locus-tag	class	description
APJL_0001	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
APJL_0002	COG0592	DNA-directed DNA polymerase activity
APJL_0005	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
APJL_0009	COG0616	signal peptide processing
APJL_0012	COG3116	cell division
APJL_0013	COG0768	penicillin binding
APJL_0014	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
APJL_0015	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
APJL_0017	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
APJL_0018	COG0772	Belongs to the SEDS family
APJL_0020	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
APJL_0021	COG1181	Belongs to the D-alanine--D-alanine ligase family
APJL_0023	COG0849	cell division
APJL_0024	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
APJL_0026	COG0497	DNA recombination
APJL_0027	COG4172	Belongs to the ABC transporter superfamily
APJL_0028	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
APJL_0029	COG0601	transmembrane transport
APJL_0035	COG0012	GTP binding
APJL_0036	COG2020	methyltransferase activity
APJL_0038	COG3133	Outer membrane lipoprotein
APJL_0039	COG3102	Protein conserved in bacteria
APJL_0040	COG0018	arginyl-trna synthetase
APJL_0043	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
APJL_0044	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
APJL_0045	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
APJL_0046	COG0196	riboflavin kinase activity
APJL_0047	COG3172	ATPase kinase involved in NAD metabolism
APJL_0048	COG2129	metallophosphoesterase
APJL_0049	COG0745	RESPONSE REGULATOR receiver
APJL_0051	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
APJL_0052	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
APJL_0054	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
APJL_0055	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
APJL_0056	COG1561	YicC-like family, N-terminal region
APJL_0057	COG0354	folic acid binding
APJL_0058	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
APJL_0059	COG2197	response regulator
APJL_0061	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
APJL_0063	COG0747	negative chemotaxis
APJL_0064	COG0747	negative chemotaxis
APJL_0065	COG0601	transmembrane transport
APJL_0066	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
APJL_0067	COG0444	Belongs to the ABC transporter superfamily
APJL_0068	COG4608	Belongs to the ABC transporter superfamily
APJL_0071	COG0251	oxidation-reduction process
APJL_0072	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
APJL_0073	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
APJL_0074	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
APJL_0075	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
APJL_0076	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
APJL_0077	COG0848	biopolymer transport protein
APJL_0078	COG0811	peptide transport
APJL_0080	COG3118	belongs to the thioredoxin family
APJL_0081	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
APJL_0081	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
APJL_0081	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
APJL_0082	COG1461	Dihydroxyacetone kinase
APJL_0083	COG2376	Dihydroxyacetone kinase
APJL_0084	COG0492	ferredoxin-NADP+ reductase activity
APJL_0086	COG3753	Protein conserved in bacteria
APJL_0090	COG3030	protein affecting phage T7 exclusion by the F plasmid
APJL_0091	COG0006	proline dipeptidase activity
APJL_0093	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
APJL_0098	COG3978	acetolactate synthase activity
APJL_0101	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
APJL_0102	COG0437	4 iron, 4 sulfur cluster binding
APJL_0103	COG3301	Polysulphide reductase, NrfD
APJL_0108	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
APJL_0109	COG1414	Transcriptional regulator
APJL_0110	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
APJL_0114	COG3068	Protein conserved in bacteria
APJL_0119	COG1278	Cold shock
APJL_0120	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
APJL_0121	COG0793	Belongs to the peptidase S41A family
APJL_0122	COG2989	Protein conserved in bacteria
APJL_0123	COG3108	Peptidase M15
APJL_0124	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
APJL_0127	COG0537	adenosine 5'-monophosphoramidase activity
APJL_0128	COG1108	ABC-type Mn2 Zn2 transport systems permease components
APJL_0129	COG1108	ABC-type Mn2 Zn2 transport systems permease components
APJL_0131	COG1162	GTPase activity
APJL_0132	COG0583	DNA-binding transcription factor activity
APJL_0133	COG1011	Hydrolase
APJL_0134	COG0583	DNA-binding transcription factor activity
APJL_0136	COG0252	asparaginase activity
APJL_0138	COG5413	integral membrane protein
APJL_0141	COG3835	regulator
APJL_0142	COG2610	gluconate transmembrane transporter activity
APJL_0143	COG1929	Belongs to the glycerate kinase type-1 family
APJL_0144	COG1254	Belongs to the acylphosphatase family
APJL_0145	COG3593	DNA synthesis involved in DNA repair
APJL_0146	COG1611	Belongs to the LOG family
APJL_0147	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
APJL_0149	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
APJL_0150	COG0316	Belongs to the HesB IscA family
APJL_0150	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
APJL_0152	COG1805	sodium ion transport
APJL_0153	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
APJL_0154	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
APJL_0155	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
APJL_0156	COG2871	sodium ion transport
APJL_0157	COG1477	protein flavinylation
APJL_0158	COG2991	Protein conserved in bacteria
APJL_0160	COG2814	Major facilitator Superfamily
APJL_0161	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
APJL_0163	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
APJL_0166	COG4657	Part of a membrane complex involved in electron transport
APJL_0167	COG2878	Part of a membrane complex involved in electron transport
APJL_0168	COG4656	Part of a membrane complex involved in electron transport
APJL_0173	COG1560	Kdo2-lipid A biosynthetic process
APJL_0174	COG0402	S-adenosylhomocysteine deaminase activity
APJL_0175	COG4143	(ABC) transporter
APJL_0176	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
APJL_0177	COG0617	tRNA 3'-terminal CCA addition
APJL_0178	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
APJL_0180	COG2911	Protein conserved in bacteria
APJL_0182	COG0346	lactoylglutathione lyase activity
APJL_0183	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
APJL_0185	COG1605	Chorismate mutase
APJL_0185	COG0287	Prephenate dehydrogenase
APJL_0186	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
APJL_0187	COG0859	PFAM glycosyl transferase family 9
APJL_0188	COG0469	pyruvate kinase activity
APJL_0189	COG2062	phosphohistidine phosphatase, SixA
APJL_0190	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
APJL_0191	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
APJL_0192	COG0733	neurotransmitter:sodium symporter activity
APJL_0193	COG0338	D12 class N6 adenine-specific DNA methyltransferase
APJL_0194	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
APJL_0195	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
APJL_0196	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
APJL_0197	COG4972	Pilus assembly protein
APJL_0201	COG4796	Type ii and iii secretion system protein
APJL_0202	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
APJL_0203	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
APJL_0204	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
APJL_0205	COG1280	lysine exporter protein (LysE YggA)
APJL_0206	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
APJL_0208	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
APJL_0209	COG2801	Transposase and inactivated derivatives
APJL_0210	COG2963	transposase activity
APJL_0211	COG2963	transposase activity
APJL_0213	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
APJL_0224	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
APJL_0225	COG0291	Belongs to the bacterial ribosomal protein bL35 family
APJL_0226	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
APJL_0229	COG2963	transposase activity
APJL_0230	COG2801	Transposase and inactivated derivatives
APJL_0231	COG2801	Transposase and inactivated derivatives
APJL_0232	COG2801	Transposase and inactivated derivatives
APJL_0233	COG1253	flavin adenine dinucleotide binding
APJL_0234	COG0564	pseudouridine synthase activity
APJL_0235	COG0406	alpha-ribazole phosphatase activity
APJL_0236	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
APJL_0237	COG1678	Uncharacterized ACR, COG1678
APJL_0238	COG1385	rRNA (uridine-N3-)-methyltransferase activity
