APJL_1249 0665724d1176c437e827c4018edcc22d 394 Gene3D G3DSA:3.40.190.10 135 385 2.6E-132 T 11-10-2018 APJL_1249 0665724d1176c437e827c4018edcc22d 394 Gene3D G3DSA:3.40.190.10 45 354 2.6E-132 T 11-10-2018 APJL_1249 0665724d1176c437e827c4018edcc22d 394 SUPERFAMILY SSF53850 28 392 6.09E-88 T 11-10-2018 APJL_1249 0665724d1176c437e827c4018edcc22d 394 Pfam PF13416 Bacterial extracellular solute-binding protein 47 339 1.9E-37 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APJL_1249 0665724d1176c437e827c4018edcc22d 394 PRINTS PR00181 Maltose binding protein signature 67 85 2.7E-78 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 APJL_1249 0665724d1176c437e827c4018edcc22d 394 PRINTS PR00181 Maltose binding protein signature 296 317 2.7E-78 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 APJL_1249 0665724d1176c437e827c4018edcc22d 394 PRINTS PR00181 Maltose binding protein signature 33 51 2.7E-78 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 APJL_1249 0665724d1176c437e827c4018edcc22d 394 PRINTS PR00181 Maltose binding protein signature 230 249 2.7E-78 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 APJL_1249 0665724d1176c437e827c4018edcc22d 394 PRINTS PR00181 Maltose binding protein signature 127 146 2.7E-78 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 APJL_1249 0665724d1176c437e827c4018edcc22d 394 PRINTS PR00181 Maltose binding protein signature 354 373 2.7E-78 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 APJL_1249 0665724d1176c437e827c4018edcc22d 394 PRINTS PR00181 Maltose binding protein signature 168 187 2.7E-78 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 APJL_1249 0665724d1176c437e827c4018edcc22d 394 PRINTS PR00181 Maltose binding protein signature 148 167 2.7E-78 T 11-10-2018 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein GO:0008643|GO:0015144 APJL_0633 fe002095b3ff151c6e68cff768d86299 362 SUPERFAMILY SSF53955 41 356 2.11E-79 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APJL_0633 fe002095b3ff151c6e68cff768d86299 362 Gene3D G3DSA:1.10.530.10 97 353 1.3E-72 T 11-10-2018 APJL_0633 fe002095b3ff151c6e68cff768d86299 362 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 43 356 7.6E-99 T 11-10-2018 IPR011970 Lytic murein transglycosylase APJL_0633 fe002095b3ff151c6e68cff768d86299 362 Gene3D G3DSA:1.10.8.350 81 230 1.3E-72 T 11-10-2018 APJL_0633 fe002095b3ff151c6e68cff768d86299 362 Pfam PF13406 Transglycosylase SLT domain 44 354 8.0E-84 T 11-10-2018 IPR031304 Transglycosylase SLT domain 2 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 SUPERFAMILY SSF56719 389 629 5.23E-80 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 Gene3D G3DSA:3.40.50.670 391 630 3.1E-92 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 Gene3D G3DSA:3.30.565.10 3 216 1.8E-74 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 5 632 0.0 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 Gene3D G3DSA:3.30.230.10 217 390 1.2E-55 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 558 627 5.6E-24 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 3 635 46.202 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 170 3.1E-17 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 SMART SM00387 28 174 5.0E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 449 470 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 363 388 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 470 482 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 239 262 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 295 311 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 339 362 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 539 561 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 504 520 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 150 165 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 27 40 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 175 192 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 193 214 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 136 150 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR01098 Topoisomerase IV subunit B signature 312 327 8.4E-125 T 11-10-2018 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 ProSitePatterns PS00177 DNA topoisomerase II signature. 417 425 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 Pfam PF00204 DNA gyrase B 219 385 1.4E-40 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 110 124 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 562 578 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 518 530 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 32 47 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 267 280 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 480 496 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 67 80 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 498 515 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 PRINTS PR00418 DNA topoisomerase II family signature 415 429 3.1E-60 T 11-10-2018 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 SUPERFAMILY SSF55874 5 216 4.93E-66 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 SMART SM00433 35 631 7.0E-224 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 SUPERFAMILY SSF54211 218 383 1.5E-47 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_1266 8093911b6f95fdd3869530bf9c648ccb 637 Pfam PF01751 Toprim domain 414 523 9.1E-13 T 11-10-2018 IPR006171 TOPRIM domain APJL_0420 824fdfb99338695cf13604305d382dcf 289 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 12 272 57.595 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 APJL_0420 824fdfb99338695cf13604305d382dcf 289 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 13 271 9.3E-92 T 11-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 APJL_0420 824fdfb99338695cf13604305d382dcf 289 SUPERFAMILY SSF53335 20 273 2.6E-78 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0420 824fdfb99338695cf13604305d382dcf 289 Gene3D G3DSA:3.40.50.150 4 207 1.7E-66 T 11-10-2018 APJL_0420 824fdfb99338695cf13604305d382dcf 289 SMART SM00650 28 205 3.6E-87 T 11-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 APJL_0420 824fdfb99338695cf13604305d382dcf 289 Gene3D G3DSA:1.10.8.100 208 275 7.6E-27 T 11-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 APJL_0420 824fdfb99338695cf13604305d382dcf 289 Pfam PF00398 Ribosomal RNA adenine dimethylase 12 271 6.4E-84 T 11-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm APJL_0420 824fdfb99338695cf13604305d382dcf 289 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 44 71 - T 11-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 APJL_0113 4eb538b24ddc2959aaed57f6ab5a4ca9 354 Gene3D G3DSA:3.20.20.210 1 354 7.4E-161 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_0113 4eb538b24ddc2959aaed57f6ab5a4ca9 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.513 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APJL_0113 4eb538b24ddc2959aaed57f6ab5a4ca9 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APJL_0113 4eb538b24ddc2959aaed57f6ab5a4ca9 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APJL_0113 4eb538b24ddc2959aaed57f6ab5a4ca9 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 2.2E-137 T 11-10-2018 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APJL_0113 4eb538b24ddc2959aaed57f6ab5a4ca9 354 SUPERFAMILY SSF51726 2 353 8.2E-123 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_0113 4eb538b24ddc2959aaed57f6ab5a4ca9 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 348 1.4E-141 T 11-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 489 825 1.2E-96 T 11-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 SUPERFAMILY SSF82689 999 1096 2.22E-26 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 958 992 - T 11-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 Pfam PF12795 Mechanosensitive ion channel porin domain 36 267 1.5E-42 T 11-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 Pfam PF00924 Mechanosensitive ion channel 886 1085 1.5E-56 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 Gene3D G3DSA:3.30.70.100 997 1090 1.2E-21 T 11-10-2018 APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 SUPERFAMILY SSF82861 842 927 1.07E-6 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 Gene3D G3DSA:2.30.30.60 944 993 1.0E-12 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily APJL_0751 0ca96fe4e5ebf7de550122c2775df8a7 1114 SUPERFAMILY SSF50182 929 993 4.9E-16 T 11-10-2018 IPR010920 LSM domain superfamily APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 45 61 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 Pfam PF00027 Cyclic nucleotide-binding domain 38 123 5.6E-20 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 Gene3D G3DSA:1.10.10.10 155 223 1.6E-35 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 ProSitePatterns PS00042 Crp-type HTH domain signature. 184 207 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 86 105 - T 11-10-2018 IPR018488 Cyclic nucleotide-binding, conserved site APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 SMART SM00100 13 138 3.1E-22 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 198 3.0E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 198 213 3.0E-11 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 SMART SM00419 176 224 3.4E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 Pfam PF00325 Bacterial regulatory proteins, crp family 182 213 2.3E-15 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 Gene3D G3DSA:2.60.120.10 26 154 1.6E-40 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 SUPERFAMILY SSF46785 155 223 2.24E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_2012 c86b7ba7c48d3dd448c8c76e256ea386 226 SUPERFAMILY SSF51206 25 153 2.75E-32 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APJL_1743 13abb3a5747de291b11bd98879f13063 154 SUPERFAMILY SSF56420 1 149 4.58E-57 T 11-10-2018 IPR036821 Peptide deformylase superfamily APJL_1743 13abb3a5747de291b11bd98879f13063 154 Pfam PF01327 Polypeptide deformylase 2 136 2.8E-48 T 11-10-2018 IPR023635 Peptide deformylase APJL_1743 13abb3a5747de291b11bd98879f13063 154 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 2 144 5.7E-59 T 11-10-2018 IPR023635 Peptide deformylase APJL_1743 13abb3a5747de291b11bd98879f13063 154 PRINTS PR01576 Peptide deformylase signature 85 103 2.1E-38 T 11-10-2018 IPR023635 Peptide deformylase APJL_1743 13abb3a5747de291b11bd98879f13063 154 PRINTS PR01576 Peptide deformylase signature 73 84 2.1E-38 T 11-10-2018 IPR023635 Peptide deformylase APJL_1743 13abb3a5747de291b11bd98879f13063 154 PRINTS PR01576 Peptide deformylase signature 104 133 2.1E-38 T 11-10-2018 IPR023635 Peptide deformylase APJL_1743 13abb3a5747de291b11bd98879f13063 154 PRINTS PR01576 Peptide deformylase signature 17 46 2.1E-38 T 11-10-2018 IPR023635 Peptide deformylase APJL_1743 13abb3a5747de291b11bd98879f13063 154 Gene3D G3DSA:3.90.45.10 1 153 4.9E-63 T 11-10-2018 IPR036821 Peptide deformylase superfamily APJL_1743 13abb3a5747de291b11bd98879f13063 154 PIRSF PIRSF004749 1 154 6.2E-55 T 11-10-2018 IPR023635 Peptide deformylase APJL_1743 13abb3a5747de291b11bd98879f13063 154 Hamap MF_00163 Peptide deformylase [def]. 1 146 26.826 T 11-10-2018 IPR023635 Peptide deformylase APJL_0007 8a70bcd54060f904e7dbfa44e9224330 271 Gene3D G3DSA:2.40.160.10 26 270 2.9E-28 T 11-10-2018 IPR023614 Porin domain superfamily APJL_0007 8a70bcd54060f904e7dbfa44e9224330 271 Pfam PF13609 Gram-negative porin 4 267 1.6E-21 T 11-10-2018 APJL_0007 8a70bcd54060f904e7dbfa44e9224330 271 SUPERFAMILY SSF56935 29 267 7.02E-28 T 11-10-2018 APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 Pfam PF02436 Conserved carboxylase domain 295 498 4.0E-54 T 11-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 Gene3D G3DSA:3.20.20.70 1 467 9.0E-171 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 556 573 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 Pfam PF00364 Biotin-requiring enzyme 533 599 2.0E-17 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 Pfam PF00682 HMGL-like 7 273 2.0E-67 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 SUPERFAMILY SSF51230 523 599 3.53E-21 T 11-10-2018 IPR011053 Single hybrid motif APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 SUPERFAMILY SSF51569 4 303 1.78E-91 T 11-10-2018 APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 Gene3D G3DSA:2.40.50.100 532 599 7.2E-23 T 11-10-2018 APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 10 596 8.3E-291 T 11-10-2018 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 APJL_1394 1e6feafd663d0d8d79eaddaa0f8a4c14 600 SUPERFAMILY SSF89000 300 465 6.28E-47 T 11-10-2018 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 Hamap MF_00551 Uridine kinase [udk]. 7 215 39.099 T 11-10-2018 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 12 201 9.5E-45 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 SUPERFAMILY SSF52540 11 207 1.64E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 Gene3D G3DSA:3.40.50.300 6 217 2.1E-62 T 11-10-2018 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 PRINTS PR00988 Uridine kinase signature 181 194 8.7E-37 T 11-10-2018 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 PRINTS PR00988 Uridine kinase signature 10 27 8.7E-37 T 11-10-2018 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 PRINTS PR00988 Uridine kinase signature 89 104 8.7E-37 T 11-10-2018 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 PRINTS PR00988 Uridine kinase signature 159 170 8.7E-37 T 11-10-2018 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 PRINTS PR00988 Uridine kinase signature 145 155 8.7E-37 T 11-10-2018 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 PRINTS PR00988 Uridine kinase signature 44 55 8.7E-37 T 11-10-2018 APJL_0842 85c9affa053a277ef1c27c8c0037c776 217 TIGRFAM TIGR00235 udk: uridine kinase 7 214 5.5E-90 T 11-10-2018 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193|Reactome: R-HSA-73614 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 214 398 5.2E-83 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 Pfam PF00925 GTP cyclohydrolase II 213 374 2.0E-70 T 11-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 6 201 4.8E-76 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 SUPERFAMILY SSF55821 3 205 1.69E-82 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 Gene3D G3DSA:3.40.50.10990 211 379 4.3E-75 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 PIRSF PIRSF001259 4 401 1.9E-171 T 11-10-2018 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 4 205 37.703 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 Gene3D G3DSA:3.90.870.10 4 210 4.0E-85 T 11-10-2018 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 SUPERFAMILY SSF142695 206 378 5.62E-68 T 11-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 10 200 1.7E-82 T 11-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 206 401 42.427 T 11-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 APJL_0404 29d3ae286ab2c3244d3fef93bde8da89 401 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 5 397 50.874 T 11-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 APJL_0196 27c278b70b81429eec75532b7862753d 855 Gene3D G3DSA:1.10.3810.10 49 243 1.7E-76 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0196 27c278b70b81429eec75532b7862753d 855 Pfam PF00912 Transglycosylase 55 227 7.3E-63 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0196 27c278b70b81429eec75532b7862753d 855 Gene3D G3DSA:3.40.710.10 651 827 2.2E-22 T 11-10-2018 APJL_0196 27c278b70b81429eec75532b7862753d 855 Gene3D G3DSA:3.40.710.10 251 320 3.6E-6 T 11-10-2018 APJL_0196 27c278b70b81429eec75532b7862753d 855 Gene3D G3DSA:3.40.710.10 383 596 2.1E-66 T 11-10-2018 APJL_0196 27c278b70b81429eec75532b7862753d 855 SUPERFAMILY SSF56601 209 820 1.63E-106 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APJL_0196 27c278b70b81429eec75532b7862753d 855 Pfam PF17092 Penicillin-binding protein OB-like domain 315 409 1.5E-11 T 11-10-2018 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0196 27c278b70b81429eec75532b7862753d 855 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 774 2.8E-166 T 11-10-2018 APJL_0196 27c278b70b81429eec75532b7862753d 855 Pfam PF00905 Penicillin binding protein transpeptidase domain 413 584 2.5E-21 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APJL_0196 27c278b70b81429eec75532b7862753d 855 SUPERFAMILY SSF53955 43 252 4.78E-75 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APJL_2068 70d4e51e9d1b207c0d3d847cc56fb218 285 Gene3D G3DSA:3.30.470.20 98 241 6.1E-60 T 11-10-2018 APJL_2068 70d4e51e9d1b207c0d3d847cc56fb218 285 Pfam PF01259 SAICAR synthetase 7 261 1.9E-104 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_2068 70d4e51e9d1b207c0d3d847cc56fb218 285 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 5 285 26.565 T 11-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_2068 70d4e51e9d1b207c0d3d847cc56fb218 285 Gene3D G3DSA:3.30.200.20 1 96 8.6E-33 T 11-10-2018 APJL_2068 70d4e51e9d1b207c0d3d847cc56fb218 285 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 1 285 5.5E-104 T 11-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 APJL_2068 70d4e51e9d1b207c0d3d847cc56fb218 285 ProSitePatterns PS01057 SAICAR synthetase signature 1. 98 112 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_2068 70d4e51e9d1b207c0d3d847cc56fb218 285 SUPERFAMILY SSF56104 4 284 5.89E-104 T 11-10-2018 APJL_2068 70d4e51e9d1b207c0d3d847cc56fb218 285 ProSitePatterns PS01058 SAICAR synthetase signature 2. 197 205 - T 11-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_2084 fa18bf90a0dece7b7e1241bca93781a9 478 Gene3D G3DSA:2.115.10.20 4 355 7.6E-75 T 11-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily APJL_2084 fa18bf90a0dece7b7e1241bca93781a9 478 TIGRFAM TIGR01322 scrB_fam: sucrose-6-phosphate hydrolase 26 450 5.5E-112 T 11-10-2018 IPR006232 Sucrose-6-phosphate hydrolase GO:0004564|GO:0005737|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 APJL_2084 fa18bf90a0dece7b7e1241bca93781a9 478 SMART SM00640 38 440 3.7E-92 T 11-10-2018 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 APJL_2084 fa18bf90a0dece7b7e1241bca93781a9 478 SUPERFAMILY SSF49899 355 457 5.78E-20 T 11-10-2018 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily APJL_2084 fa18bf90a0dece7b7e1241bca93781a9 478 Pfam PF08244 Glycosyl hydrolases family 32 C terminal 342 453 5.9E-12 T 11-10-2018 IPR013189 Glycosyl hydrolase family 32, C-terminal APJL_2084 fa18bf90a0dece7b7e1241bca93781a9 478 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 38 337 6.6E-79 T 11-10-2018 IPR013148 Glycosyl hydrolase family 32, N-terminal APJL_2084 fa18bf90a0dece7b7e1241bca93781a9 478 SUPERFAMILY SSF75005 30 338 1.17E-81 T 11-10-2018 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily APJL_2084 fa18bf90a0dece7b7e1241bca93781a9 478 Gene3D G3DSA:2.60.120.560 366 459 5.1E-7 T 11-10-2018 APJL_0566 f3ccaf9aea66d12f332a6340281ae630 191 Pfam PF01174 SNO glutamine amidotransferase family 11 189 2.3E-64 T 11-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_0566 f3ccaf9aea66d12f332a6340281ae630 191 Gene3D G3DSA:3.40.50.880 4 191 4.7E-67 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_0566 f3ccaf9aea66d12f332a6340281ae630 191 Hamap MF_01615 Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 9 188 35.813 T 11-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_0566 f3ccaf9aea66d12f332a6340281ae630 191 SUPERFAMILY SSF52317 7 189 5.3E-49 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_0566 f3ccaf9aea66d12f332a6340281ae630 191 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 9 187 9.3E-69 T 11-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_0566 f3ccaf9aea66d12f332a6340281ae630 191 PIRSF PIRSF005639 3 191 2.6E-69 T 11-10-2018 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_0566 f3ccaf9aea66d12f332a6340281ae630 191 ProSitePatterns PS01236 PdxT/SNO family family signature. 46 56 - T 11-10-2018 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_1478 66b797247ea2cfd3aac813c06e4f75dc 197 Gene3D G3DSA:2.40.10.330 71 121 2.0E-55 T 11-10-2018 APJL_1478 66b797247ea2cfd3aac813c06e4f75dc 197 Gene3D G3DSA:3.10.50.40 3 153 2.0E-55 T 11-10-2018 APJL_1478 66b797247ea2cfd3aac813c06e4f75dc 197 SUPERFAMILY SSF54534 5 139 2.95E-32 T 11-10-2018 APJL_1478 66b797247ea2cfd3aac813c06e4f75dc 197 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 10 136 4.3E-10 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 301 32.61 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 Gene3D G3DSA:1.20.58.410 1 52 2.1E-11 T 11-10-2018 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 Gene3D G3DSA:3.30.70.1660 66 294 2.2E-96 T 11-10-2018 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 Pfam PF03462 PCRF domain 2 155 3.1E-49 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 181 197 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 Gene3D G3DSA:3.30.160.20 162 257 2.2E-96 T 11-10-2018 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 SUPERFAMILY SSF75620 2 300 2.62E-126 T 11-10-2018 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 Pfam PF00472 RF-1 domain 164 273 5.3E-42 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 299 2.8E-150 T 11-10-2018 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 APJL_0341 96ae8bb152d072bb1b209d77e3fd220a 301 SMART SM00937 21 131 8.6E-56 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 APJL_1698 e0036d9ef8dea64c7d3c0eeae3f6f654 366 Gene3D G3DSA:3.40.50.2300 102 344 4.7E-67 T 11-10-2018 APJL_1698 e0036d9ef8dea64c7d3c0eeae3f6f654 366 Pfam PF00356 Bacterial regulatory proteins, lacI family 42 87 4.8E-13 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_1698 e0036d9ef8dea64c7d3c0eeae3f6f654 366 Pfam PF13377 Periplasmic binding protein-like domain 207 365 1.7E-24 T 11-10-2018 APJL_1698 e0036d9ef8dea64c7d3c0eeae3f6f654 366 SUPERFAMILY SSF47413 39 98 7.67E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_1698 e0036d9ef8dea64c7d3c0eeae3f6f654 366 SUPERFAMILY SSF53822 97 350 4.71E-57 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_1698 e0036d9ef8dea64c7d3c0eeae3f6f654 366 Gene3D G3DSA:1.10.260.40 33 97 2.3E-14 T 11-10-2018 APJL_1698 e0036d9ef8dea64c7d3c0eeae3f6f654 366 Gene3D G3DSA:3.40.50.2300 196 328 4.7E-67 T 11-10-2018 APJL_1698 e0036d9ef8dea64c7d3c0eeae3f6f654 366 SMART SM00354 40 110 9.5E-24 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 7 441 7.7E-184 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 SMART SM00729 137 366 4.2E-53 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 Pfam PF04055 Radical SAM superfamily 143 324 1.7E-28 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 Gene3D G3DSA:3.80.30.20 135 380 1.0E-72 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 Pfam PF00919 Uncharacterized protein family UPF0004 8 91 1.4E-20 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 SUPERFAMILY SSF102114 122 371 3.14E-51 T 11-10-2018 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 Gene3D G3DSA:2.40.50.140 381 443 1.5E-22 T 11-10-2018 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 8 441 4.3E-106 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 5 443 60.531 T 11-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 Gene3D G3DSA:3.40.50.12160 6 129 1.1E-28 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily APJL_1669 0a3d5b1c4efc7c523ae8cc43da2563dd 443 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 141 161 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Gene3D G3DSA:3.40.50.880 984 1297 1.5E-131 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 6 1296 0.0 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Gene3D G3DSA:3.30.1330.10 216 420 2.1E-44 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 SMART SM01211 1042 1297 3.8E-149 T 11-10-2018 APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 SUPERFAMILY SSF82697 3 153 1.36E-49 T 11-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 SUPERFAMILY SSF52317 1039 1296 2.02E-93 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Gene3D G3DSA:3.90.650.10 810 983 3.8E-29 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Gene3D G3DSA:1.10.8.750 155 215 1.3E-27 T 11-10-2018 APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 3 1298 21.142 T 11-10-2018 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 SUPERFAMILY SSF55326 223 429 3.45E-63 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Gene3D G3DSA:3.30.1330.10 614 809 1.6E-25 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Pfam PF02769 AIR synthase related protein, C-terminal domain 839 968 1.7E-13 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Pfam PF02769 AIR synthase related protein, C-terminal domain 433 590 6.0E-29 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 SUPERFAMILY SSF55326 623 817 8.89E-68 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 SUPERFAMILY SSF109736 157 222 2.75E-22 T 11-10-2018 APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Gene3D G3DSA:3.90.650.10 421 607 5.8E-61 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 SUPERFAMILY SSF56042 828 1035 2.24E-53 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1042 1294 7.5E-100 T 11-10-2018 APJL_1714 66e05a3fdfdc845d73f2ee561ab06a74 1298 SUPERFAMILY SSF56042 433 616 2.39E-54 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 7 313 1.1E-131 T 11-10-2018 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 SUPERFAMILY SSF53613 12 311 2.81E-59 T 11-10-2018 IPR029056 Ribokinase-like APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 343 409 6.1E-18 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 Pfam PF00294 pfkB family carbohydrate kinase 12 307 2.7E-51 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 Pfam PF01467 Cytidylyltransferase-like 346 470 7.4E-16 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 75 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 5 475 43.552 T 11-10-2018 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 473 1.5E-65 T 11-10-2018 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00540+2.7.7.70+2.7.1.167 APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 SUPERFAMILY SSF52374 341 472 2.64E-23 T 11-10-2018 APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 Gene3D G3DSA:3.40.50.620 325 476 1.3E-39 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0423 86edd10a1a18ce319f494db8b48b09c6 476 Gene3D G3DSA:3.40.1190.20 3 310 2.8E-111 T 11-10-2018 IPR029056 Ribokinase-like APJL_0274 6d4ba176a2b2bac4529e16c4a538fe51 182 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 10 179 36.666 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 APJL_0274 6d4ba176a2b2bac4529e16c4a538fe51 182 SUPERFAMILY SSF53271 12 178 1.19E-51 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_0274 6d4ba176a2b2bac4529e16c4a538fe51 182 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 10 178 2.5E-68 T 11-10-2018 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-6798695|Reactome: R-HSA-74217 APJL_0274 6d4ba176a2b2bac4529e16c4a538fe51 182 Pfam PF00156 Phosphoribosyl transferase domain 46 155 1.3E-14 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APJL_0274 6d4ba176a2b2bac4529e16c4a538fe51 182 Gene3D G3DSA:3.40.50.2020 1 182 6.8E-65 T 11-10-2018 APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 Gene3D G3DSA:2.40.30.10 167 285 2.0E-25 T 11-10-2018 APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 Pfam PF09107 Elongation factor SelB, winged helix 560 605 7.8E-15 T 11-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 SUPERFAMILY SSF50465 270 353 7.19E-8 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 Gene3D G3DSA:1.10.10.10 547 607 3.4E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 156 4.4E-13 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 SUPERFAMILY SSF50447 167 253 1.94E-18 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 607 2.8E-196 T 11-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 Gene3D G3DSA:1.10.10.10 485 545 2.9E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 Pfam PF09106 Elongation factor SelB, winged helix 423 478 6.4E-13 T 11-10-2018 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 SUPERFAMILY SSF46785 551 607 2.3E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 Pfam PF00009 Elongation factor Tu GTP binding domain 3 161 1.7E-30 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 Pfam PF03144 Elongation factor Tu domain 2 186 252 2.2E-7 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 SUPERFAMILY SSF46785 413 483 1.22E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 SUPERFAMILY SSF52540 2 186 1.25E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1589 75d1c2109f34a0ff484b48d43e749ec5 611 Gene3D G3DSA:3.40.50.300 1 164 1.5E-44 T 11-10-2018 APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 Gene3D G3DSA:3.40.50.300 8 234 6.0E-57 T 11-10-2018 APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 SMART SM00382 23 206 3.2E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 Gene3D G3DSA:2.40.50.140 253 350 7.5E-12 T 11-10-2018 APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 Pfam PF00005 ABC transporter 17 156 2.3E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 Gene3D G3DSA:2.40.50.100 277 349 7.5E-12 T 11-10-2018 APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 SUPERFAMILY SSF50331 246 350 5.1E-19 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 2 351 3.2E-130 T 11-10-2018 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 SUPERFAMILY SSF52540 5 226 9.69E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0268 7dd8e9433d8f7cd5e24612ed08889dd0 351 Pfam PF03459 TOBE domain 291 351 1.1E-15 T 11-10-2018 IPR005116 Transport-associated OB, type 1 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 50 188 5.4E-37 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 212 313 3.2E-25 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 SUPERFAMILY SSF53738 41 231 1.65E-39 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 SUPERFAMILY SSF55957 433 551 2.62E-19 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 Gene3D G3DSA:3.30.310.50 445 539 1.8E-8 T 11-10-2018 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 Gene3D G3DSA:3.40.120.10 209 320 2.9E-22 T 11-10-2018 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 Gene3D G3DSA:3.40.120.10 41 195 2.2E-43 T 11-10-2018 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 SUPERFAMILY SSF53738 209 313 4.71E-22 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 476 535 1.1E-13 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 323 434 8.4E-16 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 Gene3D G3DSA:3.40.120.10 321 440 2.8E-30 T 11-10-2018 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 145 154 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0584 e2b9798268d8934be06727cb85532f3f 552 SUPERFAMILY SSF53738 302 439 1.18E-25 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1159 780001a80c758cdd937e3cc2dd3df640 184 Gene3D G3DSA:3.90.870.10 1 182 1.7E-49 T 11-10-2018 APJL_1159 780001a80c758cdd937e3cc2dd3df640 184 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 1 182 34.123 T 11-10-2018 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 APJL_1159 780001a80c758cdd937e3cc2dd3df640 184 SUPERFAMILY SSF55821 2 181 1.65E-44 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APJL_1159 780001a80c758cdd937e3cc2dd3df640 184 Pfam PF01300 Telomere recombination 10 184 3.9E-33 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 APJL_1042 ac1c840c2d06965510fc2d89add38f45 168 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 6 154 2.0E-56 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APJL_1042 ac1c840c2d06965510fc2d89add38f45 168 Pfam PF01625 Peptide methionine sulfoxide reductase 6 155 3.7E-61 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APJL_1042 ac1c840c2d06965510fc2d89add38f45 168 SUPERFAMILY SSF55068 2 157 8.89E-64 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APJL_1042 ac1c840c2d06965510fc2d89add38f45 168 Gene3D G3DSA:3.30.1060.10 2 167 2.0E-63 T 11-10-2018 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APJL_1042 ac1c840c2d06965510fc2d89add38f45 168 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 4 160 36.547 T 11-10-2018 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 APJL_1641 d026b2d53661cf870bef82a0a40b8d51 96 Pfam PF04175 Protein of unknown function (DUF406) 5 94 4.9E-35 T 11-10-2018 IPR005272 Conserved hypothetical protein CHP00743 APJL_1641 d026b2d53661cf870bef82a0a40b8d51 96 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 2 94 1.1E-38 T 11-10-2018 IPR005272 Conserved hypothetical protein CHP00743 APJL_1641 d026b2d53661cf870bef82a0a40b8d51 96 Gene3D G3DSA:3.30.70.860 23 96 2.6E-26 T 11-10-2018 IPR035571 UPF0234-like, C-terminal APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 5.8E-33 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 SUPERFAMILY SSF109604 6 190 1.1E-76 T 11-10-2018 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 SUPERFAMILY SSF81271 375 447 1.61E-20 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 SUPERFAMILY SSF81301 181 392 8.17E-59 T 11-10-2018 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 Gene3D G3DSA:3.10.20.30 381 454 2.2E-28 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 Pfam PF13291 ACT domain 494 566 5.5E-14 T 11-10-2018 IPR002912 ACT domain APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 Gene3D G3DSA:3.30.70.260 493 568 5.9E-14 T 11-10-2018 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 SMART SM00471 41 153 2.9E-11 T 11-10-2018 IPR003607 HD/PDEase domain APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 Gene3D G3DSA:3.30.460.10 193 325 5.7E-43 T 11-10-2018 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 Gene3D G3DSA:1.10.3210.10 5 190 5.4E-82 T 11-10-2018 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 SMART SM00954 235 345 1.7E-56 T 11-10-2018 IPR007685 RelA/SpoT GO:0015969 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 SUPERFAMILY SSF55021 493 565 7.05E-9 T 11-10-2018 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 Pfam PF02824 TGS domain 388 447 6.3E-20 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 Pfam PF13328 HD domain 26 175 5.3E-54 T 11-10-2018 IPR003607 HD/PDEase domain APJL_1861 7f273e25a6b8445228ea5a11a41e82bc 568 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 486 1.5E-213 T 11-10-2018 IPR004811 RelA/SpoT family GO:0015969 APJL_0664 9be4d02334ded807e5a3b1ed48d2471c 396 TIGRFAM TIGR01412 tat_substr_1: Tat-translocated enzyme 5 394 2.0E-140 T 11-10-2018 IPR006313 Deferrochelatase/peroxidase EfeB GO:0004601|GO:0015684|GO:0020037|GO:0033212 APJL_0664 9be4d02334ded807e5a3b1ed48d2471c 396 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 6 27 3.1E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APJL_0664 9be4d02334ded807e5a3b1ed48d2471c 396 Pfam PF04261 Dyp-type peroxidase family 49 382 1.0E-102 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 APJL_0664 9be4d02334ded807e5a3b1ed48d2471c 396 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 49 382 1.1E-86 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 APJL_0664 9be4d02334ded807e5a3b1ed48d2471c 396 SUPERFAMILY SSF54909 44 385 5.18E-84 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 SUPERFAMILY SSF52540 337 554 4.32E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 Gene3D G3DSA:1.20.1560.10 1 312 3.5E-39 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 ProSitePatterns PS00211 ABC transporters family signature. 461 475 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 Gene3D G3DSA:3.40.50.300 323 557 6.1E-69 T 11-10-2018 APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 Pfam PF00664 ABC transporter transmembrane region 4 270 1.6E-30 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 SUPERFAMILY SSF90123 2 306 3.4E-45 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 SMART SM00382 352 535 5.2E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 Pfam PF00005 ABC transporter 344 489 1.8E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0834 bd9bbb3a18e29c417e803022636439e1 557 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 3 531 3.1E-172 T 11-10-2018 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 Pfam PF08442 ATP-grasp domain 2 202 1.9E-77 T 11-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 11-10-2018 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 Gene3D G3DSA:3.40.50.261 240 388 4.1E-57 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 7.1E-174 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 Pfam PF00549 CoA-ligase 262 381 3.9E-25 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 PIRSF PIRSF001554 1 388 1.5E-150 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 SUPERFAMILY SSF52210 241 384 1.05E-52 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 Gene3D G3DSA:3.30.470.20 1 234 5.9E-89 T 11-10-2018 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 SUPERFAMILY SSF56059 1 238 1.46E-76 T 11-10-2018 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 Hamap MF_00558 Succinate--CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 42.269 T 11-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_0479 7d659bc30388ca8d91cf0252a2c9c84e 388 Gene3D G3DSA:3.30.1490.20 21 104 5.9E-89 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_0766 f5e38fa097392b828f91567196ee6bda 309 Hamap MF_00973 Gluconeogenesis factor. 16 307 31.373 T 11-10-2018 IPR010119 Gluconeogenesis factor APJL_0766 f5e38fa097392b828f91567196ee6bda 309 SUPERFAMILY SSF142338 19 301 3.66E-83 T 11-10-2018 APJL_0766 f5e38fa097392b828f91567196ee6bda 309 Pfam PF01933 Uncharacterised protein family UPF0052 20 299 5.9E-77 T 11-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 APJL_0766 f5e38fa097392b828f91567196ee6bda 309 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 20 268 1.5E-94 T 11-10-2018 IPR010119 Gluconeogenesis factor APJL_0766 f5e38fa097392b828f91567196ee6bda 309 Gene3D G3DSA:3.40.50.12300 16 309 1.4E-80 T 11-10-2018 IPR038136 Gluconeogenesis factor superfamily APJL_0156 04d07a520548351b7cfe63f367be95c9 409 SUPERFAMILY SSF63380 107 274 1.55E-37 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APJL_0156 04d07a520548351b7cfe63f367be95c9 409 Gene3D G3DSA:2.40.30.10 128 266 9.1E-54 T 11-10-2018 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 PIRSF PIRSF000044 2 409 2.9E-227 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 6 409 1.7E-229 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 SUPERFAMILY SSF54292 37 126 1.1E-21 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 Pfam PF00970 Oxidoreductase FAD-binding domain 206 268 9.7E-11 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 SUPERFAMILY SSF52343 257 404 6.55E-37 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APJL_0156 04d07a520548351b7cfe63f367be95c9 409 Pfam PF00175 Oxidoreductase NAD-binding domain 279 388 7.6E-19 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 375 383 6.6E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 211 218 6.6E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 316 327 6.6E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 278 297 6.6E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 304 313 6.6E-7 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 3 409 63.39 T 11-10-2018 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 46 116 1.7E-10 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APJL_0156 04d07a520548351b7cfe63f367be95c9 409 Gene3D G3DSA:3.40.50.80 277 394 6.0E-32 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APJL_0156 04d07a520548351b7cfe63f367be95c9 409 Gene3D G3DSA:3.10.20.30 36 127 2.3E-31 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 190 684 8.2E-86 T 11-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 SUPERFAMILY SSF81653 225 319 9.15E-20 T 11-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 SUPERFAMILY SSF81665 170 689 4.05E-16 T 11-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 Pfam PF00702 haloacid dehalogenase-like hydrolase 415 619 6.0E-44 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 421 427 - T 11-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 136 714 6.7E-172 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 Gene3D G3DSA:3.40.50.1000 400 656 1.9E-81 T 11-10-2018 IPR023214 HAD superfamily APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 Pfam PF00403 Heavy-metal-associated domain 8 63 1.2E-13 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 Gene3D G3DSA:3.40.1110.10 430 537 1.9E-81 T 11-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00943 Copper-transporting ATPase signature 140 159 4.9E-12 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00943 Copper-transporting ATPase signature 188 207 4.9E-12 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00943 Copper-transporting ATPase signature 678 692 4.9E-12 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00943 Copper-transporting ATPase signature 45 65 4.9E-12 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00943 Copper-transporting ATPase signature 342 356 4.9E-12 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00943 Copper-transporting ATPase signature 208 226 4.9E-12 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00943 Copper-transporting ATPase signature 582 599 4.9E-12 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 Gene3D G3DSA:3.30.70.100 5 68 1.5E-20 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 SUPERFAMILY SSF56784 417 711 1.53E-54 T 11-10-2018 IPR036412 HAD-like superfamily APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 SUPERFAMILY SSF55008 3 72 1.96E-19 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 155 714 9.7E-169 T 11-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 Pfam PF00122 E1-E2 ATPase 219 398 1.2E-46 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 184 716 1.1E-110 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 ProSitePatterns PS01047 Heavy-metal-associated domain. 9 38 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 Gene3D G3DSA:2.70.150.20 212 324 1.4E-27 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 628 640 1.7E-25 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 552 562 1.7E-25 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 419 433 1.7E-25 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 269 283 1.7E-25 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 605 624 1.7E-25 T 11-10-2018 APJL_1276 f406c5a35dd3162ceb5e8d23bf979bcd 716 ProSitePatterns PS01229 Hypothetical cof family signature 2. 605 627 - T 11-10-2018 APJL_0888 1f726fd9b0ee1f449f7744b9785f7884 212 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 196 28.662 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 APJL_0888 1f726fd9b0ee1f449f7744b9785f7884 212 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 187 1.1E-66 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 APJL_0888 1f726fd9b0ee1f449f7744b9785f7884 212 Gene3D G3DSA:3.40.50.300 1 211 3.4E-69 T 11-10-2018 APJL_0888 1f726fd9b0ee1f449f7744b9785f7884 212 SUPERFAMILY SSF52540 1 192 3.83E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0888 1f726fd9b0ee1f449f7744b9785f7884 212 Pfam PF01121 Dephospho-CoA kinase 3 176 5.4E-70 T 11-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 APJL_1321 8aebf44c63b36552b198f1a68ab1d9e9 229 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 228 2.4E-62 T 11-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 APJL_1321 8aebf44c63b36552b198f1a68ab1d9e9 229 Pfam PF01177 Asp/Glu/Hydantoin racemase 7 220 4.7E-51 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1321 8aebf44c63b36552b198f1a68ab1d9e9 229 Gene3D G3DSA:3.40.50.1860 104 214 5.7E-77 T 11-10-2018 APJL_1321 8aebf44c63b36552b198f1a68ab1d9e9 229 SUPERFAMILY SSF53681 1 116 7.85E-34 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1321 8aebf44c63b36552b198f1a68ab1d9e9 229 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 192 202 - T 11-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1321 8aebf44c63b36552b198f1a68ab1d9e9 229 SUPERFAMILY SSF53681 119 228 5.89E-30 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1321 8aebf44c63b36552b198f1a68ab1d9e9 229 Gene3D G3DSA:3.40.50.1860 4 222 5.7E-77 T 11-10-2018 APJL_0793 5722e2d3883d8440fc16d8585177f3d9 295 Gene3D G3DSA:1.10.10.10 1 90 4.4E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0793 5722e2d3883d8440fc16d8585177f3d9 295 SUPERFAMILY SSF46785 1 84 9.19E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0793 5722e2d3883d8440fc16d8585177f3d9 295 Gene3D G3DSA:3.40.190.10 160 257 1.2E-46 T 11-10-2018 APJL_0793 5722e2d3883d8440fc16d8585177f3d9 295 Pfam PF03466 LysR substrate binding domain 87 283 1.0E-33 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_0793 5722e2d3883d8440fc16d8585177f3d9 295 SUPERFAMILY SSF53850 87 285 2.44E-39 T 11-10-2018 APJL_0793 5722e2d3883d8440fc16d8585177f3d9 295 Gene3D G3DSA:3.40.190.10 91 282 1.2E-46 T 11-10-2018 APJL_0793 5722e2d3883d8440fc16d8585177f3d9 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.6E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0854 24319cae7686a9ffc0d92ee5cc133c81 279 Gene3D G3DSA:3.30.1130.10 19 137 1.6E-45 T 11-10-2018 APJL_0854 24319cae7686a9ffc0d92ee5cc133c81 279 Pfam PF14489 QueF-like protein 193 266 4.7E-26 T 11-10-2018 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APJL_0854 24319cae7686a9ffc0d92ee5cc133c81 279 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 19 129 1.4E-48 T 11-10-2018 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APJL_0854 24319cae7686a9ffc0d92ee5cc133c81 279 SUPERFAMILY SSF55620 183 263 5.56E-10 T 11-10-2018 APJL_0854 24319cae7686a9ffc0d92ee5cc133c81 279 TIGRFAM TIGR03138 QueF: queuine synthase 8 279 4.9E-125 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APJL_0854 24319cae7686a9ffc0d92ee5cc133c81 279 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 279 159.071 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APJL_0854 24319cae7686a9ffc0d92ee5cc133c81 279 PIRSF PIRSF004750 4 279 3.8E-129 T 11-10-2018 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 APJL_0854 24319cae7686a9ffc0d92ee5cc133c81 279 Gene3D G3DSA:3.30.1130.10 142 279 1.2E-60 T 11-10-2018 APJL_0881 ac36f730faca1b670285235e52b5ae9f 422 SUPERFAMILY SSF53187 5 421 3.77E-58 T 11-10-2018 APJL_0881 ac36f730faca1b670285235e52b5ae9f 422 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 8 409 2.8E-90 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APJL_0881 ac36f730faca1b670285235e52b5ae9f 422 SUPERFAMILY SSF55031 221 326 5.89E-26 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APJL_0881 ac36f730faca1b670285235e52b5ae9f 422 Pfam PF07687 Peptidase dimerisation domain 223 310 4.9E-12 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APJL_0881 ac36f730faca1b670285235e52b5ae9f 422 Gene3D G3DSA:3.40.630.10 285 422 1.5E-13 T 11-10-2018 APJL_0881 ac36f730faca1b670285235e52b5ae9f 422 Gene3D G3DSA:3.40.630.10 4 284 6.2E-73 T 11-10-2018 APJL_0881 ac36f730faca1b670285235e52b5ae9f 422 PIRSF PIRSF005962 2 422 1.3E-104 T 11-10-2018 IPR017439 Amidohydrolase GO:0016787 APJL_0881 ac36f730faca1b670285235e52b5ae9f 422 Pfam PF01546 Peptidase family M20/M25/M40 103 418 4.4E-22 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APJL_1908 049396367c03884c997c8771669eb98d 447 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APJL_1908 049396367c03884c997c8771669eb98d 447 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 8.5E-45 T 11-10-2018 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APJL_1908 049396367c03884c997c8771669eb98d 447 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 1.2E-246 T 11-10-2018 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 APJL_1908 049396367c03884c997c8771669eb98d 447 Gene3D G3DSA:3.40.50.20 1 85 4.1E-35 T 11-10-2018 APJL_1908 049396367c03884c997c8771669eb98d 447 SMART SM00878 336 441 4.3E-66 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APJL_1908 049396367c03884c997c8771669eb98d 447 Gene3D G3DSA:3.30.470.20 86 433 1.9E-157 T 11-10-2018 APJL_1908 049396367c03884c997c8771669eb98d 447 SUPERFAMILY SSF52440 1 113 1.58E-47 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APJL_1908 049396367c03884c997c8771669eb98d 447 SUPERFAMILY SSF51246 331 444 4.24E-44 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APJL_1908 049396367c03884c997c8771669eb98d 447 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 1.2E-84 T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APJL_1908 049396367c03884c997c8771669eb98d 447 SUPERFAMILY SSF56059 83 347 2.12E-69 T 11-10-2018 APJL_1908 049396367c03884c997c8771669eb98d 447 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 11-10-2018 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 APJL_1908 049396367c03884c997c8771669eb98d 447 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 8.1E-39 T 11-10-2018 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APJL_1908 049396367c03884c997c8771669eb98d 447 Gene3D G3DSA:3.30.1490.20 131 203 1.9E-157 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_1185 1c5f1f0aab20544b136d6f70afbefbbb 334 Pfam PF00591 Glycosyl transferase family, a/b domain 75 323 1.4E-93 T 11-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 APJL_1185 1c5f1f0aab20544b136d6f70afbefbbb 334 Gene3D G3DSA:3.40.1030.10 69 323 7.1E-114 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 APJL_1185 1c5f1f0aab20544b136d6f70afbefbbb 334 SUPERFAMILY SSF47648 1 69 1.44E-15 T 11-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 APJL_1185 1c5f1f0aab20544b136d6f70afbefbbb 334 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 333 37.252 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 APJL_1185 1c5f1f0aab20544b136d6f70afbefbbb 334 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 62 1.1E-13 T 11-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 APJL_1185 1c5f1f0aab20544b136d6f70afbefbbb 334 SUPERFAMILY SSF52418 72 332 7.98E-88 T 11-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 APJL_1185 1c5f1f0aab20544b136d6f70afbefbbb 334 Gene3D G3DSA:1.20.970.10 12 185 7.1E-114 T 11-10-2018 APJL_1185 1c5f1f0aab20544b136d6f70afbefbbb 334 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 332 5.8E-118 T 11-10-2018 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 APJL_1742 24a845da49cd08fad507ba8168554236 308 Gene3D G3DSA:3.40.50.720 3 302 3.8E-115 T 11-10-2018 APJL_1742 24a845da49cd08fad507ba8168554236 308 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 236 2.5E-45 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APJL_1742 24a845da49cd08fad507ba8168554236 308 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 308 46.057 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 APJL_1742 24a845da49cd08fad507ba8168554236 308 SUPERFAMILY SSF51735 1 306 3.94E-64 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1742 24a845da49cd08fad507ba8168554236 308 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 307 8.8E-132 T 11-10-2018 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 APJL_1742 24a845da49cd08fad507ba8168554236 308 Gene3D G3DSA:3.90.25.10 168 290 3.8E-115 T 11-10-2018 APJL_1291 52be87adc65c63d9c7e41572d1d97cbb 378 Pfam PF07724 AAA domain (Cdc48 subfamily) 75 273 3.4E-47 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APJL_1291 52be87adc65c63d9c7e41572d1d97cbb 378 SMART SM01086 280 377 3.2E-32 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APJL_1291 52be87adc65c63d9c7e41572d1d97cbb 378 Gene3D G3DSA:1.10.8.60 279 378 4.8E-36 T 11-10-2018 APJL_1291 52be87adc65c63d9c7e41572d1d97cbb 378 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 280 362 2.3E-16 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APJL_1291 52be87adc65c63d9c7e41572d1d97cbb 378 SMART SM00382 74 345 5.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1291 52be87adc65c63d9c7e41572d1d97cbb 378 Gene3D G3DSA:3.40.50.300 16 278 3.4E-108 T 11-10-2018 APJL_1291 52be87adc65c63d9c7e41572d1d97cbb 378 SUPERFAMILY SSF52540 20 355 1.89E-68 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1291 52be87adc65c63d9c7e41572d1d97cbb 378 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 13 377 9.4E-180 T 11-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 APJL_1462 e91d84e18175cf396439f7118881453e 89 Hamap MF_02200 Chaperone NapD [napD]. 12 89 16.84 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly APJL_1462 e91d84e18175cf396439f7118881453e 89 Gene3D G3DSA:3.30.70.920 12 82 5.8E-25 T 11-10-2018 APJL_1462 e91d84e18175cf396439f7118881453e 89 Pfam PF03927 NapD protein 12 88 7.6E-23 T 11-10-2018 IPR005623 Chaperone NapD, nitrate reductase assembly APJL_0029 dd61e22c917c456334ce1cf64d154f45 315 SUPERFAMILY SSF161098 93 294 2.62E-21 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0029 dd61e22c917c456334ce1cf64d154f45 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 309 1.5E-42 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0029 dd61e22c917c456334ce1cf64d154f45 315 Gene3D G3DSA:1.10.3720.10 91 304 2.7E-25 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1563 6b06e3c3f799b29397d7f3b0566eebf6 304 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 13 302 1.2E-139 T 11-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 APJL_1563 6b06e3c3f799b29397d7f3b0566eebf6 304 Gene3D G3DSA:3.40.50.10490 8 225 1.7E-84 T 11-10-2018 APJL_1563 6b06e3c3f799b29397d7f3b0566eebf6 304 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 9 302 42.805 T 11-10-2018 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00520+4.2.1.126 APJL_1563 6b06e3c3f799b29397d7f3b0566eebf6 304 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 192 209 - T 11-10-2018 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 APJL_1563 6b06e3c3f799b29397d7f3b0566eebf6 304 SUPERFAMILY SSF53697 12 256 1.51E-76 T 11-10-2018 APJL_1563 6b06e3c3f799b29397d7f3b0566eebf6 304 Pfam PF01380 SIS domain 135 217 1.9E-11 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APJL_1563 6b06e3c3f799b29397d7f3b0566eebf6 304 Gene3D G3DSA:1.10.8.1080 226 304 1.8E-28 T 11-10-2018 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 Gene3D G3DSA:2.30.40.20 14 71 8.3E-27 T 11-10-2018 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 Hamap MF_01113 DNA polymerase IV [dinB]. 4 354 36.584 T 11-10-2018 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 Pfam PF00817 impB/mucB/samB family 10 157 9.6E-51 T 11-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 SUPERFAMILY SSF100879 244 354 3.57E-19 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 SUPERFAMILY SSF56672 3 236 4.45E-96 T 11-10-2018 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 Pfam PF11798 IMS family HHH motif 170 200 3.2E-7 T 11-10-2018 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 Gene3D G3DSA:1.10.150.20 173 231 1.5E-18 T 11-10-2018 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 Gene3D G3DSA:3.30.70.270 72 172 1.2E-36 T 11-10-2018 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 Pfam PF11799 impB/mucB/samB family C-terminal domain 238 342 7.2E-7 T 11-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APJL_1058 5095074b0cf2c65f4a6de7bbbea71349 356 Gene3D G3DSA:3.30.1490.100 240 355 5.3E-23 T 11-10-2018 IPR036775 DNA polymerase, Y-family, little finger domain superfamily GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 APJL_1767 84a5e94cb4535b5f93478dcc9041ecd6 132 Hamap MF_00265 tRNA(fMet)-specific endonuclease VapC [vapC]. 4 130 11.71 T 11-10-2018 IPR022907 VapC family GO:0004540 APJL_1767 84a5e94cb4535b5f93478dcc9041ecd6 132 SMART SM00670 2 121 0.0027 T 11-10-2018 IPR002716 PIN domain APJL_1767 84a5e94cb4535b5f93478dcc9041ecd6 132 SUPERFAMILY SSF88723 1 131 2.64E-37 T 11-10-2018 IPR029060 PIN-like domain superfamily APJL_1767 84a5e94cb4535b5f93478dcc9041ecd6 132 Gene3D G3DSA:3.40.50.1010 1 132 7.5E-41 T 11-10-2018 APJL_1767 84a5e94cb4535b5f93478dcc9041ecd6 132 Pfam PF01850 PIN domain 4 124 5.4E-16 T 11-10-2018 IPR002716 PIN domain APJL_0279 b8b7b81630838b4a8e610e30429db071 163 Gene3D G3DSA:3.90.960.10 4 157 3.0E-43 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APJL_0279 b8b7b81630838b4a8e610e30429db071 163 SUPERFAMILY SSF55826 5 156 2.49E-38 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APJL_0279 b8b7b81630838b4a8e610e30429db071 163 Pfam PF04073 Aminoacyl-tRNA editing domain 27 149 3.0E-25 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APJL_1694 ebb2d8061f538d0f96a7c0c5106354a6 264 Pfam PF03609 PTS system sorbose-specific iic component 4 235 5.0E-78 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 APJL_1694 ebb2d8061f538d0f96a7c0c5106354a6 264 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 257 1.0E-106 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 Gene3D G3DSA:3.10.20.30 241 339 2.0E-19 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 289 297 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 Gene3D G3DSA:2.40.30.10 10 104 5.3E-21 T 11-10-2018 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 Pfam PF00970 Oxidoreductase FAD-binding domain 38 106 1.1E-9 T 11-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 Pfam PF00175 Oxidoreductase NAD-binding domain 118 220 9.1E-15 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 SUPERFAMILY SSF52343 97 237 1.31E-31 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 SUPERFAMILY SSF63380 12 106 1.24E-22 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 57 64 1.0E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 154 165 1.0E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 117 136 1.0E-5 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 258 332 1.4E-11 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 PRINTS PR00406 Cytochrome B5 reductase signature 117 136 2.9E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 PRINTS PR00406 Cytochrome B5 reductase signature 154 165 2.9E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 PRINTS PR00406 Cytochrome B5 reductase signature 94 108 2.9E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 PRINTS PR00406 Cytochrome B5 reductase signature 207 215 2.9E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 PRINTS PR00406 Cytochrome B5 reductase signature 57 64 2.9E-8 T 11-10-2018 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 Reactome: R-HSA-1237044 APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 Gene3D G3DSA:3.40.50.80 111 240 1.2E-30 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APJL_1575 8aa0feffffbe60963cdc23e11fb014dd 339 SUPERFAMILY SSF54292 231 339 3.8E-22 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APJL_0810 d50627fac59cd9836dedffb29abe9d9b 658 Gene3D G3DSA:3.40.720.10 284 570 1.6E-140 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APJL_0810 d50627fac59cd9836dedffb29abe9d9b 658 SUPERFAMILY SSF53649 291 606 7.98E-69 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APJL_0810 d50627fac59cd9836dedffb29abe9d9b 658 PIRSF PIRSF005091 12 656 2.2E-117 T 11-10-2018 IPR012160 Lipoteichoic acid synthase-like APJL_0810 d50627fac59cd9836dedffb29abe9d9b 658 Gene3D G3DSA:3.30.1120.80 283 650 1.6E-140 T 11-10-2018 APJL_0810 d50627fac59cd9836dedffb29abe9d9b 658 Pfam PF00884 Sulfatase 293 563 9.0E-47 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 7 442 3.4E-194 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 1.3E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 1.3E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 234 249 1.3E-13 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 258 365 3.1E-31 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 373 441 9.6E-16 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 3 444 47.444 T 11-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 SUPERFAMILY SSF53738 258 364 9.03E-28 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 SUPERFAMILY SSF53738 2 181 3.3E-48 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 SUPERFAMILY SSF53738 156 256 1.84E-30 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 157 254 1.2E-18 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 SUPERFAMILY SSF55957 357 443 3.53E-22 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Gene3D G3DSA:3.40.120.10 3 154 8.0E-48 T 11-10-2018 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Gene3D G3DSA:3.30.310.50 370 444 4.4E-25 T 11-10-2018 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Gene3D G3DSA:3.40.120.10 175 362 1.5E-63 T 11-10-2018 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 4 135 3.8E-45 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1476 12ee3acf12740b8b3a8acfd0e9a5194c 444 Gene3D G3DSA:3.40.120.10 257 339 1.5E-63 T 11-10-2018 APJL_1527 431879649b8a944183764d14e79ccfb3 954 SUPERFAMILY SSF52374 6 647 5.63E-137 T 11-10-2018 APJL_1527 431879649b8a944183764d14e79ccfb3 954 Gene3D G3DSA:3.40.50.620 8 202 1.3E-62 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1527 431879649b8a944183764d14e79ccfb3 954 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 20 637 2.4E-233 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1527 431879649b8a944183764d14e79ccfb3 954 TIGRFAM TIGR00422 valS: valine--tRNA ligase 7 934 0.0 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APJL_1527 431879649b8a944183764d14e79ccfb3 954 Gene3D G3DSA:1.10.287.380 880 952 2.3E-19 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 APJL_1527 431879649b8a944183764d14e79ccfb3 954 SUPERFAMILY SSF46589 887 951 9.42E-18 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 APJL_1527 431879649b8a944183764d14e79ccfb3 954 SUPERFAMILY SSF47323 648 902 6.73E-70 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1527 431879649b8a944183764d14e79ccfb3 954 Hamap MF_02004 Valine--tRNA ligase [valS]. 7 952 16.144 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APJL_1527 431879649b8a944183764d14e79ccfb3 954 Pfam PF08264 Anticodon-binding domain of tRNA 677 825 6.8E-44 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 APJL_1527 431879649b8a944183764d14e79ccfb3 954 Gene3D G3DSA:3.40.50.620 363 636 3.2E-61 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1527 431879649b8a944183764d14e79ccfb3 954 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 48 59 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1527 431879649b8a944183764d14e79ccfb3 954 Gene3D G3DSA:1.10.730.10 641 819 7.4E-55 T 11-10-2018 APJL_1527 431879649b8a944183764d14e79ccfb3 954 PRINTS PR00986 Valyl-tRNA synthetase signature 475 496 6.3E-37 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APJL_1527 431879649b8a944183764d14e79ccfb3 954 PRINTS PR00986 Valyl-tRNA synthetase signature 506 524 6.3E-37 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APJL_1527 431879649b8a944183764d14e79ccfb3 954 PRINTS PR00986 Valyl-tRNA synthetase signature 242 259 6.3E-37 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APJL_1527 431879649b8a944183764d14e79ccfb3 954 PRINTS PR00986 Valyl-tRNA synthetase signature 41 52 6.3E-37 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APJL_1527 431879649b8a944183764d14e79ccfb3 954 PRINTS PR00986 Valyl-tRNA synthetase signature 375 388 6.3E-37 T 11-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 APJL_1527 431879649b8a944183764d14e79ccfb3 954 SUPERFAMILY SSF50677 196 371 8.24E-60 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APJL_1527 431879649b8a944183764d14e79ccfb3 954 Gene3D G3DSA:3.90.740.10 203 362 3.2E-52 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APJL_1527 431879649b8a944183764d14e79ccfb3 954 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 889 949 9.3E-17 T 11-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 APJL_1603 87c1dfdb4704493efa5eb1fe4b04667c 43 Pfam PF03956 Lysine exporter LysO 13 42 1.4E-5 T 11-10-2018 IPR005642 Lysine exporter LysO APJL_0575 c7196e59e50569bf08f0a2fefa0457c1 391 SUPERFAMILY SSF103473 4 386 3.53E-56 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_0575 c7196e59e50569bf08f0a2fefa0457c1 391 Pfam PF07690 Major Facilitator Superfamily 20 329 3.2E-33 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_0575 c7196e59e50569bf08f0a2fefa0457c1 391 Gene3D G3DSA:1.20.1250.20 11 384 5.5E-44 T 11-10-2018 APJL_0777 3d6d30df7cb3dbee72bce9f81385b1b3 335 Pfam PF01180 Dihydroorotate dehydrogenase 43 333 7.4E-85 T 11-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 APJL_0777 3d6d30df7cb3dbee72bce9f81385b1b3 335 Gene3D G3DSA:3.20.20.70 1 332 1.1E-128 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0777 3d6d30df7cb3dbee72bce9f81385b1b3 335 PIRSF PIRSF000164 10 335 3.2E-88 T 11-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 APJL_0777 3d6d30df7cb3dbee72bce9f81385b1b3 335 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 76 95 - T 11-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 APJL_0777 3d6d30df7cb3dbee72bce9f81385b1b3 335 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 2 333 1.5E-138 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APJL_0777 3d6d30df7cb3dbee72bce9f81385b1b3 335 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 1 332 48.438 T 11-10-2018 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 APJL_0777 3d6d30df7cb3dbee72bce9f81385b1b3 335 SUPERFAMILY SSF51395 1 332 5.86E-100 T 11-10-2018 APJL_1653 37f1f2a42e1add6518b88a2c74d0c90d 209 Pfam PF00005 ABC transporter 20 166 8.2E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1653 37f1f2a42e1add6518b88a2c74d0c90d 209 SUPERFAMILY SSF52540 3 207 6.53E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1653 37f1f2a42e1add6518b88a2c74d0c90d 209 Gene3D G3DSA:3.40.50.300 1 209 9.3E-50 T 11-10-2018 APJL_1653 37f1f2a42e1add6518b88a2c74d0c90d 209 SMART SM00382 28 207 9.2E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0858 ea859df7bae934f96ca0b56f1081005c 385 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 8 376 4.2E-146 T 11-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 APJL_0858 ea859df7bae934f96ca0b56f1081005c 385 SMART SM00729 7 231 3.4E-42 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APJL_0858 ea859df7bae934f96ca0b56f1081005c 385 Gene3D G3DSA:3.80.30.20 2 304 8.8E-91 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APJL_0858 ea859df7bae934f96ca0b56f1081005c 385 Pfam PF06969 HemN C-terminal domain 312 372 6.9E-8 T 11-10-2018 IPR010723 HemN, C-terminal APJL_0858 ea859df7bae934f96ca0b56f1081005c 385 SUPERFAMILY SSF102114 6 384 9.81E-100 T 11-10-2018 APJL_0858 ea859df7bae934f96ca0b56f1081005c 385 Pfam PF04055 Radical SAM superfamily 12 182 3.1E-14 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_0871 91de2aaf99f018c19c4ad95f07322c3f 221 Gene3D G3DSA:1.10.3290.10 1 213 3.3E-63 T 11-10-2018 IPR036597 Fido-like domain superfamily APJL_0871 91de2aaf99f018c19c4ad95f07322c3f 221 SUPERFAMILY SSF140931 37 212 1.02E-46 T 11-10-2018 IPR036597 Fido-like domain superfamily APJL_0871 91de2aaf99f018c19c4ad95f07322c3f 221 Pfam PF02661 Fic/DOC family 62 159 1.4E-25 T 11-10-2018 IPR003812 Fido domain APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 Hamap MF_00782 Glutathione biosynthesis bifunctional protein GshAB [gshAB]. 1 757 423.938 T 11-10-2018 IPR006335 Glutathione biosynthesis bifunctional protein GshAB GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 Pfam PF04262 Glutamate-cysteine ligase 7 252 5.3E-60 T 11-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 Pfam PF04262 Glutamate-cysteine ligase 256 322 2.8E-13 T 11-10-2018 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 Gene3D G3DSA:3.30.470.20 651 753 6.6E-9 T 11-10-2018 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 SUPERFAMILY SSF55931 3 459 5.56E-132 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 TIGRFAM TIGR01435 glu_cys_lig_rel: glutamate--cysteine ligase/glutathione synthase 12 753 2.4E-304 T 11-10-2018 IPR006335 Glutathione biosynthesis bifunctional protein GshAB GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2+6.3.2.3|KEGG: 00480+6.3.2.2+6.3.2.3|MetaCyc: PWY-6840|MetaCyc: PWY-7255 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 Gene3D G3DSA:3.30.590.20 1 430 2.3E-148 T 11-10-2018 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 Gene3D G3DSA:3.30.470.20 488 597 1.8E-14 T 11-10-2018 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 Gene3D G3DSA:3.30.1490.20 504 574 1.8E-14 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 SUPERFAMILY SSF56059 489 754 2.05E-27 T 11-10-2018 APJL_1439 0eedd3ce98f072729d7de85c99db6a06 757 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 489 590 1.4E-4 T 11-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 SUPERFAMILY SSF52313 6 230 4.45E-93 T 11-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 40.22 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 11-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 Gene3D G3DSA:3.40.50.10490 8 219 4.1E-90 T 11-10-2018 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 Pfam PF00318 Ribosomal protein S2 9 224 1.3E-90 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 Gene3D G3DSA:1.10.287.610 103 150 4.1E-90 T 11-10-2018 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 225 5.4E-105 T 11-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.5E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.5E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.5E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.5E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.5E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0559 3d3f806736d2aa60e036bc1501a1e4f8 238 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.5E-36 T 11-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0504 09153a862cff4a7f610303ae6604c513 102 SUPERFAMILY SSF48295 2 98 4.55E-30 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APJL_0504 09153a862cff4a7f610303ae6604c513 102 PIRSF PIRSF003196 4 102 6.9E-37 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 APJL_0504 09153a862cff4a7f610303ae6604c513 102 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 11 94 4.0E-25 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 APJL_0504 09153a862cff4a7f610303ae6604c513 102 Gene3D G3DSA:1.10.1270.10 3 100 1.0E-32 T 11-10-2018 IPR038116 TrpR-like superfamily APJL_0504 09153a862cff4a7f610303ae6604c513 102 Hamap MF_00475 Trp operon repressor [trpR]. 9 102 21.716 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 APJL_0504 09153a862cff4a7f610303ae6604c513 102 TIGRFAM TIGR01321 TrpR: trp operon repressor 5 98 4.0E-36 T 11-10-2018 IPR013335 Trp repressor, bacterial GO:0006355 APJL_0504 09153a862cff4a7f610303ae6604c513 102 Pfam PF01371 Trp repressor protein 11 97 6.7E-31 T 11-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 APJL_0018 14ffbd110071b10332de3962fd60e832 392 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 23 378 3.9E-124 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0018 14ffbd110071b10332de3962fd60e832 392 Hamap MF_00913 Probable peptidoglycan glycosyltransferase FtsW [ftsW]. 21 389 39.444 T 11-10-2018 IPR013437 Probable peptidoglycan glycosyltransferase FtsW GO:0009252|GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0018 14ffbd110071b10332de3962fd60e832 392 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 337 361 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0018 14ffbd110071b10332de3962fd60e832 392 Pfam PF01098 Cell cycle protein 25 380 8.4E-115 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0916 fbe6688f77a2153ebe6a712c7d44eda4 234 Gene3D G3DSA:1.10.510.10 137 234 1.7E-14 T 11-10-2018 APJL_0916 fbe6688f77a2153ebe6a712c7d44eda4 234 SUPERFAMILY SSF56112 82 212 2.16E-18 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APJL_0916 fbe6688f77a2153ebe6a712c7d44eda4 234 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 1 234 34.907 T 11-10-2018 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 APJL_0916 fbe6688f77a2153ebe6a712c7d44eda4 234 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 30 232 4.1E-63 T 11-10-2018 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 Gene3D G3DSA:3.40.50.740 92 575 2.0E-228 T 11-10-2018 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 Gene3D G3DSA:3.90.55.10 49 621 2.0E-228 T 11-10-2018 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 SUPERFAMILY SSF50692 674 823 6.7E-43 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 Pfam PF00384 Molybdopterin oxidoreductase 92 566 1.8E-72 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 SUPERFAMILY SSF53706 52 666 8.38E-162 T 11-10-2018 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 Pfam PF01568 Molydopterin dinucleotide binding domain 682 802 2.5E-23 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 Gene3D G3DSA:3.40.228.10 185 647 2.0E-228 T 11-10-2018 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 722 749 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 TIGRFAM TIGR02164 torA: trimethylamine-N-oxide reductase TorA 6 826 0.0 T 11-10-2018 IPR011887 Trimethylamine-N-oxide reductase TorA GO:0030151|GO:0042597|GO:0050626 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 Gene3D G3DSA:2.40.40.20 655 819 7.9E-51 T 11-10-2018 APJL_1834 bfb900f54a1dd9d22180db0d946882bf 827 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 509 526 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 1.1E-138 T 11-10-2018 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 SUPERFAMILY SSF52540 1 239 1.36E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 Gene3D G3DSA:3.40.50.300 5 214 8.1E-19 T 11-10-2018 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 Pfam PF13500 AAA domain 3 229 2.4E-52 T 11-10-2018 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 Pfam PF07085 DRTGG domain 233 344 3.4E-27 T 11-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 SUPERFAMILY SSF53659 392 709 7.81E-95 T 11-10-2018 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 SUPERFAMILY SSF75138 229 353 7.46E-24 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 3.5E-128 T 11-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 PIRSF PIRSF006107 1 712 0.0 T 11-10-2018 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 Gene3D G3DSA:3.40.50.10950 398 709 1.2E-135 T 11-10-2018 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 Gene3D G3DSA:3.40.50.10750 529 682 1.2E-135 T 11-10-2018 APJL_0635 cb5d78f4789ddbb638cdf87226b01a19 712 Gene3D G3DSA:3.40.1390.20 224 366 7.1E-14 T 11-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily APJL_1451 486b86027ce1c97dc19682199c140090 499 SUPERFAMILY SSF52540 5 223 4.0E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1451 486b86027ce1c97dc19682199c140090 499 ProSitePatterns PS00211 ABC transporters family signature. 400 414 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1451 486b86027ce1c97dc19682199c140090 499 Gene3D G3DSA:3.40.50.300 255 495 1.2E-38 T 11-10-2018 APJL_1451 486b86027ce1c97dc19682199c140090 499 Pfam PF00005 ABC transporter 22 171 1.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1451 486b86027ce1c97dc19682199c140090 499 Gene3D G3DSA:3.40.50.300 1 241 1.1E-55 T 11-10-2018 APJL_1451 486b86027ce1c97dc19682199c140090 499 SUPERFAMILY SSF52540 246 479 2.17E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1451 486b86027ce1c97dc19682199c140090 499 SMART SM00382 31 218 6.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1451 486b86027ce1c97dc19682199c140090 499 SMART SM00382 281 476 0.69 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1451 486b86027ce1c97dc19682199c140090 499 Pfam PF00005 ABC transporter 273 427 4.6E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 Pfam PF01578 Cytochrome C assembly protein 89 297 1.5E-54 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 2.1E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 2.1E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 2.1E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 631 644 2.1E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 2.1E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 2.1E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 2.1E-58 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 641 5.8E-283 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 1.1E-94 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 1.1E-94 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 1.1E-94 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 1.1E-94 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 1.1E-94 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 1.1E-94 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 1.1E-94 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 1.1E-94 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1385 316672a40b449a9aaa9e5bc0881dac06 649 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 638 1.4E-122 T 11-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal APJL_1928 c510761ca77a130d9ec196cec781b40b 98 ProDom PD068240 PRECURSOR SIGNAL HI0941 PM0962 11 92 3.0E-17 T 11-10-2018 IPR020511 Uncharacterised protein family HI0941 APJL_1928 c510761ca77a130d9ec196cec781b40b 98 Pfam PF17344 Family of unknown function (DUF5374) 57 96 3.6E-18 T 11-10-2018 IPR020511 Uncharacterised protein family HI0941 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 SUPERFAMILY SSF51366 267 464 1.4E-49 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 11-10-2018 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 6 264 33.42 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 265 469 28.968 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 267 463 5.8E-56 T 11-10-2018 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 Gene3D G3DSA:3.20.20.70 266 461 1.5E-168 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 SUPERFAMILY SSF51366 15 264 1.53E-75 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 Gene3D G3DSA:3.20.20.70 11 265 1.5E-168 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0870 18d721af513cf26451a8359f6f4dc219 469 Pfam PF00218 Indole-3-glycerol phosphate synthase 8 261 2.5E-91 T 11-10-2018 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 APJL_0071 32d4b5b93d23b1ad7e2db87b9258eebc 114 SUPERFAMILY SSF55298 10 114 7.23E-29 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APJL_0071 32d4b5b93d23b1ad7e2db87b9258eebc 114 Pfam PF01042 Endoribonuclease L-PSP 2 113 1.1E-27 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APJL_0071 32d4b5b93d23b1ad7e2db87b9258eebc 114 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 90 108 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 APJL_0071 32d4b5b93d23b1ad7e2db87b9258eebc 114 Gene3D G3DSA:3.30.1330.40 1 114 3.3E-37 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 3.8E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 Gene3D G3DSA:3.40.190.10 91 286 1.6E-60 T 11-10-2018 APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.7E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.7E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.7E-8 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 Gene3D G3DSA:1.10.10.10 1 85 4.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 SUPERFAMILY SSF46785 2 86 2.2E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 SUPERFAMILY SSF53850 88 292 1.25E-36 T 11-10-2018 APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 Gene3D G3DSA:3.40.190.10 161 258 1.6E-60 T 11-10-2018 APJL_1506 678ff3a84a5406c0081a03a3739aac32 297 Pfam PF03466 LysR substrate binding domain 88 283 1.2E-40 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_0137 246d9ffc5d3637ea179dac0d39e8dd83 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.546 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APJL_0137 246d9ffc5d3637ea179dac0d39e8dd83 545 Gene3D G3DSA:3.40.50.880 286 545 2.3E-106 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_0137 246d9ffc5d3637ea179dac0d39e8dd83 545 SUPERFAMILY SSF52317 289 541 1.53E-88 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_0137 246d9ffc5d3637ea179dac0d39e8dd83 545 Gene3D G3DSA:3.40.50.300 1 285 4.6E-134 T 11-10-2018 APJL_0137 246d9ffc5d3637ea179dac0d39e8dd83 545 SUPERFAMILY SSF52540 3 269 4.25E-121 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0137 246d9ffc5d3637ea179dac0d39e8dd83 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 1.8E-62 T 11-10-2018 IPR017926 Glutamine amidotransferase APJL_0137 246d9ffc5d3637ea179dac0d39e8dd83 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 1.1E-263 T 11-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APJL_0137 246d9ffc5d3637ea179dac0d39e8dd83 545 Pfam PF06418 CTP synthase N-terminus 5 266 1.5E-125 T 11-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 SUPERFAMILY SSF69705 1 126 3.14E-39 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 441 490 1.4E-16 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 3.6E-17 T 11-10-2018 IPR010214 Transcription termination factor NusA, C-terminal duplication APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Gene3D G3DSA:2.40.50.140 136 198 2.6E-16 T 11-10-2018 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Pfam PF13184 NusA-like KH domain 230 296 7.0E-29 T 11-10-2018 IPR025249 KH domain, NusA-like GO:0003723 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 SUPERFAMILY SSF47794 431 492 9.26E-17 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 430 27.875 T 11-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Gene3D G3DSA:1.10.150.20 353 422 1.2E-21 T 11-10-2018 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 SUPERFAMILY SSF50249 133 199 1.72E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 342 1.8E-123 T 11-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 SMART SM00316 133 200 6.5E-7 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 SUPERFAMILY SSF47794 354 415 1.73E-12 T 11-10-2018 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Pfam PF14520 Helix-hairpin-helix domain 433 487 1.3E-9 T 11-10-2018 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 SUPERFAMILY SSF54814 202 278 8.5E-29 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 SUPERFAMILY SSF54814 279 342 3.99E-14 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Pfam PF08529 NusA N-terminal domain 4 124 3.1E-34 T 11-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Gene3D G3DSA:3.30.300.20 278 346 3.9E-23 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Gene3D G3DSA:3.30.300.20 199 277 9.5E-31 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Gene3D G3DSA:3.30.1480.10 1 129 2.0E-39 T 11-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 APJL_0629 b48eb29458870f9b15ae627cca8dc4d0 493 Gene3D G3DSA:1.10.150.20 432 491 3.4E-23 T 11-10-2018 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 SUPERFAMILY SSF47807 133 252 8.07E-30 T 11-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Gene3D G3DSA:1.10.150.20 701 844 1.2E-114 T 11-10-2018 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 TIGRFAM TIGR00593 pola: DNA polymerase I 1 919 8.9E-277 T 11-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 1 132 2.8E-42 T 11-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Gene3D G3DSA:3.30.420.10 295 533 2.6E-68 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 SUPERFAMILY SSF88723 2 132 3.92E-45 T 11-10-2018 IPR029060 PIN-like domain superfamily APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Gene3D G3DSA:3.30.70.370 656 915 1.2E-114 T 11-10-2018 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Gene3D G3DSA:3.40.50.1010 1 246 3.2E-80 T 11-10-2018 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 SUPERFAMILY SSF53098 301 509 3.69E-52 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 805 816 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 866 879 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 670 685 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 837 853 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 692 715 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 783 794 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 722 735 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 746 771 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 PRINTS PR00868 DNA-polymerase family A (pol I) signature 647 669 1.8E-80 T 11-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 SMART SM00279 135 170 4.6E-13 T 11-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 SUPERFAMILY SSF56672 513 919 6.67E-158 T 11-10-2018 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 ProSitePatterns PS00447 DNA polymerase family A signature. 746 765 - T 11-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Pfam PF01612 3'-5' exonuclease 298 508 1.5E-40 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 133 233 1.1E-28 T 11-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 SMART SM00475 1 230 4.2E-97 T 11-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 SMART SM00474 298 508 2.0E-38 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Gene3D G3DSA:1.20.1060.10 534 650 2.1E-39 T 11-10-2018 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 SMART SM00482 678 883 1.3E-116 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Gene3D G3DSA:1.10.150.20 136 215 3.2E-80 T 11-10-2018 APJL_0500 1a8638df6ece4d6066b6ca4550edf615 919 Pfam PF00476 DNA polymerase family A 542 917 3.2E-157 T 11-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1903 dafeebac015d102c31687ef882bb9f07 300 SUPERFAMILY SSF46785 6 82 8.88E-18 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1903 dafeebac015d102c31687ef882bb9f07 300 Gene3D G3DSA:3.40.190.290 90 291 6.0E-31 T 11-10-2018 APJL_1903 dafeebac015d102c31687ef882bb9f07 300 Gene3D G3DSA:1.10.10.10 4 85 3.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1903 dafeebac015d102c31687ef882bb9f07 300 SUPERFAMILY SSF53850 88 295 8.14E-24 T 11-10-2018 APJL_1903 dafeebac015d102c31687ef882bb9f07 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 6.7E-17 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1903 dafeebac015d102c31687ef882bb9f07 300 Pfam PF03466 LysR substrate binding domain 87 290 1.8E-19 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Gene3D G3DSA:3.10.20.690 599 688 2.6E-29 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 37 179 2.2E-21 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Gene3D G3DSA:3.40.50.670 689 810 3.5E-27 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Gene3D G3DSA:3.40.50.670 405 573 2.7E-75 T 11-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 SUPERFAMILY SSF54211 226 399 1.18E-59 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0828 4cd8a0028896a877a04398dca5d26916 810 SMART SM00433 40 804 4.4E-283 T 11-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 ProSitePatterns PS00177 DNA topoisomerase II signature. 