locus-tag class description APJL_0001 PF08299 Bacterial dnaA protein helix-turn-helix APJL_0001 PF11638 DnaA N-terminal domain APJL_0001 PF00308 Bacterial dnaA protein APJL_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain APJL_0002 PF02767 DNA polymerase III beta subunit, central domain APJL_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain APJL_0003 PF02463 RecF/RecN/SMC N terminal domain APJL_0004 PF00080 Copper/zinc superoxide dismutase (SODC) APJL_0005 PF01118 Semialdehyde dehydrogenase, NAD binding domain APJL_0005 PF02774 Semialdehyde dehydrogenase, dimerisation domain APJL_0008 PF02684 Lipid-A-disaccharide synthetase APJL_0009 PF01343 Peptidase family S49 APJL_0009 PF08496 Peptidase family S49 N-terminal APJL_0010 PF02381 MraZ protein, putative antitoxin-like APJL_0011 PF01795 MraW methylase family APJL_0012 PF04999 Cell division protein FtsL APJL_0013 PF00905 Penicillin binding protein transpeptidase domain APJL_0013 PF03717 Penicillin-binding Protein dimerisation domain APJL_0014 PF08245 Mur ligase middle domain APJL_0014 PF01225 Mur ligase family, catalytic domain APJL_0014 PF02875 Mur ligase family, glutamate ligase domain APJL_0015 PF01225 Mur ligase family, catalytic domain APJL_0015 PF02875 Mur ligase family, glutamate ligase domain APJL_0015 PF08245 Mur ligase middle domain APJL_0016 PF00953 Glycosyl transferase family 4 APJL_0016 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APJL_0017 PF02875 Mur ligase family, glutamate ligase domain APJL_0017 PF08245 Mur ligase middle domain APJL_0018 PF01098 Cell cycle protein APJL_0019 PF03033 Glycosyltransferase family 28 N-terminal domain APJL_0019 PF04101 Glycosyltransferase family 28 C-terminal domain APJL_0020 PF08245 Mur ligase middle domain APJL_0020 PF02875 Mur ligase family, glutamate ligase domain APJL_0020 PF01225 Mur ligase family, catalytic domain APJL_0021 PF01820 D-ala D-ala ligase N-terminus APJL_0021 PF07478 D-ala D-ala ligase C-terminus APJL_0022 PF03799 Cell division protein FtsQ APJL_0022 PF08478 POTRA domain, FtsQ-type APJL_0023 PF02491 SHS2 domain inserted in FTSA APJL_0024 PF12327 FtsZ family, C-terminal domain APJL_0024 PF00091 Tubulin/FtsZ family, GTPase domain APJL_0025 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APJL_0026 PF02463 RecF/RecN/SMC N terminal domain APJL_0027 PF00005 ABC transporter APJL_0027 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APJL_0028 PF12911 N-terminal TM domain of oligopeptide transport permease C APJL_0028 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0029 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APJL_0031 PF16658 Class II release factor RF3, C-terminal domain APJL_0031 PF03144 Elongation factor Tu domain 2 APJL_0031 PF00009 Elongation factor Tu GTP binding domain APJL_0034 PF01195 Peptidyl-tRNA hydrolase APJL_0035 PF01926 50S ribosome-binding GTPase APJL_0035 PF06071 Protein of unknown function (DUF933) APJL_0038 PF05433 Glycine zipper 2TM domain APJL_0039 PF06185 YecM protein APJL_0040 PF05746 DALR anticodon binding domain APJL_0040 PF03485 Arginyl tRNA synthetase N terminal domain APJL_0040 PF00750 tRNA synthetases class I (R) APJL_0041 PF01018 GTP1/OBG APJL_0041 PF01926 50S ribosome-binding GTPase APJL_0042 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) APJL_0043 PF08032 RNA 2'-O ribose methyltransferase substrate binding APJL_0043 PF00588 SpoU rRNA Methylase family APJL_0044 PF13091 PLD-like domain APJL_0045 PF06827 Zinc finger found in FPG and IleRS APJL_0045 PF08264 Anticodon-binding domain of tRNA APJL_0045 PF00133 tRNA synthetases class I (I, L, M and V) APJL_0046 PF01687 Riboflavin kinase APJL_0046 PF06574 FAD synthetase APJL_0047 PF01467 Cytidylyltransferase-like APJL_0047 PF13521 AAA domain APJL_0048 PF00149 Calcineurin-like phosphoesterase APJL_0049 PF00072 Response regulator receiver domain APJL_0049 PF00486 Transcriptional regulatory protein, C terminal APJL_0052 PF01168 Alanine racemase, N-terminal domain APJL_0054 PF00462 Glutaredoxin APJL_0055 PF03725 3' exoribonuclease family, domain 2 APJL_0055 PF01138 3' exoribonuclease family, domain 1 APJL_0056 PF08340 Domain of unknown function (DUF1732) APJL_0056 PF03755 YicC-like family, N-terminal region APJL_0057 PF01571 Aminomethyltransferase folate-binding domain APJL_0058 PF00037 4Fe-4S binding domain APJL_0059 PF00196 Bacterial regulatory proteins, luxR family APJL_0059 PF00072 Response regulator receiver domain APJL_0060 PF01170 Putative RNA methylase family UPF0020 APJL_0060 PF10672 S-adenosylmethionine-dependent methyltransferase APJL_0060 PF02926 THUMP domain APJL_0061 PF00588 SpoU rRNA Methylase family APJL_0062 PF00923 Transaldolase/Fructose-6-phosphate aldolase APJL_0063 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APJL_0064 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APJL_0065 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0066 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0066 PF12911 N-terminal TM domain of oligopeptide transport permease C APJL_0067 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APJL_0067 PF00005 ABC transporter APJL_0068 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APJL_0068 PF00005 ABC transporter APJL_0069 PF06146 Phosphate-starvation-inducible E APJL_0071 PF01042 Endoribonuclease L-PSP APJL_0072 PF01063 Amino-transferase class IV APJL_0073 PF00462 Glutaredoxin APJL_0074 PF13662 Toprim domain APJL_0074 PF02132 RecR protein APJL_0075 PF02575 YbaB/EbfC DNA-binding family APJL_0076 PF03544 Gram-negative bacterial TonB protein C-terminal APJL_0077 PF02472 Biopolymer transport protein ExbD/TolR APJL_0078 PF01618 MotA/TolQ/ExbB proton channel family APJL_0079 PF00581 Rhodanese-like domain APJL_0081 PF03610 PTS system fructose IIA component APJL_0081 PF05524 PEP-utilising enzyme, N-terminal APJL_0081 PF00391 PEP-utilising enzyme, mobile domain APJL_0081 PF00381 PTS HPr component phosphorylation site APJL_0082 PF02734 DAK2 domain APJL_0083 PF02733 Dak1 domain APJL_0084 PF07992 Pyridine nucleotide-disulphide oxidoreductase APJL_0085 PF02348 Cytidylyltransferase APJL_0086 PF06078 Bacterial protein of unknown function (DUF937) APJL_0087 PF00293 NUDIX domain APJL_0087 PF09297 NADH pyrophosphatase zinc ribbon domain APJL_0088 PF00849 RNA pseudouridylate synthase APJL_0090 PF04186 FxsA cytoplasmic membrane protein APJL_0091 PF00557 Metallopeptidase family M24 APJL_0092 PF01206 Sulfurtransferase TusA APJL_0093 PF06877 Regulator of ribonuclease activity B APJL_0094 PF01926 50S ribosome-binding GTPase APJL_0096 PF02535 ZIP Zinc transporter APJL_0097 PF00920 Dehydratase family APJL_0099 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APJL_0099 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APJL_0099 PF00205 Thiamine pyrophosphate enzyme, central domain APJL_0100 PF02335 Cytochrome c552 APJL_0102 PF13247 4Fe-4S dicluster domain APJL_0103 PF03916 Polysulphide reductase, NrfD APJL_0106 PF00860 Permease family APJL_0107 PF14850 DNA-binding domain of Proline dehydrogenase APJL_0107 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APJL_0107 PF01619 Proline dehydrogenase APJL_0107 PF00171 Aldehyde dehydrogenase family APJL_0108 PF00474 Sodium:solute symporter family APJL_0109 PF01614 Bacterial transcriptional regulator APJL_0109 PF09339 IclR helix-turn-helix domain APJL_0110 PF01812 5-formyltetrahydrofolate cyclo-ligase family APJL_0111 PF05164 Cell division protein ZapA APJL_0112 PF03695 Uncharacterised protein family (UPF0149) APJL_0113 PF01208 Uroporphyrinogen decarboxylase (URO-D) APJL_0114 PF04222 Protein of unknown function (DUF416) APJL_0115 PF00216 Bacterial DNA-binding protein APJL_0116 PF00303 Thymidylate synthase APJL_0118 PF04055 Radical SAM superfamily APJL_0118 PF06968 Biotin and Thiamin Synthesis associated domain APJL_0119 PF00313 'Cold-shock' DNA-binding domain APJL_0120 PF04352 ProQ/FINO family APJL_0121 PF17804 Tail specific protease N-terminal domain APJL_0121 PF03572 Peptidase family S41 APJL_0121 PF11818 C-terminal domain of tail specific protease (DUF3340) APJL_0121 PF00595 PDZ domain APJL_0122 PF03734 L,D-transpeptidase catalytic domain APJL_0123 PF05951 Bacterial protein of unknown function (DUF882) APJL_0124 PF00753 Metallo-beta-lactamase superfamily APJL_0127 PF01230 HIT domain APJL_0128 PF00950 ABC 3 transport family APJL_0129 PF00950 ABC 3 transport family APJL_0130 PF01351 Ribonuclease HII APJL_0131 PF03193 RsgA GTPase APJL_0132 PF03466 LysR substrate binding domain APJL_0132 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_0133 PF13419 Haloacid dehalogenase-like hydrolase APJL_0134 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_0134 PF03466 LysR substrate binding domain APJL_0136 PF00710 Asparaginase, N-terminal APJL_0136 PF17763 Glutaminase/Asparaginase C-terminal domain APJL_0137 PF00117 Glutamine amidotransferase class-I APJL_0137 PF06418 CTP synthase N-terminus APJL_0138 PF10063 Uncharacterized integral membrane protein (DUF2301) APJL_0139 PF00694 Aconitase C-terminal domain APJL_0140 PF00330 Aconitase family (aconitate hydratase) APJL_0141 PF17853 GGDEF-like domain APJL_0141 PF05651 Putative sugar diacid recognition APJL_0141 PF13556 PucR C-terminal helix-turn-helix domain APJL_0142 PF02447 GntP family permease APJL_0143 PF02595 Glycerate kinase family APJL_0144 PF00708 Acylphosphatase APJL_0145 PF11398 Protein of unknown function (DUF2813) APJL_0146 PF03641 Possible lysine decarboxylase APJL_0146 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases APJL_0146 PF11892 Domain of unknown function (DUF3412) APJL_0147 PF01207 Dihydrouridine synthase (Dus) APJL_0149 PF00317 Ribonucleotide reductase, all-alpha domain APJL_0149 PF03477 ATP cone domain APJL_0149 PF02867 Ribonucleotide reductase, barrel domain APJL_0150 PF01521 Iron-sulphur cluster biosynthesis APJL_0150 PF01106 NifU-like domain APJL_0151 PF11973 NQRA C-terminal domain APJL_0151 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) APJL_0152 PF03116 NQR2, RnfD, RnfE family APJL_0153 PF04205 FMN-binding domain APJL_0154 PF02508 Rnf-Nqr subunit, membrane protein APJL_0155 PF02508 Rnf-Nqr subunit, membrane protein APJL_0156 PF00970 Oxidoreductase FAD-binding domain APJL_0156 PF00175 Oxidoreductase NAD-binding domain APJL_0156 PF00111 2Fe-2S iron-sulfur cluster binding domain APJL_0157 PF02424 ApbE family APJL_0158 PF04400 (Na+)-NQR maturation NqrM APJL_0160 PF12832 MFS_1 like family APJL_0161 PF14748 Pyrroline-5-carboxylate reductase dimerisation APJL_0161 PF03807 NADP oxidoreductase coenzyme F420-dependent APJL_0162 PF04381 Putative exonuclease, RdgC APJL_0163 PF13419 Haloacid dehalogenase-like hydrolase APJL_0166 PF02508 Rnf-Nqr subunit, membrane protein APJL_0167 PF04060 Putative Fe-S cluster APJL_0168 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APJL_0168 PF12838 4Fe-4S dicluster domain APJL_0168 PF13375 RnfC Barrel sandwich hybrid domain APJL_0169 PF03458 UPF0126 domain APJL_0170 PF03116 NQR2, RnfD, RnfE family APJL_0171 PF04205 FMN-binding domain APJL_0172 PF02508 Rnf-Nqr subunit, membrane protein APJL_0173 PF03279 Bacterial lipid A biosynthesis acyltransferase APJL_0176 PF01258 Prokaryotic dksA/traR C4-type zinc finger APJL_0177 PF12626 Polymerase A arginine-rich C-terminus APJL_0177 PF01743 Poly A polymerase head domain APJL_0177 PF12627 Probable RNA and SrmB- binding site of polymerase A APJL_0178 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APJL_0180 PF11739 Dicarboxylate transport APJL_0182 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APJL_0183 PF00929 Exonuclease APJL_0185 PF02153 Prephenate dehydrogenase APJL_0185 PF01817 Chorismate mutase type II APJL_0186 PF00793 DAHP synthetase I family APJL_0187 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APJL_0188 PF02887 Pyruvate kinase, alpha/beta domain APJL_0188 PF00224 Pyruvate kinase, barrel domain APJL_0189 PF00300 Histidine phosphatase superfamily (branch 1) APJL_0190 PF01207 Dihydrouridine synthase (Dus) APJL_0191 PF02954 Bacterial regulatory protein, Fis family APJL_0192 PF00209 Sodium:neurotransmitter symporter family APJL_0193 PF02086 D12 class N6 adenine-specific DNA methyltransferase APJL_0194 PF01761 3-dehydroquinate synthase APJL_0195 PF01202 Shikimate kinase APJL_0196 PF00912 Transglycosylase APJL_0196 PF17092 Penicillin-binding protein OB-like domain APJL_0196 PF00905 Penicillin binding protein transpeptidase domain APJL_0197 PF11104 Type IV pilus assembly protein PilM; APJL_0201 PF03958 Bacterial type II/III secretion system short domain APJL_0201 PF00263 Bacterial type II and III secretion system protein APJL_0202 PF01029 NusB family APJL_0203 PF02769 AIR synthase related protein, C-terminal domain APJL_0203 PF00586 AIR synthase related protein, N-terminal domain APJL_0204 PF04608 Phosphatidylglycerophosphatase A APJL_0205 PF01810 LysE type translocator APJL_0206 PF00588 SpoU rRNA Methylase family APJL_0206 PF08032 RNA 2'-O ribose methyltransferase substrate binding APJL_0207 PF00459 Inositol monophosphatase family APJL_0208 PF02780 Transketolase, C-terminal domain APJL_0208 PF02779 Transketolase, pyrimidine binding domain APJL_0208 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APJL_0209 PF13333 Integrase core domain APJL_0209 PF00665 Integrase core domain APJL_0212 PF00464 Serine hydroxymethyltransferase APJL_0213 PF01513 ATP-NAD kinase APJL_0214 PF18019 HD domain APJL_0215 PF01867 CRISPR associated protein Cas1 APJL_0217 PF09615 CRISPR-associated protein (Cas_Csy3) APJL_0218 PF09614 CRISPR-associated protein (Cas_Csy2) APJL_0220 PF02824 TGS domain APJL_0220 PF03129 Anticodon binding domain APJL_0220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APJL_0220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APJL_0221 PF03783 Curli production assembly/transport component CsgG APJL_0223 PF05643 Putative bacterial lipoprotein (DUF799) APJL_0224 PF05198 Translation initiation factor IF-3, N-terminal domain APJL_0224 PF00707 Translation initiation factor IF-3, C-terminal domain APJL_0225 PF01632 Ribosomal protein L35 APJL_0226 PF00453 Ribosomal protein L20 APJL_0230 PF13333 Integrase core domain APJL_0230 PF13276 HTH-like domain APJL_0230 PF00665 Integrase core domain APJL_0231 PF13333 Integrase core domain APJL_0231 PF00665 Integrase core domain APJL_0232 PF00665 Integrase core domain APJL_0232 PF13333 Integrase core domain APJL_0233 PF03471 Transporter associated domain APJL_0233 PF01595 Cyclin M transmembrane N-terminal domain APJL_0233 PF00571 CBS domain APJL_0234 PF00849 RNA pseudouridylate synthase APJL_0235 PF00300 Histidine phosphatase superfamily (branch 1) APJL_0236 PF03652 Holliday junction resolvase APJL_0237 PF02622 Uncharacterized ACR, COG1678 APJL_0238 PF04452 RNA methyltransferase APJL_0240 PF01722 BolA-like protein APJL_0244 PF07516 SecA Wing and Scaffold domain APJL_0244 PF01043 SecA preprotein cross-linking domain APJL_0244 PF07517 SecA DEAD-like domain APJL_0244 PF02810 SEC-C motif APJL_0246 PF00293 NUDIX domain APJL_0247 PF01118 Semialdehyde dehydrogenase, NAD