APJL_0240	COG0271	Belongs to the BolA IbaG family
APJL_0244	COG0653	protein targeting
APJL_0246	COG0494	nUDIX hydrolase
APJL_0247	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
APJL_0249	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
APJL_0253	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
APJL_0254	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
APJL_0255	COG0083	homoserine kinase activity
APJL_0259	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
APJL_0260	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
APJL_0261	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
APJL_0262	COG2195	Cleaves the N-terminal amino acid of tripeptides
APJL_0263	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
APJL_0264	COG0194	GDP metabolic process
APJL_0265	COG1538	Outer membrane efflux protein
APJL_0266	COG2914	Belongs to the UPF0125 (RnfH) family
APJL_0267	COG2867	negative regulation of translational initiation
APJL_0268	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
APJL_0269	COG4149	molybdate abc transporter
APJL_0270	COG0725	ABC transporter, periplasmic molybdate-binding protein
APJL_0271	COG0842	Transport permease protein
APJL_0272	COG1131	(ABC) transporter
APJL_0273	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
APJL_0274	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
APJL_0278	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
APJL_0279	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
APJL_0280	COG1121	(ABC) transporter
APJL_0283	COG2920	part of a sulfur-relay system
APJL_0284	COG0670	Belongs to the BI1 family
APJL_0285	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
APJL_0288	COG0084	hydrolase, TatD family'
APJL_0289	COG0210	DNA helicase
APJL_0290	COG3842	ATPase activity
APJL_0291	COG1176	ABC-type spermidine putrescine transport system, permease component I
APJL_0292	COG1177	transmembrane transport
APJL_0295	COG2255	four-way junction helicase activity
APJL_0296	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
APJL_0297	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
APJL_0306	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
APJL_0308	COG1271	oxidase subunit
APJL_0309	COG1294	oxidase, subunit
APJL_0312	COG0824	Thioesterase
APJL_0313	COG0811	peptide transport
APJL_0314	COG0848	biopolymer transport protein
APJL_0315	COG3064	Membrane
APJL_0315	COG3064	Membrane
APJL_0316	COG0823	Involved in the tonB-independent uptake of proteins
APJL_0319	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
APJL_0320	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
APJL_0326	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
APJL_0327	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
APJL_0328	COG0232	Belongs to the dGTPase family. Type 2 subfamily
APJL_0330	COG0564	pseudouridine synthase activity
APJL_0331	COG3023	N-Acetylmuramoyl-L-alanine amidase
APJL_0332	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
APJL_0333	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
APJL_0334	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
APJL_0335	COG0626	cystathionine gamma-synthase activity
APJL_0336	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
APJL_0339	COG1702	phosphate starvation-inducible protein PhoH
APJL_0341	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
APJL_0342	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
APJL_0343	COG0709	Synthesizes selenophosphate from selenide and ATP
APJL_0345	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
APJL_0349	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
APJL_0350	COG1660	Displays ATPase and GTPase activities
APJL_0351	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
APJL_0352	COG1137	ATPase activity
APJL_0353	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
APJL_0355	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
APJL_0356	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
APJL_0358	COG1704	LemA family
APJL_0359	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
APJL_0359	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
APJL_0359	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
APJL_0360	COG1105	Belongs to the carbohydrate kinase PfkB family
APJL_0361	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
APJL_0361	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
APJL_0363	COG1523	belongs to the glycosyl hydrolase 13 family
APJL_0364	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
APJL_0365	COG0297	glycogen (starch) synthase activity
APJL_0366	COG0058	SHG alpha-glucan phosphorylase activity
APJL_0371	COG1187	pseudouridine synthase activity
APJL_0372	COG2814	Major facilitator Superfamily
APJL_0374	COG3381	protein complex oligomerization
APJL_0376	COG0791	NLP P60 protein
APJL_0377	COG2932	Transcriptional regulator
APJL_0379	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
APJL_0380	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
APJL_0381	COG2990	Protein conserved in bacteria
APJL_0383	COG1643	Atp-dependent helicase
APJL_0384	COG2707	UPF0756 membrane protein
APJL_0386	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
APJL_0387	COG0534	Mate efflux family protein
APJL_0388	COG1074	ATP-dependent DNA helicase activity
APJL_0389	COG0815	Transfers the fatty acyl group on membrane lipoproteins
APJL_0390	COG4535	Mg2 and Co2 transporter CorC
APJL_0392	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
APJL_0393	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
APJL_0394	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
APJL_0395	COG2271	Major facilitator Superfamily
APJL_0398	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
APJL_0399	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
APJL_0400	COG0247	lactate metabolic process
APJL_0408	COG0517	IMP dehydrogenase activity
APJL_0408	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
APJL_0410	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
APJL_0411	COG0385	Bile acid
APJL_0412	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
APJL_0413	COG0561	phosphatase activity
APJL_0415	COG1595	DNA-templated transcription, initiation
APJL_0416	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
APJL_0418	COG0318	PFAM AMP-dependent synthetase and ligase
APJL_0419	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
APJL_0421	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
APJL_0422	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
APJL_0423	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
APJL_0423	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
APJL_0432	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
APJL_0433	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
APJL_0436	COG0750	zinc metalloprotease
APJL_0437	COG0575	Belongs to the CDS family
APJL_0438	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
APJL_0441	COG0671	phosphoesterase, PA-phosphatase related
APJL_0442	COG1534	Rna-binding protein
APJL_0443	COG0463	Glycosyl transferase, family 2
APJL_0446	COG0859	PFAM glycosyl transferase family 9
APJL_0448	COG0328	RNA-DNA hybrid ribonuclease activity
APJL_0449	COG1286	toxin biosynthetic process
APJL_0450	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
APJL_0452	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
APJL_0453	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
APJL_0455	COG0251	oxidation-reduction process
APJL_0457	COG5645	(Lipo)protein
APJL_0460	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
APJL_0462	COG1792	Involved in formation and maintenance of cell shape
APJL_0463	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
APJL_0464	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
APJL_0465	COG1108	ABC-type Mn2 Zn2 transport systems permease components
APJL_0466	COG0121	glutamine amidotransferase
APJL_0467	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
APJL_0468	COG2949	membrane
APJL_0471	COG1556	Lactate utilization protein
APJL_0472	COG1139	Iron-sulfur cluster binding protein
APJL_0473	COG0247	lactate metabolic process
APJL_0474	COG1620	l-lactate permease
APJL_0475	COG2916	Histone family protein nucleoid-structuring protein H-NS
APJL_0476	COG1757	Na H antiporter
APJL_0477	COG1879	ABC-type sugar transport system periplasmic component
APJL_0478	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
APJL_0480	COG2990	Protein conserved in bacteria
APJL_0481	COG0508	dehydrogenase complex catalyzes the overall conversion of
APJL_0482	COG0567	Dehydrogenase, E1 component
APJL_0483	COG1121	(ABC) transporter
APJL_0484	COG0739	heme binding
APJL_0485	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