429 437 - T 11-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Gene3D G3DSA:3.30.565.10 6 225 8.9E-96 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_0828 4cd8a0028896a877a04398dca5d26916 810 SMART SM00387 36 180 1.8E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_0828 4cd8a0028896a877a04398dca5d26916 810 SUPERFAMILY SSF55874 9 225 9.04E-76 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Gene3D G3DSA:3.30.230.10 226 399 3.0E-73 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 186 201 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 780 796 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 10 20 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 367 381 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 319 335 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 764 776 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 381 401 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 201 214 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 225 247 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR01159 DNA gyrase subunit B signature 477 486 1.4E-76 T 11-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 SUPERFAMILY SSF56719 401 802 9.15E-88 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 739 800 9.4E-30 T 11-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 743 759 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 532 544 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 75 88 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 273 286 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 118 132 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 427 441 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 40 55 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 494 510 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 PRINTS PR00418 DNA topoisomerase II family signature 512 529 1.2E-72 T 11-10-2018 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Pfam PF01751 Toprim domain 426 538 1.4E-18 T 11-10-2018 IPR006171 TOPRIM domain APJL_0828 4cd8a0028896a877a04398dca5d26916 810 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 10 809 0.0 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Pfam PF00204 DNA gyrase B 226 397 1.0E-58 T 11-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0828 4cd8a0028896a877a04398dca5d26916 810 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 7 810 105.396 T 11-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_2016 2439e85d2d892b301b2966d06e2b8faf 401 Gene3D G3DSA:3.40.50.10300 185 401 9.3E-82 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APJL_2016 2439e85d2d892b301b2966d06e2b8faf 401 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 2 394 1.1E-156 T 11-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 APJL_2016 2439e85d2d892b301b2966d06e2b8faf 401 Gene3D G3DSA:3.40.50.1950 1 184 1.3E-55 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 APJL_2016 2439e85d2d892b301b2966d06e2b8faf 401 SUPERFAMILY SSF102645 183 398 4.71E-77 T 11-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APJL_2016 2439e85d2d892b301b2966d06e2b8faf 401 SUPERFAMILY SSF52507 1 180 2.09E-59 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 APJL_2016 2439e85d2d892b301b2966d06e2b8faf 401 Pfam PF02441 Flavoprotein 5 178 5.8E-43 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APJL_2016 2439e85d2d892b301b2966d06e2b8faf 401 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 368 1.5E-71 T 11-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 SUPERFAMILY SSF56784 4 220 1.22E-58 T 11-10-2018 IPR036412 HAD-like superfamily APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 89 189 2.5E-12 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 Gene3D G3DSA:1.10.150.240 20 90 6.4E-66 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 135 151 3.0E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 5 16 3.0E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 153 173 3.0E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 104 117 3.0E-9 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 95 185 8.4E-11 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 5 221 36.383 T 11-10-2018 IPR037512 Phosphoglycolate phosphatase, prokaryotic GO:0005975|GO:0008967 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 Pfam PF13419 Haloacid dehalogenase-like hydrolase 10 190 2.1E-37 T 11-10-2018 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 Gene3D G3DSA:3.40.50.1000 8 211 6.4E-66 T 11-10-2018 IPR023214 HAD superfamily APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 ProSitePatterns PS01228 Hypothetical cof family signature 1. 7 18 - T 11-10-2018 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 10 215 4.2E-67 T 11-10-2018 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic GO:0016791 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 APJL_1936 92238ca3ca3bd553bb5d9b1ecc101df0 221 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 82 190 3.6E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_0332 ed222dff104393596ce29658cf0281cb 280 Gene3D G3DSA:3.40.50.150 1 280 7.1E-113 T 11-10-2018 APJL_0332 ed222dff104393596ce29658cf0281cb 280 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 39.896 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 APJL_0332 ed222dff104393596ce29658cf0281cb 280 SUPERFAMILY SSF53335 9 279 1.38E-95 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0332 ed222dff104393596ce29658cf0281cb 280 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 278 2.5E-107 T 11-10-2018 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 APJL_0264 e82a98f2ff330d48bd48d0acad09eba6 206 Gene3D G3DSA:3.30.63.10 36 95 1.2E-72 T 11-10-2018 APJL_0264 e82a98f2ff330d48bd48d0acad09eba6 206 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 3 183 1.3E-74 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 APJL_0264 e82a98f2ff330d48bd48d0acad09eba6 206 SUPERFAMILY SSF52540 3 189 9.06E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0264 e82a98f2ff330d48bd48d0acad09eba6 206 Pfam PF00625 Guanylate kinase 4 184 7.4E-61 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APJL_0264 e82a98f2ff330d48bd48d0acad09eba6 206 SMART SM00072 2 186 2.4E-70 T 11-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit APJL_0264 e82a98f2ff330d48bd48d0acad09eba6 206 Gene3D G3DSA:3.40.50.300 7 182 1.2E-72 T 11-10-2018 APJL_0264 e82a98f2ff330d48bd48d0acad09eba6 206 Hamap MF_00328 Guanylate kinase [gmk]. 1 186 37.882 T 11-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 APJL_0264 e82a98f2ff330d48bd48d0acad09eba6 206 ProSitePatterns PS00856 Guanylate kinase-like signature. 39 56 - T 11-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 SMART SM00493 3 140 4.9E-35 T 11-10-2018 IPR006171 TOPRIM domain APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Gene3D G3DSA:3.30.65.10 748 811 1.3E-29 T 11-10-2018 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 604 629 4.3E-6 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 715 749 6.4E-10 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Gene3D G3DSA:1.10.290.10 287 411 4.7E-162 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Gene3D G3DSA:2.20.25.10 812 869 1.1E-29 T 11-10-2018 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 SMART SM00437 279 534 2.1E-125 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 SUPERFAMILY SSF57783 707 745 8.67E-6 T 11-10-2018 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 SUPERFAMILY SSF56712 3 616 1.44E-202 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 316 330 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 641 4.4E-249 T 11-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Gene3D G3DSA:2.70.20.10 221 480 4.7E-162 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Pfam PF01131 DNA topoisomerase 166 571 2.6E-128 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Pfam PF08272 Topoisomerase I zinc-ribbon-like 828 867 3.8E-19 T 11-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Pfam PF08272 Topoisomerase I zinc-ribbon-like 761 797 4.8E-12 T 11-10-2018 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Gene3D G3DSA:1.10.460.10 173 578 4.7E-162 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 SUPERFAMILY SSF57783 748 811 1.87E-19 T 11-10-2018 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 SUPERFAMILY SSF57783 813 868 3.74E-22 T 11-10-2018 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Gene3D G3DSA:3.40.50.140 1 171 3.6E-67 T 11-10-2018 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Pfam PF01751 Toprim domain 5 150 1.9E-34 T 11-10-2018 IPR006171 TOPRIM domain APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 738 56.481 T 11-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 199 217 1.9E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 397 413 1.9E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 497 511 1.9E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 114 127 1.9E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 321 330 1.9E-37 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0694 642c19962b4cb1c5595bc30cd13a2175 869 SMART SM00436 141 229 6.9E-48 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 APJL_0483 9f2fb3721109a0eab043898a1b8b65bc 266 SUPERFAMILY SSF52540 12 233 1.4E-49 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0483 9f2fb3721109a0eab043898a1b8b65bc 266 Gene3D G3DSA:3.40.50.300 9 253 7.4E-53 T 11-10-2018 APJL_0483 9f2fb3721109a0eab043898a1b8b65bc 266 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0483 9f2fb3721109a0eab043898a1b8b65bc 266 Pfam PF00005 ABC transporter 35 163 1.1E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0483 9f2fb3721109a0eab043898a1b8b65bc 266 SMART SM00382 44 214 4.7E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_2091 cbfb567c1e8e211df44eae639367143b 284 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 49.4 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APJL_2091 cbfb567c1e8e211df44eae639367143b 284 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 1.9E-125 T 11-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APJL_2091 cbfb567c1e8e211df44eae639367143b 284 Gene3D G3DSA:3.20.20.70 1 284 2.4E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_2091 cbfb567c1e8e211df44eae639367143b 284 Pfam PF00793 DAHP synthetase I family 10 275 1.7E-67 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APJL_2091 cbfb567c1e8e211df44eae639367143b 284 SUPERFAMILY SSF51569 3 278 6.14E-107 T 11-10-2018 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 632 728 9.4E-22 T 11-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 SUPERFAMILY SSF81296 120 226 1.75E-33 T 11-10-2018 IPR014756 Immunoglobulin E-set APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 PIRSF PIRSF000463 10 740 7.4E-278 T 11-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 Gene3D G3DSA:2.60.40.1180 627 730 5.0E-39 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 Pfam PF00128 Alpha amylase, catalytic domain 276 350 1.2E-12 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 Gene3D G3DSA:2.60.40.10 7 225 6.7E-70 T 11-10-2018 IPR013783 Immunoglobulin-like fold APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 SUPERFAMILY SSF51011 627 729 8.09E-34 T 11-10-2018 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 SUPERFAMILY SSF51445 233 625 2.15E-111 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 SUPERFAMILY SSF81296 21 117 2.87E-12 T 11-10-2018 IPR014756 Immunoglobulin E-set APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 128 210 2.9E-23 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 104 730 42.317 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 112 727 1.1E-287 T 11-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 Gene3D G3DSA:3.20.20.80 234 616 1.3E-165 T 11-10-2018 APJL_0362 6c36bcbfc2ab21f3f1989ce1a52baa52 777 SMART SM00642 250 600 1.9E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APJL_1482 67da76a5a43d4d2199edc846a00dd8e8 306 Gene3D G3DSA:3.40.1350.10 153 270 3.5E-6 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 APJL_1482 67da76a5a43d4d2199edc846a00dd8e8 306 Pfam PF06250 Protein of unknown function (DUF1016) 1 291 8.7E-107 T 11-10-2018 IPR009362 Protein of unknown function DUF1016 APJL_1408 7376acf69960c6617630a4e3b2972692 504 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 92 118 1.3E-29 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_1408 7376acf69960c6617630a4e3b2972692 504 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 19 40 1.3E-29 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_1408 7376acf69960c6617630a4e3b2972692 504 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 319 338 1.3E-29 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_1408 7376acf69960c6617630a4e3b2972692 504 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 48 67 1.3E-29 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_1408 7376acf69960c6617630a4e3b2972692 504 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 265 285 1.3E-29 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_1408 7376acf69960c6617630a4e3b2972692 504 Pfam PF00209 Sodium:neurotransmitter symporter family 11 127 1.1E-44 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_1408 7376acf69960c6617630a4e3b2972692 504 Pfam PF00209 Sodium:neurotransmitter symporter family 130 495 1.1E-90 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_1408 7376acf69960c6617630a4e3b2972692 504 SUPERFAMILY SSF161070 11 494 4.58E-133 T 11-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 APJL_1408 7376acf69960c6617630a4e3b2972692 504 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 35 49 - T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_1846 ee25e9fa0df1d867b8b86c0563dd6f63 262 Pfam PF01026 TatD related DNase 7 259 8.2E-80 T 11-10-2018 IPR001130 TatD family GO:0016788 APJL_1846 ee25e9fa0df1d867b8b86c0563dd6f63 262 PIRSF PIRSF005902 2 262 2.3E-79 T 11-10-2018 IPR001130 TatD family GO:0016788 APJL_1846 ee25e9fa0df1d867b8b86c0563dd6f63 262 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 195 211 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APJL_1846 ee25e9fa0df1d867b8b86c0563dd6f63 262 Gene3D G3DSA:3.20.20.140 4 262 4.3E-99 T 11-10-2018 APJL_1846 ee25e9fa0df1d867b8b86c0563dd6f63 262 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 6 14 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APJL_1846 ee25e9fa0df1d867b8b86c0563dd6f63 262 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 6 259 3.4E-96 T 11-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 APJL_1846 ee25e9fa0df1d867b8b86c0563dd6f63 262 SUPERFAMILY SSF51556 5 261 3.3E-87 T 11-10-2018 IPR032466 Metal-dependent hydrolase APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 Gene3D G3DSA:3.30.860.10 1 91 2.2E-43 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 4.0E-46 T 11-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 Pfam PF00203 Ribosomal protein S19 3 83 2.6E-36 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 SUPERFAMILY SSF54570 3 84 1.83E-35 T 11-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 7.2E-25 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 7.2E-25 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 7.2E-25 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.757 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1799 d63869c21e5a409ec218bd7dfc46ca4c 91 PIRSF PIRSF002144 1 91 4.2E-32 T 11-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 Pfam PF02769 AIR synthase related protein, C-terminal domain 146 295 1.8E-12 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 Gene3D G3DSA:3.90.650.10 141 318 1.0E-56 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 318 27.201 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 Pfam PF00586 AIR synthase related protein, N-terminal domain 25 133 4.2E-21 T 11-10-2018 IPR016188 PurM-like, N-terminal domain APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 SUPERFAMILY SSF55326 2 134 8.55E-31 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 Gene3D G3DSA:3.30.1330.10 1 140 2.0E-41 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 2 318 9.9E-111 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 SUPERFAMILY SSF56042 140 303 3.14E-38 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_0203 10cb4a5eafd23168aaf361292b3ec385 320 PIRSF PIRSF005303 1 318 1.9E-89 T 11-10-2018 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 22 316 3.7E-102 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 SUPERFAMILY SSF82114 185 317 2.83E-45 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 Gene3D G3DSA:2.40.30.30 198 320 1.4E-38 T 11-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 Gene3D G3DSA:3.40.50.620 5 196 7.0E-58 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 Pfam PF01687 Riboflavin kinase 194 314 8.9E-36 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 PIRSF PIRSF004491 1 320 1.2E-101 T 11-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 SUPERFAMILY SSF52374 19 186 1.03E-29 T 11-10-2018 APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 SMART SM00904 193 316 9.9E-59 T 11-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 APJL_0046 a235fdb8271135e5e123150c1fb5ad68 320 Pfam PF06574 FAD synthetase 17 176 2.4E-52 T 11-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 APJL_0679 58f6f69d1071386cf7bb51565d4bb054 378 PIRSF PIRSF001434 1 378 2.5E-115 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APJL_0679 58f6f69d1071386cf7bb51565d4bb054 378 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 192 206 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APJL_0679 58f6f69d1071386cf7bb51565d4bb054 378 Gene3D G3DSA:3.90.1150.10 291 375 3.1E-26 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0679 58f6f69d1071386cf7bb51565d4bb054 378 Gene3D G3DSA:3.90.1150.10 259 290 6.7E-8 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0679 58f6f69d1071386cf7bb51565d4bb054 378 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 374 4.2E-129 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APJL_0679 58f6f69d1071386cf7bb51565d4bb054 378 Gene3D G3DSA:3.40.640.10 6 258 9.9E-84 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0679 58f6f69d1071386cf7bb51565d4bb054 378 SUPERFAMILY SSF53383 11 375 7.45E-102 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_1059 b7fddb650f2a98cc92c81f40cac8dc6c 302 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 134 297 1.0E-62 T 11-10-2018 IPR005642 Lysine exporter LysO APJL_1059 b7fddb650f2a98cc92c81f40cac8dc6c 302 Pfam PF03956 Lysine exporter LysO 114 297 2.1E-51 T 11-10-2018 IPR005642 Lysine exporter LysO APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 Gene3D G3DSA:1.20.1270.20 149 232 3.1E-24 T 11-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 Gene3D G3DSA:3.40.50.2030 380 549 1.6E-55 T 11-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 548 5.0E-222 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 Gene3D G3DSA:3.40.50.2030 234 379 7.9E-64 T 11-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 Pfam PF03063 Prismane/CO dehydrogenase family 1 544 3.5E-157 T 11-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 SUPERFAMILY SSF56821 1 545 4.58E-186 T 11-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 PIRSF PIRSF000076 1 551 4.3E-226 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 Gene3D G3DSA:1.20.1270.20 1 139 4.4E-34 T 11-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 APJL_1574 2ca52fd5e12690f854416603f5375ab0 551 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 550 19.911 T 11-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 PIRSF PIRSF039144 1 112 6.0E-58 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 Gene3D G3DSA:3.30.70.120 1 112 2.3E-49 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 SUPERFAMILY SSF54913 1 112 3.08E-47 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 SMART SM00938 4 105 5.2E-69 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-10-2018 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 PRINTS PR00340 P-II protein signature 2 17 1.1E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 PRINTS PR00340 P-II protein signature 52 75 1.1E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 PRINTS PR00340 P-II protein signature 83 103 1.1E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 PRINTS PR00340 P-II protein signature 23 41 1.1E-44 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 8.2E-45 T 11-10-2018 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 APJL_1544 fec5ad9cf26844b1cad0a99712ca64ea 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-10-2018 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 Gene3D G3DSA:3.90.79.10 4 131 2.4E-32 T 11-10-2018 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 Pfam PF00293 NUDIX domain 9 127 6.1E-20 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 PRINTS PR00502 NUDIX hydrolase family signature 49 64 6.1E-8 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 PRINTS PR00502 NUDIX hydrolase family signature 35 49 6.1E-8 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 ProSitePatterns PS00893 Nudix box signature. 40 61 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 SUPERFAMILY SSF55811 2 128 6.36E-32 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 TIGRFAM TIGR00586 mutt: mutator mutT protein 5 129 4.3E-54 T 11-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 PRINTS PR01401 Mutator MutT protein signature 4 25 3.4E-12 T 11-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 APJL_0246 a1843952ddf06e08df7c0a3381372b48 132 PRINTS PR01401 Mutator MutT protein signature 79 92 3.4E-12 T 11-10-2018 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 SUPERFAMILY SSF52440 1 103 1.58E-37 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 SMART SM01210 330 423 9.3E-51 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 9.2E-37 T 11-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 SUPERFAMILY SSF51246 329 423 2.3E-31 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 43.459 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 421 2.6E-26 T 11-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 Gene3D G3DSA:3.40.50.20 2 95 7.2E-39 T 11-10-2018 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 SUPERFAMILY SSF56059 104 320 6.54E-68 T 11-10-2018 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 SMART SM01209 103 296 2.3E-141 T 11-10-2018 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 2.3E-85 T 11-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 Gene3D G3DSA:3.90.600.10 330 428 5.2E-32 T 11-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 1.1E-189 T 11-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 Gene3D G3DSA:3.30.1490.20 121 190 1.7E-29 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 Gene3D G3DSA:3.30.470.20 191 329 1.1E-59 T 11-10-2018 APJL_1193 5b3392fd830b119e8afd5ec06f33f802 428 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 11-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_0598 fb2dd40739b73146653bbb1d972da9e5 307 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 286 7.5E-22 T 11-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain APJL_0598 fb2dd40739b73146653bbb1d972da9e5 307 Pfam PF01545 Cation efflux family 16 206 4.8E-35 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APJL_0598 fb2dd40739b73146653bbb1d972da9e5 307 Gene3D G3DSA:1.20.1510.10 8 206 7.9E-54 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APJL_0598 fb2dd40739b73146653bbb1d972da9e5 307 Gene3D G3DSA:3.30.70.1350 207 290 1.1E-27 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 APJL_0598 fb2dd40739b73146653bbb1d972da9e5 307 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 10 287 3.6E-63 T 11-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 APJL_0598 fb2dd40739b73146653bbb1d972da9e5 307 SUPERFAMILY SSF161111 7 207 4.58E-48 T 11-10-2018 IPR027469 Cation efflux transmembrane domain superfamily APJL_0598 fb2dd40739b73146653bbb1d972da9e5 307 SUPERFAMILY SSF160240 209 287 3.27E-22 T 11-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 SUPERFAMILY SSF81296 6 143 6.0E-36 T 11-10-2018 IPR014756 Immunoglobulin E-set APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 10 94 6.0E-17 T 11-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 6 653 1.3E-256 T 11-10-2018 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 Gene3D G3DSA:2.60.40.1180 570 656 6.7E-15 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 SMART SM00642 154 555 1.6E-7 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 SUPERFAMILY SSF51445 129 562 4.01E-122 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 Gene3D G3DSA:3.20.20.80 133 569 1.5E-167 T 11-10-2018 APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 Gene3D G3DSA:2.60.40.10 1 131 1.2E-38 T 11-10-2018 IPR013783 Immunoglobulin-like fold APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 Pfam PF00128 Alpha amylase, catalytic domain 184 291 2.4E-8 T 11-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 APJL_0363 c6e79f7b08301e8a5c9d1d6bf7b5b99b 661 SUPERFAMILY SSF51011 571 633 1.15E-8 T 11-10-2018 APJL_0583 9fab730faafaee74f7f564cadb254a8d 206 Pfam PF08942 Domain of unknown function (DUF1919) 10 202 1.4E-89 T 11-10-2018 IPR015037 Protein of unknown function DUF1919 APJL_0583 9fab730faafaee74f7f564cadb254a8d 206 SUPERFAMILY SSF142795 2 205 5.36E-91 T 11-10-2018 IPR037226 CAC2185-like superfamily APJL_0100 a46bd7405bd6938554f0ead10b0393fe 502 Gene3D G3DSA:1.20.140.10 321 463 1.6E-182 T 11-10-2018 APJL_0100 a46bd7405bd6938554f0ead10b0393fe 502 SUPERFAMILY SSF48695 50 481 1.07E-158 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily APJL_0100 a46bd7405bd6938554f0ead10b0393fe 502 Hamap MF_01182 Cytochrome c-552 [nrfA]. 1 487 59.824 T 11-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 APJL_0100 a46bd7405bd6938554f0ead10b0393fe 502 PIRSF PIRSF000243 2 490 2.3E-130 T 11-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 APJL_0100 a46bd7405bd6938554f0ead10b0393fe 502 Gene3D G3DSA:1.10.1130.10 53 482 1.6E-182 T 11-10-2018 APJL_0100 a46bd7405bd6938554f0ead10b0393fe 502 Pfam PF02335 Cytochrome c552 54 482 2.0E-182 T 11-10-2018 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 APJL_0100 a46bd7405bd6938554f0ead10b0393fe 502 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 49 485 3.9E-254 T 11-10-2018 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 249 8.0E-56 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 SMART SM01382 124 251 1.3E-90 T 11-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 PIRSF PIRSF002158 12 273 8.1E-101 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 SUPERFAMILY SSF50104 127 269 6.62E-60 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 Gene3D G3DSA:2.40.50.140 1 114 3.2E-48 T 11-10-2018 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 11-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 116 4.5E-33 T 11-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 272 2.0E-130 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 SUPERFAMILY SSF50249 2 125 3.77E-49 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 SMART SM01383 42 118 3.8E-47 T 11-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 272 47.102 T 11-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 Gene3D G3DSA:4.10.950.10 196 273 3.4E-35 T 11-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1798 001d14ab7f92a031cd6a90777eaf56e8 273 Gene3D G3DSA:2.30.30.30 115 195 5.5E-33 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 SUPERFAMILY SSF52540 245 481 3.26E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 ProSitePatterns PS00211 ABC transporters family signature. 395 409 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 SUPERFAMILY SSF52540 3 231 2.39E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 Pfam PF00005 ABC transporter 20 169 3.7E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 SMART SM00382 29 248 5.0E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 SMART SM00382 277 471 5.2E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 Pfam PF00005 ABC transporter 268 422 1.8E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 Gene3D G3DSA:3.40.50.300 1 248 5.9E-54 T 11-10-2018 APJL_1701 6735b1fb30ae83d94bbafdbb681e1e72 493 Gene3D G3DSA:3.40.50.300 254 491 3.2E-48 T 11-10-2018 APJL_1023 efdecf61172789a1191e7a46c57c028b 89 Pfam PF00312 Ribosomal protein S15 8 88 1.0E-36 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1023 efdecf61172789a1191e7a46c57c028b 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1023 efdecf61172789a1191e7a46c57c028b 89 SMART SM01387 8 88 1.2E-49 T 11-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1023 efdecf61172789a1191e7a46c57c028b 89 Gene3D G3DSA:1.10.287.10 2 89 1.8E-36 T 11-10-2018 APJL_1023 efdecf61172789a1191e7a46c57c028b 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 5.0E-30 T 11-10-2018 APJL_1023 efdecf61172789a1191e7a46c57c028b 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 5.0E-39 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1023 efdecf61172789a1191e7a46c57c028b 89 SUPERFAMILY SSF47060 3 89 1.91E-33 T 11-10-2018 IPR009068 S15/NS1, RNA-binding APJL_1023 efdecf61172789a1191e7a46c57c028b 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.867 T 11-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0915 834f1ceb4a0a06bf238bef16e363f4b5 218 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 96 112 - T 11-10-2018 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APJL_0915 834f1ceb4a0a06bf238bef16e363f4b5 218 Gene3D G3DSA:3.30.1130.10 85 218 2.8E-52 T 11-10-2018 APJL_0915 834f1ceb4a0a06bf238bef16e363f4b5 218 Gene3D G3DSA:1.10.286.10 1 84 1.9E-33 T 11-10-2018 APJL_0915 834f1ceb4a0a06bf238bef16e363f4b5 218 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 38 217 1.2E-84 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APJL_0915 834f1ceb4a0a06bf238bef16e363f4b5 218 Pfam PF01227 GTP cyclohydrolase I 38 216 1.6E-63 T 11-10-2018 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APJL_0915 834f1ceb4a0a06bf238bef16e363f4b5 218 SUPERFAMILY SSF55620 7 217 2.08E-74 T 11-10-2018 APJL_0915 834f1ceb4a0a06bf238bef16e363f4b5 218 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 34 217 34.292 T 11-10-2018 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852|Reactome: R-HSA-1474151 APJL_0538 1977f326c0a236dfa358de4a8a48e501 240 SUPERFAMILY SSF57863 87 169 4.97E-9 T 11-10-2018 IPR037278 ARFGAP/RecO-like zinc finger APJL_0538 1977f326c0a236dfa358de4a8a48e501 240 Pfam PF02565 Recombination protein O C terminal 85 227 1.5E-26 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APJL_0538 1977f326c0a236dfa358de4a8a48e501 240 Hamap MF_00201 DNA repair protein RecO [recO]. 2 232 24.313 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APJL_0538 1977f326c0a236dfa358de4a8a48e501 240 Pfam PF11967 Recombination protein O N terminal 1 77 5.3E-27 T 11-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal APJL_0538 1977f326c0a236dfa358de4a8a48e501 240 TIGRFAM TIGR00613 reco: DNA repair protein RecO 7 231 6.0E-48 T 11-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 APJL_0538 1977f326c0a236dfa358de4a8a48e501 240 Gene3D G3DSA:1.20.1440.120 80 239 4.3E-52 T 11-10-2018 APJL_0538 1977f326c0a236dfa358de4a8a48e501 240 Gene3D G3DSA:2.40.50.140 2 79 1.3E-34 T 11-10-2018 APJL_0538 1977f326c0a236dfa358de4a8a48e501 240 SUPERFAMILY SSF50249 5 76 1.42E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 Pfam PF13091 PLD-like domain 264 407 1.3E-17 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 Pfam PF13091 PLD-like domain 40 186 2.6E-7 T 11-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 SUPERFAMILY SSF56024 255 398 4.4E-16 T 11-10-2018 APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 SUPERFAMILY SSF56024 19 198 9.1E-26 T 11-10-2018 APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 Gene3D G3DSA:3.30.870.10 21 450 1.4E-163 T 11-10-2018 APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 PIRSF PIRSF000850 1 454 4.7E-204 T 11-10-2018 APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 Gene3D G3DSA:3.30.870.10 24 235 1.4E-163 T 11-10-2018 APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 SMART SM00155 355 382 2.3E-4 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APJL_0044 8938dcb875816f131c92ed00eb7ecd48 454 SMART SM00155 136 162 0.075 T 11-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 40.869 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 2.8E-201 T 11-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 2.5E-28 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 2.5E-28 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.5E-28 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.5E-28 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 Pfam PF00206 Lyase 6 301 2.9E-86 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.0E-66 T 11-10-2018 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.0E-66 T 11-10-2018 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.0E-66 T 11-10-2018 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.0E-66 T 11-10-2018 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.0E-66 T 11-10-2018 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.0E-66 T 11-10-2018 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 SUPERFAMILY SSF48557 3 453 6.6E-139 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 Gene3D G3DSA:1.10.40.30 363 433 4.9E-147 T 11-10-2018 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 5.8E-25 T 11-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 Gene3D G3DSA:1.20.200.10 108 446 4.9E-147 T 11-10-2018 APJL_1201 26e049a03bfb0c0cadc97dd359ef0e74 458 Gene3D G3DSA:1.10.275.10 1 107 5.6E-35 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal APJL_1505 894818e77a8d38c53297dd9ced3aa3b5 210 SUPERFAMILY SSF46689 7 80 1.8E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1505 894818e77a8d38c53297dd9ced3aa3b5 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 64 5.1E-9 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APJL_1505 894818e77a8d38c53297dd9ced3aa3b5 210 Gene3D G3DSA:1.10.10.60 5 55 1.0E-22 T 11-10-2018 APJL_1505 894818e77a8d38c53297dd9ced3aa3b5 210 Gene3D G3DSA:1.10.357.10 56 209 2.7E-31 T 11-10-2018 APJL_1505 894818e77a8d38c53297dd9ced3aa3b5 210 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 Gene3D G3DSA:3.40.50.40 236 349 2.4E-42 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 105 115 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 SUPERFAMILY SSF53774 24 348 1.28E-105 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 PIRSF PIRSF500176 23 349 2.0E-82 T 11-10-2018 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 PRINTS PR00139 Asparaginase/glutaminase family signature 27 38 9.5E-24 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 PRINTS PR00139 Asparaginase/glutaminase family signature 104 122 9.5E-24 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 PRINTS PR00139 Asparaginase/glutaminase family signature 283 301 9.5E-24 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 2 349 3.7E-159 T 11-10-2018 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 SMART SM00870 26 343 7.3E-140 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 29 37 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 Pfam PF00710 Asparaginase, N-terminal 26 216 7.1E-61 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 PIRSF PIRSF001220 21 348 1.0E-92 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0136 29a82ead61562bcbec76073f3c36ae1d 349 Gene3D G3DSA:3.40.50.1170 24 235 1.3E-83 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 APJL_1191 c7805d3cf915feaba7bb3f8c8f606f84 124 Pfam PF00436 Single-strand binding protein family 14 110 1.0E-8 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 APJL_1191 c7805d3cf915feaba7bb3f8c8f606f84 124 Hamap MF_00720 Primosomal replication protein N [priB]. 13 111 21.094 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 APJL_1191 c7805d3cf915feaba7bb3f8c8f606f84 124 Gene3D G3DSA:2.40.50.140 2 120 2.6E-29 T 11-10-2018 APJL_1191 c7805d3cf915feaba7bb3f8c8f606f84 124 SUPERFAMILY SSF50249 11 117 1.84E-27 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1191 c7805d3cf915feaba7bb3f8c8f606f84 124 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 14 111 5.5E-31 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 APJL_1191 c7805d3cf915feaba7bb3f8c8f606f84 124 PIRSF PIRSF003135 5 112 5.3E-47 T 11-10-2018 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 SUPERFAMILY SSF55021 427 508 7.2E-23 T 11-10-2018 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 11 507 3.9E-252 T 11-10-2018 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 49 62 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 25 312 2.4E-81 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 Gene3D G3DSA:3.40.50.1100 57 153 2.0E-133 T 11-10-2018 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 Gene3D G3DSA:3.40.1020.10 334 508 1.3E-65 T 11-10-2018 IPR038110 Threonine dehydratase, ACT-like domain superfamily KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 SUPERFAMILY SSF53686 13 361 1.17E-105 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 Gene3D G3DSA:3.40.50.1100 21 323 2.0E-133 T 11-10-2018 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 SUPERFAMILY SSF55021 332 418 4.12E-27 T 11-10-2018 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 325 414 2.7E-29 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APJL_1477 b54a69d0a9122e2b7b54141f70087838 508 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 424 507 4.4E-22 T 11-10-2018 IPR001721 Threonine dehydratase, ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 APJL_1301 df37b8f4fe88f71e443d9c8a47122484 117 Pfam PF13466 STAS domain 20 99 4.4E-16 T 11-10-2018 IPR002645 STAS domain APJL_1301 df37b8f4fe88f71e443d9c8a47122484 117 SUPERFAMILY SSF52091 7 106 8.63E-17 T 11-10-2018 IPR036513 STAS domain superfamily APJL_1301 df37b8f4fe88f71e443d9c8a47122484 117 Gene3D G3DSA:3.30.750.24 5 113 3.5E-11 T 11-10-2018 IPR036513 STAS domain superfamily APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Gene3D G3DSA:1.10.150.390 1316 1376 1.1E-28 T 11-10-2018 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Gene3D G3DSA:1.10.132.30 642 791 2.9E-66 T 11-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 SUPERFAMILY SSF64484 18 1365 0.0 T 11-10-2018 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 SMART SM00663 236 515 5.5E-180 T 11-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Pfam PF04998 RNA polymerase Rpb1, domain 5 767 1315 4.2E-77 T 11-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Pfam PF05000 RNA polymerase Rpb1, domain 4 675 764 2.9E-18 T 11-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Gene3D G3DSA:1.10.1790.20 1136 1314 1.3E-60 T 11-10-2018 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Gene3D G3DSA:1.10.274.100 491 641 9.9E-39 T 11-10-2018 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Gene3D G3DSA:2.40.50.100 1024 1127 1.2E-28 T 11-10-2018 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Gene3D G3DSA:1.10.40.90 375 417 4.3E-21 T 11-10-2018 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 11 1377 18.986 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Pfam PF00623 RNA polymerase Rpb1, domain 2 392 486 7.4E-26 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Pfam PF00623 RNA polymerase Rpb1, domain 2 345 394 6.0E-8 T 11-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Gene3D G3DSA:2.40.50.100 949 1023 4.3E-27 T 11-10-2018 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Pfam PF04983 RNA polymerase Rpb1, domain 3 490 645 1.7E-27 T 11-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 21 1367 0.0 T 11-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Pfam PF04997 RNA polymerase Rpb1, domain 1 17 343 6.0E-87 T 11-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1763 138718993956bfb13fcb98a0d54f34aa 1423 Gene3D G3DSA:2.40.50.100 1152 1215 1.3E-60 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 PRINTS PR01874 DNA repair protein radA signature 85 113 1.3E-93 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 PRINTS PR01874 DNA repair protein radA signature 176 200 1.3E-93 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 PRINTS PR01874 DNA repair protein radA signature 215 243 1.3E-93 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 PRINTS PR01874 DNA repair protein radA signature 126 143 1.3E-93 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 PRINTS PR01874 DNA repair protein radA signature 324 347 1.3E-93 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 PRINTS PR01874 DNA repair protein radA signature 250 276 1.3E-93 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 PRINTS PR01874 DNA repair protein radA signature 11 35 1.3E-93 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 Pfam PF13481 AAA domain 85 224 1.0E-11 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 453 8.0E-232 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 Gene3D G3DSA:3.30.230.10 320 459 2.6E-22 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 Gene3D G3DSA:3.40.50.300 68 281 5.4E-40 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 Hamap MF_01498 DNA repair protein RadA [radA]. 22 457 43.397 T 11-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 SUPERFAMILY SSF54211 257 456 6.07E-43 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 Pfam PF13541 Subunit ChlI of Mg-chelatase 347 432 2.8E-9 T 11-10-2018 APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 SMART SM00382 93 246 1.0E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0893 3f5d061254742bf1aafa7913ac18d210 459 SUPERFAMILY SSF52540 70 292 1.95E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0989 abb84b4664bf32367feec62b95890a5c 93 Gene3D G3DSA:3.30.70.1060 1 93 2.9E-33 T 11-10-2018 APJL_0989 abb84b4664bf32367feec62b95890a5c 93 SUPERFAMILY SSF54909 1 93 8.22E-29 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APJL_0989 abb84b4664bf32367feec62b95890a5c 93 Pfam PF03795 YCII-related domain 1 90 2.4E-26 T 11-10-2018 IPR005545 YCII-related APJL_0560 734cec223aa5e872c8ad954f7e051267 283 SUPERFAMILY SSF54713 142 280 6.15E-50 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 Pfam PF00889 Elongation factor TS 71 262 3.1E-65 T 11-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 11-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 SUPERFAMILY SSF54713 56 138 6.32E-21 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 Gene3D G3DSA:1.10.286.20 186 225 9.3E-24 T 11-10-2018 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 SUPERFAMILY SSF46934 3 56 4.98E-19 T 11-10-2018 IPR009060 UBA-like superfamily GO:0005515 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 Hamap MF_00050 Elongation factor Ts [tsf]. 1 279 79.401 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 Gene3D G3DSA:3.30.479.20 57 141 6.2E-28 T 11-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 Gene3D G3DSA:1.10.8.10 1 56 1.5E-27 T 11-10-2018 APJL_0560 734cec223aa5e872c8ad954f7e051267 283 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 279 1.9E-117 T 11-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APJL_1873 26ee8f2b888769964c6033bc8576c568 445 Gene3D G3DSA:1.20.1250.20 14 221 1.9E-37 T 11-10-2018 APJL_1873 26ee8f2b888769964c6033bc8576c568 445 Gene3D G3DSA:1.20.1250.20 241 444 8.6E-32 T 11-10-2018 APJL_1873 26ee8f2b888769964c6033bc8576c568 445 PIRSF PIRSF002808 3 445 5.9E-73 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 APJL_1873 26ee8f2b888769964c6033bc8576c568 445 SUPERFAMILY SSF103473 10 438 9.29E-59 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_1873 26ee8f2b888769964c6033bc8576c568 445 Pfam PF07690 Major Facilitator Superfamily 28 397 1.4E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 SUPERFAMILY SSF52540 337 506 4.79E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 Pfam PF00009 Elongation factor Tu GTP binding domain 344 501 1.4E-35 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 SUPERFAMILY SSF52156 618 748 1.96E-37 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 258 841 2.2E-293 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 Gene3D G3DSA:2.40.30.10 743 840 3.1E-34 T 11-10-2018 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 Pfam PF11987 Translation-initiation factor 2 626 731 3.6E-36 T 11-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 343 499 6.0E-31 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 SUPERFAMILY SSF50447 743 839 1.34E-34 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 ProSitePatterns PS01176 Initiation factor 2 signature. 792 814 - T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 Gene3D G3DSA:3.40.50.10050 636 742 3.0E-37 T 11-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 28 839 17.426 T 11-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 265 315 1.4E-16 T 11-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 Gene3D G3DSA:3.40.50.300 337 512 3.1E-71 T 11-10-2018 APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 SUPERFAMILY SSF50447 515 596 3.53E-24 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_0630 afad1e92cab0611ed22396ff4c6ab29d 841 Gene3D G3DSA:2.40.30.10 513 631 3.2E-40 T 11-10-2018 APJL_0491 c8a2c62c4fa0167a743670399963bf79 198 SUPERFAMILY SSF52972 3 197 4.45E-70 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APJL_0491 c8a2c62c4fa0167a743670399963bf79 198 Pfam PF01725 Ham1 family 6 194 2.9E-54 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 APJL_0491 c8a2c62c4fa0167a743670399963bf79 198 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 5 196 2.2E-67 T 11-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 APJL_0491 c8a2c62c4fa0167a743670399963bf79 198 Gene3D G3DSA:3.90.950.10 1 198 6.5E-76 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APJL_0491 c8a2c62c4fa0167a743670399963bf79 198 Hamap MF_01405 dITP/XTP pyrophosphatase. 4 198 48.955 T 11-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 SUPERFAMILY SSF55347 126 274 3.6E-61 T 11-10-2018 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 Gene3D G3DSA:3.40.50.720 1 150 5.1E-56 T 11-10-2018 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 392 45.994 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 SUPERFAMILY SSF51735 2 150 5.58E-46 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 SUPERFAMILY SSF69055 301 393 1.02E-29 T 11-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 PIRSF PIRSF006205 1 396 1.8E-153 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 5.6E-36 T 11-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 Gene3D G3DSA:1.10.1740.10 312 396 2.4E-26 T 11-10-2018 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 7.1E-47 T 11-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 387 1.1E-38 T 11-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APJL_0428 940c8bab2dbc0cd37e36ae184a812fdd 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 394 1.1E-178 T 11-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 APJL_1796 719085c7fc95a5af8c30162836fac22a 200 Gene3D G3DSA:3.40.1370.10 7 200 1.4E-68 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1796 719085c7fc95a5af8c30162836fac22a 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 12 197 5.0E-75 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1796 719085c7fc95a5af8c30162836fac22a 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 1 200 33.468 T 11-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1796 719085c7fc95a5af8c30162836fac22a 200 SUPERFAMILY SSF52166 9 199 8.11E-73 T 11-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1796 719085c7fc95a5af8c30162836fac22a 200 Pfam PF00573 Ribosomal protein L4/L1 family 12 197 1.2E-64 T 11-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 APJL_0703 0d7356d6d77b4c4ae2cd2806034a96a8 1105 Gene3D G3DSA:3.40.50.300 146 320 3.6E-8 T 11-10-2018 APJL_0703 0d7356d6d77b4c4ae2cd2806034a96a8 1105 Pfam PF04851 Type III restriction enzyme, res subunit 154 294 1.9E-10 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APJL_0703 0d7356d6d77b4c4ae2cd2806034a96a8 1105 SUPERFAMILY SSF52540 123 302 1.93E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 TIGRFAM TIGR02628 fuculo_kin_coli: L-fuculokinase 2 470 1.8E-215 T 11-10-2018 IPR013450 L-fuculokinase GO:0005975|GO:0008737 KEGG: 00051+2.7.1.51 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 Gene3D G3DSA:3.30.420.40 1 242 5.6E-63 T 11-10-2018 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 Hamap MF_00986 L-fuculokinase [fucK]. 1 470 60.784 T 11-10-2018 IPR013450 L-fuculokinase GO:0005975|GO:0008737 KEGG: 00051+2.7.1.51 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 PIRSF PIRSF000538 1 477 6.9E-83 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 260 443 1.5E-27 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 Gene3D G3DSA:3.30.420.40 243 477 2.5E-41 T 11-10-2018 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 SUPERFAMILY SSF53067 256 473 5.83E-42 T 11-10-2018 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 SUPERFAMILY SSF53067 7 253 1.3E-59 T 11-10-2018 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 4 250 1.9E-82 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APJL_1717 9fa0bcf394a55b1315d0e21ae50b354a 477 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 135 147 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_0302 63b4ee2623c53c37d3d2581f90f6a779 389 SUPERFAMILY SSF116734 189 385 2.29E-39 T 11-10-2018 APJL_0302 63b4ee2623c53c37d3d2581f90f6a779 389 Pfam PF01420 Type I restriction modification DNA specificity domain 12 172 1.4E-32 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APJL_0302 63b4ee2623c53c37d3d2581f90f6a779 389 Pfam PF01420 Type I restriction modification DNA specificity domain 192 371 1.8E-22 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APJL_0302 63b4ee2623c53c37d3d2581f90f6a779 389 SUPERFAMILY SSF116734 11 195 1.96E-35 T 11-10-2018 APJL_0302 63b4ee2623c53c37d3d2581f90f6a779 389 Gene3D G3DSA:3.90.220.20 176 386 3.1E-34 T 11-10-2018 APJL_0302 63b4ee2623c53c37d3d2581f90f6a779 389 Gene3D G3DSA:3.90.220.20 8 141 3.8E-26 T 11-10-2018 APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 Pfam PF00226 DnaJ domain 220 281 9.3E-12 T 11-10-2018 IPR001623 DnaJ domain APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 Pfam PF05099 Tellurite resistance protein TerB 54 175 4.0E-13 T 11-10-2018 IPR007791 Co-chaperone DjlA, N-terminal APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 Gene3D G3DSA:1.10.3680.10 39 189 1.2E-19 T 11-10-2018 IPR029024 TerB-like APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 SUPERFAMILY SSF46565 135 281 7.01E-28 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 PRINTS PR00625 DnaJ domain signature 222 240 3.0E-8 T 11-10-2018 IPR001623 DnaJ domain APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 PRINTS PR00625 DnaJ domain signature 264 284 3.0E-8 T 11-10-2018 IPR001623 DnaJ domain APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 PRINTS PR00625 DnaJ domain signature 240 255 3.0E-8 T 11-10-2018 IPR001623 DnaJ domain APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 285 38.221 T 11-10-2018 IPR023749 Co-chaperone DjlA GO:0051087 APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 SMART SM00271 219 284 2.9E-17 T 11-10-2018 IPR001623 DnaJ domain APJL_0319 6c6093855b90a7b4761e1eadf8b4b35d 286 Gene3D G3DSA:1.10.287.110 192 284 3.1E-15 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APJL_0186 b2903a3390dffc15de5374251eab512c 353 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 12 352 3.0E-155 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APJL_0186 b2903a3390dffc15de5374251eab512c 353 Pfam PF00793 DAHP synthetase I family 49 344 5.8E-99 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APJL_0186 b2903a3390dffc15de5374251eab512c 353 SUPERFAMILY SSF51569 12 351 6.8E-132 T 11-10-2018 APJL_0186 b2903a3390dffc15de5374251eab512c 353 Gene3D G3DSA:3.20.20.70 7 353 5.4E-153 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0186 b2903a3390dffc15de5374251eab512c 353 PIRSF PIRSF001361 1 353 3.8E-158 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 7 301 2.3E-101 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 6 303 35.909 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 Gene3D G3DSA:3.30.1490.20 114 181 4.4E-73 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 Pfam PF01820 D-ala D-ala ligase N-terminus 7 89 6.6E-18 T 11-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 245 273 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 Pfam PF07478 D-ala D-ala ligase C-terminus 106 300 3.6E-63 T 11-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 SUPERFAMILY SSF52440 6 99 5.08E-29 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 Gene3D G3DSA:3.30.470.20 88 298 4.4E-73 T 11-10-2018 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 SUPERFAMILY SSF56059 100 299 1.04E-52 T 11-10-2018 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 66 77 - T 11-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 PIRSF PIRSF039102 44 303 9.9E-87 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 PIRSF PIRSF039102 3 49 2.0E-10 T 11-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0021 a94715d6fbdf9f326d8637a58798d23c 303 Gene3D G3DSA:3.40.50.20 4 87 6.8E-30 T 11-10-2018 APJL_1033 1eec176ad6519e324c7ecf023dd566f3 258 Pfam PF01791 DeoC/LacD family aldolase 10 240 3.7E-42 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 APJL_1033 1eec176ad6519e324c7ecf023dd566f3 258 SUPERFAMILY SSF51569 10 245 4.08E-81 T 11-10-2018 APJL_1033 1eec176ad6519e324c7ecf023dd566f3 258 Gene3D G3DSA:3.20.20.70 1 258 1.1E-99 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1033 1eec176ad6519e324c7ecf023dd566f3 258 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 227 4.8E-75 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 APJL_1033 1eec176ad6519e324c7ecf023dd566f3 258 SMART SM01133 9 245 1.0E-79 T 11-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 APJL_1033 1eec176ad6519e324c7ecf023dd566f3 258 PIRSF PIRSF001357 4 254 5.0E-75 T 11-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 APJL_1033 1eec176ad6519e324c7ecf023dd566f3 258 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 258 51.885 T 11-10-2018 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 Gene3D G3DSA:3.50.50.60 7 410 3.9E-158 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 Pfam PF02910 Fumarate reductase flavoprotein C-term 454 580 7.9E-41 T 11-10-2018 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 SUPERFAMILY SSF56425 227 359 3.74E-39 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 PIRSF PIRSF000171 1 577 9.3E-46 T 11-10-2018 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 Gene3D G3DSA:3.90.700.10 237 364 3.9E-158 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 Pfam PF00890 FAD binding domain 7 398 6.7E-112 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 Gene3D G3DSA:1.20.58.100 425 541 3.5E-35 T 11-10-2018 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 SUPERFAMILY SSF51905 2 423 4.58E-75 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 361 383 5.8E-11 T 11-10-2018 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.8E-11 T 11-10-2018 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 Gene3D G3DSA:4.10.80.40 542 576 7.3E-18 T 11-10-2018 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 5 581 0.0 T 11-10-2018 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 SUPERFAMILY SSF46977 445 594 1.06E-48 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 580 4.1E-236 T 11-10-2018 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 376 383 2.2E-6 T 11-10-2018 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 2.2E-6 T 11-10-2018 APJL_1556 bc145bc256308efb36e78f7c6952ceb7 599 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 11-10-2018 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1829 b758dd6274e297fc29d18796834a8d4c 255 Pfam PF00005 ABC transporter 18 162 1.4E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1829 b758dd6274e297fc29d18796834a8d4c 255 SUPERFAMILY SSF52540 2 225 4.1E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1829 b758dd6274e297fc29d18796834a8d4c 255 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1829 b758dd6274e297fc29d18796834a8d4c 255 SMART SM00382 26 212 5.3E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1829 b758dd6274e297fc29d18796834a8d4c 255 Gene3D G3DSA:3.40.50.300 1 247 7.5E-61 T 11-10-2018 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 Pfam PF09179 TilS substrate binding domain 241 308 1.4E-19 T 11-10-2018 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 Pfam PF01171 PP-loop family 20 192 4.5E-58 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 SUPERFAMILY SSF52402 12 225 2.21E-63 T 11-10-2018 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 SUPERFAMILY SSF82829 227 311 3.79E-23 T 11-10-2018 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 Gene3D G3DSA:1.20.59.20 226 311 2.4E-21 T 11-10-2018 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 3 300 24.31 T 11-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 20 195 4.7E-56 T 11-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 SUPERFAMILY SSF56037 316 418 8.37E-17 T 11-10-2018 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 Pfam PF11734 TilS substrate C-terminal domain 385 417 1.6E-8 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 375 412 3.7E-6 T 11-10-2018 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 APJL_1568 6f6080733a5b8b5e9fb4c781eef0ef63 419 Gene3D G3DSA:3.40.50.620 8 225 2.9E-70 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 SUPERFAMILY SSF52518 314 500 4.77E-59 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 7 616 45.425 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 ProSitePatterns PS00801 Transketolase signature 1. 33 52 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 SMART SM00861 316 480 1.3E-70 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 Gene3D G3DSA:3.40.50.920 491 616 3.3E-38 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 Gene3D G3DSA:3.40.50.970 314 488 2.7E-70 T 11-10-2018 APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 Pfam PF02779 Transketolase, pyrimidine binding domain 317 477 2.4E-42 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 Pfam PF02780 Transketolase, C-terminal domain 491 607 1.4E-21 T 11-10-2018 IPR033248 Transketolase, C-terminal domain APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 8 614 1.1E-301 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 8 280 4.7E-120 T 11-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 SUPERFAMILY SSF52922 488 616 4.57E-27 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 ProSitePatterns PS00802 Transketolase signature 2. 422 438 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_0208 4178d75227b82780d5c11381e4f3cdd8 617 SUPERFAMILY SSF52518 5 378 4.33E-79 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_1370 7e9dcd8f9109c09a43f0405b72836634 223 Gene3D G3DSA:1.10.3720.10 1 218 2.0E-47 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1370 7e9dcd8f9109c09a43f0405b72836634 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 6 110 1.0E-15 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APJL_1370 7e9dcd8f9109c09a43f0405b72836634 223 SUPERFAMILY SSF161098 7 201 1.05E-34 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1370 7e9dcd8f9109c09a43f0405b72836634 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 47 216 2.6E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 Pfam PF01938 TRAM domain 365 427 3.6E-21 T 11-10-2018 IPR002792 TRAM domain APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 Pfam PF00919 Uncharacterized protein family UPF0004 1 91 8.2E-23 T 11-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 SMART SM00729 134 354 1.1E-62 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 1 427 72.119 T 11-10-2018 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 1 424 3.1E-149 T 11-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 138 158 - T 11-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 Pfam PF04055 Radical SAM superfamily 138 311 1.0E-27 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 Gene3D G3DSA:3.80.30.20 132 364 6.5E-83 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 SUPERFAMILY SSF102114 116 359 5.36E-62 T 11-10-2018 APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 Gene3D G3DSA:3.40.50.12160 1 118 2.2E-27 T 11-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily APJL_1339 e7ba406a9bfaa8797087bcc68c859ca5 463 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 1 427 6.9E-198 T 11-10-2018 APJL_0309 d697c325bee26287f06bb9e711cc98b8 378 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 360 1.9E-107 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APJL_0309 d697c325bee26287f06bb9e711cc98b8 378 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 378 5.1E-177 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APJL_0309 d697c325bee26287f06bb9e711cc98b8 378 PIRSF PIRSF000267 2 376 4.5E-128 T 11-10-2018 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 APJL_0436 3b6a1ad0e0dfed52ac7e79ccb2e6837e 437 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 206 252 2.5E-7 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APJL_0436 3b6a1ad0e0dfed52ac7e79ccb2e6837e 437 Pfam PF02163 Peptidase family M50 6 425 7.1E-80 T 11-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 APJL_0436 3b6a1ad0e0dfed52ac7e79ccb2e6837e 437 SUPERFAMILY SSF50156 187 281 1.2E-16 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APJL_0436 3b6a1ad0e0dfed52ac7e79ccb2e6837e 437 Gene3D G3DSA:2.30.42.10 216 296 9.3E-17 T 11-10-2018 APJL_0436 3b6a1ad0e0dfed52ac7e79ccb2e6837e 437 SUPERFAMILY SSF50156 85 169 3.42E-6 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APJL_0436 3b6a1ad0e0dfed52ac7e79ccb2e6837e 437 SMART SM00228 205 271 6.0E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APJL_0436 3b6a1ad0e0dfed52ac7e79ccb2e6837e 437 Gene3D G3DSA:2.30.42.10 120 213 8.8E-23 T 11-10-2018 APJL_0436 3b6a1ad0e0dfed52ac7e79ccb2e6837e 437 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 1 435 1.8E-123 T 11-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 APJL_0573 7d24f524d7995a2b583253ffda1d8ff7 237 Gene3D G3DSA:1.10.10.2250 1 81 5.9E-38 T 11-10-2018 APJL_0573 7d24f524d7995a2b583253ffda1d8ff7 237 Gene3D G3DSA:1.10.10.2260 87 195 1.3E-42 T 11-10-2018 APJL_0573 7d24f524d7995a2b583253ffda1d8ff7 237 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 9 235 45.687 T 11-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 APJL_0573 7d24f524d7995a2b583253ffda1d8ff7 237 Pfam PF04288 MukE-like family 10 235 1.4E-116 T 11-10-2018 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 Pfam PF11940 Domain of unknown function (DUF3458) Ig-like fold 444 545 1.4E-29 T 11-10-2018 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 Pfam PF01433 Peptidase family M1 domain 208 439 8.8E-63 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 10 868 0.0 T 11-10-2018 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 Gene3D G3DSA:2.60.40.1730 13 194 6.1E-68 T 11-10-2018 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 Gene3D G3DSA:1.10.1740.60 195 279 4.6E-41 T 11-10-2018 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 Gene3D G3DSA:2.60.40.1840 444 546 1.9E-28 T 11-10-2018 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 SUPERFAMILY SSF55486 204 450 4.03E-77 T 11-10-2018 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 126 141 3.7E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 294 309 3.7E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 313 325 3.7E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 176 191 3.7E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 258 268 3.7E-9 T 11-10-2018 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 Gene3D G3DSA:1.25.50.10 547 869 3.5E-109 T 11-10-2018 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 SUPERFAMILY SSF63737 2 193 3.92E-45 T 11-10-2018 APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 Pfam PF17432 Domain of unknown function (DUF3458_C) ARM repeats 550 869 1.8E-112 T 11-10-2018 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal APJL_1358 6db39eb27b539d6e14a0784e466fc3da 869 Gene3D G3DSA:1.10.390.10 280 443 3.1E-65 T 11-10-2018 IPR027268 Peptidase M4/M1, CTD superfamily APJL_1384 d3feb19484f4301626ea259fc4010e06 435 SUPERFAMILY SSF53850 8 218 3.26E-29 T 11-10-2018 APJL_1384 d3feb19484f4301626ea259fc4010e06 435 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 260 288 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 APJL_1384 d3feb19484f4301626ea259fc4010e06 435 SUPERFAMILY SSF53955 240 414 1.23E-32 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APJL_1384 d3feb19484f4301626ea259fc4010e06 435 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 3 217 9.8E-26 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APJL_1384 d3feb19484f4301626ea259fc4010e06 435 Gene3D G3DSA:3.40.190.10 2 214 3.2E-50 T 11-10-2018 APJL_1384 d3feb19484f4301626ea259fc4010e06 435 Pfam PF01464 Transglycosylase SLT domain 248 351 3.2E-21 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 APJL_1384 d3feb19484f4301626ea259fc4010e06 435 Gene3D G3DSA:1.10.530.10 237 419 1.2E-29 T 11-10-2018 APJL_1384 d3feb19484f4301626ea259fc4010e06 435 Gene3D G3DSA:3.40.190.10 81 175 3.2E-50 T 11-10-2018 APJL_1384 d3feb19484f4301626ea259fc4010e06 435 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 1 426 42.335 T 11-10-2018 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 APJL_1384 d3feb19484f4301626ea259fc4010e06 435 SMART SM00062 7 219 5.0E-26 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APJL_1487 fc90f8dd7135b3e12430473d754585a5 355 Pfam PF13439 Glycosyltransferase Family 4 13 132 9.1E-11 T 11-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 APJL_1487 fc90f8dd7135b3e12430473d754585a5 355 Gene3D G3DSA:3.40.50.2000 162 340 4.4E-47 T 11-10-2018 APJL_1487 fc90f8dd7135b3e12430473d754585a5 355 SUPERFAMILY SSF53756 3 352 2.25E-56 T 11-10-2018 APJL_1487 fc90f8dd7135b3e12430473d754585a5 355 Gene3D G3DSA:3.40.50.2000 14 349 4.4E-47 T 11-10-2018 APJL_1487 fc90f8dd7135b3e12430473d754585a5 355 Pfam PF00534 Glycosyl transferases group 1 178 324 1.1E-23 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APJL_0933 b8a3f7bc6807e11f0027e79a886ec83e 64 Pfam PF04384 Iron-sulphur cluster assembly 1 63 1.9E-30 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 APJL_0933 b8a3f7bc6807e11f0027e79a886ec83e 64 PIRSF PIRSF039003 1 64 4.9E-29 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 APJL_0933 b8a3f7bc6807e11f0027e79a886ec83e 64 Gene3D G3DSA:1.10.10.600 1 64 4.2E-28 T 11-10-2018 IPR036762 IscX-like superfamily APJL_0933 b8a3f7bc6807e11f0027e79a886ec83e 64 SUPERFAMILY SSF140319 1 63 1.19E-24 T 11-10-2018 IPR036762 IscX-like superfamily APJL_0933 b8a3f7bc6807e11f0027e79a886ec83e 64 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 2 63 3.9E-29 T 11-10-2018 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 APJL_2056 bb2548f64418910fc2a2f746913ec9dd 130 Pfam PF03603 DNA polymerase III psi subunit 1 119 9.5E-27 T 11-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_2056 bb2548f64418910fc2a2f746913ec9dd 130 PIRSF PIRSF029225 1 124 1.2E-29 T 11-10-2018 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_2056 bb2548f64418910fc2a2f746913ec9dd 130 SUPERFAMILY SSF102220 17 128 2.09E-26 T 11-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_2056 bb2548f64418910fc2a2f746913ec9dd 130 Gene3D G3DSA:3.40.50.10220 22 130 5.9E-12 T 11-10-2018 IPR036654 DNA polymerase III, psi subunit superfamily GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1508 f171245e73322da1d2cb3d177211b919 262 Pfam PF00872 Transposase, Mutator family 71 167 4.5E-5 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 APJL_2081 f171245e73322da1d2cb3d177211b919 262 Pfam PF00872 Transposase, Mutator family 71 167 4.5E-5 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 APJL_1473 f171245e73322da1d2cb3d177211b919 262 Pfam PF00872 Transposase, Mutator family 71 167 4.5E-5 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 APJL_0406 f171245e73322da1d2cb3d177211b919 262 Pfam PF00872 Transposase, Mutator family 71 167 4.5E-5 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 APJL_1421 f171245e73322da1d2cb3d177211b919 262 Pfam PF00872 Transposase, Mutator family 71 167 4.5E-5 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 APJL_0429 f171245e73322da1d2cb3d177211b919 262 Pfam PF00872 Transposase, Mutator family 71 167 4.5E-5 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 APJL_1651 a384482559b19b8182be63bc0b7fac13 100 Pfam PF00547 Urease, gamma subunit 1 99 1.1E-46 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1651 a384482559b19b8182be63bc0b7fac13 100 SUPERFAMILY SSF54111 1 100 1.7E-45 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1651 a384482559b19b8182be63bc0b7fac13 100 PIRSF PIRSF001223 1 100 1.5E-49 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1651 a384482559b19b8182be63bc0b7fac13 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 8.0E-47 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1651 a384482559b19b8182be63bc0b7fac13 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 100 1.9E-57 T 11-10-2018 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1651 a384482559b19b8182be63bc0b7fac13 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.161 T 11-10-2018 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1651 a384482559b19b8182be63bc0b7fac13 100 Gene3D G3DSA:3.30.280.10 1 100 2.6E-46 T 11-10-2018 IPR036463 Urease, gamma subunit superfamily GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_0212 9b0f910fb09153715e313a48a64d7353 421 PIRSF PIRSF000412 1 421 2.4E-165 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APJL_0212 9b0f910fb09153715e313a48a64d7353 421 Gene3D G3DSA:3.40.640.10 37 289 4.8E-182 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0212 9b0f910fb09153715e313a48a64d7353 421 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 420 51.13 T 11-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APJL_0212 9b0f910fb09153715e313a48a64d7353 421 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 11-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APJL_0212 9b0f910fb09153715e313a48a64d7353 421 SUPERFAMILY SSF53383 4 419 6.33E-175 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0212 9b0f910fb09153715e313a48a64d7353 421 Gene3D G3DSA:3.90.1150.10 10 396 4.8E-182 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0212 9b0f910fb09153715e313a48a64d7353 421 Pfam PF00464 Serine hydroxymethyltransferase 8 386 2.9E-184 T 11-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 APJL_0688 fe291f37ba845926df985c621b750898 340 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 32 43 - T 11-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_0688 fe291f37ba845926df985c621b750898 340 Pfam PF13353 4Fe-4S single cluster domain 35 136 7.0E-10 T 11-10-2018 APJL_0688 fe291f37ba845926df985c621b750898 340 SUPERFAMILY SSF102114 17 298 4.05E-67 T 11-10-2018 APJL_0688 fe291f37ba845926df985c621b750898 340 Pfam PF06463 Molybdenum Cofactor Synthesis C 197 323 2.5E-39 T 11-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_0688 fe291f37ba845926df985c621b750898 340 Gene3D G3DSA:3.20.20.70 14 340 1.1E-82 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0688 fe291f37ba845926df985c621b750898 340 SMART SM00729 26 230 1.7E-4 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APJL_0688 fe291f37ba845926df985c621b750898 340 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 17 340 2.7E-103 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_0688 fe291f37ba845926df985c621b750898 340 Pfam PF04055 Radical SAM superfamily 31 191 8.8E-26 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_0688 fe291f37ba845926df985c621b750898 340 Hamap MF_01225_B GTP 3',8-cyclase [moaA]. 17 340 36.84 T 11-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_1234 3116a4b268bd31d695e23dd4356489d7 158 Gene3D G3DSA:3.90.960.10 1 158 1.6E-61 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APJL_1234 3116a4b268bd31d695e23dd4356489d7 158 Pfam PF04073 Aminoacyl-tRNA editing domain 31 146 4.9E-25 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APJL_1234 3116a4b268bd31d695e23dd4356489d7 158 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 155 1.5E-55 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC APJL_1234 3116a4b268bd31d695e23dd4356489d7 158 SUPERFAMILY SSF55826 2 155 2.49E-46 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APJL_1234 3116a4b268bd31d695e23dd4356489d7 158 PIRSF PIRSF006181 1 158 9.8E-57 T 11-10-2018 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 Gene3D G3DSA:3.40.50.1220 221 345 1.3E-36 T 11-10-2018 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 431 544 1.1E-7 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 4 562 31.124 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 184 7.5E-32 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 SUPERFAMILY SSF52518 4 196 1.66E-35 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 439 1.1E-137 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 Gene3D G3DSA:3.40.50.970 369 565 8.8E-54 T 11-10-2018 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 Gene3D G3DSA:3.40.50.970 1 200 3.2E-57 T 11-10-2018 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 PIRSF PIRSF004983 1 568 2.4E-171 T 11-10-2018 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 Pfam PF16582 Middle domain of thiamine pyrophosphate 190 397 1.0E-79 T 11-10-2018 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 APJL_1785 7c1aafd32a79dc97904d03744cacd7a1 568 SUPERFAMILY SSF52518 373 562 3.33E-30 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0080 64cc38bd4e2332b856c61bf8b7031594 281 Pfam PF14559 Tetratricopeptide repeat 122 189 5.7E-15 T 11-10-2018 APJL_0080 64cc38bd4e2332b856c61bf8b7031594 281 SUPERFAMILY SSF48452 104 248 1.14E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0080 64cc38bd4e2332b856c61bf8b7031594 281 Pfam PF00085 Thioredoxin 6 101 1.3E-10 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 APJL_0080 64cc38bd4e2332b856c61bf8b7031594 281 Pfam PF14561 Tetratricopeptide repeat 194 281 3.8E-23 T 11-10-2018 APJL_0080 64cc38bd4e2332b856c61bf8b7031594 281 SUPERFAMILY SSF52833 4 110 3.85E-22 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0080 64cc38bd4e2332b856c61bf8b7031594 281 Gene3D G3DSA:1.25.40.10 196 281 4.7E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0080 64cc38bd4e2332b856c61bf8b7031594 281 Gene3D G3DSA:1.25.40.10 110 195 1.9E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0080 64cc38bd4e2332b856c61bf8b7031594 281 Gene3D G3DSA:3.40.30.10 2 109 5.7E-17 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 260 274 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 303 310 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 341 362 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 5.1E-66 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 Gene3D G3DSA:3.50.50.60 5 324 2.4E-116 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 3 456 2.1E-210 T 11-10-2018 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 SUPERFAMILY SSF51905 3 377 1.3E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 Gene3D G3DSA:3.50.50.60 149 266 2.4E-116 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 Gene3D G3DSA:3.30.390.30 344 456 7.8E-49 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 345 455 1.1E-36 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 SUPERFAMILY SSF55424 342 456 1.22E-37 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PIRSF PIRSF000350 1 452 2.9E-90 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 324 6.9E-64 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 275 1.5E-27 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 1.5E-27 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 288 310 1.5E-27 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.5E-27 T 11-10-2018 APJL_1255 79ad9cde49626aa13f12ae3cc5e38482 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 1.5E-27 T 11-10-2018 APJL_1039 ddadf6c001e85da5785cbd29c2c64ce2 492 Gene3D G3DSA:2.60.40.1180 376 480 5.0E-12 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APJL_1039 ddadf6c001e85da5785cbd29c2c64ce2 492 SUPERFAMILY SSF51011 294 374 2.37E-19 T 11-10-2018 APJL_1039 ddadf6c001e85da5785cbd29c2c64ce2 492 Gene3D G3DSA:2.60.40.1180 326 375 8.4E-15 T 11-10-2018 IPR013780 Glycosyl hydrolase, all-beta APJL_1039 ddadf6c001e85da5785cbd29c2c64ce2 492 Pfam PF17137 Domain of unknown function (DUF5110) 397 463 1.2E-9 T 11-10-2018 IPR033403 Domain of unknown function DUF5110 APJL_1039 ddadf6c001e85da5785cbd29c2c64ce2 492 Gene3D G3DSA:3.20.20.80 3 323 1.3E-95 T 11-10-2018 APJL_1039 ddadf6c001e85da5785cbd29c2c64ce2 492 SUPERFAMILY SSF51445 14 289 5.42E-60 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APJL_1039 ddadf6c001e85da5785cbd29c2c64ce2 492 Pfam PF01055 Glycosyl hydrolases family 31 11 379 8.8E-101 T 11-10-2018 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 APJL_0161 1284256b25750ee9cb995c214fbb4175 276 PIRSF PIRSF000193 7 275 7.8E-77 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APJL_0161 1284256b25750ee9cb995c214fbb4175 276 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 9 103 2.1E-21 T 11-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal APJL_0161 1284256b25750ee9cb995c214fbb4175 276 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 10 272 3.8E-75 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APJL_0161 1284256b25750ee9cb995c214fbb4175 276 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 228 250 - T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APJL_0161 1284256b25750ee9cb995c214fbb4175 276 Gene3D G3DSA:1.10.3730.10 169 276 2.3E-36 T 11-10-2018 APJL_0161 1284256b25750ee9cb995c214fbb4175 276 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 8 272 25.904 T 11-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APJL_0161 1284256b25750ee9cb995c214fbb4175 276 Gene3D G3DSA:3.40.50.720 5 168 5.8E-52 T 11-10-2018 APJL_0161 1284256b25750ee9cb995c214fbb4175 276 SUPERFAMILY SSF51735 9 164 1.71E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0161 1284256b25750ee9cb995c214fbb4175 276 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 167 272 1.0E-31 T 11-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 APJL_0161 1284256b25750ee9cb995c214fbb4175 276 SUPERFAMILY SSF48179 166 275 3.74E-31 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_0698 a86be2203a59439b8321ce988a7fc2e5 364 SUPERFAMILY SSF53383 17 363 7.56E-83 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0698 a86be2203a59439b8321ce988a7fc2e5 364 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 363 61.596 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APJL_0698 a86be2203a59439b8321ce988a7fc2e5 364 Gene3D G3DSA:3.90.1150.10 24 356 7.6E-115 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0698 a86be2203a59439b8321ce988a7fc2e5 364 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 223 236 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APJL_0698 a86be2203a59439b8321ce988a7fc2e5 364 Pfam PF00155 Aminotransferase class I and II 34 352 2.5E-55 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APJL_0698 a86be2203a59439b8321ce988a7fc2e5 364 Gene3D G3DSA:3.40.640.10 47 271 7.6E-115 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0698 a86be2203a59439b8321ce988a7fc2e5 364 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 9 361 4.2E-119 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 PIRSF PIRSF038928 2 487 1.8E-218 T 11-10-2018 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 SMART SM01060 12 396 9.9E-282 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 Pfam PF00199 Catalase 12 393 2.0E-186 T 11-10-2018 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 ProSitePatterns PS00438 Catalase proximal active site signature. 48 64 - T 11-10-2018 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 PRINTS PR00067 Catalase signature 25 48 3.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 PRINTS PR00067 Catalase signature 128 146 3.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 PRINTS PR00067 Catalase signature 109 126 3.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 PRINTS PR00067 Catalase signature 293 320 3.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 PRINTS PR00067 Catalase signature 88 106 3.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 PRINTS PR00067 Catalase signature 325 351 3.7E-69 T 11-10-2018 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 Pfam PF06628 Catalase-related immune-responsive 420 481 8.0E-20 T 11-10-2018 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 Gene3D G3DSA:2.40.180.10 8 490 4.7E-222 T 11-10-2018 IPR037060 Catalase core domain superfamily GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 338 346 - T 11-10-2018 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1005 f49f34eba2299eb34b3536e745314a88 508 SUPERFAMILY SSF56634 8 493 5.1E-211 T 11-10-2018 IPR020835 Catalase superfamily GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-6798695|Reactome: R-HSA-9033241 APJL_1465 71eee18c590eafb59eb8a1359fb20029 266 Pfam PF13276 HTH-like domain 35 88 1.5E-15 T 11-10-2018 IPR025948 HTH-like domain APJL_1465 71eee18c590eafb59eb8a1359fb20029 266 Pfam PF00665 Integrase core domain 111 226 2.3E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_1465 71eee18c590eafb59eb8a1359fb20029 266 SUPERFAMILY SSF53098 106 265 2.28E-34 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1465 71eee18c590eafb59eb8a1359fb20029 266 Gene3D G3DSA:3.30.420.10 107 261 1.0E-9 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1650 e4353550e441d8d39d44b2cf381f64b8 101 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 101 2.5E-52 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1650 e4353550e441d8d39d44b2cf381f64b8 101 Gene3D G3DSA:2.10.150.10 1 101 7.8E-49 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1650 e4353550e441d8d39d44b2cf381f64b8 101 SUPERFAMILY SSF51278 1 101 2.35E-48 T 11-10-2018 IPR036461 Urease, beta subunit superfamily KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1650 e4353550e441d8d39d44b2cf381f64b8 101 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.934 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1650 e4353550e441d8d39d44b2cf381f64b8 101 Pfam PF00699 Urease beta subunit 3 99 4.4E-45 T 11-10-2018 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 Pfam PF02814 UreE urease accessory protein, N-terminal domain 28 86 3.6E-14 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 Hamap MF_00822 Urease accessory protein UreE [ureE]. 14 165 19.394 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 Pfam PF05194 UreE urease accessory protein, C-terminal domain 95 178 4.6E-16 T 11-10-2018 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0016151|GO:0019627|GO:0065003 APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 SMART SM00988 19 87 3.4E-12 T 11-10-2018 IPR004029 UreE urease accessory, N-terminal APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 Gene3D G3DSA:3.30.70.790 92 179 3.9E-23 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 SUPERFAMILY SSF69287 15 91 2.88E-14 T 11-10-2018 IPR036118 UreE urease accessory, N-terminal domain superfamily APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 SUPERFAMILY SSF69737 93 159 2.75E-14 T 11-10-2018 IPR036675 UreE, C-terminal domain superfamily GO:0016151|GO:0019627|GO:0065003 APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 Gene3D G3DSA:2.60.260.20 15 91 2.1E-18 T 11-10-2018 APJL_1647 49a3a03ebc6f190e53f382cf2a5b34f1 192 PIRSF PIRSF036402 14 184 9.6E-44 T 11-10-2018 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 APJL_2019 5c079e9e991f28e37eeabdfa864ed390 56 SUPERFAMILY SSF57829 3 54 4.52E-20 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 APJL_2019 5c079e9e991f28e37eeabdfa864ed390 56 Pfam PF00471 Ribosomal protein L33 8 54 2.5E-19 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2019 5c079e9e991f28e37eeabdfa864ed390 56 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 56 2.4E-28 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2019 5c079e9e991f28e37eeabdfa864ed390 56 ProSitePatterns PS00582 Ribosomal protein L33 signature. 