binding domain APJL_0248 PF00696 Amino acid kinase family APJL_0249 PF00202 Aminotransferase class-III APJL_0253 PF07497 Rho termination factor, RNA-binding domain APJL_0253 PF07498 Rho termination factor, N-terminal domain APJL_0253 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APJL_0254 PF00291 Pyridoxal-phosphate dependent enzyme APJL_0255 PF00288 GHMP kinases N terminal domain APJL_0255 PF08544 GHMP kinases C terminal APJL_0259 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APJL_0259 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APJL_0260 PF01168 Alanine racemase, N-terminal domain APJL_0260 PF00842 Alanine racemase, C-terminal domain APJL_0261 PF13538 UvrD-like helicase C-terminal domain APJL_0262 PF01546 Peptidase family M20/M25/M40 APJL_0262 PF07687 Peptidase dimerisation domain APJL_0263 PF00156 Phosphoribosyl transferase domain APJL_0264 PF00625 Guanylate kinase APJL_0265 PF02321 Outer membrane efflux protein APJL_0266 PF03658 RnfH family Ubiquitin APJL_0267 PF03364 Polyketide cyclase / dehydrase and lipid transport APJL_0268 PF03459 TOBE domain APJL_0268 PF00005 ABC transporter APJL_0269 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0271 PF01061 ABC-2 type transporter APJL_0272 PF00005 ABC transporter APJL_0273 PF12169 DNA polymerase III subunits gamma and tau domain III APJL_0273 PF12170 DNA polymerase III tau subunit V interacting with alpha APJL_0274 PF00156 Phosphoribosyl transferase domain APJL_0278 PF00291 Pyridoxal-phosphate dependent enzyme APJL_0279 PF04073 Aminoacyl-tRNA editing domain APJL_0280 PF00005 ABC transporter APJL_0283 PF04358 DsrC like protein APJL_0284 PF01027 Inhibitor of apoptosis-promoting Bax1 APJL_0285 PF01066 CDP-alcohol phosphatidyltransferase APJL_0287 PF02151 UvrB/uvrC motif APJL_0287 PF08459 UvrC Helix-hairpin-helix N-terminal APJL_0287 PF01541 GIY-YIG catalytic domain APJL_0288 PF01026 TatD related DNase APJL_0289 PF13361 UvrD-like helicase C-terminal domain APJL_0289 PF00580 UvrD/REP helicase N-terminal domain APJL_0290 PF08402 TOBE domain APJL_0290 PF00005 ABC transporter APJL_0291 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0292 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0295 PF05491 RuvB C-terminal winged helix domain APJL_0295 PF17864 RuvB AAA lid domain APJL_0295 PF05496 Holliday junction DNA helicase RuvB P-loop domain APJL_0297 PF03989 DNA gyrase C-terminal domain, beta-propeller APJL_0297 PF00521 DNA gyrase/topoisomerase IV, subunit A APJL_0298 PF12161 HsdM N-terminal domain APJL_0298 PF02384 N-6 DNA Methylase APJL_0302 PF01420 Type I restriction modification DNA specificity domain APJL_0304 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APJL_0304 PF12008 Type I restriction and modification enzyme - subunit R C terminal APJL_0304 PF18766 SWI2/SNF2 ATPase APJL_0306 PF00899 ThiF family APJL_0307 PF17274 Family of unknown function (DUF5339) APJL_0308 PF01654 Cytochrome bd terminal oxidase subunit I APJL_0309 PF02322 Cytochrome bd terminal oxidase subunit II APJL_0312 PF03061 Thioesterase superfamily APJL_0313 PF01618 MotA/TolQ/ExbB proton channel family APJL_0314 PF02472 Biopolymer transport protein ExbD/TolR APJL_0315 PF06519 TolA C-terminal APJL_0315 PF06519 TolA C-terminal APJL_0316 PF04052 TolB amino-terminal domain APJL_0316 PF07676 WD40-like Beta Propeller Repeat APJL_0317 PF00691 OmpA family APJL_0319 PF05099 Tellurite resistance protein TerB APJL_0319 PF00226 DnaJ domain APJL_0320 PF01207 Dihydrouridine synthase (Dus) APJL_0321 PF05128 Domain of unknown function (DUF697) APJL_0326 PF00899 ThiF family APJL_0327 PF01938 TRAM domain APJL_0327 PF05958 tRNA (Uracil-5-)-methyltransferase APJL_0328 PF13286 Phosphohydrolase-associated domain APJL_0328 PF01966 HD domain APJL_0329 PF18337 RapA N-terminal Tudor like domain APJL_0329 PF00176 SNF2 family N-terminal domain APJL_0329 PF00271 Helicase conserved C-terminal domain APJL_0329 PF12137 RNA polymerase recycling family C-terminal APJL_0329 PF18339 RapA N-terminal Tudor like domain 1 APJL_0330 PF00849 RNA pseudouridylate synthase APJL_0331 PF01510 N-acetylmuramoyl-L-alanine amidase APJL_0332 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APJL_0333 PF00156 Phosphoribosyl transferase domain APJL_0334 PF01717 Cobalamin-independent synthase, Catalytic domain APJL_0335 PF01053 Cys/Met metabolism PLP-dependent enzyme APJL_0336 PF02600 Disulfide bond formation protein DsbB APJL_0337 PF06450 Bacterial Na+/H+ antiporter B (NhaB) APJL_0338 PF00392 Bacterial regulatory proteins, gntR family APJL_0338 PF07840 FadR C-terminal domain APJL_0339 PF02562 PhoH-like protein APJL_0341 PF03462 PCRF domain APJL_0341 PF00472 RF-1 domain APJL_0342 PF00472 RF-1 domain APJL_0342 PF03462 PCRF domain APJL_0343 PF00586 AIR synthase related protein, N-terminal domain APJL_0343 PF02769 AIR synthase related protein, C-terminal domain APJL_0344 PF00293 NUDIX domain APJL_0345 PF01494 FAD binding domain APJL_0349 PF01494 FAD binding domain APJL_0350 PF03668 P-loop ATPase protein family APJL_0351 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APJL_0352 PF00005 ABC transporter APJL_0352 PF12399 Branched-chain amino acid ATP-binding cassette transporter APJL_0353 PF03968 OstA-like protein APJL_0355 PF00311 Phosphoenolpyruvate carboxylase APJL_0356 PF04536 TPM domain APJL_0358 PF04011 LemA family APJL_0359 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APJL_0360 PF00294 pfkB family carbohydrate kinase APJL_0361 PF00381 PTS HPr component phosphorylation site APJL_0361 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APJL_0362 PF02806 Alpha amylase, C-terminal all-beta domain APJL_0362 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APJL_0362 PF00128 Alpha amylase, catalytic domain APJL_0363 PF18390 Glycogen debranching enzyme C-terminal domain APJL_0363 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APJL_0363 PF00128 Alpha amylase, catalytic domain APJL_0364 PF00483 Nucleotidyl transferase APJL_0365 PF08323 Starch synthase catalytic domain APJL_0365 PF00534 Glycosyl transferases group 1 APJL_0366 PF00343 Carbohydrate phosphorylase APJL_0367 PF00334 Nucleoside diphosphate kinase APJL_0368 PF08264 Anticodon-binding domain of tRNA APJL_0368 PF09334 tRNA synthetases class I (M) APJL_0368 PF01588 Putative tRNA binding domain APJL_0369 PF13378 Enolase C-terminal domain-like APJL_0371 PF00849 RNA pseudouridylate synthase APJL_0371 PF01479 S4 domain APJL_0372 PF07690 Major Facilitator Superfamily APJL_0375 PF01261 Xylose isomerase-like TIM barrel APJL_0376 PF00877 NlpC/P60 family APJL_0377 PF00717 Peptidase S24-like APJL_0379 PF01228 Glycine radical APJL_0380 PF03167 Uracil DNA glycosylase superfamily APJL_0381 PF04393 Protein of unknown function (DUF535) APJL_0382 PF00082 Subtilase family APJL_0382 PF03797 Autotransporter beta-domain APJL_0383 PF00271 Helicase conserved C-terminal domain APJL_0383 PF00270 DEAD/DEAH box helicase APJL_0383 PF04408 Helicase associated domain (HA2) APJL_0383 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APJL_0383 PF11898 Domain of unknown function (DUF3418) APJL_0384 PF04284 Protein of unknown function (DUF441) APJL_0385 PF01025 GrpE APJL_0386 PF13416 Bacterial extracellular solute-binding protein APJL_0387 PF01554 MatE APJL_0388 PF12705 PD-(D/E)XK nuclease superfamily APJL_0388 PF00580 UvrD/REP helicase N-terminal domain APJL_0388 PF13361 UvrD-like helicase C-terminal domain APJL_0389 PF00795 Carbon-nitrogen hydrolase APJL_0390 PF00571 CBS domain APJL_0390 PF03471 Transporter associated domain APJL_0391 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) APJL_0392 PF00230 Major intrinsic protein APJL_0393 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APJL_0393 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APJL_0394 PF00004 ATPase family associated with various cellular activities (AAA) APJL_0394 PF02190 ATP-dependent protease La (LON) substrate-binding domain APJL_0394 PF05362 Lon protease (S16) C-terminal proteolytic domain APJL_0395 PF07690 Major Facilitator Superfamily APJL_0398 PF01266 FAD dependent oxidoreductase APJL_0398 PF04324 BFD-like [2Fe-2S] binding domain APJL_0399 PF00890 FAD binding domain APJL_0400 PF02754 Cysteine-rich domain APJL_0400 PF13183 4Fe-4S dicluster domain APJL_0402 PF01872 RibD C-terminal domain APJL_0402 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APJL_0403 PF00677 Lumazine binding domain APJL_0404 PF00925 GTP cyclohydrolase II APJL_0404 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APJL_0405 PF00885 6,7-dimethyl-8-ribityllumazine synthase APJL_0407 PF03449 Transcription elongation factor, N-terminal APJL_0407 PF01272 Transcription elongation factor, GreA/GreB, C-term APJL_0408 PF00571 CBS domain APJL_0408 PF01380 SIS domain APJL_0409 PF00883 Cytosol aminopeptidase family, catalytic domain APJL_0409 PF12404 Peptidase APJL_0410 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) APJL_0411 PF01758 Sodium Bile acid symporter family APJL_0412 PF13533 Biotin-lipoyl like APJL_0414 PF00682 HMGL-like APJL_0414 PF08502 LeuA allosteric (dimerisation) domain APJL_0415 PF04542 Sigma-70 region 2 APJL_0415 PF08281 Sigma-70, region 4 APJL_0416 PF03873 Anti sigma-E protein RseA, C-terminal domain APJL_0416 PF03872 Anti sigma-E protein RseA, N-terminal domain APJL_0418 PF13193 AMP-binding enzyme C-terminal domain APJL_0418 PF00501 AMP-binding enzyme APJL_0420 PF00398 Ribosomal RNA adenine dimethylase APJL_0421 PF00639 PPIC-type PPIASE domain APJL_0421 PF09312 SurA N-terminal domain APJL_0422 PF00156 Phosphoribosyl transferase domain APJL_0423 PF00294 pfkB family carbohydrate kinase APJL_0423 PF01467 Cytidylyltransferase-like APJL_0424 PF01926 50S ribosome-binding GTPase APJL_0424 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APJL_0425 PF01488 Shikimate / quinate 5-dehydrogenase APJL_0425 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APJL_0425 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APJL_0428 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APJL_0428 PF13288 DXP reductoisomerase C-terminal domain APJL_0428 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APJL_0432 PF07977 FabA-like domain APJL_0433 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APJL_0433 PF00132 Bacterial transferase hexapeptide (six repeats) APJL_0435 PF07244 Surface antigen variable number repeat APJL_0435 PF01103 Surface antigen APJL_0436 PF02163 Peptidase family M50 APJL_0438 PF01255 Putative undecaprenyl diphosphate synthase APJL_0439 PF00753 Metallo-beta-lactamase superfamily APJL_0439 PF16123 Hydroxyacylglutathione hydrolase C-terminus APJL_0440 PF00480 ROK family APJL_0441 PF01569 PAP2 superfamily APJL_0442 PF01985 CRS1 / YhbY (CRM) domain APJL_0443 PF00535 Glycosyl transferase family 2 APJL_0446 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APJL_0447 PF00764 Arginosuccinate synthase APJL_0448 PF00075 RNase H APJL_0449 PF02674 Colicin V production protein APJL_0450 PF00156 Phosphoribosyl transferase domain APJL_0452 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APJL_0452 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APJL_0453 PF04355 SmpA / OmlA family APJL_0454 PF04245 37-kD nucleoid-associated bacterial protein APJL_0455 PF01042 Endoribonuclease L-PSP APJL_0457 PF07119 Protein of unknown function (DUF1375) APJL_0458 PF00180 Isocitrate/isopropylmalate dehydrogenase APJL_0459 PF01641 SelR domain APJL_0460 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APJL_0460 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APJL_0462 PF04085 rod shape-determining protein MreC APJL_0463 PF04093 rod shape-determining protein MreD APJL_0464 PF12002 MgsA AAA+ ATPase C terminal APJL_0464 PF16193 AAA C-terminal domain APJL_0464 PF00004 ATPase family associated with various cellular activities (AAA) APJL_0465 PF00950 ABC 3 transport family APJL_0466 PF13230 Glutamine amidotransferases class-II APJL_0467 PF00561 alpha/beta hydrolase fold APJL_0468 PF02698 DUF218 domain APJL_0471 PF02589 LUD domain APJL_0472 PF13183 4Fe-4S dicluster domain APJL_0472 PF02589 LUD domain APJL_0472 PF11870 Domain of unknown function (DUF3390) APJL_0473 PF02754 Cysteine-rich domain APJL_0474 PF02652 L-lactate permease APJL_0475 PF00816 H-NS histone family APJL_0476 PF03553 Na+/H+ antiporter family APJL_0477 PF13407 Periplasmic binding protein domain APJL_0478 PF02629 CoA binding domain APJL_0478 PF00549 CoA-ligase APJL_0479 PF08442 ATP-grasp domain APJL_0479 PF00549 CoA-ligase APJL_0480 PF04393 Protein of unknown function (DUF535) APJL_0481 PF02817 e3 binding domain APJL_0481 PF00364 Biotin-requiring enzyme APJL_0481 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APJL_0482 PF16870 2-oxoglutarate dehydrogenase C-terminal APJL_0482 PF00676 Dehydrogenase E1 component APJL_0482 PF16078 2-oxoglutarate dehydrogenase N-terminus APJL_0482 PF02779 Transketolase, pyrimidine binding domain APJL_0483 PF00005 ABC transporter APJL_0484 PF04225 Opacity-associated protein A LysM-like domain APJL_0484 PF01551 Peptidase family M23 APJL_0485 PF10411 Disulfide bond isomerase protein N-terminus APJL_0485 PF13098 Thioredoxin-like domain APJL_0486 PF01368 DHH family APJL_0486 PF02272 DHHA1 domain APJL_0486 PF17768 RecJ OB domain APJL_0487 PF00691 OmpA family APJL_0487 PF01389 OmpA-like transmembrane domain APJL_0489 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APJL_0489 PF00672 HAMP domain APJL_0489 PF07730 Histidine kinase APJL_0489 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APJL_0491 PF01725 Ham1 family APJL_0492 PF01906 Putative heavy-metal-binding APJL_0493 PF01268 Formate--tetrahydrofolate ligase APJL_0494 PF03692 Putative zinc- or iron-chelating domain APJL_0495 PF00106 short chain dehydrogenase APJL_0496 PF00291 Pyridoxal-phosphate dependent enzyme APJL_0497 PF00290 Tryptophan synthase alpha chain APJL_0498 PF12441 CopG antitoxin of type II toxin-antitoxin system APJL_0500 PF01612 3'-5' exonuclease APJL_0500 PF00476 DNA polymerase family A APJL_0500 PF01367 5'-3' exonuclease, C-terminal SAM fold APJL_0500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APJL_0503 PF03548 Outer membrane lipoprotein carrier protein LolA APJL_0504 PF01371 Trp repressor protein APJL_0505 PF00912 Transglycosylase APJL_0506 PF02627 Carboxymuconolactone decarboxylase family APJL_0512 PF00881 Nitroreductase family APJL_0513 PF08443 RimK-like ATP-grasp domain APJL_0513 PF18030 RimK PreATP-grasp domain APJL_0514 PF02698 DUF218 domain APJL_0517 PF01386 Ribosomal L25p family APJL_0518 PF06226 Protein of unknown function (DUF1007) APJL_0519 PF03824 High-affinity nickel-transport protein APJL_0520 PF01235 Sodium:alanine symporter family APJL_0522 PF00005 ABC transporter APJL_0523 PF00899 ThiF family APJL_0524 PF02597 ThiS family APJL_0525 PF05690 Thiazole biosynthesis protein ThiG APJL_0526 PF05690 Thiazole biosynthesis protein ThiG APJL_0527 PF04055 Radical SAM superfamily APJL_0527 PF06968 Biotin and Thiamin Synthesis associated domain APJL_0528 PF03070 TENA/THI-4/PQQC family APJL_0529 