APJL_0486	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
APJL_0488	COG0561	phosphatase activity
APJL_0489	COG3850	Histidine kinase
APJL_0491	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
APJL_0493	COG2759	Belongs to the formate--tetrahydrofolate ligase family
APJL_0494	COG2983	Belongs to the UPF0260 family
APJL_0495	COG4221	oxidoreductase activity
APJL_0500	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
APJL_0500	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
APJL_0505	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
APJL_0506	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
APJL_0511	COG0640	Transcriptional regulator
APJL_0513	COG0189	ligase activity
APJL_0514	COG1434	Gram-negative-bacterium-type cell wall biogenesis
APJL_0518	COG3683	transport system, periplasmic component
APJL_0519	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
APJL_0520	COG1115	amino acid carrier protein
APJL_0522	COG1116	anion transmembrane transporter activity
APJL_0523	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
APJL_0524	COG2104	thiamine diphosphate biosynthetic process
APJL_0526	COG2022	thiamine diphosphate biosynthetic process
APJL_0527	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
APJL_0528	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
APJL_0529	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
APJL_0534	COG0481	GTPase activity
APJL_0535	COG0681	Belongs to the peptidase S26 family
APJL_0551	COG0433	COG0433 Predicted ATPase
APJL_0552	COG1840	ABC-type Fe3 transport system, periplasmic component
APJL_0561	COG2194	sulfuric ester hydrolase activity
APJL_0562	COG0528	UMP kinase activity
APJL_0563	COG0233	cytoplasmic translational termination
APJL_0564	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
APJL_0567	COG0590	tRNA wobble adenosine to inosine editing
APJL_0568	COG0513	Belongs to the DEAD box helicase family
APJL_0569	COG4785	May be involved in cell division
APJL_0571	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
APJL_0573	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
APJL_0576	COG3083	sulfuric ester hydrolase activity
APJL_0578	COG1309	transcriptional regulator
APJL_0579	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
APJL_0580	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
APJL_0583	COG3955	Domain of unknown function (DUF1919)
APJL_0584	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
APJL_0587	COG0516	GMP reductase activity
APJL_0587	COG0517	IMP dehydrogenase activity
APJL_0588	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
APJL_0589	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
APJL_0590	COG0814	amino acid
APJL_0591	COG0814	amino acid
APJL_0593	COG3105	Protein conserved in bacteria
APJL_0594	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
APJL_0599	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
APJL_0600	COG1823	symporter activity
APJL_0601	COG0778	Nitroreductase
APJL_0603	COG0072	phenylalanine-tRNA ligase activity
APJL_0604	COG0776	regulation of translation
APJL_0605	COG0791	NLP P60 protein
APJL_0606	COG2801	Transposase and inactivated derivatives
APJL_0607	COG2801	Transposase and inactivated derivatives
APJL_0608	COG2963	transposase activity
APJL_0609	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
APJL_0610	COG1940	carbohydrate kinase activity
APJL_0610	COG1846	Transcriptional regulator
APJL_0611	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
APJL_0612	COG1522	sequence-specific DNA binding
APJL_0613	COG1674	ftsk spoiiie
APJL_0614	COG2321	neutral zinc metallopeptidase
APJL_0615	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
APJL_0616	COG1214	PFAM Peptidase M22, glycoprotease
APJL_0617	COG1435	thymidine kinase activity
APJL_0618	COG3074	FtsZ-dependent cytokinesis
APJL_0619	COG1494	fructose-1,6-bisphosphatase
APJL_0620	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
APJL_0621	COG1136	(ABC) transporter
APJL_0621	COG0577	efflux transmembrane transporter activity
APJL_0622	COG2205	protein histidine kinase activity
APJL_0623	COG0745	RESPONSE REGULATOR receiver
APJL_0624	COG3956	TIGRFAM MazG family protein
APJL_0627	COG0285	dihydrofolate synthase activity
APJL_0628	COG0779	Required for maturation of 30S ribosomal subunits
APJL_0629	COG0195	Participates in both transcription termination and antitermination
APJL_0631	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
APJL_0632	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
APJL_0633	COG2951	lytic endotransglycosylase activity
APJL_0635	COG0857	belongs to the CobB CobQ family
APJL_0635	COG0280	phosphate acetyltransferase
APJL_0637	COG0737	Belongs to the 5'-nucleotidase family
APJL_0641	COG1210	Utp--glucose-1-phosphate uridylyltransferase
APJL_0643	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
APJL_0645	COG0589	response to stress
APJL_0647	COG2969	positive regulation of protein catabolic process
APJL_0648	COG0625	glutathione transferase activity
APJL_0649	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
APJL_0651	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
APJL_0652	COG1448	Aminotransferase
APJL_0653	COG0006	proline dipeptidase activity
APJL_0662	COG0556	nucleotide-excision repair
APJL_0663	COG2822	iron ion transport
APJL_0664	COG2837	iron assimilation
APJL_0666	COG0613	PHP domain protein
APJL_0668	COG2925	Exonuclease
APJL_0669	COG0038	chloride channel
APJL_0671	COG1509	lysine 2,3-aminomutase activity
APJL_0673	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
APJL_0674	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
APJL_0676	COG2814	Major facilitator Superfamily
APJL_0677	COG0741	lytic transglycosylase activity
APJL_0678	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
APJL_0679	COG0626	cystathionine gamma-synthase activity
APJL_0684	COG2363	Small membrane protein
APJL_0685	COG0277	FAD linked oxidase domain protein
APJL_0686	COG0243	molybdopterin cofactor binding
APJL_0687	COG3005	denitrification pathway
APJL_0689	COG0315	cyclic pyranopterin monophosphate synthase activity
APJL_0690	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
APJL_0691	COG0314	molybdopterin synthase activity
APJL_0692	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
APJL_0693	COG1444	tRNA N-acetyltransferase activity
APJL_0695	COG0583	DNA-binding transcription factor activity
APJL_0700	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
APJL_0705	COG1737	Transcriptional regulator
APJL_0706	COG2731	YhcH YjgK YiaL family protein
APJL_0707	COG0248	Ppx GppA phosphatase
APJL_0713	COG0305	Participates in initiation and elongation during chromosome replication
APJL_0714	COG4607	ABC-type enterochelin transport system periplasmic component
APJL_0715	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
APJL_0716	COG4605	iron ion homeostasis
APJL_0717	COG4604	ABC transporter, ATP-binding protein
APJL_0718	COG1392	Phosphate transport regulator
APJL_0719	COG0306	phosphate transporter
APJL_0720	COG4991	sh3 domain protein
APJL_0722	COG3945	hemerythrin HHE cation binding domain
APJL_0726	COG1278	Cold shock
APJL_0729	COG0028	Belongs to the TPP enzyme family
APJL_0730	COG0440	acetolactate synthase activity
APJL_0731	COG0312	modulator of DNA gyrase
APJL_0732	COG3028	Belongs to the UPF0307 family
APJL_0733	COG3094	Invasion gene expression up-regulator, SirB
APJL_0735	COG1811	Na channel or pump
APJL_0736	COG3787	Belongs to the UPF0306 family
APJL_0737	COG0023	Translation Initiation Factor
APJL_0738	COG0284	orotidine-5'-phosphate decarboxylase activity
APJL_0739	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
APJL_0740	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
APJL_0741	COG0776	regulation of translation
APJL_0742	COG0539	negative regulation of cytoplasmic translation
APJL_0744	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
APJL_0745	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
APJL_0747	COG1785	Belongs to the alkaline phosphatase family
APJL_0748	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
APJL_0750	COG3264	Mechanosensitive ion channel
APJL_0750	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
APJL_0751	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
APJL_0751	COG3264	Mechanosensitive ion channel
APJL_0752	COG0318	PFAM AMP-dependent synthetase and ligase
APJL_0753	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
APJL_0754	COG0596	Alpha beta hydrolase
APJL_0756	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
APJL_0760	COG1380	Effector of murein hydrolase LrgA
APJL_0761	COG1346	cytolysis
APJL_0763	COG3036	rescue of stalled ribosome
APJL_0764	COG2226	methyltransferase
APJL_0768	COG0658	competence protein