22 41 - T 11-10-2018 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_2019 5c079e9e991f28e37eeabdfa864ed390 56 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 6 54 15.257 T 11-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2019 5c079e9e991f28e37eeabdfa864ed390 56 Gene3D G3DSA:2.20.28.120 1 56 9.4E-30 T 11-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 185 1.6E-56 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 6.2E-5 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 6.2E-5 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 Gene3D G3DSA:3.40.50.880 1 192 8.5E-60 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00097 Anthranilate synthase component II signature 52 61 2.7E-34 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00097 Anthranilate synthase component II signature 124 136 2.7E-34 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00097 Anthranilate synthase component II signature 79 90 2.7E-34 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00097 Anthranilate synthase component II signature 166 179 2.7E-34 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00097 Anthranilate synthase component II signature 4 18 2.7E-34 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00097 Anthranilate synthase component II signature 104 112 2.7E-34 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 SUPERFAMILY SSF52317 1 192 1.36E-47 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 4.4E-13 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 4.4E-13 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 4.4E-13 T 11-10-2018 APJL_1184 b5742db0c5770cadf1c656d51df29069 195 Pfam PF00117 Glutamine amidotransferase class-I 6 186 2.4E-47 T 11-10-2018 IPR017926 Glutamine amidotransferase APJL_1553 47cf382f6a35de7b0d85e7493ef068c2 114 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 1 114 25.513 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 APJL_1553 47cf382f6a35de7b0d85e7493ef068c2 114 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 1 114 2.0E-44 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 APJL_1553 47cf382f6a35de7b0d85e7493ef068c2 114 Gene3D G3DSA:1.20.1300.10 1 114 8.1E-37 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1553 47cf382f6a35de7b0d85e7493ef068c2 114 SUPERFAMILY SSF81343 1 114 6.32E-48 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1553 47cf382f6a35de7b0d85e7493ef068c2 114 PIRSF PIRSF000179 1 114 1.6E-47 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 APJL_1553 47cf382f6a35de7b0d85e7493ef068c2 114 Pfam PF02313 Fumarate reductase subunit D 6 112 1.7E-41 T 11-10-2018 IPR003418 Fumarate reductase, subunit D GO:0006106|GO:0016020 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 10 217 4.4E-80 T 11-10-2018 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 PRINTS PR00151 Porphobilinogen deaminase signature 147 164 1.2E-50 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 PRINTS PR00151 Porphobilinogen deaminase signature 234 251 1.2E-50 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 PRINTS PR00151 Porphobilinogen deaminase signature 80 99 1.2E-50 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 PRINTS PR00151 Porphobilinogen deaminase signature 49 69 1.2E-50 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 PRINTS PR00151 Porphobilinogen deaminase signature 128 145 1.2E-50 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 10 301 2.9E-116 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 PIRSF PIRSF001438 1 314 5.6E-123 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 SUPERFAMILY SSF54782 224 313 3.92E-28 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 Gene3D G3DSA:3.30.160.40 225 310 1.5E-29 T 11-10-2018 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 230 299 6.9E-22 T 11-10-2018 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 Gene3D G3DSA:3.40.190.10 107 206 1.8E-85 T 11-10-2018 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 Gene3D G3DSA:3.40.190.10 10 214 1.8E-85 T 11-10-2018 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 9 301 39.416 T 11-10-2018 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 SUPERFAMILY SSF53850 9 223 2.08E-87 T 11-10-2018 APJL_1028 c10bfc1a06c73ee422d34a0ed37c5f7b 314 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 235 251 - T 11-10-2018 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 PIRSF PIRSF006076 1 793 2.8E-231 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Gene3D G3DSA:3.10.20.310 172 261 7.9E-24 T 11-10-2018 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 793 23.953 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Gene3D G3DSA:2.40.160.50 422 793 1.2E-142 T 11-10-2018 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 20 793 5.3E-259 T 11-10-2018 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Pfam PF01103 Surface antigen 445 793 3.5E-93 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Gene3D G3DSA:3.10.20.310 262 343 6.9E-14 T 11-10-2018 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Gene3D G3DSA:3.10.20.310 15 87 9.8E-15 T 11-10-2018 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Gene3D G3DSA:3.10.20.310 88 168 2.9E-14 T 11-10-2018 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Pfam PF07244 Surface antigen variable number repeat 344 418 2.9E-12 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Pfam PF07244 Surface antigen variable number repeat 172 259 3.2E-15 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Pfam PF07244 Surface antigen variable number repeat 90 168 9.6E-11 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Pfam PF07244 Surface antigen variable number repeat 262 341 8.0E-9 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APJL_0435 8fcc2b46b530bc6edaddddc47d7f1689 793 Gene3D G3DSA:3.10.20.310 344 421 1.7E-20 T 11-10-2018 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SMART SM01058 482 579 3.8E-47 T 11-10-2018 IPR003711 CarD-like/TRCF domain APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SUPERFAMILY SSF141259 473 551 9.94E-23 T 11-10-2018 IPR036101 CarD-like/TRCF domain superfamily APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SUPERFAMILY SSF52540 785 993 5.32E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SMART SM00487 603 793 9.0E-37 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Pfam PF03461 TRCF domain 1012 1104 1.9E-27 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 149 1084 0.0 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SUPERFAMILY SSF52540 526 786 9.46E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Gene3D G3DSA:3.40.50.300 481 992 6.7E-235 T 11-10-2018 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Gene3D G3DSA:3.90.1150.50 1007 1149 4.2E-42 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SUPERFAMILY SSF52540 355 468 6.64E-24 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SMART SM00982 1011 1111 7.9E-52 T 11-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Gene3D G3DSA:3.40.50.11180 27 336 1.5E-118 T 11-10-2018 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Pfam PF00270 DEAD/DEAH box helicase 608 768 2.1E-20 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SMART SM00490 829 913 9.7E-16 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Gene3D G3DSA:3.40.50.11140 357 455 2.3E-26 T 11-10-2018 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SUPERFAMILY SSF143517 998 1148 1.44E-43 T 11-10-2018 IPR037235 TRCF-like, C-terminal domain APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Gene3D G3DSA:2.30.30.840 486 544 6.7E-235 T 11-10-2018 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Gene3D G3DSA:3.40.50.300 545 784 6.7E-235 T 11-10-2018 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Pfam PF00271 Helicase conserved C-terminal domain 808 912 1.8E-15 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Gene3D G3DSA:3.30.2060.10 131 216 1.5E-118 T 11-10-2018 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 38 1112 27.857 T 11-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 Pfam PF02559 CarD-like/TRCF domain 483 578 6.0E-25 T 11-10-2018 IPR003711 CarD-like/TRCF domain APJL_1357 ce60f826ed40a3f0b20adc672a6a8d1a 1149 SUPERFAMILY SSF52540 15 344 1.18E-101 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1939 df5e7195a02bbf6d1b9c49c8b727475c 263 Pfam PF01925 Sulfite exporter TauE/SafE 9 260 4.3E-47 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 PIRSF PIRSF001435 1 184 3.3E-43 T 11-10-2018 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 Hamap MF_00942 Endonuclease III [nth]. 1 195 30.038 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 Gene3D G3DSA:1.10.340.30 21 132 1.3E-64 T 11-10-2018 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 SMART SM00478 38 184 7.6E-54 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 SUPERFAMILY SSF48150 3 179 1.02E-57 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 Gene3D G3DSA:1.10.1670.10 11 179 1.3E-64 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 8.0E-21 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 TIGRFAM TIGR01083 nth: endonuclease III 4 178 5.7E-80 T 11-10-2018 IPR005759 Endonuclease III GO:0003906|GO:0006284 APJL_0898 edda41f02fc6e58f8d5449edadc8c243 199 Pfam PF00633 Helix-hairpin-helix motif 100 127 1.1E-6 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 PRINTS PR00481 Cytosol aminopeptidase signature 273 293 2.2E-41 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 PRINTS PR00481 Cytosol aminopeptidase signature 214 235 2.2E-41 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 PRINTS PR00481 Cytosol aminopeptidase signature 251 272 2.2E-41 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 PRINTS PR00481 Cytosol aminopeptidase signature 301 316 2.2E-41 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 PRINTS PR00481 Cytosol aminopeptidase signature 192 209 2.2E-41 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 277 284 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 PIRSF PIRSF036388 1 430 9.7E-222 T 11-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 SUPERFAMILY SSF53187 102 429 2.07E-97 T 11-10-2018 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 Gene3D G3DSA:3.40.630.10 90 430 3.4E-102 T 11-10-2018 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 106 423 1.8E-99 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APJL_0409 ede490db28e38a5755ec87cd70c40318 430 Pfam PF12404 Peptidase 4 77 8.6E-33 T 11-10-2018 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.0E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 2.0E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 2.0E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 2.0E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 2.0E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.0E-22 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 Gene3D G3DSA:3.40.50.720 3 236 1.7E-60 T 11-10-2018 APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 1.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 1.4E-8 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 SUPERFAMILY SSF51735 1 225 9.18E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0495 a5ecd8737c815504f294169f38a2c586 249 Pfam PF00106 short chain dehydrogenase 2 188 2.8E-52 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0495 a5ecd8737c815504f294169f38a2c586 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 9.1E-10 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 9.1E-10 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 Pfam PF01926 50S ribosome-binding GTPase 219 337 1.7E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 Pfam PF01926 50S ribosome-binding GTPase 5 119 2.4E-27 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 SUPERFAMILY SSF52540 191 479 1.03E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 394 472 4.1E-25 T 11-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 Gene3D G3DSA:3.30.300.20 393 475 6.4E-19 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 3 158 5.9E-21 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 216 383 3.7E-25 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 Gene3D G3DSA:3.40.50.300 1 160 3.3E-43 T 11-10-2018 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 SMART SM00382 1 141 1.7 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 SMART SM00382 216 363 0.43 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 SUPERFAMILY SSF52540 4 164 6.07E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 Gene3D G3DSA:3.40.50.300 212 388 4.7E-49 T 11-10-2018 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 473 1.9E-176 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 PIRSF PIRSF006485 1 481 3.1E-185 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 APJL_0424 bb1db5fcf88c744f6b058234f169c219 506 Hamap MF_00195 GTPase Der [der]. 2 476 38.57 T 11-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 APJL_1401 350e8e04d3a0807b21ebfb0c51f27948 250 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 58 248 1.7E-71 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 APJL_1401 350e8e04d3a0807b21ebfb0c51f27948 250 SUPERFAMILY SSF53335 26 248 9.91E-40 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1401 350e8e04d3a0807b21ebfb0c51f27948 250 Pfam PF02390 Putative methyltransferase 73 244 2.6E-59 T 11-10-2018 APJL_1401 350e8e04d3a0807b21ebfb0c51f27948 250 Gene3D G3DSA:3.40.50.150 40 250 4.8E-67 T 11-10-2018 APJL_1401 350e8e04d3a0807b21ebfb0c51f27948 250 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 34 249 30.008 T 11-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 APJL_1991 c13e8b6793e4f1f94203f535bcfe32fa 242 SUPERFAMILY SSF56214 102 226 2.79E-17 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APJL_1991 c13e8b6793e4f1f94203f535bcfe32fa 242 SUPERFAMILY SSF56214 20 91 1.01E-11 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APJL_1991 c13e8b6793e4f1f94203f535bcfe32fa 242 Gene3D G3DSA:3.90.470.20 26 122 1.1E-14 T 11-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APJL_1991 c13e8b6793e4f1f94203f535bcfe32fa 242 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 102 175 9.1E-9 T 11-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 APJL_0151 210faa4ee934fcd8e5000b2d47816f0a 449 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 449 1.5E-196 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 APJL_0151 210faa4ee934fcd8e5000b2d47816f0a 449 Pfam PF11973 NQRA C-terminal domain 265 313 3.5E-23 T 11-10-2018 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 APJL_0151 210faa4ee934fcd8e5000b2d47816f0a 449 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 449 46.212 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 APJL_0151 210faa4ee934fcd8e5000b2d47816f0a 449 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 260 3.7E-116 T 11-10-2018 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 Gene3D G3DSA:1.10.8.60 326 399 6.2E-28 T 11-10-2018 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 SMART SM00382 186 326 8.1E-24 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 Gene3D G3DSA:2.40.50.920 24 100 3.5E-15 T 11-10-2018 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 607 35.822 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 323 3.7E-44 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 Gene3D G3DSA:1.20.58.760 400 595 2.2E-68 T 11-10-2018 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 ProSitePatterns PS00674 AAA-protein family signature. 294 312 - T 11-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 Gene3D G3DSA:3.40.50.300 138 325 8.0E-69 T 11-10-2018 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 Pfam PF01434 Peptidase family M41 384 587 1.3E-70 T 11-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 Pfam PF06480 FtsH Extracellular 5 84 1.8E-10 T 11-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 SUPERFAMILY SSF52540 144 394 2.68E-69 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 102 589 3.2E-228 T 11-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 APJL_0589 4a4cac9f9256410e3c2fdc74ba90e9f9 640 SUPERFAMILY SSF140990 406 596 2.75E-67 T 11-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 Pfam PF01750 Hydrogenase maturation protease 20 143 1.2E-29 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 PRINTS PR00446 Hydrogen uptake protein signature 67 83 4.1E-17 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 PRINTS PR00446 Hydrogen uptake protein signature 15 26 4.1E-17 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 PRINTS PR00446 Hydrogen uptake protein signature 35 52 4.1E-17 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 PRINTS PR00446 Hydrogen uptake protein signature 3 15 4.1E-17 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 PRINTS PR00446 Hydrogen uptake protein signature 56 66 4.1E-17 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 4 147 4.0E-42 T 11-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 SUPERFAMILY SSF53163 1 153 2.01E-41 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily APJL_1353 8bf43f113de6437c924aaaf1d6341f9d 165 Gene3D G3DSA:3.40.50.1450 1 154 1.1E-39 T 11-10-2018 IPR023430 Peptidase HybD-like domain superfamily APJL_1806 21832f73e052529d5149bb25d3fcce65 103 SUPERFAMILY SSF50104 4 102 6.62E-32 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APJL_1806 21832f73e052529d5149bb25d3fcce65 103 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 11-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1806 21832f73e052529d5149bb25d3fcce65 103 Gene3D G3DSA:2.30.30.30 2 103 3.4E-37 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 APJL_1806 21832f73e052529d5149bb25d3fcce65 103 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 18.972 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1806 21832f73e052529d5149bb25d3fcce65 103 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 103 2.0E-22 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1806 21832f73e052529d5149bb25d3fcce65 103 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 3.5E-39 T 11-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1806 21832f73e052529d5149bb25d3fcce65 103 SMART SM00739 4 31 5.4E-4 T 11-10-2018 IPR005824 KOW APJL_0934 9997e71ddec27efddb408865e821002b 113 Gene3D G3DSA:3.10.20.30 1 113 1.8E-39 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_0934 9997e71ddec27efddb408865e821002b 113 SUPERFAMILY SSF54292 5 108 4.26E-30 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APJL_0934 9997e71ddec27efddb408865e821002b 113 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 2.3E-61 T 11-10-2018 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 APJL_0934 9997e71ddec27efddb408865e821002b 113 PRINTS PR00355 Adrenodoxin signature 83 91 2.6E-11 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 APJL_0934 9997e71ddec27efddb408865e821002b 113 PRINTS PR00355 Adrenodoxin signature 60 74 2.6E-11 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 APJL_0934 9997e71ddec27efddb408865e821002b 113 PRINTS PR00355 Adrenodoxin signature 42 52 2.6E-11 T 11-10-2018 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 APJL_0934 9997e71ddec27efddb408865e821002b 113 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 11-10-2018 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 APJL_0934 9997e71ddec27efddb408865e821002b 113 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 91 4.9E-14 T 11-10-2018 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 569 585 - T 11-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 Pfam PF03600 Citrate transporter 27 208 6.7E-33 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 Gene3D G3DSA:3.30.70.1450 334 408 1.1E-11 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 SUPERFAMILY SSF116726 330 404 1.96E-13 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 SUPERFAMILY SSF116726 242 298 1.96E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 Gene3D G3DSA:3.30.70.1450 226 309 2.0E-12 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 Pfam PF02080 TrkA-C domain 242 299 3.2E-8 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 Pfam PF02080 TrkA-C domain 335 398 1.5E-8 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APJL_1660 3bac707dc7bd75503fdd9ed10030093f 621 Pfam PF03600 Citrate transporter 438 615 1.5E-21 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 Pfam PF00696 Amino acid kinase family 23 254 1.9E-23 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 6 435 2.8E-173 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 PIRSF PIRSF000423 1 435 1.2E-195 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 SUPERFAMILY SSF53633 3 285 3.8E-63 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 SUPERFAMILY SSF55729 290 415 1.6E-15 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 Gene3D G3DSA:3.40.630.30 287 435 1.7E-36 T 11-10-2018 APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 Gene3D G3DSA:3.40.1160.10 5 286 7.3E-80 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 Pfam PF00583 Acetyltransferase (GNAT) family 329 395 1.4E-5 T 11-10-2018 IPR000182 GNAT domain APJL_0696 4f08519ccfe0e0527f7f85aa246d508f 437 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 435 208.81 T 11-10-2018 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 APJL_0919 c1254e5541ecbf3df34ba49260c1a0e3 380 Gene3D G3DSA:1.10.10.800 198 307 5.5E-100 T 11-10-2018 APJL_0919 c1254e5541ecbf3df34ba49260c1a0e3 380 Gene3D G3DSA:3.40.50.1820 65 362 5.5E-100 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0919 c1254e5541ecbf3df34ba49260c1a0e3 380 SUPERFAMILY SSF53474 25 380 8.7E-49 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0919 c1254e5541ecbf3df34ba49260c1a0e3 380 Pfam PF02129 X-Pro dipeptidyl-peptidase (S15 family) 71 201 2.3E-7 T 11-10-2018 IPR000383 Xaa-Pro dipeptidyl-peptidase-like domain GO:0016787 APJL_0247 dc94c42c26d0ff042c6fa4c1f70c3e5b 317 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 3 305 2.3E-107 T 11-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_0247 dc94c42c26d0ff042c6fa4c1f70c3e5b 317 SUPERFAMILY SSF55347 115 287 1.8E-32 T 11-10-2018 APJL_0247 dc94c42c26d0ff042c6fa4c1f70c3e5b 317 Gene3D G3DSA:3.40.50.720 1 118 2.1E-17 T 11-10-2018 APJL_0247 dc94c42c26d0ff042c6fa4c1f70c3e5b 317 SUPERFAMILY SSF51735 3 130 7.71E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0247 dc94c42c26d0ff042c6fa4c1f70c3e5b 317 Gene3D G3DSA:3.30.360.10 119 291 7.0E-30 T 11-10-2018 APJL_0247 dc94c42c26d0ff042c6fa4c1f70c3e5b 317 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 45 98 2.1E-7 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APJL_0247 dc94c42c26d0ff042c6fa4c1f70c3e5b 317 SMART SM00859 5 104 1.1E-12 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APJL_0247 dc94c42c26d0ff042c6fa4c1f70c3e5b 317 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 306 50.285 T 11-10-2018 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_0503 bf0d3cb764b5c627792252147afc43ad 213 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 37 195 3.1E-53 T 11-10-2018 IPR004564 Outer membrane lipoprotein carrier protein LolA-like APJL_0503 bf0d3cb764b5c627792252147afc43ad 213 SUPERFAMILY SSF89392 28 206 2.04E-53 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX APJL_0503 bf0d3cb764b5c627792252147afc43ad 213 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 8 206 1.6E-79 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 APJL_0503 bf0d3cb764b5c627792252147afc43ad 213 Gene3D G3DSA:2.50.20.10 23 206 5.5E-49 T 11-10-2018 APJL_0503 bf0d3cb764b5c627792252147afc43ad 213 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 12 205 31.093 T 11-10-2018 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 APJL_0802 2eb73f4165166446c5f65c230bfee896 565 Gene3D G3DSA:3.10.105.10 321 536 1.8E-113 T 11-10-2018 APJL_0802 2eb73f4165166446c5f65c230bfee896 565 PIRSF PIRSF002741 12 563 5.0E-78 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_0802 2eb73f4165166446c5f65c230bfee896 565 Gene3D G3DSA:3.40.190.10 245 548 1.8E-113 T 11-10-2018 APJL_0802 2eb73f4165166446c5f65c230bfee896 565 SUPERFAMILY SSF53850 39 558 2.9E-98 T 11-10-2018 APJL_0802 2eb73f4165166446c5f65c230bfee896 565 Gene3D G3DSA:3.90.76.10 49 244 1.8E-113 T 11-10-2018 APJL_0802 2eb73f4165166446c5f65c230bfee896 565 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 477 1.9E-66 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APJL_0017 741b3eb67e5240a29e1fea7490701607 436 Pfam PF08245 Mur ligase middle domain 111 278 1.4E-24 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 SUPERFAMILY SSF53623 96 293 1.18E-51 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 Pfam PF02875 Mur ligase family, glutamate ligase domain 299 365 9.9E-8 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 Gene3D G3DSA:3.90.190.20 298 431 6.7E-43 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 Gene3D G3DSA:3.40.50.720 3 94 7.7E-25 T 11-10-2018 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 SUPERFAMILY SSF51984 4 95 9.94E-21 T 11-10-2018 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 10 432 2.2E-131 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 SUPERFAMILY SSF53244 297 433 1.69E-45 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 Gene3D G3DSA:3.40.1190.10 95 297 4.8E-64 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0017 741b3eb67e5240a29e1fea7490701607 436 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 8 434 34.052 T 11-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_0197 32ef621278fbdebf96425ce69506fe05 226 ProDom PD123385 COMPETENCE COMA A DNA TRANSFORMATION 17 181 3.0E-7 T 11-10-2018 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 Gene3D G3DSA:1.10.238.260 280 392 3.2E-32 T 11-10-2018 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 500 5.3E-30 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 SMART SM00917 369 501 6.5E-36 T 11-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 Pfam PF00682 HMGL-like 4 273 1.2E-102 T 11-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 11 27 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 Gene3D G3DSA:3.30.160.270 394 502 1.4E-13 T 11-10-2018 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 498 1.8E-246 T 11-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 1 510 42.154 T 11-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 Gene3D G3DSA:3.20.20.70 1 277 4.7E-104 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 198 211 - T 11-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 SUPERFAMILY SSF51569 2 291 3.48E-98 T 11-10-2018 APJL_0414 ef9b600008ef1012fb3ebb6ac13e4e76 513 SUPERFAMILY SSF110921 406 500 9.68E-24 T 11-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 332 400 7.2E-6 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 SUPERFAMILY SSF52540 3 438 2.11E-89 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 SMART SM00382 48 329 4.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 Pfam PF07724 AAA domain (Cdc48 subfamily) 179 326 1.1E-42 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 SMART SM01086 332 426 1.2E-20 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 440 42.523 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 Gene3D G3DSA:1.10.8.60 332 437 4.4E-40 T 11-10-2018 APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 3 440 2.7E-222 T 11-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 APJL_1771 8eb8331e4265588af3553aeab1f429f5 440 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 52 101 9.1E-7 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 SUPERFAMILY SSF55200 70 159 1.01E-33 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 71 157 2.1E-36 T 11-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 Gene3D G3DSA:3.10.20.80 1 63 4.5E-29 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 159 27.27 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 2 159 4.5E-72 T 11-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 1 64 5.3E-29 T 11-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 SUPERFAMILY SSF54364 2 66 3.79E-26 T 11-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 Gene3D G3DSA:3.30.110.10 64 159 2.6E-39 T 11-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 APJL_0224 5bf14cb94645fb84f678fa1fc26b4118 159 ProSitePatterns PS00938 Initiation factor 3 signature. 46 59 - T 11-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 APJL_0579 7bf0bf855c863b6f926856509d44da53 401 Gene3D G3DSA:2.40.420.20 291 380 5.1E-60 T 11-10-2018 APJL_0579 7bf0bf855c863b6f926856509d44da53 401 Pfam PF00529 HlyD membrane-fusion protein of T1SS 23 370 2.8E-8 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APJL_0579 7bf0bf855c863b6f926856509d44da53 401 Gene3D G3DSA:2.40.50.100 79 207 5.1E-60 T 11-10-2018 APJL_0579 7bf0bf855c863b6f926856509d44da53 401 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 56 382 6.8E-66 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APJL_0579 7bf0bf855c863b6f926856509d44da53 401 SUPERFAMILY SSF111369 70 284 2.75E-36 T 11-10-2018 APJL_0579 7bf0bf855c863b6f926856509d44da53 401 Gene3D G3DSA:1.10.287.470 114 173 5.1E-60 T 11-10-2018 APJL_0579 7bf0bf855c863b6f926856509d44da53 401 Gene3D G3DSA:2.40.30.170 68 290 5.1E-60 T 11-10-2018 APJL_0579 7bf0bf855c863b6f926856509d44da53 401 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 67 280 3.0E-26 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APJL_0904 0231632752367313a027322707786e19 195 Gene3D G3DSA:2.20.25.90 38 108 1.5E-17 T 11-10-2018 APJL_0904 0231632752367313a027322707786e19 195 Gene3D G3DSA:3.40.50.740 109 195 4.9E-31 T 11-10-2018 APJL_0904 0231632752367313a027322707786e19 195 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 44 104 5.8E-19 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_0904 0231632752367313a027322707786e19 195 SUPERFAMILY SSF53706 35 193 1.02E-51 T 11-10-2018 APJL_0904 0231632752367313a027322707786e19 195 SMART SM00926 43 104 9.1E-23 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1659 7844770e5e5bd422945ea77554482243 153 Gene3D G3DSA:3.10.450.50 28 146 6.4E-11 T 11-10-2018 APJL_1659 7844770e5e5bd422945ea77554482243 153 SUPERFAMILY SSF54427 36 128 1.02E-9 T 11-10-2018 IPR032710 NTF2-like domain superfamily APJL_1659 7844770e5e5bd422945ea77554482243 153 Pfam PF14534 Domain of unknown function (DUF4440) 42 106 9.3E-8 T 11-10-2018 IPR027843 Domain of unknown function DUF4440 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 Gene3D G3DSA:2.40.50.140 574 658 5.8E-27 T 11-10-2018 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 TIGRFAM TIGR02062 RNase_B: exoribonuclease II 1 657 5.0E-297 T 11-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 6 658 1.5E-214 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 Hamap MF_01036 Exoribonuclease 2 [rnb]. 1 658 41.726 T 11-10-2018 IPR011804 Ribonuclease II GO:0003723|GO:0006401|GO:0008859 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 Pfam PF00773 RNB domain 189 530 9.9E-90 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 SUPERFAMILY SSF50249 82 171 1.03E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 SUPERFAMILY SSF50249 578 657 7.04E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 SUPERFAMILY SSF50249 188 570 3.43E-104 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 Pfam PF08206 Ribonuclease B OB domain 24 70 1.7E-15 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 SMART SM00955 189 532 2.8E-117 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 SUPERFAMILY SSF50249 8 79 4.25E-12 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 SMART SM00316 574 658 0.013 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 SMART SM00316 17 77 19.0 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 Gene3D G3DSA:2.40.50.640 82 155 4.7E-24 T 11-10-2018 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 Pfam PF00575 S1 RNA binding domain 579 657 1.1E-9 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 Gene3D G3DSA:2.40.50.140 1 81 7.5E-25 T 11-10-2018 APJL_0759 4f256183026df07c6d22cbd0a2268f08 658 SMART SM00357 23 78 3.3E-9 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APJL_1547 a5c3d2e32fafec1bd87a40ad8ac88f45 82 Gene3D G3DSA:1.10.150.250 1 82 1.3E-25 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily APJL_1547 a5c3d2e32fafec1bd87a40ad8ac88f45 82 SUPERFAMILY SSF109910 3 78 2.48E-24 T 11-10-2018 IPR036714 Flavinator of succinate dehydrogenase superfamily APJL_1547 a5c3d2e32fafec1bd87a40ad8ac88f45 82 Pfam PF03937 Flavinator of succinate dehydrogenase 7 76 3.2E-22 T 11-10-2018 IPR005631 Flavinator of succinate dehydrogenase APJL_0124 4dc34f3a44d72504bb17778c89b1e305 209 SUPERFAMILY SSF56281 5 209 1.31E-50 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APJL_0124 4dc34f3a44d72504bb17778c89b1e305 209 Pfam PF00753 Metallo-beta-lactamase superfamily 12 192 3.4E-29 T 11-10-2018 IPR001279 Metallo-beta-lactamase APJL_0124 4dc34f3a44d72504bb17778c89b1e305 209 SMART SM00849 13 192 6.0E-31 T 11-10-2018 IPR001279 Metallo-beta-lactamase APJL_0124 4dc34f3a44d72504bb17778c89b1e305 209 Gene3D G3DSA:3.60.15.10 2 209 1.8E-67 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APJL_1105 5a35fd05b1d69f58e6e7c4c88909231a 134 Pfam PF03960 ArsC family 7 115 1.8E-19 T 11-10-2018 IPR006660 Arsenate reductase-like APJL_1105 5a35fd05b1d69f58e6e7c4c88909231a 134 Gene3D G3DSA:3.40.30.10 1 133 6.4E-51 T 11-10-2018 APJL_1105 5a35fd05b1d69f58e6e7c4c88909231a 134 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 4 115 7.2E-39 T 11-10-2018 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 APJL_1105 5a35fd05b1d69f58e6e7c4c88909231a 134 SUPERFAMILY SSF52833 3 132 1.55E-35 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0984 b60ebd0ae758277cf3f1b3ca6daedf93 192 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 186 15.939 T 11-10-2018 IPR007336 Der GTPase activator GO:0005096 APJL_0984 b60ebd0ae758277cf3f1b3ca6daedf93 192 Pfam PF04220 Der GTPase activator (YihI) 32 183 2.4E-54 T 11-10-2018 IPR007336 Der GTPase activator GO:0005096 APJL_0683 2d5336ebb59d27162557e0dd9ea91f4f 361 Gene3D G3DSA:3.40.50.150 178 358 2.1E-54 T 11-10-2018 APJL_0683 2d5336ebb59d27162557e0dd9ea91f4f 361 Pfam PF01728 FtsJ-like methyltransferase 188 327 8.9E-8 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 APJL_0683 2d5336ebb59d27162557e0dd9ea91f4f 361 PIRSF PIRSF028774 1 361 4.0E-180 T 11-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 APJL_0683 2d5336ebb59d27162557e0dd9ea91f4f 361 SUPERFAMILY SSF53335 187 287 3.38E-12 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0683 2d5336ebb59d27162557e0dd9ea91f4f 361 Gene3D G3DSA:3.30.2300.20 80 177 1.3E-35 T 11-10-2018 APJL_0683 2d5336ebb59d27162557e0dd9ea91f4f 361 Gene3D G3DSA:3.30.70.2810 1 79 3.0E-32 T 11-10-2018 APJL_0683 2d5336ebb59d27162557e0dd9ea91f4f 361 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 358 84.71 T 11-10-2018 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 21 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 SUPERFAMILY SSF52374 5 340 1.02E-97 T 11-10-2018 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 205 215 1.8E-29 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 1.8E-29 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 1.8E-29 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 1.8E-29 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 4 340 1.3E-117 T 11-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 341 43.026 T 11-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 Gene3D G3DSA:1.10.240.10 196 308 1.2E-139 T 11-10-2018 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 Pfam PF00579 tRNA synthetases class I (W and Y) 4 295 3.9E-88 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1935 7278ac08abf238bcfd8b8d69e8353b74 342 Gene3D G3DSA:3.40.50.620 6 339 1.2E-139 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1783 b9577524d0eed3e580068d8b21a5fb74 364 SUPERFAMILY SSF56925 196 357 2.75E-6 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_1783 b9577524d0eed3e580068d8b21a5fb74 364 Gene3D G3DSA:2.40.160.90 227 364 8.2E-7 T 11-10-2018 APJL_2060 b3a7e1824d9681f4c954554a54507412 545 SUPERFAMILY SSF53850 40 540 2.87E-158 T 11-10-2018 APJL_2060 b3a7e1824d9681f4c954554a54507412 545 Gene3D G3DSA:3.40.190.10 221 532 3.5E-202 T 11-10-2018 APJL_2060 b3a7e1824d9681f4c954554a54507412 545 PIRSF PIRSF002741 1 544 5.7E-125 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_2060 b3a7e1824d9681f4c954554a54507412 545 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 89 111 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site APJL_2060 b3a7e1824d9681f4c954554a54507412 545 Gene3D G3DSA:3.90.76.10 54 220 3.5E-202 T 11-10-2018 APJL_2060 b3a7e1824d9681f4c954554a54507412 545 Gene3D G3DSA:3.10.105.10 302 519 3.5E-202 T 11-10-2018 APJL_2060 b3a7e1824d9681f4c954554a54507412 545 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 464 9.5E-108 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APJL_0690 595d8d66be90e38cfec0d00c80a7976a 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 1.3E-23 T 11-10-2018 APJL_0690 595d8d66be90e38cfec0d00c80a7976a 81 SUPERFAMILY SSF54285 1 81 1.87E-22 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APJL_0690 595d8d66be90e38cfec0d00c80a7976a 81 Gene3D G3DSA:3.10.20.30 1 81 9.1E-26 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_0690 595d8d66be90e38cfec0d00c80a7976a 81 Pfam PF02597 ThiS family 4 81 2.9E-22 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 425 443 1.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 404 1.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 462 1.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 418 1.1E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 304 1.8E-9 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 463 8.6E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 SUPERFAMILY SSF47384 231 306 2.16E-12 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 SUPERFAMILY SSF55874 297 463 1.2E-33 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 Pfam PF00672 HAMP domain 191 241 6.7E-10 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 Gene3D G3DSA:3.30.565.10 311 464 3.0E-34 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 SMART SM00304 190 244 6.3E-7 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 SMART SM00388 245 307 1.3E-10 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 Gene3D G3DSA:1.10.287.130 194 309 7.7E-31 T 11-10-2018 APJL_0622 f3b2e8c8258575827c5b32b2291d82ca 466 SMART SM00387 355 465 2.1E-26 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_0016 bd30c117f4555ea78e5f72c0b899181e 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.213 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0016 bd30c117f4555ea78e5f72c0b899181e 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 9.3E-6 T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0016 bd30c117f4555ea78e5f72c0b899181e 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0016 bd30c117f4555ea78e5f72c0b899181e 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 360 4.4E-155 T 11-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0016 bd30c117f4555ea78e5f72c0b899181e 360 Pfam PF00953 Glycosyl transferase family 4 99 283 1.0E-35 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 APJL_0016 bd30c117f4555ea78e5f72c0b899181e 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 11-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 Hamap MF_01254 L-fucose isomerase [fucI]. 5 588 70.339 T 11-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 Pfam PF02952 L-fucose isomerase, C-terminal domain 388 552 3.3E-54 T 11-10-2018 IPR015888 L-fucose isomerase, C-terminal GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 Gene3D G3DSA:3.40.50.1070 4 177 1.8E-88 T 11-10-2018 IPR038391 L-fucose isomerase, domain 1 superfamily KEGG: 00051+5.3.1.25 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 SUPERFAMILY SSF50443 358 588 8.89E-124 T 11-10-2018 IPR004216 L-fucose/L-arabinose isomerase, C-terminal APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 SUPERFAMILY SSF53743 8 357 5.75E-153 T 11-10-2018 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily GO:0005737|GO:0005996|GO:0016861 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 Gene3D G3DSA:3.40.275.10 178 342 4.7E-79 T 11-10-2018 IPR038392 L-fucose isomerase, domain 2 superfamily KEGG: 00051+5.3.1.25 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 TIGRFAM TIGR01089 fucI: L-fucose isomerase 10 588 0.0 T 11-10-2018 IPR005763 L-fucose isomerase GO:0005737|GO:0008736|GO:0019317|GO:0030145 KEGG: 00051+5.3.1.25 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 Pfam PF07882 L-fucose isomerase, second N-terminal domain 177 356 2.7E-91 T 11-10-2018 IPR012889 L-fucose isomerase, N-terminal-2 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 Gene3D G3DSA:3.20.14.10 343 588 5.9E-126 T 11-10-2018 IPR038393 L-fucose isomerase, domain 3 superfamily KEGG: 00051+5.3.1.25 APJL_1716 34a0916c5bda1451f80c467f3af542e4 588 Pfam PF07881 L-fucose isomerase, first N-terminal domain 10 176 9.7E-81 T 11-10-2018 IPR012888 L-fucose isomerase, N-terminal-1 GO:0005737|GO:0006004|GO:0008736 KEGG: 00051+5.3.1.25 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 282 38.089 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 284 1.3E-145 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 Gene3D G3DSA:3.90.226.10 26 287 2.7E-90 T 11-10-2018 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 252 261 3.3E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 130 144 3.3E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 230 241 3.3E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 201 218 3.3E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 164 182 3.3E-39 T 11-10-2018 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 SUPERFAMILY SSF52096 26 284 9.38E-91 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_0626 bdd5104256d7cc2d35cd94868f5db843 297 Pfam PF01039 Carboxyl transferase domain 98 241 4.9E-16 T 11-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 APJL_0930 923191291404265ab67f7ab28851e9a7 790 Gene3D G3DSA:2.170.130.10 42 161 1.1E-19 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APJL_0930 923191291404265ab67f7ab28851e9a7 790 Pfam PF00593 TonB dependent receptor 332 789 2.3E-37 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APJL_0930 923191291404265ab67f7ab28851e9a7 790 SUPERFAMILY SSF56935 56 790 5.19E-79 T 11-10-2018 APJL_0930 923191291404265ab67f7ab28851e9a7 790 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 151 8.3E-9 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 SUPERFAMILY SSF48592 322 526 2.44E-32 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 Gene3D G3DSA:1.10.560.10 8 522 9.8E-240 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 Gene3D G3DSA:3.50.7.10 192 372 9.8E-240 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 528 1.9E-253 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 SUPERFAMILY SSF52029 185 376 4.04E-83 T 11-10-2018 IPR027409 GroEL-like apical domain superfamily APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.85 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 SUPERFAMILY SSF48592 3 230 1.96E-66 T 11-10-2018 IPR027413 GroEL-like equatorial domain superfamily APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 PRINTS PR00298 60kDa chaperonin signature 398 419 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 PRINTS PR00298 60kDa chaperonin signature 83 110 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 PRINTS PR00298 60kDa chaperonin signature 350 375 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 PRINTS PR00298 60kDa chaperonin signature 27 53 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 PRINTS PR00298 60kDa chaperonin signature 268 291 8.2E-75 T 11-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 1.0E-95 T 11-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 APJL_1030 a471e5f1de4e2214b0bb82ee02bad7da 547 Gene3D G3DSA:3.30.260.10 136 410 9.8E-240 T 11-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 Pfam PF00330 Aconitase family (aconitate hydratase) 7 458 2.8E-156 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 1 467 59.327 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 119 132 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 400 413 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 133 148 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 286 300 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 343 354 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 195 208 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 209 222 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 82 95 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 PRINTS PR00415 Aconitase family signature 108 116 2.2E-50 T 11-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 Gene3D G3DSA:3.30.499.20 4 286 7.4E-97 T 11-10-2018 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 Gene3D G3DSA:3.30.499.10 328 469 1.5E-50 T 11-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 ProSitePatterns PS01244 Aconitase family signature 2. 400 413 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 SUPERFAMILY SSF53732 2 467 7.06E-166 T 11-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 ProSitePatterns PS00450 Aconitase family signature 1. 339 355 - T 11-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 APJL_0140 db0c9ad294dfa1adac3f8a1db34e4eb1 469 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 1 466 1.0E-275 T 11-10-2018 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 9 166 40.137 T 11-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 5 75 1.8E-8 T 11-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 87 167 1.1E-33 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 86 165 3.5E-34 T 11-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 SUPERFAMILY SSF46767 85 168 1.96E-32 T 11-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 136 142 - T 11-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 Gene3D G3DSA:3.30.160.70 4 79 2.0E-15 T 11-10-2018 APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 Gene3D G3DSA:1.10.10.10 84 167 7.6E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0944 ade6ec232aed0e3033aeef797ec3bab0 187 SUPERFAMILY SSF53155 5 90 1.9E-14 T 11-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 APJL_1637 5d86596cd49ec8f314f5f6d5c4a4eb53 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 50 212 6.0E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1637 5d86596cd49ec8f314f5f6d5c4a4eb53 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 5 106 1.8E-21 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APJL_1637 5d86596cd49ec8f314f5f6d5c4a4eb53 217 SUPERFAMILY SSF161098 5 213 5.49E-41 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1637 5d86596cd49ec8f314f5f6d5c4a4eb53 217 Gene3D G3DSA:1.10.3720.10 1 214 2.1E-47 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1909 123158bed4e23874ba8ed73904140db3 363 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 205 360 8.1E-42 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 APJL_1909 123158bed4e23874ba8ed73904140db3 363 Gene3D G3DSA:3.90.550.10 2 197 2.8E-49 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1909 123158bed4e23874ba8ed73904140db3 363 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 5 194 28.005 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 APJL_1909 123158bed4e23874ba8ed73904140db3 363 Pfam PF12804 MobA-like NTP transferase domain 9 163 1.7E-29 T 11-10-2018 IPR025877 MobA-like NTP transferase APJL_1909 123158bed4e23874ba8ed73904140db3 363 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 205 336 1.2E-44 T 11-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 APJL_1909 123158bed4e23874ba8ed73904140db3 363 Gene3D G3DSA:3.40.50.300 205 357 2.6E-53 T 11-10-2018 APJL_1909 123158bed4e23874ba8ed73904140db3 363 Gene3D G3DSA:2.20.25.120 248 280 2.6E-53 T 11-10-2018 APJL_1909 123158bed4e23874ba8ed73904140db3 363 SUPERFAMILY SSF53448 7 191 1.28E-29 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1909 123158bed4e23874ba8ed73904140db3 363 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 7 192 1.1E-69 T 11-10-2018 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 KEGG: 00790+2.7.7.77|MetaCyc: PWY-5964|MetaCyc: PWY-7639 APJL_1909 123158bed4e23874ba8ed73904140db3 363 SUPERFAMILY SSF52540 202 361 1.23E-22 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1273 0dfe914130f7a04ccb9b142458646186 128 SUPERFAMILY SSF46955 1 126 1.25E-35 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APJL_1273 0dfe914130f7a04ccb9b142458646186 128 Pfam PF00376 MerR family regulatory protein 2 39 9.4E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APJL_1273 0dfe914130f7a04ccb9b142458646186 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.1E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APJL_1273 0dfe914130f7a04ccb9b142458646186 128 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 2.1E-7 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APJL_1273 0dfe914130f7a04ccb9b142458646186 128 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APJL_1273 0dfe914130f7a04ccb9b142458646186 128 Pfam PF09278 MerR, DNA binding 44 106 4.6E-19 T 11-10-2018 IPR015358 Transcription regulator MerR, DNA binding APJL_1273 0dfe914130f7a04ccb9b142458646186 128 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 1.6E-44 T 11-10-2018 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 APJL_1273 0dfe914130f7a04ccb9b142458646186 128 Gene3D G3DSA:1.10.1660.10 1 125 2.2E-33 T 11-10-2018 APJL_1273 0dfe914130f7a04ccb9b142458646186 128 SMART SM00422 1 70 3.8E-26 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APJL_1820 d31633abd97191c40087fece5ea5700c 329 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 316 2.0E-111 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 245 308 6.6E-24 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 Gene3D G3DSA:1.10.150.20 244 329 9.0E-39 T 11-10-2018 APJL_1820 d31633abd97191c40087fece5ea5700c 329 SUPERFAMILY SSF56553 53 178 6.67E-41 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 SMART SM00662 23 234 8.6E-107 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 256 329 2.0E-36 T 11-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 317 34.755 T 11-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 228 2.7E-24 T 11-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 SUPERFAMILY SSF47789 251 325 1.18E-25 T 11-10-2018 APJL_1820 d31633abd97191c40087fece5ea5700c 329 Gene3D G3DSA:2.170.120.12 53 177 4.4E-85 T 11-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 Gene3D G3DSA:3.30.1360.10 17 228 4.4E-85 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 SUPERFAMILY SSF55257 7 233 1.18E-30 T 11-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1820 d31633abd97191c40087fece5ea5700c 329 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 60 156 8.7E-23 T 11-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_0997 81883de9668119b3406b5e7b075199c2 280 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 14 279 1.5E-106 T 11-10-2018 APJL_0997 81883de9668119b3406b5e7b075199c2 280 ProSitePatterns PS00728 AP endonucleases family 1 signature 3. 236 247 - T 11-10-2018 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 APJL_0997 81883de9668119b3406b5e7b075199c2 280 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 14 280 2.3E-93 T 11-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 APJL_0997 81883de9668119b3406b5e7b075199c2 280 Gene3D G3DSA:3.60.10.10 14 280 1.1E-80 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APJL_0997 81883de9668119b3406b5e7b075199c2 280 SUPERFAMILY SSF56219 14 280 1.14E-85 T 11-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily APJL_0997 81883de9668119b3406b5e7b075199c2 280 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 18 272 3.7E-23 T 11-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase APJL_0997 81883de9668119b3406b5e7b075199c2 280 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 40 49 - T 11-10-2018 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 APJL_1996 90552d498cc5f1306e84a694764dac5a 144 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 4 142 2.9E-52 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 APJL_1996 90552d498cc5f1306e84a694764dac5a 144 SUPERFAMILY SSF69500 1 143 2.35E-54 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily APJL_1996 90552d498cc5f1306e84a694764dac5a 144 Gene3D G3DSA:3.50.80.10 1 144 1.1E-55 T 11-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily APJL_1996 90552d498cc5f1306e84a694764dac5a 144 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 144 33.166 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 APJL_1996 90552d498cc5f1306e84a694764dac5a 144 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 143 4.6E-65 T 11-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 SUPERFAMILY SSF53244 315 452 2.22E-36 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 Gene3D G3DSA:3.40.1190.10 96 312 3.6E-55 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 Gene3D G3DSA:3.40.50.720 1 93 1.5E-35 T 11-10-2018 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 363 4.4E-10 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 SUPERFAMILY SSF53623 96 311 1.02E-50 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 Pfam PF08245 Mur ligase middle domain 111 294 2.4E-22 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 4 453 56.693 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 Pfam PF01225 Mur ligase family, catalytic domain 5 102 2.9E-17 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 Gene3D G3DSA:3.90.190.20 317 454 4.3E-31 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 SUPERFAMILY SSF51984 4 92 3.01E-23 T 11-10-2018 APJL_1419 9bf3e53ece6939689e0e44dd3de0239c 454 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 5 453 2.4E-248 T 11-10-2018 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 MetaCyc: PWY-7883 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 3 193 44.231 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 Pfam PF00574 Clp protease 13 192 3.1E-88 T 11-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 PRINTS PR00127 Clp protease catalytic subunit P signature 111 130 4.0E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 PRINTS PR00127 Clp protease catalytic subunit P signature 90 107 4.0E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 PRINTS PR00127 Clp protease catalytic subunit P signature 59 79 4.0E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 PRINTS PR00127 Clp protease catalytic subunit P signature 19 34 4.0E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 PRINTS PR00127 Clp protease catalytic subunit P signature 168 187 4.0E-54 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 SUPERFAMILY SSF52096 10 194 2.73E-74 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 Gene3D G3DSA:3.90.226.10 1 196 7.3E-81 T 11-10-2018 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 1 192 1.1E-107 T 11-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 APJL_1292 3b1f3441e53eb9048b43c83f695de694 196 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 112 125 - T 11-10-2018 IPR033135 ClpP, histidine active site APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 485 501 - T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 PRINTS PR00397 Sirohaem Fe-binding site signature 437 455 4.8E-8 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 PRINTS PR00397 Sirohaem Fe-binding site signature 485 503 4.8E-8 T 11-10-2018 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 Gene3D G3DSA:3.30.413.10 433 575 5.3E-31 T 11-10-2018 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 SUPERFAMILY SSF56014 435 568 2.22E-31 T 11-10-2018 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 Gene3D G3DSA:3.90.480.20 17 415 1.1E-75 T 11-10-2018 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 SUPERFAMILY SSF55124 354 429 2.78E-20 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 20 566 1.4E-280 T 11-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 SUPERFAMILY SSF55124 15 146 1.8E-24 T 11-10-2018 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 361 425 5.6E-13 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 79 139 3.3E-11 T 11-10-2018 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 Gene3D G3DSA:3.30.413.10 142 356 1.1E-75 T 11-10-2018 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 175 339 1.6E-43 T 11-10-2018 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 SUPERFAMILY SSF56014 151 352 2.62E-50 T 11-10-2018 APJL_1881 3ec69ea18906ba5a43c9ba48d82bdccf 588 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 11 578 56.977 T 11-10-2018 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_0333 49459d21d6be0b76e9a598fd94b5f818 213 SUPERFAMILY SSF53271 2 200 2.84E-47 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_0333 49459d21d6be0b76e9a598fd94b5f818 213 Gene3D G3DSA:3.40.50.2020 1 213 9.1E-76 T 11-10-2018 APJL_0333 49459d21d6be0b76e9a598fd94b5f818 213 Pfam PF00156 Phosphoribosyl transferase domain 45 161 2.2E-13 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APJL_0333 49459d21d6be0b76e9a598fd94b5f818 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 34.226 T 11-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_0333 49459d21d6be0b76e9a598fd94b5f818 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 8.0E-68 T 11-10-2018 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_0488 b3c8f8ef7dc30498fb332c2219c2b83b 272 ProSitePatterns PS01229 Hypothetical cof family signature 2. 220 242 - T 11-10-2018 APJL_0488 b3c8f8ef7dc30498fb332c2219c2b83b 272 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 6 265 6.9E-61 T 11-10-2018 IPR000150 Cof family GO:0016787 APJL_0488 b3c8f8ef7dc30498fb332c2219c2b83b 272 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 266 1.4E-63 T 11-10-2018 APJL_0488 b3c8f8ef7dc30498fb332c2219c2b83b 272 Gene3D G3DSA:3.40.50.1000 5 266 5.2E-63 T 11-10-2018 IPR023214 HAD superfamily APJL_0488 b3c8f8ef7dc30498fb332c2219c2b83b 272 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 11-10-2018 APJL_0488 b3c8f8ef7dc30498fb332c2219c2b83b 272 SUPERFAMILY SSF56784 1 270 2.59E-68 T 11-10-2018 IPR036412 HAD-like superfamily APJL_0488 b3c8f8ef7dc30498fb332c2219c2b83b 272 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 6 239 1.8E-21 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 APJL_0488 b3c8f8ef7dc30498fb332c2219c2b83b 272 Gene3D G3DSA:3.30.1240.10 84 195 5.2E-63 T 11-10-2018 APJL_1052 fc07900f14aa02adf84b7069531c3c21 677 Gene3D G3DSA:1.10.1370.40 14 672 6.7E-261 T 11-10-2018 APJL_1052 fc07900f14aa02adf84b7069531c3c21 677 Gene3D G3DSA:1.10.1370.10 139 607 6.7E-261 T 11-10-2018 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 APJL_1052 fc07900f14aa02adf84b7069531c3c21 677 SUPERFAMILY SSF55486 1 674 5.34E-204 T 11-10-2018 APJL_1052 fc07900f14aa02adf84b7069531c3c21 677 Pfam PF01432 Peptidase family M3 221 674 8.8E-163 T 11-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Gene3D G3DSA:2.120.10.90 758 873 5.3E-37 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 873 24.295 T 11-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 872 0.0 T 11-10-2018 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Gene3D G3DSA:1.10.268.10 369 492 1.2E-230 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Gene3D G3DSA:2.120.10.90 530 757 2.9E-82 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 505 3.1E-156 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 SMART SM00434 11 498 2.0E-297 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Gene3D G3DSA:3.90.199.10 33 520 1.2E-230 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 SUPERFAMILY SSF56719 30 520 6.8E-183 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Gene3D G3DSA:3.30.1360.40 236 332 1.2E-230 T 11-10-2018 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 SUPERFAMILY SSF101904 532 883 1.83E-103 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 696 732 3.4E-10 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 825 871 9.7E-14 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 583 1.3E-10 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 587 638 1.9E-8 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 775 821 3.5E-12 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APJL_0297 19a79f9ff582f020c1d4bdf09f0d56aa 896 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 648 691 2.0E-8 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APJL_0026 a4ec4b439dc7c01dd27df21d3c6c82fa 582 SUPERFAMILY SSF52540 18 245 9.84E-65 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0026 a4ec4b439dc7c01dd27df21d3c6c82fa 582 Pfam PF02463 RecF/RecN/SMC N terminal domain 26 534 4.0E-19 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal APJL_0026 a4ec4b439dc7c01dd27df21d3c6c82fa 582 PIRSF PIRSF003128 26 582 8.1E-154 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 APJL_0026 a4ec4b439dc7c01dd27df21d3c6c82fa 582 TIGRFAM TIGR00634 recN: DNA repair protein RecN 26 579 2.6E-179 T 11-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 APJL_0026 a4ec4b439dc7c01dd27df21d3c6c82fa 582 SUPERFAMILY SSF52540 27 530 1.22E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0026 a4ec4b439dc7c01dd27df21d3c6c82fa 582 Gene3D G3DSA:3.40.50.300 283 579 1.8E-46 T 11-10-2018 APJL_0026 a4ec4b439dc7c01dd27df21d3c6c82fa 582 Gene3D G3DSA:3.40.50.300 25 282 2.8E-48 T 11-10-2018 APJL_1583 29e97eeb7f8689aef5eb352b41e39366 426 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 106.172 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 APJL_1583 29e97eeb7f8689aef5eb352b41e39366 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_1583 29e97eeb7f8689aef5eb352b41e39366 426 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 425 5.7E-196 T 11-10-2018 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 APJL_1583 29e97eeb7f8689aef5eb352b41e39366 426 Gene3D G3DSA:3.90.1150.10 8 418 4.6E-182 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_1583 29e97eeb7f8689aef5eb352b41e39366 426 Pfam PF00202 Aminotransferase class-III 32 397 1.3E-77 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_1583 29e97eeb7f8689aef5eb352b41e39366 426 Gene3D G3DSA:3.40.640.10 69 317 4.6E-182 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_1583 29e97eeb7f8689aef5eb352b41e39366 426 SUPERFAMILY SSF53383 1 425 1.44E-138 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 770 244.701 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 Pfam PF12838 4Fe-4S dicluster domain 384 436 1.0E-8 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 Gene3D G3DSA:1.10.1060.10 379 452 8.3E-11 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 SUPERFAMILY SSF142019 102 311 2.09E-57 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 147 291 1.9E-46 T 11-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 424 435 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 20 453 1.8E-178 T 11-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 SUPERFAMILY SSF46548 343 451 1.22E-19 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 Pfam PF10531 SLBB domain 304 352 3.2E-8 T 11-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 Gene3D G3DSA:3.40.50.11540 152 294 8.0E-15 T 11-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_0168 b14934892156f137e3695b5d8d3edc3d 770 Pfam PF13375 RnfC Barrel sandwich hybrid domain 21 123 4.0E-34 T 11-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain APJL_0366 d62962bc872f4472f5e55b2d5e287e8f 834 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 11 805 0.0 T 11-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APJL_0366 d62962bc872f4472f5e55b2d5e287e8f 834 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 652 664 - T 11-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APJL_0366 d62962bc872f4472f5e55b2d5e287e8f 834 Gene3D G3DSA:3.40.50.2000 4 470 8.4E-194 T 11-10-2018 APJL_0366 d62962bc872f4472f5e55b2d5e287e8f 834 Pfam PF00343 Carbohydrate phosphorylase 99 805 0.0 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APJL_0366 d62962bc872f4472f5e55b2d5e287e8f 834 Gene3D G3DSA:3.40.50.2000 471 790 2.8E-146 T 11-10-2018 APJL_0366 d62962bc872f4472f5e55b2d5e287e8f 834 SUPERFAMILY SSF53756 10 809 0.0 T 11-10-2018 APJL_0366 d62962bc872f4472f5e55b2d5e287e8f 834 PIRSF PIRSF000460 3 823 3.4E-231 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 PRINTS PR01467 Bacterial arginine repressor signature 22 35 2.2E-24 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 PRINTS PR01467 Bacterial arginine repressor signature 118 133 2.2E-24 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 PRINTS PR01467 Bacterial arginine repressor signature 39 54 2.2E-24 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 PRINTS PR01467 Bacterial arginine repressor signature 87 100 2.2E-24 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 86 150 4.0E-18 T 11-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 Pfam PF01316 Arginine repressor, DNA binding domain 6 71 3.5E-21 T 11-10-2018 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 Gene3D G3DSA:1.10.10.10 1 71 1.6E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 SUPERFAMILY SSF55252 79 148 5.1E-20 T 11-10-2018 IPR036251 Arginine repressor, C-terminal domain superfamily GO:0034618|GO:0051259 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 SUPERFAMILY SSF46785 6 74 2.72E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 Pfam PF02863 Arginine repressor, C-terminal domain 79 145 1.2E-22 T 11-10-2018 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 Gene3D G3DSA:3.30.1360.40 72 152 2.4E-31 T 11-10-2018 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 Hamap MF_00173 Arginine repressor [argR]. 1 152 60.463 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 APJL_1308 b99b9e56aefcadfd696ea8146ea66c94 153 TIGRFAM TIGR01529 argR_whole: arginine repressor 6 148 7.3E-44 T 11-10-2018 IPR001669 Arginine repressor GO:0003700|GO:0006355 APJL_1841 95f74d811c4fbd73bb8f710a7ea094b7 336 SUPERFAMILY SSF47823 43 133 3.53E-11 T 11-10-2018 APJL_1841 95f74d811c4fbd73bb8f710a7ea094b7 336 Pfam PF00589 Phage integrase family 147 314 2.4E-52 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APJL_1841 95f74d811c4fbd73bb8f710a7ea094b7 336 SUPERFAMILY SSF56349 142 326 1.21E-55 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APJL_1841 95f74d811c4fbd73bb8f710a7ea094b7 336 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 40 328 56.635 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD APJL_1841 95f74d811c4fbd73bb8f710a7ea094b7 336 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 45 330 2.0E-110 T 11-10-2018 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007059|GO:0015074|GO:0051301 APJL_1841 95f74d811c4fbd73bb8f710a7ea094b7 336 Gene3D G3DSA:1.10.443.10 146 322 7.2E-60 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APJL_1841 95f74d811c4fbd73bb8f710a7ea094b7 336 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 45 124 1.9E-19 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APJL_1841 95f74d811c4fbd73bb8f710a7ea094b7 336 Gene3D G3DSA:1.10.150.130 41 133 2.2E-17 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APJL_0227 4024bcdd22104ee73863eed855a5afa6 178 SUPERFAMILY SSF52540 1 104 2.77E-7 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0227 4024bcdd22104ee73863eed855a5afa6 178 Gene3D G3DSA:3.40.50.300 1 141 1.6E-12 T 11-10-2018 APJL_1359 c4cd27437ad8c773b2ac265d7ff627ec 196 SMART SM01207 10 185 1.6E-82 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APJL_1359 c4cd27437ad8c773b2ac265d7ff627ec 196 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 2 193 5.7E-74 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APJL_1359 c4cd27437ad8c773b2ac265d7ff627ec 196 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 18.699 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APJL_1359 c4cd27437ad8c773b2ac265d7ff627ec 196 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 3.1E-49 T 11-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 APJL_1226 8c9f4b1cada9c54baab1122be7d4b0c8 216 Gene3D G3DSA:1.10.150.240 15 84 6.4E-51 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APJL_1226 8c9f4b1cada9c54baab1122be7d4b0c8 216 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 74 184 8.2E-15 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1226 8c9f4b1cada9c54baab1122be7d4b0c8 216 SUPERFAMILY SSF56784 1 209 7.19E-51 T 11-10-2018 IPR036412 HAD-like superfamily APJL_1226 8c9f4b1cada9c54baab1122be7d4b0c8 216 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 183 1.6E-30 T 11-10-2018 APJL_1226 8c9f4b1cada9c54baab1122be7d4b0c8 216 Gene3D G3DSA:3.40.50.1000 6 189 6.4E-51 T 11-10-2018 IPR023214 HAD superfamily APJL_1226 8c9f4b1cada9c54baab1122be7d4b0c8 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 146 166 4.8E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1226 8c9f4b1cada9c54baab1122be7d4b0c8 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 4.8E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1226 8c9f4b1cada9c54baab1122be7d4b0c8 216 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 4.8E-5 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 SUPERFAMILY SSF52833 7 241 1.81E-44 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 PRINTS PR00160 Glutaredoxin signature 215 228 1.0E-13 T 11-10-2018 IPR014025 Glutaredoxin subgroup APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 PRINTS PR00160 Glutaredoxin signature 174 192 1.0E-13 T 11-10-2018 IPR014025 Glutaredoxin subgroup APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 PRINTS PR00160 Glutaredoxin signature 229 242 1.0E-13 T 11-10-2018 IPR014025 Glutaredoxin subgroup APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 Pfam PF00462 Glutaredoxin 174 232 9.0E-16 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 Pfam PF08534 Redoxin 7 160 4.3E-32 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 Gene3D G3DSA:3.40.30.10 172 243 1.8E-22 T 11-10-2018 APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 167 243 1.2E-38 T 11-10-2018 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 APJL_1507 2aaeff0c989ff4a41913e4fa33dd66f3 244 Gene3D G3DSA:3.40.30.10 6 166 2.2E-61 T 11-10-2018 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 SUPERFAMILY SSF52540 158 370 7.24E-41 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 SUPERFAMILY SSF48295 390 493 1.28E-38 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 Gene3D G3DSA:3.40.50.300 156 324 9.1E-50 T 11-10-2018 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 SMART SM00760 402 471 4.9E-46 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 ProSitePatterns PS01008 DnaA protein signature. 452 471 - T 11-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 Gene3D G3DSA:1.10.8.60 325 396 3.9E-24 T 11-10-2018 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 Gene3D G3DSA:3.30.300.180 48 153 6.4E-24 T 11-10-2018 IPR038454 DnaA, N-terminal domain superfamily APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 Gene3D G3DSA:1.10.1750.10 401 494 3.8E-38 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 52 492 1.8E-179 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 Pfam PF11638 DnaA N-terminal domain 50 109 3.0E-17 T 11-10-2018 IPR024633 DnaA N-terminal domain APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 403 471 2.0E-33 T 11-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 SMART SM00382 191 322 1.5E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 49 493 33.066 T 11-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 256 270 3.0E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 290 317 3.0E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 192 212 3.0E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 452 471 3.0E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 224 238 3.0E-47 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APJL_0001 ef3793a3cef63b4fce5abb28b289f8b3 494 Pfam PF00308 Bacterial dnaA protein 158 376 2.5E-93 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA APJL_1382 e01a38e431dcc1b7150de5dd2b1f6d3f 192 Gene3D G3DSA:3.40.50.10490 1 192 3.4E-41 T 11-10-2018 APJL_1382 e01a38e431dcc1b7150de5dd2b1f6d3f 192 SUPERFAMILY SSF53697 1 190 1.03E-34 T 11-10-2018 APJL_1382 e01a38e431dcc1b7150de5dd2b1f6d3f 192 Pfam PF13580 SIS domain 10 144 1.2E-18 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APJL_1391 529e23b92552a02ca824435a8c388f39 236 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 2 234 4.2E-78 T 11-10-2018 IPR017788 DnaA regulatory inactivator Hda GO:0032297 APJL_1391 529e23b92552a02ca824435a8c388f39 236 Pfam PF00308 Bacterial dnaA protein 40 215 2.7E-17 T 11-10-2018 IPR013317 Chromosomal replication initiator protein DnaA APJL_1391 529e23b92552a02ca824435a8c388f39 236 Gene3D G3DSA:1.10.8.60 170 236 1.3E-25 T 11-10-2018 APJL_1391 529e23b92552a02ca824435a8c388f39 236 SUPERFAMILY SSF52540 11 214 7.34E-23 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1391 529e23b92552a02ca824435a8c388f39 236 Gene3D G3DSA:3.40.50.300 1 166 3.5E-29 T 11-10-2018 APJL_1391 529e23b92552a02ca824435a8c388f39 236 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 39 59 2.7E-5 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APJL_1391 529e23b92552a02ca824435a8c388f39 236 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 134 161 2.7E-5 T 11-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 Gene3D G3DSA:3.40.50.620 158 378 2.2E-51 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 Pfam PF02926 THUMP domain 12 145 4.4E-24 T 11-10-2018 IPR004114 THUMP domain GO:0003723 APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 SUPERFAMILY SSF52821 377 463 3.27E-10 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 366 464 1.4E-40 T 11-10-2018 IPR026340 Thiazole biosynthesis domain GO:0052837 KEGG: 00730+2.8.1.4 APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 SMART SM00981 58 148 4.4E-23 T 11-10-2018 IPR004114 THUMP domain GO:0003723 APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 158 352 1.8E-74 T 11-10-2018 IPR020536 Thil, AANH domain GO:0004810 KEGG: 00730+2.8.1.4 APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 SUPERFAMILY SSF52402 157 355 8.38E-41 T 11-10-2018 APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 1 353 4.6E-115 T 11-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 Gene3D G3DSA:3.40.250.10 379 465 1.0E-9 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 465 209.408 T 11-10-2018 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 KEGG: 00730+2.8.1.4 APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 SUPERFAMILY SSF143437 2 156 2.09E-39 T 11-10-2018 APJL_1090 5232127c0575bbd64dc8e733f62d3359 465 Gene3D G3DSA:3.30.2130.30 1 157 5.1E-31 T 11-10-2018 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 Gene3D G3DSA:3.40.50.620 1 305 3.3E-140 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 SUPERFAMILY SSF52374 1 309 1.02E-102 T 11-10-2018 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 Pfam PF09190 DALR domain 341 402 1.4E-24 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 SUPERFAMILY SSF47323 316 458 9.42E-42 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 458 1.6E-194 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 Gene3D G3DSA:1.20.120.640 307 458 4.0E-52 T 11-10-2018 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 459 39.367 T 11-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 7.1E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 7.1E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 7.1E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 7.1E-30 T 11-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 312 1.8E-141 T 11-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 APJL_0925 399f2aafd706a1d542d14ff804f850ff 459 SMART SM00840 341 402 1.4E-28 T 11-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 APJL_1905 85e4cb87278d89456e151d8c5e80f557 154 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 11-10-2018 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APJL_1905 85e4cb87278d89456e151d8c5e80f557 154 Gene3D G3DSA:3.40.50.9100 1 154 3.0E-74 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APJL_1905 85e4cb87278d89456e151d8c5e80f557 154 Pfam PF01220 Dehydroquinase class II 3 139 1.0E-64 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APJL_1905 85e4cb87278d89456e151d8c5e80f557 154 PIRSF PIRSF001399 1 146 1.6E-64 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APJL_1905 85e4cb87278d89456e151d8c5e80f557 154 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 154 73.297 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APJL_1905 85e4cb87278d89456e151d8c5e80f557 154 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 3 141 7.4E-65 T 11-10-2018 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APJL_1905 85e4cb87278d89456e151d8c5e80f557 154 SUPERFAMILY SSF52304 3 145 2.09E-63 T 11-10-2018 IPR036441 Dehydroquinase, class II superfamily GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 APJL_1905 85e4cb87278d89456e151d8c5e80f557 154 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 17 142 6.0E-70 T 11-10-2018 APJL_0049 540e528c0cc634cfe908f01a1636cd91 238 SUPERFAMILY SSF52172 2 126 3.56E-36 T 11-10-2018 IPR011006 CheY-like superfamily APJL_0049 540e528c0cc634cfe908f01a1636cd91 238 Gene3D G3DSA:1.10.10.10 123 236 6.1E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0049 540e528c0cc634cfe908f01a1636cd91 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 233 1.3E-17 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APJL_0049 540e528c0cc634cfe908f01a1636cd91 238 Gene3D G3DSA:3.40.50.2300 1 122 3.5E-33 T 11-10-2018 APJL_0049 540e528c0cc634cfe908f01a1636cd91 238 SUPERFAMILY SSF46894 134 235 8.22E-22 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APJL_0049 540e528c0cc634cfe908f01a1636cd91 238 SMART SM00448 4 114 7.5E-37 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0049 540e528c0cc634cfe908f01a1636cd91 238 Pfam PF00072 Response regulator receiver domain 6 113 3.4E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0049 540e528c0cc634cfe908f01a1636cd91 238 SMART SM00862 156 233 6.0E-16 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 Gene3D G3DSA:3.30.1330.60 225 368 3.0E-45 T 11-10-2018 IPR036737 OmpA-like domain superfamily APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 SUPERFAMILY SSF103088 239 360 8.76E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 SUPERFAMILY SSF56925 20 227 4.97E-34 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 Gene3D G3DSA:2.40.160.20 20 224 5.8E-47 T 11-10-2018 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 PRINTS PR01021 OMPA domain signature 249 271 6.7E-18 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 PRINTS PR01021 OMPA domain signature 281 296 6.7E-18 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 PRINTS PR01021 OMPA domain signature 296 312 6.7E-18 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 PRINTS PR01022 Outer membrane protein A signature 339 352 1.9E-11 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 PRINTS PR01022 Outer membrane protein A signature 305 324 1.9E-11 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 PRINTS PR01022 Outer membrane protein A signature 237 252 1.9E-11 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 PRINTS PR01022 Outer membrane protein A signature 124 140 1.9E-11 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 Pfam PF01389 OmpA-like transmembrane domain 21 226 2.1E-67 T 11-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 APJL_1453 8b240f3087beed43f5e76a9e3e4187ef 368 Pfam PF00691 OmpA family 248 340 7.0E-20 T 11-10-2018 IPR006665 OmpA-like domain APJL_1410 ab602c992662a32355bc48760d1c8027 323 Pfam PF03830 PTS system sorbose subfamily IIB component 163 309 4.3E-53 T 11-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 APJL_1410 ab602c992662a32355bc48760d1c8027 323 SUPERFAMILY SSF53062 2 132 1.7E-33 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 APJL_1410 ab602c992662a32355bc48760d1c8027 323 Gene3D G3DSA:3.40.50.510 2 137 5.2E-37 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 APJL_1410 ab602c992662a32355bc48760d1c8027 323 Pfam PF03610 PTS system fructose IIA component 5 118 3.1E-33 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 APJL_1410 ab602c992662a32355bc48760d1c8027 323 SUPERFAMILY SSF52728 162 320 3.53E-53 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 APJL_1410 ab602c992662a32355bc48760d1c8027 323 Gene3D G3DSA:3.40.35.10 159 321 2.3E-57 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 APJL_1410 ab602c992662a32355bc48760d1c8027 323 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 3 117 3.7E-39 T 11-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 APJL_1410 ab602c992662a32355bc48760d1c8027 323 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 163 310 1.9E-53 T 11-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 SUPERFAMILY SSF88659 515 617 2.07E-26 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Gene3D G3DSA:1.10.10.10 458 534 1.3E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Gene3D G3DSA:1.10.10.10 535 619 3.4E-37 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 409 422 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 578 604 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Gene3D G3DSA:1.10.220.120 2 66 2.0E-24 T 11-10-2018 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.2E-12 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Gene3D G3DSA:1.10.601.10 113 454 4.0E-128 T 11-10-2018 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Pfam PF04542 Sigma-70 region 2 385 454 1.7E-21 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Pfam PF04546 Sigma-70, non-essential region 139 354 9.8E-61 T 11-10-2018 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 381 606 2.0E-37 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 SUPERFAMILY SSF88659 458 532 4.86E-21 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 6 618 45.028 T 11-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Pfam PF04545 Sigma-70, region 4 553 606 3.0E-19 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 SUPERFAMILY SSF88946 115 452 4.32E-97 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Pfam PF03979 Sigma-70 factor, region 1.1 6 82 8.3E-25 T 11-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 381 617 1.6E-121 T 11-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 PRINTS PR00046 Major sigma-70 factor signature 409 422 3.1E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 PRINTS PR00046 Major sigma-70 factor signature 578 593 3.1E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 PRINTS PR00046 Major sigma-70 factor signature 433 441 3.1E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 PRINTS PR00046 Major sigma-70 factor signature 557 569 3.1E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 PRINTS PR00046 Major sigma-70 factor signature 593 604 3.1E-31 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1500 2ab17ab64cbd1b0bab8fb576f312a005 619 Pfam PF04539 Sigma-70 region 3 464 539 2.0E-29 T 11-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 APJL_1923 441d61143632bc1ae69f55fd47d2cbde 303 Gene3D G3DSA:2.30.30.60 144 193 3.2E-18 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily APJL_1923 441d61143632bc1ae69f55fd47d2cbde 303 Gene3D G3DSA:3.30.70.100 195 288 6.9E-22 T 11-10-2018 APJL_1923 441d61143632bc1ae69f55fd47d2cbde 303 Pfam PF00924 Mechanosensitive ion channel 86 283 2.6E-53 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APJL_1923 441d61143632bc1ae69f55fd47d2cbde 303 SUPERFAMILY SSF50182 129 194 2.42E-17 T 11-10-2018 IPR010920 LSM domain superfamily APJL_1923 441d61143632bc1ae69f55fd47d2cbde 303 SUPERFAMILY SSF82861 42 127 3.14E-18 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APJL_1923 441d61143632bc1ae69f55fd47d2cbde 303 SUPERFAMILY SSF82689 196 293 5.23E-27 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APJL_1923 441d61143632bc1ae69f55fd47d2cbde 303 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 158 192 - T 11-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 APJL_1523 5112ff31fd754777f098a052e525d6c6 152 Pfam PF02142 MGS-like domain 33 117 3.8E-17 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain APJL_1523 5112ff31fd754777f098a052e525d6c6 152 Gene3D G3DSA:3.40.50.1380 1 152 5.5E-61 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APJL_1523 5112ff31fd754777f098a052e525d6c6 152 TIGRFAM TIGR00160 MGSA: methylglyoxal synthase 11 151 2.2E-64 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 APJL_1523 5112ff31fd754777f098a052e525d6c6 152 ProSitePatterns PS01335 Methylglyoxal synthase active site. 65 73 - T 11-10-2018 IPR018148 Methylglyoxal synthase, active site GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 APJL_1523 5112ff31fd754777f098a052e525d6c6 152 SMART SM00851 25 118 3.8E-19 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain APJL_1523 5112ff31fd754777f098a052e525d6c6 152 PIRSF PIRSF006614 8 151 5.1E-61 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 APJL_1523 5112ff31fd754777f098a052e525d6c6 152 Hamap MF_00549 Methylglyoxal synthase [mgsA]. 12 131 31.784 T 11-10-2018 IPR004363 Methylglyoxal synthase GO:0008929|GO:0019242 KEGG: 00640+4.2.3.3 APJL_1523 5112ff31fd754777f098a052e525d6c6 152 SUPERFAMILY SSF52335 4 147 5.23E-52 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Gene3D G3DSA:1.10.486.10 592 737 2.6E-111 T 11-10-2018 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Gene3D G3DSA:3.40.50.300 4 450 2.2E-123 T 11-10-2018 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 SUPERFAMILY SSF52980 911 1201 3.16E-72 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 5 1201 1.9E-301 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Gene3D G3DSA:3.90.320.10 899 1202 5.0E-80 T 11-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Pfam PF12705 PD-(D/E)XK nuclease superfamily 972 1175 4.7E-7 T 11-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Pfam PF00580 UvrD/REP helicase N-terminal domain 6 451 1.0E-62 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Gene3D G3DSA:1.10.3170.10 151 361 2.2E-123 T 11-10-2018 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Pfam PF13361 UvrD-like helicase C-terminal domain 694 830 4.5E-11 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 SUPERFAMILY SSF52540 10 834 2.54E-99 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 2 1202 20.717 T 11-10-2018 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Gene3D G3DSA:3.40.50.300 460 830 2.6E-111 T 11-10-2018 APJL_0388 a740c4c3525be62c0c003038a6954c76 1202 Pfam PF13361 UvrD-like helicase C-terminal domain 457 659 2.4E-8 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 Hamap MF_01558 Cytidine deaminase [cdd]. 7 297 45.642 T 11-10-2018 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 SUPERFAMILY SSF53927 159 295 3.01E-33 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 108 142 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 Gene3D G3DSA:3.40.140.10 35 185 4.8E-43 T 11-10-2018 APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 SUPERFAMILY SSF53927 9 155 3.76E-41 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 67 149 8.4E-14 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 Gene3D G3DSA:3.40.140.10 186 289 2.7E-18 T 11-10-2018 APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 PIRSF PIRSF006334 20 297 1.6E-97 T 11-10-2018 APJL_1361 4181993c68cdedd4dc5a662591a6797d 297 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 163 279 1.0E-36 T 11-10-2018 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 APJL_0885 8c4c2ea5943fe3a9a8d03004a265d3f7 164 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 1 158 24.85 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 APJL_0885 8c4c2ea5943fe3a9a8d03004a265d3f7 164 Pfam PF04390 Lipopolysaccharide-assembly 38 152 4.9E-9 T 11-10-2018 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 APJL_0885 8c4c2ea5943fe3a9a8d03004a265d3f7 164 Gene3D G3DSA:3.30.160.150 13 161 8.6E-44 T 11-10-2018 APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 2.1E-58 T 11-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 242 1.4E-20 T 11-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 SUPERFAMILY SSF88697 245 304 1.34E-11 T 11-10-2018 IPR015947 PUA-like superfamily APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 Gene3D G3DSA:2.30.130.10 244 304 2.3E-6 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 246 303 2.3E-18 T 11-10-2018 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 218 5.0E-91 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 303 19.07 T 11-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 Gene3D G3DSA:3.30.2350.10 1 243 1.8E-92 T 11-10-2018 APJL_0632 2b97986658df1dd5da5a11317ef91fcc 305 SUPERFAMILY SSF55120 11 242 1.47E-81 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0862 616ac51b86bab0704dae424682b35b3f 268 Pfam PF00005 ABC transporter 37 189 3.5E-37 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0862 616ac51b86bab0704dae424682b35b3f 268 SUPERFAMILY SSF52540 12 260 6.39E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0862 616ac51b86bab0704dae424682b35b3f 268 Gene3D G3DSA:3.40.50.300 9 267 1.7E-83 T 11-10-2018 APJL_0862 616ac51b86bab0704dae424682b35b3f 268 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0862 616ac51b86bab0704dae424682b35b3f 268 SMART SM00382 46 238 6.