synthase, Catalytic domain D1104_01710 PF01053 Cys/Met metabolism PLP-dependent enzyme D1104_01715 PF02600 Disulfide bond formation protein DsbB D1104_01720 PF06450 Bacterial Na+/H+ antiporter B (NhaB) D1104_01725 PF00392 Bacterial regulatory proteins, gntR family D1104_01725 PF07840 FadR C-terminal domain D1104_01730 PF02562 PhoH-like protein D1104_01765 PF02146 Sir2 family D1104_01790 PF00293 NUDIX domain D1104_01795 PF01494 FAD binding domain D1104_01815 PF01494 FAD binding domain D1104_01820 PF03668 P-loop ATPase protein family D1104_01825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1104_01830 PF12399 Branched-chain amino acid ATP-binding cassette transporter D1104_01830 PF00005 ABC transporter D1104_01835 PF03968 OstA-like protein D1104_01845 PF00311 Phosphoenolpyruvate carboxylase D1104_01850 PF04536 TPM domain D1104_01860 PF04011 LemA family D1104_01870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D1104_01875 PF00294 pfkB family carbohydrate kinase D1104_01880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1104_01880 PF00381 PTS HPr component phosphorylation site D1104_01885 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D1104_01885 PF02806 Alpha amylase, C-terminal all-beta domain D1104_01885 PF00128 Alpha amylase, catalytic domain D1104_01890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D1104_01890 PF00128 Alpha amylase, catalytic domain D1104_01890 PF18390 Glycogen debranching enzyme C-terminal domain D1104_01895 PF00483 Nucleotidyl transferase D1104_01900 PF08323 Starch synthase catalytic domain D1104_01900 PF00534 Glycosyl transferases group 1 D1104_01905 PF00343 Carbohydrate phosphorylase D1104_01915 PF00334 Nucleoside diphosphate kinase D1104_01920 PF09334 tRNA synthetases class I (M) D1104_01920 PF01588 Putative tRNA binding domain D1104_01920 PF08264 Anticodon-binding domain of tRNA D1104_01925 PF13378 Enolase C-terminal domain-like D1104_01935 PF00849 RNA pseudouridylate synthase D1104_01935 PF01479 S4 domain D1104_01940 PF07690 Major Facilitator Superfamily D1104_01955 PF01261 Xylose isomerase-like TIM barrel D1104_01960 PF00877 NlpC/P60 family D1104_01965 PF00717 Peptidase S24-like D1104_01970 PF01228 Glycine radical D1104_01975 PF03167 Uracil DNA glycosylase superfamily D1104_01980 PF04393 Protein of unknown function (DUF535) D1104_01985 PF03797 Autotransporter beta-domain D1104_01985 PF00082 Subtilase family D1104_01990 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D1104_01990 PF00271 Helicase conserved C-terminal domain D1104_01990 PF04408 Helicase associated domain (HA2) D1104_01990 PF11898 Domain of unknown function (DUF3418) D1104_01990 PF00270 DEAD/DEAH box helicase D1104_01995 PF04284 Protein of unknown function (DUF441) D1104_02000 PF01025 GrpE D1104_02005 PF13416 Bacterial extracellular solute-binding protein D1104_02010 PF01554 MatE D1104_02015 PF00580 UvrD/REP helicase N-terminal domain D1104_02015 PF12705 PD-(D/E)XK nuclease superfamily D1104_02015 PF13361 UvrD-like helicase C-terminal domain D1104_02020 PF00795 Carbon-nitrogen hydrolase D1104_02025 PF00571 CBS domain D1104_02025 PF03471 Transporter associated domain D1104_02030 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D1104_02035 PF00230 Major intrinsic protein D1104_02040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1104_02040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1104_02045 PF05362 Lon protease (S16) C-terminal proteolytic domain D1104_02045 PF02190 ATP-dependent protease La (LON) substrate-binding domain D1104_02045 PF00004 ATPase family associated with various cellular activities (AAA) D1104_02050 PF07690 Major Facilitator Superfamily D1104_02055 PF03009 Glycerophosphoryl diester phosphodiesterase family D1104_02060 PF01266 FAD dependent oxidoreductase D1104_02060 PF04324 BFD-like [2Fe-2S] binding domain D1104_02065 PF00890 FAD binding domain D1104_02070 PF02754 Cysteine-rich domain D1104_02070 PF13183 4Fe-4S dicluster domain D1104_02075 PF01872 RibD C-terminal domain D1104_02075 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1104_02080 PF00677 Lumazine binding domain D1104_02085 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D1104_02085 PF00925 GTP cyclohydrolase II D1104_02090 PF00885 6,7-dimethyl-8-ribityllumazine synthase D1104_02095 PF01272 Transcription elongation factor, GreA/GreB, C-term D1104_02095 PF03449 Transcription elongation factor, N-terminal D1104_02100 PF00571 CBS domain D1104_02100 PF01380 SIS domain D1104_02105 PF12404 Peptidase D1104_02105 PF00883 Cytosol aminopeptidase family, catalytic domain D1104_02110 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) D1104_02115 PF01758 Sodium Bile acid symporter family D1104_02120 PF13533 Biotin-lipoyl like D1104_02130 PF08502 LeuA allosteric (dimerisation) domain D1104_02130 PF00682 HMGL-like D1104_02135 PF04542 Sigma-70 region 2 D1104_02135 PF08281 Sigma-70, region 4 D1104_02140 PF03873 Anti sigma-E protein RseA, C-terminal domain D1104_02140 PF03872 Anti sigma-E protein RseA, N-terminal domain D1104_02150 PF13193 AMP-binding enzyme C-terminal domain D1104_02150 PF00501 AMP-binding enzyme D1104_02160 PF00398 Ribosomal RNA adenine dimethylase D1104_02165 PF09312 SurA N-terminal domain D1104_02165 PF00639 PPIC-type PPIASE domain D1104_02170 PF00156 Phosphoribosyl transferase domain D1104_02175 PF01467 Cytidylyltransferase-like D1104_02175 PF00294 pfkB family carbohydrate kinase D1104_02190 PF01926 50S ribosome-binding GTPase D1104_02190 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D1104_02195 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D1104_02195 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D1104_02195 PF01488 Shikimate / quinate 5-dehydrogenase D1104_02200 PF13291 ACT domain D1104_02200 PF04607 Region found in RelA / SpoT proteins D1104_02200 PF02824 TGS domain D1104_02205 PF13288 DXP reductoisomerase C-terminal domain D1104_02205 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D1104_02205 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D1104_02210 PF00132 Bacterial transferase hexapeptide (six repeats) D1104_02210 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D1104_02215 PF07977 FabA-like domain D1104_02220 PF00132 Bacterial transferase hexapeptide (six repeats) D1104_02220 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D1104_02230 PF01103 Surface antigen D1104_02230 PF07244 Surface antigen variable number repeat D1104_02235 PF02163 Peptidase family M50 D1104_02245 PF01255 Putative undecaprenyl diphosphate synthase D1104_02250 PF16123 Hydroxyacylglutathione hydrolase C-terminus D1104_02250 PF00753 Metallo-beta-lactamase superfamily D1104_02255 PF00480 ROK family D1104_02260 PF01569 PAP2 superfamily D1104_02265 PF01985 CRS1 / YhbY (CRM) domain D1104_02270 PF00535 Glycosyl transferase family 2 D1104_02275 PF00768 D-alanyl-D-alanine carboxypeptidase D1104_02280 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1104_02285 PF00764 Arginosuccinate synthase D1104_02290 PF00075 RNase H D1104_02295 PF02674 Colicin V production protein D1104_02300 PF00156 Phosphoribosyl transferase domain D1104_02310 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D1104_02310 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D1104_02315 PF04355 SmpA / OmlA family D1104_02320 PF04245 37-kD nucleoid-associated bacterial protein D1104_02325 PF01042 Endoribonuclease L-PSP D1104_02330 PF02578 Multi-copper polyphenol oxidoreductase laccase D1104_02340 PF07119 Protein of unknown function (DUF1375) D1104_02345 PF00180 Isocitrate/isopropylmalate dehydrogenase D1104_02350 PF01641 SelR domain D1104_02355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D1104_02355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D1104_02365 PF04085 rod shape-determining protein MreC D1104_02370 PF04093 rod shape-determining protein MreD D1104_02375 PF12002 MgsA AAA+ ATPase C terminal D1104_02375 PF16193 AAA C-terminal domain D1104_02375 PF00004 ATPase family associated with various cellular activities (AAA) D1104_02380 PF00950 ABC 3 transport family D1104_02385 PF13230 Glutamine amidotransferases class-II D1104_02390 PF00561 alpha/beta hydrolase fold D1104_02395 PF02698 DUF218 domain D1104_02420 PF02589 LUD domain D1104_02425 PF11870 Domain of unknown function (DUF3390) D1104_02425 PF13183 4Fe-4S dicluster domain D1104_02425 PF02589 LUD domain D1104_02430 PF02754 Cysteine-rich domain D1104_02435 PF02652 L-lactate permease D1104_02440 PF00816 H-NS histone family D1104_02445 PF03553 Na+/H+ antiporter family D1104_02450 PF13407 Periplasmic binding protein domain D1104_02455 PF00549 CoA-ligase D1104_02455 PF02629 CoA binding domain D1104_02460 PF08442 ATP-grasp domain D1104_02460 PF00549 CoA-ligase D1104_02465 PF04393 Protein of unknown function (DUF535) D1104_02470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1104_02470 PF02817 e3 binding domain D1104_02470 PF00364 Biotin-requiring enzyme D1104_02475 PF16870 2-oxoglutarate dehydrogenase C-terminal D1104_02475 PF00676 Dehydrogenase E1 component D1104_02475 PF16078 2-oxoglutarate dehydrogenase N-terminus D1104_02475 PF02779 Transketolase, pyrimidine binding domain D1104_02480 PF00005 ABC transporter D1104_02485 PF01551 Peptidase family M23 D1104_02485 PF04225 Opacity-associated protein A LysM-like domain D1104_02490 PF13098 Thioredoxin-like domain D1104_02490 PF10411 Disulfide bond isomerase protein N-terminus D1104_02495 PF01368 DHH family D1104_02495 PF02272 DHHA1 domain D1104_02495 PF17768 RecJ OB domain D1104_02500 PF01389 OmpA-like transmembrane domain D1104_02500 PF00691 OmpA family D1104_02510 PF00672 HAMP domain D1104_02510 PF07730 Histidine kinase D1104_02510 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D1104_02510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1104_02520 PF01725 Ham1 family D1104_02525 PF01906 Putative heavy-metal-binding D1104_02530 PF01268 Formate--tetrahydrofolate ligase D1104_02535 PF03692 Putative zinc- or iron-chelating domain D1104_02540 PF00106 short chain dehydrogenase D1104_02545 PF00291 Pyridoxal-phosphate dependent enzyme D1104_02550 PF00290 Tryptophan synthase alpha chain D1104_02555 PF12441 CopG antitoxin of type II toxin-antitoxin system D1104_02565 PF01612 3'-5' exonuclease D1104_02565 PF00476 DNA polymerase family A D1104_02565 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D1104_02565 PF01367 5'-3' exonuclease, C-terminal SAM fold D1104_02575 PF03548 Outer membrane lipoprotein carrier protein LolA D1104_02580 PF01371 Trp repressor protein D1104_02585 PF00912 Transglycosylase D1104_02590 PF02627 Carboxymuconolactone decarboxylase family D1104_02620 PF00881 Nitroreductase family D1104_02625 PF08443 RimK-like ATP-grasp domain D1104_02625 PF18030 RimK PreATP-grasp domain D1104_02630 PF02698 DUF218 domain D1104_02635 PF03949 Malic enzyme, NAD binding domain D1104_02635 PF01515 Phosphate acetyl/butaryl transferase D1104_02635 PF00390 Malic enzyme, N-terminal domain D1104_02640 PF01386 Ribosomal L25p family D1104_02720 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB D1104_02740 PF02463 RecF/RecN/SMC N terminal domain D1104_02745 PF00717 Peptidase S24-like D1104_02775 PF06147 Protein of unknown function (DUF968) D1104_02855 PF00574 Clp protease D1104_02935 PF06226 Protein of unknown function (DUF1007) D1104_02940 PF03824 High-affinity nickel-transport protein D1104_02945 PF01235 Sodium:alanine symporter family D1104_02950 PF00005 ABC transporter D1104_02955 PF00005 ABC transporter D1104_02965 PF00528 Binding-protein-dependent transport system inner membrane component D1104_02970 PF00899 ThiF family D1104_02975 PF05690 Thiazole biosynthesis protein ThiG D1104_02980 PF04055 Radical SAM superfamily D1104_02980 PF06968 Biotin and Thiamin Synthesis associated domain D1104_02985 PF03070 TENA/THI-4/PQQC family D1104_02990 PF09084 NMT1/THI5 like D1104_03000 PF02581 Thiamine monophosphate synthase D1104_03005 PF00679 Elongation factor G C-terminus D1104_03005 PF00009 Elongation factor Tu GTP binding domain D1104_03005 PF03144 Elongation factor Tu domain 2 D1104_03005 PF06421 GTP-binding protein LepA C-terminus D1104_03010 PF10502 Signal peptidase, peptidase S26 D1104_03015 PF14622 Ribonuclease-III-like D1104_03015 PF00035 Double-stranded RNA binding motif D1104_03020 PF07650 KH domain D1104_03020 PF01926 50S ribosome-binding GTPase D1104_03025 PF02565 Recombination protein O C terminal D1104_03025 PF11967 Recombination protein O N terminal D1104_03060 PF00437 Type II/IV secretion system protein D1104_03075 PF00263 Bacterial type II and III secretion system protein D1104_03075 PF03958 Bacterial type II/III secretion system short domain D1104_03095 PF00270 DEAD/DEAH box helicase D1104_03095 PF00271 Helicase conserved C-terminal domain D1104_03105 PF05872 Bacterial protein of unknown function (DUF853) D1104_03115 PF00528 Binding-protein-dependent transport system inner membrane component D1104_03130 PF00318 Ribosomal protein S2 D1104_03135 PF00889 Elongation factor TS D1104_03140 PF00884 Sulfatase D1104_03145 PF00696 Amino acid kinase family D1104_03150 PF01765 Ribosome recycling factor D1104_03155 PF00392 Bacterial regulatory proteins, gntR family D1104_03155 PF00155 Aminotransferase