APJL_0768	COG2333	competence protein COMEC
APJL_0769	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
APJL_0770	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
APJL_0771	COG0737	Belongs to the 5'-nucleotidase family
APJL_0774	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
APJL_0775	COG0508	dehydrogenase complex catalyzes the overall conversion of
APJL_0776	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
APJL_0778	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
APJL_0781	COG1132	(ABC) transporter
APJL_0782	COG1346	cytolysis
APJL_0784	COG1199	ATP-dependent helicase activity
APJL_0786	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
APJL_0787	COG0629	single-stranded DNA binding
APJL_0794	COG2070	2-Nitropropane dioxygenase
APJL_0798	COG2315	Protein conserved in bacteria
APJL_0799	COG4172	Belongs to the ABC transporter superfamily
APJL_0800	COG4171	peptide transport system, permease
APJL_0801	COG4168	peptide transport system, permease
APJL_0802	COG4166	transmembrane transport
APJL_0803	COG3283	Transcriptional regulator of aromatic amino acids metabolism
APJL_0804	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
APJL_0805	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
APJL_0806	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
APJL_0808	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
APJL_0810	COG1368	sulfuric ester hydrolase activity
APJL_0811	COG3217	Mosc domain protein beta barrel domain protein
APJL_0811	COG0633	Ferredoxin
APJL_0812	COG1722	exodeoxyribonuclease VII activity
APJL_0813	COG0142	geranyltranstransferase activity
APJL_0815	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
APJL_0816	COG1530	ribonuclease E activity
APJL_0817	COG1944	ATP diphosphatase activity
APJL_0820	COG0500	methyltransferase
APJL_0822	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
APJL_0825	COG2351	hydroxyisourate hydrolase activity
APJL_0827	COG0586	Pfam SNARE associated Golgi protein
APJL_0828	COG0187	DNA topoisomerase II activity
APJL_0830	COG1349	DNA-binding transcription factor activity
APJL_0831	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
APJL_0833	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
APJL_0834	COG4988	ABC transporter
APJL_0836	COG2911	Protein conserved in bacteria
APJL_0837	COG0729	surface antigen
APJL_0838	COG2861	carbohydrate metabolic process
APJL_0839	COG4942	peptidase
APJL_0840	COG0588	phosphoglycerate mutase activity
APJL_0842	COG0572	uridine kinase
APJL_0843	COG0717	Belongs to the dCTP deaminase family
APJL_0844	COG1309	transcriptional regulator
APJL_0845	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
APJL_0846	COG1129	ABC transporter
APJL_0846	COG0842	Transport permease protein
APJL_0847	COG0842	Transport permease protein
APJL_0849	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
APJL_0850	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
APJL_0851	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
APJL_0855	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
APJL_0856	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
APJL_0858	COG0635	Involved in the biosynthesis of porphyrin-containing compound
APJL_0859	COG4166	transmembrane transport
APJL_0861	COG0444	Belongs to the ABC transporter superfamily
APJL_0862	COG4608	Belongs to the ABC transporter superfamily
APJL_0863	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
APJL_0864	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
APJL_0866	COG0747	negative chemotaxis
APJL_0867	COG0814	amino acid
APJL_0868	COG1760	l-serine dehydratase
APJL_0870	COG0134	indole-3-glycerol-phosphate synthase activity
APJL_0870	COG0135	phosphoribosylanthranilate isomerase activity
APJL_0871	COG3177	Filamentation induced by cAMP protein fic
APJL_0872	COG3098	single-species biofilm formation
APJL_0873	COG0564	pseudouridine synthase activity
APJL_0874	COG3140	Belongs to the UPF0181 family
APJL_0876	COG3025	triphosphatase activity
APJL_0877	COG3106	COG3106 Predicted ATPase
APJL_0879	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
APJL_0881	COG1473	amidohydrolase
APJL_0882	COG3069	C4-dicarboxylate transmembrane transporter activity
APJL_0884	COG0495	leucyl-tRNA aminoacylation
APJL_0885	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
APJL_0886	COG1466	dna polymerase III delta subunit
APJL_0887	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
APJL_0888	COG0237	dephospho-CoA kinase activity
APJL_0890	COG1459	type II secretion system
APJL_0891	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
APJL_0892	COG4969	Belongs to the N-Me-Phe pilin family
APJL_0893	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
APJL_0895	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
APJL_0896	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
APJL_0897	COG0730	response to heat
APJL_0898	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
APJL_0899	COG0183	Belongs to the thiolase family
APJL_0900	COG1024	Enoyl-CoA hydratase
APJL_0900	COG1250	3-hydroxyacyl-CoA dehydrogenase
APJL_0903	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
APJL_0904	COG3383	formate dehydrogenase (NAD+) activity
APJL_0904	COG0243	molybdopterin cofactor binding
APJL_0905	COG3383	formate dehydrogenase (NAD+) activity
APJL_0905	COG0243	molybdopterin cofactor binding
APJL_0906	COG0437	4 iron, 4 sulfur cluster binding
APJL_0907	COG2864	formate dehydrogenase
APJL_0908	COG3058	Necessary for formate dehydrogenase activity
APJL_0912	COG1560	Kdo2-lipid A biosynthetic process
APJL_0913	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
APJL_0915	COG0302	gtp cyclohydrolase
APJL_0916	COG3642	lipopolysaccharide core region biosynthetic process
APJL_0918	COG0110	maltose O-acetyltransferase activity
APJL_0920	COG0583	DNA-binding transcription factor activity
APJL_0924	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
APJL_0926	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
APJL_0927	COG0617	tRNA 3'-terminal CCA addition
APJL_0928	COG2963	transposase activity
APJL_0929	COG2801	Transposase and inactivated derivatives
APJL_0933	COG2975	iron-sulfur cluster assembly
APJL_0934	COG0633	Ferredoxin
APJL_0935	COG0443	Heat shock 70 kDa protein
APJL_0938	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
APJL_0940	COG0822	iron-sulfur transferase activity
APJL_0941	COG1104	cysteine desulfurase activity
APJL_0942	COG1959	2 iron, 2 sulfur cluster binding
APJL_0944	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
APJL_0945	COG5002	protein histidine kinase activity
APJL_0945	COG2198	Histidine kinase
APJL_0945	COG0784	Response regulator, receiver
APJL_0946	COG0697	spore germination
APJL_0947	COG2840	Smr protein MutS2
APJL_0948	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
APJL_0949	COG2226	methyltransferase
APJL_0950	COG2830	Protein of unknown function (DUF452)
APJL_0951	COG0156	8-amino-7-oxononanoate synthase activity
APJL_0952	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
APJL_0954	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
APJL_0955	COG2027	D-alanyl-D-alanine carboxypeptidase
APJL_0959	COG2801	Transposase and inactivated derivatives
APJL_0961	COG2856	Zn peptidase
APJL_0962	COG3620	sequence-specific DNA binding
APJL_0969	COG1444	tRNA N-acetyltransferase activity
APJL_0970	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
APJL_0971	COG0138	bifunctional purine biosynthesis protein purh
APJL_0972	COG2801	Transposase and inactivated derivatives
APJL_0979	COG3210	domain, Protein
APJL_0980	COG2831	hemolysin activation secretion protein
APJL_0982	COG0635	Involved in the biosynthesis of porphyrin-containing compound
APJL_0984	COG3078	GTPase activator activity
APJL_0986	COG0786	glutamate:sodium symporter activity
APJL_0989	COG2350	Protein conserved in bacteria
APJL_0990	COG1607	acyl-coa hydrolase
APJL_0993	COG3092	negative regulation of chromosome organization
APJL_0996	COG2056	Na+-H+ antiporter family
APJL_0997	COG0708	Exodeoxyribonuclease III
APJL_0998	COG0583	DNA-binding transcription factor activity
APJL_1002	COG0254	rRNA binding
APJL_1005	COG0753	catalase activity
APJL_1006	COG2963	transposase activity
APJL_1007	COG2801	Transposase and inactivated derivatives
APJL_1008	COG1408	metallophosphoesterase
APJL_1009	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
APJL_1010	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
APJL_1011	COG1085	galactose-1-phosphate uridylyltransferase
APJL_1013	COG2017	converts alpha-aldose to the beta-anomer
APJL_1018	COG0489	protein tyrosine kinase activity
APJL_1020	COG2095	MarC family integral membrane protein
APJL_1021	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