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0755 8dea3eec1c83a2bc2d90b21497b5359d 241 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 2 241 42.696 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 APJL_0755 8dea3eec1c83a2bc2d90b21497b5359d 241 Pfam PF13649 Methyltransferase domain 59 157 3.8E-12 T 11-10-2018 APJL_0755 8dea3eec1c83a2bc2d90b21497b5359d 241 SUPERFAMILY SSF53335 19 241 1.95E-36 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0755 8dea3eec1c83a2bc2d90b21497b5359d 241 PIRSF PIRSF006325 1 241 1.1E-121 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 APJL_0755 8dea3eec1c83a2bc2d90b21497b5359d 241 Gene3D G3DSA:3.40.50.150 17 241 2.3E-60 T 11-10-2018 APJL_0755 8dea3eec1c83a2bc2d90b21497b5359d 241 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 3 241 2.0E-123 T 11-10-2018 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 APJL_1099 6a1a91040a05b1d2611d9f4dc520dc14 468 Pfam PF13520 Amino acid permease 6 435 6.8E-72 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APJL_1099 6a1a91040a05b1d2611d9f4dc520dc14 468 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 4 465 2.1E-153 T 11-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 APJL_1099 6a1a91040a05b1d2611d9f4dc520dc14 468 PIRSF PIRSF006060 1 467 8.9E-54 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APJL_1099 6a1a91040a05b1d2611d9f4dc520dc14 468 Gene3D G3DSA:1.20.1740.10 1 463 1.4E-60 T 11-10-2018 APJL_0631 3c2a25a1b869a40bb247f4cafba3fcc0 127 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 6 112 27.487 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 APJL_0631 3c2a25a1b869a40bb247f4cafba3fcc0 127 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 99 5.0E-44 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 APJL_0631 3c2a25a1b869a40bb247f4cafba3fcc0 127 ProSitePatterns PS01319 Ribosome-binding factor A signature. 78 99 - T 11-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 APJL_0631 3c2a25a1b869a40bb247f4cafba3fcc0 127 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 117 2.2E-44 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 APJL_0631 3c2a25a1b869a40bb247f4cafba3fcc0 127 Pfam PF02033 Ribosome-binding factor A 7 111 1.8E-32 T 11-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 APJL_0631 3c2a25a1b869a40bb247f4cafba3fcc0 127 SUPERFAMILY SSF89919 3 106 7.46E-34 T 11-10-2018 IPR023799 Ribosome-binding factor A domain superfamily APJL_0631 3c2a25a1b869a40bb247f4cafba3fcc0 127 Gene3D G3DSA:3.30.300.20 1 106 1.7E-41 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APJL_0147 88c8cdd8156ee701ad824e163dbeefac 325 Gene3D G3DSA:1.20.120.1460 249 325 7.6E-21 T 11-10-2018 APJL_0147 88c8cdd8156ee701ad824e163dbeefac 325 Pfam PF01207 Dihydrouridine synthase (Dus) 12 317 8.0E-94 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0147 88c8cdd8156ee701ad824e163dbeefac 325 PIRSF PIRSF006621 1 324 8.1E-71 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0147 88c8cdd8156ee701ad824e163dbeefac 325 SUPERFAMILY SSF51395 9 319 5.29E-71 T 11-10-2018 APJL_0147 88c8cdd8156ee701ad824e163dbeefac 325 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 8 322 7.4E-166 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 APJL_0147 88c8cdd8156ee701ad824e163dbeefac 325 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 90 108 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0147 88c8cdd8156ee701ad824e163dbeefac 325 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 4 323 50.864 T 11-10-2018 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 APJL_0147 88c8cdd8156ee701ad824e163dbeefac 325 Gene3D G3DSA:3.20.20.70 7 246 1.9E-70 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0359 ba0b3a4f0cf43adfb7d5d8412d7d3a63 553 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 103 187 7.7E-17 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 APJL_0359 ba0b3a4f0cf43adfb7d5d8412d7d3a63 553 SUPERFAMILY SSF52794 100 201 1.12E-33 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 APJL_0359 ba0b3a4f0cf43adfb7d5d8412d7d3a63 553 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 102 185 4.2E-38 T 11-10-2018 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 KEGG: 00051+2.7.1.202 APJL_0359 ba0b3a4f0cf43adfb7d5d8412d7d3a63 553 Gene3D G3DSA:3.40.50.2300 90 201 2.6E-37 T 11-10-2018 APJL_0359 ba0b3a4f0cf43adfb7d5d8412d7d3a63 553 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 210 548 2.0E-140 T 11-10-2018 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 APJL_0359 ba0b3a4f0cf43adfb7d5d8412d7d3a63 553 SUPERFAMILY SSF52794 6 84 2.44E-5 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 APJL_0359 ba0b3a4f0cf43adfb7d5d8412d7d3a63 553 Pfam PF02378 Phosphotransferase system, EIIC 229 488 9.9E-14 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 APJL_0101 9b2cc680cfcbab7dfd5dc3e7b28859b7 215 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 52 198 1.0E-55 T 11-10-2018 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 APJL_0101 9b2cc680cfcbab7dfd5dc3e7b28859b7 215 SUPERFAMILY SSF48695 47 198 1.5E-25 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily APJL_0101 9b2cc680cfcbab7dfd5dc3e7b28859b7 215 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 97 148 9.0E-5 T 11-10-2018 IPR010177 Doubled CXXCH motif APJL_0101 9b2cc680cfcbab7dfd5dc3e7b28859b7 215 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 164 198 1.2E-4 T 11-10-2018 IPR010177 Doubled CXXCH motif APJL_0101 9b2cc680cfcbab7dfd5dc3e7b28859b7 215 Gene3D G3DSA:1.10.1130.10 118 202 2.0E-6 T 11-10-2018 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 Pfam PF03222 Tryptophan/tyrosine permease family 1 366 5.3E-117 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 Gene3D G3DSA:1.20.1740.10 2 377 1.5E-10 T 11-10-2018 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 1 359 4.9E-121 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 PRINTS PR00166 Aromatic amino acid permease signature 159 181 4.0E-62 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 PRINTS PR00166 Aromatic amino acid permease signature 1 11 4.0E-62 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 PRINTS PR00166 Aromatic amino acid permease signature 59 79 4.0E-62 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 PRINTS PR00166 Aromatic amino acid permease signature 125 145 4.0E-62 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 PRINTS PR00166 Aromatic amino acid permease signature 198 217 4.0E-62 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 PRINTS PR00166 Aromatic amino acid permease signature 259 278 4.0E-62 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 PRINTS PR00166 Aromatic amino acid permease signature 314 333 4.0E-62 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0590 3a0e203c18f23f457de0822e1fcfe69d 381 PRINTS PR00166 Aromatic amino acid permease signature 293 311 4.0E-62 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1272 f03b517ccb0e2a7f41469542d9fc5104 347 SUPERFAMILY SSF53850 27 335 1.04E-99 T 11-10-2018 APJL_1272 f03b517ccb0e2a7f41469542d9fc5104 347 Gene3D G3DSA:3.40.190.10 29 325 6.0E-124 T 11-10-2018 APJL_1272 f03b517ccb0e2a7f41469542d9fc5104 347 PIRSF PIRSF002756 6 339 9.3E-112 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 APJL_1272 f03b517ccb0e2a7f41469542d9fc5104 347 Gene3D G3DSA:3.40.190.10 102 278 6.0E-124 T 11-10-2018 APJL_1272 f03b517ccb0e2a7f41469542d9fc5104 347 Pfam PF12849 PBP superfamily domain 26 307 1.5E-60 T 11-10-2018 IPR024370 PBP domain APJL_1272 f03b517ccb0e2a7f41469542d9fc5104 347 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 28 336 6.8E-125 T 11-10-2018 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 PRINTS PR00070 Dihydrofolate reductase signature 14 24 4.0E-14 T 11-10-2018 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 PRINTS PR00070 Dihydrofolate reductase signature 41 52 4.0E-14 T 11-10-2018 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 PRINTS PR00070 Dihydrofolate reductase signature 28 36 4.0E-14 T 11-10-2018 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 PRINTS PR00070 Dihydrofolate reductase signature 94 108 4.0E-14 T 11-10-2018 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 SUPERFAMILY SSF53597 1 162 2.75E-52 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 PIRSF PIRSF000194 1 162 3.9E-54 T 11-10-2018 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0046654|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 Pfam PF00186 Dihydrofolate reductase 2 161 1.0E-54 T 11-10-2018 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0046654|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 14 36 - T 11-10-2018 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-1474151|Reactome: R-HSA-196757|Reactome: R-HSA-539107 APJL_0895 a878ed8a0c9ea66d67616078174d9dd4 162 Gene3D G3DSA:3.40.430.10 1 162 7.6E-53 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 APJL_1131 10725c6c937743e0b178ec2e38e5456c 391 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 372 382 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site APJL_1131 10725c6c937743e0b178ec2e38e5456c 391 Gene3D G3DSA:3.40.50.150 16 383 3.2E-72 T 11-10-2018 APJL_1131 10725c6c937743e0b178ec2e38e5456c 391 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 216 389 5.3E-14 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 APJL_1131 10725c6c937743e0b178ec2e38e5456c 391 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 322 353 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site APJL_1131 10725c6c937743e0b178ec2e38e5456c 391 SUPERFAMILY SSF53335 4 389 7.25E-58 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1131 10725c6c937743e0b178ec2e38e5456c 391 TIGRFAM TIGR02085 meth_trns_rumB: 23S rRNA (uracil-5-)-methyltransferase RumB 4 389 1.1E-181 T 11-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 APJL_1131 10725c6c937743e0b178ec2e38e5456c 391 Hamap MF_01012 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC [rlmC]. 3 390 84.994 T 11-10-2018 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC GO:0016070|GO:0016436 APJL_1131 10725c6c937743e0b178ec2e38e5456c 391 Gene3D G3DSA:3.40.1350.30 61 219 3.2E-72 T 11-10-2018 APJL_0552 6777188404285fec339495e085e6be96 343 SUPERFAMILY SSF53850 25 324 9.88E-63 T 11-10-2018 APJL_0552 6777188404285fec339495e085e6be96 343 Gene3D G3DSA:3.40.190.10 32 306 4.2E-99 T 11-10-2018 APJL_0552 6777188404285fec339495e085e6be96 343 PIRSF PIRSF002825 1 339 1.9E-61 T 11-10-2018 IPR026045 Ferric binding protein APJL_0552 6777188404285fec339495e085e6be96 343 Pfam PF13343 Bacterial extracellular solute-binding protein 76 319 2.3E-31 T 11-10-2018 APJL_0552 6777188404285fec339495e085e6be96 343 Gene3D G3DSA:3.40.190.10 134 321 4.2E-99 T 11-10-2018 APJL_0292 a9986bc1d0b3338812b12e82765902b1 255 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 250 2.9E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0292 a9986bc1d0b3338812b12e82765902b1 255 Gene3D G3DSA:1.10.3720.10 3 255 2.8E-48 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0292 a9986bc1d0b3338812b12e82765902b1 255 SUPERFAMILY SSF161098 4 253 6.67E-55 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0382 dd537efb333ce4732902484aa37a7498 932 Pfam PF00082 Subtilase family 49 399 5.2E-42 T 11-10-2018 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 APJL_0382 dd537efb333ce4732902484aa37a7498 932 Pfam PF03797 Autotransporter beta-domain 687 912 6.5E-28 T 11-10-2018 IPR005546 Autotransporter beta-domain APJL_0382 dd537efb333ce4732902484aa37a7498 932 PRINTS PR00723 Subtilisin serine protease family (S8) signature 112 125 6.1E-9 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related APJL_0382 dd537efb333ce4732902484aa37a7498 932 PRINTS PR00723 Subtilisin serine protease family (S8) signature 49 68 6.1E-9 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related APJL_0382 dd537efb333ce4732902484aa37a7498 932 PRINTS PR00723 Subtilisin serine protease family (S8) signature 348 364 6.1E-9 T 11-10-2018 IPR015500 Peptidase S8, subtilisin-related APJL_0382 dd537efb333ce4732902484aa37a7498 932 Gene3D G3DSA:2.40.128.130 634 932 1.2E-30 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APJL_0382 dd537efb333ce4732902484aa37a7498 932 SMART SM00869 675 922 2.7E-19 T 11-10-2018 IPR005546 Autotransporter beta-domain APJL_0382 dd537efb333ce4732902484aa37a7498 932 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 349 359 - T 11-10-2018 IPR023828 Peptidase S8, subtilisin, Ser-active site APJL_0382 dd537efb333ce4732902484aa37a7498 932 SUPERFAMILY SSF52743 15 461 2.1E-58 T 11-10-2018 IPR036852 Peptidase S8/S53 domain superfamily GO:0004252|GO:0006508 APJL_0382 dd537efb333ce4732902484aa37a7498 932 SUPERFAMILY SSF103515 640 932 6.41E-39 T 11-10-2018 IPR036709 Autotransporter beta-domain superfamily APJL_0405 c2cbb92bbfbaa55f9d8ebf2071c2f413 153 SUPERFAMILY SSF52121 5 153 2.75E-64 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0405 c2cbb92bbfbaa55f9d8ebf2071c2f413 153 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 12 150 4.5E-60 T 11-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0405 c2cbb92bbfbaa55f9d8ebf2071c2f413 153 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 13 149 8.3E-61 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0405 c2cbb92bbfbaa55f9d8ebf2071c2f413 153 Gene3D G3DSA:3.40.50.960 1 153 4.6E-65 T 11-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0405 c2cbb92bbfbaa55f9d8ebf2071c2f413 153 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 153 31.986 T 11-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 Gene3D G3DSA:3.40.1160.10 1 307 9.7E-107 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 TIGRFAM TIGR00746 arcC: carbamate kinase 1 305 3.4E-117 T 11-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 PIRSF PIRSF000723 1 306 6.9E-110 T 11-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 Pfam PF00696 Amino acid kinase family 1 286 1.3E-20 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 PRINTS PR01469 Bacterial carbamate kinase signature 106 125 3.0E-59 T 11-10-2018 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 PRINTS PR01469 Bacterial carbamate kinase signature 261 276 3.0E-59 T 11-10-2018 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 PRINTS PR01469 Bacterial carbamate kinase signature 41 60 3.0E-59 T 11-10-2018 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 PRINTS PR01469 Bacterial carbamate kinase signature 75 93 3.0E-59 T 11-10-2018 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 PRINTS PR01469 Bacterial carbamate kinase signature 177 195 3.0E-59 T 11-10-2018 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 PRINTS PR01469 Bacterial carbamate kinase signature 154 173 3.0E-59 T 11-10-2018 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 PRINTS PR01469 Bacterial carbamate kinase signature 208 223 3.0E-59 T 11-10-2018 APJL_1332 33929ccaebf923d1757819b6a3641b1b 315 SUPERFAMILY SSF53633 1 304 4.97E-69 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_0067 c69b9c6eee97c64decbab1b5c4550bab 328 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0067 c69b9c6eee97c64decbab1b5c4550bab 328 SUPERFAMILY SSF52540 3 253 2.34E-64 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0067 c69b9c6eee97c64decbab1b5c4550bab 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 1.8E-18 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APJL_0067 c69b9c6eee97c64decbab1b5c4550bab 328 Pfam PF00005 ABC transporter 24 181 1.1E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0067 c69b9c6eee97c64decbab1b5c4550bab 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 316 8.4E-26 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APJL_0067 c69b9c6eee97c64decbab1b5c4550bab 328 Gene3D G3DSA:3.40.50.300 1 325 1.4E-92 T 11-10-2018 APJL_0067 c69b9c6eee97c64decbab1b5c4550bab 328 SMART SM00382 32 239 1.9E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 SUPERFAMILY SSF52374 33 352 3.1E-102 T 11-10-2018 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 554 52.105 T 11-10-2018 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 65 78 1.4E-9 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 48 1.4E-9 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 50 61 1.4E-9 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 215 225 1.4E-9 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 Gene3D G3DSA:2.40.240.10 354 468 6.8E-45 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 33 343 8.9E-125 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 SUPERFAMILY SSF50715 346 552 8.37E-77 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 Gene3D G3DSA:3.40.50.620 35 252 5.3E-108 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 33 554 2.6E-303 T 11-10-2018 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 Gene3D G3DSA:2.40.240.10 469 552 1.1E-28 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 Gene3D G3DSA:1.10.1160.10 267 345 2.9E-33 T 11-10-2018 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily GO:0005524 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 Gene3D G3DSA:3.90.800.10 106 214 5.3E-108 T 11-10-2018 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 39 50 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0674 6bd66c088655594f61d8ca7dfbbd3a00 556 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 346 533 1.1E-60 T 11-10-2018 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 SUPERFAMILY SSF47729 1 91 7.36E-27 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 93 29.093 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 Gene3D G3DSA:4.10.520.10 1 92 1.5E-30 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.5E-26 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.4E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.4E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.4E-18 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 91 4.3E-41 T 11-10-2018 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 APJL_0741 ad882dcdd8b3fd85c1b107238256620b 93 SMART SM00411 1 91 2.5E-38 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 SMART SM00382 74 245 4.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 Gene3D G3DSA:3.40.50.300 43 284 5.0E-84 T 11-10-2018 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 ProSitePatterns PS00321 recA signature. 230 238 - T 11-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 21 341 1.7E-169 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 PRINTS PR00142 RecA protein signature 144 173 9.7E-85 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 PRINTS PR00142 RecA protein signature 227 255 9.7E-85 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 PRINTS PR00142 RecA protein signature 260 289 9.7E-85 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 PRINTS PR00142 RecA protein signature 314 331 9.7E-85 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 PRINTS PR00142 RecA protein signature 110 139 9.7E-85 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 PRINTS PR00142 RecA protein signature 182 211 9.7E-85 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 SUPERFAMILY SSF52540 22 284 4.68E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 Pfam PF00154 recA bacterial DNA recombination protein 24 285 3.2E-145 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 SUPERFAMILY SSF54752 285 342 2.35E-18 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 Hamap MF_00268 Protein RecA [recA]. 22 346 50.611 T 11-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 APJL_1163 7bd4701706ecdc5fcfa5c0b90d02ac13 376 Gene3D G3DSA:3.30.250.10 285 362 6.9E-24 T 11-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal APJL_1695 d8ae09c5681375993ed94aef11d99e33 322 TIGRFAM TIGR00824 EIIA-man: PTS system, mannose/fructose/sorbose family, IIA component 1 114 2.6E-38 T 11-10-2018 IPR013789 Phosphotransferase system, mannose family IIA component GO:0005737|GO:0008643|GO:0016773 APJL_1695 d8ae09c5681375993ed94aef11d99e33 322 Gene3D G3DSA:3.40.50.510 1 135 8.3E-35 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 APJL_1695 d8ae09c5681375993ed94aef11d99e33 322 SUPERFAMILY SSF52728 160 314 2.22E-49 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 APJL_1695 d8ae09c5681375993ed94aef11d99e33 322 Pfam PF03610 PTS system fructose IIA component 4 116 9.6E-26 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 APJL_1695 d8ae09c5681375993ed94aef11d99e33 322 SUPERFAMILY SSF53062 1 125 3.01E-33 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 APJL_1695 d8ae09c5681375993ed94aef11d99e33 322 Gene3D G3DSA:3.40.35.10 157 318 1.4E-51 T 11-10-2018 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily GO:0005737|GO:0008982|GO:0009401 APJL_1695 d8ae09c5681375993ed94aef11d99e33 322 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 161 310 5.7E-49 T 11-10-2018 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 APJL_1695 d8ae09c5681375993ed94aef11d99e33 322 Pfam PF03830 PTS system sorbose subfamily IIB component 162 309 3.5E-48 T 11-10-2018 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 APJL_0403 f13b79a956c2e9afcf978e5c98f74537 215 SUPERFAMILY SSF63380 92 193 4.51E-34 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APJL_0403 f13b79a956c2e9afcf978e5c98f74537 215 Pfam PF00677 Lumazine binding domain 3 86 8.2E-25 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0403 f13b79a956c2e9afcf978e5c98f74537 215 Pfam PF00677 Lumazine binding domain 99 183 6.0E-27 T 11-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0403 f13b79a956c2e9afcf978e5c98f74537 215 SUPERFAMILY SSF63380 1 89 1.11E-27 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APJL_0403 f13b79a956c2e9afcf978e5c98f74537 215 Gene3D G3DSA:2.40.30.20 1 88 1.9E-33 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_0403 f13b79a956c2e9afcf978e5c98f74537 215 Gene3D G3DSA:2.40.30.20 101 203 2.2E-35 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_0403 f13b79a956c2e9afcf978e5c98f74537 215 PIRSF PIRSF000498 1 210 2.8E-81 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_0403 f13b79a956c2e9afcf978e5c98f74537 215 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 197 1.3E-79 T 11-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 TIGRFAM TIGR00861 MIP: MIP family channel proteins 6 221 4.3E-62 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 Gene3D G3DSA:1.20.1080.10 1 228 7.8E-88 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 Hamap MF_01146 Aquaporin Z [aqpZ]. 1 228 35.834 T 11-10-2018 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 Pfam PF00230 Major intrinsic protein 2 221 4.0E-52 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 SUPERFAMILY SSF81338 1 225 1.96E-69 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 ProSitePatterns PS00221 MIP family signature. 60 68 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 PRINTS PR00783 Major intrinsic protein family signature 204 224 1.2E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 PRINTS PR00783 Major intrinsic protein family signature 135 153 1.2E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 PRINTS PR00783 Major intrinsic protein family signature 79 98 1.2E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 PRINTS PR00783 Major intrinsic protein family signature 165 187 1.2E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 PRINTS PR00783 Major intrinsic protein family signature 2 21 1.2E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_1479 a4aee7104b6638a7ffb29d918255c640 228 PRINTS PR00783 Major intrinsic protein family signature 42 66 1.2E-54 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_2043 6371e2faa8fc95bc17166fa4a79d06b5 331 Pfam PF00348 Polyprenyl synthetase 36 269 7.4E-72 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 APJL_2043 6371e2faa8fc95bc17166fa4a79d06b5 331 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 85 99 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site APJL_2043 6371e2faa8fc95bc17166fa4a79d06b5 331 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 207 219 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site APJL_2043 6371e2faa8fc95bc17166fa4a79d06b5 331 Gene3D G3DSA:1.10.600.10 2 330 8.7E-111 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APJL_2043 6371e2faa8fc95bc17166fa4a79d06b5 331 SUPERFAMILY SSF48576 8 331 1.06E-92 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 81 92 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 SUPERFAMILY SSF54686 3 133 3.66E-54 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 Gene3D G3DSA:3.90.1170.10 1 136 1.4E-54 T 11-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 3.0E-58 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 1.5E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 1.5E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 1.5E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 1.5E-40 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.5 T 11-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 1.4E-46 T 11-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 APJL_1802 f112738317ce40dafb606f6a1044fdb6 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 11-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0484 590384b4712db6a0776672fd3995ac42 496 Pfam PF01551 Peptidase family M23 369 463 1.3E-30 T 11-10-2018 IPR016047 Peptidase M23 APJL_0484 590384b4712db6a0776672fd3995ac42 496 Gene3D G3DSA:3.10.450.350 146 234 3.8E-6 T 11-10-2018 APJL_0484 590384b4712db6a0776672fd3995ac42 496 Gene3D G3DSA:2.70.70.10 340 469 1.3E-43 T 11-10-2018 IPR011055 Duplicated hybrid motif APJL_0484 590384b4712db6a0776672fd3995ac42 496 SUPERFAMILY SSF51261 219 465 1.31E-65 T 11-10-2018 IPR011055 Duplicated hybrid motif APJL_0484 590384b4712db6a0776672fd3995ac42 496 Gene3D G3DSA:3.10.450.350 235 338 1.4E-24 T 11-10-2018 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 SUPERFAMILY SSF55174 18 69 9.76E-11 T 11-10-2018 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 SUPERFAMILY SSF55120 78 321 1.42E-81 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 Pfam PF00849 RNA pseudouridylate synthase 92 242 1.9E-31 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 Gene3D G3DSA:3.10.290.10 2 76 1.0E-21 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 Gene3D G3DSA:3.30.2350.10 84 316 2.0E-73 T 11-10-2018 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 313 3.3E-107 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 SMART SM00363 18 83 1.5E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1141 a97cca196a50bfb5cdb70b6fc5e20f2a 325 Pfam PF01479 S4 domain 19 65 6.5E-9 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_0127 d7f7f36787a698926f9e482fde4b7202 121 PRINTS PR00332 Histidine triad family signature 10 26 6.5E-20 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APJL_0127 d7f7f36787a698926f9e482fde4b7202 121 PRINTS PR00332 Histidine triad family signature 31 49 6.5E-20 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APJL_0127 d7f7f36787a698926f9e482fde4b7202 121 PRINTS PR00332 Histidine triad family signature 99 109 6.5E-20 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APJL_0127 d7f7f36787a698926f9e482fde4b7202 121 SUPERFAMILY SSF54197 7 115 1.84E-33 T 11-10-2018 IPR036265 HIT-like superfamily APJL_0127 d7f7f36787a698926f9e482fde4b7202 121 Gene3D G3DSA:3.30.428.10 6 121 7.2E-34 T 11-10-2018 IPR036265 HIT-like superfamily APJL_0127 d7f7f36787a698926f9e482fde4b7202 121 ProSitePatterns PS00892 HIT domain signature. 92 110 - T 11-10-2018 IPR019808 Histidine triad, conserved site APJL_0127 d7f7f36787a698926f9e482fde4b7202 121 Pfam PF01230 HIT domain 16 112 2.3E-28 T 11-10-2018 IPR001310 Histidine triad (HIT) protein APJL_0028 a0ba648574a897c997f124b07cabfe0a 261 SUPERFAMILY SSF161098 64 252 7.85E-21 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0028 a0ba648574a897c997f124b07cabfe0a 261 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 256 6.1E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0028 a0ba648574a897c997f124b07cabfe0a 261 Gene3D G3DSA:1.10.3720.10 57 261 2.7E-18 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 11-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 SUPERFAMILY SSF52009 125 245 6.67E-37 T 11-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 9.8E-23 T 11-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 566 2.3E-239 T 11-10-2018 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 4.4E-30 T 11-10-2018 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 4.4E-30 T 11-10-2018 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 4.4E-30 T 11-10-2018 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 4.4E-30 T 11-10-2018 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 Pfam PF05524 PEP-utilising enzyme, N-terminal 3 126 9.0E-28 T 11-10-2018 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 11-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 SUPERFAMILY SSF51621 249 549 2.25E-109 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 541 8.7E-124 T 11-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 Gene3D G3DSA:1.10.274.10 21 146 8.3E-77 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 Gene3D G3DSA:3.20.20.60 234 572 5.8E-127 T 11-10-2018 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 Gene3D G3DSA:3.50.30.10 4 233 8.3E-77 T 11-10-2018 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 SUPERFAMILY SSF47831 25 143 3.27E-32 T 11-10-2018 IPR036618 PtsI, HPr-binding domain superfamily GO:0009401 APJL_1337 93ba0bcb6ab4a27996dd7519401e71a8 573 PIRSF PIRSF000732 1 573 1.1E-215 T 11-10-2018 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 APJL_1078 8a7ebdbbcaef07305f8ac6d2941cf606 124 Pfam PF04076 Bacterial OB fold (BOF) protein 27 122 6.1E-30 T 11-10-2018 IPR005220 Bacterial OB-fold APJL_1078 8a7ebdbbcaef07305f8ac6d2941cf606 124 SUPERFAMILY SSF101756 23 122 1.44E-30 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily APJL_1078 8a7ebdbbcaef07305f8ac6d2941cf606 124 Gene3D G3DSA:2.40.50.200 20 124 3.0E-30 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily APJL_1436 45ae98d68fd8de51d926a9cb8dd46bd0 470 Pfam PF01420 Type I restriction modification DNA specificity domain 301 465 2.1E-13 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APJL_1436 45ae98d68fd8de51d926a9cb8dd46bd0 470 Pfam PF01420 Type I restriction modification DNA specificity domain 53 209 1.1E-14 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APJL_1436 45ae98d68fd8de51d926a9cb8dd46bd0 470 Gene3D G3DSA:3.90.220.20 31 235 9.1E-27 T 11-10-2018 APJL_1436 45ae98d68fd8de51d926a9cb8dd46bd0 470 Gene3D G3DSA:3.90.220.20 283 470 7.9E-37 T 11-10-2018 APJL_1436 45ae98d68fd8de51d926a9cb8dd46bd0 470 SUPERFAMILY SSF116734 40 244 1.23E-35 T 11-10-2018 APJL_1436 45ae98d68fd8de51d926a9cb8dd46bd0 470 SUPERFAMILY SSF116734 292 469 2.62E-35 T 11-10-2018 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 SUPERFAMILY SSF48168 10 221 1.57E-69 T 11-10-2018 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 Gene3D G3DSA:1.10.1650.20 341 394 1.4E-152 T 11-10-2018 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 SUPERFAMILY SSF51998 222 740 4.27E-166 T 11-10-2018 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 142 219 6.0E-11 T 11-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 Pfam PF03477 ATP cone domain 6 92 6.9E-18 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 6.5E-179 T 11-10-2018 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 Gene3D G3DSA:3.20.70.20 209 732 1.4E-152 T 11-10-2018 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 731 1.2E-120 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 1.3E-36 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 1.3E-36 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 1.3E-36 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 1.3E-36 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 1.3E-36 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1009 722075111ce1ee4dbbfa02c34e705199 756 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 1.3E-36 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1646 8152375a516947bac61c0763b6f0aaf2 227 Pfam PF01730 UreF 35 184 4.9E-31 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 APJL_1646 8152375a516947bac61c0763b6f0aaf2 227 Gene3D G3DSA:1.10.4190.10 2 205 6.8E-62 T 11-10-2018 IPR038277 UreF domain superfamily APJL_1646 8152375a516947bac61c0763b6f0aaf2 227 Hamap MF_01385 Urease accessory protein UreF [ureF]. 3 227 27.108 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 APJL_1646 8152375a516947bac61c0763b6f0aaf2 227 PIRSF PIRSF009467 1 227 3.6E-71 T 11-10-2018 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 APJL_0421 cd587284347af7682e5208cdb77a943b 316 Pfam PF00639 PPIC-type PPIASE domain 177 269 2.1E-23 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 APJL_0421 cd587284347af7682e5208cdb77a943b 316 SUPERFAMILY SSF109998 29 195 7.85E-31 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily APJL_0421 cd587284347af7682e5208cdb77a943b 316 SUPERFAMILY SSF54534 169 269 2.55E-27 T 11-10-2018 APJL_0421 cd587284347af7682e5208cdb77a943b 316 Gene3D G3DSA:1.10.4030.30 29 295 3.8E-54 T 11-10-2018 APJL_0421 cd587284347af7682e5208cdb77a943b 316 Pfam PF09312 SurA N-terminal domain 39 133 5.7E-12 T 11-10-2018 IPR015391 SurA N-terminal APJL_0421 cd587284347af7682e5208cdb77a943b 316 Gene3D G3DSA:3.10.50.40 171 272 3.8E-54 T 11-10-2018 APJL_0421 cd587284347af7682e5208cdb77a943b 316 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 209 230 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 SMART SM00382 349 519 7.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 SMART SM00382 32 237 8.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 Pfam PF00005 ABC transporter 341 474 3.4E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 Pfam PF12848 ABC transporter 231 304 1.1E-13 T 11-10-2018 IPR032781 ABC-transporter extension domain APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 SUPERFAMILY SSF52540 305 532 1.46E-47 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 Gene3D G3DSA:3.40.50.300 287 556 2.4E-77 T 11-10-2018 APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 SUPERFAMILY SSF52540 12 244 7.36E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 Gene3D G3DSA:3.40.50.300 3 286 3.6E-90 T 11-10-2018 APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 3 554 5.8E-299 T 11-10-2018 IPR022374 Energy-dependent translational throttle protein EttA GO:0045900 APJL_1295 8775a2aa1b25d8c2236df8d73f912c7b 556 Pfam PF00005 ABC transporter 23 192 4.7E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 SMART SM00387 226 339 4.6E-35 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 PIRSF PIRSF003182 1 111 3.7E-29 T 11-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 PIRSF PIRSF003182 105 616 6.0E-199 T 11-10-2018 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Pfam PF00512 His Kinase A (phospho-acceptor) domain 115 178 1.4E-16 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Gene3D G3DSA:1.10.287.970 1 89 2.9E-29 T 11-10-2018 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Gene3D G3DSA:3.30.565.10 181 338 5.5E-46 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Gene3D G3DSA:1.10.287.130 104 180 1.4E-18 T 11-10-2018 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 SUPERFAMILY SSF47226 497 613 1.7E-16 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 SMART SM00448 353 469 6.5E-27 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 264 278 1.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 323 336 1.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 282 292 1.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 PRINTS PR00344 Bacterial sensor protein C-terminal signature 299 317 1.7E-14 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 SMART SM00388 114 179 8.9E-20 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 SUPERFAMILY SSF47384 105 179 3.92E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Pfam PF00072 Response regulator receiver domain 355 468 1.7E-19 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Gene3D G3DSA:1.20.120.160 489 615 8.4E-20 T 11-10-2018 IPR036641 HPT domain superfamily GO:0000160 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 SUPERFAMILY SSF52172 352 474 6.26E-30 T 11-10-2018 IPR011006 CheY-like superfamily APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Gene3D G3DSA:3.40.50.2300 339 474 9.0E-32 T 11-10-2018 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Pfam PF01627 Hpt domain 522 609 2.7E-7 T 11-10-2018 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160 APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 227 337 7.3E-30 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_0945 e1c03d677e255bffa16fb981982b39cb 616 SUPERFAMILY SSF55874 168 335 1.31E-43 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_0350 0e4d18620e056b2c16fa6e5390477ca7 286 Pfam PF03668 P-loop ATPase protein family 1 282 4.0E-130 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 APJL_0350 0e4d18620e056b2c16fa6e5390477ca7 286 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 282 40.697 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 APJL_0350 0e4d18620e056b2c16fa6e5390477ca7 286 Gene3D G3DSA:3.40.50.300 29 156 7.6E-8 T 11-10-2018 APJL_0350 0e4d18620e056b2c16fa6e5390477ca7 286 PIRSF PIRSF005052 1 285 1.8E-109 T 11-10-2018 IPR005337 RapZ-like family GO:0005524 APJL_0350 0e4d18620e056b2c16fa6e5390477ca7 286 SUPERFAMILY SSF52540 1 153 1.82E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 Gene3D G3DSA:1.10.260.40 3 59 1.3E-24 T 11-10-2018 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 Pfam PF13377 Periplasmic binding protein-like domain 168 331 1.3E-40 T 11-10-2018 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 SUPERFAMILY SSF53822 60 333 1.99E-90 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 7.0E-18 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 SUPERFAMILY SSF47413 1 59 1.74E-16 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.5E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.5E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 SMART SM00354 1 71 3.0E-35 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 335 62.713 T 11-10-2018 IPR023588 Transcription regulator HTH, PurR GO:0006355 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 Gene3D G3DSA:3.40.50.2300 69 323 1.6E-88 T 11-10-2018 APJL_0826 f3d46370f06227c5a758ca2825cbab99 336 Gene3D G3DSA:3.40.50.2300 160 324 1.6E-88 T 11-10-2018 APJL_1887 138e1d2511c848bf88119191d8500faf 330 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 16 324 6.7E-121 T 11-10-2018 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 APJL_1887 138e1d2511c848bf88119191d8500faf 330 Pfam PF13531 Bacterial extracellular solute-binding protein 38 277 7.9E-44 T 11-10-2018 APJL_1887 138e1d2511c848bf88119191d8500faf 330 Gene3D G3DSA:3.40.190.10 115 323 7.9E-120 T 11-10-2018 APJL_1887 138e1d2511c848bf88119191d8500faf 330 SUPERFAMILY SSF53850 20 325 5.83E-76 T 11-10-2018 APJL_1887 138e1d2511c848bf88119191d8500faf 330 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 147 155 - T 11-10-2018 IPR034408 Sulphate/thiosulphate-binding site GO:1901681 APJL_1887 138e1d2511c848bf88119191d8500faf 330 Gene3D G3DSA:3.40.190.10 27 292 7.9E-120 T 11-10-2018 APJL_1253 808b8b329fb1173979d668cb7d15f1b1 528 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 370 479 2.2E-20 T 11-10-2018 IPR025299 CstA, C-terminal domain APJL_1253 808b8b329fb1173979d668cb7d15f1b1 528 Pfam PF02554 Carbon starvation protein CstA 192 333 3.8E-16 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 APJL_1253 808b8b329fb1173979d668cb7d15f1b1 528 Pfam PF02554 Carbon starvation protein CstA 4 153 6.5E-32 T 11-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 APJL_0075 4f066f9cf42b8284b783001a1e67c638 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 3.8E-41 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family APJL_0075 4f066f9cf42b8284b783001a1e67c638 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 99 3.8E-35 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family APJL_0075 4f066f9cf42b8284b783001a1e67c638 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.777 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family APJL_0075 4f066f9cf42b8284b783001a1e67c638 109 Gene3D G3DSA:3.30.1310.10 1 109 1.2E-48 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily APJL_0075 4f066f9cf42b8284b783001a1e67c638 109 PIRSF PIRSF004555 4 109 2.7E-39 T 11-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family APJL_0075 4f066f9cf42b8284b783001a1e67c638 109 SUPERFAMILY SSF82607 11 103 9.29E-36 T 11-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily APJL_1126 b987d5663949093e40e42bb91cd45f12 824 PIRSF PIRSF000437 19 810 0.0 T 11-10-2018 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 APJL_1126 b987d5663949093e40e42bb91cd45f12 824 Pfam PF01553 Acyltransferase 279 421 1.4E-24 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APJL_1126 b987d5663949093e40e42bb91cd45f12 824 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 804 31.469 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 APJL_1126 b987d5663949093e40e42bb91cd45f12 824 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 12 796 0.0 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 APJL_1126 b987d5663949093e40e42bb91cd45f12 824 PIRSF PIRSF500064 2 812 0.0 T 11-10-2018 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109|Reactome: R-HSA-8931987|Reactome: R-HSA-9018519 APJL_1126 b987d5663949093e40e42bb91cd45f12 824 SMART SM00563 297 424 3.5E-30 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APJL_1126 b987d5663949093e40e42bb91cd45f12 824 SUPERFAMILY SSF69593 288 479 3.14E-24 T 11-10-2018 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 Gene3D G3DSA:1.10.3860.10 18 441 1.6E-104 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 Pfam PF00375 Sodium:dicarboxylate symporter family 29 437 2.0E-104 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 PRINTS PR00173 Glutamate-aspartate symporter signature 100 125 1.2E-26 T 11-10-2018 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 PRINTS PR00173 Glutamate-aspartate symporter signature 176 198 1.2E-26 T 11-10-2018 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 PRINTS PR00173 Glutamate-aspartate symporter signature 24 44 1.2E-26 T 11-10-2018 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 PRINTS PR00173 Glutamate-aspartate symporter signature 70 90 1.2E-26 T 11-10-2018 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 PRINTS PR00173 Glutamate-aspartate symporter signature 364 383 1.2E-26 T 11-10-2018 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 PRINTS PR00173 Glutamate-aspartate symporter signature 391 411 1.2E-26 T 11-10-2018 APJL_0600 1c4cb033bc95d50ff805c44cb788f8ad 441 SUPERFAMILY SSF118215 28 437 7.19E-95 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 SMART SM00354 8 81 7.6E-24 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 SUPERFAMILY SSF47413 10 65 5.12E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 10 58 1.5E-12 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 SUPERFAMILY SSF53822 68 327 1.76E-43 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 Pfam PF13407 Periplasmic binding protein domain 72 271 4.6E-8 T 11-10-2018 IPR025997 Periplasmic binding protein APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 10 339 1.0E-127 T 11-10-2018 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 Gene3D G3DSA:3.40.50.2300 70 158 1.9E-18 T 11-10-2018 APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 11 29 - T 11-10-2018 APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 Gene3D G3DSA:3.40.50.2300 162 339 1.9E-26 T 11-10-2018 APJL_2083 6224fcbc66ef6c7218a23ca0f93bb954 339 Gene3D G3DSA:1.10.260.40 9 69 1.2E-19 T 11-10-2018 APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 12 609 7.0E-204 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 SUPERFAMILY SSF52096 28 282 1.62E-23 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 Gene3D G3DSA:3.90.226.10 93 312 3.8E-157 T 11-10-2018 APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 Gene3D G3DSA:3.40.1750.10 184 496 3.8E-157 T 11-10-2018 APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 325 537 2.7E-54 T 11-10-2018 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 SUPERFAMILY SSF52096 321 526 6.47E-42 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 Pfam PF01343 Peptidase family S49 390 539 2.1E-45 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 Pfam PF01343 Peptidase family S49 136 287 4.3E-32 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 PIRSF PIRSF001217 1 618 1.1E-212 T 11-10-2018 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 APJL_1279 de2576956292d4393ae9bbd6a6c80ffc 618 Gene3D G3DSA:3.90.226.10 313 537 3.8E-157 T 11-10-2018 APJL_1271 f699b1964c1d25c4e16fc52ae26d31df 317 SUPERFAMILY SSF161098 28 302 3.66E-32 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1271 f699b1964c1d25c4e16fc52ae26d31df 317 Gene3D G3DSA:1.10.3720.10 70 313 5.4E-30 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1271 f699b1964c1d25c4e16fc52ae26d31df 317 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 18 310 2.7E-93 T 11-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 APJL_1271 f699b1964c1d25c4e16fc52ae26d31df 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 95 302 8.3E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0639 792ff8793bdd9ffb68eecc0aa63a090b 358 Pfam PF13609 Gram-negative porin 7 332 5.6E-37 T 11-10-2018 APJL_0639 792ff8793bdd9ffb68eecc0aa63a090b 358 SUPERFAMILY SSF56935 20 357 2.29E-51 T 11-10-2018 APJL_0639 792ff8793bdd9ffb68eecc0aa63a090b 358 Gene3D G3DSA:2.40.160.10 20 357 1.4E-47 T 11-10-2018 IPR023614 Porin domain superfamily APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 Pfam PF00271 Helicase conserved C-terminal domain 505 599 1.7E-7 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 SMART SM00490 503 600 1.6E-9 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 Gene3D G3DSA:1.10.8.630 11 120 1.8E-37 T 11-10-2018 APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 TIGRFAM TIGR00595 priA: primosomal protein N' 232 742 5.0E-192 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 Gene3D G3DSA:3.40.50.300 199 388 3.4E-74 T 11-10-2018 APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 Hamap MF_00983 Probable primosomal protein N' [priA]. 15 745 25.011 T 11-10-2018 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 SMART SM00487 207 402 1.4E-16 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 SUPERFAMILY SSF52540 225 611 5.54E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1050 ac0d6ad667ed1b18bbd0315aa0181570 746 Pfam PF00270 DEAD/DEAH box helicase 229 377 4.4E-17 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Gene3D G3DSA:3.30.559.10 386 632 7.6E-99 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 124 153 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 SUPERFAMILY SSF51230 100 191 5.37E-22 T 11-10-2018 IPR011053 Single hybrid motif APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 SUPERFAMILY SSF51230 2 92 3.66E-21 T 11-10-2018 IPR011053 Single hybrid motif APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Pfam PF02817 e3 binding domain 323 357 4.1E-14 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Gene3D G3DSA:4.10.320.10 322 366 1.7E-20 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 401 631 1.9E-80 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 SUPERFAMILY SSF47005 318 361 2.09E-12 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 SUPERFAMILY SSF51230 198 291 2.09E-24 T 11-10-2018 IPR011053 Single hybrid motif APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 188 632 6.9E-214 T 11-10-2018 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 222 251 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Pfam PF00364 Biotin-requiring enzyme 200 270 1.4E-22 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Pfam PF00364 Biotin-requiring enzyme 103 172 5.3E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Pfam PF00364 Biotin-requiring enzyme 3 74 1.3E-21 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Gene3D G3DSA:2.40.50.100 1 79 1.3E-20 T 11-10-2018 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Gene3D G3DSA:2.40.50.100 101 176 3.6E-20 T 11-10-2018 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 Gene3D G3DSA:2.40.50.100 198 276 1.1E-21 T 11-10-2018 APJL_0775 0437bce4d03c81aa4b278d3321444e25 632 SUPERFAMILY SSF52777 390 631 5.34E-81 T 11-10-2018 APJL_1425 acb2a025033e89286cabffd1598f6434 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-10-2018 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1425 acb2a025033e89286cabffd1598f6434 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.989 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 APJL_1425 acb2a025033e89286cabffd1598f6434 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 2.9E-72 T 11-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 APJL_1425 acb2a025033e89286cabffd1598f6434 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.1E-66 T 11-10-2018 IPR023798 Ribosomal protein S7 domain APJL_1425 acb2a025033e89286cabffd1598f6434 156 PIRSF PIRSF002122 2 156 1.0E-63 T 11-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 APJL_1425 acb2a025033e89286cabffd1598f6434 156 SUPERFAMILY SSF47973 5 149 4.06E-61 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily APJL_1425 acb2a025033e89286cabffd1598f6434 156 Gene3D G3DSA:1.10.455.10 2 155 1.3E-64 T 11-10-2018 IPR036823 Ribosomal protein S7 domain superfamily APJL_1931 5257175be4a95d82cca7d93e30e9946e 176 SUPERFAMILY SSF54523 6 95 8.63E-5 T 11-10-2018 APJL_0716 8034540a5f79bc40912517b72ec20377 313 SUPERFAMILY SSF81345 6 310 1.96E-51 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_0716 8034540a5f79bc40912517b72ec20377 313 Pfam PF01032 FecCD transport family 25 310 2.9E-49 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APJL_0716 8034540a5f79bc40912517b72ec20377 313 Gene3D G3DSA:1.10.3470.10 3 313 2.4E-50 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_0115 49c8a0ef5a1f5785b56ff745c8d136ba 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 6.8E-35 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0115 49c8a0ef5a1f5785b56ff745c8d136ba 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 APJL_0115 49c8a0ef5a1f5785b56ff745c8d136ba 90 Gene3D G3DSA:4.10.520.10 1 90 5.5E-38 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APJL_0115 49c8a0ef5a1f5785b56ff745c8d136ba 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 1.0E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0115 49c8a0ef5a1f5785b56ff745c8d136ba 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.0E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0115 49c8a0ef5a1f5785b56ff745c8d136ba 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 1.0E-19 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0115 49c8a0ef5a1f5785b56ff745c8d136ba 90 SUPERFAMILY SSF47729 1 90 1.77E-34 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APJL_0115 49c8a0ef5a1f5785b56ff745c8d136ba 90 SMART SM00411 1 90 1.1E-46 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0645 d317400c6a51d04929a184f913f9fea7 141 SUPERFAMILY SSF52402 1 137 2.77E-31 T 11-10-2018 APJL_0645 d317400c6a51d04929a184f913f9fea7 141 Gene3D G3DSA:3.40.50.620 1 141 2.2E-50 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0645 d317400c6a51d04929a184f913f9fea7 141 Pfam PF00582 Universal stress protein family 1 137 2.5E-19 T 11-10-2018 IPR006016 UspA APJL_0645 d317400c6a51d04929a184f913f9fea7 141 PIRSF PIRSF006276 1 140 7.3E-48 T 11-10-2018 IPR006015 Universal stress protein A APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 SUPERFAMILY SSF54534 90 241 1.92E-37 T 11-10-2018 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 Gene3D G3DSA:3.30.70.1050 1 115 5.9E-38 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 SUPERFAMILY SSF109998 248 427 6.97E-45 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 SUPERFAMILY SSF102735 1 131 5.62E-39 T 11-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 Hamap MF_00303 Trigger factor [tig]. 1 417 21.134 T 11-10-2018 IPR005215 Trigger factor GO:0015031 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 Gene3D G3DSA:3.10.50.40 150 246 2.2E-102 T 11-10-2018 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 PIRSF PIRSF003095 1 433 2.3E-120 T 11-10-2018 IPR005215 Trigger factor GO:0015031 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 261 411 3.4E-36 T 11-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 Gene3D G3DSA:1.10.3120.10 116 416 2.2E-102 T 11-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 157 237 4.4E-14 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 Pfam PF05697 Bacterial trigger factor protein (TF) 1 142 4.2E-40 T 11-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 APJL_1533 6bfecaf09ddfff13a2697f07ab9e3079 433 TIGRFAM TIGR00115 tig: trigger factor 11 410 3.4E-135 T 11-10-2018 IPR005215 Trigger factor GO:0015031 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 Gene3D G3DSA:3.40.50.720 176 323 3.9E-39 T 11-10-2018 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 434 28.881 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 SUPERFAMILY SSF51735 176 331 7.04E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0425 df49250acc34b793d1ff9de351c6df54 436 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 108 131 - T 11-10-2018 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 SUPERFAMILY SSF69075 333 434 3.4E-26 T 11-10-2018 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 186 322 9.5E-44 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase APJL_0425 df49250acc34b793d1ff9de351c6df54 436 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 170 1.3E-46 T 11-10-2018 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 PIRSF PIRSF000445 1 436 9.3E-144 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 3 432 3.9E-128 T 11-10-2018 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 SUPERFAMILY SSF69742 1 172 2.22E-43 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 336 430 5.2E-21 T 11-10-2018 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_0425 df49250acc34b793d1ff9de351c6df54 436 Gene3D G3DSA:3.30.460.30 1 172 2.6E-49 T 11-10-2018 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.277 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 SUPERFAMILY SSF50465 298 393 2.45E-36 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APJL_1538 49272c98cff91e49e04ca49317c4111c 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 2.9E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 SUPERFAMILY SSF50447 205 301 1.57E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_1538 49272c98cff91e49e04ca49317c4111c 394 SUPERFAMILY SSF52540 6 219 2.22E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1538 49272c98cff91e49e04ca49317c4111c 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 5.5E-34 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal APJL_1538 49272c98cff91e49e04ca49317c4111c 394 Gene3D G3DSA:2.40.30.10 206 334 2.1E-52 T 11-10-2018 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 Gene3D G3DSA:2.40.30.10 338 393 2.2E-30 T 11-10-2018 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 394 2.4E-238 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.0E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.2E-14 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 Gene3D G3DSA:3.40.50.300 1 203 1.3E-70 T 11-10-2018 APJL_1538 49272c98cff91e49e04ca49317c4111c 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 3.4E-5 T 11-10-2018 APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 3.4E-5 T 11-10-2018 APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 345 367 3.4E-5 T 11-10-2018 APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 Pfam PF03486 HI0933-like protein 4 390 2.1E-146 T 11-10-2018 APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 SUPERFAMILY SSF51905 1 394 1.58E-59 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 9.2E-8 T 11-10-2018 APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 9.2E-8 T 11-10-2018 APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 360 367 9.2E-8 T 11-10-2018 APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 Gene3D G3DSA:2.40.30.10 188 337 2.8E-131 T 11-10-2018 APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 Gene3D G3DSA:3.50.50.60 7 386 2.8E-131 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 389 1.1E-127 T 11-10-2018 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 Gene3D G3DSA:1.10.8.260 260 320 2.8E-131 T 11-10-2018 IPR023166 HI0933-like insert domain superfamily APJL_1238 92a0c3722e6ab707de9b726d8e9a5bde 395 SUPERFAMILY SSF160996 190 336 3.53E-43 T 11-10-2018 APJL_0312 974c456eab18c684ca568d1865b36592 129 Gene3D G3DSA:3.10.129.10 1 129 3.9E-40 T 11-10-2018 APJL_0312 974c456eab18c684ca568d1865b36592 129 PIRSF PIRSF003230 1 129 2.2E-48 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 APJL_0312 974c456eab18c684ca568d1865b36592 129 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 4 119 1.3E-40 T 11-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 APJL_0312 974c456eab18c684ca568d1865b36592 129 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 2 124 1.4E-49 T 11-10-2018 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 APJL_0312 974c456eab18c684ca568d1865b36592 129 SUPERFAMILY SSF54637 3 128 5.91E-40 T 11-10-2018 IPR029069 HotDog domain superfamily APJL_0312 974c456eab18c684ca568d1865b36592 129 ProSitePatterns PS01328 4-hydroxybenzoyl-CoA thioesterase family active site. 6 23 - T 11-10-2018 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site GO:0016787 APJL_0312 974c456eab18c684ca568d1865b36592 129 Pfam PF03061 Thioesterase superfamily 15 95 2.1E-16 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APJL_0280 8a85b72c3e0327373d63d689e796cdcd 251 Gene3D G3DSA:3.40.50.300 5 245 4.9E-60 T 11-10-2018 APJL_0280 8a85b72c3e0327373d63d689e796cdcd 251 SMART SM00382 33 219 1.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0280 8a85b72c3e0327373d63d689e796cdcd 251 SUPERFAMILY SSF52540 5 224 8.67E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0280 8a85b72c3e0327373d63d689e796cdcd 251 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0280 8a85b72c3e0327373d63d689e796cdcd 251 Pfam PF00005 ABC transporter 25 171 1.8E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1795 8186d619dabd0d2e3d61450c207aa353 208 Pfam PF00297 Ribosomal protein L3 65 181 8.9E-13 T 11-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1795 8186d619dabd0d2e3d61450c207aa353 208 Gene3D G3DSA:2.40.30.10 128 208 1.2E-16 T 11-10-2018 APJL_1795 8186d619dabd0d2e3d61450c207aa353 208 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 203 4.2E-91 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1795 8186d619dabd0d2e3d61450c207aa353 208 ProSitePatterns PS00474 Ribosomal protein L3 signature. 100 123 - T 11-10-2018 IPR019926 Ribosomal protein L3, conserved site APJL_1795 8186d619dabd0d2e3d61450c207aa353 208 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 206 40.407 T 11-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1795 8186d619dabd0d2e3d61450c207aa353 208 SUPERFAMILY SSF50447 1 207 5.56E-80 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_1795 8186d619dabd0d2e3d61450c207aa353 208 Gene3D G3DSA:2.40.50.620 32 94 7.3E-16 T 11-10-2018 APJL_1196 8259674f853c91ba38367c75559d355a 413 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 1 411 30.534 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 APJL_1196 8259674f853c91ba38367c75559d355a 413 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 1 397 2.7E-148 T 11-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 APJL_1196 8259674f853c91ba38367c75559d355a 413 Gene3D G3DSA:3.40.50.800 316 411 1.9E-22 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily APJL_1196 8259674f853c91ba38367c75559d355a 413 Gene3D G3DSA:3.30.930.10 1 311 9.5E-111 T 11-10-2018 APJL_1196 8259674f853c91ba38367c75559d355a 413 PIRSF PIRSF001549 1 413 4.8E-120 T 11-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 APJL_1196 8259674f853c91ba38367c75559d355a 413 SUPERFAMILY SSF52954 317 412 5.23E-23 T 11-10-2018 APJL_1196 8259674f853c91ba38367c75559d355a 413 SUPERFAMILY SSF55681 1 309 1.84E-95 T 11-10-2018 APJL_1196 8259674f853c91ba38367c75559d355a 413 Pfam PF03129 Anticodon binding domain 319 411 3.2E-13 T 11-10-2018 IPR004154 Anticodon-binding APJL_1196 8259674f853c91ba38367c75559d355a 413 Pfam PF13393 Histidyl-tRNA synthetase 2 301 6.9E-44 T 11-10-2018 APJL_0655 f56c2506ed3a489acd9c76d927df29dd 618 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 120 132 7.1E-16 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0655 f56c2506ed3a489acd9c76d927df29dd 618 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 385 407 7.1E-16 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0655 f56c2506ed3a489acd9c76d927df29dd 618 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 183 202 7.1E-16 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0655 f56c2506ed3a489acd9c76d927df29dd 618 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 408 422 7.1E-16 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0655 f56c2506ed3a489acd9c76d927df29dd 618 Pfam PF01555 DNA methylase 120 443 1.5E-46 T 11-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 APJL_0655 f56c2506ed3a489acd9c76d927df29dd 618 SUPERFAMILY SSF53335 87 461 8.63E-72 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0655 f56c2506ed3a489acd9c76d927df29dd 618 PIRSF PIRSF015855 1 618 3.8E-203 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0655 f56c2506ed3a489acd9c76d927df29dd 618 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 123 129 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 456 2.2E-135 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 Gene3D G3DSA:3.90.190.20 320 459 3.9E-36 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 Gene3D G3DSA:3.40.1390.10 1 81 2.7E-23 T 11-10-2018 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 SUPERFAMILY SSF63418 1 95 5.49E-25 T 11-10-2018 IPR035911 MurE/MurF, N-terminal APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 SUPERFAMILY SSF53244 321 456 1.16E-31 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 Pfam PF08245 Mur ligase middle domain 107 300 3.5E-43 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 Gene3D G3DSA:3.40.1190.10 82 318 1.6E-71 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 457 31.319 T 11-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 SUPERFAMILY SSF53623 101 317 4.58E-49 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 Pfam PF01225 Mur ligase family, catalytic domain 30 93 1.6E-5 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APJL_0015 239ee6af6388db724ae7e9aacf90d1c2 464 Pfam PF02875 Mur ligase family, glutamate ligase domain 321 401 1.3E-13 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 SUPERFAMILY SSF52172 5 136 2.7E-35 T 11-10-2018 IPR011006 CheY-like superfamily APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 Gene3D G3DSA:3.40.50.12740 6 207 5.5E-67 T 11-10-2018 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 202 5.4E-27 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 3.4E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 3.4E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 3.4E-16 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 Pfam PF00072 Response regulator receiver domain 7 118 3.7E-28 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 SMART SM00421 146 203 5.2E-27 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 SMART SM00448 5 118 2.9E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_0059 f0b1c11ca5e78e6a14b5d72662cb936a 209 SUPERFAMILY SSF46894 131 205 1.16E-23 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APJL_0980 3227852d05acb12955830c102a10b2f5 590 Gene3D G3DSA:2.40.160.50 205 590 8.9E-96 T 11-10-2018 APJL_0980 3227852d05acb12955830c102a10b2f5 590 Pfam PF17287 POTRA domain 186 228 4.4E-15 T 11-10-2018 IPR035251 ShlB, POTRA domain APJL_0980 3227852d05acb12955830c102a10b2f5 590 Pfam PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB 237 554 6.4E-105 T 11-10-2018 IPR005565 Haemolysin activator HlyB, C-terminal APJL_0980 3227852d05acb12955830c102a10b2f5 590 Pfam PF08479 POTRA domain, ShlB-type 114 169 1.6E-13 T 11-10-2018 IPR013686 Polypeptide-transport-associated, ShlB-type APJL_0980 3227852d05acb12955830c102a10b2f5 590 PIRSF PIRSF029745 1 590 5.1E-145 T 11-10-2018 IPR027282 Two partner secretion pathway transporter GO:0015031 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 SMART SM00382 99 301 6.0E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.413 T 11-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 SMART SM00963 1 86 5.6E-35 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 Gene3D G3DSA:1.10.260.30 328 453 8.5E-44 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 8.1E-177 T 11-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 9.8E-75 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.4E-21 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 SUPERFAMILY SSF47446 328 430 1.96E-37 T 11-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 Gene3D G3DSA:3.40.50.300 90 285 7.6E-123 T 11-10-2018 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 Pfam PF02978 Signal peptide binding domain 329 427 2.4E-32 T 11-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 SUPERFAMILY SSF52540 42 353 3.85E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 SMART SM00962 100 296 1.4E-116 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1778 032803bee9a1b8a27c3bff2c448b8215 463 Gene3D G3DSA:1.20.120.140 4 305 7.6E-123 T 11-10-2018 APJL_0475 38275edd692f60c59cb5545d10d04f54 135 SUPERFAMILY SSF81273 93 135 1.88E-11 T 11-10-2018 APJL_0475 38275edd692f60c59cb5545d10d04f54 135 SMART SM00528 88 135 2.7E-24 T 11-10-2018 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 APJL_0475 38275edd692f60c59cb5545d10d04f54 135 Gene3D G3DSA:1.10.287.1050 1 95 4.6E-22 T 11-10-2018 IPR027454 Histone-like protein H-NS, N-terminal GO:0046983 APJL_0475 38275edd692f60c59cb5545d10d04f54 135 Gene3D G3DSA:4.10.430.10 96 135 5.9E-24 T 11-10-2018 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily GO:0003677 APJL_0475 38275edd692f60c59cb5545d10d04f54 135 Pfam PF00816 H-NS histone family 45 129 8.1E-20 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 APJL_0475 38275edd692f60c59cb5545d10d04f54 135 SUPERFAMILY SSF81273 2 56 1.73E-14 T 11-10-2018 APJL_0475 38275edd692f60c59cb5545d10d04f54 135 PIRSF PIRSF002096 1 135 6.1E-49 T 11-10-2018 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 APJL_0548 b67ea56d1ea1bbffafd373dbfd438b90 462 Pfam PF00263 Bacterial type II and III secretion system protein 256 414 1.8E-37 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 APJL_0548 b67ea56d1ea1bbffafd373dbfd438b90 462 Pfam PF13629 Pilus formation protein N terminal region 27 97 3.2E-16 T 11-10-2018 IPR032789 Pilus formation protein, N-terminal APJL_0548 b67ea56d1ea1bbffafd373dbfd438b90 462 PRINTS PR00811 Bacterial general secretion pathway protein D signature 193 203 1.4E-13 T 11-10-2018 IPR001775 GspD/PilQ family APJL_0548 b67ea56d1ea1bbffafd373dbfd438b90 462 PRINTS PR00811 Bacterial general secretion pathway protein D signature 379 397 1.4E-13 T 11-10-2018 IPR001775 GspD/PilQ family APJL_0548 b67ea56d1ea1bbffafd373dbfd438b90 462 PRINTS PR00811 Bacterial general secretion pathway protein D signature 252 276 1.4E-13 T 11-10-2018 IPR001775 GspD/PilQ family APJL_0548 b67ea56d1ea1bbffafd373dbfd438b90 462 PRINTS PR01032 Gene IV protein signature 395 417 3.7E-6 T 11-10-2018 APJL_0548 b67ea56d1ea1bbffafd373dbfd438b90 462 PRINTS PR01032 Gene IV protein signature 236 259 3.7E-6 T 11-10-2018 APJL_0548 b67ea56d1ea1bbffafd373dbfd438b90 462 PRINTS PR01032 Gene IV protein signature 342 370 3.7E-6 T 11-10-2018 APJL_0544 d596d6f0170570adbce996bea840f0c1 295 Gene3D G3DSA:1.20.81.30 112 232 2.0E-6 T 11-10-2018 APJL_0544 d596d6f0170570adbce996bea840f0c1 295 Pfam PF00482 Type II secretion system (T2SS), protein F 128 252 8.9E-21 T 11-10-2018 IPR018076 Type II secretion system F domain APJL_1484 7a6b3a8b68dc1577fe0ee3088d1bd96f 113 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 113 35.764 T 11-10-2018 IPR023063 FeS cluster insertion protein ErpA GO:0097428 APJL_1484 7a6b3a8b68dc1577fe0ee3088d1bd96f 113 Gene3D G3DSA:2.60.300.12 8 103 3.9E-34 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APJL_1484 7a6b3a8b68dc1577fe0ee3088d1bd96f 113 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 8 112 4.4E-38 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 APJL_1484 7a6b3a8b68dc1577fe0ee3088d1bd96f 113 Pfam PF01521 Iron-sulphur cluster biosynthesis 8 108 8.3E-21 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 APJL_1484 7a6b3a8b68dc1577fe0ee3088d1bd96f 113 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 94 111 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 APJL_1484 7a6b3a8b68dc1577fe0ee3088d1bd96f 113 SUPERFAMILY SSF89360 7 102 3.4E-31 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 Gene3D G3DSA:1.10.8.280 287 402 6.8E-245 T 11-10-2018 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 Gene3D G3DSA:3.30.190.20 130 244 6.8E-245 T 11-10-2018 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 Gene3D G3DSA:1.20.1580.10 692 829 1.0E-141 T 11-10-2018 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 Gene3D G3DSA:3.40.50.300 612 935 1.0E-141 T 11-10-2018 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 4 924 0.0 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 Gene3D G3DSA:1.20.1580.10 90 491 6.8E-245 T 11-10-2018 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 SUPERFAMILY SSF52540 611 910 8.67E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 Gene3D G3DSA:3.40.50.300 6 594 6.8E-245 T 11-10-2018 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 939 22.815 T 11-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 ProSitePatterns PS00211 ABC transporters family signature. 829 843 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 Pfam PF00005 ABC transporter 792 859 5.2E-5 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0786 a2f3a9f053460cdb0c1f8ff168464579 942 SUPERFAMILY SSF52540 1 568 8.14E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1258 2d97188593b3d3a7f7244683324c47e5 97 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 94 8.7E-16 T 11-10-2018 IPR008407 Branched-chain amino acid transport, AzlD APJL_1898 f451edb555e006fc2d0089f50b2b8040 413 Pfam PF04403 Paraquat-inducible protein A 250 404 6.5E-42 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like APJL_1898 f451edb555e006fc2d0089f50b2b8040 413 Pfam PF04403 Paraquat-inducible protein A 48 197 1.4E-38 T 11-10-2018 IPR007498 Intermembrane transport protein PqiA-like APJL_1898 f451edb555e006fc2d0089f50b2b8040 413 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 6 404 7.3E-143 T 11-10-2018 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type APJL_1818 bf94b8a89cbcb7b74d134afee1f328c4 129 Pfam PF00411 Ribosomal protein S11 19 128 3.5E-54 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APJL_1818 bf94b8a89cbcb7b74d134afee1f328c4 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 7 129 32.851 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APJL_1818 bf94b8a89cbcb7b74d134afee1f328c4 129 Gene3D G3DSA:3.30.420.80 1 129 2.1E-58 T 11-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1818 bf94b8a89cbcb7b74d134afee1f328c4 129 PIRSF PIRSF002131 1 129 1.7E-53 T 11-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 APJL_1818 bf94b8a89cbcb7b74d134afee1f328c4 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 3.3E-56 T 11-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1818 bf94b8a89cbcb7b74d134afee1f328c4 129 SUPERFAMILY SSF53137 15 129 2.55E-48 T 11-10-2018 APJL_1818 bf94b8a89cbcb7b74d134afee1f328c4 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 11-10-2018 IPR018102 Ribosomal S11, conserved site APJL_1683 7c328c2610b6ff324ebf6b01594159cd 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 138 12.991 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APJL_1683 7c328c2610b6ff324ebf6b01594159cd 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 7.1E-35 T 11-10-2018 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APJL_1683 7c328c2610b6ff324ebf6b01594159cd 156 SUPERFAMILY SSF81573 63 121 4.05E-13 T 11-10-2018 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily APJL_1683 7c328c2610b6ff324ebf6b01594159cd 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 6.3E-53 T 11-10-2018 IPR005864 ATP synthase, F0 complex, subunit b, bacterial GO:0015078|GO:0015986|GO:0045263 APJL_1683 7c328c2610b6ff324ebf6b01594159cd 156 Gene3D G3DSA:1.20.5.620 61 122 2.0E-18 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 Gene3D G3DSA:2.40.30.170 246 329 2.6E-15 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 Gene3D G3DSA:2.40.50.100 211 244 2.6E-15 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 323 338 2.9E-5 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 55 75 2.9E-5 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 SUPERFAMILY SSF111369 42 132 9.02E-8 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 SUPERFAMILY SSF111369 169 264 4.32E-8 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 Pfam PF13437 HlyD family secretion protein 211 306 4.4E-10 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 Gene3D G3DSA:1.10.287.470 110 196 2.6E-15 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 Gene3D G3DSA:1.10.287.470 78 109 6.3E-13 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 Gene3D G3DSA:2.40.50.100 43 77 6.3E-13 T 11-10-2018 APJL_0845 9276bded001287b62d01b23f951ff0f5 353 Pfam PF13533 Biotin-lipoyl like 45 92 9.5E-9 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APJL_2059 cb65bbd935a4a4546ad72f42d275b917 209 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 179 192 - T 11-10-2018 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APJL_2059 cb65bbd935a4a4546ad72f42d275b917 209 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 169 209 1.2E-19 T 11-10-2018 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APJL_2059 cb65bbd935a4a4546ad72f42d275b917 209 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 9 209 38.499 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APJL_2059 cb65bbd935a4a4546ad72f42d275b917 209 Gene3D G3DSA:2.30.110.10 2 209 2.9E-79 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APJL_2059 cb65bbd935a4a4546ad72f42d275b917 209 SUPERFAMILY SSF50475 6 209 3.74E-63 T 11-10-2018 APJL_2059 cb65bbd935a4a4546ad72f42d275b917 209 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 1 209 1.9E-91 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APJL_2059 cb65bbd935a4a4546ad72f42d275b917 209 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 34 117 2.7E-21 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APJL_2059 cb65bbd935a4a4546ad72f42d275b917 209 PIRSF PIRSF000190 1 209 2.1E-77 T 11-10-2018 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0010181 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 SUPERFAMILY SSF54821 107 206 1.7E-41 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 Gene3D G3DSA:3.30.1140.32 108 208 3.1E-46 T 11-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 Gene3D G3DSA:3.30.300.20 17 107 3.9E-30 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 3.9E-42 T 11-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 4.1E-101 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.529 T 11-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 SUPERFAMILY SSF54814 2 106 3.92E-37 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 11-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 Pfam PF07650 KH domain 38 111 1.5E-19 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1801 50b5ac1c1aa6676f693c6a13629325e7 235 SMART SM00322 60 125 3.3E-8 T 11-10-2018 IPR004087 K Homology domain GO:0003676 APJL_1513 bdf8a15c6f0b99a47cca2ea25d4d091a 248 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 178 1.5E-43 T 11-10-2018 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|MetaCyc: PWY-7782|Reactome: R-HSA-1483166 APJL_1513 bdf8a15c6f0b99a47cca2ea25d4d091a 248 SMART SM00563 65 180 6.3E-41 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APJL_1513 bdf8a15c6f0b99a47cca2ea25d4d091a 248 SUPERFAMILY SSF69593 6 237 2.48E-50 T 11-10-2018 APJL_1513 bdf8a15c6f0b99a47cca2ea25d4d091a 248 Pfam PF01553 Acyltransferase 62 178 2.1E-32 T 11-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 APJL_1497 9ee71a3667c034ad6fa3a6fb68ddad37 357 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 326 1.9E-95 T 11-10-2018 IPR016040 NAD(P)-binding domain APJL_1497 9ee71a3667c034ad6fa3a6fb68ddad37 357 Gene3D G3DSA:3.40.50.720 2 325 6.3E-136 T 11-10-2018 APJL_1497 9ee71a3667c034ad6fa3a6fb68ddad37 357 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 2 340 1.3E-157 T 11-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 APJL_1497 9ee71a3667c034ad6fa3a6fb68ddad37 357 Gene3D G3DSA:3.90.25.10 201 334 6.3E-136 T 11-10-2018 APJL_1497 9ee71a3667c034ad6fa3a6fb68ddad37 357 SUPERFAMILY SSF51735 1 338 1.18E-92 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0243 8501f266270ba9cef3267dea53315818 108 ProDom PD067723 PM1220 PRECURSOR HI0908 SIGNAL 15 106 0.002 T 11-10-2018 IPR020508 Protein of unknown function DUF2547 APJL_0243 8501f266270ba9cef3267dea53315818 108 Pfam PF10818 Protein of unknown function (DUF2547) 12 107 5.8E-33 T 11-10-2018 IPR020508 Protein of unknown function DUF2547 APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 SUPERFAMILY SSF102114 46 422 1.31E-75 T 11-10-2018 APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 Pfam PF06228 Haem utilisation ChuX/HutX 464 595 3.5E-28 T 11-10-2018 IPR010413 Heme utilization carrier protein HutX-like APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 Pfam PF04055 Radical SAM superfamily 57 220 8.4E-20 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 Gene3D G3DSA:3.40.1570.10 423 604 2.2E-48 T 11-10-2018 APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 SUPERFAMILY SSF144064 439 602 1.18E-45 T 11-10-2018 APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 TIGRFAM TIGR04107 rSAM_HutW: putative heme utilization radical SAM enzyme HutW 15 425 2.1E-161 T 11-10-2018 IPR026332 Putative heme utilization radical SAM enzyme HutW APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 TIGRFAM TIGR04108 HutX: putative heme utilization carrier protein HutX 446 601 5.8E-60 T 11-10-2018 IPR010413 Heme utilization carrier protein HutX-like APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 SMART SM00729 52 272 1.8E-39 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APJL_1549 cd28d6879d0f2e67a7aa4b1d2f72aaf0 605 Gene3D G3DSA:3.80.30.20 27 349 1.8E-74 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APJL_0638 d7eaea34811dff9cd3790e7f443cf042 203 Gene3D G3DSA:3.20.20.70 1 139 2.7E-36 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0638 d7eaea34811dff9cd3790e7f443cf042 203 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 3 184 2.1E-37 T 11-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 APJL_0638 d7eaea34811dff9cd3790e7f443cf042 203 SUPERFAMILY SSF51690 17 201 7.46E-20 T 11-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 APJL_1889 b6ca1595b2e1db8486c9ad0544092679 271 Gene3D G3DSA:1.10.3720.10 12 270 2.9E-59 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1889 b6ca1595b2e1db8486c9ad0544092679 271 SUPERFAMILY SSF161098 13 264 2.75E-50 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1889 b6ca1595b2e1db8486c9ad0544092679 271 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 10 265 9.4E-91 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APJL_1889 b6ca1595b2e1db8486c9ad0544092679 271 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 269 1.2E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1889 b6ca1595b2e1db8486c9ad0544092679 271 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 13 269 4.9E-111 T 11-10-2018 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 APJL_1911 990aca2077245674baf12d948c9afa50 212 SUPERFAMILY SSF52833 26 201 1.93E-44 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1911 990aca2077245674baf12d948c9afa50 212 ProSitePatterns PS00194 Thioredoxin family active site. 47 65 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APJL_1911 990aca2077245674baf12d948c9afa50 212 Pfam PF01323 DSBA-like thioredoxin domain 47 184 2.6E-24 T 11-10-2018 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590|Reactome: R-HSA-9033241 APJL_1911 990aca2077245674baf12d948c9afa50 212 Gene3D G3DSA:3.40.30.10 25 212 3.7E-50 T 11-10-2018 APJL_1911 990aca2077245674baf12d948c9afa50 212 PIRSF PIRSF001488 1 212 2.6E-70 T 11-10-2018 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL APJL_0464 e06016faef7a3267faf293c079701540 428 Pfam PF12002 MgsA AAA+ ATPase C terminal 248 414 1.6E-67 T 11-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal APJL_0464 e06016faef7a3267faf293c079701540 428 Gene3D G3DSA:1.20.272.10 221 325 6.3E-43 T 11-10-2018 APJL_0464 e06016faef7a3267faf293c079701540 428 SUPERFAMILY SSF48019 232 414 5.67E-74 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APJL_0464 e06016faef7a3267faf293c079701540 428 SMART SM00382 30 146 7.3E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0464 e06016faef7a3267faf293c079701540 428 SUPERFAMILY SSF52540 1 211 4.05E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0464 e06016faef7a3267faf293c079701540 428 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 1 125 1.9E-16 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 APJL_0464 e06016faef7a3267faf293c079701540 428 Pfam PF16193 AAA C-terminal domain 169 247 6.1E-23 T 11-10-2018 IPR032423 AAA C-terminal domain APJL_0464 e06016faef7a3267faf293c079701540 428 Gene3D G3DSA:3.40.50.300 1 144 1.5E-44 T 11-10-2018 APJL_0464 e06016faef7a3267faf293c079701540 428 Gene3D G3DSA:1.10.3710.10 326 427 2.9E-38 T 11-10-2018 APJL_0464 e06016faef7a3267faf293c079701540 428 Gene3D G3DSA:1.10.8.60 146 220 2.7E-21 T 11-10-2018 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 SMART SM00478 51 202 2.7E-48 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 204 220 1.3E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 ProSitePatterns PS01155 Endonuclease III family signature. 114 143 - T 11-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 Pfam PF00633 Helix-hairpin-helix motif 112 139 2.2E-6 T 11-10-2018 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 Pfam PF14815 NUDIX domain 245 369 6.5E-20 T 11-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 204 220 - T 11-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 SMART SM00525 203 223 1.3E-4 T 11-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 SUPERFAMILY SSF48150 16 237 8.17E-76 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 18 287 4.2E-125 T 11-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 SUPERFAMILY SSF55811 232 371 1.12E-19 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 Gene3D G3DSA:1.10.1670.10 21 223 6.8E-87 T 11-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 Gene3D G3DSA:3.90.79.10 235 374 2.5E-14 T 11-10-2018 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 48 180 2.3E-20 T 11-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 APJL_1775 36bf585ff49b2e38cbb1af6bbad1fe2d 381 Gene3D G3DSA:1.10.340.30 33 144 6.8E-87 T 11-10-2018 APJL_0527 6bb98c89dd75165af2f92c2a3b56967d 381 SMART SM00876 263 367 7.7E-34 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APJL_0527 6bb98c89dd75165af2f92c2a3b56967d 381 SUPERFAMILY SSF102114 44 369 1.31E-51 T 11-10-2018 APJL_0527 6bb98c89dd75165af2f92c2a3b56967d 381 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 263 366 7.9E-23 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APJL_0527 6bb98c89dd75165af2f92c2a3b56967d 381 Gene3D G3DSA:3.20.20.70 22 371 4.5E-106 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0527 6bb98c89dd75165af2f92c2a3b56967d 381 Pfam PF04055 Radical SAM superfamily 87 223 2.1E-9 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_0527 6bb98c89dd75165af2f92c2a3b56967d 381 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 9 373 8.5E-162 T 11-10-2018 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 Pfam PF01872 RibD C-terminal domain 147 356 4.1E-63 T 11-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 Gene3D G3DSA:3.40.430.10 142 362 2.4E-75 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 50 88 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 SUPERFAMILY SSF53927 3 144 3.58E-47 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 PIRSF PIRSF006769 1 363 5.1E-159 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 SUPERFAMILY SSF53597 144 356 8.0E-60 T 11-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 3 99 1.9E-20 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 Gene3D G3DSA:3.40.140.10 1 141 1.2E-47 T 11-10-2018 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 7 356 1.2E-115 T 11-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 APJL_0402 f184087104db3a23fdb21ce32c4d7932 364 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 145 359 8.7E-70 T 11-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 Pfam PF00005 ABC transporter 17 178 2.5E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 Gene3D G3DSA:3.40.50.300 276 538 1.4E-54 T 11-10-2018 APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 SUPERFAMILY SSF52540 2 235 8.89E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 SMART SM00382 26 223 3.