class I and II D1104_03160 PF01680 SOR/SNZ family D1104_03165 PF01174 SNO glutamine amidotransferase family D1104_03170 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1104_03175 PF03880 DbpA RNA binding domain D1104_03175 PF00271 Helicase conserved C-terminal domain D1104_03175 PF00270 DEAD/DEAH box helicase D1104_03185 PF00575 S1 RNA binding domain D1104_03185 PF03725 3' exoribonuclease family, domain 2 D1104_03185 PF01138 3' exoribonuclease family, domain 1 D1104_03185 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D1104_03185 PF00013 KH domain D1104_03190 PF00521 DNA gyrase/topoisomerase IV, subunit A D1104_03190 PF03989 DNA gyrase C-terminal domain, beta-propeller D1104_03200 PF03882 MukF winged-helix domain D1104_03200 PF17192 MukF middle domain D1104_03200 PF17193 MukF C-terminal domain D1104_03205 PF04288 MukE-like family D1104_03210 PF16330 MukB hinge domain D1104_03210 PF04310 MukB N-terminal D1104_03215 PF07690 Major Facilitator Superfamily D1104_03220 PF11893 Domain of unknown function (DUF3413) D1104_03220 PF00884 Sulfatase D1104_03225 PF07208 Protein of unknown function (DUF1414) D1104_03230 PF00440 Bacterial regulatory proteins, tetR family D1104_03235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1104_03240 PF00873 AcrB/AcrD/AcrF family D1104_03245 PF12804 MobA-like NTP transferase domain D1104_03245 PF00132 Bacterial transferase hexapeptide (six repeats) D1104_03255 PF08942 Domain of unknown function (DUF1919) D1104_03260 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1104_03260 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1104_03260 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1104_03260 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1104_03265 PF02540 NAD synthase D1104_03265 PF00958 GMP synthase C terminal domain D1104_03265 PF00117 Glutamine amidotransferase class-I D1104_03275 PF00571 CBS domain D1104_03275 PF00478 IMP dehydrogenase / GMP reductase domain D1104_03280 PF01728 FtsJ-like methyltransferase D1104_03285 PF01434 Peptidase family M41 D1104_03285 PF17862 AAA+ lid domain D1104_03285 PF00004 ATPase family associated with various cellular activities (AAA) D1104_03285 PF06480 FtsH Extracellular D1104_03290 PF03222 Tryptophan/tyrosine permease family D1104_03295 PF03222 Tryptophan/tyrosine permease family D1104_03300 PF08335 GlnD PII-uridylyltransferase D1104_03300 PF01966 HD domain D1104_03305 PF06295 Protein of unknown function (DUF1043) D1104_03310 PF00572 Ribosomal protein L13 D1104_03315 PF00380 Ribosomal protein S9/S16 D1104_03320 PF03883 Peroxide stress protein YaaA D1104_03330 PF01545 Cation efflux family D1104_03330 PF16916 Dimerisation domain of Zinc Transporter D1104_03335 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) D1104_03340 PF00375 Sodium:dicarboxylate symporter family D1104_03345 PF00881 Nitroreductase family D1104_03350 PF01409 tRNA synthetases class II core domain (F) D1104_03350 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D1104_03355 PF03484 tRNA synthetase B5 domain D1104_03355 PF01588 Putative tRNA binding domain D1104_03355 PF03147 Ferredoxin-fold anticodon binding domain D1104_03355 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D1104_03355 PF03483 B3/4 domain D1104_03360 PF00216 Bacterial DNA-binding protein D1104_03365 PF00877 NlpC/P60 family D1104_03380 PF00480 ROK family D1104_03380 PF01047 MarR family D1104_03385 PF01612 3'-5' exonuclease D1104_03385 PF00570 HRDC domain D1104_03390 PF01037 Lrp/AsnC ligand binding domain D1104_03395 PF01580 FtsK/SpoIIIE family D1104_03395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D1104_03395 PF17854 FtsK alpha domain D1104_03395 PF09397 Ftsk gamma domain D1104_03400 PF04228 Putative neutral zinc metallopeptidase D1104_03405 PF00793 DAHP synthetase I family D1104_03410 PF00814 Glycoprotease family D1104_03415 PF00265 Thymidine kinase D1104_03420 PF06005 Cell division protein ZapB D1104_03425 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D1104_03430 PF01784 NIF3 (NGG1p interacting factor 3) D1104_03435 PF12704 MacB-like periplasmic core domain D1104_03435 PF02687 FtsX-like permease family D1104_03435 PF00005 ABC transporter D1104_03440 PF00672 HAMP domain D1104_03440 PF16527 Two-component sensor protein CpxA, periplasmic domain D1104_03440 PF00512 His Kinase A (phospho-acceptor) domain D1104_03440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1104_03445 PF00072 Response regulator receiver domain D1104_03445 PF00486 Transcriptional regulatory protein, C terminal D1104_03450 PF03819 MazG nucleotide pyrophosphohydrolase domain D1104_03455 PF17848 Acetyl-coA carboxylase zinc finger domain D1104_03455 PF01039 Carboxyl transferase domain D1104_03460 PF08245 Mur ligase middle domain D1104_03470 PF02576 RimP N-terminal domain D1104_03470 PF17384 RimP C-terminal SH3 domain D1104_03475 PF13184 NusA-like KH domain D1104_03475 PF00575 S1 RNA binding domain D1104_03475 PF08529 NusA N-terminal domain D1104_03480 PF00009 Elongation factor Tu GTP binding domain D1104_03480 PF04760 Translation initiation factor IF-2, N-terminal region D1104_03480 PF11987 Translation-initiation factor 2 D1104_03485 PF02033 Ribosome-binding factor A D1104_03490 PF16198 tRNA pseudouridylate synthase B C-terminal domain D1104_03490 PF09157 Pseudouridine synthase II TruB, C-terminal D1104_03490 PF01509 TruB family pseudouridylate synthase (N terminal domain) D1104_03495 PF13406 Transglycosylase SLT domain D1104_03500 PF07411 Domain of unknown function (DUF1508) D1104_03505 PF01515 Phosphate acetyl/butaryl transferase D1104_03505 PF07085 DRTGG domain D1104_03510 PF00871 Acetokinase family D1104_03515 PF00149 Calcineurin-like phosphoesterase D1104_03515 PF02872 5'-nucleotidase, C-terminal domain D1104_03525 PF13609 Gram-negative porin D1104_03535 PF00483 Nucleotidyl transferase D1104_03540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1104_03540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1104_03540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1104_03540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1104_03545 PF02599 Global regulator protein family D1104_03550 PF02272 DHHA1 domain D1104_03550 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1104_03550 PF01411 tRNA synthetases class II (A) D1104_03555 PF00582 Universal stress protein family D1104_03560 PF00027 Cyclic nucleotide-binding domain D1104_03560 PF00325 Bacterial regulatory proteins, crp family D1104_03565 PF04386 Stringent starvation protein B D1104_03570 PF02798 Glutathione S-transferase, N-terminal domain D1104_03570 PF00043 Glutathione S-transferase, C-terminal domain D1104_03575 PF00731 AIR carboxylase D1104_03580 PF17763 Glutaminase/Asparaginase C-terminal domain D1104_03580 PF00710 Asparaginase, N-terminal D1104_03585 PF02222 ATP-grasp domain D1104_03585 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D1104_03590 PF00155 Aminotransferase class I and II D1104_03595 PF05195 Aminopeptidase P, N-terminal domain D1104_03595 PF00557 Metallopeptidase family M24 D1104_03605 PF17757 UvrB interaction domain D1104_03605 PF12344 Ultra-violet resistance protein B D1104_03605 PF02151 UvrB/uvrC motif D1104_03605 PF04851 Type III restriction enzyme, res subunit D1104_03605 PF00271 Helicase conserved C-terminal domain D1104_03615 PF09375 Imelysin D1104_03620 PF10518 TAT (twin-arginine translocation) pathway signal sequence D1104_03620 PF04261 Dyp-type peroxidase family D1104_03630 PF02811 PHP domain D1104_03640 PF00929 Exonuclease D1104_03640 PF08411 Exonuclease C-terminal D1104_03645 PF00654 Voltage gated chloride channel D1104_03650 PF01336 OB-fold nucleic acid binding domain D1104_03650 PF00152 tRNA synthetases class II (D, K and N) D1104_03655 PF04055 Radical SAM superfamily D1104_03665 PF09285 Elongation factor P, C-terminal D1104_03665 PF01132 Elongation factor P (EF-P) OB domain D1104_03665 PF08207 Elongation factor P (EF-P) KOW-like domain D1104_03670 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D1104_03670 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1104_03675 PF07690 Major Facilitator Superfamily D1104_03680 PF01464 Transglycosylase SLT domain D1104_03680 PF14718 Soluble lytic murein transglycosylase L domain D1104_03685 PF00156 Phosphoribosyl transferase domain D1104_03690 PF01053 Cys/Met metabolism PLP-dependent enzyme D1104_03695 PF01113 Dihydrodipicolinate reductase, N-terminus D1104_03695 PF05173 Dihydrodipicolinate reductase, C-terminus D1104_03700 PF01728 FtsJ-like methyltransferase D1104_03700 PF18125 RlmM ferredoxin-like domain D1104_03705 PF04241 Protein of unknown function (DUF423) D1104_03710 PF01565 FAD binding domain D1104_03710 PF09330 D-lactate dehydrogenase, membrane binding D1104_03715 PF00384 Molybdopterin oxidoreductase D1104_03715 PF18364 Molybdopterin oxidoreductase N-terminal domain D1104_03715 PF01568 Molydopterin dinucleotide binding domain D1104_03720 PF03264 NapC/NirT cytochrome c family, N-terminal region D1104_03725 PF06463 Molybdenum Cofactor Synthesis C D1104_03725 PF04055 Radical SAM superfamily D1104_03730 PF01967 MoaC family D1104_03735 PF02597 ThiS family D1104_03740 PF02391 MoaE protein D1104_03745 PF02130 Uncharacterized protein family UPF0054 D1104_03750 PF17176 tRNA-binding domain D1104_03750 PF05127 Helicase D1104_03750 PF13718 GNAT acetyltransferase 2 D1104_03755 PF01751 Toprim domain D1104_03755 PF01131 DNA topoisomerase D1104_03755 PF08272 Topoisomerase I zinc-ribbon-like D1104_03755 PF01396 Topoisomerase DNA binding C4 zinc finger D1104_03760 PF03466 LysR substrate binding domain D1104_03760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_03765 PF00696 Amino acid kinase family D1104_03765 PF00583 Acetyltransferase (GNAT) family D1104_03770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1104_03775 PF00155 Aminotransferase class I and II D1104_03780 PF01053 Cys/Met metabolism PLP-dependent enzyme D1104_03785 PF00266 Aminotransferase class-V D1104_03790 PF00271 Helicase conserved C-terminal domain D1104_03790 PF00176 SNF2 family N-terminal domain D1104_03800 PF01555 DNA methylase D1104_03810 PF01418 Helix-turn-helix domain, rpiR family D1104_03810 PF01380 SIS domain D1104_03815 PF04074 YhcH/YjgK/YiaL D1104_03820 PF02541 Ppx/GppA phosphatase family D1104_03825 PF04363 Protein of unknown function (DUF496) D1104_03830 PF00696 Amino acid kinase family D1104_03830 PF01842 ACT domain D1104_03835 PF03477 ATP cone domain D1104_03840 PF05166 YcgL domain D1104_03845 PF03796 DnaB-like helicase C terminal domain D1104_03845 PF00772 DnaB-like helicase N terminal domain D1104_03850 PF01497 Periplasmic binding protein D1104_03855 PF01032 FecCD transport family D1104_03860 PF01032 FecCD transport family D1104_03865 PF00005 ABC transporter D1104_03870 PF01865 Protein of unknown function DUF47 D1104_03875 PF01384 Phosphate transporter family D1104_03880 PF08239 Bacterial SH3 domain D1104_03890 PF01814 Hemerythrin HHE cation binding domain D1104_03895 PF01702 Queuine tRNA-ribosyltransferase D1104_03905 PF00313 'Cold-shock' DNA-binding domain D1104_03910 PF00484 Carbonic anhydrase D1104_03915 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1104_03915 PF00205 Thiamine pyrophosphate enzyme, central domain D1104_03915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1104_03920 PF10369 Small subunit of acetolactate synthase D1104_03925 PF01523 Putative modulator of DNA gyrase D1104_03930 PF04751 Protein of unknown function (DUF615) D1104_03935 PF04247 Invasion gene expression up-regulator, SirB D1104_03940 PF02441 Flavoprotein D1104_03945 PF04474 Protein of unknown function (DUF554) D1104_03955 PF01253 Translation initiation factor SUI1 D1104_03960 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1104_03965 PF18073 Rubredoxin metal binding domain D1104_03970 PF06305 Lipopolysaccharide assembly protein A domain D1104_03975 PF00216 Bacterial DNA-binding protein D1104_03980 PF00575 S1 RNA binding domain D1104_03985 PF02224 Cytidylate kinase D1104_03990 PF13180 PDZ domain D1104_04000 PF03840 Preprotein translocase SecG subunit D1104_04005 PF01131 DNA topoisomerase D1104_04005 PF01751 Toprim domain D1104_04010 PF00245 Alkaline phosphatase D1104_04015 PF03411 Penicillin-insensitive murein endopeptidase D1104_04020 PF01264 Chorismate synthase D1104_04025 PF00924 Mechanosensitive ion channel D1104_04025 PF12795 Mechanosensitive ion channel porin domain D1104_04025 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1104_04030 PF12795 Mechanosensitive ion channel porin domain D1104_04030 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1104_04030 PF00924 Mechanosensitive ion channel D1104_04035 PF00501 AMP-binding enzyme D1104_04040 PF17206 SeqA protein N-terminal domain D1104_04040 PF03925 SeqA protein C-terminal domain D1104_04045 PF00561 alpha/beta hydrolase fold D1104_04050 PF13649 Methyltransferase domain D1104_04070 PF00575 S1 RNA binding domain D1104_04070 PF00773 RNB domain D1104_04070 PF08206 Ribonuclease B OB domain D1104_04075 PF03788 LrgA family D1104_04080 PF04172 LrgB-like family D1104_04085 PF00149 Calcineurin-like phosphoesterase D1104_04095 PF03889 Alternative ribosome-rescue factor A D1104_04100 PF13649 Methyltransferase domain