APJL_1023	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
APJL_1024	COG2354	Protein conserved in bacteria
APJL_1025	COG3071	HemY protein
APJL_1026	COG2959	enzyme of heme biosynthesis
APJL_1028	COG0181	hydroxymethylbilane synthase activity
APJL_1029	COG1012	belongs to the aldehyde dehydrogenase family
APJL_1029	COG1454	alcohol dehydrogenase
APJL_1034	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
APJL_1035	COG2364	Membrane
APJL_1036	COG0800	Aldolase
APJL_1037	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
APJL_1038	COG1904	glucuronate isomerase
APJL_1040	COG2186	Transcriptional regulator
APJL_1042	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
APJL_1042	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
APJL_1043	COG1216	Glycosyl transferase, family 2
APJL_1044	COG1216	Glycosyl transferase, family 2
APJL_1046	COG3306	glycosyltransferase involved in LPS biosynthesis
APJL_1048	COG5039	Polysaccharide pyruvyl transferase
APJL_1049	COG1434	Gram-negative-bacterium-type cell wall biogenesis
APJL_1050	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
APJL_1051	COG0077	Prephenate dehydratase
APJL_1051	COG1605	Chorismate mutase
APJL_1052	COG0339	signal peptide processing
APJL_1053	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
APJL_1054	COG1882	Formate acetyltransferase
APJL_1055	COG2116	formate transmembrane transporter activity
APJL_1056	COG1238	metal cluster binding
APJL_1057	COG0501	Belongs to the peptidase M48B family
APJL_1059	COG2431	L-lysine efflux transmembrane transporter activity
APJL_1060	COG1169	isochorismate synthase
APJL_1061	COG0436	Aminotransferase
APJL_1062	COG2962	Rard protein
APJL_1063	COG2962	Rard protein
APJL_1064	COG1280	lysine exporter protein (LysE YggA)
APJL_1065	COG4771	TonB-dependent receptor
APJL_1065	COG1629	transport
APJL_1066	COG0748	coenzyme F420 binding
APJL_1068	COG4235	cytochrome complex assembly
APJL_1068	COG3088	subunit of a heme lyase
APJL_1069	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
APJL_1070	COG1138	Cytochrome C-type biogenesis protein
APJL_1071	COG0475	glutathione-regulated potassium exporter activity
APJL_1071	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
APJL_1073	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
APJL_1074	COG2963	transposase activity
APJL_1075	COG2801	Transposase and inactivated derivatives
APJL_1076	COG3111	PFAM Bacterial OB fold (BOF) protein
APJL_1079	COG0745	RESPONSE REGULATOR receiver
APJL_1080	COG0642	Histidine kinase
APJL_1081	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
APJL_1082	COG1862	Preprotein translocase
APJL_1083	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
APJL_1084	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
APJL_1085	COG1528	Iron-storage protein
APJL_1086	COG1528	Iron-storage protein
APJL_1087	COG2252	PERMEase
APJL_1088	COG0424	maF-like protein
APJL_1090	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
APJL_1090	COG0301	tRNA thio-modification
APJL_1092	COG0330	HflC and HflK could
APJL_1093	COG0330	HflC and HflK could
APJL_1094	COG3118	belongs to the thioredoxin family
APJL_1098	COG0531	amino acid
APJL_1099	COG0531	amino acid
APJL_1102	COG3047	cAMP biosynthetic process
APJL_1103	COG0542	response to heat
APJL_1104	COG0798	PFAM Bile acid sodium symporter
APJL_1105	COG1393	Belongs to the ArsC family
APJL_1107	COG1027	Aspartate ammonia-lyase
APJL_1109	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
APJL_1110	COG3583	domain protein
APJL_1110	COG3525	Glycosyl hydrolase, family 20, catalytic domain
APJL_1110	COG3064	Membrane
APJL_1112	COG0720	synthase
APJL_1113	COG0602	queuosine metabolic process
APJL_1118	COG0795	lipopolysaccharide-transporting ATPase activity
APJL_1119	COG0795	lipopolysaccharide-transporting ATPase activity
APJL_1122	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
APJL_1127	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
APJL_1129	COG0861	Integral membrane protein TerC family
APJL_1133	COG1051	belongs to the nudix hydrolase family
APJL_1134	COG4316	Uncharacterized protein conserved in bacteria (DUF2251)
APJL_1136	COG1965	Belongs to the frataxin family
APJL_1139	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
APJL_1140	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
APJL_1141	COG0564	pseudouridine synthase activity
APJL_1143	COG0205	6-phosphofructokinase activity
APJL_1144	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
APJL_1145	COG1525	nuclease
APJL_1146	COG1115	amino acid carrier protein
APJL_1147	COG0628	permease
APJL_1150	COG3307	-O-antigen
APJL_1151	COG1519	Transferase
APJL_1153	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
APJL_1154	COG0802	atpase or kinase
APJL_1155	COG0860	N-Acetylmuramoyl-L-alanine amidase
APJL_1155	COG1388	LysM domain
APJL_1157	COG2960	long-chain fatty acid transporting porin activity
APJL_1158	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
APJL_1160	COG0551	DNA topoisomerase type I activity
APJL_1162	COG2137	regulation of response to DNA damage stimulus
APJL_1163	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
APJL_1164	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
APJL_1166	COG1322	Protein conserved in bacteria
APJL_1167	COG0512	Glutamine amidotransferase of anthranilate synthase
APJL_1169	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
APJL_1170	COG0494	nUDIX hydrolase
APJL_1173	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
APJL_1174	COG0612	Peptidase, M16
APJL_1176	COG0471	metal ion transport
APJL_1177	COG0583	DNA-binding transcription factor activity
APJL_1178	COG3266	domain, Protein
APJL_1179	COG1187	pseudouridine synthase activity
APJL_1180	COG0009	L-threonylcarbamoyladenylate synthase
APJL_1182	COG2837	iron assimilation
APJL_1183	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
APJL_1184	COG0512	Glutamine amidotransferase of anthranilate synthase
APJL_1186	COG2226	methyltransferase
APJL_1187	COG2268	Band 7 protein
APJL_1188	COG2841	Protein conserved in bacteria
APJL_1191	COG2965	DNA replication, synthesis of RNA primer
APJL_1194	COG3201	nicotinamide mononucleotide transporter
APJL_1195	COG2976	Protein conserved in bacteria
APJL_1198	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
APJL_1199	COG1426	Protein conserved in bacteria
APJL_1200	COG0659	secondary active sulfate transmembrane transporter activity
APJL_1202	COG0673	inositol 2-dehydrogenase activity
APJL_1203	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
APJL_1203	COG0475	glutathione-regulated potassium exporter activity
APJL_1209	COG2207	Transcriptional regulator
APJL_1211	COG1902	pentaerythritol trinitrate reductase activity
APJL_1212	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
APJL_1213	COG2084	Dehydrogenase
APJL_1214	COG0778	Nitroreductase
APJL_1215	COG2095	MarC family integral membrane protein
APJL_1218	COG0625	glutathione transferase activity
APJL_1221	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
APJL_1222	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
APJL_1225	COG1275	C4-dicarboxylate transporter malic acid transport protein
APJL_1226	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
APJL_1228	COG1132	(ABC) transporter
APJL_1229	COG1854	S-ribosylhomocysteine lyase activity
APJL_1230	COG3008	intermembrane lipid transfer
APJL_1231	COG0735	belongs to the Fur family
APJL_1232	COG0716	FMN binding
APJL_1234	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
APJL_1235	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
APJL_1236	COG2252	PERMEase
APJL_1237	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
APJL_1238	COG2081	HI0933 family
APJL_1239	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
APJL_1241	COG0560	Phosphoserine phosphatase
APJL_1244	COG0058	SHG alpha-glucan phosphorylase activity
APJL_1245	COG2909	trisaccharide binding
APJL_1247	COG4580	involved in the transport of maltose and maltodextrins
APJL_1248	COG3842	ATPase activity
APJL_1251	COG3833	ABC-type maltose transport systems, permease component
APJL_1252	COG1640	4-alpha-glucanotransferase
APJL_1253	COG1966	Carbon starvation protein
APJL_1254	COG0084	hydrolase, TatD family'
APJL_1255	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
APJL_1257	COG0778	Nitroreductase
APJL_1260	COG4172	Belongs to the ABC transporter superfamily
APJL_1261	COG0191	fructose-bisphosphate aldolase activity
APJL_1262	COG0126	phosphoglycerate kinase activity
APJL_1263	COG0471	metal ion transport
APJL_1264	COG0471	metal ion transport
APJL_1265	COG0471	metal ion transport
APJL_1266	COG0187	DNA topoisomerase II activity
APJL_1267	COG5002	protein histidine kinase activity
APJL_1268	COG0745	RESPONSE REGULATOR receiver