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 SMART SM00382 337 501 2.4E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 Gene3D G3DSA:3.40.50.300 8 274 4.4E-58 T 11-10-2018 APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 Pfam PF12848 ABC transporter 217 296 3.6E-28 T 11-10-2018 IPR032781 ABC-transporter extension domain APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 Pfam PF00005 ABC transporter 328 459 1.1E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 SUPERFAMILY SSF52540 294 515 3.38E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0322 b8c3b2b4a0f6b9544e1724c985fccdcd 638 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1564 65862d2f0b856b4ec8eab2e3afb8bcee 293 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 292 33.017 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APJL_1564 65862d2f0b856b4ec8eab2e3afb8bcee 293 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 286 4.2E-121 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APJL_1564 65862d2f0b856b4ec8eab2e3afb8bcee 293 SUPERFAMILY SSF53335 65 291 6.31E-43 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1564 65862d2f0b856b4ec8eab2e3afb8bcee 293 PIRSF PIRSF000401 1 293 3.3E-96 T 11-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 APJL_1564 65862d2f0b856b4ec8eab2e3afb8bcee 293 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 292 7.4E-106 T 11-10-2018 APJL_1564 65862d2f0b856b4ec8eab2e3afb8bcee 293 Gene3D G3DSA:3.40.50.150 101 293 1.4E-57 T 11-10-2018 APJL_1402 59bff958a8be743f84ebd445a950bc0b 316 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 316 1.2E-143 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APJL_1402 59bff958a8be743f84ebd445a950bc0b 316 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 227 315 1.5E-35 T 11-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APJL_1402 59bff958a8be743f84ebd445a950bc0b 316 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 182 1.4E-31 T 11-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APJL_1402 59bff958a8be743f84ebd445a950bc0b 316 SUPERFAMILY SSF53901 3 316 9.29E-67 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_1402 59bff958a8be743f84ebd445a950bc0b 316 Gene3D G3DSA:3.40.47.10 1 170 8.1E-70 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_1402 59bff958a8be743f84ebd445a950bc0b 316 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 316 67.841 T 11-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 APJL_1402 59bff958a8be743f84ebd445a950bc0b 316 Gene3D G3DSA:3.40.47.10 171 316 1.3E-48 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_1595 54cd0c1155e76d495d700800154c6369 131 SUPERFAMILY SSF63829 7 107 4.58E-19 T 11-10-2018 APJL_1595 54cd0c1155e76d495d700800154c6369 131 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 17 77 2.0E-9 T 11-10-2018 IPR013658 SMP-30/Gluconolactonase/LRE-like region APJL_1595 54cd0c1155e76d495d700800154c6369 131 Gene3D G3DSA:2.120.10.30 2 126 2.1E-37 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Gene3D G3DSA:3.40.50.300 1 187 1.7E-72 T 11-10-2018 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 SUPERFAMILY SSF54980 294 372 2.77E-18 T 11-10-2018 IPR035647 EF-G domain III/V-like APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 PRINTS PR00315 GTP-binding elongation factor signature 51 59 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 PRINTS PR00315 GTP-binding elongation factor signature 128 137 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 PRINTS PR00315 GTP-binding elongation factor signature 8 21 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 PRINTS PR00315 GTP-binding elongation factor signature 76 86 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 PRINTS PR00315 GTP-binding elongation factor signature 92 103 3.8E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 310.131 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 SUPERFAMILY SSF52540 2 237 4.69E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Gene3D G3DSA:3.30.70.870 288 369 5.9E-35 T 11-10-2018 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Gene3D G3DSA:2.40.30.10 188 287 1.7E-36 T 11-10-2018 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Pfam PF03144 Elongation factor Tu domain 2 207 277 2.3E-12 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Gene3D G3DSA:3.30.70.3380 370 480 4.5E-39 T 11-10-2018 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 SUPERFAMILY SSF54980 401 495 4.22E-24 T 11-10-2018 IPR035647 EF-G domain III/V-like APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Pfam PF00009 Elongation factor Tu GTP binding domain 5 183 9.1E-54 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Gene3D G3DSA:3.30.70.2570 481 555 6.3E-34 T 11-10-2018 IPR038363 LepA, C-terminal domain superfamily APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Pfam PF06421 GTP-binding protein LepA C-terminus 489 594 1.5E-49 T 11-10-2018 IPR013842 GTP-binding protein LepA, C-terminal APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 Pfam PF00679 Elongation factor G C-terminus 401 485 1.3E-18 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 TIGRFAM TIGR01393 lepA: elongation factor 4 4 596 0.0 T 11-10-2018 IPR006297 Elongation factor 4 GO:0005525 APJL_0534 058faabf83706154e5a8ca2262bc1f2d 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 175 3.8E-17 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_0659 b3a7a1a7b347b25844c78f585959c566 129 SUPERFAMILY SSF88723 1 128 3.08E-36 T 11-10-2018 IPR029060 PIN-like domain superfamily APJL_0659 b3a7a1a7b347b25844c78f585959c566 129 Gene3D G3DSA:3.40.50.1010 1 127 1.8E-33 T 11-10-2018 APJL_0659 b3a7a1a7b347b25844c78f585959c566 129 Pfam PF01850 PIN domain 2 117 3.3E-14 T 11-10-2018 IPR002716 PIN domain APJL_1333 176074e889e67a9e84ca22f906b69942 473 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 APJL_1333 176074e889e67a9e84ca22f906b69942 473 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 36 110 1.6E-14 T 11-10-2018 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 APJL_1333 176074e889e67a9e84ca22f906b69942 473 Pfam PF02378 Phosphotransferase system, EIIC 111 410 1.4E-48 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 APJL_1333 176074e889e67a9e84ca22f906b69942 473 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 3 464 5.0E-182 T 11-10-2018 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 APJL_1333 176074e889e67a9e84ca22f906b69942 473 Gene3D G3DSA:3.30.1360.60 1 78 4.3E-25 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 APJL_1333 176074e889e67a9e84ca22f906b69942 473 Pfam PF00367 phosphotransferase system, EIIB 11 41 1.4E-14 T 11-10-2018 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 APJL_1333 176074e889e67a9e84ca22f906b69942 473 SUPERFAMILY SSF55604 6 82 3.4E-21 T 11-10-2018 IPR036878 Glucose permease domain IIB GO:0008982|GO:0009401 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 Gene3D G3DSA:2.40.50.140 90 153 3.1E-27 T 11-10-2018 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 Pfam PF09285 Elongation factor P, C-terminal 155 210 4.8E-26 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 SUPERFAMILY SSF50249 154 211 1.18E-18 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 Gene3D G3DSA:2.30.30.30 23 89 2.1E-25 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 29 86 3.9E-23 T 11-10-2018 IPR013185 Translation elongation factor, KOW-like APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 Hamap MF_00141 Elongation factor P [efp]. 27 211 49.182 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 ProSitePatterns PS01275 Elongation factor P signature. 176 195 - T 11-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 SMART SM01185 93 147 3.9E-22 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 SUPERFAMILY SSF50249 93 152 9.85E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 Pfam PF01132 Elongation factor P (EF-P) OB domain 95 147 3.7E-20 T 11-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 TIGRFAM TIGR00038 efp: translation elongation factor P 28 211 1.9E-76 T 11-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 Gene3D G3DSA:2.40.50.140 154 212 1.4E-28 T 11-10-2018 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 SUPERFAMILY SSF50104 24 87 1.3E-19 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 SMART SM00841 155 210 2.4E-33 T 11-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 APJL_0673 6ddc22ce59ceb27b5bdea65e7a65d2a7 212 PIRSF PIRSF005901 26 212 2.8E-64 T 11-10-2018 IPR020599 Translation elongation factor P/YeiP APJL_1892 263a36ef0e5e80792a6919a57f3434a1 254 Gene3D G3DSA:2.30.30.100 206 248 8.4E-19 T 11-10-2018 APJL_1892 263a36ef0e5e80792a6919a57f3434a1 254 Pfam PF03099 Biotin/lipoate A/B protein ligase family 22 145 1.5E-19 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 APJL_1892 263a36ef0e5e80792a6919a57f3434a1 254 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 20 251 2.4E-59 T 11-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APJL_1892 263a36ef0e5e80792a6919a57f3434a1 254 Pfam PF02237 Biotin protein ligase C terminal domain 209 252 1.1E-6 T 11-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APJL_1892 263a36ef0e5e80792a6919a57f3434a1 254 SUPERFAMILY SSF50037 206 252 1.24E-8 T 11-10-2018 IPR008988 Transcriptional repressor, C-terminal APJL_1892 263a36ef0e5e80792a6919a57f3434a1 254 SUPERFAMILY SSF55681 4 203 1.89E-55 T 11-10-2018 APJL_1892 263a36ef0e5e80792a6919a57f3434a1 254 Gene3D G3DSA:3.30.930.10 3 205 8.9E-61 T 11-10-2018 APJL_1645 adf23158d5bb64654bb4f89ae8a58f09 211 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 4 202 3.4E-120 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 APJL_1645 adf23158d5bb64654bb4f89ae8a58f09 211 Gene3D G3DSA:3.40.50.300 4 201 2.2E-51 T 11-10-2018 APJL_1645 adf23158d5bb64654bb4f89ae8a58f09 211 SUPERFAMILY SSF52540 2 197 1.73E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1645 adf23158d5bb64654bb4f89ae8a58f09 211 PIRSF PIRSF005624 1 210 1.6E-53 T 11-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 APJL_1645 adf23158d5bb64654bb4f89ae8a58f09 211 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 7 177 5.1E-39 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APJL_1645 adf23158d5bb64654bb4f89ae8a58f09 211 Hamap MF_01389 Urease accessory protein UreG [ureG]. 3 201 46.593 T 11-10-2018 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 758 6.7E-56 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Gene3D G3DSA:1.10.8.60 765 857 2.2E-26 T 11-10-2018 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 92 143 4.8E-12 T 11-10-2018 IPR004176 Clp, N-terminal APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 69 1.2E-11 T 11-10-2018 IPR004176 Clp, N-terminal APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Gene3D G3DSA:3.40.50.300 341 544 2.4E-67 T 11-10-2018 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 11-10-2018 IPR028299 ClpA/B, conserved site 2 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 SUPERFAMILY SSF52540 157 545 2.35E-98 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 201 332 9.8E-14 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 SMART SM01086 765 854 5.0E-39 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 SUPERFAMILY SSF52540 546 845 3.75E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Gene3D G3DSA:3.40.50.300 147 340 1.4E-75 T 11-10-2018 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Gene3D G3DSA:3.40.50.300 550 763 7.9E-89 T 11-10-2018 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 4.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 4.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 4.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 4.3E-42 T 11-10-2018 IPR001270 ClpA/B family GO:0005524 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 765 844 2.0E-25 T 11-10-2018 IPR019489 Clp ATPase, C-terminal APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 292 304 - T 11-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 SUPERFAMILY SSF81923 4 154 1.12E-41 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 854 0.0 T 11-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 Gene3D G3DSA:1.10.1780.10 1 146 6.0E-33 T 11-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 SMART SM00382 196 342 1.7E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1103 1db7dbe0f806061a362fe81478e3fd96 857 SMART SM00382 597 745 9.8E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 67 725 4.7E-260 T 11-10-2018 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 ProSitePatterns PS01175 Ribonuclease II family signature. 556 580 - T 11-10-2018 IPR022966 Ribonuclease II/R, conserved site APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 Gene3D G3DSA:2.40.50.140 646 783 1.5E-22 T 11-10-2018 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 Pfam PF08461 Ribonuclease R winged-helix domain 23 85 3.5E-8 T 11-10-2018 IPR013668 Ribonuclease R winged-helix domain APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 SMART SM00316 643 725 2.4E-10 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 Gene3D G3DSA:2.40.50.140 71 150 4.2E-17 T 11-10-2018 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 Pfam PF00575 S1 RNA binding domain 644 723 1.0E-13 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 Hamap MF_01895 Ribonuclease R [rnr]. 38 725 57.559 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 SMART SM00955 262 589 3.3E-182 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 SMART SM00357 86 147 4.0E-10 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 SUPERFAMILY SSF50249 142 237 1.87E-15 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 SUPERFAMILY SSF50249 645 724 3.37E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 TIGRFAM TIGR02063 RNase_R: ribonuclease R 19 725 9.0E-269 T 11-10-2018 IPR011805 Ribonuclease R GO:0003723|GO:0004518 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 SUPERFAMILY SSF50249 222 643 4.11E-142 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 Pfam PF00773 RNB domain 262 587 2.7E-107 T 11-10-2018 IPR001900 Ribonuclease II/R GO:0003723|GO:0004540 APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 SUPERFAMILY SSF50249 67 148 1.12E-17 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1503 30bd80c7b23461e5673bd1b085de2213 785 Pfam PF08206 Ribonuclease B OB domain 87 146 1.8E-22 T 11-10-2018 IPR013223 Ribonuclease B, N-terminal OB domain APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 SUPERFAMILY SSF47917 342 456 8.89E-54 T 11-10-2018 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 70 5.2E-20 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 457 56.672 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 330 339 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 SUPERFAMILY SSF52540 74 345 6.19E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 Gene3D G3DSA:2.40.10.170 1 72 5.3E-27 T 11-10-2018 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 SMART SM00382 139 324 0.0021 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 457 3.9E-258 T 11-10-2018 IPR005722 ATP synthase, F1 complex, beta subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201|Reactome: R-HSA-8949613 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 Gene3D G3DSA:3.40.50.300 73 341 2.4E-113 T 11-10-2018 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 127 339 4.3E-63 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 SUPERFAMILY SSF50615 1 72 2.46E-24 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1679 2727b6ec1ec7cc93b1445136fc7eaf2d 457 Gene3D G3DSA:1.10.1140.10 342 457 4.0E-58 T 11-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 Gene3D G3DSA:3.40.50.40 209 321 3.3E-25 T 11-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 81 91 - T 11-10-2018 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 PRINTS PR00139 Asparaginase/glutaminase family signature 5 16 2.6E-15 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 PRINTS PR00139 Asparaginase/glutaminase family signature 254 272 2.6E-15 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 PRINTS PR00139 Asparaginase/glutaminase family signature 80 98 2.6E-15 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 SUPERFAMILY SSF53774 3 314 3.27E-97 T 11-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 Pfam PF00710 Asparaginase, N-terminal 4 191 1.5E-58 T 11-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 7 15 - T 11-10-2018 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 SMART SM00870 4 319 3.0E-135 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 PIRSF PIRSF500176 1 320 2.6E-93 T 11-10-2018 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 PIRSF PIRSF001220 1 320 6.2E-93 T 11-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 APJL_0650 9a3febcaf1ccb171ec938ce2dbded7e4 321 Gene3D G3DSA:3.40.50.1170 2 208 7.0E-66 T 11-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Gene3D G3DSA:3.30.460.10 105 278 9.2E-63 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Gene3D G3DSA:1.20.120.330 827 959 1.1E-38 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Hamap MF_00802 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme [glnE]. 20 959 18.784 T 11-10-2018 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme GO:0008882 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 SUPERFAMILY SSF81593 281 447 9.42E-42 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 SUPERFAMILY SSF81301 540 830 1.44E-82 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Gene3D G3DSA:1.20.120.330 279 451 2.0E-48 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Gene3D G3DSA:1.10.4050.10 2 102 2.9E-19 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Gene3D G3DSA:3.30.460.100 577 826 4.9E-84 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 SUPERFAMILY SSF81301 16 280 1.53E-84 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Gene3D G3DSA:1.20.120.1510 463 576 9.8E-24 T 11-10-2018 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 25 269 1.2E-92 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 570 820 2.7E-89 T 11-10-2018 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Pfam PF08335 GlnD PII-uridylyltransferase 848 933 5.7E-7 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 Pfam PF08335 GlnD PII-uridylyltransferase 291 447 7.6E-45 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 APJL_0988 8c9526880fed68cd0a47d6c3106f0dce 959 SUPERFAMILY SSF81593 831 959 7.85E-33 T 11-10-2018 APJL_0411 c48b5e3496d358c9e35cc15cb6ec5cf2 312 Gene3D G3DSA:1.20.1530.20 1 308 3.3E-114 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APJL_0411 c48b5e3496d358c9e35cc15cb6ec5cf2 312 Pfam PF01758 Sodium Bile acid symporter family 43 220 2.1E-46 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 SUPERFAMILY SSF53335 140 431 6.23E-69 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 Pfam PF01029 NusB family 5 126 6.4E-25 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 Gene3D G3DSA:3.40.50.150 231 432 7.2E-67 T 11-10-2018 APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 Gene3D G3DSA:1.10.940.10 1 143 1.4E-43 T 11-10-2018 IPR035926 NusB-like superfamily APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 Gene3D G3DSA:3.30.70.1170 170 230 2.0E-7 T 11-10-2018 APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 SUPERFAMILY SSF48013 5 147 2.09E-36 T 11-10-2018 IPR035926 NusB-like superfamily APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 368 384 1.9E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 414 431 1.9E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 251 261 1.9E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 318 330 1.9E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 222 236 1.9E-29 T 11-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 Pfam PF01189 16S rRNA methyltransferase RsmB/F 240 429 2.3E-71 T 11-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 317 328 - T 11-10-2018 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 7 432 8.6E-157 T 11-10-2018 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 APJL_1588 0d568873bcd1955f5b67d8fd5ec37d78 432 Gene3D G3DSA:1.10.287.730 144 169 2.7E-8 T 11-10-2018 APJL_1082 883889771c2f5dc8f11a3241ce7d039a 98 SMART SM01323 5 89 3.2E-37 T 11-10-2018 IPR003849 Preprotein translocase YajC APJL_1082 883889771c2f5dc8f11a3241ce7d039a 98 PRINTS PR01853 Bacterial YajC preprotein translocase signature 45 63 1.0E-14 T 11-10-2018 IPR003849 Preprotein translocase YajC APJL_1082 883889771c2f5dc8f11a3241ce7d039a 98 PRINTS PR01853 Bacterial YajC preprotein translocase signature 7 27 1.0E-14 T 11-10-2018 IPR003849 Preprotein translocase YajC APJL_1082 883889771c2f5dc8f11a3241ce7d039a 98 Pfam PF02699 Preprotein translocase subunit 9 86 2.1E-25 T 11-10-2018 IPR003849 Preprotein translocase YajC APJL_1082 883889771c2f5dc8f11a3241ce7d039a 98 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 7 89 8.6E-32 T 11-10-2018 IPR003849 Preprotein translocase YajC APJL_0486 466f128fcd88954ef6ec41a281dbad45 512 SUPERFAMILY SSF64182 1 404 1.29E-110 T 11-10-2018 IPR038763 DHH phosphoesterase superfamily APJL_0486 466f128fcd88954ef6ec41a281dbad45 512 Pfam PF01368 DHH family 11 142 5.3E-8 T 11-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 APJL_0486 466f128fcd88954ef6ec41a281dbad45 512 Gene3D G3DSA:3.90.1640.30 1 260 4.6E-84 T 11-10-2018 APJL_0486 466f128fcd88954ef6ec41a281dbad45 512 Pfam PF02272 DHHA1 domain 256 390 1.4E-26 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 APJL_0486 466f128fcd88954ef6ec41a281dbad45 512 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 1 509 2.0E-146 T 11-10-2018 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 APJL_0486 466f128fcd88954ef6ec41a281dbad45 512 Gene3D G3DSA:3.10.310.30 262 394 4.6E-30 T 11-10-2018 APJL_0486 466f128fcd88954ef6ec41a281dbad45 512 Gene3D G3DSA:2.40.50.460 395 511 1.9E-8 T 11-10-2018 APJL_1403 88ca5f56dcec7adb82e274a4c054b7e2 344 Gene3D G3DSA:3.40.718.10 3 343 2.1E-106 T 11-10-2018 APJL_1403 88ca5f56dcec7adb82e274a4c054b7e2 344 PIRSF PIRSF002465 2 344 7.2E-114 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APJL_1403 88ca5f56dcec7adb82e274a4c054b7e2 344 SUPERFAMILY SSF53659 4 342 3.82E-95 T 11-10-2018 APJL_1403 88ca5f56dcec7adb82e274a4c054b7e2 344 Pfam PF02504 Fatty acid synthesis protein 5 329 5.9E-95 T 11-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 APJL_1403 88ca5f56dcec7adb82e274a4c054b7e2 344 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 341 1.3E-98 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APJL_1403 88ca5f56dcec7adb82e274a4c054b7e2 344 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 344 121.738 T 11-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 APJL_0340 161642d100df611377f4c8f3cc7554e4 325 Pfam PF03547 Membrane transport protein 170 313 5.3E-7 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APJL_0340 161642d100df611377f4c8f3cc7554e4 325 Pfam PF03547 Membrane transport protein 11 151 3.0E-9 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APJL_1933 034b449dbc14e0356d532a1f3d56b106 545 Gene3D G3DSA:3.40.50.300 63 191 2.1E-7 T 11-10-2018 APJL_1933 034b449dbc14e0356d532a1f3d56b106 545 Gene3D G3DSA:3.30.230.10 280 519 1.1E-84 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_1933 034b449dbc14e0356d532a1f3d56b106 545 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 304 320 7.3E-7 T 11-10-2018 APJL_1933 034b449dbc14e0356d532a1f3d56b106 545 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 417 436 7.3E-7 T 11-10-2018 APJL_1933 034b449dbc14e0356d532a1f3d56b106 545 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 387 406 7.3E-7 T 11-10-2018 APJL_1933 034b449dbc14e0356d532a1f3d56b106 545 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 390 496 6.6E-8 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 APJL_1933 034b449dbc14e0356d532a1f3d56b106 545 SUPERFAMILY SSF54211 302 496 2.66E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_1933 034b449dbc14e0356d532a1f3d56b106 545 Pfam PF13654 AAA domain 72 259 7.5E-13 T 11-10-2018 APJL_1328 7c565ec4a7f2666bc100d60413923a71 296 SUPERFAMILY SSF118352 228 285 3.66E-15 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 APJL_1328 7c565ec4a7f2666bc100d60413923a71 296 SUPERFAMILY SSF64397 7 235 3.92E-75 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 APJL_1328 7c565ec4a7f2666bc100d60413923a71 296 Gene3D G3DSA:3.90.1280.10 229 289 1.0E-15 T 11-10-2018 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 APJL_1328 7c565ec4a7f2666bc100d60413923a71 296 Gene3D G3DSA:1.10.287.480 181 228 1.1E-20 T 11-10-2018 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily APJL_1328 7c565ec4a7f2666bc100d60413923a71 296 Gene3D G3DSA:3.55.30.10 3 179 2.2E-61 T 11-10-2018 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 APJL_1328 7c565ec4a7f2666bc100d60413923a71 296 PIRSF PIRSF005261 1 289 1.4E-68 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APJL_1328 7c565ec4a7f2666bc100d60413923a71 296 Pfam PF01430 Hsp33 protein 8 277 7.1E-78 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APJL_1328 7c565ec4a7f2666bc100d60413923a71 296 Hamap MF_00117 33 kDa chaperonin [hslO]. 7 288 32.159 T 11-10-2018 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 SUPERFAMILY SSF53223 1 122 1.82E-40 T 11-10-2018 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 Gene3D G3DSA:3.40.50.720 6 258 6.0E-112 T 11-10-2018 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 SUPERFAMILY SSF51735 123 281 1.22E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 3.9E-42 T 11-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 259 267 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 11-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 5.9E-86 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 5.9E-86 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 5.9E-86 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 5.9E-86 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 5.9E-86 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 238 254 5.9E-86 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 5.9E-86 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 Gene3D G3DSA:3.40.50.10860 8 275 6.0E-112 T 11-10-2018 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 282 38.046 T 11-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0909 c9cd2fffcfb8d3c6ef144490c3923bec 285 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 280 1.0E-70 T 11-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 APJL_0887 b7436f8551694584aeb3cc5607c2ab91 62 Gene3D G3DSA:3.30.50.10 1 61 5.4E-24 T 11-10-2018 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 Reactome: R-HSA-383280 APJL_0887 b7436f8551694584aeb3cc5607c2ab91 62 SUPERFAMILY SSF57716 4 57 3.85E-21 T 11-10-2018 APJL_0887 b7436f8551694584aeb3cc5607c2ab91 62 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 2 59 17.935 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 APJL_0887 b7436f8551694584aeb3cc5607c2ab91 62 Pfam PF03884 DNA gyrase inhibitor YacG 6 51 4.9E-25 T 11-10-2018 IPR005584 DNA gyrase inhibitor YacG GO:0008270 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 2 89 2.0E-30 T 11-10-2018 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 168 175 - T 11-10-2018 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 SUPERFAMILY SSF54719 95 205 4.98E-46 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 SUPERFAMILY SSF46609 1 90 1.24E-34 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 PIRSF PIRSF000349 1 209 1.2E-78 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 201 2.9E-40 T 11-10-2018 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 PRINTS PR01703 Manganese superoxide dismutase signature 124 132 6.3E-26 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 6.3E-26 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 PRINTS PR01703 Manganese superoxide dismutase signature 166 178 6.3E-26 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 6.3E-26 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 PRINTS PR01703 Manganese superoxide dismutase signature 73 86 6.3E-26 T 11-10-2018 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 Gene3D G3DSA:2.40.500.20 94 212 3.9E-50 T 11-10-2018 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_0259 eb1d2c780d2e0c3a158bbddaa2cb1ad3 213 Gene3D G3DSA:1.10.287.990 20 90 3.4E-29 T 11-10-2018 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily MetaCyc: PWY-6854|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-8862803|Reactome: R-HSA-8950505 APJL_1614 353f1f5bc09a7bf86f85450f0772957b 380 Gene3D G3DSA:3.40.50.11820 132 145 1.1E-14 T 11-10-2018 APJL_1614 353f1f5bc09a7bf86f85450f0772957b 380 SUPERFAMILY SSF53756 3 331 9.1E-16 T 11-10-2018 APJL_1614 353f1f5bc09a7bf86f85450f0772957b 380 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 132 259 1.9E-10 T 11-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 APJL_1614 353f1f5bc09a7bf86f85450f0772957b 380 Gene3D G3DSA:3.40.50.12580 146 258 1.1E-14 T 11-10-2018 APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 6.3E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 6.3E-6 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 SUPERFAMILY SSF46785 6 65 3.44E-10 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 Pfam PF00455 DeoR C terminal sensor domain 73 227 1.1E-34 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 SMART SM01134 71 229 3.2E-36 T 11-10-2018 APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 SMART SM00420 6 58 6.7E-15 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 SUPERFAMILY SSF100950 72 231 2.41E-25 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 7.4E-16 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1734 c748eccf6f70f6eadc07a7531ef9aa13 248 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 APJL_2079 001ae610679fe39bdcfb1a7a4fdae42a 221 Hamap MF_02088 Probable queuosine precursor transporter. 10 218 15.924 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 APJL_2079 001ae610679fe39bdcfb1a7a4fdae42a 221 Pfam PF02592 Putative vitamin uptake transporter 52 208 7.3E-39 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 APJL_2079 001ae610679fe39bdcfb1a7a4fdae42a 221 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 15 213 1.1E-58 T 11-10-2018 IPR003744 Queuosine precursor transporter GO:1990397 APJL_1397 6c82a85ca4cf93488e7375e1296dc890 466 Gene3D G3DSA:1.10.760.10 181 327 2.5E-104 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APJL_1397 6c82a85ca4cf93488e7375e1296dc890 466 SUPERFAMILY SSF46626 164 315 2.96E-43 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APJL_1397 6c82a85ca4cf93488e7375e1296dc890 466 Pfam PF00034 Cytochrome c 335 451 8.4E-7 T 11-10-2018 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-111457|Reactome: R-HSA-111458|Reactome: R-HSA-111459|Reactome: R-HSA-2151201|Reactome: R-HSA-3299685|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APJL_1397 6c82a85ca4cf93488e7375e1296dc890 466 SMART SM01235 13 152 1.1E-56 T 11-10-2018 IPR025992 Haem-binding domain APJL_1397 6c82a85ca4cf93488e7375e1296dc890 466 SUPERFAMILY SSF46626 314 455 6.97E-36 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APJL_1397 6c82a85ca4cf93488e7375e1296dc890 466 Gene3D G3DSA:1.10.760.10 177 455 2.5E-104 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APJL_1397 6c82a85ca4cf93488e7375e1296dc890 466 Pfam PF14376 Haem-binding domain 16 149 2.4E-32 T 11-10-2018 IPR025992 Haem-binding domain APJL_1397 6c82a85ca4cf93488e7375e1296dc890 466 Pfam PF03150 Di-haem cytochrome c peroxidase 181 327 7.1E-47 T 11-10-2018 IPR004852 Di-haem cytochrome c peroxidase GO:0016491|GO:0055114 APJL_1135 179723a24c34b478054ddac83c170887 602 SUPERFAMILY SSF52540 203 451 1.12E-63 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1135 179723a24c34b478054ddac83c170887 602 Gene3D G3DSA:1.10.150.80 517 602 3.0E-27 T 11-10-2018 APJL_1135 179723a24c34b478054ddac83c170887 602 Pfam PF00271 Helicase conserved C-terminal domain 220 324 3.2E-20 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1135 179723a24c34b478054ddac83c170887 602 SMART SM00490 245 326 7.9E-28 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1135 179723a24c34b478054ddac83c170887 602 Pfam PF00570 HRDC domain 528 594 1.8E-21 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 APJL_1135 179723a24c34b478054ddac83c170887 602 SMART SM00487 17 213 1.9E-30 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_1135 179723a24c34b478054ddac83c170887 602 Pfam PF00270 DEAD/DEAH box helicase 24 180 8.2E-17 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APJL_1135 179723a24c34b478054ddac83c170887 602 SUPERFAMILY SSF47819 524 600 7.85E-26 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 APJL_1135 179723a24c34b478054ddac83c170887 602 Pfam PF09382 RQC domain 401 509 1.1E-37 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 APJL_1135 179723a24c34b478054ddac83c170887 602 Gene3D G3DSA:1.10.10.10 336 515 6.5E-50 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1135 179723a24c34b478054ddac83c170887 602 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 10 459 2.0E-194 T 11-10-2018 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 APJL_1135 179723a24c34b478054ddac83c170887 602 Gene3D G3DSA:3.40.50.300 1 203 2.5E-80 T 11-10-2018 APJL_1135 179723a24c34b478054ddac83c170887 602 SMART SM00341 524 602 2.4E-20 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 APJL_1135 179723a24c34b478054ddac83c170887 602 Pfam PF16124 RecQ zinc-binding 339 399 1.5E-14 T 11-10-2018 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain APJL_1135 179723a24c34b478054ddac83c170887 602 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 8 597 1.3E-251 T 11-10-2018 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 APJL_1135 179723a24c34b478054ddac83c170887 602 SUPERFAMILY SSF52540 9 195 2.33E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1135 179723a24c34b478054ddac83c170887 602 Gene3D G3DSA:3.40.50.300 204 335 5.4E-45 T 11-10-2018 APJL_1135 179723a24c34b478054ddac83c170887 602 SMART SM00956 406 509 1.7E-51 T 11-10-2018 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 49 521 3.7E-184 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 Pfam PF07687 Peptidase dimerisation domain 247 331 2.4E-10 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 121 140 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 200 218 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 246 263 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 291 310 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 142 160 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 403 421 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 490 512 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 176 193 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PRINTS PR00934 X-His dipeptidase (M25) signature 468 484 3.5E-83 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 PIRSF PIRSF016599 42 525 5.9E-202 T 11-10-2018 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 SUPERFAMILY SSF55031 245 344 5.06E-7 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 SUPERFAMILY SSF53187 53 521 1.72E-58 T 11-10-2018 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 Gene3D G3DSA:3.40.630.10 394 523 1.8E-23 T 11-10-2018 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 Gene3D G3DSA:3.40.630.10 41 283 1.9E-61 T 11-10-2018 APJL_0262 9e2cd540e3f0cb847a58509bae19d71b 525 Pfam PF01546 Peptidase family M20/M25/M40 113 520 1.9E-16 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APJL_2025 724f71fd247b1525c11b6d2886bf84c3 89 Pfam PF01206 Sulfurtransferase TusA 21 89 1.0E-18 T 11-10-2018 IPR001455 TusA-like domain APJL_2025 724f71fd247b1525c11b6d2886bf84c3 89 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 22 46 - T 11-10-2018 IPR001455 TusA-like domain APJL_2025 724f71fd247b1525c11b6d2886bf84c3 89 Gene3D G3DSA:3.30.110.40 17 89 2.8E-28 T 11-10-2018 IPR036868 TusA-like domain superfamily APJL_2025 724f71fd247b1525c11b6d2886bf84c3 89 SUPERFAMILY SSF64307 8 89 4.71E-24 T 11-10-2018 IPR036868 TusA-like domain superfamily APJL_1053 8cb95cc0efba117add3b2684f82c41dc 245 SUPERFAMILY SSF102114 22 219 2.55E-23 T 11-10-2018 APJL_1053 8cb95cc0efba117add3b2684f82c41dc 245 Pfam PF04055 Radical SAM superfamily 24 177 9.7E-29 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_1053 8cb95cc0efba117add3b2684f82c41dc 245 Gene3D G3DSA:3.20.20.70 2 245 4.3E-99 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1053 8cb95cc0efba117add3b2684f82c41dc 245 ProSitePatterns PS01087 Radical activating enzymes signature. 17 38 - T 11-10-2018 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 APJL_1053 8cb95cc0efba117add3b2684f82c41dc 245 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 238 8.4E-105 T 11-10-2018 IPR012838 Pyruvate formate-lyase 1 activating enzyme GO:0043365|GO:0055114 APJL_1053 8cb95cc0efba117add3b2684f82c41dc 245 Pfam PF13353 4Fe-4S single cluster domain 15 124 1.4E-18 T 11-10-2018 APJL_1053 8cb95cc0efba117add3b2684f82c41dc 245 PIRSF PIRSF000371 2 46 5.9E-11 T 11-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 APJL_1053 8cb95cc0efba117add3b2684f82c41dc 245 PIRSF PIRSF000371 45 244 4.2E-46 T 11-10-2018 IPR012839 Organic radical enzyme activase GO:0016491|GO:0055114 APJL_1860 7f7103dfcfbf965b66efae62ace14ec7 285 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 284 55.634 T 11-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 APJL_1860 7f7103dfcfbf965b66efae62ace14ec7 285 SUPERFAMILY SSF52096 13 280 3.7E-80 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_1860 7f7103dfcfbf965b66efae62ace14ec7 285 Pfam PF00378 Enoyl-CoA hydratase/isomerase 31 279 1.2E-79 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APJL_1860 7f7103dfcfbf965b66efae62ace14ec7 285 Gene3D G3DSA:3.90.226.10 1 222 2.9E-87 T 11-10-2018 APJL_1860 7f7103dfcfbf965b66efae62ace14ec7 285 Gene3D G3DSA:1.10.12.10 223 273 1.0E-30 T 11-10-2018 IPR014748 Enoyl-CoA hydratase, C-terminal APJL_1860 7f7103dfcfbf965b66efae62ace14ec7 285 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 123 143 - T 11-10-2018 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824 APJL_1860 7f7103dfcfbf965b66efae62ace14ec7 285 TIGRFAM TIGR01929 menB: naphthoate synthase 22 281 1.2E-146 T 11-10-2018 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 APJL_1849 d65c7f4492c60ee355608fe94e4dfdb6 646 Pfam PF02687 FtsX-like permease family 551 639 5.6E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APJL_1849 d65c7f4492c60ee355608fe94e4dfdb6 646 Gene3D G3DSA:3.40.50.300 3 261 1.4E-67 T 11-10-2018 APJL_1849 d65c7f4492c60ee355608fe94e4dfdb6 646 Pfam PF00005 ABC transporter 25 173 7.4E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1849 d65c7f4492c60ee355608fe94e4dfdb6 646 Pfam PF12704 MacB-like periplasmic core domain 272 488 3.2E-34 T 11-10-2018 IPR025857 MacB-like periplasmic core domain APJL_1849 d65c7f4492c60ee355608fe94e4dfdb6 646 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1849 d65c7f4492c60ee355608fe94e4dfdb6 646 SMART SM00382 34 228 1.5E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1849 d65c7f4492c60ee355608fe94e4dfdb6 646 SUPERFAMILY SSF52540 5 227 1.18E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 Pfam PF01165 Ribosomal protein S21 4 56 1.4E-18 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 3.3E-24 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 19.132 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 5.3E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 5.3E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 5.3E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 5.3E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 56 2.0E-16 T 11-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 Gene3D G3DSA:1.20.5.1150 16 54 1.1E-18 T 11-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1498 8f5fb3ab97d28dcee0a8cc65f93e7520 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 11-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 PIRSF PIRSF000497 1 381 9.6E-174 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 SUPERFAMILY SSF55973 233 379 3.77E-72 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 101 1.1E-41 T 11-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 259 267 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 SUPERFAMILY SSF55973 5 109 5.49E-46 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 SUPERFAMILY SSF55973 112 232 6.67E-51 T 11-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 116 126 - T 11-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 Pfam PF02772 S-adenosylmethionine synthetase, central domain 114 231 9.3E-45 T 11-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 5 378 4.3E-199 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 2 381 59.028 T 11-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 Gene3D G3DSA:3.30.300.10 5 233 1.3E-177 T 11-10-2018 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 Gene3D G3DSA:3.30.300.10 103 372 1.3E-177 T 11-10-2018 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 Gene3D G3DSA:3.30.300.10 11 270 1.3E-177 T 11-10-2018 APJL_1096 59276f2e5d26d8257f2c2f4ae2ccb843 383 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 233 370 4.2E-70 T 11-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 APJL_1372 9285ef79d2f187c611883dec59adac2f 244 SMART SM00382 27 218 2.1E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1372 9285ef79d2f187c611883dec59adac2f 244 Pfam PF00005 ABC transporter 20 170 1.9E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1372 9285ef79d2f187c611883dec59adac2f 244 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1372 9285ef79d2f187c611883dec59adac2f 244 SUPERFAMILY SSF52540 3 232 2.54E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1372 9285ef79d2f187c611883dec59adac2f 244 Gene3D G3DSA:3.40.50.300 1 243 1.6E-70 T 11-10-2018 APJL_1372 9285ef79d2f187c611883dec59adac2f 244 PIRSF PIRSF039085 1 244 2.4E-85 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 Gene3D G3DSA:3.40.120.10 2 148 8.9E-52 T 11-10-2018 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 6.6E-29 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 207 220 6.6E-29 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 91 105 6.6E-29 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 168 187 6.6E-29 T 11-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 92 101 - T 11-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 SUPERFAMILY SSF53738 151 259 2.12E-26 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 450 4.5E-12 T 11-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 152 256 1.9E-22 T 11-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 133 4.9E-34 T 11-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 SUPERFAMILY SSF53738 3 174 6.67E-40 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 Gene3D G3DSA:3.30.310.50 372 452 3.5E-27 T 11-10-2018 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 Gene3D G3DSA:3.40.120.10 170 252 1.7E-26 T 11-10-2018 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 261 370 7.8E-23 T 11-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 SUPERFAMILY SSF55957 371 452 1.92E-18 T 11-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 Gene3D G3DSA:3.40.120.10 253 370 3.7E-34 T 11-10-2018 APJL_0642 46d64aba2780979b79122b5b2fb0c4b2 452 SUPERFAMILY SSF53738 261 365 4.71E-31 T 11-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 457 1.3E-46 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 Pfam PF04073 Aminoacyl-tRNA editing domain 256 374 8.3E-25 T 11-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 Gene3D G3DSA:3.30.930.10 11 463 8.8E-240 T 11-10-2018 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 Gene3D G3DSA:3.90.960.10 240 387 8.8E-240 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 567 1.3E-277 T 11-10-2018 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 SUPERFAMILY SSF52954 462 569 1.96E-30 T 11-10-2018 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 SUPERFAMILY SSF55681 10 477 1.13E-102 T 11-10-2018 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 4.0E-19 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 4.0E-19 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 4.0E-19 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 4.0E-19 T 11-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 570 42.153 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 PIRSF PIRSF001535 1 571 1.6E-268 T 11-10-2018 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 Gene3D G3DSA:3.40.50.800 4 553 8.8E-240 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily APJL_1867 03358456513c53c388a0f498cde1e1dc 571 SUPERFAMILY SSF55826 218 388 9.81E-30 T 11-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 APJL_1867 03358456513c53c388a0f498cde1e1dc 571 Pfam PF03129 Anticodon binding domain 475 568 3.1E-22 T 11-10-2018 IPR004154 Anticodon-binding APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 PRINTS PR00721 Stomatin signature 95 117 4.5E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 PRINTS PR00721 Stomatin signature 142 163 4.5E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 PRINTS PR00721 Stomatin signature 177 194 4.5E-7 T 11-10-2018 IPR001972 Stomatin family GO:0016020 APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 Gene3D G3DSA:3.30.479.30 117 250 6.9E-20 T 11-10-2018 APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 Pfam PF12221 Bacterial membrane protein N terminal 1 61 2.0E-10 T 11-10-2018 IPR020980 Menbrane protein HflK, N-terminal APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 SMART SM00244 88 248 5.5E-49 T 11-10-2018 IPR001107 Band 7 domain APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 SUPERFAMILY SSF117892 121 253 2.22E-23 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 Pfam PF01145 SPFH domain / Band 7 family 92 263 5.1E-32 T 11-10-2018 IPR001107 Band 7 domain APJL_1093 9ea2e9dea42d62dfb2be190b75c9cf47 396 TIGRFAM TIGR01933 hflK: HflK protein 90 348 9.0E-118 T 11-10-2018 IPR010201 HflK GO:0016021 APJL_0091 b00308c2071a27a0d7734da7588e0115 460 Pfam PF00557 Metallopeptidase family M24 181 440 8.4E-37 T 11-10-2018 IPR000994 Peptidase M24 APJL_0091 b00308c2071a27a0d7734da7588e0115 460 Hamap MF_01279 Xaa-Pro dipeptidase [pepQ]. 15 454 53.357 T 11-10-2018 IPR022846 Xaa-Pro dipeptidase GO:0016795 APJL_0091 b00308c2071a27a0d7734da7588e0115 460 Gene3D G3DSA:3.90.230.10 172 457 2.6E-69 T 11-10-2018 APJL_0091 b00308c2071a27a0d7734da7588e0115 460 Gene3D G3DSA:3.40.350.10 17 171 2.3E-48 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APJL_0091 b00308c2071a27a0d7734da7588e0115 460 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 346 358 - T 11-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site APJL_0091 b00308c2071a27a0d7734da7588e0115 460 SUPERFAMILY SSF55920 175 456 9.68E-51 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 Pfam PF00701 Dihydrodipicolinate synthetase family 4 289 2.5E-105 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 41 58 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 136 166 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 SUPERFAMILY SSF51569 1 287 1.36E-76 T 11-10-2018 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 Gene3D G3DSA:3.20.20.70 1 292 1.8E-102 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 TIGRFAM TIGR00683 nanA: N-acetylneuraminate lyase 4 292 4.5E-152 T 11-10-2018 IPR005264 N-acetylneuraminate lyase GO:0005737|GO:0005975|GO:0008747 KEGG: 00520+4.1.3.3|MetaCyc: PWY-7581|Reactome: R-HSA-4085001 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 PIRSF PIRSF001365 1 291 5.2E-64 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 Hamap MF_01237 N-acetylneuraminate lyase [nanA]. 4 292 50.384 T 11-10-2018 IPR005264 N-acetylneuraminate lyase GO:0005737|GO:0005975|GO:0008747 KEGG: 00520+4.1.3.3|MetaCyc: PWY-7581|Reactome: R-HSA-4085001 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 1.2E-19 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 1.2E-19 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 1.2E-19 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 1.2E-19 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_1789 be6bf9e1f6bc59dfc7d8a720325cd703 292 SMART SM01130 3 291 5.1E-75 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_1145 97968eb146840738ac4734d665517b9a 232 SUPERFAMILY SSF50199 24 150 3.92E-34 T 11-10-2018 APJL_1145 97968eb146840738ac4734d665517b9a 232 SMART SM00318 26 145 3.2E-29 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 APJL_1145 97968eb146840738ac4734d665517b9a 232 ProSitePatterns PS01284 Thermonuclease family signature 2. 91 101 - T 11-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 APJL_1145 97968eb146840738ac4734d665517b9a 232 Gene3D G3DSA:2.40.50.90 22 149 8.9E-30 T 11-10-2018 IPR035437 SNase-like, OB-fold superfamily APJL_1145 97968eb146840738ac4734d665517b9a 232 Pfam PF00565 Staphylococcal nuclease homologue 51 145 1.4E-22 T 11-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 APJL_1145 97968eb146840738ac4734d665517b9a 232 ProSitePatterns PS01123 Thermonuclease family signature 1. 37 61 - T 11-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 APJL_0849 973769ddde6df74e9374d3a56f7f44b9 482 Gene3D G3DSA:3.40.50.1220 304 482 3.2E-89 T 11-10-2018 APJL_0849 973769ddde6df74e9374d3a56f7f44b9 482 PIRSF PIRSF000204 1 482 1.5E-231 T 11-10-2018 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 APJL_0849 973769ddde6df74e9374d3a56f7f44b9 482 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 478 4.6E-198 T 11-10-2018 IPR034300 NADP transhydrogenase beta-like domain KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APJL_0849 973769ddde6df74e9374d3a56f7f44b9 482 SUPERFAMILY SSF52467 307 481 1.03E-79 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APJL_0619 5d7bcbd82b584c84aa06d62de903deab 332 Gene3D G3DSA:3.40.190.90 112 279 1.0E-124 T 11-10-2018 APJL_0619 5d7bcbd82b584c84aa06d62de903deab 332 Gene3D G3DSA:3.30.540.10 7 322 1.0E-124 T 11-10-2018 APJL_0619 5d7bcbd82b584c84aa06d62de903deab 332 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 327 1.7E-157 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 APJL_0619 5d7bcbd82b584c84aa06d62de903deab 332 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 4 324 3.7E-129 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 APJL_0619 5d7bcbd82b584c84aa06d62de903deab 332 PIRSF PIRSF004532 1 332 4.0E-130 T 11-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 APJL_0619 5d7bcbd82b584c84aa06d62de903deab 332 SUPERFAMILY SSF56655 2 327 1.67E-105 T 11-10-2018 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 SUPERFAMILY SSF52402 6 188 2.96E-32 T 11-10-2018 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 Gene3D G3DSA:3.40.50.620 15 192 2.2E-117 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0447 3e7af487ad516cecf775aed8d4416728 443 SUPERFAMILY SSF69864 191 434 2.35E-79 T 11-10-2018 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 Hamap MF_00581 Argininosuccinate synthase [argG]. 2 441 68.767 T 11-10-2018 IPR023437 Argininosuccinate synthase, type 2 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 Pfam PF00764 Arginosuccinate synthase 17 395 1.9E-60 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 Gene3D G3DSA:1.10.287.400 378 441 5.2E-30 T 11-10-2018 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail GO:0042803 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 130 141 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 TIGRFAM TIGR00032 argG: argininosuccinate synthase 14 420 2.3E-166 T 11-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 Gene3D G3DSA:3.90.1260.10 75 368 2.2E-117 T 11-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APJL_0447 3e7af487ad516cecf775aed8d4416728 443 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 18 26 - T 11-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 APJL_1287 09c95744259047d54bb2ff3cac136b5e 83 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 3 55 1.7E-10 T 11-10-2018 APJL_1287 09c95744259047d54bb2ff3cac136b5e 83 Gene3D G3DSA:1.10.1220.170 41 83 1.9E-14 T 11-10-2018 APJL_1287 09c95744259047d54bb2ff3cac136b5e 83 SUPERFAMILY SSF143120 1 81 5.76E-24 T 11-10-2018 IPR036165 YefM-like superfamily APJL_1287 09c95744259047d54bb2ff3cac136b5e 83 Gene3D G3DSA:3.40.1620.10 1 40 5.8E-20 T 11-10-2018 APJL_1287 09c95744259047d54bb2ff3cac136b5e 83 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 73 1.1E-18 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APJL_0884 2211ba5861970365fa68140392920fc2 861 SUPERFAMILY SSF52374 4 668 3.76E-145 T 11-10-2018 APJL_0884 2211ba5861970365fa68140392920fc2 861 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0884 2211ba5861970365fa68140392920fc2 861 Gene3D G3DSA:3.40.50.620 33 566 0.0 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0884 2211ba5861970365fa68140392920fc2 861 SUPERFAMILY SSF50677 226 415 4.29E-56 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APJL_0884 2211ba5861970365fa68140392920fc2 861 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 171 4.5E-28 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0884 2211ba5861970365fa68140392920fc2 861 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 417 572 2.1E-8 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0884 2211ba5861970365fa68140392920fc2 861 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 652 1.5E-7 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0884 2211ba5861970365fa68140392920fc2 861 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 404 1.7E-78 T 11-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 APJL_0884 2211ba5861970365fa68140392920fc2 861 Gene3D G3DSA:3.10.330.110 567 628 0.0 T 11-10-2018 APJL_0884 2211ba5861970365fa68140392920fc2 861 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 859 23.027 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 859 0.0 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 SUPERFAMILY SSF47323 662 859 3.74E-35 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0884 2211ba5861970365fa68140392920fc2 861 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 1.2E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.2E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 PRINTS PR00985 Leucyl-tRNA synthetase signature 524 546 1.2E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.2E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 PRINTS PR00985 Leucyl-tRNA synthetase signature 557 567 1.2E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.2E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.2E-51 T 11-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 APJL_0884 2211ba5861970365fa68140392920fc2 861 Gene3D G3DSA:3.90.740.10 227 414 0.0 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APJL_0884 2211ba5861970365fa68140392920fc2 861 Pfam PF08264 Anticodon-binding domain of tRNA 699 823 5.6E-18 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 APJL_0884 2211ba5861970365fa68140392920fc2 861 Gene3D G3DSA:1.10.730.10 9 789 0.0 T 11-10-2018 APJL_0884 2211ba5861970365fa68140392920fc2 861 Gene3D G3DSA:3.10.20.590 799 859 5.9E-20 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 7 460 1.3E-150 T 11-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 Gene3D G3DSA:3.30.390.30 346 467 1.3E-43 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 1.0E-33 T 11-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 11-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 2.7E-41 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 2.7E-41 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 2.7E-41 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.7E-41 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 2.7E-41 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 SUPERFAMILY SSF51905 7 381 2.72E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 8.8E-69 T 11-10-2018 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 Gene3D G3DSA:3.50.50.60 9 332 1.3E-120 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0774 207e84149d75c7b1aefb6170124cf387 474 Gene3D G3DSA:3.50.50.60 151 271 1.3E-120 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0774 207e84149d75c7b1aefb6170124cf387 474 PIRSF PIRSF000350 1 469 1.9E-86 T 11-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 SUPERFAMILY SSF55424 343 466 4.81E-38 T 11-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 APJL_0774 207e84149d75c7b1aefb6170124cf387 474 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 6.9E-64 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APJL_0349 7e9d196f5e2348a81352a66515fcb4ba 381 Pfam PF01494 FAD binding domain 2 310 3.4E-23 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APJL_0349 7e9d196f5e2348a81352a66515fcb4ba 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 301 4.7E-11 T 11-10-2018 APJL_0349 7e9d196f5e2348a81352a66515fcb4ba 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 270 285 4.7E-11 T 11-10-2018 APJL_0349 7e9d196f5e2348a81352a66515fcb4ba 381 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 4.7E-11 T 11-10-2018 APJL_0349 7e9d196f5e2348a81352a66515fcb4ba 381 Gene3D G3DSA:3.30.9.50 65 259 7.0E-103 T 11-10-2018 APJL_0349 7e9d196f5e2348a81352a66515fcb4ba 381 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 1 380 8.7E-119 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 APJL_0349 7e9d196f5e2348a81352a66515fcb4ba 381 Gene3D G3DSA:3.50.50.60 1 328 7.0E-103 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0349 7e9d196f5e2348a81352a66515fcb4ba 381 SUPERFAMILY SSF51905 1 374 3.77E-46 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1366 6c2e305d7164cb66bb3c4e4efecb4a95 103 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 3 103 5.0E-48 T 11-10-2018 IPR007376 dsDNA mimic, putative APJL_1366 6c2e305d7164cb66bb3c4e4efecb4a95 103 Hamap MF_00680 UPF0263 protein YciU [yciU]. 1 103 30.341 T 11-10-2018 IPR007376 dsDNA mimic, putative APJL_1366 6c2e305d7164cb66bb3c4e4efecb4a95 103 SUPERFAMILY SSF102816 1 103 8.24E-52 T 11-10-2018 IPR036763 Putative dsDNA mimic superfamily APJL_1366 6c2e305d7164cb66bb3c4e4efecb4a95 103 PIRSF PIRSF004916 1 103 7.5E-50 T 11-10-2018 IPR007376 dsDNA mimic, putative APJL_1366 6c2e305d7164cb66bb3c4e4efecb4a95 103 Pfam PF04269 Protein of unknown function, DUF440 4 103 4.0E-46 T 11-10-2018 IPR007376 dsDNA mimic, putative APJL_1366 6c2e305d7164cb66bb3c4e4efecb4a95 103 Gene3D G3DSA:3.10.450.140 4 103 1.1E-40 T 11-10-2018 IPR036763 Putative dsDNA mimic superfamily APJL_0225 e798522e4169d453c8a367f7b689e3da 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 17.567 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APJL_0225 e798522e4169d453c8a367f7b689e3da 65 Pfam PF01632 Ribosomal protein L35 2 59 1.3E-22 T 11-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0225 e798522e4169d453c8a367f7b689e3da 65 SUPERFAMILY SSF143034 2 64 2.35E-22 T 11-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0225 e798522e4169d453c8a367f7b689e3da 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 9.0E-22 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APJL_0225 e798522e4169d453c8a367f7b689e3da 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 9.0E-22 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APJL_0225 e798522e4169d453c8a367f7b689e3da 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 9.0E-22 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APJL_0225 e798522e4169d453c8a367f7b689e3da 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 11-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0225 e798522e4169d453c8a367f7b689e3da 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 1.5E-23 T 11-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 APJL_0225 e798522e4169d453c8a367f7b689e3da 65 Gene3D G3DSA:2.40.50.530 1 65 1.1E-19 T 11-10-2018 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 SUPERFAMILY SSF50494 39 267 7.31E-64 T 11-10-2018 IPR009003 Peptidase S1, PA clan APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 Gene3D G3DSA:2.30.42.10 377 464 4.2E-24 T 11-10-2018 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 Gene3D G3DSA:2.30.42.10 273 376 2.0E-30 T 11-10-2018 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 SUPERFAMILY SSF50156 233 358 5.13E-25 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 Pfam PF13365 Trypsin-like peptidase domain 99 236 1.3E-29 T 11-10-2018 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 Gene3D G3DSA:2.40.10.120 39 269 4.8E-83 T 11-10-2018 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 Pfam PF13180 PDZ domain 286 366 8.4E-17 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 SUPERFAMILY SSF50156 392 460 1.14E-14 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 SMART SM00228 275 357 4.2E-16 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 SMART SM00228 384 456 5.0E-11 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 41 462 5.9E-157 T 11-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 394 453 5.4E-10 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 PRINTS PR00834 HtrA/DegQ protease family signature 130 150 1.4E-59 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 PRINTS PR00834 HtrA/DegQ protease family signature 207 224 1.4E-59 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 PRINTS PR00834 HtrA/DegQ protease family signature 109 121 1.4E-59 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 PRINTS PR00834 HtrA/DegQ protease family signature 171 195 1.4E-59 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 PRINTS PR00834 HtrA/DegQ protease family signature 229 246 1.4E-59 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_1306 bc8b1495ca5df44d1d01a807bedc5523 464 PRINTS PR00834 HtrA/DegQ protease family signature 315 327 1.4E-59 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_0668 7c4d74e04a3c2e436f656569b15aff55 514 Pfam PF08411 Exonuclease C-terminal 208 469 8.2E-102 T 11-10-2018 IPR013620 Exodeoxyribonuclease I, C-terminal GO:0006281|GO:0008852 APJL_0668 7c4d74e04a3c2e436f656569b15aff55 514 Gene3D G3DSA:1.20.1280.70 357 418 3.2E-24 T 11-10-2018 APJL_0668 7c4d74e04a3c2e436f656569b15aff55 514 SUPERFAMILY SSF53098 6 471 9.66E-133 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0668 7c4d74e04a3c2e436f656569b15aff55 514 Gene3D G3DSA:3.30.420.10 1 197 2.2E-72 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0668 7c4d74e04a3c2e436f656569b15aff55 514 Pfam PF00929 Exonuclease 9 188 5.6E-28 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APJL_0668 7c4d74e04a3c2e436f656569b15aff55 514 Gene3D G3DSA:2.30.30.450 210 351 8.3E-54 T 11-10-2018 IPR038649 Exonuclease I, SH3-like domain superfamily APJL_0668 7c4d74e04a3c2e436f656569b15aff55 514 PIRSF PIRSF000977 1 476 5.1E-202 T 11-10-2018 IPR023607 Exodeoxyribonuclease I GO:0004529 APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 Pfam PF00381 PTS HPr component phosphorylation site 3 81 1.6E-26 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 Gene3D G3DSA:3.30.1340.10 1 85 1.7E-32 T 11-10-2018 IPR035895 HPr-like superfamily APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 3.0E-19 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 3.0E-19 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 3.0E-19 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 SUPERFAMILY SSF55594 1 81 3.27E-26 T 11-10-2018 IPR035895 HPr-like superfamily APJL_1336 a9def898a0dffbe89048e7caf6b2416b 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 4.6E-27 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 72 3.0E-14 T 11-10-2018 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 31.01 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 Gene3D G3DSA:1.10.720.90 2 55 2.3E-24 T 11-10-2018 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 SUPERFAMILY SSF74731 3 116 4.19E-50 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.1E-52 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 Pfam PF00453 Ribosomal protein L20 3 109 1.0E-48 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 PRINTS PR00062 Ribosomal protein L20 signature 75 101 1.2E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 PRINTS PR00062 Ribosomal protein L20 signature 12 41 1.2E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 PRINTS PR00062 Ribosomal protein L20 signature 42 71 1.2E-42 T 11-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0226 5f96a4a191b55abae99992e41d1856bb 117 Gene3D G3DSA:1.10.1900.20 56 117 6.7E-29 T 11-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 Gene3D G3DSA:3.90.870.50 11 366 3.1E-145 T 11-10-2018 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 PIRSF PIRSF006256 4 767 3.4E-275 T 11-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 11 760 6.6E-263 T 11-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 Gene3D G3DSA:3.30.420.360 387 761 2.1E-119 T 11-10-2018 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 Gene3D G3DSA:3.30.420.350 491 749 2.1E-119 T 11-10-2018 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 Pfam PF01300 Telomere recombination 217 388 7.3E-51 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 SUPERFAMILY SSF53067 690 763 1.56E-5 T 11-10-2018 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 SUPERFAMILY SSF54975 7 98 7.41E-20 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 ProSitePatterns PS00150 Acylphosphatase signature 1. 13 23 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 SUPERFAMILY SSF55821 182 393 7.94E-48 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 Pfam PF07503 HypF finger 166 195 9.7E-14 T 11-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 Pfam PF07503 HypF finger 115 148 6.6E-17 T 11-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 Pfam PF00708 Acylphosphatase 10 87 1.9E-18 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APJL_1348 1b73f4a93e846ab916f736f4283cf1cb 767 Gene3D G3DSA:3.30.110.120 260 375 3.1E-145 T 11-10-2018 APJL_0768 97fce98fc0be4da425c420895940a778 764 SUPERFAMILY SSF56281 504 755 2.38E-41 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APJL_0768 97fce98fc0be4da425c420895940a778 764 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 64 732 3.6E-160 T 11-10-2018 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 APJL_0768 97fce98fc0be4da425c420895940a778 764 Pfam PF03772 Competence protein 192 469 2.6E-57 T 11-10-2018 IPR004477 ComEC/Rec2-related protein APJL_0768 97fce98fc0be4da425c420895940a778 764 Pfam PF13567 Domain of unknown function (DUF4131) 19 160 2.4E-7 T 11-10-2018 IPR025405 Domain of unknown function DUF4131 APJL_0768 97fce98fc0be4da425c420895940a778 764 Gene3D G3DSA:3.60.15.10 506 748 1.2E-44 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APJL_0768 97fce98fc0be4da425c420895940a778 764 Pfam PF00753 Metallo-beta-lactamase superfamily 525 701 6.1E-8 T 11-10-2018 IPR001279 Metallo-beta-lactamase APJL_0768 97fce98fc0be4da425c420895940a778 764 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 213 410 4.3E-34 T 11-10-2018 IPR004477 ComEC/Rec2-related protein APJL_0376 711aa013689a0f731b90b3f74749ea87 198 Pfam PF00877 NlpC/P60 family 95 196 1.6E-28 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain APJL_0376 711aa013689a0f731b90b3f74749ea87 198 SUPERFAMILY SSF54001 81 197 2.28E-36 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APJL_0376 711aa013689a0f731b90b3f74749ea87 198 Gene3D G3DSA:3.90.1720.10 80 198 3.8E-39 T 11-10-2018 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 Pfam PF01926 50S ribosome-binding GTPase 5 122 2.5E-22 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 6.7E-40 T 11-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 SUPERFAMILY SSF81271 279 360 1.44E-36 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 46.489 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 2.6E-178 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 Gene3D G3DSA:3.10.20.30 48 362 6.2E-156 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 Gene3D G3DSA:3.40.50.300 4 278 6.2E-156 T 11-10-2018 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 SUPERFAMILY SSF52540 3 301 1.5E-87 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 Gene3D G3DSA:1.10.150.300 120 200 6.2E-156 T 11-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 4.1E-35 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 4.1E-35 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 4.1E-35 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 4.1E-35 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0035 1bc21308b2ce3be6e1ef5572489dde8b 363 PIRSF PIRSF006641 1 363 3.3E-161 T 11-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 TIGRFAM TIGR02166 dmsA_ynfE: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family 3 804 0.0 T 11-10-2018 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE GO:0009389|GO:0030151|GO:0051539|GO:0055114 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 Gene3D G3DSA:3.40.228.10 337 411 1.2E-17 T 11-10-2018 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 SMART SM00926 46 106 8.1E-12 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 SUPERFAMILY SSF53706 47 688 4.06E-175 T 11-10-2018 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 33 1.5E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 46 106 3.0E-17 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 SUPERFAMILY SSF50692 632 804 2.71E-39 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 Pfam PF00384 Molybdopterin oxidoreductase 109 567 4.8E-109 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 Gene3D G3DSA:2.40.40.20 661 805 1.6E-42 T 11-10-2018 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 Pfam PF01568 Molydopterin dinucleotide binding domain 686 797 2.9E-27 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 722 749 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 Gene3D G3DSA:3.40.50.740 40 322 1.1E-86 T 11-10-2018 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 51 70 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 APJL_1705 1ecf84e559be6a0d6e85cdafe9a4141a 805 Gene3D G3DSA:3.40.50.740 413 616 1.9E-50 T 11-10-2018 APJL_0087 53024f793599c1495ea9ad0e31626dba 256 Gene3D G3DSA:3.90.79.10 125 256 3.9E-36 T 11-10-2018 APJL_0087 53024f793599c1495ea9ad0e31626dba 256 Pfam PF00293 NUDIX domain 130 230 3.7E-16 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APJL_0087 53024f793599c1495ea9ad0e31626dba 256 SUPERFAMILY SSF55811 77 245 3.38E-37 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_0087 53024f793599c1495ea9ad0e31626dba 256 SUPERFAMILY SSF55811 2 95 9.12E-21 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_0087 53024f793599c1495ea9ad0e31626dba 256 ProSitePatterns PS00893 Nudix box signature. 158 179 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APJL_0087 53024f793599c1495ea9ad0e31626dba 256 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 92 123 5.0E-11 T 11-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 APJL_0087 53024f793599c1495ea9ad0e31626dba 256 Gene3D G3DSA:3.90.79.20 1 124 4.6E-34 T 11-10-2018 APJL_1375 129ee0aed1ec5cd77c413061ce3fa60d 97 SUPERFAMILY SSF47413 20 90 4.5E-13 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_1375 129ee0aed1ec5cd77c413061ce3fa60d 97 SMART SM00530 33 88 9.9E-11 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_1375 129ee0aed1ec5cd77c413061ce3fa60d 97 Pfam PF01381 Helix-turn-helix 35 86 6.7E-13 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_1375 129ee0aed1ec5cd77c413061ce3fa60d 97 Gene3D G3DSA:1.10.260.40 12 89 7.1E-12 T 11-10-2018 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 Pfam PF00717 Peptidase S24-like 110 185 9.8E-19 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 Pfam PF10502 Signal peptidase, peptidase S26 254 295 2.3E-6 T 11-10-2018 IPR019533 Peptidase S26 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 Gene3D G3DSA:2.170.230.10 179 257 4.6E-74 T 11-10-2018 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 ProSitePatterns PS00761 Signal peptidases I signature 3. 263 276 - T 11-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 ProSitePatterns PS00760 Signal peptidases I lysine active site. 170 182 - T 11-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 ProSitePatterns PS00501 Signal peptidases I serine active site. 113 120 - T 11-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 104 120 7.1E-26 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 258 277 7.1E-26 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 168 180 7.1E-26 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 89 298 5.6E-47 T 11-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 SUPERFAMILY SSF51306 102 317 1.39E-72 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily APJL_0535 cde752ad63cc043200b22ebd0fa295e3 319 Gene3D G3DSA:2.10.109.10 102 297 4.6E-74 T 11-10-2018 APJL_1492 ed9d9172767b055b674f335a161fa8c3 365 Gene3D G3DSA:3.40.50.720 136 258 6.1E-22 T 11-10-2018 APJL_1492 ed9d9172767b055b674f335a161fa8c3 365 Gene3D G3DSA:3.40.50.720 2 135 8.7E-36 T 11-10-2018 APJL_1492 ed9d9172767b055b674f335a161fa8c3 365 SUPERFAMILY SSF54373 246 314 6.87E-25 T 11-10-2018 APJL_1492 ed9d9172767b055b674f335a161fa8c3 365 SUPERFAMILY SSF51971 1 361 5.89E-52 T 11-10-2018 APJL_1492 ed9d9172767b055b674f335a161fa8c3 365 Pfam PF03275 UDP-galactopyranose mutase 147 347 2.9E-84 T 11-10-2018 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 APJL_1492 ed9d9172767b055b674f335a161fa8c3 365 Pfam PF13450 NAD(P)-binding Rossmann-like domain 7 73 5.2E-20 T 11-10-2018 APJL_1492 ed9d9172767b055b674f335a161fa8c3 365 Gene3D G3DSA:3.40.50.720 259 365 4.3E-17 T 11-10-2018 APJL_1492 ed9d9172767b055b674f335a161fa8c3 365 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 2 362 1.2E-132 T 11-10-2018 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 Gene3D G3DSA:2.60.300.12 7 105 1.5E-15 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 126 188 4.0E-28 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 8 199 45.046 T 11-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 SUPERFAMILY SSF89360 8 104 2.55E-24 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 9 199 4.4E-97 T 11-10-2018 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 SUPERFAMILY SSF117916 102 192 1.4E-22 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 Pfam PF01106 NifU-like domain 120 181 3.7E-19 T 11-10-2018 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 Pfam PF01521 Iron-sulphur cluster biosynthesis 8 106 1.6E-13 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 APJL_0150 65c221af600022447c4dc6d0fa0a51dc 199 Gene3D G3DSA:3.30.300.130 108 197 1.3E-18 T 11-10-2018 IPR034904 Fe-S cluster assembly domain superfamily APJL_0305 458d4ef53da1581ae056031e7b04c482 647 Gene3D G3DSA:1.10.287.380 563 646 1.1E-26 T 11-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 APJL_0305 458d4ef53da1581ae056031e7b04c482 647 Gene3D G3DSA:3.40.50.300 282 552 2.0E-64 T 11-10-2018 APJL_0305 458d4ef53da1581ae056031e7b04c482 647 Pfam PF00005 ABC transporter 19 185 5.2E-25 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0305 458d4ef53da1581ae056031e7b04c482 647 SUPERFAMILY SSF52540 306 543 9.28E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0305 458d4ef53da1581ae056031e7b04c482 647 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0305 458d4ef53da1581ae056031e7b04c482 647 Pfam PF00005 ABC transporter 335 469 3.6E-24 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0305 458d4ef53da1581ae056031e7b04c482 647 SMART SM00382 28 230 2.1E-16 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0305 458d4ef53da1581ae056031e7b04c482 647 SMART SM00382 344 515 1.4E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0305 458d4ef53da1581ae056031e7b04c482 647 SUPERFAMILY SSF52540 4 242 4.18E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0305 458d4ef53da1581ae056031e7b04c482 647 Pfam PF12848 ABC transporter 224 297 3.4E-8 T 11-10-2018 IPR032781 ABC-transporter extension domain APJL_0305 458d4ef53da1581ae056031e7b04c482 647 Gene3D G3DSA:3.40.50.300 4 279 6.7E-68 T 11-10-2018 APJL_0305 458d4ef53da1581ae056031e7b04c482 647 Pfam PF16326 ABC transporter C-terminal domain 572 640 1.5E-18 T 11-10-2018 IPR032524 ABC transporter Uup, C-terminal GO:0003677 APJL_0879 c7f02bfd801dafe90c5e852a8dbbe13a 146 Gene3D G3DSA:2.40.280.10 1 120 9.2E-46 T 11-10-2018 IPR023620 Small protein B APJL_0879 c7f02bfd801dafe90c5e852a8dbbe13a 146 ProSitePatterns PS01317 SsrA-binding protein. 17 29 - T 11-10-2018 IPR020081 SsrA-binding protein, conserved site APJL_0879 c7f02bfd801dafe90c5e852a8dbbe13a 146 TIGRFAM TIGR00086 smpB: SsrA-binding protein 2 141 2.5E-54 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 APJL_0879 c7f02bfd801dafe90c5e852a8dbbe13a 146 SUPERFAMILY SSF74982 2 123 4.84E-49 T 11-10-2018 IPR023620 Small protein B APJL_0879 c7f02bfd801dafe90c5e852a8dbbe13a 146 Pfam PF01668 SmpB protein 2 142 1.7E-57 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 APJL_0879 c7f02bfd801dafe90c5e852a8dbbe13a 146 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 1 123 1.0E-52 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 APJL_0879 c7f02bfd801dafe90c5e852a8dbbe13a 146 Hamap MF_00023 SsrA-binding protein [smpB]. 1 146 72.955 T 11-10-2018 IPR000037 SsrA-binding protein GO:0003723 APJL_0327 946aeefc20b03261c2511deadecd61cd 442 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 25 442 61.486 T 11-10-2018 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 APJL_0327 946aeefc20b03261c2511deadecd61cd 442 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 31 435 6.3E-133 T 11-10-2018 APJL_0327 946aeefc20b03261c2511deadecd61cd 442 SUPERFAMILY SSF53335 83 442 3.35E-79 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0327 946aeefc20b03261c2511deadecd61cd 442 SUPERFAMILY SSF50249 25 80 3.2E-14 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0327 946aeefc20b03261c2511deadecd61cd 442 Gene3D G3DSA:3.40.50.150 95 437 9.2E-108 T 11-10-2018 APJL_0327 946aeefc20b03261c2511deadecd61cd 442 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 425 435 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site APJL_0327 946aeefc20b03261c2511deadecd61cd 442 Gene3D G3DSA:2.40.50.140 2 94 2.9E-26 T 11-10-2018 APJL_0327 946aeefc20b03261c2511deadecd61cd 442 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 374 404 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site APJL_0327 946aeefc20b03261c2511deadecd61cd 442 Pfam PF01938 TRAM domain 26 74 2.2E-9 T 11-10-2018 IPR002792 TRAM domain APJL_0327 946aeefc20b03261c2511deadecd61cd 442 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 109 439 6.0E-24 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 APJL_0327 946aeefc20b03261c2511deadecd61cd 442 Gene3D G3DSA:3.40.1350.30 141 275 9.2E-108 T 11-10-2018 APJL_0678 04df0941b5ceeefadb2e7f60c663d864 179 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 9 175 2.2E-71 T 11-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 APJL_0678 04df0941b5ceeefadb2e7f60c663d864 179 Gene3D G3DSA:3.40.50.2020 1 178 1.7E-64 T 11-10-2018 APJL_0678 04df0941b5ceeefadb2e7f60c663d864 179 Pfam PF00156 Phosphoribosyl transferase domain 13 162 7.9E-24 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APJL_0678 04df0941b5ceeefadb2e7f60c663d864 179 SUPERFAMILY SSF53271 2 177 3.15E-55 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_1961 5573a652e5b9a23817ce0c0eb1859c6b 75 ProDom PD057827 ZN-RIBBON HI1126 PM0127 TRANSMEMBRANE ORF196EGC129 MEMBRANE SO2423 GLL0157 1 72 2.0E-25 T 11-10-2018 APJL_1961 5573a652e5b9a23817ce0c0eb1859c6b 75 Pfam PF10571 Uncharacterised protein family UPF0547 4 29 5.3E-11 T 11-10-2018 IPR018886 Uncharacterised domain UPF0547 APJL_1990 3bd46447620716ead673feff88d1fab8 139 Pfam PF06146 Phosphate-starvation-inducible E 63 126 1.3E-14 T 11-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like APJL_1990 3bd46447620716ead673feff88d1fab8 139 PIRSF PIRSF029598 7 139 3.6E-39 T 11-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 SUPERFAMILY SSF50129 2 189 2.64E-73 T 11-10-2018 IPR011032 GroES-like superfamily APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 SUPERFAMILY SSF50129 321 372 1.88E-11 T 11-10-2018 IPR011032 GroES-like superfamily APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 Gene3D G3DSA:3.40.50.720 177 315 1.6E-152 T 11-10-2018 APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 Gene3D G3DSA:3.90.180.10 9 367 1.6E-152 T 11-10-2018 APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 64 78 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 31 157 3.0E-26 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 5 372 3.8E-224 T 11-10-2018 IPR014183 Alcohol dehydrogenase class III GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00680+1.1.1.284|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396|MetaCyc: PWY-7798|Reactome: R-HSA-71384 APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 SUPERFAMILY SSF51735 163 337 6.68E-49 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 SMART SM00829 13 370 1.1E-4 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APJL_1221 e347d65914e0ccd7097231f5659fa2df 372 Pfam PF00107 Zinc-binding dehydrogenase 200 332 3.8E-25 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APJL_1946 117863ce1fb15b8e42d85d8da70a7984 165 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.246 T 11-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 APJL_1946 117863ce1fb15b8e42d85d8da70a7984 165 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 3.6E-60 T 11-10-2018 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 APJL_1946 117863ce1fb15b8e42d85d8da70a7984 165 SUPERFAMILY SSF89562 3 156 3.14E-42 T 11-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily APJL_1946 117863ce1fb15b8e42d85d8da70a7984 165 Gene3D G3DSA:3.50.30.40 1 161 3.0E-56 T 11-10-2018 APJL_1946 117863ce1fb15b8e42d85d8da70a7984 165 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 160 1.0E-83 T 11-10-2018 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 APJL_1946 117863ce1fb15b8e42d85d8da70a7984 165 Pfam PF03737 Aldolase/RraA 7 152 1.6E-35 T 11-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein APJL_0718 0e76557b28e8c7ed8832477df984caec 226 Pfam PF01865 Protein of unknown function DUF47 7 225 6.9E-61 T 11-10-2018 IPR018445 Putative phosphate transport regulator APJL_0718 0e76557b28e8c7ed8832477df984caec 226 TIGRFAM TIGR00153 TIGR00153: TIGR00153 family protein 3 225 6.6E-61 T 11-10-2018 IPR002727 Protein of unknown function DUF47 APJL_0718 0e76557b28e8c7ed8832477df984caec 226 Gene3D G3DSA:1.20.58.220 1 226 1.8E-56 T 11-10-2018 IPR038078 PhoU-like domain superfamily APJL_0718 0e76557b28e8c7ed8832477df984caec 226 SUPERFAMILY SSF109755 28 217 3.27E-15 T 11-10-2018 APJL_1949 4573cebe8c6c5eecb3dbe1b84cf3f034 270 SUPERFAMILY SSF53098 104 263 7.74E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1949 4573cebe8c6c5eecb3dbe1b84cf3f034 270 Gene3D G3DSA:3.30.420.10 105 265 8.2E-10 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1949 4573cebe8c6c5eecb3dbe1b84cf3f034 270 Pfam PF13276 HTH-like domain 33 86 3.5E-16 T 11-10-2018 IPR025948 HTH-like domain APJL_1949 4573cebe8c6c5eecb3dbe1b84cf3f034 270 Pfam PF00665 Integrase core domain 109 224 1.5E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_1107 698193983204cb7540408ca51893cfdb 475 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 5 472 1.3E-264 T 11-10-2018 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 APJL_1107 698193983204cb7540408ca51893cfdb 475 Pfam PF00206 Lyase 12 344 3.2E-106 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal APJL_1107 698193983204cb7540408ca51893cfdb 475 ProSitePatterns PS00163 Fumarate lyases signature. 319 328 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 APJL_1107 698193983204cb7540408ca51893cfdb 475 PRINTS PR00149 Fumarate lyase superfamily signature 319 335 6.1E-28 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1107 698193983204cb7540408ca51893cfdb 475 PRINTS PR00149 Fumarate lyase superfamily signature 137 155 6.1E-28 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1107 698193983204cb7540408ca51893cfdb 475 PRINTS PR00149 Fumarate lyase superfamily signature 182 200 6.1E-28 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1107 698193983204cb7540408ca51893cfdb 475 PRINTS PR00149 Fumarate lyase superfamily signature 273 300 6.1E-28 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1107 698193983204cb7540408ca51893cfdb 475 Gene3D G3DSA:1.10.275.10 5 141 5.9E-58 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal APJL_1107 698193983204cb7540408ca51893cfdb 475 Pfam PF10415 Fumarase C C-terminus 410 462 6.9E-17 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_1107 698193983204cb7540408ca51893cfdb 475 SUPERFAMILY SSF48557 1 456 1.47E-146 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APJL_1107 698193983204cb7540408ca51893cfdb 475 Gene3D G3DSA:1.10.40.30 410 459 7.1E-29 T 11-10-2018 APJL_1107 698193983204cb7540408ca51893cfdb 475 Gene3D G3DSA:1.20.200.10 142 409 1.1E-116 T 11-10-2018 APJL_1107 698193983204cb7540408ca51893cfdb 475 PRINTS PR00145 Argininosuccinate lyase family signature 319 335 4.2E-7 T 11-10-2018 APJL_1107 698193983204cb7540408ca51893cfdb 475 PRINTS PR00145 Argininosuccinate lyase family signature 177 197 4.2E-7 T 11-10-2018 APJL_1107 698193983204cb7540408ca51893cfdb 475 PRINTS PR00145 Argininosuccinate lyase family signature 136 158 4.2E-7 T 11-10-2018 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PRINTS PR00959 Mevalonate kinase family signature 118 140 5.6E-43 T 11-10-2018 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PRINTS PR00959 Mevalonate kinase family signature 25 49 5.6E-43 T 11-10-2018 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PRINTS PR00959 Mevalonate kinase family signature 330 347 5.6E-43 T 11-10-2018 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PRINTS PR00959 Mevalonate kinase family signature 161 180 5.6E-43 T 11-10-2018 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 SUPERFAMILY SSF55060 203 383 8.28E-51 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 Pfam PF00288 GHMP kinases N terminal domain 113 180 8.1E-11 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PRINTS PR00473 Galactokinase signature 111 129 7.0E-28 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PRINTS PR00473 Galactokinase signature 265 279 7.0E-28 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PRINTS PR00473 Galactokinase signature 90 101 7.0E-28 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PRINTS PR00473 Galactokinase signature 27 45 7.0E-28 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 Pfam PF08544 GHMP kinases C terminal 280 363 6.2E-13 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 Pfam PF10509 Galactokinase galactose-binding signature 9 57 2.4E-20 T 11-10-2018 IPR019539 Galactokinase galactose-binding domain GO:0005534 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 SUPERFAMILY SSF54211 5 202 7.59E-62 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 120 131 - T 11-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 Hamap MF_00246 Galactokinase [galK]. 25 383 44.304 T 11-10-2018 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 ProSitePatterns PS00106 Galactokinase signature. 