D1104_04105 PF01594 AI-2E family transporter D1104_04110 PF01933 Uncharacterised protein family UPF0052 D1104_04115 PF02547 Queuosine biosynthesis protein D1104_04120 PF00753 Metallo-beta-lactamase superfamily D1104_04120 PF13567 Domain of unknown function (DUF4131) D1104_04120 PF03772 Competence protein D1104_04125 PF00375 Sodium:dicarboxylate symporter family D1104_04135 PF01219 Prokaryotic diacylglycerol kinase D1104_04140 PF00149 Calcineurin-like phosphoesterase D1104_04140 PF02872 5'-nucleotidase, C-terminal domain D1104_04165 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1104_04165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1104_04170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1104_04170 PF02817 e3 binding domain D1104_04170 PF00364 Biotin-requiring enzyme D1104_04175 PF17831 Pyruvate dehydrogenase E1 component middle domain D1104_04175 PF00456 Transketolase, thiamine diphosphate binding domain D1104_04180 PF01180 Dihydroorotate dehydrogenase D1104_04185 PF14572 Phosphoribosyl synthetase-associated domain D1104_04185 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D1104_04190 PF08544 GHMP kinases C terminal D1104_04190 PF00288 GHMP kinases N terminal domain D1104_04195 PF03550 Outer membrane lipoprotein LolB D1104_04200 PF00664 ABC transporter transmembrane region D1104_04200 PF00005 ABC transporter D1104_04205 PF04172 LrgB-like family D1104_04215 PF06733 DEAD_2 D1104_04215 PF13307 Helicase C-terminal domain D1104_04225 PF17760 UvrA interaction domain D1104_04225 PF17755 UvrA DNA-binding domain D1104_04230 PF00436 Single-strand binding protein family D1104_04255 PF03466 LysR substrate binding domain D1104_04255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_04260 PF03060 Nitronate monooxygenase D1104_04270 PF04237 YjbR D1104_04275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1104_04275 PF00005 ABC transporter D1104_04280 PF12911 N-terminal TM domain of oligopeptide transport permease C D1104_04280 PF00528 Binding-protein-dependent transport system inner membrane component D1104_04285 PF00528 Binding-protein-dependent transport system inner membrane component D1104_04290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1104_04295 PF18024 Helix-turn-helix domain D1104_04295 PF00158 Sigma-54 interaction domain D1104_04300 PF13580 SIS domain D1104_04305 PF01293 Phosphoenolpyruvate carboxykinase D1104_04310 PF04977 Septum formation initiator D1104_04315 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D1104_04320 PF02542 YgbB family D1104_04330 PF00884 Sulfatase D1104_04335 PF00111 2Fe-2S iron-sulfur cluster binding domain D1104_04335 PF03473 MOSC domain D1104_04335 PF03476 MOSC N-terminal beta barrel domain D1104_04340 PF02609 Exonuclease VII small subunit D1104_04345 PF00348 Polyprenyl synthetase D1104_04355 PF01336 OB-fold nucleic acid binding domain D1104_04355 PF00152 tRNA synthetases class II (D, K and N) D1104_04360 PF10150 Ribonuclease E/G family D1104_04360 PF00575 S1 RNA binding domain D1104_04365 PF18381 YcaO cyclodehydratase C-terminal domain D1104_04365 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding D1104_04375 PF18273 Type III R-M EcoP15I C-terminal domain D1104_04375 PF01555 DNA methylase D1104_04380 PF08003 Protein of unknown function (DUF1698) D1104_04390 PF03562 MltA specific insert domain D1104_04390 PF06725 3D domain D1104_04400 PF02601 Exonuclease VII, large subunit D1104_04400 PF13742 OB-fold nucleic acid binding domain D1104_04410 PF00576 HIUase/Transthyretin family D1104_04415 PF00356 Bacterial regulatory proteins, lacI family D1104_04415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D1104_04420 PF09335 SNARE associated Golgi protein D1104_04425 PF00204 DNA gyrase B D1104_04425 PF18053 DNA gyrase B subunit insert domain D1104_04425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1104_04425 PF00986 DNA gyrase B subunit, carboxyl terminus D1104_04425 PF01751 Toprim domain D1104_04430 PF01040 UbiA prenyltransferase family D1104_04435 PF08220 DeoR-like helix-turn-helix domain D1104_04435 PF00455 DeoR C terminal sensor domain D1104_04440 PF00206 Lyase D1104_04440 PF08328 Adenylosuccinate lyase C-terminal D1104_04445 PF04356 Protein of unknown function (DUF489) D1104_04450 PF00005 ABC transporter D1104_04450 PF00664 ABC transporter transmembrane region D1104_04455 PF00005 ABC transporter D1104_04455 PF00664 ABC transporter transmembrane region D1104_04460 PF04357 TamB, inner membrane protein subunit of TAM complex D1104_04465 PF17243 POTRA domain TamA domain 1 D1104_04465 PF01103 Surface antigen D1104_04470 PF04748 Divergent polysaccharide deacetylase D1104_04475 PF01551 Peptidase family M23 D1104_04480 PF00300 Histidine phosphatase superfamily (branch 1) D1104_04485 PF01810 LysE type translocator D1104_04490 PF00485 Phosphoribulokinase / Uridine kinase family D1104_04495 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) D1104_04500 PF00440 Bacterial regulatory proteins, tetR family D1104_04500 PF14278 Transcriptional regulator C-terminal region D1104_04505 PF13533 Biotin-lipoyl like D1104_04510 PF00005 ABC transporter D1104_04520 PF02321 Outer membrane efflux protein D1104_04525 PF02233 NAD(P) transhydrogenase beta subunit D1104_04530 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D1104_04530 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D1104_04530 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D1104_04535 PF00588 SpoU rRNA Methylase family D1104_04540 PF14489 QueF-like protein D1104_04540 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D1104_04550 PF00578 AhpC/TSA family D1104_04555 PF04055 Radical SAM superfamily D1104_04555 PF06969 HemN C-terminal domain D1104_04560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1104_04565 PF00528 Binding-protein-dependent transport system inner membrane component D1104_04570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1104_04570 PF00005 ABC transporter D1104_04575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1104_04575 PF00005 ABC transporter D1104_04580 PF00890 FAD binding domain D1104_04585 PF01717 Cobalamin-independent synthase, Catalytic domain D1104_04590 PF02219 Methylenetetrahydrofolate reductase D1104_04595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1104_04600 PF03222 Tryptophan/tyrosine permease family D1104_04605 PF03315 Serine dehydratase beta chain D1104_04605 PF03313 Serine dehydratase alpha chain D1104_04610 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D1104_04610 PF01266 FAD dependent oxidoreductase D1104_04615 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D1104_04615 PF00218 Indole-3-glycerol phosphate synthase D1104_04620 PF02661 Fic/DOC family D1104_04620 PF12728 Helix-turn-helix domain D1104_04625 PF04287 tRNA pseudouridine synthase C D1104_04630 PF00849 RNA pseudouridylate synthase D1104_04635 PF03701 Uncharacterised protein family (UPF0181) D1104_04645 PF01928 CYTH domain D1104_04650 PF04317 YcjX-like family, DUF463 D1104_04655 PF01668 SmpB protein D1104_04660 PF02403 Seryl-tRNA synthetase N-terminal domain D1104_04660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1104_04665 PF07687 Peptidase dimerisation domain D1104_04665 PF01546 Peptidase family M20/M25/M40 D1104_04670 PF03606 C4-dicarboxylate anaerobic carrier D1104_04675 PF03575 Peptidase family S51 D1104_04680 PF13603 Leucyl-tRNA synthetase, Domain 2 D1104_04680 PF00133 tRNA synthetases class I (I, L, M and V) D1104_04680 PF08264 Anticodon-binding domain of tRNA D1104_04685 PF04390 Lipopolysaccharide-assembly D1104_04690 PF06144 DNA polymerase III, delta subunit D1104_04690 PF14840 Processivity clamp loader gamma complex DNA pol III C-term D1104_04695 PF03884 DNA gyrase inhibitor YacG D1104_04700 PF01121 Dephospho-CoA kinase D1104_04710 PF00482 Type II secretion system (T2SS), protein F D1104_04715 PF00437 Type II/IV secretion system protein D1104_04715 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D1104_04720 PF07963 Prokaryotic N-terminal methylation motif D1104_04725 PF18073 Rubredoxin metal binding domain D1104_04735 PF00186 Dihydrofolate reductase D1104_04740 PF01472 PUA domain D1104_04740 PF00696 Amino acid kinase family D1104_04745 PF01925 Sulfite exporter TauE/SafE D1104_04750 PF00730 HhH-GPD superfamily base excision DNA repair protein D1104_04750 PF00633 Helix-hairpin-helix motif D1104_04750 PF10576 Iron-sulfur binding domain of endonuclease III D1104_04755 PF00108 Thiolase, N-terminal domain D1104_04755 PF02803 Thiolase, C-terminal domain D1104_04760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D1104_04760 PF00378 Enoyl-CoA hydratase/isomerase D1104_04760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D1104_04775 PF02634 FdhD/NarQ family D1104_04780 PF01568 Molydopterin dinucleotide binding domain D1104_04780 PF00384 Molybdopterin oxidoreductase D1104_04780 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1104_04785 PF01568 Molydopterin dinucleotide binding domain D1104_04785 PF00384 Molybdopterin oxidoreductase D1104_04785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1104_04790 PF13247 4Fe-4S dicluster domain D1104_04790 PF09163 Formate dehydrogenase N, transmembrane D1104_04795 PF01292 Prokaryotic cytochrome b561 D1104_04800 PF04216 Protein involved in formate dehydrogenase formation D1104_04815 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D1104_04815 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D1104_04825 PF00701 Dihydrodipicolinate synthetase family D1104_04830 PF03279 Bacterial lipid A biosynthesis acyltransferase D1104_04835 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D1104_04840 PF01416 tRNA pseudouridine synthase D1104_04845 PF01227 GTP cyclohydrolase I D1104_04860 PF12464 Maltose acetyltransferase D1104_04860 PF14602 Hexapeptide repeat of succinyl-transferase D1104_04875 PF06252 Protein of unknown function (DUF1018) D1104_04895 PF07352 Bacteriophage Mu Gam like protein D1104_04905 PF01471 Putative peptidoglycan binding domain D1104_04905 PF13401 AAA domain D1104_04990 PF03237 Terminase-like family D1104_05100 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D1104_05105 PF03466 LysR substrate binding domain D1104_05105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_05110 PF03180 NLPA lipoprotein D1104_05115 PF03180 NLPA lipoprotein D1104_05120 PF00528 Binding-protein-dependent transport system inner membrane component D1104_05125 PF09383 NIL domain D1104_05125 PF00005 ABC transporter D1104_05135 PF09190 DALR domain D1104_05135 PF01406 tRNA synthetases class I (C) catalytic domain D1104_05140 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1104_05145 PF12627 Probable RNA and SrmB- binding site of polymerase A D1104_05145 PF01743 Poly A polymerase head domain D1104_05145 PF01966 HD domain D1104_05155 PF00593 TonB dependent receptor D1104_05155 PF07715 TonB-dependent Receptor Plug Domain D1104_05180 PF04384 Iron-sulphur cluster assembly D1104_05185 PF00111 2Fe-2S iron-sulfur cluster binding domain D1104_05190 PF00012 Hsp70 protein D1104_05195 PF10946 Protein of unknown function DUF2625 D1104_05205 PF07743 HSCB C-terminal oligomerisation domain D1104_05210 PF01521 Iron-sulphur cluster biosynthesis D1104_05215 PF01592 NifU-like N terminal domain D1104_05220 PF00266 Aminotransferase class-V D1104_05225 PF02082 Transcriptional regulator D1104_05230 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D1104_05235 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D1104_05235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D1104_05240 PF00512 His Kinase A (phospho-acceptor) domain D1104_05240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1104_05240 PF01627 Hpt domain D1104_05240 PF18415 Histidine kinase receptor ArcB trans-membrane domain D1104_05240 PF00072 Response regulator receiver domain D1104_05240 PF00989 PAS fold D1104_05250 PF01713 Smr domain D1104_05260 PF08241 Methyltransferase domain D1104_05265 PF04301 Protein of unknown function (DUF452) D1104_05270 PF00155 Aminotransferase class I and II D1104_05275 PF00202 Aminotransferase class-III D1104_05280 PF05175 Methyltransferase small domain D1104_05285 PF03449 Transcription elongation factor, N-terminal D1104_05285 PF01272 Transcription elongation factor, GreA/GreB, C-term D1104_05290 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D1104_05315 PF08339 RTX C-terminal domain D1104_05315 PF02382 N-terminal domain in RTX protein D1104_05315 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1104_05320 PF02794 RTX toxin acyltransferase family D1104_05325 PF17176 tRNA-binding domain D1104_05325 PF13718 GNAT acetyltransferase 2 D1104_05325 PF05127 Helicase D1104_05330 PF01808 AICARFT/IMPCHase bienzyme D1104_05330 PF02142 MGS-like domain D1104_05340 PF04829 Pre-toxin domain with VENN motif D1104_05340 PF05860 haemagglutination activity domain D1104_05340 PF13332 Hemagglutinin repeat D1104_05340 PF13018 Extended Signal Peptide of Type V secretion system D1104_05350 PF03968 OstA-like protein D1104_05350 PF04453 LPS transport system D D1104_05355 PF04055 Radical SAM superfamily D1104_05355 PF06969 HemN C-terminal domain D1104_05365 PF04220 Der GTPase activator (YihI) D1104_05370 PF02080 TrkA-C domain