PF09084 NMT1/THI5 like APJL_0534 PF06421 GTP-binding protein LepA C-terminus APJL_0534 PF03144 Elongation factor Tu domain 2 APJL_0534 PF00679 Elongation factor G C-terminus APJL_0534 PF00009 Elongation factor Tu GTP binding domain APJL_0535 PF10502 Signal peptidase, peptidase S26 APJL_0536 PF00035 Double-stranded RNA binding motif APJL_0536 PF14622 Ribonuclease-III-like APJL_0537 PF01926 50S ribosome-binding GTPase APJL_0537 PF07650 KH domain APJL_0538 PF11967 Recombination protein O N terminal APJL_0538 PF02565 Recombination protein O C terminal APJL_0545 PF00437 Type II/IV secretion system protein APJL_0548 PF00263 Bacterial type II and III secretion system protein APJL_0548 PF03958 Bacterial type II/III secretion system short domain APJL_0551 PF05872 Bacterial protein of unknown function (DUF853) APJL_0553 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0559 PF00318 Ribosomal protein S2 APJL_0560 PF00889 Elongation factor TS APJL_0561 PF00884 Sulfatase APJL_0562 PF00696 Amino acid kinase family APJL_0563 PF01765 Ribosome recycling factor APJL_0564 PF00392 Bacterial regulatory proteins, gntR family APJL_0564 PF00155 Aminotransferase class I and II APJL_0565 PF01680 SOR/SNZ family APJL_0566 PF01174 SNO glutamine amidotransferase family APJL_0567 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APJL_0568 PF03880 DbpA RNA binding domain APJL_0568 PF00270 DEAD/DEAH box helicase APJL_0568 PF00271 Helicase conserved C-terminal domain APJL_0570 PF00013 KH domain APJL_0570 PF00575 S1 RNA binding domain APJL_0570 PF01138 3' exoribonuclease family, domain 1 APJL_0570 PF03725 3' exoribonuclease family, domain 2 APJL_0570 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APJL_0571 PF00521 DNA gyrase/topoisomerase IV, subunit A APJL_0571 PF03989 DNA gyrase C-terminal domain, beta-propeller APJL_0572 PF03882 MukF winged-helix domain APJL_0572 PF17193 MukF C-terminal domain APJL_0572 PF17192 MukF middle domain APJL_0573 PF04288 MukE-like family APJL_0574 PF04310 MukB N-terminal APJL_0574 PF16330 MukB hinge domain APJL_0575 PF07690 Major Facilitator Superfamily APJL_0576 PF00884 Sulfatase APJL_0576 PF11893 Domain of unknown function (DUF3413) APJL_0577 PF07208 Protein of unknown function (DUF1414) APJL_0578 PF00440 Bacterial regulatory proteins, tetR family APJL_0579 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APJL_0580 PF00873 AcrB/AcrD/AcrF family APJL_0581 PF12804 MobA-like NTP transferase domain APJL_0581 PF00132 Bacterial transferase hexapeptide (six repeats) APJL_0583 PF08942 Domain of unknown function (DUF1919) APJL_0584 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APJL_0584 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APJL_0584 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APJL_0584 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APJL_0585 PF00958 GMP synthase C terminal domain APJL_0585 PF02540 NAD synthase APJL_0585 PF00117 Glutamine amidotransferase class-I APJL_0587 PF00571 CBS domain APJL_0587 PF00478 IMP dehydrogenase / GMP reductase domain APJL_0588 PF01728 FtsJ-like methyltransferase APJL_0589 PF17862 AAA+ lid domain APJL_0589 PF01434 Peptidase family M41 APJL_0589 PF00004 ATPase family associated with various cellular activities (AAA) APJL_0589 PF06480 FtsH Extracellular APJL_0590 PF03222 Tryptophan/tyrosine permease family APJL_0591 PF03222 Tryptophan/tyrosine permease family APJL_0592 PF01966 HD domain APJL_0592 PF08335 GlnD PII-uridylyltransferase APJL_0593 PF06295 Protein of unknown function (DUF1043) APJL_0594 PF00572 Ribosomal protein L13 APJL_0595 PF00380 Ribosomal protein S9/S16 APJL_0596 PF03883 Peroxide stress protein YaaA APJL_0598 PF01545 Cation efflux family APJL_0598 PF16916 Dimerisation domain of Zinc Transporter APJL_0599 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) APJL_0600 PF00375 Sodium:dicarboxylate symporter family APJL_0601 PF00881 Nitroreductase family APJL_0602 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APJL_0602 PF01409 tRNA synthetases class II core domain (F) APJL_0603 PF03483 B3/4 domain APJL_0603 PF01588 Putative tRNA binding domain APJL_0603 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APJL_0603 PF03484 tRNA synthetase B5 domain APJL_0603 PF03147 Ferredoxin-fold anticodon binding domain APJL_0604 PF00216 Bacterial DNA-binding protein APJL_0605 PF00877 NlpC/P60 family APJL_0606 PF00665 Integrase core domain APJL_0606 PF13333 Integrase core domain APJL_0607 PF13333 Integrase core domain APJL_0607 PF00665 Integrase core domain APJL_0607 PF13276 HTH-like domain APJL_0610 PF00480 ROK family APJL_0610 PF01047 MarR family APJL_0611 PF01612 3'-5' exonuclease APJL_0611 PF00570 HRDC domain APJL_0612 PF01037 Lrp/AsnC ligand binding domain APJL_0613 PF17854 FtsK alpha domain APJL_0613 PF01580 FtsK/SpoIIIE family APJL_0613 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APJL_0613 PF09397 Ftsk gamma domain APJL_0614 PF04228 Putative neutral zinc metallopeptidase APJL_0615 PF00793 DAHP synthetase I family APJL_0616 PF00814 Glycoprotease family APJL_0617 PF00265 Thymidine kinase APJL_0618 PF06005 Cell division protein ZapB APJL_0619 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APJL_0620 PF01784 NIF3 (NGG1p interacting factor 3) APJL_0621 PF00005 ABC transporter APJL_0621 PF02687 FtsX-like permease family APJL_0621 PF12704 MacB-like periplasmic core domain APJL_0622 PF00672 HAMP domain APJL_0622 PF00512 His Kinase A (phospho-acceptor) domain APJL_0622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APJL_0622 PF16527 Two-component sensor protein CpxA, periplasmic domain APJL_0623 PF00486 Transcriptional regulatory protein, C terminal APJL_0623 PF00072 Response regulator receiver domain APJL_0624 PF03819 MazG nucleotide pyrophosphohydrolase domain APJL_0626 PF01039 Carboxyl transferase domain APJL_0626 PF17848 Acetyl-coA carboxylase zinc finger domain APJL_0627 PF08245 Mur ligase middle domain APJL_0628 PF17384 RimP C-terminal SH3 domain APJL_0628 PF02576 RimP N-terminal domain APJL_0629 PF00575 S1 RNA binding domain APJL_0629 PF08529 NusA N-terminal domain APJL_0629 PF13184 NusA-like KH domain APJL_0630 PF04760 Translation initiation factor IF-2, N-terminal region APJL_0630 PF00009 Elongation factor Tu GTP binding domain APJL_0630 PF11987 Translation-initiation factor 2 APJL_0631 PF02033 Ribosome-binding factor A APJL_0632 PF01509 TruB family pseudouridylate synthase (N terminal domain) APJL_0632 PF16198 tRNA pseudouridylate synthase B C-terminal domain APJL_0632 PF09157 Pseudouridine synthase II TruB, C-terminal APJL_0633 PF13406 Transglycosylase SLT domain APJL_0634 PF07411 Domain of unknown function (DUF1508) APJL_0635 PF01515 Phosphate acetyl/butaryl transferase APJL_0635 PF07085 DRTGG domain APJL_0636 PF00871 Acetokinase family APJL_0637 PF02872 5'-nucleotidase, C-terminal domain APJL_0637 PF00149 Calcineurin-like phosphoesterase APJL_0639 PF13609 Gram-negative porin APJL_0641 PF00483 Nucleotidyl transferase APJL_0642 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APJL_0642 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APJL_0642 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APJL_0642 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APJL_0643 PF02599 Global regulator protein family APJL_0644 PF01411 tRNA synthetases class II (A) APJL_0644 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APJL_0644 PF02272 DHHA1 domain APJL_0645 PF00582 Universal stress protein family APJL_0646 PF00325 Bacterial regulatory proteins, crp family APJL_0646 PF00027 Cyclic nucleotide-binding domain APJL_0647 PF04386 Stringent starvation protein B APJL_0648 PF00043 Glutathione S-transferase, C-terminal domain APJL_0648 PF02798 Glutathione S-transferase, N-terminal domain APJL_0649 PF00731 AIR carboxylase APJL_0650 PF17763 Glutaminase/Asparaginase C-terminal domain APJL_0650 PF00710 Asparaginase, N-terminal APJL_0651 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APJL_0651 PF02222 ATP-grasp domain APJL_0652 PF00155 Aminotransferase class I and II APJL_0653 PF05195 Aminopeptidase P, N-terminal domain APJL_0653 PF00557 Metallopeptidase family M24 APJL_0654 PF08774 VRR-NUC domain APJL_0654 PF04851 Type III restriction enzyme, res subunit APJL_0655 PF01555 DNA methylase APJL_0655 PF18273 Type III R-M EcoP15I C-terminal domain APJL_0658 PF13173 AAA domain APJL_0658 PF13635 Domain of unknown function (DUF4143) APJL_0659 PF01850 PIN domain APJL_0662 PF04851 Type III restriction enzyme, res subunit APJL_0662 PF02151 UvrB/uvrC motif APJL_0662 PF17757 UvrB interaction domain APJL_0662 PF12344 Ultra-violet resistance protein B APJL_0662 PF00271 Helicase conserved C-terminal domain APJL_0663 PF09375 Imelysin APJL_0664 PF04261 Dyp-type peroxidase family APJL_0664 PF10518 TAT (twin-arginine translocation) pathway signal sequence APJL_0666 PF02811 PHP domain APJL_0668 PF00929 Exonuclease APJL_0668 PF08411 Exonuclease C-terminal APJL_0669 PF00654 Voltage gated chloride channel APJL_0670 PF01336 OB-fold nucleic acid binding domain APJL_0670 PF00152 tRNA synthetases class II (D, K and N) APJL_0671 PF04055 Radical SAM superfamily APJL_0673 PF09285 Elongation factor P, C-terminal APJL_0673 PF01132 Elongation factor P (EF-P) OB domain APJL_0673 PF08207 Elongation factor P (EF-P) KOW-like domain APJL_0674 PF00749 tRNA synthetases class I (E and Q), catalytic domain APJL_0674 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APJL_0676 PF07690 Major Facilitator Superfamily APJL_0677 PF14718 Soluble lytic murein transglycosylase L domain APJL_0677 PF01464 Transglycosylase SLT domain APJL_0678 PF00156 Phosphoribosyl transferase domain APJL_0679 PF01053 Cys/Met metabolism PLP-dependent enzyme APJL_0680 PF05173 Dihydrodipicolinate reductase, C-terminus APJL_0680 PF01113 Dihydrodipicolinate reductase, N-terminus APJL_0683 PF18125 RlmM ferredoxin-like domain APJL_0683 PF01728 FtsJ-like methyltransferase APJL_0684 PF04241 Protein of unknown function (DUF423) APJL_0685 PF09330 D-lactate dehydrogenase, membrane binding APJL_0685 PF01565 FAD binding domain APJL_0686 PF00384 Molybdopterin oxidoreductase APJL_0686 PF01568 Molydopterin dinucleotide binding domain APJL_0686 PF18364 Molybdopterin oxidoreductase N-terminal domain APJL_0687 PF03264 NapC/NirT cytochrome c family, N-terminal region APJL_0688 PF04055 Radical SAM superfamily APJL_0688 PF06463 Molybdenum Cofactor Synthesis C APJL_0689 PF01967 MoaC family APJL_0690 PF02597 ThiS family APJL_0691 PF02391 MoaE protein APJL_0692 PF02130 Uncharacterized protein family UPF0054 APJL_0693 PF17176 tRNA-binding domain APJL_0693 PF05127 Helicase APJL_0693 PF13718 GNAT acetyltransferase 2 APJL_0694 PF08272 Topoisomerase I zinc-ribbon-like APJL_0694 PF01396 Topoisomerase DNA binding C4 zinc finger APJL_0694 PF01131 DNA topoisomerase APJL_0694 PF01751 Toprim domain APJL_0695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_0695 PF03466 LysR substrate binding domain APJL_0696 PF00583 Acetyltransferase (GNAT) family APJL_0696 PF00696 Amino acid kinase family APJL_0697 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APJL_0698 PF00155 Aminotransferase class I and II APJL_0699 PF01053 Cys/Met metabolism PLP-dependent enzyme APJL_0700 PF00266 Aminotransferase class-V APJL_0704 PF01555 DNA methylase APJL_0705 PF01380 SIS domain APJL_0705 PF01418 Helix-turn-helix domain, rpiR family APJL_0706 PF04074 YhcH/YjgK/YiaL APJL_0707 PF02541 Ppx/GppA phosphatase family APJL_0708 PF04363 Protein of unknown function (DUF496) APJL_0711 PF03477 ATP cone domain APJL_0712 PF05166 YcgL domain APJL_0713 PF00772 DnaB-like helicase N terminal domain APJL_0713 PF03796 DnaB-like helicase C terminal domain APJL_0714 PF01497 Periplasmic binding protein APJL_0715 PF01032 FecCD transport family APJL_0716 PF01032 FecCD transport family APJL_0717 PF00005 ABC transporter APJL_0718 PF01865 Protein of unknown function DUF47 APJL_0719 PF01384 Phosphate transporter family APJL_0720 PF08239 Bacterial SH3 domain APJL_0722 PF01814 Hemerythrin HHE cation binding domain APJL_0723 PF01702 Queuine tRNA-ribosyltransferase APJL_0726 PF00313 'Cold-shock' DNA-binding domain APJL_0729 PF00205 Thiamine pyrophosphate enzyme, central domain APJL_0729 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APJL_0729 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APJL_0730 PF10369 Small subunit of acetolactate synthase APJL_0731 PF01523 Putative modulator of DNA gyrase APJL_0732 PF04751 Protein of unknown function (DUF615) APJL_0733 PF04247 Invasion gene expression up-regulator, SirB APJL_0734 PF02441 Flavoprotein APJL_0735 PF04474 Protein of unknown function (DUF554) APJL_0737 PF01253 Translation initiation factor SUI1 APJL_0738 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APJL_0739 PF18073 Rubredoxin metal binding domain APJL_0740 PF06305 Lipopolysaccharide assembly protein A domain APJL_0741 PF00216 Bacterial DNA-binding protein APJL_0742 PF00575 S1 RNA binding domain APJL_0743 PF02224 Cytidylate kinase APJL_0744 PF13180 PDZ domain APJL_0745 PF03840 Preprotein translocase SecG subunit APJL_0746 PF01131 DNA topoisomerase APJL_0746 PF01751 Toprim domain APJL_0747 PF00245 Alkaline phosphatase APJL_0748 PF03411 Penicillin-insensitive murein endopeptidase APJL_0749 PF01264 Chorismate synthase APJL_0750 PF00924 Mechanosensitive ion channel APJL_0750 PF12794 Mechanosensitive ion channel inner membrane domain 1 APJL_0750 PF12795 Mechanosensitive ion channel porin domain APJL_0751 PF00924 Mechanosensitive ion channel APJL_0751 PF12795 Mechanosensitive ion channel porin domain APJL_0751 PF12794 Mechanosensitive ion channel inner membrane domain 1 APJL_0752 PF00501 AMP-binding enzyme APJL_0753 PF03925 SeqA protein C-terminal domain APJL_0753 PF17206 SeqA protein N-terminal domain APJL_0754 PF00561 alpha/beta hydrolase fold APJL_0755 PF13649 Methyltransferase domain APJL_0759 PF00575 S1 RNA binding domain APJL_0759 PF08206 Ribonuclease B OB domain APJL_0759 PF00773 RNB domain APJL_0760 PF03788 LrgA family APJL_0761 PF04172 LrgB-like family APJL_0762 PF00149 Calcineurin-like phosphoesterase APJL_0763 PF03889 Alternative ribosome-rescue factor A APJL_0764 PF13649 Methyltransferase domain APJL_0765 PF01594 AI-2E family transporter APJL_0766 PF01933 Uncharacterised protein family UPF0052 APJL_0767 PF02547 Queuosine biosynthesis protein APJL_0768 PF03772 Competence protein APJL_0768 PF13567 Domain of unknown function (DUF4131) APJL_0768 PF00753 Metallo-beta-lactamase superfamily APJL_0769 PF00375 Sodium:dicarboxylate symporter family APJL_0770 PF01219 Prokaryotic diacylglycerol kinase APJL_0771 PF00149 Calcineurin-like phosphoesterase APJL_0771 PF02872 5'-nucleotidase, C-terminal domain APJL_0774 PF07992 Pyridine nucleotide-disulphide oxidoreductase APJL_0774 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APJL_0775 PF02817 e3 binding domain APJL_0775 PF00364 Biotin-requiring enzyme APJL_0775 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APJL_0776 PF17831 Pyruvate dehydrogenase E1 component middle domain