27 38 - T 11-10-2018 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 PIRSF PIRSF000530 1 384 7.1E-118 T 11-10-2018 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 Gene3D G3DSA:3.30.230.10 22 200 7.3E-126 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 Gene3D G3DSA:3.30.70.890 201 358 7.3E-126 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily APJL_1012 4abd69e1fb07158d3af7c9bc8f488faa 384 TIGRFAM TIGR00131 gal_kin: galactokinase 7 382 4.0E-146 T 11-10-2018 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 APJL_1450 1a01e354d92fe41192ca987d895c23eb 337 Pfam PF02653 Branched-chain amino acid transport system / permease component 42 326 6.0E-46 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APJL_0219 fdf98b9208ccb343dda1faf6f83ddffc 449 Pfam PF09611 CRISPR-associated protein (Cas_Csy1) 52 430 1.5E-121 T 11-10-2018 IPR013397 CRISPR-associated protein Csy1 APJL_0219 fdf98b9208ccb343dda1faf6f83ddffc 449 TIGRFAM TIGR02564 cas_Csy1: CRISPR type I-F/YPEST-associated protein Csy1 52 437 1.3E-118 T 11-10-2018 IPR013397 CRISPR-associated protein Csy1 APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 Pfam PF14814 Bifunctional transglycosylase second domain 73 154 2.9E-22 T 11-10-2018 IPR028166 Bifunctional transglycosylase second domain KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 Gene3D G3DSA:3.30.2060.10 68 157 6.2E-239 T 11-10-2018 APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 Pfam PF00912 Transglycosylase 160 336 4.8E-57 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 26 752 0.0 T 11-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 Gene3D G3DSA:3.40.710.10 60 718 6.2E-239 T 11-10-2018 APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 Pfam PF00905 Penicillin binding protein transpeptidase domain 432 675 2.6E-21 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 SUPERFAMILY SSF53955 154 359 1.83E-67 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 SUPERFAMILY SSF56601 319 728 6.01E-105 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 PIRSF PIRSF002799 1 782 1.4E-299 T 11-10-2018 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00550+2.4.1.129+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1859 0f3fce5a17638776dc8e03fd818633c9 800 Gene3D G3DSA:1.10.3810.10 158 361 6.2E-239 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1174 52a9e2ae29888c7e1aab799cba3e4527 504 SUPERFAMILY SSF63411 247 445 2.93E-8 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APJL_1174 52a9e2ae29888c7e1aab799cba3e4527 504 Gene3D G3DSA:3.30.830.10 20 243 2.2E-48 T 11-10-2018 APJL_1174 52a9e2ae29888c7e1aab799cba3e4527 504 SUPERFAMILY SSF63411 16 243 1.22E-37 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APJL_1174 52a9e2ae29888c7e1aab799cba3e4527 504 Pfam PF00675 Insulinase (Peptidase family M16) 43 161 2.0E-11 T 11-10-2018 IPR011765 Peptidase M16, N-terminal APJL_1174 52a9e2ae29888c7e1aab799cba3e4527 504 Pfam PF05193 Peptidase M16 inactive domain 194 374 3.7E-15 T 11-10-2018 IPR007863 Peptidase M16, C-terminal APJL_1174 52a9e2ae29888c7e1aab799cba3e4527 504 Gene3D G3DSA:3.30.830.10 259 454 2.1E-9 T 11-10-2018 APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 3.4E-27 T 11-10-2018 IPR020069 Ribosomal protein L9, C-terminal APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 Gene3D G3DSA:3.40.5.10 1 50 1.3E-22 T 11-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 8.6E-54 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 2.5E-21 T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 SUPERFAMILY SSF55658 1 57 2.44E-18 T 11-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 Gene3D G3DSA:3.10.430.100 61 149 1.6E-30 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 11-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 SUPERFAMILY SSF55653 60 149 8.37E-26 T 11-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily APJL_1189 22b4d8c6e6de819d52bec52cb13a93f1 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 25.983 T 11-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 SUPERFAMILY SSF143800 1 81 5.49E-17 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 ProSitePatterns PS01143 Ribosomal protein L31 signature. 50 71 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 Gene3D G3DSA:2.30.170.50 1 84 2.8E-17 T 11-10-2018 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 82 26.17 T 11-10-2018 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 Pfam PF01197 Ribosomal protein L31 1 80 6.4E-21 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 81 1.5E-12 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.4E-10 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 PRINTS PR01249 Ribosomal protein L31 signature 61 79 1.4E-10 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1857 c28782df5e426d82235dbe5b787e7a7d 89 PRINTS PR01249 Ribosomal protein L31 signature 46 61 1.4E-10 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1534 10a28d0b50d1254b9db6f95fd2ded32e 149 Gene3D G3DSA:3.40.250.10 46 149 4.1E-20 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_1534 10a28d0b50d1254b9db6f95fd2ded32e 149 Pfam PF00581 Rhodanese-like domain 49 140 7.7E-14 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_1534 10a28d0b50d1254b9db6f95fd2ded32e 149 SUPERFAMILY SSF52821 22 146 6.16E-26 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_1534 10a28d0b50d1254b9db6f95fd2ded32e 149 SMART SM00450 45 143 8.7E-12 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_1158 c9bfbeda131b8ee2c81383a6152b5893 274 Gene3D G3DSA:3.40.50.720 115 236 4.2E-77 T 11-10-2018 APJL_1158 c9bfbeda131b8ee2c81383a6152b5893 274 Gene3D G3DSA:3.40.50.10860 5 253 4.2E-77 T 11-10-2018 APJL_1158 c9bfbeda131b8ee2c81383a6152b5893 274 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 88 2.3E-20 T 11-10-2018 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APJL_1158 c9bfbeda131b8ee2c81383a6152b5893 274 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 3 270 1.7E-94 T 11-10-2018 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APJL_1158 c9bfbeda131b8ee2c81383a6152b5893 274 SUPERFAMILY SSF53223 2 101 3.74E-27 T 11-10-2018 APJL_1158 c9bfbeda131b8ee2c81383a6152b5893 274 SUPERFAMILY SSF51735 102 268 4.41E-36 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1158 c9bfbeda131b8ee2c81383a6152b5893 274 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 269 30.029 T 11-10-2018 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 APJL_1158 c9bfbeda131b8ee2c81383a6152b5893 274 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 119 189 1.1E-9 T 11-10-2018 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 SUPERFAMILY SSF81271 3 61 8.83E-15 T 11-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Pfam PF03129 Anticodon binding domain 541 630 7.6E-22 T 11-10-2018 IPR004154 Anticodon-binding APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 318 529 2.3E-49 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 219 5.0E-14 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Gene3D G3DSA:3.30.980.10 69 222 2.2E-63 T 11-10-2018 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Pfam PF02824 TGS domain 4 61 2.7E-10 T 11-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 631 1.1E-246 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Gene3D G3DSA:3.30.930.10 223 531 1.7E-129 T 11-10-2018 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Gene3D G3DSA:3.10.20.30 3 62 4.9E-21 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 SUPERFAMILY SSF55186 63 241 5.36E-65 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 507 520 1.8E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 362 385 1.8E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 534 546 1.8E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 464 492 1.8E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 PRINTS PR01047 Threonyl-tRNA synthetase signature 329 357 1.8E-54 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 SUPERFAMILY SSF55681 243 525 1.87E-95 T 11-10-2018 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 634 33.979 T 11-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Gene3D G3DSA:3.40.50.800 532 639 4.3E-31 T 11-10-2018 IPR036621 Anticodon-binding domain superfamily APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 Gene3D G3DSA:3.30.54.20 130 187 2.2E-63 T 11-10-2018 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 SMART SM00863 170 219 2.3E-19 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APJL_0220 f4f96a4927fe2e4c7027accb3db4fdad 643 SUPERFAMILY SSF52954 529 634 4.98E-32 T 11-10-2018 APJL_1007 0e7febbb0fd44dbfcdc9c11e8fd4dc32 112 SUPERFAMILY SSF53098 12 105 1.82E-21 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1007 0e7febbb0fd44dbfcdc9c11e8fd4dc32 112 Gene3D G3DSA:3.30.420.10 1 111 3.9E-7 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1007 0e7febbb0fd44dbfcdc9c11e8fd4dc32 112 Pfam PF13333 Integrase core domain 56 111 2.1E-25 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_0662 50839ffab9728b072058d509883ba27b 673 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 8 667 0.0 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 APJL_0662 50839ffab9728b072058d509883ba27b 673 Pfam PF00271 Helicase conserved C-terminal domain 439 547 1.8E-17 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0662 50839ffab9728b072058d509883ba27b 673 Gene3D G3DSA:3.40.50.300 264 417 7.3E-53 T 11-10-2018 APJL_0662 50839ffab9728b072058d509883ba27b 673 Hamap MF_00204 UvrABC system protein B [uvrB]. 6 669 44.086 T 11-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 APJL_0662 50839ffab9728b072058d509883ba27b 673 Gene3D G3DSA:3.40.50.300 418 593 6.5E-50 T 11-10-2018 APJL_0662 50839ffab9728b072058d509883ba27b 673 Gene3D G3DSA:3.40.50.300 1 235 3.1E-74 T 11-10-2018 APJL_0662 50839ffab9728b072058d509883ba27b 673 Gene3D G3DSA:4.10.860.10 616 672 3.6E-12 T 11-10-2018 APJL_0662 50839ffab9728b072058d509883ba27b 673 SMART SM00487 12 428 1.6E-28 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_0662 50839ffab9728b072058d509883ba27b 673 Pfam PF04851 Type III restriction enzyme, res subunit 17 100 1.4E-8 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APJL_0662 50839ffab9728b072058d509883ba27b 673 SUPERFAMILY SSF46600 626 670 8.89E-11 T 11-10-2018 IPR036876 UVR domain superfamily APJL_0662 50839ffab9728b072058d509883ba27b 673 SUPERFAMILY SSF52540 6 418 6.0E-140 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0662 50839ffab9728b072058d509883ba27b 673 Pfam PF12344 Ultra-violet resistance protein B 555 596 3.1E-22 T 11-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain APJL_0662 50839ffab9728b072058d509883ba27b 673 SMART SM00490 463 549 2.6E-19 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0662 50839ffab9728b072058d509883ba27b 673 SUPERFAMILY SSF52540 40 584 4.59E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0662 50839ffab9728b072058d509883ba27b 673 Pfam PF02151 UvrB/uvrC motif 634 668 1.6E-8 T 11-10-2018 IPR001943 UVR domain GO:0005515 APJL_1290 342753ce5a89226f2923b8252547b818 326 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 17 320 6.0E-105 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 APJL_1290 342753ce5a89226f2923b8252547b818 326 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 5 325 40.161 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 APJL_1290 342753ce5a89226f2923b8252547b818 326 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 11 317 4.2E-116 T 11-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 APJL_1290 342753ce5a89226f2923b8252547b818 326 SUPERFAMILY SSF52540 45 155 1.77E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0712 4b9c930bcbb268c07da0dcbb1188fb27 95 Gene3D G3DSA:3.10.510.20 3 77 1.6E-31 T 11-10-2018 IPR038068 YcgL-like superfamily APJL_0712 4b9c930bcbb268c07da0dcbb1188fb27 95 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 6 85 2.0E-28 T 11-10-2018 IPR027354 YcgL domain APJL_0712 4b9c930bcbb268c07da0dcbb1188fb27 95 Hamap MF_01866 Protein YcgL [ycgL]. 4 91 26.959 T 11-10-2018 IPR027354 YcgL domain APJL_0712 4b9c930bcbb268c07da0dcbb1188fb27 95 Pfam PF05166 YcgL domain 6 78 1.8E-33 T 11-10-2018 IPR027354 YcgL domain APJL_0712 4b9c930bcbb268c07da0dcbb1188fb27 95 SUPERFAMILY SSF160191 3 91 9.02E-39 T 11-10-2018 IPR038068 YcgL-like superfamily APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 Gene3D G3DSA:1.20.120.20 23 162 3.1E-6 T 11-10-2018 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 Pfam PF02881 SRP54-type protein, helical bundle domain 285 350 1.7E-11 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 SUPERFAMILY SSF52540 366 570 2.07E-53 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 SMART SM00382 368 560 1.4E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 Gene3D G3DSA:1.20.120.140 271 568 4.3E-116 T 11-10-2018 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 SMART SM00962 369 570 2.5E-125 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 SUPERFAMILY SSF47364 269 347 1.44E-20 T 11-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 297 570 63.317 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 SMART SM00963 274 354 1.4E-20 T 11-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 Pfam PF00448 SRP54-type protein, GTPase domain 370 569 1.6E-78 T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 543 556 - T 11-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 297 569 2.2E-115 T 11-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 APJL_1364 e10b2d666ce2cbc66c3c91404875d486 573 Gene3D G3DSA:3.40.50.300 369 558 4.3E-116 T 11-10-2018 APJL_1582 56b8f55815f40ce454ee05da6a542bc0 357 Pfam PF00953 Glycosyl transferase family 4 69 228 6.3E-29 T 11-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 APJL_1582 56b8f55815f40ce454ee05da6a542bc0 357 TIGRFAM TIGR02380 ECA_wecA: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 4 344 1.8E-142 T 11-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 APJL_1582 56b8f55815f40ce454ee05da6a542bc0 357 Hamap MF_02030 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [wecA]. 4 346 27.009 T 11-10-2018 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase GO:0000287|GO:0009103|GO:0009276|GO:0016021|GO:0016780|GO:0030145 MetaCyc: PWY-7290|MetaCyc: PWY-7530|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819|MetaCyc: PWY-7905 APJL_0820 c7848903e0578af14dd0a1ed6d3f7964 320 Pfam PF08003 Protein of unknown function (DUF1698) 7 319 8.9E-168 T 11-10-2018 IPR027555 tRNA (mo5U34)-methyltransferase-like APJL_0820 c7848903e0578af14dd0a1ed6d3f7964 320 SUPERFAMILY SSF53335 89 316 1.12E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0820 c7848903e0578af14dd0a1ed6d3f7964 320 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 7 319 3.4E-144 T 11-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 APJL_0820 c7848903e0578af14dd0a1ed6d3f7964 320 Gene3D G3DSA:3.40.50.150 98 294 4.0E-22 T 11-10-2018 APJL_0820 c7848903e0578af14dd0a1ed6d3f7964 320 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 12 320 53.219 T 11-10-2018 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 APJL_0171 d72030abcbd0ef8d6580c3257d92225f 210 SMART SM00900 100 192 1.2E-33 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 APJL_0171 d72030abcbd0ef8d6580c3257d92225f 210 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 4 194 25.7 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 APJL_0171 d72030abcbd0ef8d6580c3257d92225f 210 Pfam PF04205 FMN-binding domain 100 188 4.5E-18 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 APJL_0171 d72030abcbd0ef8d6580c3257d92225f 210 PIRSF PIRSF006091 1 203 1.7E-66 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 APJL_0171 d72030abcbd0ef8d6580c3257d92225f 210 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 12 190 4.8E-58 T 11-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 APJL_2057 4ecc6d70c7888dcd9aea3be1dabdd249 145 Gene3D G3DSA:3.40.630.30 1 145 3.4E-42 T 11-10-2018 APJL_2057 4ecc6d70c7888dcd9aea3be1dabdd249 145 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 9 141 3.2E-41 T 11-10-2018 IPR006464 N-acetyltransferase RimI/Ard1 GO:0006474|GO:0016407 APJL_2057 4ecc6d70c7888dcd9aea3be1dabdd249 145 SUPERFAMILY SSF55729 2 145 5.23E-31 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_2057 4ecc6d70c7888dcd9aea3be1dabdd249 145 Pfam PF00583 Acetyltransferase (GNAT) family 40 118 5.2E-17 T 11-10-2018 IPR000182 GNAT domain APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 SUPERFAMILY SSF56235 2 234 8.41E-77 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 Pfam PF01380 SIS domain 290 416 2.2E-29 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 Pfam PF01380 SIS domain 463 592 3.9E-26 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 Gene3D G3DSA:3.60.20.10 2 241 7.2E-82 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 Gene3D G3DSA:3.40.50.10490 448 595 7.6E-148 T 11-10-2018 APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 Pfam PF13522 Glutamine amidotransferase domain 67 184 7.0E-21 T 11-10-2018 APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.865 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 SUPERFAMILY SSF53697 245 610 8.07E-111 T 11-10-2018 APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 Gene3D G3DSA:3.40.50.10490 249 609 7.6E-148 T 11-10-2018 APJL_1664 4f48e95bb20a1ddf2080eec863990e39 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 1.3E-262 T 11-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 2.7E-25 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 2.7E-25 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 298 321 2.7E-25 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 2.7E-25 T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 SUPERFAMILY SSF53671 4 333 2.36E-99 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 Gene3D G3DSA:3.40.50.1370 5 330 1.3E-136 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 Gene3D G3DSA:3.40.50.1370 151 320 1.3E-136 T 11-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 331 2.4E-53 T 11-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 6.1E-46 T 11-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 333 1.4E-136 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 312 323 1.1E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 1.1E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 1.1E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 1.1E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 1.1E-30 T 11-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 11-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 APJL_1331 ad5d744a65273db88e44cf42553fd663 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 334 80.938 T 11-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 SMART SM00493 260 331 7.2E-22 T 11-10-2018 IPR006171 TOPRIM domain APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Hamap MF_00974 DNA primase [dnaG]. 4 579 29.196 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Gene3D G3DSA:1.10.860.10 438 580 1.6E-47 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 SUPERFAMILY SSF57783 5 100 3.91E-36 T 11-10-2018 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Gene3D G3DSA:3.90.980.10 118 241 2.5E-41 T 11-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 SUPERFAMILY SSF117023 450 579 6.8E-44 T 11-10-2018 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Gene3D G3DSA:3.40.1360.10 242 368 2.4E-42 T 11-10-2018 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 PIRSF PIRSF002811 2 577 2.3E-141 T 11-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Pfam PF13155 Toprim-like 263 350 1.8E-14 T 11-10-2018 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Pfam PF10410 DnaB-helicase binding domain of primase 370 423 2.3E-12 T 11-10-2018 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Pfam PF08278 DNA primase DnaG DnaB-binding 454 577 4.9E-36 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Pfam PF01807 CHC2 zinc finger 6 100 4.9E-41 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 SMART SM00400 36 90 2.2E-37 T 11-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 SUPERFAMILY SSF56731 119 428 4.05E-109 T 11-10-2018 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Gene3D G3DSA:1.20.50.20 369 427 6.8E-26 T 11-10-2018 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Gene3D G3DSA:3.90.580.10 1 102 1.6E-38 T 11-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 SMART SM00766 453 578 1.8E-48 T 11-10-2018 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 TIGRFAM TIGR01391 dnaG: DNA primase 5 419 6.0E-148 T 11-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 APJL_1499 f8c10d207d4f5f0b61871c73c3b5076a 580 Pfam PF08275 DNA primase catalytic core, N-terminal domain 129 252 5.0E-39 T 11-10-2018 IPR013264 DNA primase, catalytic core, N-terminal APJL_0286 60da89179c123813aac3eb65426121b3 656 Gene3D G3DSA:2.40.170.20 134 656 3.4E-135 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APJL_0286 60da89179c123813aac3eb65426121b3 656 Pfam PF00593 TonB dependent receptor 219 655 1.3E-39 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APJL_0286 60da89179c123813aac3eb65426121b3 656 Pfam PF07715 TonB-dependent Receptor Plug Domain 31 128 6.9E-10 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APJL_0286 60da89179c123813aac3eb65426121b3 656 SUPERFAMILY SSF56935 41 656 3.48E-78 T 11-10-2018 APJL_0286 60da89179c123813aac3eb65426121b3 656 Gene3D G3DSA:2.170.130.10 24 133 2.9E-24 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APJL_1652 c1fa1bca71b09f43827273a41fa49cce 300 PIRSF PIRSF016502 1 300 9.1E-81 T 11-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 APJL_1652 c1fa1bca71b09f43827273a41fa49cce 300 Pfam PF03253 Urea transporter 5 281 9.9E-53 T 11-10-2018 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: R-HSA-425366 APJL_1652 c1fa1bca71b09f43827273a41fa49cce 300 Gene3D G3DSA:1.10.3430.10 1 295 1.1E-59 T 11-10-2018 IPR029020 Ammonium/urea transporter APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 Pfam PF01235 Sodium:alanine symporter family 55 453 1.6E-144 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 Gene3D G3DSA:1.20.1740.10 60 449 1.3E-5 T 11-10-2018 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 TIGRFAM TIGR00835 agcS: amino acid carrier protein 15 445 4.8E-159 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 91 106 - T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 PRINTS PR00175 Sodium/alanine symporter signature 91 113 6.6E-56 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 PRINTS PR00175 Sodium/alanine symporter signature 414 434 6.6E-56 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 PRINTS PR00175 Sodium/alanine symporter signature 308 326 6.6E-56 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 PRINTS PR00175 Sodium/alanine symporter signature 185 203 6.6E-56 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 PRINTS PR00175 Sodium/alanine symporter signature 353 375 6.6E-56 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_1146 3559d0490e923fb4accfae5bf2e6e8b3 455 PRINTS PR00175 Sodium/alanine symporter signature 213 232 6.6E-56 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Gene3D G3DSA:3.40.50.300 437 635 7.0E-41 T 11-10-2018 APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Gene3D G3DSA:3.30.360.80 714 787 4.0E-30 T 11-10-2018 APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Pfam PF00176 SNF2 family N-terminal domain 172 448 9.2E-15 T 11-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 SUPERFAMILY SSF52540 137 358 6.79E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 SUPERFAMILY SSF52540 277 648 9.09E-40 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Gene3D G3DSA:3.40.50.10810 148 436 1.2E-96 T 11-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Pfam PF00271 Helicase conserved C-terminal domain 493 603 1.9E-15 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 SMART SM00490 519 603 4.1E-10 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 967 28.551 T 11-10-2018 IPR023949 RNA polymerase-associated protein RapA GO:0006355 APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 SMART SM00487 148 347 4.9E-15 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Gene3D G3DSA:2.30.30.140 1 52 4.3E-23 T 11-10-2018 APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Gene3D G3DSA:2.30.30.930 54 112 2.5E-21 T 11-10-2018 APJL_0329 575c0750bb9e0cfae2de00be08c608b4 969 Pfam PF12137 RNA polymerase recycling family C-terminal 607 965 1.4E-150 T 11-10-2018 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 Gene3D G3DSA:2.150.10.10 728 890 8.0E-28 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR00313 NodO calcium binding signature 782 791 6.7E-9 T 11-10-2018 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR00313 NodO calcium binding signature 743 754 6.7E-9 T 11-10-2018 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR00313 NodO calcium binding signature 773 781 6.7E-9 T 11-10-2018 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR00313 NodO calcium binding signature 755 763 6.7E-9 T 11-10-2018 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 Pfam PF08339 RTX C-terminal domain 810 956 2.2E-51 T 11-10-2018 IPR013550 RTX, C-terminal APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 Pfam PF02382 RTX N-terminal domain 6 654 0.0 T 11-10-2018 IPR018504 RTX N-terminal GO:0005509|GO:0005576|GO:0009405 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 754 771 0.049 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 772 788 0.061 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 736 753 0.67 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 794 809 23.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 SUPERFAMILY SSF51120 605 853 1.31E-33 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 343 361 5.3E-79 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 538 562 5.3E-79 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 487 508 5.3E-79 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 434 450 5.3E-79 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 399 419 5.3E-79 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 277 298 5.3E-79 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_0967 cde16b1d634047ce2237b00bf80e5c49 956 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 737 758 5.3E-79 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_1025 da6d32998db320e2ac62ff2c82eb2808 416 SUPERFAMILY SSF48452 88 363 4.74E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1025 da6d32998db320e2ac62ff2c82eb2808 416 Pfam PF07219 HemY protein N-terminus 26 131 9.0E-31 T 11-10-2018 IPR010817 HemY, N-terminal APJL_1025 da6d32998db320e2ac62ff2c82eb2808 416 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 2 391 1.4E-115 T 11-10-2018 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 Gene3D G3DSA:3.30.420.340 376 551 9.5E-48 T 11-10-2018 IPR038476 UvrC homology region 2 superfamily APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 Hamap MF_00203 UvrABC system protein C [uvrC]. 1 606 28.921 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 6 588 5.6E-223 T 11-10-2018 IPR004791 UvrABC system, subunit C GO:0006289|GO:0009380|GO:0009381 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 Pfam PF01541 GIY-YIG catalytic domain 16 90 2.5E-12 T 11-10-2018 IPR000305 GIY-YIG endonuclease APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 SUPERFAMILY SSF82771 14 97 2.48E-24 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 Gene3D G3DSA:4.10.860.10 199 238 1.1E-5 T 11-10-2018 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 SUPERFAMILY SSF47781 516 608 1.94E-19 T 11-10-2018 IPR010994 RuvA domain 2-like APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 385 541 1.4E-46 T 11-10-2018 IPR001162 UvrC family homology region APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 SUPERFAMILY SSF46600 188 240 6.41E-14 T 11-10-2018 IPR036876 UVR domain superfamily APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 SMART SM00278 587 606 0.84 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 SMART SM00278 555 574 130.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 SMART SM00465 14 95 1.6E-24 T 11-10-2018 IPR000305 GIY-YIG endonuclease APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 Gene3D G3DSA:1.10.150.20 554 609 2.9E-21 T 11-10-2018 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 Gene3D G3DSA:3.40.1440.10 3 99 2.7E-32 T 11-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 APJL_0287 b5af18f341fabd9955ff399c12afd47e 610 Pfam PF02151 UvrB/uvrC motif 202 235 4.7E-10 T 11-10-2018 IPR001943 UVR domain GO:0005515 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 Gene3D G3DSA:3.90.930.12 1 82 1.2E-28 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 SUPERFAMILY SSF56053 83 177 1.56E-35 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 Pfam PF00347 Ribosomal protein L6 90 164 4.2E-18 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 Pfam PF00347 Ribosomal protein L6 11 82 1.4E-19 T 11-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 35.806 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 1.6E-34 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 1.6E-34 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 1.6E-34 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 11-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 SUPERFAMILY SSF56053 1 82 6.28E-23 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 PIRSF PIRSF002162 1 177 3.0E-46 T 11-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 8.3E-73 T 11-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 APJL_1810 25bb4f8777367b2da7fba52a8de850d3 177 Gene3D G3DSA:3.90.930.12 83 177 5.7E-39 T 11-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_2061 6adf2be260303dcc8a99f3e69131b547 493 Gene3D G3DSA:3.40.309.10 258 451 1.2E-172 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APJL_2061 6adf2be260303dcc8a99f3e69131b547 493 Gene3D G3DSA:3.40.605.10 15 479 1.2E-172 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APJL_2061 6adf2be260303dcc8a99f3e69131b547 493 SUPERFAMILY SSF53720 6 484 2.62E-164 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APJL_2061 6adf2be260303dcc8a99f3e69131b547 493 Pfam PF00171 Aldehyde dehydrogenase family 19 481 2.2E-171 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APJL_2061 6adf2be260303dcc8a99f3e69131b547 493 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 11-10-2018 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0016491|GO:0055114 APJL_2061 6adf2be260303dcc8a99f3e69131b547 493 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APJL_1274 12013c2b7bd8fcfe2fbb577e59434ee2 150 Pfam PF04214 Protein of unknown function, DUF 59 120 1.3E-26 T 11-10-2018 IPR007332 Protein of unknown function DUF411 APJL_1858 d8f25f7f4ec9e6460e6f1c45e5e1ed7b 41 Pfam PF00444 Ribosomal protein L36 1 40 3.7E-17 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1858 d8f25f7f4ec9e6460e6f1c45e5e1ed7b 41 SUPERFAMILY SSF57840 1 40 1.02E-13 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1858 d8f25f7f4ec9e6460e6f1c45e5e1ed7b 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 40 1.4E-8 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1858 d8f25f7f4ec9e6460e6f1c45e5e1ed7b 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1858 d8f25f7f4ec9e6460e6f1c45e5e1ed7b 41 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 16 40 0.004 T 11-10-2018 APJL_1858 d8f25f7f4ec9e6460e6f1c45e5e1ed7b 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.508 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1548 a6bda8f1c3eda8265250cf2099a38ec9 199 Pfam PF13460 NAD(P)H-binding 6 186 2.3E-27 T 11-10-2018 IPR016040 NAD(P)-binding domain APJL_1548 a6bda8f1c3eda8265250cf2099a38ec9 199 Gene3D G3DSA:3.40.50.720 1 199 2.8E-28 T 11-10-2018 APJL_1548 a6bda8f1c3eda8265250cf2099a38ec9 199 SUPERFAMILY SSF51735 2 197 1.03E-20 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 112 136 - T 11-10-2018 IPR020458 Zinc finger, DksA/TraR C4-type conserved site APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 Gene3D G3DSA:1.20.120.910 19 148 4.9E-35 T 11-10-2018 APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 SUPERFAMILY SSF109635 7 107 6.67E-35 T 11-10-2018 IPR037187 DksA, N-terminal domain superfamily APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 PRINTS PR00618 DksA/TraR zinc finger signature 124 136 9.7E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 PRINTS PR00618 DksA/TraR zinc finger signature 112 123 9.7E-5 T 11-10-2018 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 30 138 9.9E-50 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 SUPERFAMILY SSF57716 109 146 4.7E-10 T 11-10-2018 APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 109 141 4.8E-10 T 11-10-2018 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 APJL_0176 ae92dd2e79bbf4ba63829459040df49a 149 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 26 148 29.098 T 11-10-2018 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 APJL_0313 44181db541b64ed9782c43146f105673 226 Pfam PF01618 MotA/TolQ/ExbB proton channel family 80 207 6.9E-41 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APJL_0313 44181db541b64ed9782c43146f105673 226 Hamap MF_02202 Tol-Pal system protein TolQ [tolQ]. 5 225 42.095 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 APJL_0313 44181db541b64ed9782c43146f105673 226 TIGRFAM TIGR02796 tolQ: protein TolQ 6 220 4.0E-90 T 11-10-2018 IPR014163 Tol-Pal system, TolQ GO:0016021|GO:0043213 APJL_1125 36917e900b4f43598be96886864306e6 393 Gene3D G3DSA:3.30.1490.20 123 196 3.6E-34 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_1125 36917e900b4f43598be96886864306e6 393 Hamap MF_01643 Formate-dependent phosphoribosylglycinamide formyltransferase [purT]. 8 392 51.091 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 APJL_1125 36917e900b4f43598be96886864306e6 393 SUPERFAMILY SSF52440 3 112 7.91E-35 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APJL_1125 36917e900b4f43598be96886864306e6 393 Pfam PF02222 ATP-grasp domain 123 295 4.4E-60 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type APJL_1125 36917e900b4f43598be96886864306e6 393 Gene3D G3DSA:3.30.470.20 197 391 2.9E-63 T 11-10-2018 APJL_1125 36917e900b4f43598be96886864306e6 393 Gene3D G3DSA:3.40.50.20 2 122 3.8E-54 T 11-10-2018 APJL_1125 36917e900b4f43598be96886864306e6 393 SUPERFAMILY SSF56059 120 385 4.16E-59 T 11-10-2018 APJL_1125 36917e900b4f43598be96886864306e6 393 Pfam PF01370 NAD dependent epimerase/dehydratase family 19 82 5.9E-5 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APJL_1125 36917e900b4f43598be96886864306e6 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 392 6.4E-181 T 11-10-2018 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 APJL_0949 a68ef91065526308eb4b8f75953d6701 256 Gene3D G3DSA:3.40.50.150 11 240 2.3E-25 T 11-10-2018 APJL_0949 a68ef91065526308eb4b8f75953d6701 256 Pfam PF08241 Methyltransferase domain 50 148 7.5E-16 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 APJL_0949 a68ef91065526308eb4b8f75953d6701 256 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 12 254 1.5E-68 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 APJL_0949 a68ef91065526308eb4b8f75953d6701 256 SUPERFAMILY SSF53335 10 256 3.01E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0949 a68ef91065526308eb4b8f75953d6701 256 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 4 255 27.468 T 11-10-2018 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00780+2.1.1.197|MetaCyc: PWY-6519 APJL_1293 bc4a8c91a80f181d9ae1a743424040c3 130 Pfam PF02657 Fe-S metabolism associated domain 8 124 2.9E-31 T 11-10-2018 IPR003808 Fe-S metabolism associated domain, SufE-like APJL_1293 bc4a8c91a80f181d9ae1a743424040c3 130 Gene3D G3DSA:3.90.1010.10 1 129 1.5E-29 T 11-10-2018 APJL_1293 bc4a8c91a80f181d9ae1a743424040c3 130 SUPERFAMILY SSF82649 2 128 6.28E-33 T 11-10-2018 APJL_1621 79402ccc12b55384ef3c169ba087fe20 316 Gene3D G3DSA:3.40.190.10 112 250 3.3E-98 T 11-10-2018 APJL_1621 79402ccc12b55384ef3c169ba087fe20 316 SUPERFAMILY SSF53850 23 315 1.12E-82 T 11-10-2018 APJL_1621 79402ccc12b55384ef3c169ba087fe20 316 Gene3D G3DSA:3.40.190.10 28 314 3.3E-98 T 11-10-2018 APJL_1621 79402ccc12b55384ef3c169ba087fe20 316 Pfam PF16868 NMT1-like family 28 314 2.1E-84 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family APJL_1621 79402ccc12b55384ef3c169ba087fe20 316 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 13 314 2.5E-103 T 11-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family APJL_1278 131cbdc96de291a64918e0c213a80887 187 SUPERFAMILY SSF55469 1 178 1.57E-32 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_1278 131cbdc96de291a64918e0c213a80887 187 PIRSF PIRSF000232 1 187 1.4E-52 T 11-10-2018 IPR026021 Putative NAD(P)H nitroreductase YdjA-like APJL_1278 131cbdc96de291a64918e0c213a80887 187 Gene3D G3DSA:3.40.109.10 1 177 3.0E-38 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_1278 131cbdc96de291a64918e0c213a80887 187 Pfam PF00881 Nitroreductase family 8 162 3.7E-21 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 APJL_1065 6e56ce994f307645c7060c9059df50c6 948 Gene3D G3DSA:2.40.170.20 174 391 6.5E-29 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APJL_1065 6e56ce994f307645c7060c9059df50c6 948 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 158 2.1E-15 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APJL_1065 6e56ce994f307645c7060c9059df50c6 948 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 285 948 6.4E-120 T 11-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 APJL_1065 6e56ce994f307645c7060c9059df50c6 948 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 931 948 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APJL_1065 6e56ce994f307645c7060c9059df50c6 948 SUPERFAMILY SSF56935 22 948 1.15E-87 T 11-10-2018 APJL_1065 6e56ce994f307645c7060c9059df50c6 948 Gene3D G3DSA:2.170.130.10 42 173 4.3E-22 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APJL_1065 6e56ce994f307645c7060c9059df50c6 948 Pfam PF00593 TonB dependent receptor 430 947 1.0E-46 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 Gene3D G3DSA:1.20.5.1040 2 63 5.1E-8 T 11-10-2018 APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 SUPERFAMILY SSF55874 294 458 5.11E-29 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 SUPERFAMILY SSF47384 222 304 2.16E-15 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 304 5.0E-11 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 Gene3D G3DSA:3.30.565.10 304 458 1.0E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 450 9.5E-16 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 SMART SM00387 351 457 5.4E-18 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 398 4.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 440 4.2E-6 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 Gene3D G3DSA:1.10.287.130 189 303 7.9E-19 T 11-10-2018 APJL_1080 272e5bec62e4a4530acf9d32481c524c 458 SMART SM00388 239 305 1.2E-12 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APJL_0912 977a530b00acef84d410478cf5c997c3 313 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 7 312 48.685 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 APJL_0912 977a530b00acef84d410478cf5c997c3 313 PIRSF PIRSF026649 5 311 5.2E-88 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APJL_0912 977a530b00acef84d410478cf5c997c3 313 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 9 312 3.2E-135 T 11-10-2018 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 APJL_0912 977a530b00acef84d410478cf5c997c3 313 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 8 302 2.4E-100 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 SUPERFAMILY SSF51445 300 609 5.6E-83 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Gene3D G3DSA:3.20.20.80 299 610 1.2E-103 T 11-10-2018 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 350 375 - T 11-10-2018 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 SMART SM01038 735 999 7.5E-105 T 11-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Gene3D G3DSA:2.70.98.10 719 1000 6.9E-75 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 SUPERFAMILY SSF49785 5 206 2.41E-60 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Gene3D G3DSA:2.60.40.10 209 298 1.5E-15 T 11-10-2018 IPR013783 Immunoglobulin-like fold APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 PRINTS PR00132 Glycosyl hydrolase family 2 signature 521 536 1.5E-30 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 PRINTS PR00132 Glycosyl hydrolase family 2 signature 442 457 1.5E-30 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 PRINTS PR00132 Glycosyl hydrolase family 2 signature 309 323 1.5E-30 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 PRINTS PR00132 Glycosyl hydrolase family 2 signature 135 150 1.5E-30 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 PRINTS PR00132 Glycosyl hydrolase family 2 signature 340 358 1.5E-30 T 11-10-2018 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 46 205 7.3E-44 T 11-10-2018 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Gene3D G3DSA:2.60.40.10 613 708 4.5E-13 T 11-10-2018 IPR013783 Immunoglobulin-like fold APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Pfam PF16353 Domain of unknown function(DUF4981) 623 707 6.9E-12 T 11-10-2018 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Gene3D G3DSA:2.60.120.260 4 208 3.2E-72 T 11-10-2018 IPR008979 Galactose-binding-like domain superfamily APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 SUPERFAMILY SSF74650 720 999 2.51E-79 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 442 456 - T 11-10-2018 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Pfam PF02929 Beta galactosidase small chain 738 997 7.1E-69 T 11-10-2018 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 300 610 1.0E-88 T 11-10-2018 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 Pfam PF00703 Glycosyl hydrolases family 2 210 298 1.3E-8 T 11-10-2018 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292|Reactome: R-HSA-6798695 APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 SUPERFAMILY SSF49303 210 299 2.01E-19 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily APJL_1014 cf9d077182453ea8e2659c85e299066a 1006 SUPERFAMILY SSF49303 617 708 5.18E-13 T 11-10-2018 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 184 3.5E-5 T 11-10-2018 APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 6 239 6.5E-101 T 11-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 SUPERFAMILY SSF51735 2 240 7.26E-89 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 5.4E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 5.4E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 5.4E-15 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 9.6E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 9.6E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 202 222 9.6E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 9.6E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 9.6E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 9.6E-48 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 238 1.2E-70 T 11-10-2018 APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 Gene3D G3DSA:3.40.50.720 1 241 6.1E-88 T 11-10-2018 APJL_2040 e11bd289045d0f1849c7a6de6d6e18dc 241 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APJL_0545 b1f3dc8c1441f709abcf9d53592f54ea 425 Gene3D G3DSA:3.40.50.300 170 420 1.6E-73 T 11-10-2018 APJL_0545 b1f3dc8c1441f709abcf9d53592f54ea 425 Gene3D G3DSA:3.30.450.380 2 167 3.9E-37 T 11-10-2018 APJL_0545 b1f3dc8c1441f709abcf9d53592f54ea 425 SUPERFAMILY SSF52540 57 380 4.09E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0545 b1f3dc8c1441f709abcf9d53592f54ea 425 Pfam PF00437 Type II/IV secretion system protein 73 348 1.7E-79 T 11-10-2018 IPR001482 Type II/IV secretion system protein APJL_1486 7be06795265b56b45f5ec05fb0191e4b 251 Pfam PF14393 Domain of unknown function (DUF4422) 1 208 2.6E-85 T 11-10-2018 IPR025536 Domain of unknown function DUF4422 APJL_1180 cbfa130f9ec12ee5017b200ab8b0c3b7 205 SUPERFAMILY SSF55821 1 202 3.66E-63 T 11-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily APJL_1180 cbfa130f9ec12ee5017b200ab8b0c3b7 205 Pfam PF01300 Telomere recombination 22 197 2.1E-45 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 APJL_1180 cbfa130f9ec12ee5017b200ab8b0c3b7 205 Gene3D G3DSA:3.90.870.10 1 205 8.1E-68 T 11-10-2018 APJL_1180 cbfa130f9ec12ee5017b200ab8b0c3b7 205 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 201 2.0E-74 T 11-10-2018 IPR006070 YrdC-like domain GO:0003725 APJL_0804 da1a8bf905b5b55693b63e409ba77905 194 SUPERFAMILY SSF53697 2 189 2.04E-52 T 11-10-2018 APJL_0804 da1a8bf905b5b55693b63e409ba77905 194 Gene3D G3DSA:3.40.50.10490 1 192 3.0E-70 T 11-10-2018 APJL_0804 da1a8bf905b5b55693b63e409ba77905 194 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 35 187 1.5E-84 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 APJL_0804 da1a8bf905b5b55693b63e409ba77905 194 Pfam PF13580 SIS domain 12 146 4.4E-30 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APJL_0804 da1a8bf905b5b55693b63e409ba77905 194 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 37.141 T 11-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 APJL_1109 e721b260dc4f1bfcecd22957fc44d46d 345 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 6 334 3.7E-152 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_1109 e721b260dc4f1bfcecd22957fc44d46d 345 Pfam PF02769 AIR synthase related protein, C-terminal domain 175 340 4.3E-38 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APJL_1109 e721b260dc4f1bfcecd22957fc44d46d 345 Gene3D G3DSA:3.90.650.10 170 344 5.3E-70 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_1109 e721b260dc4f1bfcecd22957fc44d46d 345 SUPERFAMILY SSF56042 170 340 4.64E-63 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_1109 e721b260dc4f1bfcecd22957fc44d46d 345 SUPERFAMILY SSF55326 6 169 1.79E-53 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_1109 e721b260dc4f1bfcecd22957fc44d46d 345 Pfam PF00586 AIR synthase related protein, N-terminal domain 59 163 1.4E-15 T 11-10-2018 IPR016188 PurM-like, N-terminal domain APJL_1109 e721b260dc4f1bfcecd22957fc44d46d 345 Gene3D G3DSA:3.30.1330.10 5 169 1.8E-68 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_1109 e721b260dc4f1bfcecd22957fc44d46d 345 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 6 344 47.163 T 11-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 Gene3D G3DSA:3.30.420.40 196 359 2.3E-102 T 11-10-2018 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 SUPERFAMILY SSF53067 9 196 1.36E-52 T 11-10-2018 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 Gene3D G3DSA:3.90.640.10 234 300 2.3E-102 T 11-10-2018 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 SUPERFAMILY SSF53067 197 384 3.72E-44 T 11-10-2018 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 424 26.395 T 11-10-2018 IPR020823 Cell division protein FtsA APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 Pfam PF14450 Cell division protein FtsA 206 381 5.7E-25 T 11-10-2018 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 Gene3D G3DSA:3.30.1490.110 87 168 2.3E-102 T 11-10-2018 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 PIRSF PIRSF003101 1 424 1.0E-132 T 11-10-2018 IPR020823 Cell division protein FtsA APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 Pfam PF02491 SHS2 domain inserted in FTSA 85 160 3.6E-22 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 Gene3D G3DSA:3.30.420.40 13 379 2.3E-102 T 11-10-2018 APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 2.2E-135 T 11-10-2018 IPR020823 Cell division protein FtsA APJL_0023 8a98aa0826508fc2015208bd173cffc2 424 SMART SM00842 10 195 1.7E-85 T 11-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 Gene3D G3DSA:1.10.300.10 102 201 1.1E-103 T 11-10-2018 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 11-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 Pfam PF00709 Adenylosuccinate synthetase 5 423 4.4E-180 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 Gene3D G3DSA:3.90.170.10 267 432 1.6E-69 T 11-10-2018 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 SMART SM00788 4 425 3.5E-303 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 11-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 7 430 6.0E-206 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 Gene3D G3DSA:3.40.440.10 7 249 1.1E-103 T 11-10-2018 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 218.815 T 11-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 APJL_1091 a877676d2d946730c500e2b80dafc6f9 432 SUPERFAMILY SSF52540 4 430 1.91E-181 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 SUPERFAMILY SSF52540 315 590 1.06E-51 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 SMART SM00382 350 494 7.4E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Hamap MF_01973 Lon protease [lon]. 11 774 69.26 T 11-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 SUPERFAMILY SSF88697 10 200 6.46E-44 T 11-10-2018 IPR015947 PUA-like superfamily APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 572 774 1.1E-95 T 11-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 678 686 - T 11-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Gene3D G3DSA:3.30.230.10 587 774 3.4E-82 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Gene3D G3DSA:1.10.8.60 493 586 2.7E-34 T 11-10-2018 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Gene3D G3DSA:1.20.58.1480 122 246 1.0E-34 T 11-10-2018 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 PIRSF PIRSF001174 1 777 0.0 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 SUPERFAMILY SSF54211 597 772 1.37E-56 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 TIGRFAM TIGR00763 lon: endopeptidase La 12 772 2.8E-299 T 11-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 SMART SM00464 10 203 4.6E-66 T 11-10-2018 IPR003111 Lon, substrate-binding domain APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Gene3D G3DSA:3.40.50.300 315 492 2.2E-61 T 11-10-2018 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 705 724 8.5E-56 T 11-10-2018 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 358 377 8.5E-56 T 11-10-2018 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 597 613 8.5E-56 T 11-10-2018 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 675 694 8.5E-56 T 11-10-2018 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 728 746 8.5E-56 T 11-10-2018 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 354 491 1.4E-18 T 11-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 201 2.1E-42 T 11-10-2018 IPR003111 Lon, substrate-binding domain APJL_0394 2016de65deffe635ffc0cb7dd84b605b 802 Gene3D G3DSA:2.30.130.40 1 117 5.0E-36 T 11-10-2018 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 536 682 1.9E-49 T 11-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 Pfam PF09334 tRNA synthetases class I (M) 5 392 9.6E-165 T 11-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 5 531 7.3E-204 T 11-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 Pfam PF08264 Anticodon-binding domain of tRNA 415 566 9.6E-6 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 12 23 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 PRINTS PR01041 Methionyl-tRNA synthetase signature 39 53 2.0E-26 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 PRINTS PR01041 Methionyl-tRNA synthetase signature 248 259 2.0E-26 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 PRINTS PR01041 Methionyl-tRNA synthetase signature 287 302 2.0E-26 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 PRINTS PR01041 Methionyl-tRNA synthetase signature 87 98 2.0E-26 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 PRINTS PR01041 Methionyl-tRNA synthetase signature 380 391 2.0E-26 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 2.0E-26 T 11-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 541 41.281 T 11-10-2018 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 Pfam PF01588 Putative tRNA binding domain 586 679 1.4E-24 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 Gene3D G3DSA:3.40.50.620 5 380 3.5E-159 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 Gene3D G3DSA:2.40.50.140 573 682 1.4E-32 T 11-10-2018 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 Gene3D G3DSA:1.10.730.10 385 522 1.6E-35 T 11-10-2018 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 SUPERFAMILY SSF57770 139 173 1.44E-12 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 Gene3D G3DSA:2.20.28.20 139 173 3.5E-159 T 11-10-2018 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 SUPERFAMILY SSF52374 3 383 1.13E-102 T 11-10-2018 APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 SUPERFAMILY SSF50249 575 681 2.69E-30 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0368 a302d1c40ae8500a845157c17b7c7e52 682 SUPERFAMILY SSF47323 382 594 2.43E-46 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 Pfam PF03880 DbpA RNA binding domain 481 550 2.5E-19 T 11-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 Pfam PF00271 Helicase conserved C-terminal domain 232 340 7.4E-30 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 Gene3D G3DSA:3.30.70.330 480 552 1.7E-10 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 Gene3D G3DSA:3.40.50.300 217 437 4.9E-51 T 11-10-2018 APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 SMART SM00487 25 223 1.2E-61 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 Pfam PF00270 DEAD/DEAH box helicase 31 195 2.9E-50 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 Gene3D G3DSA:3.40.50.300 1 212 7.5E-74 T 11-10-2018 APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 SMART SM00490 259 340 1.8E-32 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 SUPERFAMILY SSF52540 74 361 1.39E-71 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0568 faf622d3ca63d5916f40be01a775fd4c 619 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 1 553 44.885 T 11-10-2018 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 APJL_2024 60fa47b20534656eef9f67dcf60dbddf 511 Gene3D G3DSA:3.40.640.10 114 373 5.9E-126 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_2024 60fa47b20534656eef9f67dcf60dbddf 511 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 313 334 - T 11-10-2018 IPR021115 Pyridoxal-phosphate binding site GO:0016831 APJL_2024 60fa47b20534656eef9f67dcf60dbddf 511 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 79 429 1.7E-60 T 11-10-2018 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 APJL_2024 60fa47b20534656eef9f67dcf60dbddf 511 SUPERFAMILY SSF53383 20 497 7.98E-116 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_2024 60fa47b20534656eef9f67dcf60dbddf 511 Gene3D G3DSA:3.90.1150.170 58 489 5.9E-126 T 11-10-2018 APJL_0149 6355e36d2463f68804399768ad180330 554 PRINTS PR01183 Ribonucleotide reductase large chain signature 157 176 4.5E-13 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_0149 6355e36d2463f68804399768ad180330 554 PRINTS PR01183 Ribonucleotide reductase large chain signature 324 346 4.5E-13 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_0149 6355e36d2463f68804399768ad180330 554 PRINTS PR01183 Ribonucleotide reductase large chain signature 385 412 4.5E-13 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_0149 6355e36d2463f68804399768ad180330 554 TIGRFAM TIGR02510 NrdE-prime: ribonucleoside-diphosphate reductase, alpha chain 8 554 5.2E-256 T 11-10-2018 IPR013350 Ribonucleotide reductase alpha chain APJL_0149 6355e36d2463f68804399768ad180330 554 Pfam PF02867 Ribonucleotide reductase, barrel domain 84 208 1.1E-22 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_0149 6355e36d2463f68804399768ad180330 554 Pfam PF02867 Ribonucleotide reductase, barrel domain 210 376 4.4E-27 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_0149 6355e36d2463f68804399768ad180330 554 SUPERFAMILY SSF51998 82 533 3.66E-110 T 11-10-2018 APJL_0149 6355e36d2463f68804399768ad180330 554 Pfam PF02867 Ribonucleotide reductase, barrel domain 381 532 6.2E-35 T 11-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_0149 6355e36d2463f68804399768ad180330 554 Gene3D G3DSA:3.20.70.20 209 542 5.3E-93 T 11-10-2018 APJL_0149 6355e36d2463f68804399768ad180330 554 Gene3D G3DSA:3.20.70.20 17 208 1.1E-35 T 11-10-2018 APJL_1243 7b7713248a821f1a2e6e7da2a81d929c 65 Pfam PF17320 Family of unknown function (DUF5363) 8 57 2.9E-25 T 11-10-2018 IPR035292 Protein of unknown function DUF5363 APJL_1243 7b7713248a821f1a2e6e7da2a81d929c 65 ProDom PD052088 HI1257 10 53 6.0E-5 T 11-10-2018 IPR035292 Protein of unknown function DUF5363 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 6 171 3.8E-53 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 Gene3D G3DSA:1.20.5.320 438 484 1.7E-23 T 11-10-2018 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 6 471 1.7E-238 T 11-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 181 470 5.1E-124 T 11-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 SMART SM01350 181 471 2.9E-211 T 11-10-2018 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 PIRSF PIRSF000109 1 479 3.0E-249 T 11-10-2018 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 SUPERFAMILY SSF51735 6 176 3.72E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 SUPERFAMILY SSF48179 179 474 1.7E-127 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 255 267 - T 11-10-2018 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 Gene3D G3DSA:3.40.50.720 2 182 6.0E-59 T 11-10-2018 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 Gene3D G3DSA:1.10.1040.10 183 436 3.8E-102 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 68 97 2.0E-83 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 5 28 2.0E-83 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 358 380 2.0E-83 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 251 278 2.0E-83 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 170 198 2.0E-83 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1319 dfe7ac973f58c3778cfde1ab14cf569b 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 121 146 2.0E-83 T 11-10-2018 IPR006183 6-phosphogluconate dehydrogenase GO:0004616|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|Reactome: R-HSA-71336 APJL_1539 edc1558fc0daeb93433b38d28d1d8999 316 Gene3D G3DSA:3.40.50.300 2 316 2.5E-94 T 11-10-2018 APJL_1539 edc1558fc0daeb93433b38d28d1d8999 316 Hamap MF_00215 Pantothenate kinase [coaA]. 1 316 180.706 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 APJL_1539 edc1558fc0daeb93433b38d28d1d8999 316 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 10 316 5.9E-165 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 APJL_1539 edc1558fc0daeb93433b38d28d1d8999 316 SUPERFAMILY SSF52540 7 315 7.47E-73 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1539 edc1558fc0daeb93433b38d28d1d8999 316 PIRSF PIRSF000545 1 316 1.3E-144 T 11-10-2018 IPR004566 Pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 APJL_1539 edc1558fc0daeb93433b38d28d1d8999 316 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 90 243 2.5E-14 T 11-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 APJL_1343 66f83283a7985fa012a6fdf55f2ce3b0 313 SUPERFAMILY SSF55326 5 132 2.97E-28 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_1343 66f83283a7985fa012a6fdf55f2ce3b0 313 PIRSF PIRSF005644 1 313 4.0E-113 T 11-10-2018 IPR011854 Carbamoyl dehydratase HypE APJL_1343 66f83283a7985fa012a6fdf55f2ce3b0 313 Pfam PF02769 AIR synthase related protein, C-terminal domain 143 292 8.4E-24 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APJL_1343 66f83283a7985fa012a6fdf55f2ce3b0 313 Gene3D G3DSA:3.30.1330.10 1 135 9.4E-50 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_1343 66f83283a7985fa012a6fdf55f2ce3b0 313 Gene3D G3DSA:3.90.650.10 136 313 4.5E-51 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_1343 66f83283a7985fa012a6fdf55f2ce3b0 313 SUPERFAMILY SSF56042 139 308 9.42E-39 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_1343 66f83283a7985fa012a6fdf55f2ce3b0 313 Pfam PF00586 AIR synthase related protein, N-terminal domain 30 130 2.4E-16 T 11-10-2018 IPR016188 PurM-like, N-terminal domain APJL_1343 66f83283a7985fa012a6fdf55f2ce3b0 313 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 2 313 1.9E-125 T 11-10-2018 IPR011854 Carbamoyl dehydratase HypE APJL_0241 3793dabd79bb15575889adbeb0de8020 124 Pfam PF04170 NlpE N-terminal domain 28 111 4.9E-19 T 11-10-2018 IPR007298 Copper resistance lipoprotein NlpE APJL_0241 3793dabd79bb15575889adbeb0de8020 124 Gene3D G3DSA:2.40.128.640 20 124 1.2E-20 T 11-10-2018 APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 24 62 9.0E-17 T 11-10-2018 APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 SUPERFAMILY SSF46906 56 129 2.35E-25 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 Pfam PF00298 Ribosomal protein L11, RNA binding domain 60 128 2.7E-22 T 11-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 Gene3D G3DSA:3.30.1550.10 6 60 4.3E-25 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 Pfam PF03946 Ribosomal protein L11, N-terminal domain 7 55 6.1E-23 T 11-10-2018 IPR020784 Ribosomal protein L11, N-terminal APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 7 129 1.1E-56 T 11-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 1 130 23.799 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 SMART SM00649 7 129 1.1E-67 T 11-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 SUPERFAMILY SSF54747 7 61 1.31E-22 T 11-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily APJL_1751 c6e2c0e3a93fde3d56a587777820ff98 130 Gene3D G3DSA:1.10.10.250 61 129 1.7E-26 T 11-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily APJL_1257 a64454669c78c0cbb166303ac458b057 212 Pfam PF00881 Nitroreductase family 7 185 1.5E-23 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 APJL_1257 a64454669c78c0cbb166303ac458b057 212 Gene3D G3DSA:3.40.109.10 1 205 1.0E-48 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_1257 a64454669c78c0cbb166303ac458b057 212 SUPERFAMILY SSF55469 1 204 2.09E-48 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_1914 2a1401b5f22bbb0c8019e4624b763897 307 Gene3D G3DSA:3.30.70.1070 233 307 1.5E-23 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APJL_1914 2a1401b5f22bbb0c8019e4624b763897 307 TIGRFAM TIGR02223 ftsN: cell division protein FtsN 3 305 1.3E-51 T 11-10-2018 IPR011930 Cell division protein FtsN GO:0005515 APJL_1914 2a1401b5f22bbb0c8019e4624b763897 307 SUPERFAMILY SSF110997 237 296 3.79E-16 T 11-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 APJL_1914 2a1401b5f22bbb0c8019e4624b763897 307 Pfam PF05036 Sporulation related domain 237 300 2.9E-16 T 11-10-2018 IPR007730 Sporulation-like domain GO:0042834 APJL_0844 d9e9dbd536677af79aa6534300e2abe6 184 SUPERFAMILY SSF46689 6 67 1.95E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0844 d9e9dbd536677af79aa6534300e2abe6 184 Gene3D G3DSA:1.10.357.10 4 173 6.3E-28 T 11-10-2018 APJL_0844 d9e9dbd536677af79aa6534300e2abe6 184 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 59 1.1E-6 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APJL_1890 5ef7d84ed29a7ac5db4e3a859a724dad 356 Gene3D G3DSA:3.40.50.300 2 251 4.0E-81 T 11-10-2018 APJL_1890 5ef7d84ed29a7ac5db4e3a859a724dad 356 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1890 5ef7d84ed29a7ac5db4e3a859a724dad 356 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 6.7E-116 T 11-10-2018 IPR005666 Sulphate transport system permease protein 1 GO:0008272|GO:0015419|GO:0016020|GO:0043190 KEGG: 00920+3.6.3.25 APJL_1890 5ef7d84ed29a7ac5db4e3a859a724dad 356 Pfam PF00005 ABC transporter 18 164 2.8E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1890 5ef7d84ed29a7ac5db4e3a859a724dad 356 Pfam PF12857 TOBE-like domain 287 340 1.5E-12 T 11-10-2018 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 APJL_1890 5ef7d84ed29a7ac5db4e3a859a724dad 356 SMART SM00382 27 214 4.8E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1890 5ef7d84ed29a7ac5db4e3a859a724dad 356 SUPERFAMILY SSF50331 239 340 5.95E-13 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APJL_1890 5ef7d84ed29a7ac5db4e3a859a724dad 356 SUPERFAMILY SSF52540 3 246 3.74E-86 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1876 aa59ba996ad25504eb08b43927b01ab8 330 TIGRFAM TIGR00669 asnA: aspartate--ammonia ligase 1 330 3.1E-197 T 11-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 APJL_1876 aa59ba996ad25504eb08b43927b01ab8 330 Gene3D G3DSA:3.30.930.10 1 330 2.3E-147 T 11-10-2018 APJL_1876 aa59ba996ad25504eb08b43927b01ab8 330 SUPERFAMILY SSF55681 5 330 3.12E-100 T 11-10-2018 APJL_1876 aa59ba996ad25504eb08b43927b01ab8 330 Pfam PF03590 Aspartate-ammonia ligase 9 243 6.5E-95 T 11-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 APJL_1876 aa59ba996ad25504eb08b43927b01ab8 330 PIRSF PIRSF001555 1 330 2.0E-157 T 11-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 APJL_1876 aa59ba996ad25504eb08b43927b01ab8 330 Hamap MF_00555 Aspartate--ammonia ligase [asnA]. 1 330 46.97 T 11-10-2018 IPR004618 Aspartate--ammonia ligase GO:0004071|GO:0005737|GO:0006529 KEGG: 00250+6.3.1.1|KEGG: 00460+6.3.1.1 APJL_1211 6dfe2af0a834961c5e3414c5f383512b 318 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 1 297 3.9E-64 T 11-10-2018 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 APJL_1211 6dfe2af0a834961c5e3414c5f383512b 318 Gene3D G3DSA:3.20.20.70 1 308 7.5E-98 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1211 6dfe2af0a834961c5e3414c5f383512b 318 SUPERFAMILY SSF51395 1 297 9.77E-90 T 11-10-2018 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Gene3D G3DSA:1.20.1060.30 695 806 1.5E-130 T 11-10-2018 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Gene3D G3DSA:1.20.58.850 648 858 1.5E-130 T 11-10-2018 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Gene3D G3DSA:3.40.1140.10 30 254 5.7E-89 T 11-10-2018 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 30 1496 11.095 T 11-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 SUPERFAMILY SSF52540 51 251 1.01E-20 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Gene3D G3DSA:1.20.58.850 610 880 1.5E-130 T 11-10-2018 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Gene3D G3DSA:3.40.1140.10 1409 1494 2.6E-37 T 11-10-2018 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1362 1450 1.5E-12 T 11-10-2018 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 PIRSF PIRSF005246 30 1496 0.0 T 11-10-2018 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Pfam PF04310 MukB N-terminal 31 254 1.0E-116 T 11-10-2018 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 APJL_0574 235854ff66f3c8e297642b3a2b7fb77f 1496 Pfam PF16330 MukB hinge domain 674 838 4.0E-74 T 11-10-2018 IPR032520 MukB, hinge domain APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 PRINTS PR01100 Shikimate kinase family signature 7 22 7.6E-29 T 11-10-2018 APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 PRINTS PR01100 Shikimate kinase family signature 77 86 7.6E-29 T 11-10-2018 APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 PRINTS PR01100 Shikimate kinase family signature 98 115 7.6E-29 T 11-10-2018 APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 PRINTS PR01100 Shikimate kinase family signature 31 44 7.6E-29 T 11-10-2018 APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 PRINTS PR01100 Shikimate kinase family signature 59 67 7.6E-29 T 11-10-2018 APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 Pfam PF01202 Shikimate kinase 13 169 8.9E-57 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 Gene3D G3DSA:3.40.50.300 1 172 2.8E-59 T 11-10-2018 APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 11-10-2018 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 SUPERFAMILY SSF52540 4 169 8.08E-34 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0195 d89bd80b03ca5e7577e74099fb378371 173 Hamap MF_00109 Shikimate kinase [aroK]. 4 170 30.016 T 11-10-2018 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 1 289 5.3E-144 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 213 291 4.0E-37 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 SUPERFAMILY SSF52540 3 214 8.27E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 SMART SM00382 14 141 1.5E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 Gene3D G3DSA:3.40.50.300 1 144 1.7E-33 T 11-10-2018 APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 216 290 2.4E-33 T 11-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 SUPERFAMILY SSF46785 220 290 2.35E-25 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 294 167.153 T 11-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 Gene3D G3DSA:1.10.8.60 145 218 2.8E-32 T 11-10-2018 APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 1 198 4.3E-106 T 11-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 APJL_0295 836eee5fef85f7551a63263fb1ffd3d9 294 Gene3D G3DSA:1.10.10.10 220 294 7.6E-32 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1431 7f314bfad244e4305b9620b776a22a56 114 Pfam PF12836 Helix-hairpin-helix motif 48 112 5.9E-23 T 11-10-2018 APJL_1431 7f314bfad244e4305b9620b776a22a56 114 Gene3D G3DSA:1.10.150.280 39 113 1.2E-20 T 11-10-2018 APJL_1431 7f314bfad244e4305b9620b776a22a56 114 SUPERFAMILY SSF47781 39 113 2.67E-27 T 11-10-2018 IPR010994 RuvA domain 2-like APJL_1431 7f314bfad244e4305b9620b776a22a56 114 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 48 113 1.1E-27 T 11-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain APJL_1634 bc91ec5350c7f79f95beb32d2820aa9a 104 Gene3D G3DSA:3.30.460.10 2 104 2.2E-32 T 11-10-2018 APJL_1634 bc91ec5350c7f79f95beb32d2820aa9a 104 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 6 103 7.1E-33 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS APJL_1634 bc91ec5350c7f79f95beb32d2820aa9a 104 Pfam PF02410 Ribosomal silencing factor during starvation 9 103 1.7E-25 T 11-10-2018 APJL_1634 bc91ec5350c7f79f95beb32d2820aa9a 104 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 1 104 22.508 T 11-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS APJL_1634 bc91ec5350c7f79f95beb32d2820aa9a 104 SUPERFAMILY SSF81301 4 104 8.66E-32 T 11-10-2018 APJL_2028 d655bd9db2b14dfd9bfa367181cb6ce4 368 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 7 368 1.5E-178 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 APJL_2028 d655bd9db2b14dfd9bfa367181cb6ce4 368 SUPERFAMILY SSF53335 3 367 7.52E-53 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_2028 d655bd9db2b14dfd9bfa367181cb6ce4 368 Gene3D G3DSA:3.40.1350.30 42 191 1.9E-140 T 11-10-2018 APJL_2028 d655bd9db2b14dfd9bfa367181cb6ce4 368 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 350 360 - T 11-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site APJL_2028 d655bd9db2b14dfd9bfa367181cb6ce4 368 Gene3D G3DSA:3.40.50.150 12 364 1.9E-140 T 11-10-2018 APJL_2028 d655bd9db2b14dfd9bfa367181cb6ce4 368 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 301 330 - T 11-10-2018 IPR030390 RNA methyltransferase TrmA, active site APJL_2028 d655bd9db2b14dfd9bfa367181cb6ce4 368 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 1 368 42.99 T 11-10-2018 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 APJL_2028 d655bd9db2b14dfd9bfa367181cb6ce4 368 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 7 368 3.2E-182 T 11-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 APJL_2088 aaa4eebd3dc33e13e3badfd370414f88 237 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 15 234 6.3E-108 T 11-10-2018 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0016020|GO:0044873 APJL_2088 aaa4eebd3dc33e13e3badfd370414f88 237 SUPERFAMILY SSF52540 15 235 8.57E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_2088 aaa4eebd3dc33e13e3badfd370414f88 237 Gene3D G3DSA:3.40.50.300 12 237 1.5E-69 T 11-10-2018 APJL_2088 aaa4eebd3dc33e13e3badfd370414f88 237 Pfam PF00005 ABC transporter 35 183 6.4E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_2088 aaa4eebd3dc33e13e3badfd370414f88 237 SMART SM00382 44 232 1.3E-13 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_2088 aaa4eebd3dc33e13e3badfd370414f88 237 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1139 7243d65b985eb08a2925efb81f193a46 347 Pfam PF00814 Glycoprotease family 24 312 5.7E-103 T 11-10-2018 IPR000905 Gcp-like domain APJL_1139 7243d65b985eb08a2925efb81f193a46 347 Gene3D G3DSA:3.30.420.40 129 298 1.7E-130 T 11-10-2018 APJL_1139 7243d65b985eb08a2925efb81f193a46 347 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 318 4.9E-135 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 APJL_1139 7243d65b985eb08a2925efb81f193a46 347 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 311 3.0E-128 T 11-10-2018 IPR017861 Kae1/TsaD family APJL_1139 7243d65b985eb08a2925efb81f193a46 347 Gene3D G3DSA:3.30.420.40 3 320 1.7E-130 T 11-10-2018 APJL_1139 7243d65b985eb08a2925efb81f193a46 347 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 11-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 APJL_1139 7243d65b985eb08a2925efb81f193a46 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 268 277 3.2E-52 T 11-10-2018 IPR017861 Kae1/TsaD family APJL_1139 7243d65b985eb08a2925efb81f193a46 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 3.2E-52 T 11-10-2018 IPR017861 Kae1/TsaD family APJL_1139 7243d65b985eb08a2925efb81f193a46 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 3.2E-52 T 11-10-2018 IPR017861 Kae1/TsaD family APJL_1139 7243d65b985eb08a2925efb81f193a46 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 3.2E-52 T 11-10-2018 IPR017861 Kae1/TsaD family APJL_1139 7243d65b985eb08a2925efb81f193a46 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 3.2E-52 T 11-10-2018 IPR017861 Kae1/TsaD family APJL_1139 7243d65b985eb08a2925efb81f193a46 347 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 3.2E-52 T 11-10-2018 IPR017861 Kae1/TsaD family APJL_1139 7243d65b985eb08a2925efb81f193a46 347 SUPERFAMILY SSF53067 101 313 1.2E-44 T 11-10-2018 APJL_1139 7243d65b985eb08a2925efb81f193a46 347 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 336 63.636 T 11-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 APJL_1139 7243d65b985eb08a2925efb81f193a46 347 SUPERFAMILY SSF53067 3 123 3.84E-32 T 11-10-2018 APJL_0594 a530cc86ae658ab4911595b2a4631672 142 SUPERFAMILY SSF52161 1 140 1.05E-60 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_0594 a530cc86ae658ab4911595b2a4631672 142 PIRSF PIRSF002181 1 142 4.0E-52 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APJL_0594 a530cc86ae658ab4911595b2a4631672 142 Pfam PF00572 Ribosomal protein L13 15 138 1.7E-57 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APJL_0594 a530cc86ae658ab4911595b2a4631672 142 Gene3D G3DSA:3.90.1180.10 1 142 6.7E-66 T 11-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_0594 a530cc86ae658ab4911595b2a4631672 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.676 T 11-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 APJL_0594 a530cc86ae658ab4911595b2a4631672 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 8.8E-69 T 11-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0594 a530cc86ae658ab4911595b2a4631672 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 11-10-2018 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 APJL_1852 3d42f9e2b71025dab1bc816a5e18fd38 327 Gene3D G3DSA:1.20.272.10 207 325 3.2E-13 T 11-10-2018 APJL_1852 3d42f9e2b71025dab1bc816a5e18fd38 327 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 10 197 8.0E-60 T 11-10-2018 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1852 3d42f9e2b71025dab1bc816a5e18fd38 327 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 207 321 3.2E-29 T 11-10-2018 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1852 3d42f9e2b71025dab1bc816a5e18fd38 327 Pfam PF13177 DNA polymerase III, delta subunit 8 164 4.3E-41 T 11-10-2018 APJL_1852 3d42f9e2b71025dab1bc816a5e18fd38 327 SUPERFAMILY SSF52540 3 204 3.04E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1852 3d42f9e2b71025dab1bc816a5e18fd38 327 SUPERFAMILY SSF48019 207 322 3.06E-22 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APJL_1852 3d42f9e2b71025dab1bc816a5e18fd38 327 Gene3D G3DSA:3.40.50.300 1 165 1.3E-48 T 11-10-2018 APJL_1340 243bf7c08676b6d6d89b5d243f4067fc 732 SUPERFAMILY SSF52540 7 643 3.19E-176 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1340 243bf7c08676b6d6d89b5d243f4067fc 732 Pfam PF00580 UvrD/REP helicase N-terminal domain 10 276 1.5E-81 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 APJL_1340 243bf7c08676b6d6d89b5d243f4067fc 732 Gene3D G3DSA:1.10.10.160 118 191 3.3E-99 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily APJL_1340 243bf7c08676b6d6d89b5d243f4067fc 732 Gene3D G3DSA:3.40.50.300 285 639 4.8E-133 T 11-10-2018 APJL_1340 243bf7c08676b6d6d89b5d243f4067fc 732 Gene3D G3DSA:3.40.50.300 10 277 3.3E-99 T 11-10-2018 APJL_1340 243bf7c08676b6d6d89b5d243f4067fc 732 Gene3D G3DSA:1.10.486.10 386 542 4.8E-133 T 11-10-2018 APJL_1340 243bf7c08676b6d6d89b5d243f4067fc 732 TIGRFAM TIGR01075 uvrD: DNA helicase II 6 730 0.0 T 11-10-2018 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 APJL_1340 243bf7c08676b6d6d89b5d243f4067fc 732 Pfam PF13361 UvrD-like helicase C-terminal domain 281 619 3.3E-86 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APJL_1062 27c0aef09836fe934e0afb0c80f12850 297 SUPERFAMILY SSF103481 39 141 4.58E-9 T 11-10-2018 APJL_1062 27c0aef09836fe934e0afb0c80f12850 297 Pfam PF00892 EamA-like transporter family 3 140 5.9E-12 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_1062 27c0aef09836fe934e0afb0c80f12850 297 SUPERFAMILY SSF103481 178 282 1.01E-5 T 11-10-2018 APJL_1062 27c0aef09836fe934e0afb0c80f12850 297 TIGRFAM TIGR00688 rarD: protein RarD 4 254 1.1E-61 T 11-10-2018 IPR004626 RarD protein GO:0005887 APJL_0187 29c0399b9d733e5908fbb1e1717ef27b 348 SUPERFAMILY SSF53756 7 344 1.54E-83 T 11-10-2018 APJL_0187 29c0399b9d733e5908fbb1e1717ef27b 348 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 71 297 1.4E-58 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APJL_0187 29c0399b9d733e5908fbb1e1717ef27b 348 Gene3D G3DSA:3.40.50.2000 1 153 2.4E-28 T 11-10-2018 APJL_0187 29c0399b9d733e5908fbb1e1717ef27b 348 Gene3D G3DSA:3.40.50.2000 160 347 8.6E-38 T 11-10-2018 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 3 194 1.4E-73 T 11-10-2018 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 271 283 - T 11-10-2018 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 Gene3D G3DSA:3.30.540.10 1 195 4.8E-72 T 11-10-2018 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 PIRSF PIRSF500210 1 334 1.8E-126 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 2 331 41.248 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 Gene3D G3DSA:3.40.190.80 198 334 1.1E-54 T 11-10-2018 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 PIRSF PIRSF000904 1 334 2.7E-122 T 11-10-2018 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 65 91 1.2E-61 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 206 233 1.2E-61 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 305 330 1.2E-61 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 27 54 1.2E-61 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 149 172 1.2E-61 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 180 203 1.2E-61 T 11-10-2018 IPR028343 Fructose-1,6-bisphosphatase GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 APJL_1420 079c13cccf9a706a657dab835d570e3f 334 SUPERFAMILY SSF56655 2 329 3.95E-104 T 11-10-2018 APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 Pfam PF00294 pfkB family carbohydrate kinase 1 298 3.3E-68 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 Hamap MF_01987 Ribokinase [rbsK]. 2 303 24.713 T 11-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 302 2.3E-111 T 11-10-2018 IPR011877 Ribokinase GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|Reactome: R-HSA-71336 APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 SUPERFAMILY SSF53613 1 302 4.37E-78 T 11-10-2018 IPR029056 Ribokinase-like APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 Gene3D G3DSA:3.40.1190.20 1 303 2.6E-96 T 11-10-2018 IPR029056 Ribokinase-like APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 PRINTS PR00990 Ribokinase signature 221 232 1.9E-34 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 PRINTS PR00990 Ribokinase signature 33 52 1.9E-34 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 PRINTS PR00990 Ribokinase signature 177 192 1.9E-34 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 PRINTS PR00990 Ribokinase signature 109 122 1.9E-34 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 PRINTS PR00990 Ribokinase signature 6 27 1.9E-34 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APJL_1704 5831d2f05dd991fee60bcb32c6de4369 303 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 250 263 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 SUPERFAMILY SSF52833 460 570 1.15E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 571 35.873 T 11-10-2018 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 ProSitePatterns PS00194 Thioredoxin family active site. 480 498 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 Gene3D G3DSA:3.40.30.10 446 571 2.4E-36 T 11-10-2018 APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 Gene3D G3DSA:2.60.40.1250 10 143 3.0E-39 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 Pfam PF11412 Disulphide bond corrector protein DsbC 16 126 2.4E-33 T 11-10-2018 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 SUPERFAMILY SSF74863 15 127 8.11E-36 T 11-10-2018 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 177 382 1.8E-18 T 11-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 APJL_1377 5c98e2ae6ed620a750b8771294d6a507 571 Pfam PF13098 Thioredoxin-like domain 473 568 5.9E-12 T 11-10-2018 IPR012336 Thioredoxin-like fold APJL_0234 596d29d2abc7d18e3b6d7594fad9fc72 216 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0234 596d29d2abc7d18e3b6d7594fad9fc72 216 Gene3D G3DSA:3.30.2350.10 1 197 2.5E-49 T 11-10-2018 APJL_0234 596d29d2abc7d18e3b6d7594fad9fc72 216 SUPERFAMILY SSF55120 5 196 6.08E-50 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0234 596d29d2abc7d18e3b6d7594fad9fc72 216 Pfam PF00849 RNA pseudouridylate synthase 13 156 2.8E-27 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0234 596d29d2abc7d18e3b6d7594fad9fc72 216 TIGRFAM TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621 5 208 1.7E-91 T 11-10-2018 IPR006508 Pseudouridine synthase, RluA-like APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 7 332 6.7E-108 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 207 330 1.1E-35 T 11-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 Gene3D G3DSA:3.30.465.10 71 220 4.0E-55 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 Gene3D G3DSA:3.90.78.10 221 344 7.0E-47 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 Gene3D G3DSA:3.30.43.10 5 70 1.4E-18 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 SUPERFAMILY SSF56176 5 198 1.54E-44 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 Pfam PF01565 FAD binding domain 21 151 2.0E-21 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 SUPERFAMILY SSF56194 204 341 2.75E-51 T 11-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_1893 c685aabef4cf98db056c04f1aef6e8e7 344 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 344 88.315 T 11-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0767 ee33717f359c091a2a87acadd960eb71 361 Gene3D G3DSA:2.40.10.240 64 168 3.4E-116 T 11-10-2018 APJL_0767 ee33717f359c091a2a87acadd960eb71 361 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 351 46.375 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APJL_0767 ee33717f359c091a2a87acadd960eb71 361 SUPERFAMILY SSF111337 3 350 1.44E-135 T 11-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APJL_0767 ee33717f359c091a2a87acadd960eb71 361 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 3 351 7.3E-160 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APJL_0767 ee33717f359c091a2a87acadd960eb71 361 Pfam PF02547 Queuosine biosynthesis protein 3 350 2.3E-130 T 11-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 APJL_0767 ee33717f359c091a2a87acadd960eb71 361 Gene3D G3DSA:3.40.1780.10 14 350 3.4E-116 T 11-10-2018 APJL_0749 8bda348d321895091e44d9ac481d7224 360 PIRSF PIRSF001456 3 360 3.0E-146 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_0749 8bda348d321895091e44d9ac481d7224 360 Gene3D G3DSA:3.60.150.10 1 360 3.2E-158 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_0749 8bda348d321895091e44d9ac481d7224 360 SUPERFAMILY SSF103263 4 359 1.07E-148 T 11-10-2018 IPR035904 Chorismate synthase AroC superfamily KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_0749 8bda348d321895091e44d9ac481d7224 360 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_0749 8bda348d321895091e44d9ac481d7224 360 TIGRFAM TIGR00033 aroC: chorismate synthase 10 356 1.1E-143 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_0749 8bda348d321895091e44d9ac481d7224 360 Pfam PF01264 Chorismate synthase 10 353 1.0E-143 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_0749 8bda348d321895091e44d9ac481d7224 360 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_0749 8bda348d321895091e44d9ac481d7224 360 Hamap MF_00300 Chorismate synthase [aroC]. 10 360 37.839 T 11-10-2018 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_0749 8bda348d321895091e44d9ac481d7224 360 ProSitePatterns PS00789 Chorismate synthase signature 3. 327 343 - T 11-10-2018 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 APJL_1983 030d4ced0f7759384a4bf798fa0a2f03 319 Gene3D G3DSA:3.40.50.1400 167 300 2.9E-100 T 11-10-2018 APJL_1983 030d4ced0f7759384a4bf798fa0a2f03 319 SUPERFAMILY SSF53800 3 317 4.74E-103 T 11-10-2018 APJL_1983 030d4ced0f7759384a4bf798fa0a2f03 319 Hamap MF_00323 Ferrochelatase [hemH]. 4 319 37.887 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APJL_1983 030d4ced0f7759384a4bf798fa0a2f03 319 TIGRFAM TIGR00109 hemH: ferrochelatase 2 318 1.3E-111 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APJL_1983 030d4ced0f7759384a4bf798fa0a2f03 319 ProSitePatterns PS00534 Ferrochelatase signature. 