D1104_05370 PF06826 Predicted Permease Membrane Region D1104_05375 PF03616 Sodium/glutamate symporter D1104_05380 PF06062 Uncharacterised protein family (UPF0231) D1104_05385 PF03710 Glutamate-ammonia ligase adenylyltransferase D1104_05385 PF08335 GlnD PII-uridylyltransferase D1104_05390 PF03795 YCII-related domain D1104_05395 PF03061 Thioesterase superfamily D1104_05400 PF04279 Intracellular septation protein A D1104_05410 PF04217 Protein of unknown function, DUF412 D1104_05415 PF01171 PP-loop family D1104_05420 PF03553 Na+/H+ antiporter family D1104_05420 PF13726 Na+-H+ antiporter family D1104_05425 PF03372 Endonuclease/Exonuclease/phosphatase family D1104_05430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_05430 PF03466 LysR substrate binding domain D1104_05440 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1104_05455 PF01197 Ribosomal protein L31 D1104_05460 PF00456 Transketolase, thiamine diphosphate binding domain D1104_05460 PF02780 Transketolase, C-terminal domain D1104_05460 PF02779 Transketolase, pyrimidine binding domain D1104_05465 PF00183 Hsp90 protein D1104_05465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1104_05470 PF06628 Catalase-related immune-responsive D1104_05470 PF00199 Catalase D1104_05480 PF00149 Calcineurin-like phosphoesterase D1104_05485 PF03477 ATP cone domain D1104_05485 PF02867 Ribonucleotide reductase, barrel domain D1104_05485 PF00317 Ribonucleotide reductase, all-alpha domain D1104_05490 PF00268 Ribonucleotide reductase, small chain D1104_05495 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D1104_05495 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D1104_05500 PF08544 GHMP kinases C terminal D1104_05500 PF10509 Galactokinase galactose-binding signature D1104_05500 PF00288 GHMP kinases N terminal domain D1104_05505 PF01263 Aldose 1-epimerase D1104_05510 PF02837 Glycosyl hydrolases family 2, sugar binding domain D1104_05510 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D1104_05510 PF00703 Glycosyl hydrolases family 2 D1104_05510 PF16353 Domain of unknown function(DUF4981) D1104_05510 PF02929 Beta galactosidase small chain D1104_05535 PF10609 NUBPL iron-transfer P-loop NTPase D1104_05545 PF01914 MarC family integral membrane protein D1104_05550 PF13145 PPIC-type PPIASE domain D1104_05555 PF00999 Sodium/hydrogen exchanger family D1104_05560 PF00312 Ribosomal protein S15 D1104_05565 PF05661 Protein of unknown function (DUF808) D1104_05570 PF07219 HemY protein N-terminus D1104_05575 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D1104_05580 PF02602 Uroporphyrinogen-III synthase HemD D1104_05585 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D1104_05585 PF03900 Porphobilinogen deaminase, C-terminal domain D1104_05590 PF00171 Aldehyde dehydrogenase family D1104_05590 PF00465 Iron-containing alcohol dehydrogenase D1104_05595 PF00118 TCP-1/cpn60 chaperonin family D1104_05600 PF00166 Chaperonin 10 Kd subunit D1104_05605 PF01048 Phosphorylase superfamily D1104_05610 PF01791 DeoC/LacD family aldolase D1104_05615 PF07670 Nucleoside recognition D1104_05615 PF07662 Na+ dependent nucleoside transporter C-terminus D1104_05615 PF01773 Na+ dependent nucleoside transporter N-terminus D1104_05625 PF01081 KDPG and KHG aldolase D1104_05630 PF00294 pfkB family carbohydrate kinase D1104_05635 PF02614 Glucuronate isomerase D1104_05645 PF07729 FCD domain D1104_05645 PF00392 Bacterial regulatory proteins, gntR family D1104_05655 PF01625 Peptide methionine sulfoxide reductase D1104_05655 PF01641 SelR domain D1104_05660 PF00535 Glycosyl transferase family 2 D1104_05665 PF00535 Glycosyl transferase family 2 D1104_05675 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1104_05685 PF04230 Polysaccharide pyruvyl transferase D1104_05690 PF02698 DUF218 domain D1104_05695 PF00270 DEAD/DEAH box helicase D1104_05695 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D1104_05695 PF18074 Primosomal protein N C-terminal domain D1104_05695 PF00271 Helicase conserved C-terminal domain D1104_05695 PF17764 3′ DNA-binding domain (3′BD) D1104_05700 PF00800 Prephenate dehydratase D1104_05700 PF01817 Chorismate mutase type II D1104_05705 PF01432 Peptidase family M3 D1104_05710 PF04055 Radical SAM superfamily D1104_05715 PF02901 Pyruvate formate lyase-like D1104_05715 PF01228 Glycine radical D1104_05720 PF01226 Formate/nitrite transporter D1104_05730 PF01435 Peptidase family M48 D1104_05735 PF00817 impB/mucB/samB family D1104_05735 PF11799 impB/mucB/samB family C-terminal domain D1104_05735 PF11798 IMS family HHH motif D1104_05740 PF03956 Lysine exporter LysO D1104_05745 PF00425 chorismate binding enzyme D1104_05750 PF00155 Aminotransferase class I and II D1104_05755 PF00892 EamA-like transporter family D1104_05760 PF00892 EamA-like transporter family D1104_05780 PF07715 TonB-dependent Receptor Plug Domain D1104_05780 PF04886 PT repeat D1104_05780 PF00593 TonB dependent receptor D1104_05785 PF01243 Pyridoxamine 5'-phosphate oxidase D1104_05795 PF03918 Cytochrome C biogenesis protein D1104_05800 PF08534 Redoxin D1104_05805 PF01578 Cytochrome C assembly protein D1104_05805 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1104_05810 PF02254 TrkA-N domain D1104_05810 PF00999 Sodium/hydrogen exchanger family D1104_05815 PF12633 Adenylate cyclase NT domain D1104_05815 PF01295 Adenylate cyclase, class-I D1104_05820 PF02801 Beta-ketoacyl synthase, C-terminal domain D1104_05820 PF00109 Beta-ketoacyl synthase, N-terminal domain D1104_05835 PF04076 Bacterial OB fold (BOF) protein D1104_05850 PF00072 Response regulator receiver domain D1104_05850 PF00486 Transcriptional regulatory protein, C terminal D1104_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1104_05855 PF08521 Two-component sensor kinase N-terminal D1104_05855 PF00512 His Kinase A (phospho-acceptor) domain D1104_05860 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D1104_05865 PF02699 Preprotein translocase subunit D1104_05870 PF02355 Protein export membrane protein D1104_05870 PF13721 SecD export protein N-terminal TM region D1104_05870 PF07549 SecD/SecF GG Motif D1104_05875 PF02355 Protein export membrane protein D1104_05875 PF07549 SecD/SecF GG Motif D1104_05880 PF00210 Ferritin-like domain D1104_05885 PF00210 Ferritin-like domain D1104_05890 PF00860 Permease family D1104_05895 PF02545 Maf-like protein D1104_05910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_05910 PF03466 LysR substrate binding domain D1104_05925 PF13173 AAA domain D1104_05925 PF13635 Domain of unknown function (DUF4143) D1104_05940 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D1104_05945 PF02926 THUMP domain D1104_05945 PF02568 Thiamine biosynthesis protein (ThiI) D1104_05950 PF00709 Adenylosuccinate synthetase D1104_05960 PF01145 SPFH domain / Band 7 family D1104_05965 PF01145 SPFH domain / Band 7 family D1104_05970 PF00085 Thioredoxin D1104_05975 PF00860 Permease family D1104_05980 PF02772 S-adenosylmethionine synthetase, central domain D1104_05980 PF00438 S-adenosylmethionine synthetase, N-terminal domain D1104_05980 PF02773 S-adenosylmethionine synthetase, C-terminal domain D1104_05990 PF13520 Amino acid permease D1104_05995 PF13520 Amino acid permease D1104_06005 PF01546 Peptidase family M20/M25/M40 D1104_06005 PF07687 Peptidase dimerisation domain D1104_06010 PF03922 OmpW family D1104_06015 PF10431 C-terminal, D2-small domain, of ClpB protein D1104_06015 PF02861 Clp amino terminal domain, pathogenicity island component D1104_06015 PF17871 AAA lid domain D1104_06015 PF07724 AAA domain (Cdc48 subfamily) D1104_06015 PF00004 ATPase family associated with various cellular activities (AAA) D1104_06020 PF01758 Sodium Bile acid symporter family D1104_06025 PF03960 ArsC family D1104_06035 PF00206 Lyase D1104_06035 PF10415 Fumarase C C-terminus D1104_06045 PF02769 AIR synthase related protein, C-terminal domain D1104_06045 PF00586 AIR synthase related protein, N-terminal domain D1104_06050 PF04650 YSIRK type signal peptide D1104_06050 PF00746 LPXTG cell wall anchor motif D1104_06050 PF00728 Glycosyl hydrolase family 20, catalytic domain D1104_06050 PF07501 G5 domain D1104_06055 PF06508 Queuosine biosynthesis protein QueC D1104_06060 PF01242 6-pyruvoyl tetrahydropterin synthase D1104_06065 PF04055 Radical SAM superfamily D1104_06080 PF02789 Cytosol aminopeptidase family, N-terminal domain D1104_06080 PF00883 Cytosol aminopeptidase family, catalytic domain D1104_06090 PF03739 Lipopolysaccharide export system permease LptF/LptG D1104_06095 PF03739 Lipopolysaccharide export system permease LptF/LptG D1104_06100 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D1104_06100 PF07733 Bacterial DNA polymerase III alpha NTPase domain D1104_06100 PF14579 Helix-hairpin-helix motif D1104_06100 PF02811 PHP domain D1104_06100 PF01336 OB-fold nucleic acid binding domain D1104_06105 PF01370 NAD dependent epimerase/dehydratase family D1104_06105 PF02222 ATP-grasp domain D1104_06110 PF01553 Acyltransferase D1104_06115 PF00717 Peptidase S24-like D1104_06115 PF01726 LexA DNA binding domain D1104_06120 PF02976 DNA mismatch repair enzyme MutH D1104_06125 PF03741 Integral membrane protein TerC family D1104_06130 PF00933 Glycosyl hydrolase family 3 N terminal domain D1104_06135 PF05958 tRNA (Uracil-5-)-methyltransferase D1104_06140 PF03952 Enolase, N-terminal domain D1104_06140 PF00113 Enolase, C-terminal TIM barrel domain D1104_06145 PF00293 NUDIX domain D1104_06150 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) D1104_06155 PF09382 RQC domain D1104_06155 PF16124 RecQ zinc-binding D1104_06155 PF00570 HRDC domain D1104_06155 PF00271 Helicase conserved C-terminal domain D1104_06155 PF00270 DEAD/DEAH box helicase D1104_06160 PF01491 Frataxin-like domain D1104_06165 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1104_06170 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1104_06175 PF00814 Glycoprotease family D1104_06180 PF13525 Outer membrane lipoprotein D1104_06185 PF01479 S4 domain D1104_06185 PF00849 RNA pseudouridylate synthase D1104_06190 PF14256 YwiC-like protein D1104_06195 PF00365 Phosphofructokinase D1104_06200 PF00266 Aminotransferase class-V D1104_06205 PF00565 Staphylococcal nuclease homologue D1104_06210 PF01235 Sodium:alanine symporter family D1104_06215 PF01594 AI-2E family transporter D1104_06225 PF16325 Peptidase family U32 C-terminal domain D1104_06225 PF01136 Peptidase family U32 D1104_06230 PF04932 O-Antigen ligase D1104_06235 PF00534 Glycosyl transferases group 1 D1104_06235 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D1104_06240 PF01467 Cytidylyltransferase-like D1104_06245 PF00929 Exonuclease D1104_06250 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D1104_06255 PF01520 N-acetylmuramoyl-L-alanine amidase D1104_06255 PF01476 LysM domain D1104_06260 PF00342 Phosphoglucose isomerase D1104_06265 PF04380 Membrane fusogenic activity D1104_06295 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D1104_06295 PF01488 Shikimate / quinate 5-dehydrogenase D1104_06295 PF08501 Shikimate dehydrogenase substrate binding domain D1104_06300 PF01300 Telomere recombination D1104_06305 PF01396 Topoisomerase DNA binding C4 zinc finger D1104_06310 PF04266 ASCH domain D1104_06315 PF02631 RecX family D1104_06320 PF00154 recA bacterial DNA recombination protein D1104_06325 PF01063 Amino-transferase class IV D1104_06330 PF00425 chorismate binding enzyme D1104_06335 PF02646 RmuC family D1104_06340 PF00117 Glutamine amidotransferase class-I D1104_06345 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D1104_06345 PF03625 Domain of unknown function DUF302 D1104_06350 PF00152 tRNA synthetases class II (D, K and N) D1104_06350 PF01336 OB-fold nucleic acid binding domain D1104_06350 PF02938 GAD domain D1104_06355 PF00293 NUDIX domain D1104_06360 PF01709 Transcriptional regulator D1104_06370 PF02075 Crossover junction endodeoxyribonuclease RuvC D1104_06375 PF05193 Peptidase M16 inactive domain D1104_06375 PF00675 Insulinase (Peptidase family M16) D1104_06380 PF01717 Cobalamin-independent synthase, Catalytic domain D1104_06380 PF08267 Cobalamin-independent synthase, N-terminal domain D1104_06385 PF00939 Sodium:sulfate symporter transmembrane region D1104_06390 PF03466 LysR substrate binding domain D1104_06390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_06395 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1104_06400 PF01479 S4 domain D1104_06400 PF00849 RNA pseudouridylate synthase D1104_06405 PF01300 Telomere recombination D1104_06415 PF04261 Dyp-type peroxidase family D1104_06420 PF00425 chorismate binding enzyme D1104_06420 PF04715 Anthranilate synthase component I, N terminal region D1104_06425 PF00117 Glutamine amidotransferase class-I D1104_06430 PF00591 Glycosyl transferase family, a/b domain D1104_06430 PF02885 Glycosyl transferase family, helical bundle domain D1104_06435 PF08241 Methyltransferase domain D1104_06440 PF16036 Chalcone isomerase-like D1104_06445 PF04325 Protein of unknown function (DUF465) D1104_06450 PF01281 Ribosomal protein L9, N-terminal domain D1104_06450 PF03948 Ribosomal protein L9, C-terminal domain D1104_06455 PF01084 Ribosomal protein S18 D1104_06460 PF00436 Single-strand binding protein family