APJL_1273	COG0789	Transcriptional regulator
APJL_1275	COG2217	Heavy metal translocating P-type atpase
APJL_1277	COG0300	oxidoreductase activity
APJL_1278	COG0778	Nitroreductase
APJL_1279	COG0616	signal peptide processing
APJL_1280	COG3719	Belongs to the RNase T2 family
APJL_1282	COG1252	NADH dehydrogenase
APJL_1283	COG2183	response to ionizing radiation
APJL_1284	COG3063	Type IV pilus biogenesis stability protein PilW
APJL_1287	COG2161	toxin-antitoxin pair type II binding
APJL_1288	COG4115	mRNA cleavage
APJL_1289	COG2835	tetraacyldisaccharide 4'-kinase activity
APJL_1290	COG1663	tetraacyldisaccharide 4'-kinase activity
APJL_1291	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
APJL_1292	COG0740	serine-type endopeptidase activity
APJL_1293	COG2166	iron-sulfur cluster assembly
APJL_1294	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
APJL_1295	COG0488	(ABC) transporter
APJL_1296	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
APJL_1300	COG5007	Belongs to the BolA IbaG family
APJL_1302	COG2854	intermembrane phospholipid transfer
APJL_1303	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
APJL_1304	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
APJL_1305	COG1127	ABC transporter
APJL_1306	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
APJL_1307	COG1090	epimerase
APJL_1311	COG0563	adenylate kinase activity
APJL_1313	COG2814	Major facilitator Superfamily
APJL_1319	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
APJL_1321	COG1794	racemase activity, acting on amino acids and derivatives
APJL_1322	COG2814	Major facilitator Superfamily
APJL_1323	COG0363	glucosamine-6-phosphate deaminase activity
APJL_1324	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
APJL_1325	COG1218	3'(2'),5'-bisphosphate nucleotidase
APJL_1326	COG0494	nUDIX hydrolase
APJL_1327	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
APJL_1329	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
APJL_1331	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
APJL_1332	COG0549	Belongs to the carbamate kinase family
APJL_1334	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
APJL_1335	COG1178	ABC-type Fe3 transport system permease component
APJL_1336	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
APJL_1337	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
APJL_1338	COG2190	(PTS) system
APJL_1340	COG0210	DNA helicase
APJL_1341	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
APJL_1342	COG0409	Hydrogenase expression formation protein
APJL_1343	COG0309	Hydrogenase expression formation protein (HypE)
APJL_1348	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
APJL_1349	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
APJL_1350	COG0437	4 iron, 4 sulfur cluster binding
APJL_1351	COG5557	Pfam Polysulphide reductase, NrfD
APJL_1352	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
APJL_1353	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
APJL_1354	COG1773	rubredoxin
APJL_1355	COG0298	carbon dioxide binding
APJL_1356	COG0375	protein maturation
APJL_1357	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
APJL_1358	COG0308	aminopeptidase N
APJL_1359	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
APJL_1360	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
APJL_1361	COG0295	cytidine deaminase activity
APJL_1362	COG2177	Part of the ABC transporter FtsEX involved in
APJL_1363	COG2884	Cell division ATP-binding protein ftsE
APJL_1364	COG0552	protein localization to endoplasmic reticulum
APJL_1365	COG0742	ribosomal rna small subunit methyltransferase
APJL_1366	COG3099	Belongs to the UPF0263 family
APJL_1367	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
APJL_1369	COG4160	amino acid transport
APJL_1370	COG4215	(ABC) transporter
APJL_1371	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
APJL_1372	COG1126	abc transporter atp-binding protein
APJL_1373	COG1881	PFAM PEBP family protein
APJL_1375	COG3620	sequence-specific DNA binding
APJL_1377	COG4232	protein-disulfide reductase activity
APJL_1378	COG3101	peptidyl-lysine hydroxylation
APJL_1380	COG3107	peptidoglycan biosynthetic process
APJL_1382	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
APJL_1385	COG1138	Cytochrome C-type biogenesis protein
APJL_1387	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
APJL_1388	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
APJL_1389	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
APJL_1390	COG4133	protoheme IX ABC transporter activity
APJL_1391	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
APJL_1393	COG3630	sodium ion export across plasma membrane
APJL_1395	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
APJL_1396	COG2824	Alkylphosphonate utilization operon protein PhnA
APJL_1397	COG1858	cytochrome C peroxidase
APJL_1399	COG0762	integral membrane protein
APJL_1400	COG3171	Protein conserved in bacteria
APJL_1401	COG0220	tRNA (guanine-N7-)-methyltransferase activity
APJL_1402	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
APJL_1403	COG0416	fatty acid biosynthetic process
APJL_1404	COG0333	Belongs to the bacterial ribosomal protein bL32 family
APJL_1405	COG1399	metal-binding, possibly nucleic acid-binding protein
APJL_1406	COG4137	Cytochrome C assembly protein
APJL_1407	COG4536	flavin adenine dinucleotide binding
APJL_1408	COG0733	neurotransmitter:sodium symporter activity
APJL_1410	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
APJL_1410	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
APJL_1411	COG3715	PTS system
APJL_1412	COG3716	PTS system mannose fructose sorbose family IID component
APJL_1416	COG1840	ABC-type Fe3 transport system, periplasmic component
APJL_1419	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
APJL_1422	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
APJL_1425	COG0049	tRNA binding
APJL_1426	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
APJL_1427	COG0859	PFAM glycosyl transferase family 9
APJL_1428	COG0859	PFAM glycosyl transferase family 9
APJL_1430	COG3266	domain, Protein
APJL_1430	COG3061	Opacity-associated protein A
APJL_1431	COG1555	photosystem II stabilization
APJL_1437	COG4974	Belongs to the 'phage' integrase family
APJL_1439	COG2918	glutathione biosynthetic process
APJL_1439	COG1181	Belongs to the D-alanine--D-alanine ligase family
APJL_1441	COG0814	amino acid
APJL_1442	COG3691	Protein conserved in bacteria
APJL_1445	COG1022	Amp-dependent synthetase and ligase
APJL_1450	COG4211	Belongs to the binding-protein-dependent transport system permease family
APJL_1451	COG1129	ABC transporter
APJL_1452	COG1879	ABC-type sugar transport system periplasmic component
APJL_1453	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
APJL_1453	COG2885	chlorophyll binding
APJL_1454	COG0277	FAD linked oxidase domain protein
APJL_1454	COG0247	lactate metabolic process
APJL_1455	COG2050	protein possibly involved in aromatic compounds catabolism
APJL_1457	COG3005	denitrification pathway
APJL_1458	COG3043	anaerobic respiration
APJL_1459	COG0348	domain, Protein
APJL_1460	COG0437	4 iron, 4 sulfur cluster binding
APJL_1461	COG0243	molybdopterin cofactor binding
APJL_1463	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
APJL_1464	COG2249	NAD(P)H dehydrogenase (quinone) activity
APJL_1465	COG2801	Transposase and inactivated derivatives
APJL_1466	COG2963	transposase activity
APJL_1468	COG1530	ribonuclease E activity
APJL_1470	COG1755	Isoprenylcysteine carboxyl methyltransferase
APJL_1472	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
APJL_1474	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
APJL_1476	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
APJL_1479	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
APJL_1481	COG1720	tRNA m6t6A37 methyltransferase activity
APJL_1482	COG4804	nuclease activity
APJL_1483	COG1575	Belongs to the MenA family. Type 1 subfamily
APJL_1485	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
APJL_1487	COG0438	transferase activity, transferring glycosyl groups
APJL_1489	COG0438	transferase activity, transferring glycosyl groups
APJL_1491	COG2244	polysaccharide biosynthetic process
APJL_1492	COG0562	UDP-galactopyranose mutase
APJL_1493	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
APJL_1494	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
APJL_1498	COG0828	Belongs to the bacterial ribosomal protein bS21 family
APJL_1500	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
APJL_1501	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
APJL_1503	COG0557	exoribonuclease II activity
APJL_1504	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
APJL_1505	COG1309	transcriptional regulator