188 206 - T 11-10-2018 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APJL_1983 030d4ced0f7759384a4bf798fa0a2f03 319 Gene3D G3DSA:3.40.50.1400 5 318 2.9E-100 T 11-10-2018 APJL_1983 030d4ced0f7759384a4bf798fa0a2f03 319 Pfam PF00762 Ferrochelatase 5 318 1.0E-112 T 11-10-2018 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 APJL_0764 cec6b463ba452b91f8912b384397df54 251 Gene3D G3DSA:3.40.50.150 18 248 4.1E-44 T 11-10-2018 APJL_0764 cec6b463ba452b91f8912b384397df54 251 Pfam PF13649 Methyltransferase domain 42 139 6.3E-22 T 11-10-2018 APJL_0764 cec6b463ba452b91f8912b384397df54 251 SUPERFAMILY SSF53335 12 238 3.38E-44 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 SUPERFAMILY SSF50331 244 372 6.32E-32 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 Gene3D G3DSA:3.40.50.300 1 246 9.3E-73 T 11-10-2018 APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 Gene3D G3DSA:2.40.50.140 298 355 7.7E-43 T 11-10-2018 APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 Pfam PF08402 TOBE domain 291 363 4.0E-10 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 SMART SM00382 28 211 1.9E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 Gene3D G3DSA:2.40.50.100 248 372 7.7E-43 T 11-10-2018 APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 SUPERFAMILY SSF52540 4 251 1.44E-81 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1248 a6ce46b51da75316f7bce1f9b5171cfb 379 Pfam PF00005 ABC transporter 20 161 2.2E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0432 8e9411d0f1f7195cc355c3f8f6140647 154 SUPERFAMILY SSF54637 16 153 4.58E-50 T 11-10-2018 IPR029069 HotDog domain superfamily APJL_0432 8e9411d0f1f7195cc355c3f8f6140647 154 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 14 154 35.041 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APJL_0432 8e9411d0f1f7195cc355c3f8f6140647 154 Gene3D G3DSA:3.10.129.10 8 154 6.4E-64 T 11-10-2018 APJL_0432 8e9411d0f1f7195cc355c3f8f6140647 154 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 14 152 9.3E-62 T 11-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APJL_0432 8e9411d0f1f7195cc355c3f8f6140647 154 Pfam PF07977 FabA-like domain 23 147 7.7E-39 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.0E-46 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.353 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 SUPERFAMILY SSF54999 5 101 1.26E-36 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 1.2E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 1.2E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 1.2E-18 T 11-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 Gene3D G3DSA:3.30.70.600 1 103 3.9E-38 T 11-10-2018 IPR036838 Ribosomal protein S10 domain superfamily APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 SMART SM01403 7 101 1.0E-56 T 11-10-2018 IPR027486 Ribosomal protein S10 domain APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 11-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1794 45d53e98b9ae88d2567b52bea3a6f87c 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 2.1E-35 T 11-10-2018 IPR027486 Ribosomal protein S10 domain APJL_0623 2a0029aef107a5f5ae077350149f51db 224 Gene3D G3DSA:3.40.50.2300 56 104 9.2E-18 T 11-10-2018 APJL_0623 2a0029aef107a5f5ae077350149f51db 224 SMART SM00862 144 220 2.4E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APJL_0623 2a0029aef107a5f5ae077350149f51db 224 Pfam PF00072 Response regulator receiver domain 4 56 9.8E-10 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0623 2a0029aef107a5f5ae077350149f51db 224 SMART SM00448 2 94 5.8E-32 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0623 2a0029aef107a5f5ae077350149f51db 224 Gene3D G3DSA:3.40.50.2300 1 55 3.5E-15 T 11-10-2018 APJL_0623 2a0029aef107a5f5ae077350149f51db 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 220 3.2E-20 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APJL_0623 2a0029aef107a5f5ae077350149f51db 224 SUPERFAMILY SSF46894 119 221 1.3E-25 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APJL_0623 2a0029aef107a5f5ae077350149f51db 224 SUPERFAMILY SSF52172 1 102 1.99E-31 T 11-10-2018 IPR011006 CheY-like superfamily APJL_0623 2a0029aef107a5f5ae077350149f51db 224 Gene3D G3DSA:1.10.10.10 112 224 2.2E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0083 fbb040939780253a67b7e8d8edd90d48 356 Pfam PF02733 Dak1 domain 18 351 1.3E-125 T 11-10-2018 IPR004006 DhaK domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 APJL_0083 fbb040939780253a67b7e8d8edd90d48 356 TIGRFAM TIGR02363 dhaK1: dihydroxyacetone kinase, DhaK subunit 1 352 1.1E-145 T 11-10-2018 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 KEGG: 00561+2.7.1.121 APJL_0083 fbb040939780253a67b7e8d8edd90d48 356 Gene3D G3DSA:3.40.50.10440 11 183 1.9E-63 T 11-10-2018 APJL_0083 fbb040939780253a67b7e8d8edd90d48 356 Gene3D G3DSA:3.30.1180.20 184 356 9.4E-64 T 11-10-2018 APJL_0083 fbb040939780253a67b7e8d8edd90d48 356 SUPERFAMILY SSF82549 11 355 3.66E-125 T 11-10-2018 APJL_2070 76763f443195a933ac5543461544d451 428 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 423 2.7E-163 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 SUPERFAMILY SSF53720 3 424 1.41E-86 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APJL_2070 76763f443195a933ac5543461544d451 428 Gene3D G3DSA:3.40.50.1980 30 229 2.7E-122 T 11-10-2018 APJL_2070 76763f443195a933ac5543461544d451 428 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 227 259 - T 11-10-2018 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 424 41.211 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 PRINTS PR00083 Histidinol dehydrogenase signature 195 220 1.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 PRINTS PR00083 Histidinol dehydrogenase signature 358 376 1.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 PRINTS PR00083 Histidinol dehydrogenase signature 134 160 1.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 PRINTS PR00083 Histidinol dehydrogenase signature 249 268 1.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 PRINTS PR00083 Histidinol dehydrogenase signature 227 248 1.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 PRINTS PR00083 Histidinol dehydrogenase signature 317 342 1.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 PRINTS PR00083 Histidinol dehydrogenase signature 165 191 1.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 1.6E-100 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 Pfam PF00815 Histidinol dehydrogenase 24 424 4.2E-166 T 11-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_2070 76763f443195a933ac5543461544d451 428 Gene3D G3DSA:3.40.50.1980 231 346 2.7E-122 T 11-10-2018 APJL_2070 76763f443195a933ac5543461544d451 428 PIRSF PIRSF000099 1 427 2.8E-164 T 11-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 APJL_1558 ee7648d8dbc6ffefdd0ba6ebd2d253eb 274 SUPERFAMILY SSF54506 2 274 1.23E-60 T 11-10-2018 APJL_1558 ee7648d8dbc6ffefdd0ba6ebd2d253eb 274 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 1 272 2.8E-101 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APJL_1558 ee7648d8dbc6ffefdd0ba6ebd2d253eb 274 Gene3D G3DSA:3.10.310.10 115 261 2.1E-104 T 11-10-2018 APJL_1558 ee7648d8dbc6ffefdd0ba6ebd2d253eb 274 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 64 78 - T 11-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APJL_1558 ee7648d8dbc6ffefdd0ba6ebd2d253eb 274 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 274 38.632 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APJL_1558 ee7648d8dbc6ffefdd0ba6ebd2d253eb 274 Pfam PF01678 Diaminopimelate epimerase 3 122 4.0E-35 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APJL_1558 ee7648d8dbc6ffefdd0ba6ebd2d253eb 274 Pfam PF01678 Diaminopimelate epimerase 152 266 5.4E-31 T 11-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 APJL_1558 ee7648d8dbc6ffefdd0ba6ebd2d253eb 274 Gene3D G3DSA:3.10.310.10 3 269 2.1E-104 T 11-10-2018 APJL_1454 8d077d105141b60555509084b0ab8057 1029 SUPERFAMILY SSF46548 564 694 3.92E-8 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_1454 8d077d105141b60555509084b0ab8057 1029 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 675 686 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1454 8d077d105141b60555509084b0ab8057 1029 SUPERFAMILY SSF55103 260 545 9.16E-53 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APJL_1454 8d077d105141b60555509084b0ab8057 1029 Pfam PF13183 4Fe-4S dicluster domain 578 689 7.0E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1454 8d077d105141b60555509084b0ab8057 1029 SUPERFAMILY SSF56176 15 285 1.16E-50 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APJL_1454 8d077d105141b60555509084b0ab8057 1029 Gene3D G3DSA:3.30.465.40 16 212 1.2E-43 T 11-10-2018 APJL_1454 8d077d105141b60555509084b0ab8057 1029 Pfam PF01565 FAD binding domain 52 192 6.0E-34 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APJL_1454 8d077d105141b60555509084b0ab8057 1029 Gene3D G3DSA:3.30.70.2740 422 503 8.3E-6 T 11-10-2018 APJL_1454 8d077d105141b60555509084b0ab8057 1029 Pfam PF02913 FAD linked oxidases, C-terminal domain 285 542 3.7E-62 T 11-10-2018 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 5 195 2.1E-66 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 SUPERFAMILY SSF52317 5 196 7.09E-54 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 Pfam PF00117 Glutamine amidotransferase class-I 36 194 3.7E-22 T 11-10-2018 IPR017926 Glutamine amidotransferase APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 196 33.292 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 Gene3D G3DSA:3.40.50.880 1 197 3.0E-68 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 PRINTS PR00097 Anthranilate synthase component II signature 98 106 2.0E-5 T 11-10-2018 APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 PRINTS PR00097 Anthranilate synthase component II signature 174 187 2.0E-5 T 11-10-2018 APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 PRINTS PR00097 Anthranilate synthase component II signature 73 84 2.0E-5 T 11-10-2018 APJL_2075 68a525f0b5017aa45ca56bb2a1596b6d 197 PIRSF PIRSF000495 3 197 5.7E-64 T 11-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 APJL_1097 035c76a1d1ba0225c190245c879c510e 297 Pfam PF02574 Homocysteine S-methyltransferase 5 295 6.9E-52 T 11-10-2018 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 APJL_1097 035c76a1d1ba0225c190245c879c510e 297 Gene3D G3DSA:3.20.20.330 1 297 1.5E-62 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 APJL_1097 035c76a1d1ba0225c190245c879c510e 297 PIRSF PIRSF037505 234 297 1.9 T 11-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 APJL_1097 035c76a1d1ba0225c190245c879c510e 297 PIRSF PIRSF037505 2 112 9.3E-6 T 11-10-2018 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT GO:0005737|GO:0008270|GO:0009086|GO:0047150 Reactome: R-HSA-1614635 APJL_1097 035c76a1d1ba0225c190245c879c510e 297 SUPERFAMILY SSF82282 3 297 6.02E-71 T 11-10-2018 IPR036589 Homocysteine-binding domain superfamily Reactome: R-HSA-1614635 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 SUPERFAMILY SSF46955 403 475 1.01E-20 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 1.1E-19 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Gene3D G3DSA:3.30.930.10 490 692 5.6E-59 T 11-10-2018 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Gene3D G3DSA:3.30.56.10 401 475 6.7E-27 T 11-10-2018 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Gene3D G3DSA:3.50.40.10 197 395 7.5E-82 T 11-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 3.4E-29 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 SUPERFAMILY SSF55681 467 690 1.79E-50 T 11-10-2018 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 46.802 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Pfam PF03483 B3/4 domain 212 385 1.1E-71 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 SMART SM00874 403 471 6.9E-31 T 11-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 SUPERFAMILY SSF54991 696 794 1.12E-30 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 SMART SM00873 212 385 4.6E-98 T 11-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 SUPERFAMILY SSF56037 195 396 1.31E-77 T 11-10-2018 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 1.7E-277 T 11-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 SUPERFAMILY SSF50249 38 195 1.97E-48 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Gene3D G3DSA:3.30.70.380 702 795 3.7E-30 T 11-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Pfam PF01588 Putative tRNA binding domain 45 145 1.1E-25 T 11-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 SMART SM00896 701 794 5.1E-44 T 11-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Gene3D G3DSA:3.30.56.10 7 179 1.9E-73 T 11-10-2018 APJL_0603 9af4d271a211aacad6c04648b34b3e7f 795 Gene3D G3DSA:2.40.50.140 39 154 1.9E-73 T 11-10-2018 APJL_1335 7f2bbaa910e7841d39ebeead344754cf 541 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 25 534 7.7E-126 T 11-10-2018 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 APJL_1335 7f2bbaa910e7841d39ebeead344754cf 541 Gene3D G3DSA:1.10.3720.10 15 270 9.6E-30 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1335 7f2bbaa910e7841d39ebeead344754cf 541 Gene3D G3DSA:1.10.3720.10 297 540 2.3E-25 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1335 7f2bbaa910e7841d39ebeead344754cf 541 SUPERFAMILY SSF161098 299 534 1.44E-27 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1335 7f2bbaa910e7841d39ebeead344754cf 541 SUPERFAMILY SSF161098 24 266 1.44E-31 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1335 7f2bbaa910e7841d39ebeead344754cf 541 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 369 534 4.5E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1335 7f2bbaa910e7841d39ebeead344754cf 541 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 76 266 6.7E-7 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0959 3f264425ac8c7524de0cc212184539eb 346 Pfam PF13551 Winged helix-turn helix 11 74 4.1E-17 T 11-10-2018 APJL_0959 3f264425ac8c7524de0cc212184539eb 346 SUPERFAMILY SSF53098 160 333 2.28E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0959 3f264425ac8c7524de0cc212184539eb 346 SUPERFAMILY SSF46689 18 114 3.4E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0959 3f264425ac8c7524de0cc212184539eb 346 Gene3D G3DSA:3.30.420.10 161 329 1.6E-17 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0959 3f264425ac8c7524de0cc212184539eb 346 Pfam PF00665 Integrase core domain 161 284 4.7E-23 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_0972 3f264425ac8c7524de0cc212184539eb 346 Pfam PF13551 Winged helix-turn helix 11 74 4.1E-17 T 11-10-2018 APJL_0972 3f264425ac8c7524de0cc212184539eb 346 SUPERFAMILY SSF53098 160 333 2.28E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0972 3f264425ac8c7524de0cc212184539eb 346 SUPERFAMILY SSF46689 18 114 3.4E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0972 3f264425ac8c7524de0cc212184539eb 346 Gene3D G3DSA:3.30.420.10 161 329 1.6E-17 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0972 3f264425ac8c7524de0cc212184539eb 346 Pfam PF00665 Integrase core domain 161 284 4.7E-23 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_0066 2f053271ecda984807f85eef65c676a2 296 SUPERFAMILY SSF161098 89 277 1.2E-28 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0066 2f053271ecda984807f85eef65c676a2 296 Gene3D G3DSA:1.10.3720.10 84 291 1.5E-22 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0066 2f053271ecda984807f85eef65c676a2 296 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 13 65 4.3E-14 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APJL_0066 2f053271ecda984807f85eef65c676a2 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 295 9.7E-29 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1832 ab666579c4067c9753f19a4bca565ce9 283 SUPERFAMILY SSF56059 103 278 1.59E-18 T 11-10-2018 APJL_1832 ab666579c4067c9753f19a4bca565ce9 283 Gene3D G3DSA:3.30.1490.20 106 169 3.1E-10 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_1832 ab666579c4067c9753f19a4bca565ce9 283 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 118 207 3.1E-8 T 11-10-2018 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 APJL_1832 ab666579c4067c9753f19a4bca565ce9 283 Gene3D G3DSA:3.30.470.20 80 209 3.1E-10 T 11-10-2018 APJL_1162 d9c78424e46782fbb05c605767f45065 133 Pfam PF02631 RecX family 33 131 2.3E-25 T 11-10-2018 IPR003783 Regulatory protein RecX GO:0006282 APJL_1162 d9c78424e46782fbb05c605767f45065 133 Gene3D G3DSA:1.10.10.10 10 56 2.3E-11 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1162 d9c78424e46782fbb05c605767f45065 133 Gene3D G3DSA:1.10.10.10 58 102 4.3E-13 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0011 f2f0908608ff22e3be84d7e4f2324944 313 Gene3D G3DSA:1.10.150.170 113 217 4.3E-107 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 APJL_0011 f2f0908608ff22e3be84d7e4f2324944 313 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 6 312 1.6E-132 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 APJL_0011 f2f0908608ff22e3be84d7e4f2324944 313 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 8 313 39.098 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 APJL_0011 f2f0908608ff22e3be84d7e4f2324944 313 Pfam PF01795 MraW methylase family 7 313 1.2E-120 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 APJL_0011 f2f0908608ff22e3be84d7e4f2324944 313 SUPERFAMILY SSF81799 115 216 4.71E-33 T 11-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 APJL_0011 f2f0908608ff22e3be84d7e4f2324944 313 Gene3D G3DSA:3.40.50.150 11 312 4.3E-107 T 11-10-2018 APJL_0011 f2f0908608ff22e3be84d7e4f2324944 313 SUPERFAMILY SSF53335 8 312 1.3E-45 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0011 f2f0908608ff22e3be84d7e4f2324944 313 PIRSF PIRSF004486 2 313 7.0E-105 T 11-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 APJL_1699 a9eb48a7633feff12cbac14706121789 329 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-10-2018 APJL_1699 a9eb48a7633feff12cbac14706121789 329 Gene3D G3DSA:3.40.50.2300 160 322 2.6E-80 T 11-10-2018 APJL_1699 a9eb48a7633feff12cbac14706121789 329 SUPERFAMILY SSF53822 61 328 1.63E-86 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_1699 a9eb48a7633feff12cbac14706121789 329 Gene3D G3DSA:1.10.260.40 3 59 1.9E-23 T 11-10-2018 APJL_1699 a9eb48a7633feff12cbac14706121789 329 Pfam PF13377 Periplasmic binding protein-like domain 169 328 9.8E-40 T 11-10-2018 APJL_1699 a9eb48a7633feff12cbac14706121789 329 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.3E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_1699 a9eb48a7633feff12cbac14706121789 329 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.3E-6 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_1699 a9eb48a7633feff12cbac14706121789 329 SUPERFAMILY SSF47413 1 59 1.85E-18 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_1699 a9eb48a7633feff12cbac14706121789 329 Gene3D G3DSA:3.40.50.2300 69 321 2.6E-80 T 11-10-2018 APJL_1699 a9eb48a7633feff12cbac14706121789 329 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 1.3E-20 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_1699 a9eb48a7633feff12cbac14706121789 329 SMART SM00354 1 71 4.3E-37 T 11-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 APJL_1594 5458c60376e8a8ec49c44aad999bd5b4 485 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 352 372 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_1594 5458c60376e8a8ec49c44aad999bd5b4 485 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 247 5.2E-83 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APJL_1594 5458c60376e8a8ec49c44aad999bd5b4 485 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 437 6.4E-26 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APJL_1594 5458c60376e8a8ec49c44aad999bd5b4 485 SUPERFAMILY SSF53067 254 482 4.66E-52 T 11-10-2018 APJL_1594 5458c60376e8a8ec49c44aad999bd5b4 485 SUPERFAMILY SSF53067 1 245 2.33E-62 T 11-10-2018 APJL_1594 5458c60376e8a8ec49c44aad999bd5b4 485 Gene3D G3DSA:3.30.420.40 242 485 9.9E-53 T 11-10-2018 APJL_1594 5458c60376e8a8ec49c44aad999bd5b4 485 Gene3D G3DSA:3.30.420.40 1 240 3.3E-68 T 11-10-2018 APJL_1594 5458c60376e8a8ec49c44aad999bd5b4 485 PIRSF PIRSF000538 1 485 1.3E-95 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_0616 16f84edbde47bcafe2425d57991a8b5d 230 SUPERFAMILY SSF53067 5 107 3.06E-30 T 11-10-2018 APJL_0616 16f84edbde47bcafe2425d57991a8b5d 230 Gene3D G3DSA:3.30.420.40 96 187 1.3E-77 T 11-10-2018 APJL_0616 16f84edbde47bcafe2425d57991a8b5d 230 SUPERFAMILY SSF53067 111 216 1.36E-24 T 11-10-2018 APJL_0616 16f84edbde47bcafe2425d57991a8b5d 230 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 218 2.1E-69 T 11-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 APJL_0616 16f84edbde47bcafe2425d57991a8b5d 230 Gene3D G3DSA:3.30.420.40 5 221 1.3E-77 T 11-10-2018 APJL_0616 16f84edbde47bcafe2425d57991a8b5d 230 Pfam PF00814 Glycoprotease family 31 192 1.6E-37 T 11-10-2018 IPR000905 Gcp-like domain APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 PRINTS PR00421 Thioredoxin family signature 21 29 7.2E-10 T 11-10-2018 APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 PRINTS PR00421 Thioredoxin family signature 69 80 7.2E-10 T 11-10-2018 APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 PRINTS PR00421 Thioredoxin family signature 29 38 7.2E-10 T 11-10-2018 APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 TIGRFAM TIGR01068 thioredoxin: thioredoxin 6 104 7.5E-41 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 SUPERFAMILY SSF52833 4 105 3.13E-43 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 Gene3D G3DSA:3.40.30.10 1 105 1.1E-38 T 11-10-2018 APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 ProSitePatterns PS00194 Thioredoxin family active site. 22 40 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 Pfam PF00085 Thioredoxin 3 103 1.6E-34 T 11-10-2018 IPR013766 Thioredoxin domain GO:0045454 APJL_1094 bd370c3f1c1175ee0be31c6d9ee1a9da 105 PIRSF PIRSF000077 1 105 1.2E-45 T 11-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 APJL_1241 cccfacb31f55f06257f1f2103166cc4d 289 Pfam PF00702 haloacid dehalogenase-like hydrolase 76 247 1.4E-12 T 11-10-2018 APJL_1241 cccfacb31f55f06257f1f2103166cc4d 289 Gene3D G3DSA:1.10.150.210 84 146 1.6E-96 T 11-10-2018 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 APJL_1241 cccfacb31f55f06257f1f2103166cc4d 289 Gene3D G3DSA:3.30.70.2020 5 281 1.6E-96 T 11-10-2018 APJL_1241 cccfacb31f55f06257f1f2103166cc4d 289 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 76 246 5.8E-28 T 11-10-2018 APJL_1241 cccfacb31f55f06257f1f2103166cc4d 289 Gene3D G3DSA:3.40.50.1000 70 279 1.6E-96 T 11-10-2018 IPR023214 HAD superfamily APJL_1241 cccfacb31f55f06257f1f2103166cc4d 289 SUPERFAMILY SSF56784 76 279 4.06E-48 T 11-10-2018 IPR036412 HAD-like superfamily APJL_1241 cccfacb31f55f06257f1f2103166cc4d 289 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 62 279 2.0E-82 T 11-10-2018 APJL_0843 d462ccdc33d2135eb4e81d86d24cce3c 194 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 2 190 2.8E-66 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 APJL_0843 d462ccdc33d2135eb4e81d86d24cce3c 194 Hamap MF_00146 dCTP deaminase [dcd]. 1 190 32.622 T 11-10-2018 IPR011962 dCTP deaminase GO:0006229|GO:0008829 APJL_0843 d462ccdc33d2135eb4e81d86d24cce3c 194 Pfam PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) 3 138 1.6E-8 T 11-10-2018 IPR010550 Deoxycytidine triphosphate deaminase, bacterial GO:0008829|GO:0009394 APJL_0843 d462ccdc33d2135eb4e81d86d24cce3c 194 Gene3D G3DSA:2.70.40.10 1 194 8.6E-50 T 11-10-2018 IPR036157 dUTPase-like superfamily APJL_0843 d462ccdc33d2135eb4e81d86d24cce3c 194 SUPERFAMILY SSF51283 1 193 1.44E-55 T 11-10-2018 IPR036157 dUTPase-like superfamily APJL_1986 69155e8975ec159d0aa9737b838de5a0 78 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 13 65 5.0E-18 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor APJL_1986 69155e8975ec159d0aa9737b838de5a0 78 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 1 66 23.12 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor APJL_1986 69155e8975ec159d0aa9737b838de5a0 78 SMART SM01234 1 65 8.8E-42 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor APJL_1986 69155e8975ec159d0aa9737b838de5a0 78 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 5 75 1.0E-29 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor APJL_1986 69155e8975ec159d0aa9737b838de5a0 78 Pfam PF01809 Haemolytic domain 2 65 1.1E-29 T 11-10-2018 IPR002696 Putative membrane protein insertion efficiency factor APJL_1517 abbd6ac57257d8cf1ce78f7393e4c43a 90 Pfam PF13740 ACT domain 5 78 9.9E-12 T 11-10-2018 APJL_1517 abbd6ac57257d8cf1ce78f7393e4c43a 90 SUPERFAMILY SSF55021 5 84 3.71E-17 T 11-10-2018 APJL_1517 abbd6ac57257d8cf1ce78f7393e4c43a 90 Hamap MF_01054 UPF0237 protein . 2 90 25.357 T 11-10-2018 IPR022986 Uncharacterised protein family UPF0237, ACT-type APJL_1517 abbd6ac57257d8cf1ce78f7393e4c43a 90 Gene3D G3DSA:3.30.70.260 2 90 1.0E-24 T 11-10-2018 APJL_1896 b926f86dda90a5ed3a60bf99c6c7a9cd 270 Pfam PF13276 HTH-like domain 33 86 3.5E-16 T 11-10-2018 IPR025948 HTH-like domain APJL_1896 b926f86dda90a5ed3a60bf99c6c7a9cd 270 Gene3D G3DSA:3.30.420.10 105 265 9.6E-10 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1896 b926f86dda90a5ed3a60bf99c6c7a9cd 270 Pfam PF00665 Integrase core domain 109 224 2.4E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_1896 b926f86dda90a5ed3a60bf99c6c7a9cd 270 SUPERFAMILY SSF53098 104 263 1.18E-34 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0723 e9d281cd3a0b6ef57f0a77e660ea62fb 382 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 3 373 1.4E-186 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APJL_0723 e9d281cd3a0b6ef57f0a77e660ea62fb 382 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 365 2.2E-94 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APJL_0723 e9d281cd3a0b6ef57f0a77e660ea62fb 382 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 3 373 1.2E-175 T 11-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APJL_0723 e9d281cd3a0b6ef57f0a77e660ea62fb 382 SUPERFAMILY SSF51713 1 368 1.44E-161 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APJL_0723 e9d281cd3a0b6ef57f0a77e660ea62fb 382 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 1 368 56.214 T 11-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APJL_0723 e9d281cd3a0b6ef57f0a77e660ea62fb 382 Gene3D G3DSA:3.20.20.105 1 372 1.7E-169 T 11-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 APJL_0010 4fd104eaff6f51e23dfbccaca558de51 152 SUPERFAMILY SSF89447 1 134 3.77E-43 T 11-10-2018 IPR037914 SpoVT-AbrB domain superfamily APJL_0010 4fd104eaff6f51e23dfbccaca558de51 152 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 131 1.0E-54 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 APJL_0010 4fd104eaff6f51e23dfbccaca558de51 152 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 141 7.9E-56 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 APJL_0010 4fd104eaff6f51e23dfbccaca558de51 152 Gene3D G3DSA:2.40.330.20 1 143 5.9E-41 T 11-10-2018 IPR038619 MraZ superfamily APJL_0010 4fd104eaff6f51e23dfbccaca558de51 152 Pfam PF02381 MraZ protein, putative antitoxin-like 1 75 1.9E-20 T 11-10-2018 IPR020603 MraZ domain APJL_0010 4fd104eaff6f51e23dfbccaca558de51 152 Pfam PF02381 MraZ protein, putative antitoxin-like 80 134 6.9E-19 T 11-10-2018 IPR020603 MraZ domain APJL_0010 4fd104eaff6f51e23dfbccaca558de51 152 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 152 52.512 T 11-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 APJL_1550 8495b1fe6ccee3a21335542be3d7f9b3 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 126 190 2.5E-7 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APJL_1550 8495b1fe6ccee3a21335542be3d7f9b3 205 Gene3D G3DSA:1.20.1050.10 82 191 5.7E-40 T 11-10-2018 APJL_1550 8495b1fe6ccee3a21335542be3d7f9b3 205 Pfam PF02798 Glutathione S-transferase, N-terminal domain 3 71 2.1E-10 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APJL_1550 8495b1fe6ccee3a21335542be3d7f9b3 205 Gene3D G3DSA:3.40.30.10 1 81 2.6E-17 T 11-10-2018 APJL_1550 8495b1fe6ccee3a21335542be3d7f9b3 205 SUPERFAMILY SSF47616 68 195 1.67E-17 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APJL_1550 8495b1fe6ccee3a21335542be3d7f9b3 205 SUPERFAMILY SSF52833 1 79 1.57E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0578 b16a32aea52b29b26d6a77a542ff9f4e 192 SUPERFAMILY SSF46689 6 81 7.77E-17 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0578 b16a32aea52b29b26d6a77a542ff9f4e 192 Gene3D G3DSA:1.10.357.10 2 191 2.5E-48 T 11-10-2018 APJL_0578 b16a32aea52b29b26d6a77a542ff9f4e 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 6.8E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APJL_0578 b16a32aea52b29b26d6a77a542ff9f4e 192 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 6.8E-10 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APJL_0578 b16a32aea52b29b26d6a77a542ff9f4e 192 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APJL_0578 b16a32aea52b29b26d6a77a542ff9f4e 192 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 58 4.5E-15 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APJL_0328 ef17741733d1c5a737acf41a3a89bf92 441 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 2 441 31.764 T 11-10-2018 IPR023023 dNTP triphosphohydrolase, type 2 GO:0016793 APJL_0328 ef17741733d1c5a737acf41a3a89bf92 441 Pfam PF01966 HD domain 58 153 2.5E-7 T 11-10-2018 IPR006674 HD domain APJL_0328 ef17741733d1c5a737acf41a3a89bf92 441 SUPERFAMILY SSF109604 18 439 2.2E-74 T 11-10-2018 APJL_0328 ef17741733d1c5a737acf41a3a89bf92 441 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 20 441 3.4E-111 T 11-10-2018 IPR006261 dNTP triphosphohydrolase GO:0016793 APJL_0328 ef17741733d1c5a737acf41a3a89bf92 441 Pfam PF13286 Phosphohydrolase-associated domain 351 439 8.2E-24 T 11-10-2018 IPR026875 Phosphohydrolase-associated domain APJL_0328 ef17741733d1c5a737acf41a3a89bf92 441 SMART SM00471 54 274 6.7E-9 T 11-10-2018 IPR003607 HD/PDEase domain APJL_0189 a85052ad367db2ce8d6e92a68495d9df 163 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 152 3.9E-37 T 11-10-2018 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0101006 APJL_0189 a85052ad367db2ce8d6e92a68495d9df 163 SUPERFAMILY SSF53254 1 154 1.83E-21 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APJL_0189 a85052ad367db2ce8d6e92a68495d9df 163 PIRSF PIRSF000709 1 93 6.5E-5 T 11-10-2018 APJL_0189 a85052ad367db2ce8d6e92a68495d9df 163 PIRSF PIRSF000709 109 121 290.0 T 11-10-2018 APJL_0189 a85052ad367db2ce8d6e92a68495d9df 163 SMART SM00855 2 127 3.5E-6 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APJL_0189 a85052ad367db2ce8d6e92a68495d9df 163 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 104 1.3E-11 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APJL_0189 a85052ad367db2ce8d6e92a68495d9df 163 Gene3D G3DSA:3.40.50.1240 1 161 1.6E-33 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 Gene3D G3DSA:3.40.190.10 95 293 7.1E-75 T 11-10-2018 APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 Pfam PF03466 LysR substrate binding domain 92 295 1.1E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 SUPERFAMILY SSF53850 93 295 2.53E-37 T 11-10-2018 APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 8.1E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 SUPERFAMILY SSF46785 4 116 5.52E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 Gene3D G3DSA:1.10.10.10 5 94 4.3E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 Gene3D G3DSA:3.40.190.10 167 271 7.1E-75 T 11-10-2018 APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1177 e6915d1d0eb1bb2c1d19b2c4090e64b0 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.9E-6 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0711 4c68bb811f43744ca7249539106d7729 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 81.755 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 APJL_0711 4c68bb811f43744ca7249539106d7729 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 1.6E-67 T 11-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 APJL_0711 4c68bb811f43744ca7249539106d7729 149 Pfam PF03477 ATP cone domain 50 135 3.8E-11 T 11-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 APJL_1757 44b6f56394139c982d5376655afa3d1d 418 Pfam PF13657 HipA N-terminal domain 18 117 2.7E-16 T 11-10-2018 IPR017508 HipA, N-terminal subdomain 1 APJL_1757 44b6f56394139c982d5376655afa3d1d 418 Pfam PF07804 HipA-like C-terminal domain 159 383 5.4E-32 T 11-10-2018 IPR012893 HipA-like, C-terminal APJL_1368 a82291b04656bbbe10efc2ccd3ca8162 290 Gene3D G3DSA:3.40.50.150 107 289 7.9E-42 T 11-10-2018 APJL_1368 a82291b04656bbbe10efc2ccd3ca8162 290 SUPERFAMILY SSF53335 67 278 1.67E-34 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1368 a82291b04656bbbe10efc2ccd3ca8162 290 SUPERFAMILY SSF51197 1 101 9.34E-41 T 11-10-2018 APJL_1368 a82291b04656bbbe10efc2ccd3ca8162 290 PIRSF PIRSF005215 1 290 2.1E-146 T 11-10-2018 IPR014431 Tellurite resistance methyltransferase, TehB type-2 APJL_1368 a82291b04656bbbe10efc2ccd3ca8162 290 TIGRFAM TIGR00477 tehB: tellurite resistance protein TehB 47 288 1.3E-112 T 11-10-2018 IPR004537 Tellurite resistance methyltransferase, TehB GO:0005737|GO:0008757|GO:0046690 APJL_1368 a82291b04656bbbe10efc2ccd3ca8162 290 Pfam PF09313 Domain of unknown function (DUF1971) 8 88 2.8E-34 T 11-10-2018 IPR015392 Domain of unknown function DUF1971 APJL_1368 a82291b04656bbbe10efc2ccd3ca8162 290 Pfam PF03848 Tellurite resistance protein TehB 90 285 4.4E-99 T 11-10-2018 IPR015985 Tellurite resistance methyltransferase TehB-like domain APJL_1368 a82291b04656bbbe10efc2ccd3ca8162 290 Gene3D G3DSA:2.60.120.10 1 106 2.5E-45 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APJL_0139 b398ac8171e032f8a39760860d3baf6e 200 SUPERFAMILY SSF52016 3 194 3.34E-59 T 11-10-2018 APJL_0139 b398ac8171e032f8a39760860d3baf6e 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 1.2E-102 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 APJL_0139 b398ac8171e032f8a39760860d3baf6e 200 Gene3D G3DSA:3.20.19.10 1 180 1.3E-74 T 11-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 APJL_0139 b398ac8171e032f8a39760860d3baf6e 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 43.27 T 11-10-2018 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 APJL_0139 b398ac8171e032f8a39760860d3baf6e 200 Pfam PF00694 Aconitase C-terminal domain 1 125 1.3E-40 T 11-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 Pfam PF08281 Sigma-70, region 4 133 180 2.8E-8 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 184 7.8E-22 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 Gene3D G3DSA:1.10.1740.10 4 83 1.4E-15 T 11-10-2018 APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 Gene3D G3DSA:1.10.10.10 110 187 1.6E-9 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 Pfam PF04542 Sigma-70 region 2 21 81 6.9E-12 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 36 67 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 SUPERFAMILY SSF88659 123 184 1.42E-10 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 TIGRFAM TIGR02943 Sig70_famx1: RNA polymerase sigma-70 factor, TIGR02943 family 10 192 6.3E-73 T 11-10-2018 IPR014289 RNA polymerase sigma-24-related APJL_1869 6e254f8be4a7925d502887fbf9f92106 193 SUPERFAMILY SSF88946 17 95 3.02E-17 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 290 733 7.1E-175 T 11-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 Gene3D G3DSA:3.20.20.140 1 269 2.5E-86 T 11-10-2018 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 SMART SM00481 7 74 6.6E-21 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1029 0.0 T 11-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 Pfam PF01336 OB-fold nucleic acid binding domain 992 1068 8.5E-7 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 Gene3D G3DSA:2.40.50.140 977 1071 8.6E-8 T 11-10-2018 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 Gene3D G3DSA:1.10.10.1600 432 509 3.0E-35 T 11-10-2018 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 SUPERFAMILY SSF89550 6 262 6.28E-9 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 Pfam PF02811 PHP domain 8 168 4.1E-37 T 11-10-2018 IPR004013 PHP domain GO:0003824 APJL_1120 4127c336292d205ca8ca594fecc5bd6b 1158 Pfam PF14579 Helix-hairpin-helix motif 807 896 3.9E-25 T 11-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 SUPERFAMILY SSF52343 448 603 3.8E-52 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 16 603 1.3E-259 T 11-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 Pfam PF00175 Oxidoreductase NAD-binding domain 461 567 3.7E-20 T 11-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 Gene3D G3DSA:1.20.990.10 284 388 3.6E-72 T 11-10-2018 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 Gene3D G3DSA:3.40.50.80 449 603 1.1E-59 T 11-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 Pfam PF00667 FAD binding domain 236 428 2.6E-27 T 11-10-2018 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 SUPERFAMILY SSF63380 233 449 6.54E-63 T 11-10-2018 IPR017938 Riboflavin synthase-like beta-barrel APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 Gene3D G3DSA:2.40.30.10 237 443 3.6E-72 T 11-10-2018 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00369 Flavodoxin signature 67 80 1.0E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00369 Flavodoxin signature 147 157 1.0E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00369 Flavodoxin signature 115 126 1.0E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00369 Flavodoxin signature 171 190 1.0E-11 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 498 509 1.5E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 460 479 1.5E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 390 397 1.5E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 485 494 1.5E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 423 432 1.5E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 529 545 1.5E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 274 284 1.5E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 552 560 1.5E-28 T 11-10-2018 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 Pfam PF00258 Flavodoxin 68 193 1.1E-30 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 Gene3D G3DSA:3.40.50.360 58 218 2.5E-45 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 SUPERFAMILY SSF52218 64 209 2.29E-44 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1882 fcaba28dabd5d0d09cf2ae8ecf0992e3 603 PIRSF PIRSF000207 2 603 4.3E-247 T 11-10-2018 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 APJL_1561 77b9f28b5b90430dc92d3136ee57fccc 354 Gene3D G3DSA:1.20.1250.20 6 353 1.2E-18 T 11-10-2018 APJL_1561 77b9f28b5b90430dc92d3136ee57fccc 354 Pfam PF07690 Major Facilitator Superfamily 13 343 1.3E-13 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_1561 77b9f28b5b90430dc92d3136ee57fccc 354 SUPERFAMILY SSF103473 7 351 6.41E-21 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_1693 2ef29a605e3d5e7de168b411e7bc9f13 275 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 5 274 2.6E-124 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 APJL_1693 2ef29a605e3d5e7de168b411e7bc9f13 275 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 6 274 1.6E-108 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 APJL_1095 f64f6fe7166f63adad342548ed6fd540 430 Pfam PF00860 Permease family 17 394 7.6E-90 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 APJL_1095 f64f6fe7166f63adad342548ed6fd540 430 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 342 362 - T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APJL_1095 f64f6fe7166f63adad342548ed6fd540 430 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 12 424 2.4E-111 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APJL_1095 f64f6fe7166f63adad342548ed6fd540 430 TIGRFAM TIGR03173 pbuX: xanthine permease 21 426 3.0E-141 T 11-10-2018 IPR017588 Uric acid permease UacT-like GO:0016021|GO:0022857|GO:0055085 APJL_0146 92a14cf6f7349b806b437daf938e7f54 459 SUPERFAMILY SSF102405 125 329 3.21E-39 T 11-10-2018 APJL_0146 92a14cf6f7349b806b437daf938e7f54 459 Gene3D G3DSA:3.40.50.450 124 453 1.2E-114 T 11-10-2018 APJL_0146 92a14cf6f7349b806b437daf938e7f54 459 Pfam PF14793 Domain of unknown function (DUF4478) 6 110 1.8E-45 T 11-10-2018 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 APJL_0146 92a14cf6f7349b806b437daf938e7f54 459 Pfam PF11892 Domain of unknown function (DUF3412) 333 453 3.3E-53 T 11-10-2018 IPR021826 Domain of unknown function DUF3412 KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 APJL_0146 92a14cf6f7349b806b437daf938e7f54 459 Gene3D G3DSA:3.30.1850.10 1 117 3.6E-44 T 11-10-2018 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily KEGG: 00230+3.2.2.4|KEGG: 00240+3.2.2.10|MetaCyc: PWY-6617|MetaCyc: PWY-7569|MetaCyc: PWY-7570 APJL_0146 92a14cf6f7349b806b437daf938e7f54 459 Pfam PF03641 Possible lysine decarboxylase 190 329 3.8E-32 T 11-10-2018 IPR031100 LOG family APJL_0211 975689ba5b968bc703fc0ce7c4a377cf 51 SUPERFAMILY SSF46689 1 51 1.52E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0211 975689ba5b968bc703fc0ce7c4a377cf 51 Pfam PF13518 Helix-turn-helix domain 8 49 2.5E-6 T 11-10-2018 APJL_0969 9d75fff7d57359ae37937b7117597786 622 Gene3D G3DSA:1.20.120.890 510 622 1.7E-14 T 11-10-2018 IPR038321 TmcA, C-terminal domain superfamily APJL_0969 9d75fff7d57359ae37937b7117597786 622 Pfam PF05127 Helicase 177 326 2.7E-37 T 11-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 APJL_0969 9d75fff7d57359ae37937b7117597786 622 Pfam PF13718 GNAT acetyltransferase 2 344 453 4.2E-14 T 11-10-2018 IPR000182 GNAT domain APJL_0969 9d75fff7d57359ae37937b7117597786 622 Pfam PF13718 GNAT acetyltransferase 2 454 511 3.3E-9 T 11-10-2018 IPR000182 GNAT domain APJL_0969 9d75fff7d57359ae37937b7117597786 622 SUPERFAMILY SSF55729 350 495 5.98E-11 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_0969 9d75fff7d57359ae37937b7117597786 622 SMART SM00382 171 307 8.3E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0969 9d75fff7d57359ae37937b7117597786 622 Gene3D G3DSA:3.40.630.30 317 509 1.1E-61 T 11-10-2018 APJL_0969 9d75fff7d57359ae37937b7117597786 622 Gene3D G3DSA:3.40.50.12320 172 316 3.0E-40 T 11-10-2018 APJL_0969 9d75fff7d57359ae37937b7117597786 622 SUPERFAMILY SSF52540 104 273 5.68E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0969 9d75fff7d57359ae37937b7117597786 622 Gene3D G3DSA:3.40.50.11040 8 170 1.3E-28 T 11-10-2018 APJL_0969 9d75fff7d57359ae37937b7117597786 622 Pfam PF17176 tRNA-binding domain 515 621 5.7E-16 T 11-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain APJL_0969 9d75fff7d57359ae37937b7117597786 622 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 11 620 41.587 T 11-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 APJL_1300 bd31d10769637b7a102cc664b305326d 86 Pfam PF01722 BolA-like protein 16 74 7.2E-12 T 11-10-2018 IPR002634 BolA protein APJL_1300 bd31d10769637b7a102cc664b305326d 86 SUPERFAMILY SSF82657 1 80 1.29E-22 T 11-10-2018 IPR036065 BolA-like superfamily APJL_1300 bd31d10769637b7a102cc664b305326d 86 Gene3D G3DSA:3.30.300.90 1 85 4.0E-25 T 11-10-2018 APJL_1300 bd31d10769637b7a102cc664b305326d 86 PIRSF PIRSF003113 1 85 1.5E-20 T 11-10-2018 IPR002634 BolA protein APJL_0692 4a489e59ca2019b919639fb83263f7a4 163 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 153 24.742 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APJL_0692 4a489e59ca2019b919639fb83263f7a4 163 SUPERFAMILY SSF55486 22 156 5.13E-50 T 11-10-2018 APJL_0692 4a489e59ca2019b919639fb83263f7a4 163 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 45 150 2.7E-37 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APJL_0692 4a489e59ca2019b919639fb83263f7a4 163 Pfam PF02130 Uncharacterized protein family UPF0054 25 149 1.3E-39 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APJL_0692 4a489e59ca2019b919639fb83263f7a4 163 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 119 129 - T 11-10-2018 IPR020549 Endoribonuclease YbeY, conserved site APJL_0692 4a489e59ca2019b919639fb83263f7a4 163 Gene3D G3DSA:3.40.390.30 1 160 3.6E-57 T 11-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 Pfam PF00384 Molybdopterin oxidoreductase 94 560 3.8E-111 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 SUPERFAMILY SSF53706 52 676 2.49E-174 T 11-10-2018 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 TIGRFAM TIGR00509 bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxide reductases 51 821 0.0 T 11-10-2018 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase GO:0016491|GO:0055114 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 Gene3D G3DSA:3.40.50.740 94 568 1.7E-246 T 11-10-2018 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 Pfam PF01568 Molydopterin dinucleotide binding domain 678 798 1.3E-27 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 SUPERFAMILY SSF50692 669 821 4.29E-44 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 717 744 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 Gene3D G3DSA:3.90.55.10 90 619 1.7E-246 T 11-10-2018 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 Gene3D G3DSA:2.40.40.20 653 816 1.3E-50 T 11-10-2018 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 502 519 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APJL_0686 c19e25163984ff2cc94989dd5d2ae2ef 824 Gene3D G3DSA:3.40.228.10 185 645 1.7E-246 T 11-10-2018 APJL_0511 bb3efa1ec1ba79f5358eb6b5f03211e8 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 47 62 1.0E-6 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_0511 bb3efa1ec1ba79f5358eb6b5f03211e8 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 62 77 1.0E-6 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_0511 bb3efa1ec1ba79f5358eb6b5f03211e8 95 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 15 30 1.0E-6 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_0511 bb3efa1ec1ba79f5358eb6b5f03211e8 95 Gene3D G3DSA:1.10.10.10 2 95 3.9E-24 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0511 bb3efa1ec1ba79f5358eb6b5f03211e8 95 SUPERFAMILY SSF46785 10 94 1.63E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0511 bb3efa1ec1ba79f5358eb6b5f03211e8 95 SMART SM00418 13 91 9.3E-23 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_0511 bb3efa1ec1ba79f5358eb6b5f03211e8 95 Pfam PF01022 Bacterial regulatory protein, arsR family 20 64 1.2E-12 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_1636 e31c942d9ee69011a39f0d8656239d78 249 SUPERFAMILY SSF52540 1 242 3.99E-77 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1636 e31c942d9ee69011a39f0d8656239d78 249 SMART SM00382 26 220 2.2E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1636 e31c942d9ee69011a39f0d8656239d78 249 Pfam PF00005 ABC transporter 17 172 1.3E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1636 e31c942d9ee69011a39f0d8656239d78 249 PIRSF PIRSF039085 1 248 6.7E-110 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APJL_1636 e31c942d9ee69011a39f0d8656239d78 249 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1636 e31c942d9ee69011a39f0d8656239d78 249 Gene3D G3DSA:3.40.50.300 1 248 1.3E-77 T 11-10-2018 APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 Hamap MF_00811 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 271 55.625 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 Gene3D G3DSA:2.160.10.10 86 256 4.0E-60 T 11-10-2018 APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 131 165 4.0E-5 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 TIGRFAM TIGR00965 dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 272 4.8E-151 T 11-10-2018 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family GO:0008666|GO:0009089 KEGG: 00300+2.3.1.117 APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 Pfam PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal 2 68 5.9E-27 T 11-10-2018 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 KEGG: 00300+2.3.1.117 APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 SUPERFAMILY SSF51161 2 255 3.19E-80 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 Gene3D G3DSA:1.10.166.10 1 69 9.5E-33 T 11-10-2018 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily KEGG: 00300+2.3.1.117 APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 133 161 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APJL_1904 ea77ad41cc9d74c67122e8381c5c0585 274 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 174 208 5.9E-14 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_1586 76d6fbd169f6105eb08b04a54fa84936 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.79 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1586 76d6fbd169f6105eb08b04a54fa84936 87 Pfam PF01649 Ribosomal protein S20 2 84 1.1E-26 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1586 76d6fbd169f6105eb08b04a54fa84936 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 67 2.0E-16 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1586 76d6fbd169f6105eb08b04a54fa84936 87 SUPERFAMILY SSF46992 3 86 7.72E-31 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1586 76d6fbd169f6105eb08b04a54fa84936 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 87 1.5E-33 T 11-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1586 76d6fbd169f6105eb08b04a54fa84936 87 Gene3D G3DSA:1.20.58.110 1 87 6.6E-30 T 11-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 Gene3D G3DSA:3.40.50.300 35 261 9.9E-78 T 11-10-2018 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 SMART SM00847 470 559 8.5E-35 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 22 1295 0.0 T 11-10-2018 IPR010222 RNA helicase HrpA GO:0004004 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 Gene3D G3DSA:3.40.50.300 262 427 4.6E-58 T 11-10-2018 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 Pfam PF04408 Helicase associated domain (HA2) 473 557 1.3E-16 T 11-10-2018 IPR007502 Helicase-associated domain GO:0004386 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 Pfam PF00271 Helicase conserved C-terminal domain 292 409 4.5E-13 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 Pfam PF11898 Domain of unknown function (DUF3418) 713 1295 2.7E-226 T 11-10-2018 IPR024590 RNA helicase HrpA, C-terminal APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 SMART SM00487 84 268 1.1E-29 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 622 699 1.3E-20 T 11-10-2018 IPR011709 Domain of unknown function DUF1605 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 SUPERFAMILY SSF52540 86 601 5.18E-108 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 Gene3D G3DSA:1.20.120.1080 454 551 5.3E-16 T 11-10-2018 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 SMART SM00382 101 390 5.5E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 Pfam PF00270 DEAD/DEAH box helicase 93 242 6.6E-10 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APJL_0383 b74db663fc17460c311494debdd2f8bb 1299 SMART SM00490 310 410 8.4E-16 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1554 1c5aa804241d40dc23db4445f1c72959 130 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 9 118 1.0E-49 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 APJL_1554 1c5aa804241d40dc23db4445f1c72959 130 Pfam PF02300 Fumarate reductase subunit C 5 127 3.7E-45 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 APJL_1554 1c5aa804241d40dc23db4445f1c72959 130 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 4 128 26.812 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 APJL_1554 1c5aa804241d40dc23db4445f1c72959 130 SUPERFAMILY SSF81343 5 129 8.99E-50 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1554 1c5aa804241d40dc23db4445f1c72959 130 Gene3D G3DSA:1.20.1300.10 4 130 3.0E-38 T 11-10-2018 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1554 1c5aa804241d40dc23db4445f1c72959 130 PIRSF PIRSF000180 4 130 6.2E-50 T 11-10-2018 IPR003510 Fumarate reductase, subunit C GO:0016020 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 Pfam PF01336 OB-fold nucleic acid binding domain 21 100 1.0E-8 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 6 467 8.3E-210 T 11-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 SUPERFAMILY SSF50249 16 103 2.69E-16 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0670 c8daea455c1942da7839221e189e9fd9 467 Gene3D G3DSA:2.40.50.140 2 105 8.8E-19 T 11-10-2018 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 PRINTS PR01042 Aspartyl-tRNA synthetase signature 225 238 2.3E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 PRINTS PR01042 Aspartyl-tRNA synthetase signature 422 436 2.3E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 PRINTS PR01042 Aspartyl-tRNA synthetase signature 209 221 2.3E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 PRINTS PR01042 Aspartyl-tRNA synthetase signature 382 398 2.3E-14 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 SUPERFAMILY SSF55681 99 465 4.98E-97 T 11-10-2018 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 Pfam PF00152 tRNA synthetases class II (D, K and N) 120 460 1.0E-81 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 Gene3D G3DSA:3.30.930.10 110 466 1.2E-109 T 11-10-2018 APJL_0670 c8daea455c1942da7839221e189e9fd9 467 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 467 46.484 T 11-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 APJL_1018 fb77bcc70cab3b77ea524c00ab135242 365 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 101 344 3.7E-102 T 11-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 APJL_1018 fb77bcc70cab3b77ea524c00ab135242 365 ProSitePatterns PS01215 Mrp family signature. 208 224 - T 11-10-2018 IPR000808 Mrp, conserved site GO:0005524 APJL_1018 fb77bcc70cab3b77ea524c00ab135242 365 Gene3D G3DSA:3.40.50.300 88 343 1.5E-81 T 11-10-2018 APJL_1018 fb77bcc70cab3b77ea524c00ab135242 365 Hamap MF_02040 Iron-sulfur cluster carrier protein. 96 345 37.497 T 11-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein APJL_1018 fb77bcc70cab3b77ea524c00ab135242 365 SUPERFAMILY SSF52540 103 349 3.73E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1974 e2826b6c8e2cc999ced07a02b9147e0e 254 Pfam PF01975 Survival protein SurE 3 190 8.1E-60 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 APJL_1974 e2826b6c8e2cc999ced07a02b9147e0e 254 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 254 38.074 T 11-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 APJL_1974 e2826b6c8e2cc999ced07a02b9147e0e 254 SUPERFAMILY SSF64167 1 253 1.15E-83 T 11-10-2018 APJL_1974 e2826b6c8e2cc999ced07a02b9147e0e 254 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 242 2.6E-72 T 11-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 APJL_1974 e2826b6c8e2cc999ced07a02b9147e0e 254 Gene3D G3DSA:3.40.1210.10 1 254 3.5E-90 T 11-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 APJL_1807 2de6319570f1a256f926d45a77c91ef6 179 Pfam PF00281 Ribosomal protein L5 24 80 8.2E-29 T 11-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1807 2de6319570f1a256f926d45a77c91ef6 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 11-10-2018 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1807 2de6319570f1a256f926d45a77c91ef6 179 Gene3D G3DSA:3.30.1440.10 1 179 3.0E-80 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1807 2de6319570f1a256f926d45a77c91ef6 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 44.78 T 11-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1807 2de6319570f1a256f926d45a77c91ef6 179 SUPERFAMILY SSF55282 4 179 6.83E-79 T 11-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1807 2de6319570f1a256f926d45a77c91ef6 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.3E-40 T 11-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1807 2de6319570f1a256f926d45a77c91ef6 179 PIRSF PIRSF002161 1 179 3.4E-67 T 11-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_0307 0fe555e651d599b17487bfefd9cf2bd6 110 Pfam PF17274 Family of unknown function (DUF5339) 42 109 2.7E-23 T 11-10-2018 IPR020493 Uncharacterised protein family HI0310 APJL_0307 0fe555e651d599b17487bfefd9cf2bd6 110 ProDom PD065628 PM0975 PRECURSOR HI0310 SIGNAL 41 107 2.0E-26 T 11-10-2018 IPR020493 Uncharacterised protein family HI0310 APJL_1895 01eb21ae4d34b0581d6093da4e382ed3 169 Pfam PF13518 Helix-turn-helix domain 65 118 3.3E-12 T 11-10-2018 APJL_1895 01eb21ae4d34b0581d6093da4e382ed3 169 Pfam PF13518 Helix-turn-helix domain 8 53 6.4E-7 T 11-10-2018 APJL_1895 01eb21ae4d34b0581d6093da4e382ed3 169 SUPERFAMILY SSF46689 1 52 1.54E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1895 01eb21ae4d34b0581d6093da4e382ed3 169 SUPERFAMILY SSF46689 57 161 3.58E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1950 01eb21ae4d34b0581d6093da4e382ed3 169 Pfam PF13518 Helix-turn-helix domain 65 118 3.3E-12 T 11-10-2018 APJL_1950 01eb21ae4d34b0581d6093da4e382ed3 169 Pfam PF13518 Helix-turn-helix domain 8 53 6.4E-7 T 11-10-2018 APJL_1950 01eb21ae4d34b0581d6093da4e382ed3 169 SUPERFAMILY SSF46689 1 52 1.54E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1950 01eb21ae4d34b0581d6093da4e382ed3 169 SUPERFAMILY SSF46689 57 161 3.58E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_2055 b3b54ab56cbb8c2fc530bfc13fd80554 329 Pfam PF05175 Methyltransferase small domain 158 325 3.9E-59 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 APJL_2055 b3b54ab56cbb8c2fc530bfc13fd80554 329 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 2 329 43.709 T 11-10-2018 IPR023543 rRNA small subunit methyltransferase C GO:0008649 APJL_2055 b3b54ab56cbb8c2fc530bfc13fd80554 329 Gene3D G3DSA:3.40.50.150 150 329 2.1E-45 T 11-10-2018 APJL_2055 b3b54ab56cbb8c2fc530bfc13fd80554 329 SUPERFAMILY SSF53335 147 309 6.96E-28 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_2055 b3b54ab56cbb8c2fc530bfc13fd80554 329 Gene3D G3DSA:3.40.50.150 1 149 1.2E-38 T 11-10-2018 APJL_2055 b3b54ab56cbb8c2fc530bfc13fd80554 329 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 258 264 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_2055 b3b54ab56cbb8c2fc530bfc13fd80554 329 Pfam PF08468 Methyltransferase small domain N-terminal 6 153 5.1E-50 T 11-10-2018 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Gene3D G3DSA:3.90.640.50 57 129 2.8E-94 T 11-10-2018 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 34 746 2.3E-205 T 11-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 SMART SM00487 269 479 1.3E-12 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 ProDom PD047574 TYPE I RESTRICTION HYDROLASE DEOXYRIBONUCLEASE SITE-SPECIFIC HSDR ENZYME SYSTEM ENDONUCLEASE 847 879 0.002 T 11-10-2018 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 30 220 1.9E-52 T 11-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Pfam PF04851 Type III restriction enzyme, res subunit 273 440 2.9E-36 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Gene3D G3DSA:3.40.50.300 272 462 5.8E-72 T 11-10-2018 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Gene3D G3DSA:1.20.58.2040 754 892 1.4E-42 T 11-10-2018 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 SUPERFAMILY SSF52540 230 441 3.69E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Gene3D G3DSA:1.10.10.2110 816 844 1.4E-42 T 11-10-2018 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Pfam PF12008 Type I restriction and modification enzyme - subunit R C terminal 750 1038 1.5E-70 T 11-10-2018 IPR022625 Type-1 restriction enzyme R protein, C-terminal APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Gene3D G3DSA:3.40.50.300 463 753 8.0E-100 T 11-10-2018 APJL_0304 3b9a9385ebf99a22dc9ed1f46b97f4cc 1045 Gene3D G3DSA:3.90.1570.50 30 265 2.8E-94 T 11-10-2018 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 27.727 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 2.2E-30 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 Gene3D G3DSA:4.10.520.10 1 98 4.3E-35 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 1.3E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 1.3E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 1.3E-17 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 95 1.0E-39 T 11-10-2018 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 SMART SM00411 3 92 4.5E-40 T 11-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 11-10-2018 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 APJL_0604 e1b71f7e84e7e02b4d2415d70887df40 98 SUPERFAMILY SSF47729 3 95 1.77E-31 T 11-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 APJL_1136 b0dd488c36bdf188117b49a569be0850 101 Hamap MF_00142 Iron-sulfur cluster assembly protein CyaY [cyaY]. 1 101 24.109 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_1136 b0dd488c36bdf188117b49a569be0850 101 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 3 100 4.7E-31 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_1136 b0dd488c36bdf188117b49a569be0850 101 SUPERFAMILY SSF55387 1 96 5.06E-29 T 11-10-2018 APJL_1136 b0dd488c36bdf188117b49a569be0850 101 SMART SM01219 1 100 7.6E-34 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_1136 b0dd488c36bdf188117b49a569be0850 101 Pfam PF01491 Frataxin-like domain 1 95 1.2E-20 T 11-10-2018 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_1136 b0dd488c36bdf188117b49a569be0850 101 ProSitePatterns PS01344 Frataxin family signature. 48 62 - T 11-10-2018 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_1136 b0dd488c36bdf188117b49a569be0850 101 Gene3D G3DSA:3.30.920.10 1 101 6.8E-28 T 11-10-2018 IPR036524 Frataxin/CyaY superfamily GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_1884 604cbce237d94fbb94a5171d634e101e 308 PIRSF PIRSF002936 3 308 5.8E-136 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 APJL_1884 604cbce237d94fbb94a5171d634e101e 308 Gene3D G3DSA:3.40.50.620 10 218 2.5E-53 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1884 604cbce237d94fbb94a5171d634e101e 308 SUPERFAMILY SSF52402 10 216 1.65E-61 T 11-10-2018 APJL_1884 604cbce237d94fbb94a5171d634e101e 308 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 12 308 1.8E-120 T 11-10-2018 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 APJL_1884 604cbce237d94fbb94a5171d634e101e 308 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 32 261 1.6E-44 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 APJL_0923 da5d24d26855e48cdd36c220c97f78ff 225 Gene3D G3DSA:1.10.3720.10 12 222 2.1E-45 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0923 da5d24d26855e48cdd36c220c97f78ff 225 SUPERFAMILY SSF161098 14 209 6.54E-46 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0923 da5d24d26855e48cdd36c220c97f78ff 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 210 2.5E-22 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1417 caf9f8c0c1c44c1492ad5af5e6efad9d 687 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 204 395 1.0E-15 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1417 caf9f8c0c1c44c1492ad5af5e6efad9d 687 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 495 673 6.2E-10 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1417 caf9f8c0c1c44c1492ad5af5e6efad9d 687 Gene3D G3DSA:1.10.3720.10 421 683 2.2E-43 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1417 caf9f8c0c1c44c1492ad5af5e6efad9d 687 Gene3D G3DSA:1.10.3720.10 134 406 1.0E-51 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1417 caf9f8c0c1c44c1492ad5af5e6efad9d 687 SUPERFAMILY SSF161098 429 669 1.64E-42 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1417 caf9f8c0c1c44c1492ad5af5e6efad9d 687 SUPERFAMILY SSF161098 145 392 2.09E-42 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 SUPERFAMILY SSF48019 243 359 2.13E-33 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 356 1.2E-30 T 11-10-2018 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 Gene3D G3DSA:3.40.50.300 13 177 1.1E-100 T 11-10-2018 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 351 3.7E-136 T 11-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 Gene3D G3DSA:1.20.272.10 242 358 2.8E-39 T 11-10-2018 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.1E-44 T 11-10-2018 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 542 680 4.8E-45 T 11-10-2018 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 SUPERFAMILY SSF52540 34 222 4.79E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 Gene3D G3DSA:3.30.300.150 540 665 1.3E-32 T 11-10-2018 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 Gene3D G3DSA:1.10.8.60 8 240 1.1E-100 T 11-10-2018 APJL_0273 bc2471f6e515c6aa6f5689564df9581c 688 SMART SM00382 37 178 1.9E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1085 511e2e2572c9b2798a38095b06d613c6 168 Gene3D G3DSA:1.20.1260.10 1 167 1.7E-49 T 11-10-2018 IPR012347 Ferritin-like APJL_1085 511e2e2572c9b2798a38095b06d613c6 168 SUPERFAMILY SSF47240 4 160 5.0E-57 T 11-10-2018 IPR009078 Ferritin-like superfamily APJL_1085 511e2e2572c9b2798a38095b06d613c6 168 Pfam PF00210 Ferritin-like domain 7 141 6.9E-41 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APJL_1010 99e18ddd0b797f93f55056bf355add4f 376 Gene3D G3DSA:1.10.620.20 2 340 1.5E-145 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 APJL_1010 99e18ddd0b797f93f55056bf355add4f 376 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 11-10-2018 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1010 99e18ddd0b797f93f55056bf355add4f 376 Pfam PF00268 Ribonucleotide reductase, small chain 32 332 2.1E-46 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_1010 99e18ddd0b797f93f55056bf355add4f 376 SUPERFAMILY SSF47240 3 340 4.37E-114 T 11-10-2018 IPR009078 Ferritin-like superfamily APJL_0877 ed3ef356ccbf0ec5ee43d16d3e70b6f2 457 Pfam PF04317 YcjX-like family, DUF463 9 456 2.4E-174 T 11-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein APJL_0877 ed3ef356ccbf0ec5ee43d16d3e70b6f2 457 PIRSF PIRSF019381 1 457 1.8E-186 T 11-10-2018 IPR007413 Protein of unknown function DUF463, YcjX-like protein APJL_0787 033b19f0e511bb3826acc5e565360636 174 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 174 2.9E-61 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 APJL_0787 033b19f0e511bb3826acc5e565360636 174 Pfam PF00436 Single-strand binding protein family 4 108 1.8E-42 T 11-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 APJL_0787 033b19f0e511bb3826acc5e565360636 174 Hamap MF_00984 Single-stranded DNA-binding protein. 4 112 38.52 T 11-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 APJL_0787 033b19f0e511bb3826acc5e565360636 174 SUPERFAMILY SSF50249 3 174 3.32E-60 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0787 033b19f0e511bb3826acc5e565360636 174 Gene3D G3DSA:2.40.50.140 1 119 2.9E-47 T 11-10-2018 APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 Pfam PF03466 LysR substrate binding domain 90 294 1.2E-37 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 SUPERFAMILY SSF53850 90 304 2.5E-38 T 11-10-2018 APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 Gene3D G3DSA:1.10.10.10 1 87 3.5E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 SUPERFAMILY SSF46785 1 113 4.73E-15 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 Gene3D G3DSA:3.40.190.10 93 306 2.5E-85 T 11-10-2018 APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 Gene3D G3DSA:3.40.190.10 167 270 2.5E-85 T 11-10-2018 APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 7.1E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0134 68d4d3f4f0584afed3fa5b0ba6d9e9f6 327 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.2E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 SUPERFAMILY SSF52540 1 353 1.54E-100 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 PIRSF PIRSF000980 1 1109 0.0 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 Gene3D G3DSA:3.40.50.300 343 798 5.6E-160 T 11-10-2018 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 1 797 4.5E-279 T 11-10-2018 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1032 1.8E-304 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 Gene3D G3DSA:1.10.10.990 856 922 5.6E-7 T 11-10-2018 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1070 19.028 T 11-10-2018 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 Gene3D G3DSA:1.10.486.10 451 654 5.6E-160 T 11-10-2018 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 SUPERFAMILY SSF52980 816 1102 2.79E-58 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 Gene3D G3DSA:1.10.10.160 79 210 1.8E-98 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 SUPERFAMILY SSF52540 353 790 2.02E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1927 72d14eb64cdb6f01b35a37a7039b1294 1114 Gene3D G3DSA:3.40.50.10930 4 321 1.8E-98 T 11-10-2018 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 SUPERFAMILY SSF50249 3 123 4.28E-52 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 124 1.0E-70 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 Pfam PF00164 Ribosomal protein S12/S23 13 123 3.1E-42 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.938 T 11-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 1.0E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 1.0E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 1.0E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 1.0E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 1.0E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 1.0E-60 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 PIRSF PIRSF002133 1 124 2.9E-54 T 11-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1426 e75b6e05052f7d92c58a35e0c6a3a07f 124 Gene3D G3DSA:2.40.50.140 1 124 1.7E-63 T 11-10-2018 APJL_0644 ae5622905faec305d3036bae332620d7 874 Pfam PF02272 DHHA1 domain 732 870 3.0E-31 T 11-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 APJL_0644 ae5622905faec305d3036bae332620d7 874 SUPERFAMILY SSF101353 255 464 2.22E-59 T 11-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 APJL_0644 ae5622905faec305d3036bae332620d7 874 Gene3D G3DSA:3.10.310.40 761 872 2.6E-34 T 11-10-2018 APJL_0644 ae5622905faec305d3036bae332620d7 874 Gene3D G3DSA:3.30.930.10 1 251 5.3E-121 T 11-10-2018 APJL_0644 ae5622905faec305d3036bae332620d7 874 Gene3D G3DSA:3.30.980.10 555 694 1.4E-50 T 11-10-2018 APJL_0644 ae5622905faec305d3036bae332620d7 874 SUPERFAMILY SSF55681 3 254 2.49E-107 T 11-10-2018 APJL_0644 ae5622905faec305d3036bae332620d7 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 6 853 0.0 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APJL_0644 ae5622905faec305d3036bae332620d7 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 208 219 1.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APJL_0644 ae5622905faec305d3036bae332620d7 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 281 297 1.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APJL_0644 ae5622905faec305d3036bae332620d7 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 75 86 1.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APJL_0644 ae5622905faec305d3036bae332620d7 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 235 248 1.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APJL_0644 ae5622905faec305d3036bae332620d7 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 305 318 1.8E-32 T 11-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 APJL_0644 ae5622905faec305d3036bae332620d7 874 Gene3D G3DSA:2.40.30.130 461 551 1.0E-9 T 11-10-2018 APJL_0644 ae5622905faec305d3036bae332620d7 874 Gene3D G3DSA:3.30.54.20 623 676 1.4E-50 T 11-10-2018 APJL_0644 ae5622905faec305d3036bae332620d7 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 652 695 2.8E-17 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APJL_0644 ae5622905faec305d3036bae332620d7 874 SUPERFAMILY SSF50447 453 551 9.06E-21 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_0644 ae5622905faec305d3036bae332620d7 874 SUPERFAMILY SSF55186 553 713 9.68E-50 T 11-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 APJL_0644 ae5622905faec305d3036bae332620d7 874 Pfam PF01411 tRNA synthetases class II (A) 6 553 6.1E-231 T 11-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 APJL_0644 ae5622905faec305d3036bae332620d7 874 SMART SM00863 652 695 6.1E-20 T 11-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 APJL_0644 ae5622905faec305d3036bae332620d7 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 202.35 T 11-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 APJL_0582 24c7adb1c5ccfad992b74b8cca68ab28 105 SUPERFAMILY SSF161219 5 90 9.42E-18 T 11-10-2018 IPR037274 Zinc finger, CHY-type superfamily GO:0008270 Reactome: R-HSA-110320|Reactome: R-HSA-983168 APJL_0582 24c7adb1c5ccfad992b74b8cca68ab28 105 PIRSF PIRSF017292 1 105 2.1E-44 T 11-10-2018 IPR016694 Protein of unknown function UCP017292, zinc finger, CHY-type APJL_0582 24c7adb1c5ccfad992b74b8cca68ab28 105 Pfam PF05495 CHY zinc finger 15 88 1.1E-13 T 11-10-2018 IPR008913 Zinc finger, CHY-type GO:0008270 Reactome: R-HSA-110320|Reactome: R-HSA-983168 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SUPERFAMILY SSF48452 14 92 6.33E-14 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SUPERFAMILY SSF48452 243 349 2.11E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Pfam PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase 379 612 3.1E-46 T 11-10-2018 IPR007554 CDP-glycerol glycerophosphotransferase GO:0016020|GO:0047355 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SMART SM00028 250 283 1.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SMART SM00028 43 76 32.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SMART SM00028 285 318 0.48 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SMART SM00028 320 353 45.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SMART SM00028 146 179 0.17 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SMART SM00028 180 213 88.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SMART SM00028 215 248 73.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SMART SM00028 9 42 35.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Gene3D G3DSA:1.25.40.10 282 351 3.3E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Gene3D G3DSA:1.25.40.10 89 177 4.8E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Gene3D G3DSA:3.40.50.11820 352 579 1.0E-62 T 11-10-2018 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Gene3D G3DSA:1.25.40.10 12 88 6.8E-11 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Gene3D G3DSA:1.25.40.10 184 281 3.5E-15 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Pfam PF13181 Tetratricopeptide repeat 183 209 0.2 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Pfam PF13181 Tetratricopeptide repeat 147 177 0.1 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 SUPERFAMILY SSF48452 109 279 1.33E-23 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1611 4e1ca8c34f6dc91cc4dd61dc5f4fc9eb 613 Pfam PF13432 Tetratricopeptide repeat 13 74 3.5E-6 T 11-10-2018 APJL_0314 c3dab9241ad2cffedf718df4ff925dae 146 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 144 1.1E-18 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 APJL_0314 c3dab9241ad2cffedf718df4ff925dae 146 Gene3D G3DSA:3.30.420.270 58 137 1.8E-20 T 11-10-2018 APJL_0314 c3dab9241ad2cffedf718df4ff925dae 146 Hamap MF_02203 Tol-Pal system protein TolR [tolR]. 4 144 26.547 T 11-10-2018 IPR014168 Tol-Pal system protein TolR GO:0015031|GO:0016021 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 Gene3D G3DSA:3.40.50.970 364 567 1.1E-66 T 11-10-2018 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 SUPERFAMILY SSF52467 188 362 1.9E-62 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 431 450 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.8E-44 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 167 3.7E-61 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 394 543 7.1E-50 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 Gene3D G3DSA:3.40.50.970 1 180 9.9E-73 T 11-10-2018 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 SUPERFAMILY SSF52518 372 567 4.34E-69 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 Gene3D G3DSA:3.40.50.1220 190 361 1.3E-60 T 11-10-2018 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 567 6.3E-278 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APJL_0729 e7bb451d1d104ffcb01f4a8b28bef357 574 SUPERFAMILY SSF52518 3 177 1.86E-65 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_1625 66f076055466fe966b6a09bde8038741 129 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 11-10-2018 IPR019823 Large-conductance mechanosensitive channel, conserved site APJL_1625 66f076055466fe966b6a09bde8038741 129 Gene3D G3DSA:1.10.1200.120 3 129 1.1E-35 T 11-10-2018 IPR036019 Gated mechanosensitive channel APJL_1625 66f076055466fe966b6a09bde8038741 129 SUPERFAMILY SSF81330 13 124 6.02E-28 T 11-10-2018 IPR036019 Gated mechanosensitive channel APJL_1625 66f076055466fe966b6a09bde8038741 129 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 128 4.4E-39 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 APJL_1625 66f076055466fe966b6a09bde8038741 129 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 128 1.3E-37 T 11-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L APJL_1625 66f076055466fe966b6a09bde8038741 129 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 129 21.316 T 11-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 APJL_0337 eaf93002962c83c50d42c454da50d332 513 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 513 343.778 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 APJL_0337 eaf93002962c83c50d42c454da50d332 513 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 3 511 1.1E-263 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 APJL_0337 eaf93002962c83c50d42c454da50d332 513 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 4 512 2.3E-263 T 11-10-2018 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 APJL_0757 103bda14a300a5c053e7f63d2600ae20 92 Pfam PF04365 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 5 81 4.2E-19 T 11-10-2018 IPR007460 Ribonuclease toxin, BrnT, of type II toxin-antitoxin system APJL_0757 103bda14a300a5c053e7f63d2600ae20 92 Gene3D G3DSA:3.10.450.530 1 83 5.7E-12 T 11-10-2018 IPR038573 Ribonuclease toxin BrnT superfamily APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 SUPERFAMILY SSF51161 32 318 4.15E-82 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 147 181 3.5E-8 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 112 146 4.2E-10 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 225 256 1.3E-4 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 Gene3D G3DSA:2.160.10.10 102 311 2.1E-62 T 11-10-2018 APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 331 1.9E-116 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 22 90 2.0E-23 T 11-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 Gene3D G3DSA:3.40.1390.10 1 101 7.8E-31 T 11-10-2018 APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 227 255 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APJL_0433 e777c9ee3e7b83fc4a3e3ebd2e58ebb1 341 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 9 328 34.695 T 11-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 APJL_0743 d1f970d181266aa950b302e0dd0b72bf 224 TIGRFAM TIGR00017 cmk: cytidylate kinase 3 217 3.2E-90 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 APJL_0743 d1f970d181266aa950b302e0dd0b72bf 224 Pfam PF02224 Cytidylate kinase 6 219 2.1E-78 T 11-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 APJL_0743 d1f970d181266aa950b302e0dd0b72bf 224 Hamap MF_00238 Cytidylate kinase [cmk]. 4 222 34.246 T 11-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 APJL_0743 d1f970d181266aa950b302e0dd0b72bf 224 Gene3D G3DSA:3.40.50.300 1 224 7.7E-82 T 11-10-2018 APJL_0743 d1f970d181266aa950b302e0dd0b72bf 224 SUPERFAMILY SSF52540 1 221 3.66E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1073 d9ac1283066c7df05e2d04c6e60d15ce 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 360 6.3E-32 T 11-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal APJL_1073 d9ac1283066c7df05e2d04c6e60d15ce 406 SUPERFAMILY SSF53901 213 403 1.69E-62 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_1073 d9ac1283066c7df05e2d04c6e60d15ce 406 Gene3D G3DSA:3.40.47.10 6 258 1.9E-65 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_1073 d9ac1283066c7df05e2d04c6e60d15ce 406 Gene3D G3DSA:3.40.47.10 259 404 1.0E-50 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_1073 d9ac1283066c7df05e2d04c6e60d15ce 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 245 7.3E-45 T 11-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal APJL_1073 d9ac1283066c7df05e2d04c6e60d15ce 406 SMART SM00825 Beta-ketoacyl synthase 4 405 1.9E-14 T 11-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain APJL_1073 d9ac1283066c7df05e2d04c6e60d15ce 406 SUPERFAMILY SSF53901 1 252 1.55E-66 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_1073 d9ac1283066c7df05e2d04c6e60d15ce 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 11-10-2018 IPR018201 Beta-ketoacyl synthase, active site APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 PIRSF PIRSF000110 1 488 8.5E-182 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 9 189 9.6E-60 T 11-10-2018 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 Gene3D G3DSA:3.30.360.10 178 486 6.7E-126 T 11-10-2018 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 5 486 5.4E-207 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 191 485 3.2E-117 T 11-10-2018 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 SUPERFAMILY SSF51735 3 192 2.85E-60 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 Gene3D G3DSA:3.40.50.720 2 177 6.2E-57 T 11-10-2018 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 239 255 2.1E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 221 238 2.1E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 145 158 2.1E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 169 197 2.1E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 330 356 2.1E-49 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 179 185 - T 11-10-2018 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 5 486 90.003 T 11-10-2018 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268 APJL_1324 7ec7bb6f0a47b3bf99b64dd441deb4b3 495 SUPERFAMILY SSF55347 179 486 8.83E-114 T 11-10-2018 APJL_0163 8860da7d175d9f16941ae3146955e33a 201 Gene3D G3DSA:3.40.50.1000 12 195 1.6E-45 T 11-10-2018 IPR023214 HAD superfamily APJL_0163 8860da7d175d9f16941ae3146955e33a 201 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 11 192 7.6E-57 T 11-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase APJL_0163 8860da7d175d9f16941ae3146955e33a 201 SUPERFAMILY SSF56784 11 194 8.01E-44 T 11-10-2018 IPR036412 HAD-like superfamily APJL_0163 8860da7d175d9f16941ae3146955e33a 201 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 128 189 1.1E-12 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_0163 8860da7d175d9f16941ae3146955e33a 201 Gene3D G3DSA:1.10.150.240 24 96 1.6E-45 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APJL_0163 8860da7d175d9f16941ae3146955e33a 201 Pfam PF13419 Haloacid dehalogenase-like hydrolase 14 190 7.6E-25 T 11-10-2018 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 10 426 1.7E-151 T 11-10-2018 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 SUPERFAMILY SSF52540 8 215 1.0E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1883 490c5d10a668e0da75174f412a9c6634 430 Pfam PF00009 Elongation factor Tu GTP binding domain 11 212 2.8E-36 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 SUPERFAMILY SSF50447 230 320 9.77E-18 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_1883 490c5d10a668e0da75174f412a9c6634 430 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APJL_1883 490c5d10a668e0da75174f412a9c6634 430 Gene3D G3DSA:2.40.30.10 229 320 2.7E-20 T 11-10-2018 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 Gene3D G3DSA:2.40.30.10 323 428 3.2E-33 T 11-10-2018 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 SUPERFAMILY SSF50465 325 427 4.8E-30 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APJL_1883 490c5d10a668e0da75174f412a9c6634 430 Gene3D G3DSA:3.40.50.300 2 224 6.2E-60 T 11-10-2018 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 PRINTS PR00315 GTP-binding elongation factor signature 11 24 5.9E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 PRINTS PR00315 GTP-binding elongation factor signature 68 76 5.9E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 PRINTS PR00315 GTP-binding elongation factor signature 104 115 5.9E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 PRINTS PR00315 GTP-binding elongation factor signature 88 98 5.9E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1883 490c5d10a668e0da75174f412a9c6634 430 PRINTS PR00315 GTP-binding elongation factor signature 149 158 5.9E-13 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1782 6af68eb4180c36bb25aa4da75ff0720f 508 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 404 496 5.2E-30 T 11-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain APJL_1782 6af68eb4180c36bb25aa4da75ff0720f 508 SUPERFAMILY SSF54211 8 168 1.18E-30 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_1782 6af68eb4180c36bb25aa4da75ff0720f 508 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 140 5.6E-44 T 11-10-2018 APJL_1782 6af68eb4180c36bb25aa4da75ff0720f 508 Gene3D G3DSA:3.40.50.300 174 503 4.6E-58 T 11-10-2018 APJL_1782 6af68eb4180c36bb25aa4da75ff0720f 508 SMART SM00382 213 393 1.8E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1782 6af68eb4180c36bb25aa4da75ff0720f 508 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 496 4.9E-233 T 11-10-2018 IPR004482 Mg chelatase-related protein APJL_1782 6af68eb4180c36bb25aa4da75ff0720f 508 Pfam PF01078 Magnesium chelatase, subunit ChlI 193 394 3.1E-92 T 11-10-2018 IPR000523 Magnesium chelatase ChlI domain APJL_1782 6af68eb4180c36bb25aa4da75ff0720f 508 SUPERFAMILY SSF52540 191 504 2.77E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1223 59334ff372f11d9b9615d7ceab7ae7b3 236 SUPERFAMILY SSF55729 46 203 1.55E-37 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_1223 59334ff372f11d9b9615d7ceab7ae7b3 236 Pfam PF13302 Acetyltransferase (GNAT) domain 62 179 4.3E-16 T 11-10-2018 IPR000182 GNAT domain APJL_1223 59334ff372f11d9b9615d7ceab7ae7b3 236 Gene3D G3DSA:3.40.630.30 16 236 2.8E-55 T 11-10-2018 APJL_1824 5af9d319aef5f574217aecc4dcb0fa5a 251 PIRSF PIRSF000386 1 251 2.9E-102 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APJL_1824 5af9d319aef5f574217aecc4dcb0fa5a 251 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 225 1.6E-68 T 11-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APJL_1824 5af9d319aef5f574217aecc4dcb0fa5a 251 SUPERFAMILY SSF75217 1 248 1.44E-100 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APJL_1824 5af9d319aef5f574217aecc4dcb0fa5a 251 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 238 5.3E-111 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APJL_1824 5af9d319aef5f574217aecc4dcb0fa5a 251 Gene3D G3DSA:3.40.1280.10 1 169 2.3E-67 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APJL_1824 5af9d319aef5f574217aecc4dcb0fa5a 251 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 251 116.615 T 11-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APJL_1824 5af9d319aef5f574217aecc4dcb0fa5a 251 Gene3D G3DSA:1.10.1270.20 170 251 4.1E-34 T 11-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 PRINTS PR00166 Aromatic amino acid permease signature 17 36 6.6E-66 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 PRINTS PR00166 Aromatic amino acid permease signature 266 285 6.6E-66 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 PRINTS PR00166 Aromatic amino acid permease signature 321 340 6.6E-66 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 PRINTS PR00166 Aromatic amino acid permease signature 129 149 6.6E-66 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 PRINTS PR00166 Aromatic amino acid permease signature 205 224 6.6E-66 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 PRINTS PR00166 Aromatic amino acid permease signature 300 318 6.6E-66 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 PRINTS PR00166 Aromatic amino acid permease signature 167 189 6.6E-66 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 PRINTS PR00166 Aromatic amino acid permease signature 62 82 6.6E-66 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 Pfam PF03222 Tryptophan/tyrosine permease family 1 347 2.1E-112 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 APJL_1441 2f71ab5581537e19a7455e44968473a9 378 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 1 347 1.6E-119 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1198 f4f4a870631d1ec9decf7230e077c09c 370 SUPERFAMILY SSF51604 22 139 3.53E-9 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APJL_1198 f4f4a870631d1ec9decf7230e077c09c 370 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 10 352 1.1E-126 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APJL_1198 f4f4a870631d1ec9decf7230e077c09c 370 PIRSF PIRSF004640 3 365 9.6E-147 T 11-10-2018 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APJL_1198 f4f4a870631d1ec9decf7230e077c09c 370 Gene3D G3DSA:3.30.413.10 263 363 4.7E-23 T 11-10-2018 APJL_1198 f4f4a870631d1ec9decf7230e077c09c 370 Gene3D G3DSA:3.20.20.20 1 262 1.4E-105 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APJL_1198 f4f4a870631d1ec9decf7230e077c09c 370 Pfam PF04551 GcpE protein 14 355 1.8E-131 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APJL_1198 f4f4a870631d1ec9decf7230e077c09c 370 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 8 360 34.621 T 11-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 APJL_1198 f4f4a870631d1ec9decf7230e077c09c 370 SUPERFAMILY SSF56014 266 357 3.53E-12 T 11-10-2018 APJL_0069 157d83549384deb644ac607fa1bc92fc 136 PIRSF PIRSF029598 1 135 1.8E-35 T 11-10-2018 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 APJL_0069 157d83549384deb644ac607fa1bc92fc 136 Pfam PF06146 Phosphate-starvation-inducible E 59 121 2.1E-13 T 11-10-2018 IPR020948 Phosphate-starvation-induced PsiE-like APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 SUPERFAMILY SSF46689 12 97 5.02E-25 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 PIRSF PIRSF002097 1 98 2.6E-43 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 7.3E-30 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 7.3E-30 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 7.3E-30 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 7.3E-30 T 11-10-2018 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 2.3E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 2.3E-13 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 5.8E-16 T 11-10-2018 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 APJL_0191 fbcfa3517399c30b44c64d720f1cb774 98 Gene3D G3DSA:1.10.10.60 1 97 2.4E-32 T 11-10-2018 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 SUPERFAMILY SSF48179 210 341 4.76E-39 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 354 484 7.2E-18 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 341 3.6E-26 T 11-10-2018 IPR000506 Ketol-acid reductoisomerase, C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 368 2.1E-129 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 Gene3D G3DSA:3.40.50.720 1 208 2.1E-82 T 11-10-2018 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 Gene3D G3DSA:1.10.1040.10 209 493 1.1E-115 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 4.8E-56 T 11-10-2018 IPR013116 Ketol-acid reductoisomerase, N-terminal KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 SUPERFAMILY SSF51735 28 209 6.33E-56 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 SUPERFAMILY SSF48179 349 486 7.65E-38 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_1897 a99218a5f95bb705df1bf32c9115b80c 493 Hamap MF_00435 Ketol-acid reductoisomerase (NADP(+)) [ilvC]. 