D1104_06465 PF01250 Ribosomal protein S6 D1104_06470 PF02843 Phosphoribosylglycinamide synthetase, C domain D1104_06470 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D1104_06470 PF02844 Phosphoribosylglycinamide synthetase, N domain D1104_06475 PF04973 Nicotinamide mononucleotide transporter D1104_06480 PF09976 Tetratricopeptide repeat-like domain D1104_06485 PF03129 Anticodon binding domain D1104_06485 PF13393 Histidyl-tRNA synthetase D1104_06490 PF04551 GcpE protein D1104_06495 PF13464 Domain of unknown function (DUF4115) D1104_06500 PF00916 Sulfate permease family D1104_06500 PF01740 STAS domain D1104_06505 PF00206 Lyase D1104_06505 PF14698 Argininosuccinate lyase C-terminal D1104_06510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D1104_06510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D1104_06515 PF02254 TrkA-N domain D1104_06515 PF00999 Sodium/hydrogen exchanger family D1104_06530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_06530 PF03466 LysR substrate binding domain D1104_06560 PF02566 OsmC-like protein D1104_06580 PF03328 HpcH/HpaI aldolase/citrate lyase family D1104_06590 PF12833 Helix-turn-helix domain D1104_06590 PF06719 AraC-type transcriptional regulator N-terminus D1104_06595 PF03466 LysR substrate binding domain D1104_06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_06600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D1104_06610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D1104_06610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D1104_06615 PF00881 Nitroreductase family D1104_06620 PF01914 MarC family integral membrane protein D1104_06630 PF00756 Putative esterase D1104_06635 PF02798 Glutathione S-transferase, N-terminal domain D1104_06650 PF00107 Zinc-binding dehydrogenase D1104_06650 PF08240 Alcohol dehydrogenase GroES-like domain D1104_06655 PF02028 BCCT, betaine/carnitine/choline family transporter D1104_06670 PF03595 Voltage-dependent anion channel D1104_06675 PF13419 Haloacid dehalogenase-like hydrolase D1104_06690 PF00005 ABC transporter D1104_06690 PF00664 ABC transporter transmembrane region D1104_06695 PF02664 S-Ribosylhomocysteinase (LuxS) D1104_06700 PF02470 MlaD protein D1104_06705 PF01475 Ferric uptake regulator family D1104_06710 PF00258 Flavodoxin D1104_06715 PF01402 Ribbon-helix-helix protein, copG family D1104_06720 PF04073 Aminoacyl-tRNA editing domain D1104_06730 PF00860 Permease family D1104_06735 PF02635 DsrE/DsrF-like family D1104_06745 PF01176 Translation initiation factor 1A / IF-1 D1104_06750 PF10144 Bacterial virulence factor haemolysin D1104_06755 PF18429 Domain of unknown function (DUF5609) D1104_06760 PF04461 Protein of unknown function (DUF520) D1104_06770 PF00343 Carbohydrate phosphorylase D1104_06775 PF00196 Bacterial regulatory proteins, luxR family D1104_06775 PF17874 MalT-like TPR region D1104_06780 PF07148 Maltose operon periplasmic protein precursor (MalM) D1104_06785 PF02264 LamB porin D1104_06790 PF17912 MalK OB fold domain D1104_06790 PF00005 ABC transporter D1104_06795 PF01547 Bacterial extracellular solute-binding protein D1104_06800 PF14785 Maltose transport system permease protein MalF P2 domain D1104_06800 PF00528 Binding-protein-dependent transport system inner membrane component D1104_06805 PF00528 Binding-protein-dependent transport system inner membrane component D1104_06810 PF02446 4-alpha-glucanotransferase D1104_06815 PF02554 Carbon starvation protein CstA D1104_06820 PF01026 TatD related DNase D1104_06825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1104_06825 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1104_06830 PF03350 Uncharacterized protein family, UPF0114 D1104_06835 PF00881 Nitroreductase family D1104_06850 PF00005 ABC transporter D1104_06855 PF01116 Fructose-bisphosphate aldolase class-II D1104_06860 PF00162 Phosphoglycerate kinase D1104_06865 PF00939 Sodium:sulfate symporter transmembrane region D1104_06870 PF00939 Sodium:sulfate symporter transmembrane region D1104_06875 PF00939 Sodium:sulfate symporter transmembrane region D1104_06880 PF01751 Toprim domain D1104_06880 PF00204 DNA gyrase B D1104_06880 PF00986 DNA gyrase B subunit, carboxyl terminus D1104_06880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1104_06885 PF00512 His Kinase A (phospho-acceptor) domain D1104_06885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1104_06890 PF00486 Transcriptional regulatory protein, C terminal D1104_06890 PF00072 Response regulator receiver domain D1104_06895 PF00005 ABC transporter D1104_06905 PF00528 Binding-protein-dependent transport system inner membrane component D1104_06910 PF12849 PBP superfamily domain D1104_06915 PF00376 MerR family regulatory protein D1104_06915 PF09278 MerR, DNA binding D1104_06925 PF00403 Heavy-metal-associated domain D1104_06930 PF00403 Heavy-metal-associated domain D1104_06935 PF00106 short chain dehydrogenase D1104_06940 PF00881 Nitroreductase family D1104_06945 PF01343 Peptidase family S49 D1104_06950 PF00445 Ribonuclease T2 family D1104_06955 PF10263 SprT-like family D1104_06955 PF17283 SprT-like zinc ribbon domain D1104_06960 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1104_06965 PF17674 HHH domain D1104_06965 PF16921 Tex protein YqgF-like domain D1104_06965 PF09371 Tex-like protein N-terminal domain D1104_06965 PF00575 S1 RNA binding domain D1104_06975 PF04055 Radical SAM superfamily D1104_07000 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1104_07010 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D1104_07015 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D1104_07020 PF03966 Trm112p-like protein D1104_07025 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D1104_07030 PF06689 ClpX C4-type zinc finger D1104_07030 PF07724 AAA domain (Cdc48 subfamily) D1104_07030 PF10431 C-terminal, D2-small domain, of ClpB protein D1104_07035 PF00574 Clp protease D1104_07040 PF02657 Fe-S metabolism associated domain D1104_07055 PF00929 Exonuclease D1104_07060 PF00005 ABC transporter D1104_07060 PF12848 ABC transporter D1104_07065 PF02627 Carboxymuconolactone decarboxylase family D1104_07080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1104_07085 PF01722 BolA-like protein D1104_07095 PF05494 MlaC protein D1104_07100 PF02470 MlaD protein D1104_07105 PF02405 Permease MlaE D1104_07110 PF00005 ABC transporter D1104_07115 PF00595 PDZ domain D1104_07120 PF01370 NAD dependent epimerase/dehydratase family D1104_07120 PF08338 Domain of unknown function (DUF1731) D1104_07125 PF02863 Arginine repressor, C-terminal domain D1104_07125 PF01316 Arginine repressor, DNA binding domain D1104_07130 PF00056 lactate/malate dehydrogenase, NAD binding domain D1104_07130 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D1104_07140 PF05191 Adenylate kinase, active site lid D1104_07150 PF07690 Major Facilitator Superfamily D1104_07155 PF01370 NAD dependent epimerase/dehydratase family D1104_07160 PF01653 NAD-dependent DNA ligase adenylation domain D1104_07160 PF03120 NAD-dependent DNA ligase OB-fold domain D1104_07160 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D1104_07160 PF12826 Helix-hairpin-helix motif D1104_07160 PF00533 BRCA1 C Terminus (BRCT) domain D1104_07165 PF04354 ZipA, C-terminal FtsZ-binding domain D1104_07180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D1104_07180 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D1104_07195 PF07690 Major Facilitator Superfamily D1104_07200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1104_07205 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D1104_07205 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D1104_07210 PF00459 Inositol monophosphatase family D1104_07215 PF00293 NUDIX domain D1104_07220 PF01479 S4 domain D1104_07225 PF01430 Hsp33 protein D1104_07230 PF03605 Anaerobic c4-dicarboxylate membrane transporter D1104_07235 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D1104_07235 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D1104_07240 PF00696 Amino acid kinase family D1104_07245 PF00367 phosphotransferase system, EIIB D1104_07245 PF02378 Phosphotransferase system, EIIC D1104_07250 PF00005 ABC transporter D1104_07255 PF00528 Binding-protein-dependent transport system inner membrane component D1104_07260 PF00381 PTS HPr component phosphorylation site D1104_07265 PF00391 PEP-utilising enzyme, mobile domain D1104_07265 PF02896 PEP-utilising enzyme, TIM barrel domain D1104_07265 PF05524 PEP-utilising enzyme, N-terminal D1104_07270 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D1104_07275 PF04055 Radical SAM superfamily D1104_07275 PF01938 TRAM domain D1104_07275 PF00919 Uncharacterized protein family UPF0004 D1104_07280 PF00580 UvrD/REP helicase N-terminal domain D1104_07280 PF13361 UvrD-like helicase C-terminal domain D1104_07285 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1104_07290 PF01924 Hydrogenase formation hypA family D1104_07295 PF02769 AIR synthase related protein, C-terminal domain D1104_07295 PF00586 AIR synthase related protein, N-terminal domain D1104_07300 PF00708 Acylphosphatase D1104_07300 PF07503 HypF finger D1104_07300 PF01300 Telomere recombination D1104_07300 PF17788 HypF Kae1-like domain D1104_07305 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D1104_07305 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D1104_07310 PF13247 4Fe-4S dicluster domain D1104_07315 PF03916 Polysulphide reductase, NrfD D1104_07320 PF00374 Nickel-dependent hydrogenase D1104_07325 PF01750 Hydrogenase maturation protease D1104_07330 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE D1104_07335 PF01455 HupF/HypC family D1104_07340 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D1104_07370 PF00271 Helicase conserved C-terminal domain D1104_07370 PF03461 TRCF domain D1104_07370 PF17757 UvrB interaction domain D1104_07370 PF02559 CarD-like/TRCF domain D1104_07370 PF00270 DEAD/DEAH box helicase D1104_07375 PF11940 Domain of unknown function (DUF3458) Ig-like fold D1104_07375 PF01433 Peptidase family M1 domain D1104_07375 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D1104_07380 PF02660 Glycerol-3-phosphate acyltransferase D1104_07385 PF02152 Dihydroneopterin aldolase D1104_07390 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1104_07390 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region D1104_07395 PF18075 FtsX extracellular domain D1104_07400 PF00005 ABC transporter D1104_07405 PF02881 SRP54-type protein, helical bundle domain D1104_07405 PF00448 SRP54-type protein, GTPase domain D1104_07415 PF04269 Protein of unknown function, DUF440 D1104_07420 PF01613 Flavin reductase like domain D1104_07425 PF09313 Domain of unknown function (DUF1971) D1104_07425 PF03848 Tellurite resistance protein TehB D1104_07430 PF00528 Binding-protein-dependent transport system inner membrane component D1104_07435 PF00528 Binding-protein-dependent transport system inner membrane component D1104_07440 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1104_07445 PF00005 ABC transporter D1104_07450 PF01161 Phosphatidylethanolamine-binding protein D1104_07455 PF01699 Sodium/calcium exchanger protein D1104_07460 PF01381 Helix-turn-helix D1104_07470 PF13098 Thioredoxin-like domain D1104_07470 PF11412 Disulphide bond corrector protein DsbC D1104_07470 PF02683 Cytochrome C biogenesis protein transmembrane region D1104_07475 PF04315 Elongation factor P hydroxylase D1104_07480 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D1104_07485 PF04348 LppC putative lipoprotein D1104_07490 PF02021 Uncharacterised protein family UPF0102 D1104_07495 PF13580 SIS domain D1104_07500 PF04972 BON domain D1104_07505 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1104_07505 PF01464 Transglycosylase SLT domain D1104_07525 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1104_07525 PF01578 Cytochrome C assembly protein D1104_07530 PF03100 CcmE D1104_07535 PF04995 Heme exporter protein D (CcmD) D1104_07540 PF01578 Cytochrome C assembly protein D1104_07545 PF03379 CcmB protein D1104_07550 PF00005 ABC transporter D1104_07555 PF00308 Bacterial dnaA protein D1104_07590 PF04277 Oxaloacetate decarboxylase, gamma chain D1104_07595 PF00364 Biotin-requiring enzyme D1104_07595 PF02436 Conserved carboxylase domain D1104_07595 PF00682 HMGL-like D1104_07600 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit D1104_07605 PF03831 PhnA domain D1104_07605 PF08274 PhnA Zinc-Ribbon D1104_07610 PF03150 Di-haem cytochrome c peroxidase D1104_07610 PF00034 Cytochrome c D1104_07610 PF14376 Haem-binding domain D1104_07615 PF02594 Uncharacterised ACR, YggU family COG1872 D1104_07620 PF02325 YGGT family D1104_07625 PF04320 Protein with unknown function (DUF469) D1104_07630 PF02390 Putative methyltransferase D1104_07635 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D1104_07635 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D1104_07640 PF02504 Fatty acid synthesis protein D1104_07645 PF01783 Ribosomal L32p protein family D1104_07650 PF02620 Large ribosomal RNA subunit accumulation protein YceD D1104_07655 PF01578 Cytochrome C assembly protein D1104_07660 PF01595 Cyclin M transmembrane N-terminal domain D1104_07660 PF03471 Transporter associated