APJL_1506	COG0583	DNA-binding transcription factor activity
APJL_1507	COG0678	peroxiredoxin activity
APJL_1507	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
APJL_1511	COG0825	malonyl-CoA metabolic process
APJL_1513	COG0204	Acyl-transferase
APJL_1514	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
APJL_1519	COG0783	Belongs to the Dps family
APJL_1522	COG1289	transmembrane transporter activity
APJL_1523	COG1803	Methylglyoxal synthase
APJL_1524	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
APJL_1525	COG2963	transposase activity
APJL_1526	COG2801	Transposase and inactivated derivatives
APJL_1530	COG2153	protein acetylation
APJL_1531	COG2927	DNA polymerase III (CHI subunit)
APJL_1532	COG1652	LysM domain
APJL_1534	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
APJL_1537	COG1045	serine acetyltransferase
APJL_1538	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
APJL_1539	COG1072	(Pantothenic acid kinase))
APJL_1540	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
APJL_1543	COG0521	Mo-molybdopterin cofactor biosynthetic process
APJL_1545	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
APJL_1547	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
APJL_1550	COG0625	glutathione transferase activity
APJL_1551	COG0019	diaminopimelate decarboxylase activity
APJL_1553	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
APJL_1554	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
APJL_1555	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
APJL_1556	COG1053	succinate dehydrogenase
APJL_1557	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
APJL_1559	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
APJL_1560	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
APJL_1570	COG4974	Belongs to the 'phage' integrase family
APJL_1571	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
APJL_1574	COG1151	hydroxylamine reductase activity
APJL_1575	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
APJL_1576	COG2244	polysaccharide biosynthetic process
APJL_1577	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
APJL_1579	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
APJL_1580	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
APJL_1581	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
APJL_1585	COG0728	peptidoglycan biosynthetic process
APJL_1586	COG0268	Binds directly to 16S ribosomal RNA
APJL_1587	COG0569	domain protein
APJL_1588	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
APJL_1589	COG3276	selenocysteine insertion sequence binding
APJL_1590	COG1921	L-seryl-tRNASec selenium transferase activity
APJL_1591	COG0716	FMN binding
APJL_1597	COG4771	TonB-dependent receptor
APJL_1597	COG1629	transport
APJL_1602	COG2431	L-lysine efflux transmembrane transporter activity
APJL_1604	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
APJL_1605	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
APJL_1610	COG0438	transferase activity, transferring glycosyl groups
APJL_1613	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
APJL_1619	COG1119	ATPase activity
APJL_1622	COG1739	Uncharacterized protein family UPF0029
APJL_1623	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
APJL_1624	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
APJL_1628	COG2921	Belongs to the UPF0250 family
APJL_1629	COG1686	Belongs to the peptidase S11 family
APJL_1630	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
APJL_1631	COG0772	Belongs to the SEDS family
APJL_1632	COG0768	penicillin binding
APJL_1634	COG0799	negative regulation of ribosome biogenesis
APJL_1636	COG1126	abc transporter atp-binding protein
APJL_1637	COG0765	amino acid transport
APJL_1639	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
APJL_1641	COG3691	Protein conserved in bacteria
APJL_1650	COG0832	Belongs to the urease beta subunit family
APJL_1651	COG0831	urea catabolic process
APJL_1653	COG1122	ATPase activity
APJL_1654	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
APJL_1655	COG0310	cobalt ion transport
APJL_1656	COG0310	cobalt ion transport
APJL_1657	COG5266	PFAM Nickel transport complex, NikM subunit, transmembrane
APJL_1660	COG0490	domain, Protein
APJL_1660	COG0471	metal ion transport
APJL_1661	COG3722	fumarate hydratase activity
APJL_1664	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
APJL_1665	COG1349	DNA-binding transcription factor activity
APJL_1668	COG3914	O-linked N-acetylglucosamine transferase SPINDLY family
APJL_1671	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
APJL_1672	COG2900	Belongs to the SlyX family
APJL_1673	COG0545	Peptidyl-prolyl cis-trans isomerase
APJL_1674	COG2964	Protein conserved in bacteria
APJL_1675	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
APJL_1677	COG2168	tRNA wobble position uridine thiolation
APJL_1682	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
APJL_1689	COG0561	phosphatase activity
APJL_1690	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
APJL_1691	COG3012	SEC-C Motif Domain Protein
APJL_1693	COG3716	PTS system mannose fructose sorbose family IID component
APJL_1694	COG3715	PTS system
APJL_1695	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
APJL_1695	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
APJL_1696	COG2610	gluconate transmembrane transporter activity
APJL_1697	COG3265	gluconokinase activity
APJL_1698	COG1609	Transcriptional regulator
APJL_1699	COG1609	Transcriptional regulator
APJL_1700	COG1869	D-ribose catabolic process
APJL_1702	COG1172	Belongs to the binding-protein-dependent transport system permease family
APJL_1703	COG1879	ABC-type sugar transport system periplasmic component
APJL_1704	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
APJL_1705	COG0243	molybdopterin cofactor binding
APJL_1706	COG0437	4 iron, 4 sulfur cluster binding
APJL_1707	COG3302	dmso reductase anchor subunit
APJL_1708	COG3381	protein complex oligomerization
APJL_1709	COG2221	Nitrite and sulphite reductase 4Fe-4S
APJL_1709	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
APJL_1715	COG1349	DNA-binding transcription factor activity
APJL_1716	COG2407	Converts the aldose L-fucose into the corresponding ketose L-fuculose
APJL_1717	COG1070	Carbohydrate kinase
APJL_1718	COG4154	Belongs to the RbsD FucU family
APJL_1719	COG0235	Class ii aldolase
APJL_1720	COG0738	Major facilitator superfamily
APJL_1721	COG1454	alcohol dehydrogenase
APJL_1722	COG3477	response to acidic pH
APJL_1725	COG1126	abc transporter atp-binding protein
APJL_1726	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
APJL_1730	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
APJL_1735	COG3623	hexulose-6-phosphate isomerase
APJL_1736	COG0235	Class ii aldolase
APJL_1737	COG0545	Peptidyl-prolyl cis-trans isomerase
APJL_1739	COG1476	TRANSCRIPTIONal
APJL_1742	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
APJL_1744	COG0758	DNA mediated transformation
APJL_1745	COG1297	OPT oligopeptide transporter protein
APJL_1749	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
APJL_1751	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
APJL_1755	COG0222	ribosome binding
APJL_1772	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
APJL_1774	COG0346	lactoylglutathione lyase activity
APJL_1775	COG1194	a g-specific adenine glycosylase
APJL_1776	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
APJL_1777	COG0741	lytic transglycosylase activity
APJL_1778	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
APJL_1779	COG0737	Belongs to the 5'-nucleotidase family
APJL_1780	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
APJL_1781	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
APJL_1782	COG0606	chelatase, subunit chli
APJL_1784	COG2267	carboxylic ester hydrolase activity
APJL_1791	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
APJL_1794	COG0051	transcription antitermination factor activity, RNA binding
APJL_1795	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
APJL_1796	COG0088	Forms part of the polypeptide exit tunnel
APJL_1797	COG0089	rRNA binding
APJL_1798	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
APJL_1799	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
APJL_1800	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
APJL_1801	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
APJL_1802	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
APJL_1803	COG0255	Belongs to the universal ribosomal protein uL29 family
APJL_1804	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
APJL_1807	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
APJL_1809	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