APJL_0776 PF00456 Transketolase, thiamine diphosphate binding domain APJL_0777 PF01180 Dihydroorotate dehydrogenase APJL_0778 PF14572 Phosphoribosyl synthetase-associated domain APJL_0778 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APJL_0779 PF00288 GHMP kinases N terminal domain APJL_0779 PF08544 GHMP kinases C terminal APJL_0780 PF03550 Outer membrane lipoprotein LolB APJL_0781 PF00005 ABC transporter APJL_0781 PF00664 ABC transporter transmembrane region APJL_0782 PF04172 LrgB-like family APJL_0784 PF06733 DEAD_2 APJL_0784 PF13307 Helicase C-terminal domain APJL_0786 PF17760 UvrA interaction domain APJL_0786 PF17755 UvrA DNA-binding domain APJL_0787 PF00436 Single-strand binding protein family APJL_0793 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_0793 PF03466 LysR substrate binding domain APJL_0794 PF03060 Nitronate monooxygenase APJL_0798 PF04237 YjbR APJL_0799 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APJL_0799 PF00005 ABC transporter APJL_0800 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0800 PF12911 N-terminal TM domain of oligopeptide transport permease C APJL_0801 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0802 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APJL_0803 PF18024 Helix-turn-helix domain APJL_0803 PF00158 Sigma-54 interaction domain APJL_0804 PF13580 SIS domain APJL_0805 PF01293 Phosphoenolpyruvate carboxykinase APJL_0806 PF04977 Septum formation initiator APJL_0807 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APJL_0808 PF02542 YgbB family APJL_0810 PF00884 Sulfatase APJL_0811 PF00111 2Fe-2S iron-sulfur cluster binding domain APJL_0811 PF03476 MOSC N-terminal beta barrel domain APJL_0811 PF03473 MOSC domain APJL_0812 PF02609 Exonuclease VII small subunit APJL_0813 PF00348 Polyprenyl synthetase APJL_0815 PF01336 OB-fold nucleic acid binding domain APJL_0815 PF00152 tRNA synthetases class II (D, K and N) APJL_0816 PF00575 S1 RNA binding domain APJL_0816 PF10150 Ribonuclease E/G family APJL_0817 PF18381 YcaO cyclodehydratase C-terminal domain APJL_0817 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding APJL_0818 PF08774 VRR-NUC domain APJL_0818 PF04851 Type III restriction enzyme, res subunit APJL_0819 PF18273 Type III R-M EcoP15I C-terminal domain APJL_0819 PF01555 DNA methylase APJL_0820 PF08003 Protein of unknown function (DUF1698) APJL_0822 PF06725 3D domain APJL_0822 PF03562 MltA specific insert domain APJL_0825 PF00576 HIUase/Transthyretin family APJL_0826 PF00356 Bacterial regulatory proteins, lacI family APJL_0826 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APJL_0827 PF09335 SNARE associated Golgi protein APJL_0828 PF00986 DNA gyrase B subunit, carboxyl terminus APJL_0828 PF18053 DNA gyrase B subunit insert domain APJL_0828 PF00204 DNA gyrase B APJL_0828 PF01751 Toprim domain APJL_0828 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APJL_0829 PF01040 UbiA prenyltransferase family APJL_0830 PF08220 DeoR-like helix-turn-helix domain APJL_0830 PF00455 DeoR C terminal sensor domain APJL_0831 PF00206 Lyase APJL_0831 PF08328 Adenylosuccinate lyase C-terminal APJL_0832 PF04356 Protein of unknown function (DUF489) APJL_0833 PF00005 ABC transporter APJL_0833 PF00664 ABC transporter transmembrane region APJL_0834 PF00664 ABC transporter transmembrane region APJL_0834 PF00005 ABC transporter APJL_0836 PF04357 TamB, inner membrane protein subunit of TAM complex APJL_0837 PF01103 Surface antigen APJL_0837 PF17243 POTRA domain TamA domain 1 APJL_0838 PF04748 Divergent polysaccharide deacetylase APJL_0839 PF01551 Peptidase family M23 APJL_0840 PF00300 Histidine phosphatase superfamily (branch 1) APJL_0842 PF00485 Phosphoribulokinase / Uridine kinase family APJL_0843 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) APJL_0844 PF14278 Transcriptional regulator C-terminal region APJL_0844 PF00440 Bacterial regulatory proteins, tetR family APJL_0845 PF13533 Biotin-lipoyl like APJL_0846 PF00005 ABC transporter APJL_0848 PF02321 Outer membrane efflux protein APJL_0849 PF02233 NAD(P) transhydrogenase beta subunit APJL_0850 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APJL_0850 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APJL_0850 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APJL_0851 PF00588 SpoU rRNA Methylase family APJL_0854 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APJL_0854 PF14489 QueF-like protein APJL_0856 PF00578 AhpC/TSA family APJL_0858 PF04055 Radical SAM superfamily APJL_0858 PF06969 HemN C-terminal domain APJL_0859 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APJL_0860 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0861 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APJL_0861 PF00005 ABC transporter APJL_0862 PF00005 ABC transporter APJL_0862 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APJL_0863 PF02910 Fumarate reductase flavoprotein C-term APJL_0863 PF00890 FAD binding domain APJL_0864 PF01717 Cobalamin-independent synthase, Catalytic domain APJL_0865 PF02219 Methylenetetrahydrofolate reductase APJL_0866 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APJL_0867 PF03222 Tryptophan/tyrosine permease family APJL_0868 PF03313 Serine dehydratase alpha chain APJL_0868 PF03315 Serine dehydratase beta chain APJL_0869 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APJL_0869 PF01266 FAD dependent oxidoreductase APJL_0870 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APJL_0870 PF00218 Indole-3-glycerol phosphate synthase APJL_0871 PF12728 Helix-turn-helix domain APJL_0871 PF02661 Fic/DOC family APJL_0872 PF04287 tRNA pseudouridine synthase C APJL_0873 PF00849 RNA pseudouridylate synthase APJL_0874 PF03701 Uncharacterised protein family (UPF0181) APJL_0876 PF01928 CYTH domain APJL_0877 PF04317 YcjX-like family, DUF463 APJL_0879 PF01668 SmpB protein APJL_0880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APJL_0880 PF02403 Seryl-tRNA synthetase N-terminal domain APJL_0881 PF01546 Peptidase family M20/M25/M40 APJL_0881 PF07687 Peptidase dimerisation domain APJL_0882 PF03606 C4-dicarboxylate anaerobic carrier APJL_0883 PF03575 Peptidase family S51 APJL_0884 PF13603 Leucyl-tRNA synthetase, Domain 2 APJL_0884 PF08264 Anticodon-binding domain of tRNA APJL_0884 PF00133 tRNA synthetases class I (I, L, M and V) APJL_0885 PF04390 Lipopolysaccharide-assembly APJL_0886 PF14840 Processivity clamp loader gamma complex DNA pol III C-term APJL_0886 PF06144 DNA polymerase III, delta subunit APJL_0887 PF03884 DNA gyrase inhibitor YacG APJL_0888 PF01121 Dephospho-CoA kinase APJL_0890 PF00482 Type II secretion system (T2SS), protein F APJL_0891 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APJL_0891 PF00437 Type II/IV secretion system protein APJL_0892 PF07963 Prokaryotic N-terminal methylation motif APJL_0893 PF18073 Rubredoxin metal binding domain APJL_0895 PF00186 Dihydrofolate reductase APJL_0896 PF01472 PUA domain APJL_0896 PF00696 Amino acid kinase family APJL_0897 PF01925 Sulfite exporter TauE/SafE APJL_0898 PF00633 Helix-hairpin-helix motif APJL_0898 PF00730 HhH-GPD superfamily base excision DNA repair protein APJL_0898 PF10576 Iron-sulfur binding domain of endonuclease III APJL_0899 PF00108 Thiolase, N-terminal domain APJL_0899 PF02803 Thiolase, C-terminal domain APJL_0900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APJL_0900 PF00378 Enoyl-CoA hydratase/isomerase APJL_0900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APJL_0903 PF02634 FdhD/NarQ family APJL_0904 PF01568 Molydopterin dinucleotide binding domain APJL_0904 PF00384 Molybdopterin oxidoreductase APJL_0904 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APJL_0905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APJL_0905 PF01568 Molydopterin dinucleotide binding domain APJL_0905 PF00384 Molybdopterin oxidoreductase APJL_0906 PF13247 4Fe-4S dicluster domain APJL_0906 PF09163 Formate dehydrogenase N, transmembrane APJL_0907 PF01292 Prokaryotic cytochrome b561 APJL_0908 PF04216 Protein involved in formate dehydrogenase formation APJL_0909 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APJL_0909 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APJL_0911 PF00701 Dihydrodipicolinate synthetase family APJL_0912 PF03279 Bacterial lipid A biosynthesis acyltransferase APJL_0913 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APJL_0914 PF01416 tRNA pseudouridine synthase APJL_0915 PF01227 GTP cyclohydrolase I APJL_0918 PF00132 Bacterial transferase hexapeptide (six repeats) APJL_0918 PF12464 Maltose acetyltransferase APJL_0919 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APJL_0920 PF03466 LysR substrate binding domain APJL_0920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_0921 PF03180 NLPA lipoprotein APJL_0922 PF03180 NLPA lipoprotein APJL_0923 PF00528 Binding-protein-dependent transport system inner membrane component APJL_0924 PF00005 ABC transporter APJL_0924 PF09383 NIL domain APJL_0925 PF09190 DALR domain APJL_0925 PF01406 tRNA synthetases class I (C) catalytic domain APJL_0926 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APJL_0927 PF12627 Probable RNA and SrmB- binding site of polymerase A APJL_0927 PF01743 Poly A polymerase head domain APJL_0927 PF01966 HD domain APJL_0929 PF00665 Integrase core domain APJL_0929 PF13333 Integrase core domain APJL_0930 PF07715 TonB-dependent Receptor Plug Domain APJL_0930 PF00593 TonB dependent receptor APJL_0933 PF04384 Iron-sulphur cluster assembly APJL_0934 PF00111 2Fe-2S iron-sulfur cluster binding domain APJL_0935 PF00012 Hsp70 protein APJL_0936 PF10946 Protein of unknown function DUF2625 APJL_0938 PF07743 HSCB C-terminal oligomerisation domain APJL_0939 PF01521 Iron-sulphur cluster biosynthesis APJL_0940 PF01592 NifU-like N terminal domain APJL_0941 PF00266 Aminotransferase class-V APJL_0942 PF02082 Transcriptional regulator APJL_0943 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) APJL_0944 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APJL_0944 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APJL_0945 PF01627 Hpt domain APJL_0945 PF18415 Histidine kinase receptor ArcB trans-membrane domain APJL_0945 PF00072 Response regulator receiver domain APJL_0945 PF00512 His Kinase A (phospho-acceptor) domain APJL_0945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APJL_0945 PF00989 PAS fold APJL_0947 PF01713 Smr domain APJL_0949 PF08241 Methyltransferase domain APJL_0950 PF04301 Protein of unknown function (DUF452) APJL_0951 PF00155 Aminotransferase class I and II APJL_0952 PF00202 Aminotransferase class-III APJL_0953 PF05175 Methyltransferase small domain APJL_0954 PF03449 Transcription elongation factor, N-terminal APJL_0954 PF01272 Transcription elongation factor, GreA/GreB, C-term APJL_0955 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APJL_0961 PF06114 IrrE N-terminal-like domain APJL_0962 PF01381 Helix-turn-helix APJL_0966 PF00005 ABC transporter APJL_0966 PF00664 ABC transporter transmembrane region APJL_0966 PF03412 Peptidase C39 family APJL_0967 PF02382 N-terminal domain in RTX protein APJL_0967 PF08339 RTX C-terminal domain APJL_0967 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) APJL_0968 PF02794 RTX toxin acyltransferase family APJL_0969 PF17176 tRNA-binding domain APJL_0969 PF05127 Helicase APJL_0969 PF13718 GNAT acetyltransferase 2 APJL_0970 PF02130 Uncharacterized protein family UPF0054 APJL_0971 PF01808 AICARFT/IMPCHase bienzyme APJL_0971 PF02142 MGS-like domain APJL_0979 PF13332 Hemagglutinin repeat APJL_0979 PF05860 haemagglutination activity domain APJL_0979 PF04829 Pre-toxin domain with VENN motif APJL_0979 PF13018 Extended Signal Peptide of Type V secretion system APJL_0980 PF17287 POTRA domain APJL_0980 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APJL_0980 PF08479 POTRA domain, ShlB-type APJL_0981 PF03968 OstA-like protein APJL_0981 PF04453 LPS transport system D APJL_0982 PF04055 Radical SAM superfamily APJL_0982 PF06969 HemN C-terminal domain APJL_0984 PF04220 Der GTPase activator (YihI) APJL_0985 PF02080 TrkA-C domain APJL_0985 PF06826 Predicted Permease Membrane Region APJL_0986 PF03616 Sodium/glutamate symporter APJL_0987 PF06062 Uncharacterised protein family (UPF0231) APJL_0988 PF03710 Glutamate-ammonia ligase adenylyltransferase APJL_0988 PF08335 GlnD PII-uridylyltransferase APJL_0989 PF03795 YCII-related domain APJL_0990 PF03061 Thioesterase superfamily APJL_0991 PF04279 Intracellular septation protein A APJL_0993 PF04217 Protein of unknown function, DUF412 APJL_0995 PF01171 PP-loop family APJL_0996 PF13726 Na+-H+ antiporter family APJL_0996 PF03553 Na+/H+ antiporter family APJL_0997 PF03372 Endonuclease/Exonuclease/phosphatase family APJL_0998 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_0998 PF03466 LysR substrate binding domain APJL_1002 PF01197 Ribosomal protein L31 APJL_1003 PF00456 Transketolase, thiamine diphosphate binding domain APJL_1003 PF02780 Transketolase, C-terminal domain APJL_1003 PF02779 Transketolase, pyrimidine binding domain APJL_1004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APJL_1004 PF00183 Hsp90 protein APJL_1005 PF06628 Catalase-related immune-responsive APJL_1005 PF00199 Catalase APJL_1007 PF13333 Integrase core domain APJL_1007 PF00665 Integrase core domain APJL_1008 PF00149 Calcineurin-like phosphoesterase APJL_1009 PF02867 Ribonucleotide reductase, barrel domain APJL_1009 PF03477 ATP cone domain APJL_1009 PF00317 Ribonucleotide reductase, all-alpha domain APJL_1010 PF00268 Ribonucleotide reductase, small chain APJL_1011 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain APJL_1011 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain APJL_1012 PF00288 GHMP kinases N terminal domain APJL_1012 PF08544 GHMP kinases C terminal APJL_1012 PF10509 Galactokinase galactose-binding signature APJL_1013 PF01263 Aldose 1-epimerase APJL_1014 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APJL_1014 PF02929 Beta galactosidase small chain APJL_1014 PF16353 Domain of unknown function(DUF4981) APJL_1014 PF02837 Glycosyl hydrolases family 2, sugar binding domain APJL_1014 PF00703 Glycosyl hydrolases family 2 APJL_1018 PF10609 NUBPL iron-transfer P-loop NTPase APJL_1020 PF01914 MarC family integral membrane protein APJL_1021 PF13145 PPIC-type PPIASE domain APJL_1022 PF00999 Sodium/hydrogen exchanger family APJL_1023 PF00312 Ribosomal protein S15 APJL_1024 PF05661 Protein of unknown function (DUF808) APJL_1025 PF07219 HemY protein N-terminus APJL_1026 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase APJL_1027 PF02602 Uroporphyrinogen-III synthase HemD APJL_1028 PF03900 Porphobilinogen deaminase, C-terminal domain APJL_1028 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APJL_1029 PF00171 Aldehyde dehydrogenase family APJL_1029 PF00465 Iron-containing alcohol dehydrogenase APJL_1030 PF00118 TCP-1/cpn60 chaperonin family APJL_1031 PF00166 Chaperonin 10 Kd subunit APJL_1032 PF01048 Phosphorylase superfamily APJL_1033 PF01791 DeoC/LacD family aldolase