domain D1104_07660 PF00571 CBS domain D1104_07665 PF00209 Sodium:neurotransmitter symporter family D1104_07675 PF03830 PTS system sorbose subfamily IIB component D1104_07675 PF03610 PTS system fructose IIA component D1104_07680 PF03609 PTS system sorbose-specific iic component D1104_07685 PF03613 PTS system mannose/fructose/sorbose family IID component D1104_07690 PF06173 Protein of unknown function (DUF986) D1104_07695 PF01238 Phosphomannose isomerase type I D1104_07710 PF00664 ABC transporter transmembrane region D1104_07710 PF00005 ABC transporter D1104_07710 PF03412 Peptidase C39 family D1104_07715 PF08339 RTX C-terminal domain D1104_07715 PF02382 N-terminal domain in RTX protein D1104_07715 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1104_07720 PF02794 RTX toxin acyltransferase family D1104_07735 PF08402 TOBE domain D1104_07735 PF00005 ABC transporter D1104_07740 PF01225 Mur ligase family, catalytic domain D1104_07740 PF08245 Mur ligase middle domain D1104_07740 PF02875 Mur ligase family, glutamate ligase domain D1104_07745 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D1104_07755 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1104_07755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1104_07760 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D1104_07765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1104_07765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1104_07765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1104_07765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1104_07770 PF00291 Pyridoxal-phosphate dependent enzyme D1104_07770 PF00585 C-terminal regulatory domain of Threonine dehydratase D1104_07775 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1104_07780 PF00230 Major intrinsic protein D1104_07790 PF18389 TrmO C-terminal domain D1104_07790 PF01980 tRNA-methyltransferase O D1104_07795 PF01040 UbiA prenyltransferase family D1104_07800 PF01521 Iron-sulphur cluster biosynthesis D1104_07805 PF16363 GDP-mannose 4,6 dehydratase D1104_07810 PF00483 Nucleotidyl transferase D1104_07815 PF04321 RmlD substrate binding domain D1104_07820 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D1104_07825 PF01061 ABC-2 type transporter D1104_07830 PF00005 ABC transporter D1104_07855 PF00535 Glycosyl transferase family 2 D1104_07860 PF00535 Glycosyl transferase family 2 D1104_07865 PF02397 Bacterial sugar transferase D1104_07870 PF01165 Ribosomal protein S21 D1104_07875 PF10410 DnaB-helicase binding domain of primase D1104_07875 PF08278 DNA primase DnaG DnaB-binding D1104_07875 PF01807 CHC2 zinc finger D1104_07875 PF08275 DNA primase catalytic core, N-terminal domain D1104_07880 PF04546 Sigma-70, non-essential region D1104_07880 PF03979 Sigma-70 factor, region 1.1 D1104_07880 PF00140 Sigma-70 factor, region 1.2 D1104_07880 PF04542 Sigma-70 region 2 D1104_07880 PF04539 Sigma-70 region 3 D1104_07880 PF04545 Sigma-70, region 4 D1104_07885 PF00579 tRNA synthetases class I (W and Y) D1104_07885 PF01479 S4 domain D1104_07895 PF00773 RNB domain D1104_07895 PF00575 S1 RNA binding domain D1104_07895 PF08206 Ribonuclease B OB domain D1104_07895 PF08461 Ribonuclease R winged-helix domain D1104_07895 PF17876 Cold shock domain D1104_07900 PF00578 AhpC/TSA family D1104_07905 PF00440 Bacterial regulatory proteins, tetR family D1104_07910 PF03466 LysR substrate binding domain D1104_07910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_07915 PF00462 Glutaredoxin D1104_07915 PF08534 Redoxin D1104_07930 PF01297 Zinc-uptake complex component A periplasmic D1104_07935 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D1104_07940 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family D1104_07950 PF12111 Polyribonucleotide phosphorylase C terminal D1104_07950 PF10150 Ribonuclease E/G family D1104_07950 PF00575 S1 RNA binding domain D1104_07965 PF02525 Flavodoxin-like fold D1104_07970 PF13187 4Fe-4S dicluster domain D1104_07970 PF12838 4Fe-4S dicluster domain D1104_07980 PF10518 TAT (twin-arginine translocation) pathway signal sequence D1104_07980 PF00384 Molybdopterin oxidoreductase D1104_07980 PF01568 Molydopterin dinucleotide binding domain D1104_07980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1104_07985 PF12838 4Fe-4S dicluster domain D1104_07985 PF12800 4Fe-4S binding domain D1104_07990 PF12837 4Fe-4S binding domain D1104_07990 PF12801 4Fe-4S binding domain D1104_07995 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D1104_08000 PF03264 NapC/NirT cytochrome c family, N-terminal region D1104_08005 PF14849 YidC periplasmic domain D1104_08005 PF02096 60Kd inner membrane protein D1104_08010 PF03061 Thioesterase superfamily D1104_08015 PF01565 FAD binding domain D1104_08015 PF13183 4Fe-4S dicluster domain D1104_08015 PF02913 FAD linked oxidases, C-terminal domain D1104_08020 PF00691 OmpA family D1104_08020 PF01389 OmpA-like transmembrane domain D1104_08025 PF13407 Periplasmic binding protein domain D1104_08030 PF00005 ABC transporter D1104_08035 PF02653 Branched-chain amino acid transport system / permease component D1104_08055 PF06039 Malate:quinone oxidoreductase (Mqo) D1104_08060 PF00501 AMP-binding enzyme D1104_08065 PF00501 AMP-binding enzyme D1104_08070 PF00248 Aldo/keto reductase family D1104_08080 PF03222 Tryptophan/tyrosine permease family D1104_08090 PF02655 ATP-grasp domain D1104_08090 PF18419 ATP-grasp-like domain D1104_08090 PF04262 Glutamate-cysteine ligase D1104_08095 PF01420 Type I restriction modification DNA specificity domain D1104_08100 PF02899 Phage integrase, N-terminal SAM-like domain D1104_08100 PF00589 Phage integrase family D1104_08105 PF01420 Type I restriction modification DNA specificity domain D1104_08115 PF12161 HsdM N-terminal domain D1104_08115 PF02384 N-6 DNA Methylase D1104_08120 PF04851 Type III restriction enzyme, res subunit D1104_08120 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D1104_08120 PF00271 Helicase conserved C-terminal domain D1104_08120 PF08463 EcoEI R protein C-terminal D1104_08125 PF02666 Phosphatidylserine decarboxylase D1104_08135 PF08525 Opacity-associated protein A N-terminal motif D1104_08135 PF04225 Opacity-associated protein A LysM-like domain D1104_08145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1104_08150 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1104_08155 PF00164 Ribosomal protein S12/S23 D1104_08160 PF00177 Ribosomal protein S7p/S5e D1104_08165 PF14492 Elongation Factor G, domain II D1104_08165 PF00679 Elongation factor G C-terminus D1104_08165 PF03144 Elongation factor Tu domain 2 D1104_08165 PF00009 Elongation factor Tu GTP binding domain D1104_08165 PF03764 Elongation factor G, domain IV D1104_08170 PF03144 Elongation factor Tu domain 2 D1104_08170 PF00009 Elongation factor Tu GTP binding domain D1104_08170 PF03143 Elongation factor Tu C-terminal domain D1104_08190 PF08543 Phosphomethylpyrimidine kinase D1104_08200 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D1104_08205 PF07732 Multicopper oxidase D1104_08205 PF07731 Multicopper oxidase D1104_08210 PF01553 Acyltransferase D1104_08215 PF08534 Redoxin D1104_08220 PF10396 GTP-binding protein TrmE N-terminus D1104_08220 PF12631 MnmE helical domain D1104_08220 PF01926 50S ribosome-binding GTPase D1104_08225 PF05167 Uncharacterised ACR (DUF711) D1104_08235 PF17954 Quercetinase C-terminal cupin domain D1104_08235 PF02678 Pirin D1104_08240 PF00210 Ferritin-like domain D1104_08255 PF12805 FUSC-like inner membrane protein yccS D1104_08260 PF02142 MGS-like domain D1104_08265 PF14821 Threonine synthase N terminus D1104_08265 PF00291 Pyridoxal-phosphate dependent enzyme D1104_08275 PF00133 tRNA synthetases class I (I, L, M and V) D1104_08275 PF10458 Valyl tRNA synthetase tRNA binding arm D1104_08275 PF08264 Anticodon-binding domain of tRNA D1104_08285 PF13673 Acetyltransferase (GNAT) domain D1104_08290 PF04364 DNA polymerase III chi subunit, HolC D1104_08295 PF01476 LysM domain D1104_08300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1104_08300 PF05698 Bacterial trigger factor protein (TF) C-terminus D1104_08300 PF05697 Bacterial trigger factor protein (TF) D1104_08305 PF00581 Rhodanese-like domain D1104_08310 PF02556 Preprotein translocase subunit SecB D1104_08315 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D1104_08315 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D1104_08320 PF00132 Bacterial transferase hexapeptide (six repeats) D1104_08320 PF06426 Serine acetyltransferase, N-terminal D1104_08325 PF03143 Elongation factor Tu C-terminal domain D1104_08325 PF03144 Elongation factor Tu domain 2 D1104_08325 PF00009 Elongation factor Tu GTP binding domain D1104_08350 PF00485 Phosphoribulokinase / Uridine kinase family D1104_08355 PF08534 Redoxin D1104_08360 PF03918 Cytochrome C biogenesis protein D1104_08365 PF03918 Cytochrome C biogenesis protein D1104_08370 PF00994 Probable molybdopterin binding domain D1104_08375 PF00543 Nitrogen regulatory protein P-II D1104_08380 PF01252 Signal peptidase (SPase) II D1104_08385 PF02401 LytB protein D1104_08390 PF03937 Flavinator of succinate dehydrogenase D1104_08400 PF04055 Radical SAM superfamily D1104_08405 PF02798 Glutathione S-transferase, N-terminal domain D1104_08405 PF00043 Glutathione S-transferase, C-terminal domain D1104_08410 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D1104_08410 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D1104_08420 PF02313 Fumarate reductase subunit D D1104_08425 PF02300 Fumarate reductase subunit C D1104_08430 PF13183 4Fe-4S dicluster domain D1104_08430 PF13085 2Fe-2S iron-sulfur cluster binding domain D1104_08435 PF02910 Fumarate reductase flavoprotein C-term D1104_08435 PF00890 FAD binding domain D1104_08440 PF00152 tRNA synthetases class II (D, K and N) D1104_08445 PF01678 Diaminopimelate epimerase D1104_08450 PF03605 Anaerobic c4-dicarboxylate membrane transporter D1104_08455 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D1104_08465 PF03702 Anhydro-N-acetylmuramic acid kinase D1104_08470 PF01380 SIS domain D1104_08490 PF01523 Putative modulator of DNA gyrase D1104_08495 PF11734 TilS substrate C-terminal domain D1104_08495 PF01171 PP-loop family D1104_08495 PF09179 TilS substrate binding domain D1104_08505 PF02899 Phage integrase, N-terminal SAM-like domain D1104_08505 PF00589 Phage integrase family D1104_08560 PF03808 Glycosyl transferase WecB/TagA/CpsF family D1104_08565 PF06899 WzyE protein, O-antigen assembly polymerase D1104_08570 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 D1104_08575 PF03063 Prismane/CO dehydrogenase family D1104_08580 PF00175 Oxidoreductase NAD-binding domain D1104_08580 PF00111 2Fe-2S iron-sulfur cluster binding domain D1104_08580 PF00970 Oxidoreductase FAD-binding domain D1104_08585 PF01943 Polysaccharide biosynthesis protein D1104_08590 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D1104_08600 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D1104_08600 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D1104_08600 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D1104_08605 PF02350 UDP-N-acetylglucosamine 2-epimerase D1104_08615 PF00953 Glycosyl transferase family 4 D1104_08620 PF00202 Aminotransferase class-III D1104_08630 PF03023 Lipid II flippase MurJ D1104_08635 PF01649 Ribosomal protein S20 D1104_08640 PF02254 TrkA-N domain D1104_08640 PF02080 TrkA-C domain D1104_08645 PF01029 NusB family D1104_08645 PF01189 16S rRNA methyltransferase RsmB/F D1104_08650 PF09106 Elongation factor SelB, winged helix D1104_08650 PF00009 Elongation factor Tu GTP binding domain D1104_08650 PF09107 Elongation factor SelB, winged helix D1104_08650 PF03144 Elongation factor Tu domain 2 D1104_08655 PF12390 Selenocysteine synthase N terminal D1104_08655 PF03841 L-seryl-tRNA selenium transferase D1104_08665 PF00258 Flavodoxin D1104_08675 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1104_08675 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1104_08690 PF00593 TonB dependent receptor D1104_08690 PF07715 TonB-dependent Receptor Plug Domain D1104_08695 PF17483 C-lobe handle domain of Tf-binding protein B D1104_08695 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1104_08695 PF17484 N-Lobe handle Tf-binding protein B D1104_08700 PF02472 Biopolymer transport protein ExbD/TolR D1104_08705 PF01618 MotA/TolQ/ExbB proton channel family D1104_08715 PF03956 Lysine exporter LysO D1104_08725 PF02615 Malate/L-lactate dehydrogenase D1104_08735 PF17311 Family of unknown function (DUF5358) D1104_08740 PF01501 Glycosyl transferase family 8 D1104_08750 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D1104_08760 PF01467 Cytidylyltransferase-like D1104_08770 PF02563 Polysaccharide biosynthesis/export protein D1104_08780 PF01061 ABC-2 type transporter D1104_08785 PF00005 ABC transporter D1104_08790 PF00005 ABC transporter D1104_08795 PF02911 Formyl transferase, C-terminal domain D1104_08795 PF00551 Formyl transferase D1104_08805 PF01205 Uncharacterized protein family UPF0029 D1104_08805 PF09186 Domain of unknown function (DUF1949) D1104_08810 PF02386 Cation transport protein D1104_08815 PF12724 Flavodoxin domain D1104_08820 PF01741 Large-conductance mechanosensitive channel, MscL