APJL_1810	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
APJL_1811	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
APJL_1812	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
APJL_1813	COG1841	ribosomal large subunit assembly
APJL_1814	COG0200	Binds to the 23S rRNA
APJL_1815	COG0201	protein transport
APJL_1817	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
APJL_1818	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
APJL_1819	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
APJL_1820	COG0202	RNA polymerase activity
APJL_1822	COG0228	four-way junction DNA binding
APJL_1823	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
APJL_1824	COG0336	Belongs to the RNA methyltransferase TrmD family
APJL_1825	COG0335	large ribosomal subunit rRNA binding
APJL_1826	COG2850	peptidyl-arginine hydroxylation
APJL_1828	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
APJL_1837	COG2852	Protein conserved in bacteria
APJL_1842	COG2832	Protein of unknown function (DUF454)
APJL_1844	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
APJL_1846	COG0084	hydrolase, TatD family'
APJL_1850	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
APJL_1852	COG0470	DNA polymerase III
APJL_1853	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
APJL_1854	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
APJL_1855	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
APJL_1856	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
APJL_1857	COG0254	rRNA binding
APJL_1858	COG0257	Belongs to the bacterial ribosomal protein bL36 family
APJL_1859	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
APJL_1860	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
APJL_1861	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
APJL_1863	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
APJL_1869	COG1595	DNA-templated transcription, initiation
APJL_1872	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
APJL_1876	COG2502	aspartate--ammonia ligase
APJL_1877	COG1522	sequence-specific DNA binding
APJL_1878	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
APJL_1879	COG3161	chorismate lyase activity
APJL_1887	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
APJL_1889	COG4208	sulfate ABC transporter
APJL_1890	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
APJL_1893	COG0812	UDP-N-acetylmuramate dehydrogenase activity
APJL_1895	COG2963	transposase activity
APJL_1896	COG2801	Transposase and inactivated derivatives
APJL_1897	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
APJL_1898	COG2995	paraquat-inducible protein a
APJL_1899	COG1305	Transglutaminase-like
APJL_1901	COG2608	mercury ion transmembrane transporter activity
APJL_1902	COG1979	alcohol dehydrogenase
APJL_1903	COG0583	DNA-binding transcription factor activity
APJL_1904	COG2171	N-acyltransferase activity
APJL_1905	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
APJL_1907	COG0511	ligase activity, forming carbon-carbon bonds
APJL_1908	COG0439	Biotin carboxylase
APJL_1910	COG3084	Protein conserved in bacteria
APJL_1911	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
APJL_1914	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
APJL_1914	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
APJL_1916	COG1876	peptidase activity
APJL_1918	COG1393	Belongs to the ArsC family
APJL_1920	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
APJL_1921	COG0564	pseudouridine synthase activity
APJL_1923	COG0668	transmembrane transport
APJL_1924	COG0439	Biotin carboxylase
APJL_1926	COG1025	Belongs to the peptidase M16 family
APJL_1927	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
APJL_1932	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
APJL_1933	COG1067	ATP-dependent peptidase activity
APJL_1934	COG3120	sequence-specific DNA binding
APJL_1935	COG0180	Tryptophanyl-tRNA synthetase
APJL_1939	COG0730	response to heat
APJL_1943	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
APJL_1946	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
APJL_1947	COG2116	formate transmembrane transporter activity
APJL_1949	COG2801	Transposase and inactivated derivatives
APJL_1950	COG2963	transposase activity
APJL_1954	COG1070	Carbohydrate kinase
APJL_1955	COG2115	Belongs to the xylose isomerase family
APJL_1956	COG4213	ABC transporter substrate-binding protein
APJL_1957	COG1129	ABC transporter
APJL_1958	COG4214	carbohydrate transport
APJL_1959	COG2207	Transcriptional regulator
APJL_1959	COG1609	Transcriptional regulator
APJL_1960	COG3590	peptidase
APJL_1962	COG4145	pantothenate transmembrane transporter activity
APJL_1963	COG3924	membrane
APJL_1964	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
APJL_1965	COG2853	Lipoprotein
APJL_1966	COG0676	glucose-6-phosphate 1-epimerase activity
APJL_1969	COG1649	PFAM Uncharacterised BCR, COG1649
APJL_1969	COG0726	polysaccharide deacetylase
APJL_1970	COG1215	transferase activity, transferring glycosyl groups
APJL_1972	COG0149	triose-phosphate isomerase activity
APJL_1974	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
APJL_1975	COG1238	metal cluster binding
APJL_1978	COG4942	peptidase
APJL_1978	COG1388	LysM domain
APJL_1979	COG2818	Glycosylase
APJL_1981	COG0700	Nucleoside recognition
APJL_1982	COG3366	ferrous iron transmembrane transporter activity
APJL_1984	COG0230	Belongs to the bacterial ribosomal protein bL34 family
APJL_1985	COG0594	ribonuclease P activity
APJL_1987	COG0174	glutamine synthetase
APJL_1988	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
APJL_1989	COG0494	nUDIX hydrolase
APJL_1990	COG3223	Belongs to the PsiE family
APJL_1996	COG1490	D-aminoacyl-tRNA deacylase activity
APJL_1997	COG1295	ribonuclease BN
APJL_2006	COG1064	alcohol dehydrogenase
APJL_2009	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
APJL_2010	COG1611	Belongs to the LOG family
APJL_2011	COG1694	Mazg nucleotide pyrophosphohydrolase
APJL_2014	COG1309	transcriptional regulator
APJL_2016	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
APJL_2017	COG2003	Belongs to the UPF0758 family
APJL_2018	COG0227	Belongs to the bacterial ribosomal protein bL28 family
APJL_2019	COG0267	Belongs to the bacterial ribosomal protein bL33 family
APJL_2023	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
APJL_2024	COG0076	glutamate decarboxylase activity
APJL_2025	COG0425	Belongs to the sulfur carrier protein TusA family
APJL_2026	COG2391	methyltransferase activity
APJL_2027	COG3085	chromosome segregation
APJL_2029	COG0598	Magnesium transport protein CorA
APJL_2030	COG2226	methyltransferase
APJL_2033	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
APJL_2034	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
APJL_2035	COG0805	protein transport
APJL_2039	COG1114	Component of the transport system for branched-chain amino acids
APJL_2040	COG1028	Short-chain dehydrogenase reductase Sdr
APJL_2041	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
APJL_2042	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
APJL_2043	COG0142	geranyltranstransferase activity
APJL_2045	COG0431	NADPH-dependent FMN reductase
APJL_2046	COG2259	Doxx family
APJL_2047	COG0261	This protein binds to 23S rRNA in the presence of protein L20
APJL_2048	COG0211	Belongs to the bacterial ribosomal protein bL27 family
APJL_2049	COG0697	spore germination
APJL_2054	COG1040	competence protein
APJL_2057	COG0456	acetyltransferase
APJL_2058	COG0513	Belongs to the DEAD box helicase family
APJL_2060	COG0747	negative chemotaxis
APJL_2062	COG1584	GPR1 FUN34 yaaH family protein
APJL_2063	COG1120	ATPase activity
APJL_2064	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
APJL_2068	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
APJL_2069	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
APJL_2070	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
APJL_2071	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
APJL_2075	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
APJL_2078	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
APJL_2078	COG0140	phosphoribosyl-ATP diphosphatase activity
APJL_2079	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
APJL_2080	COG0024	Methionine aminopeptidase
APJL_2084	COG1621	beta-fructofuranosidase activity
APJL_2085	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
APJL_2087	COG4591	ABC-type transport system involved in lipoprotein release permease component
APJL_2088	COG1136	(ABC) transporter
APJL_2089	COG4591	ABC-type transport system involved in lipoprotein release permease component
APJL_2090	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
APJL_2096	COG2897	thiosulfate sulfurtransferase activity
APJL_2097	COG2391	methyltransferase activity