APJL_1034 PF07670 Nucleoside recognition APJL_1034 PF07662 Na+ dependent nucleoside transporter C-terminus APJL_1034 PF01773 Na+ dependent nucleoside transporter N-terminus APJL_1036 PF01081 KDPG and KHG aldolase APJL_1037 PF00294 pfkB family carbohydrate kinase APJL_1038 PF02614 Glucuronate isomerase APJL_1039 PF13802 Galactose mutarotase-like APJL_1039 PF17137 Domain of unknown function (DUF5110) APJL_1039 PF01055 Glycosyl hydrolases family 31 APJL_1039 PF16338 Domain of unknown function (DUF4968) APJL_1040 PF07729 FCD domain APJL_1040 PF00392 Bacterial regulatory proteins, gntR family APJL_1042 PF01641 SelR domain APJL_1042 PF01625 Peptide methionine sulfoxide reductase APJL_1043 PF00535 Glycosyl transferase family 2 APJL_1044 PF00535 Glycosyl transferase family 2 APJL_1046 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) APJL_1048 PF04230 Polysaccharide pyruvyl transferase APJL_1049 PF02698 DUF218 domain APJL_1050 PF00271 Helicase conserved C-terminal domain APJL_1050 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APJL_1050 PF18074 Primosomal protein N C-terminal domain APJL_1050 PF17764 3′ DNA-binding domain (3′BD) APJL_1050 PF00270 DEAD/DEAH box helicase APJL_1051 PF00800 Prephenate dehydratase APJL_1051 PF01817 Chorismate mutase type II APJL_1052 PF01432 Peptidase family M3 APJL_1053 PF04055 Radical SAM superfamily APJL_1054 PF01228 Glycine radical APJL_1054 PF02901 Pyruvate formate lyase-like APJL_1055 PF01226 Formate/nitrite transporter APJL_1057 PF01435 Peptidase family M48 APJL_1058 PF00817 impB/mucB/samB family APJL_1058 PF11798 IMS family HHH motif APJL_1058 PF11799 impB/mucB/samB family C-terminal domain APJL_1059 PF03956 Lysine exporter LysO APJL_1060 PF00425 chorismate binding enzyme APJL_1061 PF00155 Aminotransferase class I and II APJL_1062 PF00892 EamA-like transporter family APJL_1063 PF00892 EamA-like transporter family APJL_1064 PF01810 LysE type translocator APJL_1065 PF00593 TonB dependent receptor APJL_1065 PF04886 PT repeat APJL_1065 PF07715 TonB-dependent Receptor Plug Domain APJL_1066 PF01243 Pyridoxamine 5'-phosphate oxidase APJL_1068 PF03918 Cytochrome C biogenesis protein APJL_1069 PF08534 Redoxin APJL_1070 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APJL_1070 PF01578 Cytochrome C assembly protein APJL_1071 PF02254 TrkA-N domain APJL_1071 PF00999 Sodium/hydrogen exchanger family APJL_1072 PF12633 Adenylate cyclase NT domain APJL_1072 PF01295 Adenylate cyclase, class-I APJL_1073 PF02801 Beta-ketoacyl synthase, C-terminal domain APJL_1073 PF00109 Beta-ketoacyl synthase, N-terminal domain APJL_1075 PF00665 Integrase core domain APJL_1075 PF13333 Integrase core domain APJL_1076 PF04076 Bacterial OB fold (BOF) protein APJL_1079 PF00486 Transcriptional regulatory protein, C terminal APJL_1079 PF00072 Response regulator receiver domain APJL_1080 PF08521 Two-component sensor kinase N-terminal APJL_1080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APJL_1080 PF00512 His Kinase A (phospho-acceptor) domain APJL_1081 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) APJL_1082 PF02699 Preprotein translocase subunit APJL_1083 PF13721 SecD export protein N-terminal TM region APJL_1083 PF02355 Protein export membrane protein APJL_1083 PF07549 SecD/SecF GG Motif APJL_1084 PF02355 Protein export membrane protein APJL_1084 PF07549 SecD/SecF GG Motif APJL_1085 PF00210 Ferritin-like domain APJL_1086 PF00210 Ferritin-like domain APJL_1087 PF00860 Permease family APJL_1088 PF02545 Maf-like protein APJL_1090 PF02568 Thiamine biosynthesis protein (ThiI) APJL_1090 PF02926 THUMP domain APJL_1091 PF00709 Adenylosuccinate synthetase APJL_1092 PF01145 SPFH domain / Band 7 family APJL_1093 PF01145 SPFH domain / Band 7 family APJL_1094 PF00085 Thioredoxin APJL_1095 PF00860 Permease family APJL_1096 PF02773 S-adenosylmethionine synthetase, C-terminal domain APJL_1096 PF02772 S-adenosylmethionine synthetase, central domain APJL_1096 PF00438 S-adenosylmethionine synthetase, N-terminal domain APJL_1098 PF13520 Amino acid permease APJL_1099 PF13520 Amino acid permease APJL_1101 PF01546 Peptidase family M20/M25/M40 APJL_1101 PF07687 Peptidase dimerisation domain APJL_1102 PF03922 OmpW family APJL_1103 PF17871 AAA lid domain APJL_1103 PF02861 Clp amino terminal domain, pathogenicity island component APJL_1103 PF10431 C-terminal, D2-small domain, of ClpB protein APJL_1103 PF00004 ATPase family associated with various cellular activities (AAA) APJL_1103 PF07724 AAA domain (Cdc48 subfamily) APJL_1104 PF01758 Sodium Bile acid symporter family APJL_1105 PF03960 ArsC family APJL_1107 PF00206 Lyase APJL_1107 PF10415 Fumarase C C-terminus APJL_1109 PF02769 AIR synthase related protein, C-terminal domain APJL_1109 PF00586 AIR synthase related protein, N-terminal domain APJL_1110 PF00746 LPXTG cell wall anchor motif APJL_1110 PF04650 YSIRK type signal peptide APJL_1110 PF07501 G5 domain APJL_1110 PF00728 Glycosyl hydrolase family 20, catalytic domain APJL_1111 PF06508 Queuosine biosynthesis protein QueC APJL_1112 PF01242 6-pyruvoyl tetrahydropterin synthase APJL_1113 PF04055 Radical SAM superfamily APJL_1116 PF02789 Cytosol aminopeptidase family, N-terminal domain APJL_1116 PF00883 Cytosol aminopeptidase family, catalytic domain APJL_1118 PF03739 Lipopolysaccharide export system permease LptF/LptG APJL_1119 PF03739 Lipopolysaccharide export system permease LptF/LptG APJL_1120 PF07733 Bacterial DNA polymerase III alpha NTPase domain APJL_1120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APJL_1120 PF14579 Helix-hairpin-helix motif APJL_1120 PF02811 PHP domain APJL_1120 PF01336 OB-fold nucleic acid binding domain APJL_1122 PF01370 NAD dependent epimerase/dehydratase family APJL_1122 PF02222 ATP-grasp domain APJL_1125 PF02222 ATP-grasp domain APJL_1125 PF01370 NAD dependent epimerase/dehydratase family APJL_1126 PF01553 Acyltransferase APJL_1127 PF01726 LexA DNA binding domain APJL_1127 PF00717 Peptidase S24-like APJL_1128 PF02976 DNA mismatch repair enzyme MutH APJL_1129 PF03741 Integral membrane protein TerC family APJL_1130 PF00933 Glycosyl hydrolase family 3 N terminal domain APJL_1131 PF05958 tRNA (Uracil-5-)-methyltransferase APJL_1132 PF00113 Enolase, C-terminal TIM barrel domain APJL_1132 PF03952 Enolase, N-terminal domain APJL_1133 PF00293 NUDIX domain APJL_1134 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) APJL_1135 PF16124 RecQ zinc-binding APJL_1135 PF09382 RQC domain APJL_1135 PF00570 HRDC domain APJL_1135 PF00271 Helicase conserved C-terminal domain APJL_1135 PF00270 DEAD/DEAH box helicase APJL_1136 PF01491 Frataxin-like domain APJL_1137 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) APJL_1138 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) APJL_1139 PF00814 Glycoprotease family APJL_1140 PF13525 Outer membrane lipoprotein APJL_1141 PF00849 RNA pseudouridylate synthase APJL_1141 PF01479 S4 domain APJL_1142 PF14256 YwiC-like protein APJL_1143 PF00365 Phosphofructokinase APJL_1144 PF00266 Aminotransferase class-V APJL_1145 PF00565 Staphylococcal nuclease homologue APJL_1146 PF01235 Sodium:alanine symporter family APJL_1147 PF01594 AI-2E family transporter APJL_1150 PF04932 O-Antigen ligase APJL_1151 PF00534 Glycosyl transferases group 1 APJL_1151 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APJL_1152 PF01467 Cytidylyltransferase-like APJL_1153 PF00929 Exonuclease APJL_1154 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APJL_1155 PF01476 LysM domain APJL_1155 PF01520 N-acetylmuramoyl-L-alanine amidase APJL_1156 PF00342 Phosphoglucose isomerase APJL_1157 PF04380 Membrane fusogenic activity APJL_1158 PF08501 Shikimate dehydrogenase substrate binding domain APJL_1158 PF01488 Shikimate / quinate 5-dehydrogenase APJL_1158 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APJL_1159 PF01300 Telomere recombination APJL_1160 PF01396 Topoisomerase DNA binding C4 zinc finger APJL_1162 PF02631 RecX family APJL_1163 PF00154 recA bacterial DNA recombination protein APJL_1164 PF01063 Amino-transferase class IV APJL_1165 PF00425 chorismate binding enzyme APJL_1166 PF02646 RmuC family APJL_1167 PF00117 Glutamine amidotransferase class-I APJL_1168 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APJL_1168 PF03625 Domain of unknown function DUF302 APJL_1169 PF01336 OB-fold nucleic acid binding domain APJL_1169 PF00152 tRNA synthetases class II (D, K and N) APJL_1169 PF02938 GAD domain APJL_1170 PF00293 NUDIX domain APJL_1171 PF01709 Transcriptional regulator APJL_1173 PF02075 Crossover junction endodeoxyribonuclease RuvC APJL_1174 PF05193 Peptidase M16 inactive domain APJL_1174 PF00675 Insulinase (Peptidase family M16) APJL_1175 PF01717 Cobalamin-independent synthase, Catalytic domain APJL_1175 PF08267 Cobalamin-independent synthase, N-terminal domain APJL_1176 PF00939 Sodium:sulfate symporter transmembrane region APJL_1177 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_1177 PF03466 LysR substrate binding domain APJL_1178 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B APJL_1179 PF01479 S4 domain APJL_1179 PF00849 RNA pseudouridylate synthase APJL_1180 PF01300 Telomere recombination APJL_1182 PF04261 Dyp-type peroxidase family APJL_1183 PF04715 Anthranilate synthase component I, N terminal region APJL_1183 PF00425 chorismate binding enzyme APJL_1184 PF00117 Glutamine amidotransferase class-I APJL_1185 PF00591 Glycosyl transferase family, a/b domain APJL_1185 PF02885 Glycosyl transferase family, helical bundle domain APJL_1186 PF08241 Methyltransferase domain APJL_1187 PF16036 Chalcone isomerase-like APJL_1188 PF04325 Protein of unknown function (DUF465) APJL_1189 PF01281 Ribosomal protein L9, N-terminal domain APJL_1189 PF03948 Ribosomal protein L9, C-terminal domain APJL_1190 PF01084 Ribosomal protein S18 APJL_1191 PF00436 Single-strand binding protein family APJL_1192 PF01250 Ribosomal protein S6 APJL_1193 PF02844 Phosphoribosylglycinamide synthetase, N domain APJL_1193 PF02843 Phosphoribosylglycinamide synthetase, C domain APJL_1193 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APJL_1194 PF04973 Nicotinamide mononucleotide transporter APJL_1195 PF09976 Tetratricopeptide repeat-like domain APJL_1196 PF13393 Histidyl-tRNA synthetase APJL_1196 PF03129 Anticodon binding domain APJL_1198 PF04551 GcpE protein APJL_1199 PF13464 Domain of unknown function (DUF4115) APJL_1200 PF00916 Sulfate permease family APJL_1200 PF01740 STAS domain APJL_1201 PF00206 Lyase APJL_1201 PF14698 Argininosuccinate lyase C-terminal APJL_1202 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APJL_1202 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APJL_1203 PF00999 Sodium/hydrogen exchanger family APJL_1203 PF02254 TrkA-N domain APJL_1206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_1206 PF03466 LysR substrate binding domain APJL_1209 PF06719 AraC-type transcriptional regulator N-terminus APJL_1209 PF12833 Helix-turn-helix domain APJL_1210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_1210 PF03466 LysR substrate binding domain APJL_1211 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APJL_1212 PF00296 Luciferase-like monooxygenase APJL_1213 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APJL_1213 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APJL_1214 PF00881 Nitroreductase family APJL_1215 PF01914 MarC family integral membrane protein APJL_1217 PF00756 Putative esterase APJL_1218 PF02798 Glutathione S-transferase, N-terminal domain APJL_1221 PF00107 Zinc-binding dehydrogenase APJL_1221 PF08240 Alcohol dehydrogenase GroES-like domain APJL_1222 PF02028 BCCT, betaine/carnitine/choline family transporter APJL_1225 PF03595 Voltage-dependent anion channel APJL_1226 PF13419 Haloacid dehalogenase-like hydrolase APJL_1228 PF00005 ABC transporter APJL_1228 PF00664 ABC transporter transmembrane region APJL_1229 PF02664 S-Ribosylhomocysteinase (LuxS) APJL_1230 PF02470 MlaD protein APJL_1231 PF01475 Ferric uptake regulator family APJL_1232 PF00258 Flavodoxin APJL_1233 PF01402 Ribbon-helix-helix protein, copG family APJL_1234 PF04073 Aminoacyl-tRNA editing domain APJL_1236 PF00860 Permease family APJL_1237 PF02635 DsrE/DsrF-like family APJL_1239 PF01176 Translation initiation factor 1A / IF-1 APJL_1240 PF10144 Bacterial virulence factor haemolysin APJL_1241 PF18429 Domain of unknown function (DUF5609) APJL_1242 PF04461 Protein of unknown function (DUF520) APJL_1244 PF00343 Carbohydrate phosphorylase APJL_1245 PF00196 Bacterial regulatory proteins, luxR family APJL_1245 PF17874 MalT-like TPR region APJL_1246 PF07148 Maltose operon periplasmic protein precursor (MalM) APJL_1247 PF02264 LamB porin APJL_1248 PF17912 MalK OB fold domain APJL_1248 PF00005 ABC transporter APJL_1249 PF01547 Bacterial extracellular solute-binding protein APJL_1250 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1250 PF14785 Maltose transport system permease protein MalF P2 domain APJL_1251 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1252 PF02446 4-alpha-glucanotransferase APJL_1253 PF02554 Carbon starvation protein CstA APJL_1254 PF01026 TatD related DNase APJL_1255 PF07992 Pyridine nucleotide-disulphide oxidoreductase APJL_1255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APJL_1256 PF03350 Uncharacterized protein family, UPF0114 APJL_1257 PF00881 Nitroreductase family APJL_1260 PF00005 ABC transporter APJL_1261 PF01116 Fructose-bisphosphate aldolase class-II APJL_1262 PF00162 Phosphoglycerate kinase APJL_1263 PF00939 Sodium:sulfate symporter transmembrane region APJL_1264 PF00939 Sodium:sulfate symporter transmembrane region APJL_1265 PF00939 Sodium:sulfate symporter transmembrane region APJL_1266 PF00204 DNA gyrase B APJL_1266 PF00986 DNA gyrase B subunit, carboxyl terminus APJL_1266 PF01751 Toprim domain APJL_1266 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APJL_1267 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APJL_1267 PF00512 His Kinase A (phospho-acceptor) domain APJL_1268 PF00072 Response regulator receiver domain APJL_1268 PF00486 Transcriptional regulatory protein, C terminal APJL_1269 PF00005 ABC transporter APJL_1270 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1271 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1272 PF12849 PBP superfamily domain APJL_1273 PF09278 MerR, DNA binding APJL_1273 PF00376 MerR family regulatory protein APJL_1275 PF00403 Heavy-metal-associated domain APJL_1276 PF00403 Heavy-metal-associated domain APJL_1277 PF00106 short chain dehydrogenase APJL_1278 PF00881 Nitroreductase family APJL_1279 PF01343 Peptidase family S49 APJL_1280 PF00445 Ribonuclease T2 family APJL_1281 PF10263 SprT-like family APJL_1281 PF17283 SprT-like zinc ribbon domain APJL_1282 PF07992 Pyridine nucleotide-disulphide oxidoreductase APJL_1283 PF17674 HHH domain APJL_1283 PF16921 Tex protein YqgF-like domain APJL_1283 PF00575 S1 RNA binding domain APJL_1283 PF09371 Tex-like protein N-terminal domain APJL_1285 PF04055 Radical SAM superfamily APJL_1286 PF00749 tRNA synthetases class I (E and Q), catalytic domain APJL_1287 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APJL_1288 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system APJL_1289 PF03966 Trm112p-like protein APJL_1290 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APJL_1291 PF07724 AAA domain (Cdc48 subfamily) APJL_1291 PF10431 C-terminal, D2-small domain, of ClpB protein APJL_1291 PF06689 ClpX C4-type zinc finger APJL_1292 PF00574 Clp protease APJL_1293 PF02657 Fe-S metabolism associated domain APJL_1294 PF00929 Exonuclease APJL_1295 PF00005 ABC transporter APJL_1295 PF12848 ABC transporter APJL_1296 PF02627 Carboxymuconolactone decarboxylase family APJL_1299 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APJL_1300 PF01722 BolA-like protein APJL_1302 PF05494 MlaC protein APJL_1303 PF02470 MlaD protein APJL_1304 PF02405 Permease MlaE APJL_1305 PF00005 ABC transporter APJL_1306 PF00595 PDZ domain APJL_1307 PF01370 NAD dependent epimerase/dehydratase family APJL_1307 PF08338 Domain of unknown function (DUF1731) APJL_1308 PF02863 Arginine repressor, C-terminal domain APJL_1308 PF01316 Arginine repressor, DNA binding domain APJL_1309 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APJL_1309 PF00056 lactate/malate dehydrogenase, NAD binding domain APJL_1311 PF05191 Adenylate kinase, active site lid APJL_1313 PF07690 Major Facilitator Superfamily APJL_1314 PF01370 NAD dependent epimerase/dehydratase family APJL_1315 PF01653 NAD-dependent DNA ligase adenylation domain APJL_1315 PF00533 BRCA1 C Terminus (BRCT) domain APJL_1315 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APJL_1315 PF12826 Helix-hairpin-helix motif APJL_1315 PF03120 NAD-dependent DNA ligase OB-fold domain APJL_1316 PF04354 ZipA, C-terminal FtsZ-binding domain APJL_1319 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APJL_1319 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APJL_1321 PF01177 Asp/Glu/Hydantoin racemase APJL_1322 PF07690 Major Facilitator Superfamily APJL_1323 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APJL_1324 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APJL_1324 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APJL_1325 PF00459 Inositol monophosphatase family APJL_1326 PF00293 NUDIX domain APJL_1327 PF01479 S4 domain APJL_1328 PF01430 Hsp33 protein APJL_1329 PF03605 Anaerobic c4-dicarboxylate membrane transporter APJL_1331 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APJL_1331 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APJL_1332 PF00696 Amino acid kinase family APJL_1333 PF00367 phosphotransferase system, EIIB APJL_1333 PF02378 Phosphotransferase system, EIIC APJL_1334 PF00005 ABC transporter APJL_1335 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1336 PF00381 PTS HPr component phosphorylation site APJL_1337 PF02896 PEP-utilising enzyme, TIM barrel domain APJL_1337 PF05524 PEP-utilising enzyme, N-terminal APJL_1337 PF00391 PEP-utilising enzyme, mobile domain APJL_1338 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APJL_1339 PF01938 TRAM domain APJL_1339 PF00919 Uncharacterized protein family UPF0004 APJL_1339 PF04055 Radical SAM superfamily APJL_1340 PF00580 UvrD/REP helicase N-terminal domain APJL_1340 PF13361 UvrD-like helicase C-terminal domain APJL_1341 PF02492 CobW/HypB/UreG, nucleotide-binding domain APJL_1342 PF01924 Hydrogenase formation hypA family APJL_1343 PF00586 AIR synthase related protein, N-terminal domain APJL_1343 PF02769 AIR synthase related protein, C-terminal domain APJL_1344 PF13533 Biotin-lipoyl like APJL_1345 PF03412 Peptidase C39 family APJL_1345 PF00005 ABC transporter APJL_1345 PF00664 ABC transporter transmembrane region APJL_1346 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) APJL_1346 PF08339 RTX C-terminal domain APJL_1346 PF02382 N-terminal domain in RTX protein APJL_1347 PF02794 RTX toxin acyltransferase family APJL_1348 PF01300 Telomere recombination APJL_1348 PF00708 Acylphosphatase APJL_1348 PF17788 HypF Kae1-like domain APJL_1348 PF07503 HypF finger APJL_1349 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APJL_1349 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal APJL_1350 PF13247 4Fe-4S dicluster domain APJL_1351 PF03916 Polysulphide reductase, NrfD APJL_1352 PF00374 Nickel-dependent hydrogenase APJL_1353 PF01750 Hydrogenase maturation protease APJL_1354 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE APJL_1355 PF01455 HupF/HypC family APJL_1356 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA APJL_1357 PF17757 UvrB interaction domain APJL_1357 PF00270 DEAD/DEAH box helicase APJL_1357 PF02559 CarD-like/TRCF domain APJL_1357 PF03461 TRCF domain APJL_1357 PF00271 Helicase conserved C-terminal domain APJL_1358 PF01433 Peptidase family M1 domain APJL_1358 PF11940 Domain of unknown function (DUF3458) Ig-like fold APJL_1358 PF17432 Domain of unknown function (DUF3458_C) ARM repeats APJL_1359 PF02660 Glycerol-3-phosphate acyltransferase APJL_1360 PF02152 Dihydroneopterin aldolase APJL_1361 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APJL_1361 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region APJL_1362 PF18075 FtsX extracellular domain APJL_1363 PF00005 ABC transporter APJL_1364 PF02881 SRP54-type protein, helical bundle domain APJL_1364 PF00448 SRP54-type protein, GTPase domain APJL_1366 PF04269 Protein of unknown function, DUF440 APJL_1367 PF01613 Flavin reductase like domain APJL_1368 PF03848 Tellurite resistance protein TehB APJL_1368 PF09313 Domain of unknown function (DUF1971) APJL_1369 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1370 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1371 PF00497 Bacterial extracellular solute-binding proteins, family 3 APJL_1372 PF00005 ABC transporter APJL_1373 PF01161 Phosphatidylethanolamine-binding protein APJL_1374 PF01699 Sodium/calcium exchanger protein APJL_1375 PF01381 Helix-turn-helix APJL_1377 PF02683 Cytochrome C biogenesis protein transmembrane region APJL_1377 PF13098 Thioredoxin-like domain APJL_1377 PF11412 Disulphide bond corrector protein DsbC APJL_1378 PF04315 Elongation factor P hydroxylase APJL_1379 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APJL_1380 PF04348 LppC putative lipoprotein APJL_1381 PF02021 Uncharacterised protein family UPF0102 APJL_1382 PF13580 SIS domain APJL_1383 PF04972 BON domain APJL_1384 PF00497 Bacterial extracellular solute-binding proteins, family 3 APJL_1384 PF01464 Transglycosylase SLT domain APJL_1385 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APJL_1385 PF01578 Cytochrome C assembly protein APJL_1386 PF03100 CcmE APJL_1387 PF04995 Heme exporter protein D (CcmD) APJL_1388 PF01578 Cytochrome C assembly protein APJL_1389 PF03379 CcmB protein APJL_1390 PF00005 ABC transporter APJL_1391 PF00308 Bacterial dnaA protein APJL_1393 PF04277 Oxaloacetate decarboxylase, gamma chain APJL_1394 PF02436 Conserved carboxylase domain APJL_1394 PF00682 HMGL-like APJL_1394 PF00364 Biotin-requiring enzyme APJL_1395 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit APJL_1396 PF08274 PhnA Zinc-Ribbon APJL_1396 PF03831 PhnA domain APJL_1397 PF14376 Haem-binding domain APJL_1397 PF00034 Cytochrome c APJL_1397 PF03150 Di-haem cytochrome c peroxidase APJL_1398 PF02594 Uncharacterised ACR, YggU family COG1872 APJL_1399 PF02325 YGGT family APJL_1400 PF04320 Protein with unknown function (DUF469) APJL_1401 PF02390 Putative methyltransferase APJL_1402 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APJL_1402 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APJL_1403 PF02504 Fatty acid synthesis protein APJL_1404 PF01783 Ribosomal L32p protein family APJL_1405 PF02620 Large ribosomal RNA subunit accumulation protein YceD APJL_1406 PF01578 Cytochrome C assembly protein APJL_1407 PF03471 Transporter associated domain APJL_1407 PF01595 Cyclin M transmembrane N-terminal domain APJL_1407 PF00571 CBS domain APJL_1408 PF00209 Sodium:neurotransmitter symporter family APJL_1410 PF03610 PTS system fructose IIA component APJL_1410 PF03830 PTS system sorbose subfamily IIB component APJL_1411 PF03609 PTS system sorbose-specific iic component APJL_1412 PF03613 PTS system mannose/fructose/sorbose family IID component APJL_1413 PF06173 Protein of unknown function (DUF986) APJL_1414 PF01238 Phosphomannose isomerase type I APJL_1417 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1418 PF08402 TOBE domain APJL_1418 PF00005 ABC transporter APJL_1419 PF01225 Mur ligase family, catalytic domain APJL_1419 PF08245 Mur ligase middle domain APJL_1419 PF02875 Mur ligase family, glutamate ligase domain APJL_1420 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APJL_1422 PF03144 Elongation factor Tu domain 2 APJL_1422 PF03143 Elongation factor Tu C-terminal domain APJL_1422 PF00009 Elongation factor Tu GTP binding domain APJL_1425 PF00177 Ribosomal protein S7p/S5e APJL_1426 PF00164 Ribosomal protein S12/S23 APJL_1427 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APJL_1428 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APJL_1430 PF04225 Opacity-associated protein A LysM-like domain APJL_1430 PF08525 Opacity-associated protein A N-terminal motif APJL_1432 PF02666 Phosphatidylserine decarboxylase APJL_1433 PF04851 Type III restriction enzyme, res subunit APJL_1433 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APJL_1433 PF00271 Helicase conserved C-terminal domain APJL_1433 PF08463 EcoEI R protein C-terminal APJL_1434 PF12161 HsdM N-terminal domain APJL_1434 PF02384 N-6 DNA Methylase APJL_1436 PF01420 Type I restriction modification DNA specificity domain APJL_1437 PF00589 Phage integrase family APJL_1437 PF02899 Phage integrase, N-terminal SAM-like domain APJL_1439 PF04262 Glutamate-cysteine ligase APJL_1439 PF18419 ATP-grasp-like domain APJL_1439 PF02655 ATP-grasp domain APJL_1441 PF03222 Tryptophan/tyrosine permease family APJL_1442 PF04175 Protein of unknown function (DUF406) APJL_1445 PF00501 AMP-binding enzyme APJL_1446 PF06039 Malate:quinone oxidoreductase (Mqo) APJL_1450 PF02653 Branched-chain amino acid transport system / permease component APJL_1451 PF00005 ABC transporter APJL_1452 PF13407 Periplasmic binding protein domain APJL_1453 PF00691 OmpA family APJL_1453 PF01389 OmpA-like transmembrane domain APJL_1454 PF02913 FAD linked oxidases, C-terminal domain APJL_1454 PF13183 4Fe-4S dicluster domain APJL_1454 PF01565 FAD binding domain APJL_1455 PF03061 Thioesterase superfamily APJL_1456 PF02096 60Kd inner membrane protein APJL_1456 PF14849 YidC periplasmic domain APJL_1457 PF03264 NapC/NirT cytochrome c family, N-terminal region APJL_1458 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) APJL_1459 PF12837 4Fe-4S binding domain APJL_1459 PF12801 4Fe-4S binding domain APJL_1460 PF12838 4Fe-4S dicluster domain APJL_1460 PF12800 4Fe-4S binding domain APJL_1461 PF00384 Molybdopterin oxidoreductase APJL_1461 PF01568 Molydopterin dinucleotide binding domain APJL_1461 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APJL_1461 PF10518 TAT (twin-arginine translocation) pathway signal sequence APJL_1463 PF13187 4Fe-4S dicluster domain APJL_1463 PF12838 4Fe-4S dicluster domain APJL_1464 PF02525 Flavodoxin-like fold APJL_1465 PF00665 Integrase core domain APJL_1465 PF13333 Integrase core domain APJL_1468 PF00575 S1 RNA binding domain APJL_1468 PF12111 Polyribonucleotide phosphorylase C terminal APJL_1468 PF10150 Ribonuclease E/G family APJL_1470 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family APJL_1471 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APJL_1472 PF01297 Zinc-uptake complex component A periplasmic APJL_1474 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APJL_1474 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APJL_1475 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APJL_1476 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APJL_1476 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APJL_1476 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APJL_1476 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APJL_1477 PF00585 C-terminal regulatory domain of Threonine dehydratase APJL_1477 PF00291 Pyridoxal-phosphate dependent enzyme APJL_1478 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APJL_1479 PF00230 Major intrinsic protein APJL_1481 PF18389 TrmO C-terminal domain APJL_1481 PF01980 tRNA-methyltransferase O APJL_1482 PF06250 YhcG PDDEXK nuclease domain APJL_1482 PF17761 DUF1016 N-terminal domain APJL_1483 PF01040 UbiA prenyltransferase family APJL_1484 PF01521 Iron-sulphur cluster biosynthesis APJL_1487 PF13439 Glycosyltransferase Family 4 APJL_1487 PF00534 Glycosyl transferases group 1 APJL_1491 PF01943 Polysaccharide biosynthesis protein APJL_1492 PF03275 UDP-galactopyranose mutase APJL_1493 PF02397 Bacterial sugar transferase APJL_1494 PF01757 Acyltransferase family APJL_1497 PF16363 GDP-mannose 4,6 dehydratase APJL_1498 PF01165 Ribosomal protein S21 APJL_1499 PF01807 CHC2 zinc finger APJL_1499 PF08275 DNA primase catalytic core, N-terminal domain APJL_1499 PF08278 DNA primase DnaG DnaB-binding APJL_1499 PF10410 DnaB-helicase binding domain of primase APJL_1500 PF04546 Sigma-70, non-essential region APJL_1500 PF03979 Sigma-70 factor, region 1.1 APJL_1500 PF00140 Sigma-70 factor, region 1.2 APJL_1500 PF04542 Sigma-70 region 2 APJL_1500 PF04545 Sigma-70, region 4 APJL_1500 PF04539 Sigma-70 region 3 APJL_1501 PF00579 tRNA synthetases class I (W and Y) APJL_1501 PF01479 S4 domain APJL_1503 PF17876 Cold shock domain APJL_1503 PF08206 Ribonuclease B OB domain APJL_1503 PF00773 RNB domain APJL_1503 PF08461 Ribonuclease R winged-helix domain APJL_1503 PF00575 S1 RNA binding domain APJL_1504 PF00578 AhpC/TSA family APJL_1505 PF00440 Bacterial regulatory proteins, tetR family APJL_1506 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_1506 PF03466 LysR substrate binding domain APJL_1507 PF00462 Glutaredoxin APJL_1507 PF08534 Redoxin APJL_1510 PF08543 Phosphomethylpyrimidine kinase APJL_1511 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APJL_1512 PF07731 Multicopper oxidase APJL_1512 PF07732 Multicopper oxidase APJL_1513 PF01553 Acyltransferase APJL_1514 PF08534 Redoxin APJL_1515 PF01926 50S ribosome-binding GTPase APJL_1515 PF12631 MnmE helical domain APJL_1515 PF10396 GTP-binding protein TrmE N-terminus APJL_1516 PF05167 Uncharacterised ACR (DUF711) APJL_1518 PF02678 Pirin APJL_1518 PF17954 Quercetinase C-terminal cupin domain APJL_1519 PF00210 Ferritin-like domain APJL_1522 PF12805 FUSC-like inner membrane protein yccS APJL_1523 PF02142 MGS-like domain APJL_1524 PF14821 Threonine synthase N terminus APJL_1524 PF00291 Pyridoxal-phosphate dependent enzyme APJL_1526 PF13333 Integrase core domain APJL_1526 PF00665 Integrase core domain APJL_1527 PF10458 Valyl tRNA synthetase tRNA binding arm APJL_1527 PF00133 tRNA synthetases class I (I, L, M and V) APJL_1527 PF08264 Anticodon-binding domain of tRNA APJL_1530 PF13673 Acetyltransferase (GNAT) domain APJL_1531 PF04364 DNA polymerase III chi