D1104_08825 PF04055 Radical SAM superfamily D1104_08830 PF03099 Biotin/lipoate A/B protein ligase family D1104_08835 PF04359 Protein of unknown function (DUF493) D1104_08840 PF00768 D-alanyl-D-alanine carboxypeptidase D1104_08840 PF07943 Penicillin-binding protein 5, C-terminal domain D1104_08845 PF03330 Lytic transglycolase D1104_08850 PF01098 Cell cycle protein D1104_08855 PF03717 Penicillin-binding Protein dimerisation domain D1104_08855 PF00905 Penicillin binding protein transpeptidase domain D1104_08860 PF02590 Predicted SPOUT methyltransferase D1104_08870 PF05192 MutS domain III D1104_08870 PF00488 MutS domain V D1104_08870 PF05190 MutS family domain IV D1104_08870 PF05188 MutS domain II D1104_08870 PF01624 MutS domain I D1104_08875 PF00005 ABC transporter D1104_08880 PF00528 Binding-protein-dependent transport system inner membrane component D1104_08885 PF03313 Serine dehydratase alpha chain D1104_08890 PF01814 Hemerythrin HHE cation binding domain D1104_08890 PF04405 Domain of Unknown function (DUF542) D1104_08895 PF00893 Small Multidrug Resistance protein D1104_08900 PF04175 Protein of unknown function (DUF406) D1104_08915 PF01774 UreD urease accessory protein D1104_08920 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1104_08925 PF01730 UreF D1104_08930 PF05194 UreE urease accessory protein, C-terminal domain D1104_08930 PF02814 UreE urease accessory protein, N-terminal domain D1104_08940 PF01979 Amidohydrolase family D1104_08940 PF00449 Urease alpha-subunit, N-terminal domain D1104_08945 PF00699 Urease beta subunit D1104_08950 PF00547 Urease, gamma subunit D1104_08960 PF00005 ABC transporter D1104_08970 PF01891 Cobalt uptake substrate-specific transmembrane region D1104_08980 PF10670 Domain of unknown function (DUF4198) D1104_08985 PF03466 LysR substrate binding domain D1104_08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_08995 PF03600 Citrate transporter D1104_08995 PF02080 TrkA-C domain D1104_09000 PF05068 Mannitol repressor D1104_09005 PF08125 Mannitol dehydrogenase C-terminal domain D1104_09005 PF01232 Mannitol dehydrogenase Rossmann domain D1104_09010 PF02378 Phosphotransferase system, EIIC D1104_09010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D1104_09010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1104_09015 PF01380 SIS domain D1104_09020 PF08220 DeoR-like helix-turn-helix domain D1104_09020 PF00455 DeoR C terminal sensor domain D1104_09035 PF18254 HMW1 domain 2 D1104_09035 PF18071 HMW1C N-terminal D1104_09040 PF00919 Uncharacterized protein family UPF0004 D1104_09040 PF04055 Radical SAM superfamily D1104_09040 PF18693 TRAM domain D1104_09045 PF01048 Phosphorylase superfamily D1104_09055 PF04102 SlyX D1104_09060 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D1104_09060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1104_09065 PF08348 YheO-like PAS domain D1104_09065 PF13309 HTH domain D1104_09070 PF02635 DsrE/DsrF-like family D1104_09075 PF02635 DsrE/DsrF-like family D1104_09080 PF04077 DsrH like protein D1104_09105 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D1104_09110 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1104_09110 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1104_09115 PF00231 ATP synthase D1104_09120 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1104_09120 PF00306 ATP synthase alpha/beta chain, C terminal domain D1104_09120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1104_09125 PF00213 ATP synthase delta (OSCP) subunit D1104_09130 PF00430 ATP synthase B/B' CF(0) D1104_09135 PF00137 ATP synthase subunit C D1104_09140 PF00119 ATP synthase A chain D1104_09150 PF02527 rRNA small subunit methyltransferase G D1104_09155 PF13932 GidA associated domain D1104_09155 PF01134 Glucose inhibited division protein A D1104_09165 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1104_09170 PF02810 SEC-C motif D1104_09180 PF03613 PTS system mannose/fructose/sorbose family IID component D1104_09185 PF03609 PTS system sorbose-specific iic component D1104_09190 PF03610 PTS system fructose IIA component D1104_09190 PF03830 PTS system sorbose subfamily IIB component D1104_09195 PF02447 GntP family permease D1104_09200 PF01202 Shikimate kinase D1104_09205 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D1104_09205 PF00356 Bacterial regulatory proteins, lacI family D1104_09210 PF00356 Bacterial regulatory proteins, lacI family D1104_09215 PF05025 RbsD / FucU transport protein family D1104_09220 PF00005 ABC transporter D1104_09225 PF02653 Branched-chain amino acid transport system / permease component D1104_09230 PF13407 Periplasmic binding protein domain D1104_09235 PF00294 pfkB family carbohydrate kinase D1104_09240 PF01568 Molydopterin dinucleotide binding domain D1104_09240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1104_09240 PF00384 Molybdopterin oxidoreductase D1104_09245 PF12800 4Fe-4S binding domain D1104_09245 PF13247 4Fe-4S dicluster domain D1104_09250 PF04976 DMSO reductase anchor subunit (DmsC) D1104_09255 PF02613 Nitrate reductase delta subunit D1104_09260 PF12838 4Fe-4S dicluster domain D1104_09260 PF00037 4Fe-4S binding domain D1104_09290 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D1104_09290 PF02769 AIR synthase related protein, C-terminal domain D1104_09290 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D1104_09295 PF00455 DeoR C terminal sensor domain D1104_09295 PF08220 DeoR-like helix-turn-helix domain D1104_09300 PF02952 L-fucose isomerase, C-terminal domain D1104_09300 PF07881 L-fucose isomerase, first N-terminal domain D1104_09300 PF07882 L-fucose isomerase, second N-terminal domain D1104_09305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1104_09305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1104_09310 PF05025 RbsD / FucU transport protein family D1104_09315 PF00596 Class II Aldolase and Adducin N-terminal domain D1104_09320 PF07690 Major Facilitator Superfamily D1104_09325 PF00465 Iron-containing alcohol dehydrogenase D1104_09330 PF07274 Protein of unknown function (DUF1440) D1104_09335 PF00528 Binding-protein-dependent transport system inner membrane component D1104_09340 PF00528 Binding-protein-dependent transport system inner membrane component D1104_09345 PF00005 ABC transporter D1104_09350 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1104_09355 PF05159 Capsule polysaccharide biosynthesis protein D1104_09360 PF05159 Capsule polysaccharide biosynthesis protein D1104_09370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1104_09375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1104_09380 PF03611 PTS system sugar-specific permease component D1104_09390 PF08220 DeoR-like helix-turn-helix domain D1104_09390 PF00455 DeoR C terminal sensor domain D1104_09395 PF01261 Xylose isomerase-like TIM barrel D1104_09400 PF00596 Class II Aldolase and Adducin N-terminal domain D1104_09405 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D1104_09405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1104_09425 PF04575 Protein of unknown function (DUF560) D1104_09430 PF01370 NAD dependent epimerase/dehydratase family D1104_09435 PF01327 Polypeptide deformylase D1104_09440 PF02481 DNA recombination-mediator protein A D1104_09440 PF17782 DprA winged helix domain D1104_09445 PF03169 OPT oligopeptide transporter protein D1104_09450 PF03611 PTS system sugar-specific permease component D1104_09460 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D1104_09465 PF00467 KOW motif D1104_09465 PF02357 Transcription termination factor nusG D1104_09470 PF00298 Ribosomal protein L11, RNA binding domain D1104_09470 PF03946 Ribosomal protein L11, N-terminal domain D1104_09475 PF00687 Ribosomal protein L1p/L10e family D1104_09480 PF00466 Ribosomal protein L10 D1104_09485 PF16320 Ribosomal protein L7/L12 dimerisation domain D1104_09485 PF00542 Ribosomal protein L7/L12 C-terminal domain D1104_09530 PF04563 RNA polymerase beta subunit D1104_09530 PF04561 RNA polymerase Rpb2, domain 2 D1104_09530 PF04565 RNA polymerase Rpb2, domain 3 D1104_09530 PF10385 RNA polymerase beta subunit external 1 domain D1104_09530 PF00562 RNA polymerase Rpb2, domain 6 D1104_09530 PF04560 RNA polymerase Rpb2, domain 7 D1104_09535 PF04983 RNA polymerase Rpb1, domain 3 D1104_09535 PF05000 RNA polymerase Rpb1, domain 4 D1104_09535 PF04998 RNA polymerase Rpb1, domain 5 D1104_09535 PF00623 RNA polymerase Rpb1, domain 2 D1104_09535 PF04997 RNA polymerase Rpb1, domain 1 D1104_09545 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D1104_09550 PF01850 PIN domain D1104_09565 PF00004 ATPase family associated with various cellular activities (AAA) D1104_09565 PF07724 AAA domain (Cdc48 subfamily) D1104_09565 PF10431 C-terminal, D2-small domain, of ClpB protein D1104_09570 PF00227 Proteasome subunit D1104_09575 PF03749 Sugar fermentation stimulation protein RE domain D1104_09575 PF17746 SfsA N-terminal OB domain D1104_09580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1104_09585 PF14815 NUDIX domain D1104_09585 PF00730 HhH-GPD superfamily base excision DNA repair protein D1104_09590 PF04362 Bacterial Fe(2+) trafficking D1104_09595 PF01464 Transglycosylase SLT domain D1104_09595 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D1104_09620 PF00448 SRP54-type protein, GTPase domain D1104_09620 PF02978 Signal peptide binding domain D1104_09620 PF02881 SRP54-type protein, helical bundle domain D1104_09625 PF00149 Calcineurin-like phosphoesterase D1104_09625 PF02872 5'-nucleotidase, C-terminal domain D1104_09630 PF01494 FAD binding domain D1104_09635 PF13335 Magnesium chelatase, subunit ChlI C-terminal D1104_09635 PF01078 Magnesium chelatase, subunit ChlI D1104_09645 PF00561 alpha/beta hydrolase fold D1104_09650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1104_09650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1104_09650 PF16582 Middle domain of thiamine pyrophosphate D1104_09655 PF13472 GDSL-like Lipase/Acylhydrolase family D1104_09655 PF02348 Cytidylyltransferase D1104_09660 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase D1104_09665 PF00480 ROK family D1104_09670 PF00701 Dihydrodipicolinate synthetase family D1104_09675 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1104_09680 PF01979 Amidohydrolase family D1104_09685 PF10415 Fumarase C C-terminus D1104_09685 PF00206 Lyase D1104_09695 PF00338 Ribosomal protein S10p/S20e D1104_09700 PF00297 Ribosomal protein L3 D1104_09705 PF00573 Ribosomal protein L4/L1 family D1104_09710 PF00276 Ribosomal protein L23 D1104_09715 PF00181 Ribosomal Proteins L2, RNA binding domain D1104_09715 PF03947 Ribosomal Proteins L2, C-terminal domain D1104_09720 PF00203 Ribosomal protein S19 D1104_09725 PF00237 Ribosomal protein L22p/L17e D1104_09730 PF00189 Ribosomal protein S3, C-terminal domain D1104_09730 PF07650 KH domain D1104_09735 PF00252 Ribosomal protein L16p/L10e D1104_09740 PF00831 Ribosomal L29 protein D1104_09745 PF00366 Ribosomal protein S17 D1104_09750 PF00238 Ribosomal protein L14p/L23e D1104_09755 PF00467 KOW motif D1104_09755 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D1104_09760 PF00281 Ribosomal protein L5 D1104_09760 PF00673 ribosomal L5P family C-terminus D1104_09765 PF00253 Ribosomal protein S14p/S29e D1104_09770 PF00410 Ribosomal protein S8 D1104_09775 PF00347 Ribosomal protein L6 D1104_09780 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D1104_09785 PF03719 Ribosomal protein S5, C-terminal domain D1104_09785 PF00333 Ribosomal protein S5, N-terminal domain D1104_09790 PF00327 Ribosomal protein L30p/L7e D1104_09795 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D1104_09800 PF00344 SecY translocase D1104_09805 PF00444 Ribosomal protein L36 D1104_09810 PF00416 Ribosomal protein S13/S18 D1104_09815 PF00411 Ribosomal protein S11 D1104_09820 PF01479 S4 domain D1104_09820 PF00163 Ribosomal protein S4/S9 N-terminal domain D1104_09825 PF01000 RNA polymerase Rpb3/RpoA insert domain D1104_09825 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D1104_09825 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D1104_09830 PF01196 Ribosomal protein L17 D1104_09835 PF00886 Ribosomal protein S16 D1104_09840 PF05239 PRC-barrel domain D1104_09840 PF01782 RimM N-terminal domain D1104_09845 PF01746 tRNA (Guanine-1)-methyltransferase D1104_09850 PF01245 Ribosomal protein L19 D1104_09855 PF08007 Cupin superfamily protein D1104_09860 PF01497 Periplasmic binding protein D1104_09865 PF01032 FecCD transport family D1104_09870 PF00005 ABC transporter D1104_09875 PF00127 Copper binding proteins, plastocyanin/azurin family D1104_09890 PF02613 Nitrate reductase delta subunit D1104_09895 PF00384 Molybdopterin oxidoreductase D1104_09895 PF18364 Molybdopterin oxidoreductase N-terminal domain D1104_09895 PF01568 Molydopterin dinucleotide binding domain D1104_09905 PF02091 Glycyl-tRNA synthetase alpha subunit D1104_09910 PF04480 Protein of unknown function (DUF559) D1104_09920 PF02092 Glycyl-tRNA synthetase beta subunit D1104_09920 PF05746 DALR anticodon binding domain D1104_09925 PF17347 Family of unknown function (DUF5377) D1104_09930 PF00589 Phage integrase family D1104_09930 PF02899 Phage integrase, N-terminal SAM-like domain D1104_09935 