subunit, HolC APJL_1532 PF01476 LysM domain APJL_1533 PF05697 Bacterial trigger factor protein (TF) APJL_1533 PF05698 Bacterial trigger factor protein (TF) C-terminus APJL_1533 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APJL_1534 PF00581 Rhodanese-like domain APJL_1535 PF02556 Preprotein translocase subunit SecB APJL_1536 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APJL_1536 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APJL_1537 PF06426 Serine acetyltransferase, N-terminal APJL_1537 PF00132 Bacterial transferase hexapeptide (six repeats) APJL_1538 PF03143 Elongation factor Tu C-terminal domain APJL_1538 PF03144 Elongation factor Tu domain 2 APJL_1538 PF00009 Elongation factor Tu GTP binding domain APJL_1539 PF00485 Phosphoribulokinase / Uridine kinase family APJL_1540 PF08534 Redoxin APJL_1541 PF03918 Cytochrome C biogenesis protein APJL_1542 PF03918 Cytochrome C biogenesis protein APJL_1543 PF00994 Probable molybdopterin binding domain APJL_1544 PF00543 Nitrogen regulatory protein P-II APJL_1545 PF01252 Signal peptidase (SPase) II APJL_1546 PF02401 LytB protein APJL_1547 PF03937 Flavinator of succinate dehydrogenase APJL_1549 PF04055 Radical SAM superfamily APJL_1550 PF02798 Glutathione S-transferase, N-terminal domain APJL_1550 PF00043 Glutathione S-transferase, C-terminal domain APJL_1551 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APJL_1551 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APJL_1553 PF02313 Fumarate reductase subunit D APJL_1554 PF02300 Fumarate reductase subunit C APJL_1555 PF13085 2Fe-2S iron-sulfur cluster binding domain APJL_1555 PF13183 4Fe-4S dicluster domain APJL_1556 PF02910 Fumarate reductase flavoprotein C-term APJL_1556 PF00890 FAD binding domain APJL_1557 PF00152 tRNA synthetases class II (D, K and N) APJL_1558 PF01678 Diaminopimelate epimerase APJL_1559 PF03605 Anaerobic c4-dicarboxylate membrane transporter APJL_1560 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APJL_1562 PF03702 Anhydro-N-acetylmuramic acid kinase APJL_1563 PF01380 SIS domain APJL_1567 PF01523 Putative modulator of DNA gyrase APJL_1568 PF01171 PP-loop family APJL_1568 PF09179 TilS substrate binding domain APJL_1568 PF11734 TilS substrate C-terminal domain APJL_1570 PF00589 Phage integrase family APJL_1570 PF02899 Phage integrase, N-terminal SAM-like domain APJL_1571 PF03808 Glycosyl transferase WecB/TagA/CpsF family APJL_1572 PF06899 WzyE protein, O-antigen assembly polymerase APJL_1573 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 APJL_1574 PF03063 Prismane/CO dehydrogenase family APJL_1575 PF00175 Oxidoreductase NAD-binding domain APJL_1575 PF00111 2Fe-2S iron-sulfur cluster binding domain APJL_1575 PF00970 Oxidoreductase FAD-binding domain APJL_1576 PF01943 Polysaccharide biosynthesis protein APJL_1577 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APJL_1579 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APJL_1579 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APJL_1579 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APJL_1580 PF02350 UDP-N-acetylglucosamine 2-epimerase APJL_1582 PF00953 Glycosyl transferase family 4 APJL_1583 PF00202 Aminotransferase class-III APJL_1585 PF03023 Lipid II flippase MurJ APJL_1586 PF01649 Ribosomal protein S20 APJL_1587 PF02080 TrkA-C domain APJL_1587 PF02254 TrkA-N domain APJL_1588 PF01029 NusB family APJL_1588 PF01189 16S rRNA methyltransferase RsmB/F APJL_1589 PF09107 Elongation factor SelB, winged helix APJL_1589 PF00009 Elongation factor Tu GTP binding domain APJL_1589 PF03144 Elongation factor Tu domain 2 APJL_1589 PF09106 Elongation factor SelB, winged helix APJL_1590 PF03841 L-seryl-tRNA selenium transferase APJL_1591 PF00258 Flavodoxin APJL_1594 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APJL_1594 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APJL_1597 PF00593 TonB dependent receptor APJL_1597 PF07715 TonB-dependent Receptor Plug Domain APJL_1599 PF02472 Biopolymer transport protein ExbD/TolR APJL_1600 PF01618 MotA/TolQ/ExbB proton channel family APJL_1602 PF03956 Lysine exporter LysO APJL_1604 PF02615 Malate/L-lactate dehydrogenase APJL_1605 PF02615 Malate/L-lactate dehydrogenase APJL_1607 PF17311 Family of unknown function (DUF5358) APJL_1610 PF13439 Glycosyltransferase Family 4 APJL_1610 PF00534 Glycosyl transferases group 1 APJL_1613 PF01467 Cytidylyltransferase-like APJL_1615 PF02563 Polysaccharide biosynthesis/export protein APJL_1617 PF01061 ABC-2 type transporter APJL_1618 PF00005 ABC transporter APJL_1619 PF00005 ABC transporter APJL_1620 PF02911 Formyl transferase, C-terminal domain APJL_1620 PF00551 Formyl transferase APJL_1622 PF01205 Uncharacterized protein family UPF0029 APJL_1622 PF09186 Domain of unknown function (DUF1949) APJL_1623 PF02386 Cation transport protein APJL_1624 PF12724 Flavodoxin domain APJL_1625 PF01741 Large-conductance mechanosensitive channel, MscL APJL_1626 PF04055 Radical SAM superfamily APJL_1627 PF03099 Biotin/lipoate A/B protein ligase family APJL_1628 PF04359 Protein of unknown function (DUF493) APJL_1629 PF00768 D-alanyl-D-alanine carboxypeptidase APJL_1629 PF07943 Penicillin-binding protein 5, C-terminal domain APJL_1630 PF03330 Lytic transglycolase APJL_1631 PF01098 Cell cycle protein APJL_1632 PF03717 Penicillin-binding Protein dimerisation domain APJL_1632 PF00905 Penicillin binding protein transpeptidase domain APJL_1633 PF02590 Predicted SPOUT methyltransferase APJL_1635 PF05188 MutS domain II APJL_1635 PF01624 MutS domain I APJL_1635 PF05192 MutS domain III APJL_1635 PF00488 MutS domain V APJL_1635 PF05190 MutS family domain IV APJL_1636 PF00005 ABC transporter APJL_1637 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1638 PF03313 Serine dehydratase alpha chain APJL_1639 PF01814 Hemerythrin HHE cation binding domain APJL_1639 PF04405 Domain of Unknown function (DUF542) APJL_1640 PF00893 Small Multidrug Resistance protein APJL_1641 PF04175 Protein of unknown function (DUF406) APJL_1644 PF01774 UreD urease accessory protein APJL_1645 PF02492 CobW/HypB/UreG, nucleotide-binding domain APJL_1646 PF01730 UreF APJL_1647 PF02814 UreE urease accessory protein, N-terminal domain APJL_1647 PF05194 UreE urease accessory protein, C-terminal domain APJL_1649 PF01979 Amidohydrolase family APJL_1649 PF00449 Urease alpha-subunit, N-terminal domain APJL_1650 PF00699 Urease beta subunit APJL_1651 PF00547 Urease, gamma subunit APJL_1653 PF00005 ABC transporter APJL_1655 PF01891 Cobalt uptake substrate-specific transmembrane region APJL_1657 PF10670 Domain of unknown function (DUF4198) APJL_1660 PF03600 Citrate transporter APJL_1660 PF02080 TrkA-C domain APJL_1661 PF05068 Mannitol repressor APJL_1662 PF01232 Mannitol dehydrogenase Rossmann domain APJL_1662 PF08125 Mannitol dehydrogenase C-terminal domain APJL_1663 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APJL_1663 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APJL_1663 PF02378 Phosphotransferase system, EIIC APJL_1664 PF01380 SIS domain APJL_1665 PF00455 DeoR C terminal sensor domain APJL_1665 PF08220 DeoR-like helix-turn-helix domain APJL_1668 PF18071 HMW1C N-terminal APJL_1668 PF18254 HMW1 domain 2 APJL_1669 PF00919 Uncharacterized protein family UPF0004 APJL_1669 PF18693 TRAM domain APJL_1669 PF04055 Radical SAM superfamily APJL_1670 PF01048 Phosphorylase superfamily APJL_1672 PF04102 SlyX APJL_1673 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APJL_1673 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APJL_1674 PF13309 HTH domain APJL_1674 PF08348 YheO-like PAS domain APJL_1675 PF02635 DsrE/DsrF-like family APJL_1676 PF02635 DsrE/DsrF-like family APJL_1677 PF04077 DsrH like protein APJL_1678 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APJL_1679 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APJL_1679 PF02874 ATP synthase alpha/beta family, beta-barrel domain APJL_1680 PF00231 ATP synthase APJL_1681 PF02874 ATP synthase alpha/beta family, beta-barrel domain APJL_1681 PF00306 ATP synthase alpha/beta chain, C terminal domain APJL_1681 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APJL_1682 PF00213 ATP synthase delta (OSCP) subunit APJL_1683 PF00430 ATP synthase B/B' CF(0) APJL_1684 PF00137 ATP synthase subunit C APJL_1685 PF00119 ATP synthase A chain APJL_1687 PF02527 rRNA small subunit methyltransferase G APJL_1688 PF13932 GidA associated domain APJL_1688 PF01134 Glucose inhibited division protein A APJL_1690 PF00497 Bacterial extracellular solute-binding proteins, family 3 APJL_1691 PF02810 SEC-C motif APJL_1693 PF03613 PTS system mannose/fructose/sorbose family IID component APJL_1694 PF03609 PTS system sorbose-specific iic component APJL_1695 PF03830 PTS system sorbose subfamily IIB component APJL_1695 PF03610 PTS system fructose IIA component APJL_1696 PF02447 GntP family permease APJL_1697 PF01202 Shikimate kinase APJL_1698 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APJL_1698 PF00356 Bacterial regulatory proteins, lacI family APJL_1699 PF00356 Bacterial regulatory proteins, lacI family APJL_1700 PF05025 RbsD / FucU transport protein family APJL_1701 PF00005 ABC transporter APJL_1702 PF02653 Branched-chain amino acid transport system / permease component APJL_1703 PF13407 Periplasmic binding protein domain APJL_1704 PF00294 pfkB family carbohydrate kinase APJL_1705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APJL_1705 PF00384 Molybdopterin oxidoreductase APJL_1705 PF01568 Molydopterin dinucleotide binding domain APJL_1706 PF12800 4Fe-4S binding domain APJL_1706 PF13247 4Fe-4S dicluster domain APJL_1707 PF04976 DMSO reductase anchor subunit (DmsC) APJL_1708 PF02613 Nitrate reductase delta subunit APJL_1709 PF00037 4Fe-4S binding domain APJL_1709 PF12838 4Fe-4S dicluster domain APJL_1714 PF02769 AIR synthase related protein, C-terminal domain APJL_1714 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APJL_1714 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APJL_1715 PF08220 DeoR-like helix-turn-helix domain APJL_1715 PF00455 DeoR C terminal sensor domain APJL_1716 PF07882 L-fucose isomerase, second N-terminal domain APJL_1716 PF02952 L-fucose isomerase, C-terminal domain APJL_1716 PF07881 L-fucose isomerase, first N-terminal domain APJL_1717 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APJL_1717 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APJL_1718 PF05025 RbsD / FucU transport protein family APJL_1719 PF00596 Class II Aldolase and Adducin N-terminal domain APJL_1720 PF07690 Major Facilitator Superfamily APJL_1721 PF00465 Iron-containing alcohol dehydrogenase APJL_1722 PF07274 Protein of unknown function (DUF1440) APJL_1724 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1725 PF00005 ABC transporter APJL_1726 PF00497 Bacterial extracellular solute-binding proteins, family 3 APJL_1727 PF05159 Capsule polysaccharide biosynthesis protein APJL_1728 PF05159 Capsule polysaccharide biosynthesis protein APJL_1730 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APJL_1731 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APJL_1732 PF03611 PTS system sugar-specific permease component APJL_1734 PF08220 DeoR-like helix-turn-helix domain APJL_1734 PF00455 DeoR C terminal sensor domain APJL_1735 PF01261 Xylose isomerase-like TIM barrel APJL_1736 PF00596 Class II Aldolase and Adducin N-terminal domain APJL_1737 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APJL_1737 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APJL_1742 PF01370 NAD dependent epimerase/dehydratase family APJL_1743 PF01327 Polypeptide deformylase APJL_1744 PF17782 DprA winged helix domain APJL_1744 PF02481 DNA recombination-mediator protein A APJL_1745 PF03169 OPT oligopeptide transporter protein APJL_1747 PF03611 PTS system sugar-specific permease component APJL_1749 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APJL_1750 PF02357 Transcription termination factor nusG APJL_1750 PF00467 KOW motif APJL_1751 PF00298 Ribosomal protein L11, RNA binding domain APJL_1751 PF03946 Ribosomal protein L11, N-terminal domain APJL_1752 PF00687 Ribosomal protein L1p/L10e family APJL_1755 PF00542 Ribosomal protein L7/L12 C-terminal domain APJL_1755 PF16320 Ribosomal protein L7/L12 dimerisation domain APJL_1762 PF04563 RNA polymerase beta subunit APJL_1762 PF00562 RNA polymerase Rpb2, domain 6 APJL_1762 PF04560 RNA polymerase Rpb2, domain 7 APJL_1762 PF10385 RNA polymerase beta subunit external 1 domain APJL_1762 PF04561 RNA polymerase Rpb2, domain 2 APJL_1762 PF04565 RNA polymerase Rpb2, domain 3 APJL_1763 PF04998 RNA polymerase Rpb1, domain 5 APJL_1763 PF05000 RNA polymerase Rpb1, domain 4 APJL_1763 PF04997 RNA polymerase Rpb1, domain 1 APJL_1763 PF04983 RNA polymerase Rpb1, domain 3 APJL_1763 PF00623 RNA polymerase Rpb1, domain 2 APJL_1766 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APJL_1767 PF01850 PIN domain APJL_1771 PF10431 C-terminal, D2-small domain, of ClpB protein APJL_1771 PF00004 ATPase family associated with various cellular activities (AAA) APJL_1771 PF07724 AAA domain (Cdc48 subfamily) APJL_1772 PF00227 Proteasome subunit APJL_1773 PF17746 SfsA N-terminal OB domain APJL_1773 PF03749 Sugar fermentation stimulation protein RE domain APJL_1774 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APJL_1775 PF00730 HhH-GPD superfamily base excision DNA repair protein APJL_1775 PF14815 NUDIX domain APJL_1776 PF04362 Bacterial Fe(2+) trafficking APJL_1777 PF01464 Transglycosylase SLT domain APJL_1777 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APJL_1778 PF02978 Signal peptide binding domain APJL_1778 PF02881 SRP54-type protein, helical bundle domain APJL_1778 PF00448 SRP54-type protein, GTPase domain APJL_1779 PF00149 Calcineurin-like phosphoesterase APJL_1779 PF02872 5'-nucleotidase, C-terminal domain APJL_1780 PF01494 FAD binding domain APJL_1781 PF01381 Helix-turn-helix APJL_1782 PF13335 Magnesium chelatase, subunit ChlI C-terminal APJL_1782 PF01078 Magnesium chelatase, subunit ChlI APJL_1784 PF00561 alpha/beta hydrolase fold APJL_1785 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APJL_1785 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APJL_1785 PF16582 Middle domain of thiamine pyrophosphate APJL_1786 PF13472 GDSL-like Lipase/Acylhydrolase family APJL_1786 PF02348 Cytidylyltransferase APJL_1787 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase APJL_1788 PF00480 ROK family APJL_1789 PF00701 Dihydrodipicolinate synthetase family APJL_1790 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APJL_1791 PF01979 Amidohydrolase family APJL_1792 PF10415 Fumarase C C-terminus APJL_1792 PF00206 Lyase APJL_1794 PF00338 Ribosomal protein S10p/S20e APJL_1795 PF00297 Ribosomal protein L3 APJL_1796 PF00573 Ribosomal protein L4/L1 family APJL_1797 PF00276 Ribosomal protein L23 APJL_1798 PF00181 Ribosomal Proteins L2, RNA binding domain APJL_1798 PF03947 Ribosomal Proteins L2, C-terminal domain APJL_1799 PF00203 Ribosomal protein S19 APJL_1800 PF00237 Ribosomal protein L22p/L17e APJL_1801 PF00189 Ribosomal protein S3, C-terminal domain APJL_1801 PF07650 KH domain APJL_1802 PF00252 Ribosomal protein L16p/L10e APJL_1803 PF00831 Ribosomal L29 protein APJL_1804 PF00366 Ribosomal protein S17 APJL_1805 PF00238 Ribosomal protein L14p/L23e APJL_1806 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APJL_1807 PF00281 Ribosomal protein L5 APJL_1807 PF00673 ribosomal L5P family C-terminus APJL_1808 PF00253 Ribosomal protein S14p/S29e APJL_1809 PF00410 Ribosomal protein S8 APJL_1810 PF00347 Ribosomal protein L6 APJL_1811 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APJL_1812 PF03719 Ribosomal protein S5, C-terminal domain APJL_1812 PF00333 Ribosomal protein S5, N-terminal domain APJL_1813 PF00327 Ribosomal protein L30p/L7e APJL_1814 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APJL_1815 PF00344 SecY translocase APJL_1816 PF00444 Ribosomal protein L36 APJL_1817 PF00416 Ribosomal protein S13/S18 APJL_1818 PF00411 Ribosomal protein S11 APJL_1819 PF00163 Ribosomal protein S4/S9 N-terminal domain APJL_1819 PF01479 S4 domain APJL_1820 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APJL_1820 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APJL_1820 PF01000 RNA polymerase Rpb3/RpoA insert domain APJL_1821 PF01196 Ribosomal protein L17 APJL_1822 PF00886 Ribosomal protein S16 APJL_1823 PF01782 RimM N-terminal domain APJL_1823 PF05239 PRC-barrel domain APJL_1824 PF01746 tRNA (Guanine-1)-methyltransferase APJL_1825 PF01245 Ribosomal protein L19 APJL_1826 PF08007 Cupin superfamily protein APJL_1828 PF01032 FecCD transport family APJL_1829 PF00005 ABC transporter APJL_1830 PF00127 Copper binding proteins, plastocyanin/azurin family APJL_1833 PF02613 Nitrate reductase delta subunit APJL_1834 PF01568 Molydopterin dinucleotide binding domain APJL_1834 PF18364 Molybdopterin oxidoreductase N-terminal domain APJL_1834 PF00384 Molybdopterin oxidoreductase APJL_1836 PF02091 Glycyl-tRNA synthetase alpha subunit APJL_1837 PF04480 Protein of unknown function (DUF559) APJL_1839 PF05746 DALR anticodon binding domain APJL_1839 PF02092 Glycyl-tRNA synthetase beta subunit APJL_1840 PF17347 Family of unknown function (DUF5377) APJL_1841 PF02899 Phage integrase, N-terminal SAM-like domain APJL_1841 PF00589 Phage integrase family APJL_1842 PF04304 Protein of unknown function (DUF454) APJL_1844 PF00149 Calcineurin-like phosphoesterase APJL_1845 PF07509 Protein of unknown function (DUF1523) APJL_1846 PF01026 TatD related DNase APJL_1849 PF02687 FtsX-like permease family APJL_1849 PF00005 ABC transporter APJL_1849 PF12704 MacB-like periplasmic core domain APJL_1850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APJL_1851 PF06629 MltA-interacting protein MipA APJL_1852 PF09115 DNA polymerase III, delta subunit, C terminal APJL_1853 PF02223 Thymidylate kinase APJL_1854 PF02618 YceG-like family APJL_1855 PF00550 Phosphopantetheine attachment site APJL_1856 PF00834 Ribulose-phosphate 3 epimerase family APJL_1857 PF01197 Ribosomal protein L31 APJL_1858 PF00444 Ribosomal protein L36 APJL_1859 PF00912 Transglycosylase APJL_1859 PF00905 Penicillin binding protein transpeptidase domain APJL_1859 PF14814 Bifunctional transglycosylase second domain APJL_1860 PF00378 Enoyl-CoA hydratase/isomerase APJL_1861 PF04607 Region found in RelA / SpoT proteins APJL_1861 PF02824 TGS domain APJL_1861 PF13291 ACT domain APJL_1862 PF01192 RNA polymerase Rpb6 APJL_1863 PF00270 DEAD/DEAH box helicase APJL_1863 PF17191 RecG wedge domain APJL_1863 PF00271 Helicase conserved C-terminal domain APJL_1867 PF03129 Anticodon binding domain APJL_1867 PF04073 Aminoacyl-tRNA editing domain APJL_1867 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APJL_1869 PF08281 Sigma-70, region 4 APJL_1869 PF04542 Sigma-70 region 2 APJL_1870 PF00174 Oxidoreductase molybdopterin binding domain APJL_1871 PF01794 Ferric reductase like transmembrane component APJL_1872 PF00140 Sigma-70 factor, region 1.2 APJL_1872 PF04542 Sigma-70 region 2 APJL_1872 PF04545 Sigma-70, region 4 APJL_1873 PF07690 Major Facilitator Superfamily APJL_1876 PF03590 Aspartate-ammonia ligase APJL_1877 PF01037 Lrp/AsnC ligand binding domain APJL_1877 PF13404 AsnC-type helix-turn-helix domain APJL_1878 PF01048 Phosphorylase superfamily APJL_1879 PF04345 Chorismate lyase APJL_1880 PF01177 Asp/Glu/Hydantoin racemase APJL_1881 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APJL_1881 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APJL_1882 PF00175 Oxidoreductase NAD-binding domain APJL_1882 PF00258 Flavodoxin APJL_1882 PF00667 FAD binding domain APJL_1883 PF00009 Elongation factor Tu GTP binding domain APJL_1884 PF01507 Phosphoadenosine phosphosulfate reductase family APJL_1885 PF01507 Phosphoadenosine phosphosulfate reductase family APJL_1886 PF10414 Sirohaem synthase dimerisation region APJL_1886 PF14824 Sirohaem biosynthesis protein central APJL_1886 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APJL_1888 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1889 PF00528 Binding-protein-dependent transport system inner membrane component APJL_1890 PF00005 ABC transporter APJL_1890 PF17850 CysA C-terminal regulatory domain APJL_1890 PF12857 TOBE-like domain APJL_1891 PF01070 FMN-dependent dehydrogenase APJL_1892 PF02237 Biotin protein ligase C terminal domain APJL_1892 PF08279 HTH domain APJL_1892 PF03099 Biotin/lipoate A/B protein ligase family APJL_1893 PF01565 FAD binding domain APJL_1893 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APJL_1894 PF00691 OmpA family APJL_1894 PF01389 OmpA-like transmembrane domain APJL_1896 PF13333 Integrase core domain APJL_1896 PF00665 Integrase core domain APJL_1897 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APJL_1897 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APJL_1898 PF04403 Paraquat-inducible protein A APJL_1899 PF01841 Transglutaminase-like superfamily APJL_1901 PF00403 Heavy-metal-associated domain APJL_1902 PF00465 Iron-containing alcohol dehydrogenase APJL_1903 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APJL_1903 PF03466 LysR substrate binding domain APJL_1904 PF14602 Hexapeptide repeat of succinyl-transferase APJL_1904 PF00132 Bacterial transferase hexapeptide (six repeats) APJL_1904 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APJL_1905 PF01220 Dehydroquinase class II APJL_1906 PF04488 Glycosyltransferase sugar-binding region containing DXD motif APJL_1907 PF00364 Biotin-requiring enzyme APJL_1908 PF02785 Biotin carboxylase C-terminal domain APJL_1908 PF00289 Biotin carboxylase, N-terminal domain APJL_1908 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APJL_1909 PF12804 MobA-like NTP transferase domain APJL_1910 PF06288 Protein of unknown function (DUF1040) APJL_1911 PF01323 DSBA-like thioredoxin domain APJL_1914 PF05036 Sporulation related domain APJL_1914 PF05036 Sporulation related domain APJL_1915 PF04445 Putative SAM-dependent methyltransferase APJL_1916 PF02557 D-alanyl-D-alanine carboxypeptidase APJL_1917 PF01546 Peptidase family M20/M25/M40 APJL_1917 PF07687 Peptidase dimerisation domain APJL_1918 PF03960 ArsC family APJL_1920 PF00809 Pterin binding enzyme APJL_1921 PF01479 S4 domain APJL_1921 PF00849 RNA pseudouridylate synthase APJL_1923 PF05552 Conserved TM helix APJL_1923 PF00924 Mechanosensitive ion channel APJL_1924 PF02785 Biotin carboxylase C-terminal domain APJL_1924 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APJL_1924 PF00289 Biotin carboxylase, N-terminal domain APJL_1926 PF05193 Peptidase M16 inactive domain APJL_1926 PF00675 Insulinase (Peptidase family M16) APJL_1926 PF16187 Middle or third domain of peptidase_M16 APJL_1927 PF17946 RecC C-terminal domain APJL_1932 PF07977 FabA-like domain APJL_1933 PF13654 AAA domain APJL_1933 PF05362 Lon protease (S16) C-terminal proteolytic domain APJL_1934 PF06303 MatP N-terminal domain APJL_1934 PF17414 MatP C-terminal ribbon-helix-helix domain APJL_1935 PF00579 tRNA synthetases class I (W and Y) APJL_1936 PF13419 Haloacid dehalogenase-like hydrolase APJL_1938 PF01790 Prolipoprotein diacylglyceryl transferase APJL_1939 PF01925 Sulfite exporter TauE/SafE APJL_1940 PF00293 NUDIX domain APJL_1943 PF00719 Inorganic pyrophosphatase APJL_1946 PF03737 Aldolase/RraA APJL_1947 PF01226 Formate/nitrite transporter APJL_1949 PF13333 Integrase core domain APJL_1949 PF00665 Integrase core domain APJL_1952 PF01556 DnaJ C terminal domain APJL_1952 PF00684 DnaJ central domain APJL_1952 PF00226 DnaJ domain APJL_1953 PF00012 Hsp70 protein APJL_1954 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APJL_1954 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APJL_1956 PF13407 Periplasmic binding protein domain APJL_1957 PF00005 ABC transporter APJL_1958 PF02653 Branched-chain amino acid transport system / permease component APJL_1959 PF12833 Helix-turn-helix domain APJL_1960 PF01431 Peptidase family M13 APJL_1960 PF05649 Peptidase family M13 APJL_1961 PF10571 Uncharacterised protein family UPF0547 APJL_1962 PF00474 Sodium:solute symporter family APJL_1963 PF06196 Protein of unknown function (DUF997) APJL_1964 PF01340 Met Apo-repressor, MetJ APJL_1965 PF04333 MlaA lipoprotein APJL_1966 PF01263 Aldose 1-epimerase APJL_1969 PF14883 Hypothetical glycosyl hydrolase family 13 APJL_1969 PF01522 Polysaccharide deacetylase APJL_1970 PF00535 Glycosyl transferase family 2 APJL_1972 PF00121 Triosephosphate isomerase APJL_1973 PF01142 tRNA pseudouridine synthase D (TruD) APJL_1974 PF01975 Survival protein SurE APJL_1975 PF09335 SNARE associated Golgi protein APJL_1978 PF01551 Peptidase family M23 APJL_1978 PF01476 LysM domain APJL_1979 PF03352 Methyladenine glycosylase APJL_1981 PF07670 Nucleoside recognition APJL_1982 PF07670 Nucleoside recognition APJL_1983 PF00762 Ferrochelatase APJL_1984 PF00468 Ribosomal protein L34 APJL_1985 PF00825 Ribonuclease P APJL_1987 PF00120 Glutamine synthetase, catalytic domain APJL_1987 PF03951 Glutamine synthetase, beta-Grasp domain APJL_1988 PF00149 Calcineurin-like phosphoesterase APJL_1989 PF00293 NUDIX domain APJL_1990 PF06146 Phosphate-starvation-inducible E APJL_1991 PF01648 4'-phosphopantetheinyl transferase superfamily APJL_1992 PF00892 EamA-like transporter family APJL_1994 PF06965 Na+/H+ antiporter 1 APJL_1996 PF02580 D-Tyr-tRNA(Tyr) deacylase APJL_1997 PF03631 Virulence factor BrkB APJL_1998 PF00171 Aldehyde dehydrogenase family APJL_2005 PF01119 DNA mismatch repair protein, C-terminal domain APJL_2005 PF08676 MutL C terminal dimerisation domain APJL_2006 PF00107 Zinc-binding dehydrogenase APJL_2006 PF08240 Alcohol dehydrogenase GroES-like domain APJL_2008 PF17209 Hfq protein APJL_2009 PF16360 GTP-binding GTPase Middle Region APJL_2009 PF13167 GTP-binding GTPase N-terminal APJL_2009 PF01926 50S ribosome-binding GTPase APJL_2010 PF03641 Possible lysine decarboxylase APJL_2011 PF03819 MazG nucleotide pyrophosphohydrolase domain APJL_2012 PF00027 Cyclic nucleotide-binding domain APJL_2012 PF13545 Crp-like helix-turn-helix domain APJL_2013 PF06794 Uncharacterised protein family (UPF0270) APJL_2014 PF00440 Bacterial regulatory proteins, tetR family APJL_2015 PF00692 dUTPase APJL_2016 PF02441 Flavoprotein APJL_2016 PF04127 DNA / pantothenate metabolism flavoprotein APJL_2017 PF04002 RadC-like JAB domain APJL_2018 PF00830 Ribosomal L28 family APJL_2019 PF00471 Ribosomal protein L33 APJL_2023 PF00202 Aminotransferase class-III APJL_2024 PF00282 Pyridoxal-dependent decarboxylase conserved domain APJL_2025 PF01206 Sulfurtransferase TusA APJL_2026 PF04143 Sulphur transport APJL_2027 PF04219 Protein of unknown function, DUF APJL_2028 PF05958 tRNA (Uracil-5-)-methyltransferase APJL_2029 PF01544 CorA-like Mg2+ transporter protein APJL_2030 PF01209 ubiE/COQ5 methyltransferase family APJL_2032 PF03109 ABC1 family APJL_2033 PF02416 mttA/Hcf106 family APJL_2035 PF00902 Sec-independent protein translocase protein (TatC) APJL_2036 PF00490 Delta-aminolevulinic acid dehydratase APJL_2038 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APJL_2038 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APJL_2038 PF06827 Zinc finger found in FPG and IleRS APJL_2039 PF05525 Branched-chain amino acid transport protein APJL_2041 PF00698 Acyl transferase domain APJL_2042 PF02677 Epoxyqueuosine reductase QueH APJL_2043 PF00348 Polyprenyl synthetase APJL_2045 PF03358 NADPH-dependent FMN reductase APJL_2046 PF07681 DoxX APJL_2047 PF00829 Ribosomal prokaryotic L21 protein APJL_2048 PF01016 Ribosomal L27 protein APJL_2049 PF00892 EamA-like transporter family APJL_2052 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APJL_2054 PF00156 Phosphoribosyl transferase domain APJL_2055 PF08468 Methyltransferase small domain N-terminal APJL_2055 PF05175 Methyltransferase small domain APJL_2057 PF00583 Acetyltransferase (GNAT) family APJL_2058 PF00271 Helicase conserved C-terminal domain APJL_2058 PF00270 DEAD/DEAH box helicase APJL_2059 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APJL_2059 PF01243 Pyridoxamine 5'-phosphate oxidase APJL_2060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APJL_2061 PF00171 Aldehyde dehydrogenase family APJL_2062 PF01184 GPR1/FUN34/yaaH family APJL_2063 PF00005 ABC transporter APJL_2064 PF01497 Periplasmic binding protein APJL_2065 PF01032 FecCD transport family APJL_2066 PF00593 TonB dependent receptor APJL_2066 PF07715 TonB-dependent Receptor Plug Domain APJL_2068 PF01259 SAICAR synthetase APJL_2069 PF08029 HisG, C-terminal domain APJL_2069 PF01634 ATP phosphoribosyltransferase APJL_2070 PF00815 Histidinol dehydrogenase APJL_2071 PF00155 Aminotransferase class I and II APJL_2073 PF00475 Imidazoleglycerol-phosphate dehydratase APJL_2075 PF00117 Glutamine amidotransferase class-I APJL_2076 PF00977 Histidine biosynthesis protein APJL_2077 PF00977 Histidine biosynthesis protein APJL_2078 PF01502 Phosphoribosyl-AMP cyclohydrolase APJL_2078 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APJL_2079 PF02592 Putative vitamin uptake transporter APJL_2080 PF00557 Metallopeptidase family M24 APJL_2083 PF13407 Periplasmic binding protein domain APJL_2083 PF00356 Bacterial regulatory proteins, lacI family APJL_2084 PF08244 Glycosyl hydrolases family 32 C terminal APJL_2084 PF00251 Glycosyl hydrolases family 32 N-terminal domain APJL_2085 PF00294 pfkB family carbohydrate kinase APJL_2086 PF07732 Multicopper oxidase APJL_2087 PF12704 MacB-like periplasmic core domain APJL_2087 PF02687 FtsX-like permease family APJL_2088 PF00005 ABC transporter APJL_2089 PF02687 FtsX-like permease family APJL_2089 PF12704 MacB-like periplasmic core domain APJL_2090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APJL_2090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APJL_2091 PF00793 DAHP synthetase I family APJL_2092 PF13369 Transglutaminase-like superfamily APJL_2093 PF13847 Methyltransferase domain APJL_2093 PF17827 PrmC N-terminal domain APJL_2095 PF03462 PCRF domain APJL_2095 PF00472 RF-1 domain APJL_2096 PF00581 Rhodanese-like domain APJL_2097 PF04143 Sulphur transport