PF04304 Protein of unknown function (DUF454) D1104_09940 PF00535 Glycosyl transferase family 2 D1104_09945 PF00149 Calcineurin-like phosphoesterase D1104_09950 PF07509 Protein of unknown function (DUF1523) D1104_09955 PF01026 TatD related DNase D1104_09970 PF02687 FtsX-like permease family D1104_09970 PF12704 MacB-like periplasmic core domain D1104_09970 PF00005 ABC transporter D1104_09975 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1104_09980 PF06629 MltA-interacting protein MipA D1104_09985 PF09115 DNA polymerase III, delta subunit, C terminal D1104_09990 PF02223 Thymidylate kinase D1104_09995 PF02618 YceG-like family D1104_10015 PF00550 Phosphopantetheine attachment site D1104_10020 PF00834 Ribulose-phosphate 3 epimerase family D1104_10025 PF01197 Ribosomal protein L31 D1104_10030 PF00444 Ribosomal protein L36 D1104_10035 PF00912 Transglycosylase D1104_10035 PF00905 Penicillin binding protein transpeptidase domain D1104_10035 PF14814 Bifunctional transglycosylase second domain D1104_10040 PF00378 Enoyl-CoA hydratase/isomerase D1104_10045 PF04607 Region found in RelA / SpoT proteins D1104_10045 PF13291 ACT domain D1104_10045 PF02824 TGS domain D1104_10050 PF01192 RNA polymerase Rpb6 D1104_10055 PF17191 RecG wedge domain D1104_10055 PF00271 Helicase conserved C-terminal domain D1104_10055 PF00270 DEAD/DEAH box helicase D1104_10070 PF03129 Anticodon binding domain D1104_10070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1104_10070 PF04073 Aminoacyl-tRNA editing domain D1104_10080 PF04542 Sigma-70 region 2 D1104_10080 PF08281 Sigma-70, region 4 D1104_10085 PF00174 Oxidoreductase molybdopterin binding domain D1104_10090 PF01794 Ferric reductase like transmembrane component D1104_10095 PF04545 Sigma-70, region 4 D1104_10095 PF00140 Sigma-70 factor, region 1.2 D1104_10095 PF04542 Sigma-70 region 2 D1104_10100 PF07690 Major Facilitator Superfamily D1104_10120 PF03590 Aspartate-ammonia ligase D1104_10125 PF01037 Lrp/AsnC ligand binding domain D1104_10125 PF13404 AsnC-type helix-turn-helix domain D1104_10130 PF01048 Phosphorylase superfamily D1104_10135 PF04345 Chorismate lyase D1104_10140 PF01177 Asp/Glu/Hydantoin racemase D1104_10170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D1104_10170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D1104_10175 PF00667 FAD binding domain D1104_10175 PF00258 Flavodoxin D1104_10175 PF00175 Oxidoreductase NAD-binding domain D1104_10180 PF00009 Elongation factor Tu GTP binding domain D1104_10185 PF01507 Phosphoadenosine phosphosulfate reductase family D1104_10190 PF01507 Phosphoadenosine phosphosulfate reductase family D1104_10195 PF14824 Sirohaem biosynthesis protein central D1104_10195 PF10414 Sirohaem synthase dimerisation region D1104_10195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D1104_10205 PF00528 Binding-protein-dependent transport system inner membrane component D1104_10210 PF00528 Binding-protein-dependent transport system inner membrane component D1104_10215 PF00005 ABC transporter D1104_10215 PF17850 CysA C-terminal regulatory domain D1104_10215 PF12857 TOBE-like domain D1104_10220 PF01070 FMN-dependent dehydrogenase D1104_10225 PF08279 HTH domain D1104_10225 PF03099 Biotin/lipoate A/B protein ligase family D1104_10225 PF02237 Biotin protein ligase C terminal domain D1104_10230 PF01565 FAD binding domain D1104_10230 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D1104_10235 PF01389 OmpA-like transmembrane domain D1104_10235 PF00691 OmpA family D1104_10240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D1104_10240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D1104_10245 PF04403 Paraquat-inducible protein A D1104_10250 PF01841 Transglutaminase-like superfamily D1104_10260 PF00403 Heavy-metal-associated domain D1104_10265 PF00465 Iron-containing alcohol dehydrogenase D1104_10270 PF03466 LysR substrate binding domain D1104_10270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1104_10275 PF00132 Bacterial transferase hexapeptide (six repeats) D1104_10275 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D1104_10275 PF14602 Hexapeptide repeat of succinyl-transferase D1104_10280 PF01220 Dehydroquinase class II D1104_10285 PF04488 Glycosyltransferase sugar-binding region containing DXD motif D1104_10290 PF00364 Biotin-requiring enzyme D1104_10295 PF02785 Biotin carboxylase C-terminal domain D1104_10295 PF00289 Biotin carboxylase, N-terminal domain D1104_10295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1104_10300 PF03205 Molybdopterin guanine dinucleotide synthesis protein B D1104_10305 PF06288 Protein of unknown function (DUF1040) D1104_10310 PF01323 DSBA-like thioredoxin domain D1104_10320 PF05036 Sporulation related domain D1104_10320 PF05036 Sporulation related domain D1104_10325 PF04445 Putative SAM-dependent methyltransferase D1104_10330 PF02557 D-alanyl-D-alanine carboxypeptidase D1104_10335 PF07687 Peptidase dimerisation domain D1104_10335 PF01546 Peptidase family M20/M25/M40 D1104_10340 PF03960 ArsC family D1104_10350 PF00809 Pterin binding enzyme D1104_10355 PF00849 RNA pseudouridylate synthase D1104_10355 PF01479 S4 domain D1104_10365 PF00924 Mechanosensitive ion channel D1104_10365 PF05552 Conserved TM helix D1104_10370 PF02785 Biotin carboxylase C-terminal domain D1104_10370 PF00289 Biotin carboxylase, N-terminal domain D1104_10370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1104_10380 PF00675 Insulinase (Peptidase family M16) D1104_10380 PF05193 Peptidase M16 inactive domain D1104_10380 PF16187 Middle or third domain of peptidase_M16 D1104_10385 PF17946 RecC C-terminal domain D1104_10410 PF07977 FabA-like domain D1104_10415 PF05362 Lon protease (S16) C-terminal proteolytic domain D1104_10415 PF13654 AAA domain D1104_10420 PF06303 MatP N-terminal domain D1104_10420 PF17414 MatP C-terminal ribbon-helix-helix domain D1104_10425 PF00579 tRNA synthetases class I (W and Y) D1104_10430 PF13419 Haloacid dehalogenase-like hydrolase D1104_10440 PF01790 Prolipoprotein diacylglyceryl transferase D1104_10445 PF01925 Sulfite exporter TauE/SafE D1104_10450 PF00293 NUDIX domain D1104_10460 PF00719 Inorganic pyrophosphatase D1104_10465 PF05175 Methyltransferase small domain D1104_10470 PF03737 Aldolase/RraA D1104_10475 PF01226 Formate/nitrite transporter D1104_10495 PF00684 DnaJ central domain D1104_10495 PF01556 DnaJ C terminal domain D1104_10495 PF00226 DnaJ domain D1104_10500 PF00012 Hsp70 protein D1104_10505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1104_10505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1104_10515 PF13407 Periplasmic binding protein domain D1104_10520 PF00005 ABC transporter D1104_10525 PF02653 Branched-chain amino acid transport system / permease component D1104_10530 PF12833 Helix-turn-helix domain D1104_10535 PF01431 Peptidase family M13 D1104_10535 PF05649 Peptidase family M13 D1104_10540 PF10571 Uncharacterised protein family UPF0547 D1104_10545 PF00474 Sodium:solute symporter family D1104_10550 PF06196 Protein of unknown function (DUF997) D1104_10555 PF01340 Met Apo-repressor, MetJ D1104_10560 PF04333 MlaA lipoprotein D1104_10565 PF01263 Aldose 1-epimerase D1104_10580 PF14883 Hypothetical glycosyl hydrolase family 13 D1104_10580 PF01522 Polysaccharide deacetylase D1104_10585 PF00535 Glycosyl transferase family 2 D1104_10595 PF00121 Triosephosphate isomerase D1104_10600 PF01142 tRNA pseudouridine synthase D (TruD) D1104_10605 PF01975 Survival protein SurE D1104_10610 PF09335 SNARE associated Golgi protein D1104_10625 PF01551 Peptidase family M23 D1104_10625 PF01476 LysM domain D1104_10630 PF03352 Methyladenine glycosylase D1104_10640 PF07670 Nucleoside recognition D1104_10645 PF07670 Nucleoside recognition D1104_10650 PF00762 Ferrochelatase D1104_10655 PF00468 Ribosomal protein L34 D1104_10660 PF00825 Ribonuclease P D1104_10665 PF01809 Putative membrane protein insertion efficiency factor D1104_10670 PF03951 Glutamine synthetase, beta-Grasp domain D1104_10670 PF00120 Glutamine synthetase, catalytic domain D1104_10675 PF00149 Calcineurin-like phosphoesterase D1104_10680 PF00293 NUDIX domain D1104_10685 PF06146 Phosphate-starvation-inducible E D1104_10690 PF01648 4'-phosphopantetheinyl transferase superfamily D1104_10695 PF00892 EamA-like transporter family D1104_10700 PF06965 Na+/H+ antiporter 1 D1104_10710 PF02580 D-Tyr-tRNA(Tyr) deacylase D1104_10715 PF03631 Virulence factor BrkB D1104_10720 PF00171 Aldehyde dehydrogenase family D1104_10740 PF01119 DNA mismatch repair protein, C-terminal domain D1104_10740 PF08676 MutL C terminal dimerisation domain D1104_10745 PF00107 Zinc-binding dehydrogenase D1104_10745 PF08240 Alcohol dehydrogenase GroES-like domain D1104_10755 PF17209 Hfq protein D1104_10760 PF16360 GTP-binding GTPase Middle Region D1104_10760 PF13167 GTP-binding GTPase N-terminal D1104_10760 PF01926 50S ribosome-binding GTPase D1104_10765 PF03641 Possible lysine decarboxylase D1104_10770 PF03819 MazG nucleotide pyrophosphohydrolase domain D1104_10775 PF00027 Cyclic nucleotide-binding domain D1104_10775 PF13545 Crp-like helix-turn-helix domain D1104_10780 PF06794 Uncharacterised protein family (UPF0270) D1104_10785 PF00440 Bacterial regulatory proteins, tetR family D1104_10790 PF00692 dUTPase D1104_10795 PF02441 Flavoprotein D1104_10795 PF04127 DNA / pantothenate metabolism flavoprotein D1104_10800 PF04002 RadC-like JAB domain D1104_10805 PF00830 Ribosomal L28 family D1104_10810 PF00471 Ribosomal protein L33 D1104_10820 PF00202 Aminotransferase class-III D1104_10825 PF00282 Pyridoxal-dependent decarboxylase conserved domain D1104_10830 PF01206 Sulfurtransferase TusA D1104_10835 PF04143 Sulphur transport D1104_10840 PF04219 Protein of unknown function, DUF D1104_10845 PF05958 tRNA (Uracil-5-)-methyltransferase D1104_10860 PF01544 CorA-like Mg2+ transporter protein D1104_10865 PF01209 ubiE/COQ5 methyltransferase family D1104_10875 PF03109 ABC1 family D1104_10880 PF02416 mttA/Hcf106 family D1104_10890 PF00902 Sec-independent protein translocase protein (TatC) D1104_10895 PF00490 Delta-aminolevulinic acid dehydratase D1104_10905 PF06827 Zinc finger found in FPG and IleRS D1104_10905 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D1104_10905 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D1104_10910 PF05525 Branched-chain amino acid transport protein D1104_10920 PF00698 Acyl transferase domain D1104_10925 PF02677 Epoxyqueuosine reductase QueH D1104_10930 PF00348 Polyprenyl synthetase D1104_10940 PF03358 NADPH-dependent FMN reductase D1104_10945 PF07681 DoxX D1104_10950 PF00829 Ribosomal prokaryotic L21 protein D1104_10955 PF01016 Ribosomal L27 protein D1104_10960 PF00892 EamA-like transporter family D1104_10965 PF04575 Protein of unknown function (DUF560) D1104_10970 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1104_10975 PF00156 Phosphoribosyl transferase domain D1104_10980 PF08468 Methyltransferase small domain N-terminal D1104_10980 PF05175 Methyltransferase small domain D1104_10990 PF00583 Acetyltransferase (GNAT) family D1104_10995 PF00271 Helicase conserved C-terminal domain D1104_10995 PF00270 DEAD/DEAH box helicase D1104_11000 PF01243 Pyridoxamine 5'-phosphate oxidase D1104_11000 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D1104_11005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1104_11010 PF00171 Aldehyde dehydrogenase family D1104_11015 PF01184 GPR1/FUN34/yaaH family D1104_11020 PF00005 ABC transporter D1104_11030 PF01032 FecCD transport family D1104_11035 PF07715 TonB-dependent Receptor Plug Domain D1104_11035 PF00593 TonB dependent receptor D1104_11045 PF01259 SAICAR synthetase D1104_11050 PF08029 HisG, C-terminal domain D1104_11050 PF01634 ATP phosphoribosyltransferase D1104_11055 PF00815 Histidinol dehydrogenase D1104_11060 PF00155 Aminotransferase class I and II D1104_11070 PF00475 Imidazoleglycerol-phosphate dehydratase D1104_11080 PF00117 Glutamine amidotransferase class-I D1104_11085 PF00977 Histidine biosynthesis protein D1104_11090 PF00977 Histidine biosynthesis protein D1104_11095 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D1104_11095 PF01502 Phosphoribosyl-AMP cyclohydrolase D1104_11100 PF02592 Putative vitamin uptake transporter D1104_11105 PF00557 Metallopeptidase family M24 D1104_11115 PF00356 Bacterial regulatory proteins, lacI family D1104_11115 PF13407 Periplasmic binding protein domain D1104_11120 PF08244 Glycosyl hydrolases family 32 C terminal D1104_11120 PF00251 Glycosyl hydrolases family 32 N-terminal domain D1104_11125 PF00294 pfkB family carbohydrate kinase D1104_11130 PF07732 Multicopper oxidase D1104_11135 PF02687 FtsX-like permease family D1104_11135 PF12704 MacB-like periplasmic core domain D1104_11140 PF00005 ABC transporter D1104_11145 PF12704 MacB-like periplasmic core domain D1104_11145 PF02687 FtsX-like permease family D1104_11150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1104_11150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1104_11155 PF00793 DAHP synthetase I family D1104_11160 PF13369 Transglutaminase-like superfamily D1104_11165 PF13847 Methyltransferase domain D1104_11165 PF17827 PrmC N-terminal domain D1104_11175 PF03462 PCRF domain D1104_11175 PF00472 RF-1 domain