22 487 37.165 T 11-10-2018 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 APJL_1608 692c06fe38b305703db21a3119fc5a0a 501 SUPERFAMILY SSF53756 206 498 1.35E-39 T 11-10-2018 APJL_1608 692c06fe38b305703db21a3119fc5a0a 501 Pfam PF00534 Glycosyl transferases group 1 329 469 4.5E-26 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APJL_1608 692c06fe38b305703db21a3119fc5a0a 501 Gene3D G3DSA:3.40.50.2000 314 480 2.0E-39 T 11-10-2018 APJL_1608 692c06fe38b305703db21a3119fc5a0a 501 Gene3D G3DSA:3.40.50.2000 1 151 7.8E-7 T 11-10-2018 APJL_1608 692c06fe38b305703db21a3119fc5a0a 501 Gene3D G3DSA:3.40.50.2000 213 313 2.0E-39 T 11-10-2018 APJL_1442 836020c54da4d2fa70a6a479a8d9a2a9 97 TIGRFAM TIGR00743 TIGR00743: conserved hypothetical protein 6 97 1.0E-22 T 11-10-2018 IPR005272 Conserved hypothetical protein CHP00743 APJL_1442 836020c54da4d2fa70a6a479a8d9a2a9 97 Gene3D G3DSA:3.30.70.860 26 97 2.4E-16 T 11-10-2018 IPR035571 UPF0234-like, C-terminal APJL_1442 836020c54da4d2fa70a6a479a8d9a2a9 97 Pfam PF04175 Protein of unknown function (DUF406) 6 97 5.9E-29 T 11-10-2018 IPR005272 Conserved hypothetical protein CHP00743 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 Pfam PF03449 Transcription elongation factor, N-terminal 4 74 5.6E-31 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 Gene3D G3DSA:1.10.287.180 1 75 2.5E-32 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 121 137 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 157 6.6E-28 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 156 6.9E-59 T 11-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 SUPERFAMILY SSF46557 3 78 9.42E-29 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 Gene3D G3DSA:3.10.50.30 76 158 2.5E-30 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 SUPERFAMILY SSF54534 81 157 1.23E-23 T 11-10-2018 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 33.48 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 APJL_0954 6f1c1960d1576408d3981e5a6a5e9826 158 PIRSF PIRSF006092 1 158 1.5E-52 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 APJL_0868 e9ac26d6caeb995d99640d443ca027a5 459 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 455 6.8E-219 T 11-10-2018 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 APJL_0868 e9ac26d6caeb995d99640d443ca027a5 459 SUPERFAMILY SSF143548 16 161 6.02E-41 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 APJL_0868 e9ac26d6caeb995d99640d443ca027a5 459 Pfam PF03313 Serine dehydratase alpha chain 187 452 1.3E-97 T 11-10-2018 IPR005130 Serine dehydratase-like, alpha subunit APJL_0868 e9ac26d6caeb995d99640d443ca027a5 459 Gene3D G3DSA:3.30.1330.90 10 163 1.6E-48 T 11-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 APJL_0868 e9ac26d6caeb995d99640d443ca027a5 459 Pfam PF03315 Serine dehydratase beta chain 3 159 2.9E-52 T 11-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 APJL_2013 f7ca5b95b240f2a4561d7af45aca0497 72 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 68 4.0E-20 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 APJL_2013 f7ca5b95b240f2a4561d7af45aca0497 72 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 68 9.7E-31 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 APJL_2013 f7ca5b95b240f2a4561d7af45aca0497 72 Gene3D G3DSA:1.10.10.610 1 71 9.2E-25 T 11-10-2018 IPR036685 YehU-like superfamily APJL_2013 f7ca5b95b240f2a4561d7af45aca0497 72 SUPERFAMILY SSF118001 1 70 1.96E-26 T 11-10-2018 IPR036685 YehU-like superfamily APJL_2013 f7ca5b95b240f2a4561d7af45aca0497 72 PIRSF PIRSF006169 1 72 5.7E-35 T 11-10-2018 IPR010648 Uncharacterised protein family UPF0270 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 SUPERFAMILY SSF54919 1 137 8.77E-55 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 113 121 - T 11-10-2018 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 SMART SM00562 2 138 1.3E-76 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 PRINTS PR01243 Nucleoside diphosphate kinase signature 5 27 1.1E-35 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 PRINTS PR01243 Nucleoside diphosphate kinase signature 49 68 1.1E-35 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 PRINTS PR01243 Nucleoside diphosphate kinase signature 69 86 1.1E-35 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 PRINTS PR01243 Nucleoside diphosphate kinase signature 90 106 1.1E-35 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 PRINTS PR01243 Nucleoside diphosphate kinase signature 113 132 1.1E-35 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 2 137 32.888 T 11-10-2018 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 Gene3D G3DSA:3.30.70.141 1 138 7.5E-56 T 11-10-2018 IPR036850 Nucleoside diphosphate kinase-like domain superfamily KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0367 e3f6d86bef94ff2cd35311147ef19253 138 Pfam PF00334 Nucleoside diphosphate kinase 3 137 1.2E-54 T 11-10-2018 IPR034907 Nucleoside diphosphate kinase-like domain KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|KEGG: 00983+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 APJL_0190 e6f13a0ec6174b8c374ffa02a6310bd9 320 PIRSF PIRSF006621 1 320 3.2E-101 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0190 e6f13a0ec6174b8c374ffa02a6310bd9 320 SUPERFAMILY SSF51395 10 318 3.41E-88 T 11-10-2018 APJL_0190 e6f13a0ec6174b8c374ffa02a6310bd9 320 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 320 48.013 T 11-10-2018 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 APJL_0190 e6f13a0ec6174b8c374ffa02a6310bd9 320 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0190 e6f13a0ec6174b8c374ffa02a6310bd9 320 Pfam PF01207 Dihydrouridine synthase (Dus) 14 318 6.6E-109 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0190 e6f13a0ec6174b8c374ffa02a6310bd9 320 Gene3D G3DSA:1.10.1200.80 251 320 2.4E-6 T 11-10-2018 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 APJL_0190 e6f13a0ec6174b8c374ffa02a6310bd9 320 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 319 1.0E-134 T 11-10-2018 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 APJL_0190 e6f13a0ec6174b8c374ffa02a6310bd9 320 Gene3D G3DSA:3.20.20.70 6 249 5.9E-80 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0865 c9edbbbcc47ffecefb4038ec8bbdf3c3 293 Gene3D G3DSA:3.20.20.220 1 293 1.1E-108 T 11-10-2018 APJL_0865 c9edbbbcc47ffecefb4038ec8bbdf3c3 293 SUPERFAMILY SSF51730 20 292 4.51E-91 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like APJL_0865 c9edbbbcc47ffecefb4038ec8bbdf3c3 293 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 24 288 2.2E-98 T 11-10-2018 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 APJL_0865 c9edbbbcc47ffecefb4038ec8bbdf3c3 293 Pfam PF02219 Methylenetetrahydrofolate reductase 16 289 3.7E-104 T 11-10-2018 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 Pfam PF00009 Elongation factor Tu GTP binding domain 9 274 8.0E-46 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 Gene3D G3DSA:3.40.50.300 69 376 1.7E-116 T 11-10-2018 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 SUPERFAMILY SSF50447 259 390 5.65E-28 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 55 70 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 159 4.7E-18 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 SUPERFAMILY SSF52540 7 274 2.7E-85 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 Gene3D G3DSA:3.30.70.3280 387 526 9.7E-53 T 11-10-2018 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 PRINTS PR00315 GTP-binding elongation factor signature 62 70 9.1E-10 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 PRINTS PR00315 GTP-binding elongation factor signature 12 25 9.1E-10 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 PRINTS PR00315 GTP-binding elongation factor signature 82 92 9.1E-10 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 PRINTS PR00315 GTP-binding elongation factor signature 134 143 9.1E-10 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 Gene3D G3DSA:3.40.50.300 107 272 1.7E-116 T 11-10-2018 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 4 526 0.0 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 SUPERFAMILY SSF54980 390 465 1.65E-17 T 11-10-2018 IPR035647 EF-G domain III/V-like APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 Pfam PF03144 Elongation factor Tu domain 2 311 377 3.6E-10 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 1 524 52.385 T 11-10-2018 IPR004548 Peptide chain release factor 3 GO:0003924|GO:0005737|GO:0006415 APJL_0031 f999b47fab6ca2f65fe1cf2eb8105fd5 526 Pfam PF16658 Class II release factor RF3, C-terminal domain 384 511 1.4E-46 T 11-10-2018 IPR032090 Peptide chain release factor 3, C-terminal APJL_1151 59855ae519c6d4ae4cd8f76c38f77cd3 426 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 212 6.4E-61 T 11-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 APJL_1151 59855ae519c6d4ae4cd8f76c38f77cd3 426 Gene3D G3DSA:3.40.50.11720 33 211 2.4E-44 T 11-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 APJL_1151 59855ae519c6d4ae4cd8f76c38f77cd3 426 Gene3D G3DSA:3.40.50.2000 218 408 1.2E-67 T 11-10-2018 APJL_1151 59855ae519c6d4ae4cd8f76c38f77cd3 426 SUPERFAMILY SSF53756 53 423 1.39E-16 T 11-10-2018 APJL_1151 59855ae519c6d4ae4cd8f76c38f77cd3 426 Pfam PF00534 Glycosyl transferases group 1 249 402 9.1E-13 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APJL_0941 154a893a1fc02c86deea95f0e94dc3a2 408 Gene3D G3DSA:3.40.640.10 18 264 3.4E-165 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0941 154a893a1fc02c86deea95f0e94dc3a2 408 SUPERFAMILY SSF53383 7 394 1.6E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0941 154a893a1fc02c86deea95f0e94dc3a2 408 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 3 399 54.377 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 APJL_0941 154a893a1fc02c86deea95f0e94dc3a2 408 PIRSF PIRSF005572 4 388 2.4E-133 T 11-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 APJL_0941 154a893a1fc02c86deea95f0e94dc3a2 408 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 3 408 7.8E-233 T 11-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 APJL_0941 154a893a1fc02c86deea95f0e94dc3a2 408 Pfam PF00266 Aminotransferase class-V 7 372 1.0E-85 T 11-10-2018 IPR000192 Aminotransferase class V domain APJL_0941 154a893a1fc02c86deea95f0e94dc3a2 408 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 199 218 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APJL_0941 154a893a1fc02c86deea95f0e94dc3a2 408 Gene3D G3DSA:3.90.1150.10 7 380 3.4E-165 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Pfam PF00575 S1 RNA binding domain 618 689 5.0E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 692 30.35 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 241 319 4.0E-22 T 11-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SUPERFAMILY SSF54211 3 143 1.21E-49 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SUPERFAMILY SSF55666 449 548 8.38E-28 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SUPERFAMILY SSF50249 607 691 1.11E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SMART SM00316 619 689 1.9E-25 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SUPERFAMILY SSF54791 551 628 1.8E-16 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SMART SM00322 551 616 3.4E-13 T 11-10-2018 IPR004087 K Homology domain GO:0003676 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SUPERFAMILY SSF54211 297 467 1.06E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 10 690 0.0 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Pfam PF01138 3' exoribonuclease family, domain 1 15 143 5.0E-18 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Pfam PF01138 3' exoribonuclease family, domain 1 323 455 5.4E-22 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Gene3D G3DSA:3.30.230.70 232 548 2.4E-116 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Pfam PF03725 3' exoribonuclease family, domain 2 146 209 3.9E-14 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Pfam PF03725 3' exoribonuclease family, domain 2 459 526 8.8E-6 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 PIRSF PIRSF005499 1 715 1.2E-298 T 11-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SUPERFAMILY SSF46915 238 319 5.49E-18 T 11-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 SUPERFAMILY SSF55666 144 234 9.42E-30 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Gene3D G3DSA:3.30.230.70 1 228 4.8E-79 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Pfam PF00013 KH domain 555 611 9.0E-10 T 11-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Gene3D G3DSA:3.30.1370.10 549 619 1.1E-19 T 11-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 APJL_0570 3500ce0f68eac83845daf442a86e1f10 715 Gene3D G3DSA:2.40.50.140 620 693 7.2E-29 T 11-10-2018 APJL_0242 740aa83ab3627c55f8b6baa8351a5d0a 102 Pfam PF05258 Protein of unknown function (DUF721) 9 93 8.5E-10 T 11-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 APJL_1250 e30039f37f3df9adcd6203ff60d2f389 516 Gene3D G3DSA:3.10.650.10 97 271 1.4E-42 T 11-10-2018 APJL_1250 e30039f37f3df9adcd6203ff60d2f389 516 Gene3D G3DSA:1.20.58.370 7 94 3.5E-27 T 11-10-2018 IPR035277 MalF, N-terminal APJL_1250 e30039f37f3df9adcd6203ff60d2f389 516 Gene3D G3DSA:1.10.3720.10 272 514 3.4E-70 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1250 e30039f37f3df9adcd6203ff60d2f389 516 Gene3D G3DSA:2.40.430.10 117 206 1.4E-42 T 11-10-2018 APJL_1250 e30039f37f3df9adcd6203ff60d2f389 516 SUPERFAMILY SSF160964 13 262 2.35E-76 T 11-10-2018 APJL_1250 e30039f37f3df9adcd6203ff60d2f389 516 SUPERFAMILY SSF161098 263 505 1.44E-58 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1250 e30039f37f3df9adcd6203ff60d2f389 516 Pfam PF14785 Maltose transport system permease protein MalF P2 domain 99 262 5.0E-55 T 11-10-2018 IPR029345 Maltose transport system permease protein MalF, P2 domain APJL_1250 e30039f37f3df9adcd6203ff60d2f389 516 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 299 501 4.5E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1988 34aceb875283ed8788582e8365db5c74 275 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 14 261 38.517 T 11-10-2018 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 APJL_1988 34aceb875283ed8788582e8365db5c74 275 SUPERFAMILY SSF56300 15 273 2.99E-56 T 11-10-2018 APJL_1988 34aceb875283ed8788582e8365db5c74 275 Pfam PF00149 Calcineurin-like phosphoesterase 15 206 2.3E-17 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APJL_1988 34aceb875283ed8788582e8365db5c74 275 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 206 261 2.0E-22 T 11-10-2018 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 APJL_1988 34aceb875283ed8788582e8365db5c74 275 Gene3D G3DSA:3.60.21.10 3 272 3.3E-68 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 214 368 1.4E-23 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 SUPERFAMILY SSF52540 70 370 2.39E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 Pfam PF01926 50S ribosome-binding GTPase 216 334 6.5E-26 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 3 452 32.589 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 Pfam PF10396 GTP-binding protein TrmE N-terminus 4 118 4.1E-33 T 11-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 9 452 2.4E-102 T 11-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 Gene3D G3DSA:1.20.120.430 120 452 5.7E-103 T 11-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 Gene3D G3DSA:3.40.50.300 215 380 5.7E-103 T 11-10-2018 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 Gene3D G3DSA:3.30.1360.120 1 119 2.4E-36 T 11-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 SUPERFAMILY SSF116878 119 452 4.45E-51 T 11-10-2018 APJL_1515 3bf8877f7e95235fc3d099ea5da176f7 452 Pfam PF12631 MnmE helical domain 121 449 3.8E-58 T 11-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Pfam PF09371 Tex-like protein N-terminal domain 12 196 3.7E-69 T 11-10-2018 IPR018974 Tex-like protein, N-terminal APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Gene3D G3DSA:2.40.50.140 638 732 5.9E-30 T 11-10-2018 APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Gene3D G3DSA:1.10.10.650 1 112 2.8E-40 T 11-10-2018 IPR023319 Tex-like protein, HTH domain superfamily APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Pfam PF00575 S1 RNA binding domain 655 727 1.5E-23 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Gene3D G3DSA:3.30.420.140 328 458 5.2E-153 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 SUPERFAMILY SSF47781 477 563 2.67E-27 T 11-10-2018 IPR010994 RuvA domain 2-like APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 SUPERFAMILY SSF158832 5 324 1.18E-120 T 11-10-2018 APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 SUPERFAMILY SSF50249 644 730 1.49E-26 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Gene3D G3DSA:1.10.3500.10 115 505 5.2E-153 T 11-10-2018 IPR023323 Tex-like domain superfamily APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 SMART SM00316 656 727 1.4E-27 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 SMART SM00732 329 431 1.1E-31 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Pfam PF12836 Helix-hairpin-helix motif 498 562 1.6E-27 T 11-10-2018 APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 SUPERFAMILY SSF47781 567 639 2.89E-19 T 11-10-2018 IPR010994 RuvA domain 2-like APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 SUPERFAMILY SSF53098 325 476 1.21E-45 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Pfam PF16921 Tex protein YqgF-like domain 329 458 1.2E-49 T 11-10-2018 IPR032639 Tex protein, YqgF-like domain APJL_1283 4beb7e7d2e930668d8b2d1be5bd23fc5 779 Gene3D G3DSA:1.10.150.310 506 637 3.6E-48 T 11-10-2018 APJL_1631 f56286feac84b7a5dabefa4514b91a38 374 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 16 363 1.2E-134 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1631 f56286feac84b7a5dabefa4514b91a38 374 Pfam PF01098 Cell cycle protein 18 363 1.2E-119 T 11-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1631 f56286feac84b7a5dabefa4514b91a38 374 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 10 365 28.632 T 11-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1631 f56286feac84b7a5dabefa4514b91a38 374 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 320 344 - T 11-10-2018 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0358 385fa433a9ed8ea062579c03792b1f62 194 SUPERFAMILY SSF140478 26 182 1.22E-50 T 11-10-2018 IPR023353 LemA-like domain superfamily APJL_0358 385fa433a9ed8ea062579c03792b1f62 194 Pfam PF04011 LemA family 7 193 2.5E-66 T 11-10-2018 IPR007156 LemA APJL_0358 385fa433a9ed8ea062579c03792b1f62 194 Gene3D G3DSA:1.20.1440.20 16 193 8.1E-62 T 11-10-2018 IPR023353 LemA-like domain superfamily APJL_1769 436d70539bad1c22e0f370892dffc5bd 216 SUPERFAMILY SSF47240 50 189 1.87E-12 T 11-10-2018 IPR009078 Ferritin-like superfamily APJL_1769 436d70539bad1c22e0f370892dffc5bd 216 Gene3D G3DSA:1.20.1260.10 44 216 3.6E-62 T 11-10-2018 IPR012347 Ferritin-like APJL_1769 436d70539bad1c22e0f370892dffc5bd 216 Pfam PF09968 Uncharacterized protein domain (DUF2202) 49 208 4.4E-72 T 11-10-2018 IPR019243 Domain of unknown function DUF2202 APJL_0379 adb96084a777866a300c66653b277c07 128 ProSitePatterns PS00850 Glycine radical domain signature. 98 106 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site APJL_0379 adb96084a777866a300c66653b277c07 128 SUPERFAMILY SSF51998 66 127 9.61E-24 T 11-10-2018 APJL_0379 adb96084a777866a300c66653b277c07 128 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 128 38.458 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA APJL_0379 adb96084a777866a300c66653b277c07 128 Pfam PF01228 Glycine radical 14 109 5.7E-22 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 APJL_0379 adb96084a777866a300c66653b277c07 128 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 128 1.8E-70 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA APJL_0379 adb96084a777866a300c66653b277c07 128 Gene3D G3DSA:3.20.70.20 60 128 4.6E-25 T 11-10-2018 APJL_0379 adb96084a777866a300c66653b277c07 128 PIRSF PIRSF000378 2 128 1.9E-57 T 11-10-2018 IPR011140 Autonomous glycyl radical cofactor GrcA APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 Pfam PF01381 Helix-turn-helix 7 57 1.0E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 TIGRFAM TIGR01526 nadR_NMN_Atrans: nicotinamide-nucleotide adenylyltransferase 64 395 3.1E-148 T 11-10-2018 IPR006417 Nicotinamide-nucleotide adenylyltransferase GO:0000309|GO:0009435 KEGG: 00760+2.7.7.1+2.7.1.22 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 PIRSF PIRSF004776 3 414 1.1E-176 T 11-10-2018 IPR016429 Bifunctional transcriptional regulator NadR GO:0045892 KEGG: 00760+2.7.7.1+2.7.1.22 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 SUPERFAMILY SSF52374 63 224 3.66E-23 T 11-10-2018 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 Pfam PF01467 Cytidylyltransferase-like 68 212 2.0E-4 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 SMART SM00530 6 62 5.3E-5 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 Gene3D G3DSA:3.40.50.300 231 399 1.1E-57 T 11-10-2018 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 Gene3D G3DSA:1.10.260.40 5 61 9.9E-7 T 11-10-2018 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 Gene3D G3DSA:3.40.50.620 62 230 3.2E-49 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 SUPERFAMILY SSF52540 231 402 1.72E-29 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 Pfam PF13521 AAA domain 234 394 5.9E-28 T 11-10-2018 IPR038727 NadR/Ttd14, AAA domain APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 SUPERFAMILY SSF47413 5 57 1.04E-7 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_0047 e509f474e27f7d81938fd16eff4beedb 426 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 65 134 4.8E-18 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APJL_2039 d6f36d575ff0548b7035bce20b97a37d 430 Pfam PF05525 Branched-chain amino acid transport protein 4 425 1.9E-142 T 11-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 APJL_2039 d6f36d575ff0548b7035bce20b97a37d 430 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 11 411 1.3E-126 T 11-10-2018 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 APJL_1591 78081a50a80818c2e0f231396907641c 147 Gene3D G3DSA:3.40.50.360 2 147 3.6E-42 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1591 78081a50a80818c2e0f231396907641c 147 Pfam PF00258 Flavodoxin 7 133 1.9E-25 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 APJL_1591 78081a50a80818c2e0f231396907641c 147 PRINTS PR00369 Flavodoxin signature 107 126 1.5E-6 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APJL_1591 78081a50a80818c2e0f231396907641c 147 PRINTS PR00369 Flavodoxin signature 52 63 1.5E-6 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APJL_1591 78081a50a80818c2e0f231396907641c 147 PRINTS PR00369 Flavodoxin signature 83 93 1.5E-6 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APJL_1591 78081a50a80818c2e0f231396907641c 147 PRINTS PR00369 Flavodoxin signature 6 19 1.5E-6 T 11-10-2018 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 APJL_1591 78081a50a80818c2e0f231396907641c 147 SUPERFAMILY SSF52218 3 147 1.33E-37 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1134 589ed34b2acc32020c9a372602690c5f 136 Pfam PF10008 Uncharacterized protein conserved in bacteria (DUF2251) 19 114 6.1E-42 T 11-10-2018 IPR014449 Uncharacterised conserved protein UCP007050, HI0931 APJL_1134 589ed34b2acc32020c9a372602690c5f 136 PIRSF PIRSF007050 1 136 5.5E-37 T 11-10-2018 IPR014449 Uncharacterised conserved protein UCP007050, HI0931 APJL_0943 81ad38e264b6209a374fa033519bd82c 463 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 16 463 5.2E-118 T 11-10-2018 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) APJL_0943 81ad38e264b6209a374fa033519bd82c 463 SUPERFAMILY SSF56935 26 463 1.14E-94 T 11-10-2018 APJL_0943 81ad38e264b6209a374fa033519bd82c 463 Gene3D G3DSA:2.40.160.60 26 463 6.8E-125 T 11-10-2018 APJL_1519 231605f1e3004b6f24174e776b0db969 189 Gene3D G3DSA:1.20.1260.10 24 189 1.6E-41 T 11-10-2018 IPR012347 Ferritin-like APJL_1519 231605f1e3004b6f24174e776b0db969 189 PIRSF PIRSF005900 22 188 9.5E-48 T 11-10-2018 IPR002177 DNA-binding protein Dps APJL_1519 231605f1e3004b6f24174e776b0db969 189 ProSitePatterns PS00819 Dps protein family signature 2. 91 105 - T 11-10-2018 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 APJL_1519 231605f1e3004b6f24174e776b0db969 189 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 89 105 9.1E-13 T 11-10-2018 IPR002177 DNA-binding protein Dps APJL_1519 231605f1e3004b6f24174e776b0db969 189 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 160 178 9.1E-13 T 11-10-2018 IPR002177 DNA-binding protein Dps APJL_1519 231605f1e3004b6f24174e776b0db969 189 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 65 81 9.1E-13 T 11-10-2018 IPR002177 DNA-binding protein Dps APJL_1519 231605f1e3004b6f24174e776b0db969 189 Pfam PF00210 Ferritin-like domain 45 184 4.3E-23 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APJL_1519 231605f1e3004b6f24174e776b0db969 189 SUPERFAMILY SSF47240 26 182 1.3E-42 T 11-10-2018 IPR009078 Ferritin-like superfamily APJL_0636 74fbe851c7c929a178805d9b0decf901 402 TIGRFAM TIGR00016 ackA: acetate kinase 1 401 4.6E-179 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 Gene3D G3DSA:3.30.420.40 197 402 2.2E-78 T 11-10-2018 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 Pfam PF00871 Acetokinase family 5 395 8.9E-171 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 Gene3D G3DSA:3.30.420.40 3 195 2.0E-71 T 11-10-2018 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 PIRSF PIRSF000722 2 402 3.0E-140 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 Hamap MF_00020 Acetate kinase [ackA]. 1 402 178.787 T 11-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 PRINTS PR00471 Acetate kinase family signature 6 17 1.2E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 PRINTS PR00471 Acetate kinase family signature 174 187 1.2E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 PRINTS PR00471 Acetate kinase family signature 204 225 1.2E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 PRINTS PR00471 Acetate kinase family signature 382 394 1.2E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 PRINTS PR00471 Acetate kinase family signature 302 315 1.2E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 PRINTS PR00471 Acetate kinase family signature 326 342 1.2E-45 T 11-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 SUPERFAMILY SSF53067 158 400 1.1E-82 T 11-10-2018 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 6 17 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 SUPERFAMILY SSF53067 5 197 5.61E-62 T 11-10-2018 APJL_0636 74fbe851c7c929a178805d9b0decf901 402 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 204 221 - T 11-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 APJL_0270 41227627a3c4ed75c60323f85675a466 252 SUPERFAMILY SSF53850 23 250 2.54E-63 T 11-10-2018 APJL_0270 41227627a3c4ed75c60323f85675a466 252 Gene3D G3DSA:3.40.190.10 104 214 3.4E-74 T 11-10-2018 APJL_0270 41227627a3c4ed75c60323f85675a466 252 PIRSF PIRSF004846 3 252 6.9E-68 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 APJL_0270 41227627a3c4ed75c60323f85675a466 252 Gene3D G3DSA:3.40.190.10 27 248 3.4E-74 T 11-10-2018 APJL_0270 41227627a3c4ed75c60323f85675a466 252 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 30 245 1.7E-63 T 11-10-2018 IPR005950 Molybdate ABC transporter, substrate-binding protein GO:0015689 APJL_0270 41227627a3c4ed75c60323f85675a466 252 Pfam PF13531 Bacterial extracellular solute-binding protein 25 248 4.6E-46 T 11-10-2018 APJL_0922 e9b9788099bb0d0e8c1ee9fbef4759ad 273 Gene3D G3DSA:3.40.190.10 119 223 2.0E-83 T 11-10-2018 APJL_0922 e9b9788099bb0d0e8c1ee9fbef4759ad 273 SUPERFAMILY SSF53850 36 273 3.16E-75 T 11-10-2018 APJL_0922 e9b9788099bb0d0e8c1ee9fbef4759ad 273 PIRSF PIRSF002854 1 273 7.2E-95 T 11-10-2018 IPR004872 Lipoprotein NlpA family APJL_0922 e9b9788099bb0d0e8c1ee9fbef4759ad 273 Gene3D G3DSA:3.40.190.10 37 257 2.0E-83 T 11-10-2018 APJL_0922 e9b9788099bb0d0e8c1ee9fbef4759ad 273 Pfam PF03180 NLPA lipoprotein 37 273 8.4E-92 T 11-10-2018 IPR004872 Lipoprotein NlpA family APJL_0922 e9b9788099bb0d0e8c1ee9fbef4759ad 273 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 11 273 4.3E-126 T 11-10-2018 IPR004872 Lipoprotein NlpA family APJL_1455 0569ecbcb898353ba12a067a04e8fb14 141 Pfam PF03061 Thioesterase superfamily 51 129 3.7E-15 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APJL_1455 0569ecbcb898353ba12a067a04e8fb14 141 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 135 1.3E-35 T 11-10-2018 IPR003736 Phenylacetic acid degradation-related domain Reactome: R-HSA-77289 APJL_1455 0569ecbcb898353ba12a067a04e8fb14 141 Gene3D G3DSA:3.10.129.10 1 141 3.0E-48 T 11-10-2018 APJL_1455 0569ecbcb898353ba12a067a04e8fb14 141 SUPERFAMILY SSF54637 4 132 5.65E-29 T 11-10-2018 IPR029069 HotDog domain superfamily APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 1.1E-263 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 Gene3D G3DSA:2.60.34.10 378 519 2.2E-50 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 Gene3D G3DSA:3.90.640.10 238 310 4.4E-116 T 11-10-2018 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 SUPERFAMILY SSF53067 19 196 1.22E-54 T 11-10-2018 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 331 345 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 45.554 T 11-10-2018 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 SUPERFAMILY SSF53067 200 376 6.48E-49 T 11-10-2018 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 SUPERFAMILY SSF100934 503 615 1.45E-32 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 Gene3D G3DSA:3.30.420.40 194 360 4.4E-116 T 11-10-2018 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 SUPERFAMILY SSF100920 383 536 1.83E-51 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 Pfam PF00012 Hsp70 protein 21 599 2.7E-192 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 Gene3D G3DSA:3.30.420.40 22 373 4.4E-116 T 11-10-2018 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 Gene3D G3DSA:1.20.1270.10 520 615 2.4E-25 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 PRINTS PR00301 70kDa heat shock protein signature 20 33 3.0E-53 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 PRINTS PR00301 70kDa heat shock protein signature 465 481 3.0E-53 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 PRINTS PR00301 70kDa heat shock protein signature 359 379 3.0E-53 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 PRINTS PR00301 70kDa heat shock protein signature 211 221 3.0E-53 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 PRINTS PR00301 70kDa heat shock protein signature 384 403 3.0E-53 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 PRINTS PR00301 70kDa heat shock protein signature 152 172 3.0E-53 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_0935 7eec88909a8fa57220c66fd1d1bbdc5d 617 PRINTS PR00301 70kDa heat shock protein signature 328 344 3.0E-53 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 11 499 1.8E-224 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 17 500 44.451 T 11-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 SUPERFAMILY SSF50249 9 150 4.93E-45 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 Gene3D G3DSA:3.30.930.10 151 495 8.7E-129 T 11-10-2018 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 Pfam PF00152 tRNA synthetases class II (D, K and N) 158 497 1.9E-79 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 PIRSF PIRSF039101 2 500 3.2E-198 T 11-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 195 205 5.2E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 382 398 5.2E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 211 227 5.2E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 240 253 5.2E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 258 275 5.2E-38 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 SUPERFAMILY SSF55681 158 498 9.36E-122 T 11-10-2018 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 Gene3D G3DSA:2.40.50.140 12 150 1.5E-42 T 11-10-2018 APJL_0815 119f21fc496c9bcc457a4ec3eaa4bf92 500 Pfam PF01336 OB-fold nucleic acid binding domain 64 142 1.7E-14 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 Gene3D G3DSA:2.40.128.240 350 434 3.6E-27 T 11-10-2018 IPR038197 TbpB, C-lobe handle domain superfamily APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 SUPERFAMILY SSF56925 400 564 8.63E-28 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 Gene3D G3DSA:2.40.128.250 69 182 2.7E-27 T 11-10-2018 IPR038669 TbpB, N-lobe handle domain superfamily APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 Pfam PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B 187 341 2.0E-36 T 11-10-2018 IPR001677 Transferrin-binding protein, C-lobe/N-lobe beta barrel domain APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 Pfam PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B 437 564 5.6E-22 T 11-10-2018 IPR001677 Transferrin-binding protein, C-lobe/N-lobe beta barrel domain APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 Gene3D G3DSA:2.40.160.90 183 349 1.6E-49 T 11-10-2018 APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 SUPERFAMILY SSF56925 163 341 1.33E-30 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 Pfam PF17483 C-lobe handle domain of Tf-binding protein B 349 432 1.1E-21 T 11-10-2018 IPR035316 Transferrin-binding protein B, C-lobe handle domain APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 Pfam PF17484 N-Lobe handle Tf-binding protein B 49 184 2.6E-38 T 11-10-2018 IPR035313 Transferrin-binding protein B, N-lobe handle APJL_0250 b620bae2edd7769f767bfb91e1555d76 569 Gene3D G3DSA:2.40.160.90 435 568 1.0E-26 T 11-10-2018 APJL_0033 865c712ebf96b02d8ff0bc53a25092ef 171 Pfam PF05656 Protein of unknown function (DUF805) 12 156 2.0E-28 T 11-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 APJL_1817 6817b7180351fd53e84f81a4488fa329 118 SUPERFAMILY SSF46946 2 114 2.74E-45 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 APJL_1817 6817b7180351fd53e84f81a4488fa329 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 27.083 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1817 6817b7180351fd53e84f81a4488fa329 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 11-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1817 6817b7180351fd53e84f81a4488fa329 118 Gene3D G3DSA:1.10.8.50 1 71 3.1E-28 T 11-10-2018 APJL_1817 6817b7180351fd53e84f81a4488fa329 118 Gene3D G3DSA:4.10.910.10 72 118 3.5E-25 T 11-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1817 6817b7180351fd53e84f81a4488fa329 118 PIRSF PIRSF002134 1 118 7.1E-42 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1817 6817b7180351fd53e84f81a4488fa329 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 3.2E-53 T 11-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1817 6817b7180351fd53e84f81a4488fa329 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 7.0E-32 T 11-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_0886 d29bb15ad2c46d7eaeb4f5f9603491af 341 Gene3D G3DSA:3.40.50.300 1 139 1.4E-36 T 11-10-2018 APJL_0886 d29bb15ad2c46d7eaeb4f5f9603491af 341 Gene3D G3DSA:1.10.8.60 142 212 4.9E-21 T 11-10-2018 APJL_0886 d29bb15ad2c46d7eaeb4f5f9603491af 341 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 213 337 2.6E-27 T 11-10-2018 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_0886 d29bb15ad2c46d7eaeb4f5f9603491af 341 SUPERFAMILY SSF52540 1 208 6.64E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0886 d29bb15ad2c46d7eaeb4f5f9603491af 341 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 17 338 7.9E-98 T 11-10-2018 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 APJL_0886 d29bb15ad2c46d7eaeb4f5f9603491af 341 Pfam PF06144 DNA polymerase III, delta subunit 21 189 1.9E-39 T 11-10-2018 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 APJL_0886 d29bb15ad2c46d7eaeb4f5f9603491af 341 SUPERFAMILY SSF48019 211 338 8.16E-30 T 11-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 APJL_0886 d29bb15ad2c46d7eaeb4f5f9603491af 341 Gene3D G3DSA:1.20.272.10 213 341 4.5E-41 T 11-10-2018 APJL_1312 32ff4eb915254a92f9880a77acac58b5 707 Gene3D G3DSA:2.170.130.10 37 148 5.3E-33 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APJL_1312 32ff4eb915254a92f9880a77acac58b5 707 SUPERFAMILY SSF56935 45 707 2.17E-80 T 11-10-2018 APJL_1312 32ff4eb915254a92f9880a77acac58b5 707 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 690 707 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APJL_1312 32ff4eb915254a92f9880a77acac58b5 707 Pfam PF07715 TonB-dependent Receptor Plug Domain 42 142 1.1E-12 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APJL_1312 32ff4eb915254a92f9880a77acac58b5 707 Pfam PF00593 TonB dependent receptor 288 706 4.1E-38 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APJL_0800 06ddebe7c90dae8288142d3a1178d8c2 295 Gene3D G3DSA:1.10.3720.10 85 293 1.1E-14 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0800 06ddebe7c90dae8288142d3a1178d8c2 295 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 15 66 9.6E-8 T 11-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain APJL_0800 06ddebe7c90dae8288142d3a1178d8c2 295 SUPERFAMILY SSF161098 89 276 6.0E-18 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0800 06ddebe7c90dae8288142d3a1178d8c2 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 291 3.4E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0962 4676ebaa80ee5477e2de6be35f3bf5f2 102 SUPERFAMILY SSF47413 2 56 6.76E-11 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_0962 4676ebaa80ee5477e2de6be35f3bf5f2 102 SMART SM00530 1 51 2.1E-4 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_0962 4676ebaa80ee5477e2de6be35f3bf5f2 102 Gene3D G3DSA:1.10.260.40 1 83 1.7E-12 T 11-10-2018 APJL_0962 4676ebaa80ee5477e2de6be35f3bf5f2 102 Pfam PF01381 Helix-turn-helix 4 51 1.0E-10 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 TIGRFAM TIGR03145 cyt_nit_nrfE: cytochrome c nitrate reductase biogenesis protein NrfE 1 626 8.4E-292 T 11-10-2018 IPR017563 Cytochrome c nitrate reductase biogenesis protein NrfE APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 Pfam PF01578 Cytochrome C assembly protein 89 295 1.1E-49 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 394 413 2.9E-22 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 2.9E-22 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 2.9E-22 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 315 330 2.9E-22 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 351 368 2.9E-22 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 189 204 2.9E-22 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 323 626 9.1E-74 T 11-10-2018 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 631 1.1E-226 T 11-10-2018 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 274 294 2.2E-84 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 244 264 2.2E-84 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 210 236 2.2E-84 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 294 310 2.2E-84 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 310 329 2.2E-84 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.2E-84 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.2E-84 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1070 b7f7d671d3a58a028d6369b6bebcbf10 638 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 159 181 2.2E-84 T 11-10-2018 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_0783 36490ac22639e3aed049337fe632724e 119 Pfam PF03788 LrgA family 22 111 4.2E-22 T 11-10-2018 IPR005538 LrgA/CidA family GO:0016021 APJL_0522 60f769221ff7fae423068f3f29cd6501 174 Gene3D G3DSA:3.40.50.300 3 166 4.0E-36 T 11-10-2018 APJL_0522 60f769221ff7fae423068f3f29cd6501 174 Pfam PF00005 ABC transporter 17 83 1.0E-12 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0522 60f769221ff7fae423068f3f29cd6501 174 SUPERFAMILY SSF52540 7 130 1.89E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 Gene3D G3DSA:3.30.70.1660 86 314 8.7E-98 T 11-10-2018 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 Pfam PF03462 PCRF domain 1 176 1.4E-72 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 1 330 38.152 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 SMART SM00937 36 151 3.8E-64 T 11-10-2018 IPR005139 Peptide chain release factor GO:0006415 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 Pfam PF00472 RF-1 domain 189 294 1.0E-41 T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 Gene3D G3DSA:1.20.58.410 1 75 2.7E-5 T 11-10-2018 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 SUPERFAMILY SSF75620 2 326 1.06E-136 T 11-10-2018 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 331 1.3E-167 T 11-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 Gene3D G3DSA:3.30.160.20 183 264 8.7E-98 T 11-10-2018 APJL_2095 b5c2a0b639a5116c33339c6a33842ae1 333 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 201 217 - T 11-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 APJL_1261 dfa6fed2af8b6adda72274bd254cf43a 358 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 100 111 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APJL_1261 dfa6fed2af8b6adda72274bd254cf43a 358 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 357 1.3E-176 T 11-10-2018 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 APJL_1261 dfa6fed2af8b6adda72274bd254cf43a 358 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 13 357 3.3E-114 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APJL_1261 dfa6fed2af8b6adda72274bd254cf43a 358 Gene3D G3DSA:3.20.20.70 2 358 4.8E-144 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1261 dfa6fed2af8b6adda72274bd254cf43a 358 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 171 182 - T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APJL_1261 dfa6fed2af8b6adda72274bd254cf43a 358 SUPERFAMILY SSF51569 1 356 2.56E-130 T 11-10-2018 APJL_1261 dfa6fed2af8b6adda72274bd254cf43a 358 PIRSF PIRSF001359 12 358 2.2E-91 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APJL_1261 dfa6fed2af8b6adda72274bd254cf43a 358 Pfam PF01116 Fructose-bisphosphate aldolase class-II 16 356 1.8E-91 T 11-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 APJL_1367 741538f7b6f159f4bce3a138bc66ecb5 170 Gene3D G3DSA:2.30.110.10 6 169 1.2E-40 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APJL_1367 741538f7b6f159f4bce3a138bc66ecb5 170 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 17 168 8.8E-77 T 11-10-2018 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 KEGG: 00740+1.5.1.36 APJL_1367 741538f7b6f159f4bce3a138bc66ecb5 170 SUPERFAMILY SSF50475 16 166 6.14E-43 T 11-10-2018 APJL_1367 741538f7b6f159f4bce3a138bc66ecb5 170 Pfam PF01613 Flavin reductase like domain 21 168 5.3E-32 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APJL_1367 741538f7b6f159f4bce3a138bc66ecb5 170 SMART SM00903 21 167 2.7E-48 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 SUPERFAMILY SSF52518 1 172 9.76E-63 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 321 8.9E-42 T 11-10-2018 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 SUPERFAMILY SSF52518 353 546 2.14E-62 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 168 1.2E-57 T 11-10-2018 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 413 432 - T 11-10-2018 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 547 3.3E-207 T 11-10-2018 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 376 524 8.0E-44 T 11-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 Gene3D G3DSA:3.40.50.1220 180 340 8.3E-52 T 11-10-2018 APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 SUPERFAMILY SSF52467 182 341 8.73E-57 T 11-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 Gene3D G3DSA:3.40.50.970 1 179 3.9E-67 T 11-10-2018 APJL_0099 3c1d5bf8de1611dc9dd7a80d449338a6 550 Gene3D G3DSA:3.40.50.970 344 549 5.4E-63 T 11-10-2018 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 Gene3D G3DSA:3.20.20.150 2 439 4.8E-182 T 11-10-2018 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 TIGRFAM TIGR02630 xylose_isom_A: xylose isomerase 4 437 1.7E-214 T 11-10-2018 IPR013452 Xylose isomerase, bacterial-type GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 Hamap MF_00455 Xylose isomerase [xylA]. 11 437 52.906 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 SUPERFAMILY SSF51658 3 438 4.15E-178 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 271 298 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 133 153 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 156 175 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 180 201 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 92 114 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 207 226 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 333 344 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 300 311 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_1955 a8654c83864a60b6bb4f1013b5036e4d 439 PRINTS PR00688 Xylose isomerase signature 229 253 7.4E-86 T 11-10-2018 IPR001998 Xylose isomerase GO:0005975|GO:0009045 KEGG: 00040+5.3.1.5|KEGG: 00051+5.3.1.5 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 Pfam PF00224 Pyruvate kinase, barrel domain 2 311 4.0E-117 T 11-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 444 2.2E-155 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 Gene3D G3DSA:3.20.20.60 2 308 9.1E-141 T 11-10-2018 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 PRINTS PR01050 Pyruvate kinase family signature 286 302 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 PRINTS PR01050 Pyruvate kinase family signature 157 171 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 PRINTS PR01050 Pyruvate kinase family signature 242 266 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 PRINTS PR01050 Pyruvate kinase family signature 30 46 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 PRINTS PR01050 Pyruvate kinase family signature 217 241 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 PRINTS PR01050 Pyruvate kinase family signature 190 216 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 PRINTS PR01050 Pyruvate kinase family signature 267 285 6.3E-52 T 11-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 Gene3D G3DSA:3.40.1380.20 309 439 9.1E-141 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 Gene3D G3DSA:2.40.33.10 41 139 9.1E-141 T 11-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 Pfam PF02887 Pyruvate kinase, alpha/beta domain 330 442 6.7E-28 T 11-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 ProSitePatterns PS00110 Pyruvate kinase active site signature. 185 197 - T 11-10-2018 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 SUPERFAMILY SSF50800 41 136 1.22E-24 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 SUPERFAMILY SSF52935 296 445 9.81E-37 T 11-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 APJL_0188 d8235dfd000a2e43600aac42f0c35352 446 SUPERFAMILY SSF51621 2 311 6.28E-76 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 SUPERFAMILY SSF53790 211 456 6.28E-79 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Gene3D G3DSA:3.40.50.720 1 112 8.3E-34 T 11-10-2018 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 PIRSF PIRSF036426 1 466 2.5E-199 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 1.3E-7 T 11-10-2018 IPR028281 Siroheme synthase, central domain KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 449 2.4E-91 T 11-10-2018 IPR006366 Uroporphyrin-III C-methyltransferase GO:0008168|GO:0019354 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Gene3D G3DSA:3.40.1010.10 214 331 3.2E-43 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Gene3D G3DSA:3.30.160.110 113 148 1.6E-18 T 11-10-2018 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 221 235 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Pfam PF10414 Sirohaem synthase dimerisation region 150 208 2.3E-16 T 11-10-2018 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Hamap MF_01646 Siroheme synthase [cysG]. 1 458 51.278 T 11-10-2018 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 SUPERFAMILY SSF51735 1 113 2.44E-24 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1886 6f39d0a3090117cc5a496ef666687719 486 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 11-10-2018 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 SUPERFAMILY SSF75615 114 204 2.49E-26 T 11-10-2018 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 208 9.2E-79 T 11-10-2018 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Pfam PF13241 Putative NAD(P)-binding 6 115 2.9E-28 T 11-10-2018 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Gene3D G3DSA:1.10.8.210 149 211 1.0E-11 T 11-10-2018 IPR037115 Sirohaem synthase, dimerisation domain superfamily GO:0006779|GO:0055114 KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5196|MetaCyc: PWY-7377 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 428 2.2E-51 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 APJL_1886 6f39d0a3090117cc5a496ef666687719 486 Gene3D G3DSA:3.30.950.10 332 473 1.3E-44 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Gene3D G3DSA:3.40.50.740 94 622 0.0 T 11-10-2018 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Hamap MF_01630 Periplasmic nitrate reductase [napA]. 1 827 30.934 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 SMART SM00926 37 91 7.6E-14 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Gene3D G3DSA:3.40.228.10 173 701 0.0 T 11-10-2018 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 SUPERFAMILY SSF53706 36 641 8.11E-200 T 11-10-2018 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 42 59 - T 11-10-2018 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 22 1.7E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Pfam PF01568 Molydopterin dinucleotide binding domain 713 821 5.0E-25 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 TIGRFAM TIGR01706 NAPA: periplasmic nitrate reductase, large subunit 3 827 0.0 T 11-10-2018 IPR010051 Periplasmic nitrate reductase, large subunit GO:0008940|GO:0030151|GO:0042597|GO:0055114 KEGG: 00910+1.9.6.1|MetaCyc: PWY-5674 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 SUPERFAMILY SSF50692 686 827 2.49E-40 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Pfam PF00384 Molybdopterin oxidoreductase 94 566 4.2E-87 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 3 24 1.3E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Gene3D G3DSA:3.30.200.210 37 665 0.0 T 11-10-2018 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Gene3D G3DSA:2.40.40.20 704 827 2.3E-44 T 11-10-2018 APJL_1461 5b76ac42ae01172e71991354953e7d04 827 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 38 90 6.6E-17 T 11-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 262 1.2E-56 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 SUPERFAMILY SSF51735 1 337 2.93E-93 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 Gene3D G3DSA:3.90.25.10 194 329 3.2E-137 T 11-10-2018 APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 335 6.3E-138 T 11-10-2018 IPR005886 UDP-glucose 4-epimerase GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|Reactome: R-HSA-5609977|Reactome: R-HSA-70370 APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 Gene3D G3DSA:3.40.50.720 3 274 3.2E-137 T 11-10-2018 APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 4.0E-5 T 11-10-2018 APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 PRINTS PR01713 Nucleotide sugar epimerase signature 231 246 4.0E-5 T 11-10-2018 APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 PRINTS PR01713 Nucleotide sugar epimerase signature 256 271 4.0E-5 T 11-10-2018 APJL_1314 a1b176a71ebc314ceb8936eb4a6c3f67 338 PRINTS PR01713 Nucleotide sugar epimerase signature 295 312 4.0E-5 T 11-10-2018 APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 80 132 2.3E-19 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 81 109 - T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 Gene3D G3DSA:1.20.5.1030 76 133 1.3E-15 T 11-10-2018 IPR038379 SecE superfamily APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 Hamap MF_00422 Protein translocase subunit SecE [secE]. 76 131 13.019 T 11-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 80 132 1.4E-18 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 PRINTS PR01650 Bacterial translocase SecE signature 75 95 2.8E-30 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 PRINTS PR01650 Bacterial translocase SecE signature 54 75 2.8E-30 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 PRINTS PR01650 Bacterial translocase SecE signature 119 135 2.8E-30 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APJL_1749 b0bdd7b69dde3ecf42f91ea8756cc910 137 PRINTS PR01650 Bacterial translocase SecE signature 99 119 2.8E-30 T 11-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 APJL_1294 2545ba2aed6d2d2b0f25f30fd64f81f9 257 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 8 246 5.5E-89 T 11-10-2018 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1294 2545ba2aed6d2d2b0f25f30fd64f81f9 257 SUPERFAMILY SSF53098 8 185 8.35E-53 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1294 2545ba2aed6d2d2b0f25f30fd64f81f9 257 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 8 202 1.3E-76 T 11-10-2018 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 APJL_1294 2545ba2aed6d2d2b0f25f30fd64f81f9 257 SMART SM00479 8 185 3.4E-48 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APJL_1294 2545ba2aed6d2d2b0f25f30fd64f81f9 257 Gene3D G3DSA:3.30.420.10 3 186 7.7E-56 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1294 2545ba2aed6d2d2b0f25f30fd64f81f9 257 Pfam PF00929 Exonuclease 10 176 9.7E-38 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APJL_1823 d05ed490f62087f74f94f7b5d25361c7 175 Gene3D G3DSA:2.30.30.240 94 175 3.8E-35 T 11-10-2018 APJL_1823 d05ed490f62087f74f94f7b5d25361c7 175 Pfam PF05239 PRC-barrel domain 97 170 2.2E-8 T 11-10-2018 IPR027275 PRC-barrel domain APJL_1823 d05ed490f62087f74f94f7b5d25361c7 175 SUPERFAMILY SSF50447 8 93 3.88E-24 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_1823 d05ed490f62087f74f94f7b5d25361c7 175 SUPERFAMILY SSF50346 99 175 3.34E-21 T 11-10-2018 IPR011033 PRC-barrel-like superfamily APJL_1823 d05ed490f62087f74f94f7b5d25361c7 175 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 8 175 9.7E-56 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 APJL_1823 d05ed490f62087f74f94f7b5d25361c7 175 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 6 175 24.19 T 11-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 APJL_1823 d05ed490f62087f74f94f7b5d25361c7 175 Pfam PF01782 RimM N-terminal domain 8 87 3.8E-25 T 11-10-2018 IPR002676 RimM, N-terminal GO:0006364 APJL_1823 d05ed490f62087f74f94f7b5d25361c7 175 Gene3D G3DSA:2.40.30.60 1 93 1.1E-29 T 11-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 APJL_2033 a46a28424e2fd3e5dec00339553ad4f0 76 Pfam PF02416 mttA/Hcf106 family 4 62 3.2E-13 T 11-10-2018 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 APJL_2033 a46a28424e2fd3e5dec00339553ad4f0 76 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 3.1E-21 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 APJL_2033 a46a28424e2fd3e5dec00339553ad4f0 76 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 75 23.9 T 11-10-2018 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 APJL_1901 5766755e05b6e4e54f575c4619a640fa 104 Pfam PF00403 Heavy-metal-associated domain 41 100 2.5E-9 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APJL_1901 5766755e05b6e4e54f575c4619a640fa 104 SUPERFAMILY SSF55008 35 102 1.26E-15 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 APJL_1901 5766755e05b6e4e54f575c4619a640fa 104 Gene3D G3DSA:3.30.70.100 34 104 3.9E-15 T 11-10-2018 APJL_1732 a230e643d8a98507a806261b76a8a6b7 593 SUPERFAMILY SSF52794 499 591 4.97E-16 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 APJL_1732 a230e643d8a98507a806261b76a8a6b7 593 PIRSF PIRSF037343 1 593 1.0E-296 T 11-10-2018 IPR017180 Phosphotransferase system component IIBC, sugar-specific, predicted APJL_1732 a230e643d8a98507a806261b76a8a6b7 593 Gene3D G3DSA:3.40.50.2300 500 590 6.9E-20 T 11-10-2018 APJL_1732 a230e643d8a98507a806261b76a8a6b7 593 Pfam PF03611 PTS system sugar-specific permease component 6 416 4.8E-125 T 11-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 APJL_1732 a230e643d8a98507a806261b76a8a6b7 593 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 501 577 1.0E-12 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 APJL_1316 067ceb21a10cc307b89973085632bb37 336 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 207 331 3.0E-53 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 APJL_1316 067ceb21a10cc307b89973085632bb37 336 SUPERFAMILY SSF64383 205 335 3.66E-41 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 APJL_1316 067ceb21a10cc307b89973085632bb37 336 Gene3D G3DSA:3.30.1400.10 203 336 2.6E-40 T 11-10-2018 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily GO:0090529 APJL_1316 067ceb21a10cc307b89973085632bb37 336 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 4 335 7.1E-52 T 11-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 APJL_1316 067ceb21a10cc307b89973085632bb37 336 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 207 333 2.6E-41 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 APJL_1316 067ceb21a10cc307b89973085632bb37 336 SMART SM00771 204 335 2.5E-60 T 11-10-2018 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0090529 APJL_1316 067ceb21a10cc307b89973085632bb37 336 Hamap MF_00509 Cell division protein ZipA [zipA]. 1 336 20.931 T 11-10-2018 IPR011919 Cell division protein ZipA GO:0016021|GO:0090529 APJL_0269 0d42dc9544402d0e82a335c937697288 229 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 14 222 3.3E-70 T 11-10-2018 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 APJL_0269 0d42dc9544402d0e82a335c937697288 229 Gene3D G3DSA:1.10.3720.10 2 226 1.4E-57 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0269 0d42dc9544402d0e82a335c937697288 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 27 214 8.4E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0269 0d42dc9544402d0e82a335c937697288 229 SUPERFAMILY SSF161098 5 216 3.01E-47 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1764 afa4c1110a27c2ed947095a43ddacdc7 471 SUPERFAMILY SSF52540 12 385 1.24E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1764 afa4c1110a27c2ed947095a43ddacdc7 471 Pfam PF13175 AAA ATPase domain 16 376 1.9E-28 T 11-10-2018 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 850 263.503 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 SUPERFAMILY SSF81593 181 296 6.75E-7 T 11-10-2018 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 Pfam PF08335 GlnD PII-uridylyltransferase 161 298 4.0E-30 T 11-10-2018 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 Gene3D G3DSA:1.10.3210.10 427 578 1.0E-6 T 11-10-2018 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 Gene3D G3DSA:3.30.70.260 775 849 8.4E-7 T 11-10-2018 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 SMART SM00471 431 578 3.1E-10 T 11-10-2018 IPR003607 HD/PDEase domain APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 Pfam PF01966 HD domain 436 568 5.4E-11 T 11-10-2018 IPR006674 HD domain APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 SUPERFAMILY SSF55021 776 841 1.6E-10 T 11-10-2018 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 Pfam PF01909 Nucleotidyltransferase domain 52 104 1.5E-4 T 11-10-2018 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 SUPERFAMILY SSF81301 23 156 4.28E-15 T 11-10-2018 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 SUPERFAMILY SSF109604 404 525 9.94E-13 T 11-10-2018 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 19 848 2.4E-273 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 SUPERFAMILY SSF55021 670 749 3.24E-9 T 11-10-2018 APJL_0592 eb3f53af5d4293dd73a0e76eabd3f722 850 PIRSF PIRSF006288 2 850 3.3E-274 T 11-10-2018 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 Gene3D G3DSA:1.10.275.10 1 138 1.8E-55 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 SUPERFAMILY SSF48557 3 460 1.41E-158 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 462 91.747 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 ProSitePatterns PS00163 Fumarate lyases signature. 317 326 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 Pfam PF10415 Fumarase C C-terminus 408 461 3.4E-26 T 11-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 461 1.4E-247 T 11-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 Gene3D G3DSA:1.20.200.10 139 406 1.1E-117 T 11-10-2018 APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 Gene3D G3DSA:1.10.40.30 408 462 3.2E-30 T 11-10-2018 APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 PRINTS PR00149 Fumarate lyase superfamily signature 180 198 4.2E-36 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 PRINTS PR00149 Fumarate lyase superfamily signature 271 298 4.2E-36 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 PRINTS PR00149 Fumarate lyase superfamily signature 134 152 4.2E-36 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 PRINTS PR00149 Fumarate lyase superfamily signature 317 333 4.2E-36 T 11-10-2018 IPR000362 Fumarate lyase family APJL_1792 b809f5a5c56187284948ffe847eb1d01 464 Pfam PF00206 Lyase 11 342 1.4E-110 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal APJL_1040 3a6cc405080a31fb527730bc0bf202db 78 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 3.4E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_1040 3a6cc405080a31fb527730bc0bf202db 78 SUPERFAMILY SSF46785 5 74 3.01E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1040 3a6cc405080a31fb527730bc0bf202db 78 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 2.0E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_1040 3a6cc405080a31fb527730bc0bf202db 78 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 2.0E-7 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_1040 3a6cc405080a31fb527730bc0bf202db 78 Gene3D G3DSA:1.10.10.10 8 77 1.9E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1040 3a6cc405080a31fb527730bc0bf202db 78 SMART SM00345 13 72 2.7E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_1057 9f6717985b2edb8271b8e6e58a22a2f9 289 Pfam PF01435 Peptidase family M48 79 288 3.5E-44 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APJL_1057 9f6717985b2edb8271b8e6e58a22a2f9 289 Hamap MF_00188 Protease HtpX [htpX]. 2 289 25.76 T 11-10-2018 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 APJL_1057 9f6717985b2edb8271b8e6e58a22a2f9 289 Gene3D G3DSA:3.30.2010.10 69 162 3.4E-36 T 11-10-2018 APJL_1202 9802ecec017e025cc3ac13919866c43b 346 Gene3D G3DSA:3.40.50.720 5 316 5.8E-111 T 11-10-2018 APJL_1202 9802ecec017e025cc3ac13919866c43b 346 SUPERFAMILY SSF55347 127 276 4.74E-25 T 11-10-2018 APJL_1202 9802ecec017e025cc3ac13919866c43b 346 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 4 118 1.1E-23 T 11-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 APJL_1202 9802ecec017e025cc3ac13919866c43b 346 SUPERFAMILY SSF51735 3 153 1.23E-41 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1202 9802ecec017e025cc3ac13919866c43b 346 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 132 220 2.6E-13 T 11-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 APJL_1202 9802ecec017e025cc3ac13919866c43b 346 Gene3D G3DSA:3.30.360.10 121 338 5.8E-111 T 11-10-2018 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 288 1.4E-110 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 Pfam PF00231 ATP synthase 5 287 1.4E-96 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.1E-36 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 1.1E-36 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.1E-36 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 1.1E-36 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 288 36.579 T 11-10-2018 IPR000131 ATP synthase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 Gene3D G3DSA:3.40.1380.10 61 207 3.8E-110 T 11-10-2018 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 274 287 - T 11-10-2018 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 SUPERFAMILY SSF52943 2 288 1.31E-96 T 11-10-2018 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1680 4746d2fecb206a197d7872e4fe81d786 288 Gene3D G3DSA:1.10.287.80 6 284 3.8E-110 T 11-10-2018 APJL_1998 8bbab87ccf85e8bfa7a1e42e23d02d11 412 Gene3D G3DSA:3.40.309.10 223 369 3.7E-156 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APJL_1998 8bbab87ccf85e8bfa7a1e42e23d02d11 412 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 2 411 39.657 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APJL_1998 8bbab87ccf85e8bfa7a1e42e23d02d11 412 SUPERFAMILY SSF53720 5 407 2.23E-108 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APJL_1998 8bbab87ccf85e8bfa7a1e42e23d02d11 412 Pfam PF00171 Aldehyde dehydrogenase family 7 287 3.2E-13 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APJL_1998 8bbab87ccf85e8bfa7a1e42e23d02d11 412 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 10 401 1.8E-174 T 11-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APJL_1998 8bbab87ccf85e8bfa7a1e42e23d02d11 412 PIRSF PIRSF000151 1 412 4.3E-166 T 11-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 APJL_1998 8bbab87ccf85e8bfa7a1e42e23d02d11 412 Gene3D G3DSA:3.40.605.10 15 406 3.7E-156 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APJL_1642 8b4e74337e4799f428bbda70bcc8af3d 210 Gene3D G3DSA:1.10.3680.10 75 209 3.1E-13 T 11-10-2018 IPR029024 TerB-like APJL_1642 8b4e74337e4799f428bbda70bcc8af3d 210 SUPERFAMILY SSF158682 65 208 1.57E-22 T 11-10-2018 IPR029024 TerB-like APJL_1642 8b4e74337e4799f428bbda70bcc8af3d 210 Pfam PF04391 Protein of unknown function (DUF533) 34 208 1.3E-48 T 11-10-2018 IPR007486 Inner membrane protein YebE APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 Pfam PF00162 Phosphoglycerate kinase 6 377 1.7E-132 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 363 380 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 133 155 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 164 186 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 105 120 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 304 329 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 340 351 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PRINTS PR00477 Phosphoglycerate kinase family signature 187 206 1.2E-79 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 PIRSF PIRSF000724 1 391 1.2E-129 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 SUPERFAMILY SSF53748 3 387 4.12E-139 T 11-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 387 37.936 T 11-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 Gene3D G3DSA:3.40.50.1260 10 383 1.3E-146 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1262 6efeedda170dd50dd166fa3a19b1f2d8 391 Gene3D G3DSA:3.40.50.1260 166 377 1.3E-146 T 11-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0410 4b00d8b51a1b70cf665cc4eb5fdc7171 271 TIGRFAM TIGR01533 lipo_e_P4: 5'-nucleotidase, lipoprotein e(P4) family 5 268 4.2E-93 T 11-10-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 APJL_0410 4b00d8b51a1b70cf665cc4eb5fdc7171 271 Pfam PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) 23 241 1.1E-57 T 11-10-2018 IPR005519 Acid phosphatase, class B-like APJL_0410 4b00d8b51a1b70cf665cc4eb5fdc7171 271 Gene3D G3DSA:3.40.50.1000 20 271 2.3E-95 T 11-10-2018 IPR023214 HAD superfamily APJL_0410 4b00d8b51a1b70cf665cc4eb5fdc7171 271 PIRSF PIRSF019271 1 271 7.2E-104 T 11-10-2018 IPR006423 5-nucleotidase lipoprotein e(P4) GO:0009279 APJL_0410 4b00d8b51a1b70cf665cc4eb5fdc7171 271 SUPERFAMILY SSF56784 54 249 1.96E-30 T 11-10-2018 IPR036412 HAD-like superfamily APJL_0610 b5d319bebe47f048d4315cc46ca5e964 396 Gene3D G3DSA:3.30.420.40 84 199 4.9E-39 T 11-10-2018 APJL_0610 b5d319bebe47f048d4315cc46ca5e964 396 SUPERFAMILY SSF53067 78 197 4.05E-7 T 11-10-2018 APJL_0610 b5d319bebe47f048d4315cc46ca5e964 396 SUPERFAMILY SSF53067 203 388 6.55E-15 T 11-10-2018 APJL_0610 b5d319bebe47f048d4315cc46ca5e964 396 Gene3D G3DSA:1.10.10.10 2 73 4.4E-15 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0610 b5d319bebe47f048d4315cc46ca5e964 396 Gene3D G3DSA:3.30.420.40 200 368 4.9E-39 T 11-10-2018 APJL_0610 b5d319bebe47f048d4315cc46ca5e964 396 SUPERFAMILY SSF46785 6 69 2.12E-11 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1323 66312769cf1e016a93d479366da891d1 232 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 222 3.6E-60 T 11-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 APJL_1323 66312769cf1e016a93d479366da891d1 232 SUPERFAMILY SSF100950 1 232 2.43E-62 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_1323 66312769cf1e016a93d479366da891d1 232 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 9 230 2.0E-56 T 11-10-2018 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31 APJL_1323 66312769cf1e016a93d479366da891d1 232 Gene3D G3DSA:3.40.50.1360 1 232 8.9E-80 T 11-10-2018 APJL_1323 66312769cf1e016a93d479366da891d1 232 ProDom PD884061 6-PHOSPHOGLUCONOLACTONASE HYDROLASE 6PGL HI0557 1 28 5.0E-5 T 11-10-2018 APJL_0239 aa999edb0e818ee3925491d7c3043285 196 Pfam PF03923 Uncharacterized lipoprotein 34 193 2.3E-48 T 11-10-2018 IPR005619 Uncharacterised protein family, YajG APJL_0065 4c31850cc76522f7528372fd56c3d8e2 334 Gene3D G3DSA:1.10.3720.10 87 327 6.1E-22 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0065 4c31850cc76522f7528372fd56c3d8e2 334 SUPERFAMILY SSF161098 92 317 4.41E-18 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0065 4c31850cc76522f7528372fd56c3d8e2 334 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 332 1.7E-43 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 394 6.7E-238 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 61.124 T 11-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 SUPERFAMILY SSF50465 298 393 2.45E-36 T 11-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 2.9E-58 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.5E-24 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 SUPERFAMILY SSF50447 205 301 1.57E-29 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 SUPERFAMILY SSF52540 6 219 2.22E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 5.5E-34 T 11-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 Gene3D G3DSA:2.40.30.10 206 334 2.1E-52 T 11-10-2018 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 Gene3D G3DSA:2.40.30.10 338 393 2.2E-30 T 11-10-2018 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.2E-14 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 8.0E-17 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 Gene3D G3DSA:3.40.50.300 1 203 1.4E-70 T 11-10-2018 APJL_1422 c9e143b3e4997bc7238ab091c7fa6273 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APJL_0183 60689b15d7d9220d7f9a31f0fd213b30 218 Hamap MF_00157 Ribonuclease T [rnt]. 1 218 108.093 T 11-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 APJL_0183 60689b15d7d9220d7f9a31f0fd213b30 218 TIGRFAM TIGR01298 RNaseT: ribonuclease T 11 209 1.8E-112 T 11-10-2018 IPR005987 Ribonuclease T GO:0004540|GO:0006396 APJL_0183 60689b15d7d9220d7f9a31f0fd213b30 218 Pfam PF00929 Exonuclease 21 195 1.8E-42 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APJL_0183 60689b15d7d9220d7f9a31f0fd213b30 218 SUPERFAMILY SSF53098 8 207 1.57E-56 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0183 60689b15d7d9220d7f9a31f0fd213b30 218 Gene3D G3DSA:3.30.420.10 10 216 2.2E-55 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0183 60689b15d7d9220d7f9a31f0fd213b30 218 SMART SM00479 19 204 1.1E-31 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APJL_0932 5b04bbd8d7b04d2193922327a6581fed 471 Gene3D G3DSA:1.25.40.10 30 228 1.1E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0932 5b04bbd8d7b04d2193922327a6581fed 471 SUPERFAMILY SSF48452 60 153 1.2E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0932 5b04bbd8d7b04d2193922327a6581fed 471 Pfam PF04575 Protein of unknown function (DUF560) 180 471 3.0E-104 T 11-10-2018 IPR007655 Protein of unknown function DUF560 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 SMART SM00357 3 67 1.0E-23 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 Gene3D G3DSA:2.40.50.140 1 65 4.0E-24 T 11-10-2018 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 PIRSF PIRSF002599 1 68 2.1E-21 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 SUPERFAMILY SSF50249 1 66 1.09E-21 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 PRINTS PR00050 Cold shock protein signature 40 58 1.7E-15 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 PRINTS PR00050 Cold shock protein signature 25 34 1.7E-15 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 PRINTS PR00050 Cold shock protein signature 4 19 1.7E-15 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 2.2E-35 T 11-10-2018 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 6.5E-27 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APJL_0726 cb68ac4f20170e2cd74378a908ccefed 68 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-10-2018 IPR019844 Cold-shock conserved site APJL_1106 d4f7af3aa5d14d4301489efa5042cfdd 104 SMART SM00418 8 85 2.3E-15 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_1106 d4f7af3aa5d14d4301489efa5042cfdd 104 Pfam PF12840 Helix-turn-helix domain 8 69 2.3E-14 T 11-10-2018 APJL_1106 d4f7af3aa5d14d4301489efa5042cfdd 104 SUPERFAMILY SSF46785 3 92 1.17E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1106 d4f7af3aa5d14d4301489efa5042cfdd 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 6.9E-8 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_1106 d4f7af3aa5d14d4301489efa5042cfdd 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 6.9E-8 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_1106 d4f7af3aa5d14d4301489efa5042cfdd 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 10 25 6.9E-8 T 11-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 APJL_1106 d4f7af3aa5d14d4301489efa5042cfdd 104 Gene3D G3DSA:1.10.10.10 1 93 9.1E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0493 703e9ad37e0a9018a74635ec5925690d 544 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 90 100 - T 11-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 APJL_0493 703e9ad37e0a9018a74635ec5925690d 544 Gene3D G3DSA:3.10.410.10 431 520 1.4E-36 T 11-10-2018 APJL_0493 703e9ad37e0a9018a74635ec5925690d 544 Gene3D G3DSA:3.40.50.300 1 426 1.1E-202 T 11-10-2018 APJL_0493 703e9ad37e0a9018a74635ec5925690d 544 SUPERFAMILY SSF52540 1 542 2.22E-237 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0493 703e9ad37e0a9018a74635ec5925690d 544 Pfam PF01268 Formate--tetrahydrofolate ligase 1 544 2.7E-264 T 11-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 APJL_0493 703e9ad37e0a9018a74635ec5925690d 544 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 1 544 48.211 T 11-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 APJL_0493 703e9ad37e0a9018a74635ec5925690d 544 Gene3D G3DSA:3.30.1510.10 116 234 1.1E-202 T 11-10-2018 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Pfam PF07517 SecA DEAD-like domain 7 402 1.6E-128 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.267 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 SMART SM00958 228 358 5.6E-76 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 SUPERFAMILY SSF52540 5 415 6.46E-83 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Pfam PF02810 SEC-C motif 882 899 1.8E-10 T 11-10-2018 IPR004027 SEC-C motif APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Gene3D G3DSA:3.40.50.300 417 620 4.7E-83 T 11-10-2018 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Gene3D G3DSA:3.40.50.300 22 415 2.7E-170 T 11-10-2018 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 SUPERFAMILY SSF52540 417 617 2.95E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Gene3D G3DSA:1.10.3060.10 621 833 4.6E-75 T 11-10-2018 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 ProSitePatterns PS01312 SecA family signature. 500 515 - T 11-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 SUPERFAMILY SSF81886 620 890 1.05E-80 T 11-10-2018 IPR036266 SecA, Wing/Scaffold superfamily APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Gene3D G3DSA:3.90.1440.10 229 368 2.7E-170 T 11-10-2018 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Pfam PF07516 SecA Wing and Scaffold domain 618 829 4.3E-65 T 11-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 SMART SM00957 6 402 7.1E-296 T 11-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 PRINTS PR00906 SecA protein signature 101 115 2.3E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 PRINTS PR00906 SecA protein signature 63 87 2.3E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 PRINTS PR00906 SecA protein signature 376 393 2.3E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 PRINTS PR00906 SecA protein signature 170 190 2.3E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 PRINTS PR00906 SecA protein signature 339 361 2.3E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 PRINTS PR00906 SecA protein signature 413 426 2.3E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 PRINTS PR00906 SecA protein signature 117 127 2.3E-72 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 816 0.0 T 11-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 Pfam PF01043 SecA preprotein cross-linking domain 233 358 1.2E-35 T 11-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 APJL_0244 0c52bf09390d1c52e9b4659c8ab27c33 905 SUPERFAMILY SSF81767 227 368 4.58E-40 T 11-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 APJL_0063 8131d888154564aff8fe1b57a7037b3f 531 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 73 95 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site APJL_0063 8131d888154564aff8fe1b57a7037b3f 531 Gene3D G3DSA:3.90.76.10 49 204 8.2E-181 T 11-10-2018 APJL_0063 8131d888154564aff8fe1b57a7037b3f 531 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 68 446 1.1E-103 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APJL_0063 8131d888154564aff8fe1b57a7037b3f 531 Gene3D G3DSA:3.40.190.10 205 517 8.2E-181 T 11-10-2018 APJL_0063 8131d888154564aff8fe1b57a7037b3f 531 SUPERFAMILY SSF53850 24 527 1.78E-154 T 11-10-2018 APJL_0063 8131d888154564aff8fe1b57a7037b3f 531 PIRSF PIRSF002741 16 531 1.8E-122 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_0063 8131d888154564aff8fe1b57a7037b3f 531 Gene3D G3DSA:3.10.105.10 286 504 8.2E-181 T 11-10-2018 APJL_0621 f02deb0dc52197581607893c27b4b65d 640 Pfam PF12704 MacB-like periplasmic core domain 268 483 1.3E-34 T 11-10-2018 IPR025857 MacB-like periplasmic core domain APJL_0621 f02deb0dc52197581607893c27b4b65d 640 Pfam PF02687 FtsX-like permease family 545 633 6.9E-12 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APJL_0621 f02deb0dc52197581607893c27b4b65d 640 SMART SM00382 32 219 2.4E-14 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0621 f02deb0dc52197581607893c27b4b65d 640 Gene3D G3DSA:3.40.50.300 1 262 3.6E-69 T 11-10-2018 APJL_0621 f02deb0dc52197581607893c27b4b65d 640 SUPERFAMILY SSF52540 3 227 1.52E-70 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0621 f02deb0dc52197581607893c27b4b65d 640 Pfam PF00005 ABC transporter 23 171 4.9E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0621 f02deb0dc52197581607893c27b4b65d 640 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0202 9885da5f0895d9182604540eb81cd2c0 137 SUPERFAMILY SSF48013 3 133 6.54E-41 T 11-10-2018 IPR035926 NusB-like superfamily APJL_0202 9885da5f0895d9182604540eb81cd2c0 137 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 4 135 21.737 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 APJL_0202 9885da5f0895d9182604540eb81cd2c0 137 Pfam PF01029 NusB family 7 131 1.5E-30 T 11-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 APJL_0202 9885da5f0895d9182604540eb81cd2c0 137 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 6 132 8.8E-40 T 11-10-2018 IPR011605 NusB antitermination factor GO:0006353 APJL_0202 9885da5f0895d9182604540eb81cd2c0 137 Gene3D G3DSA:1.10.940.10 1 137 3.0E-43 T 11-10-2018 IPR035926 NusB-like superfamily APJL_0929 2bcc92fb0b3a4c990e02f5bf399966e7 270 Gene3D G3DSA:3.30.420.10 105 266 1.3E-9 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0929 2bcc92fb0b3a4c990e02f5bf399966e7 270 Pfam PF00665 Integrase core domain 109 224 1.7E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_0929 2bcc92fb0b3a4c990e02f5bf399966e7 270 Pfam PF13276 HTH-like domain 33 86 3.8E-16 T 11-10-2018 IPR025948 HTH-like domain APJL_0929 2bcc92fb0b3a4c990e02f5bf399966e7 270 SUPERFAMILY SSF53098 104 263 2.88E-34 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1560 9450eb254d5e8325d179e11dafc98e17 123 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 115 17.57 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APJL_1560 9450eb254d5e8325d179e11dafc98e17 123 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 110 1.6E-21 T 11-10-2018 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 APJL_0620 0be7e77f8dc653a36b9c4ae0677c77b7 257 Gene3D G3DSA:3.40.1390.30 99 228 3.9E-81 T 11-10-2018 APJL_0620 0be7e77f8dc653a36b9c4ae0677c77b7 257 Gene3D G3DSA:3.40.1390.30 16 242 3.9E-81 T 11-10-2018 APJL_0620 0be7e77f8dc653a36b9c4ae0677c77b7 257 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 244 4.4E-60 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 APJL_0620 0be7e77f8dc653a36b9c4ae0677c77b7 257 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 5 256 5.8E-74 T 11-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 APJL_0620 0be7e77f8dc653a36b9c4ae0677c77b7 257 SUPERFAMILY SSF102705 5 256 6.02E-81 T 11-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily APJL_0310 f95109bb4ad855d030b88f14258aff4c 32 Pfam PF08173 Membrane bound YbgT-like protein 1 26 2.5E-11 T 11-10-2018 IPR012994 Membrane bound YbgT-like APJL_2093 ff6589469d509f2198637177e53832f9 320 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 53 307 5.8E-90 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 APJL_2093 ff6589469d509f2198637177e53832f9 320 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 216 222 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_2093 ff6589469d509f2198637177e53832f9 320 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 24 312 5.8E-87 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 APJL_2093 ff6589469d509f2198637177e53832f9 320 Gene3D G3DSA:1.10.8.10 25 114 3.4E-20 T 11-10-2018 APJL_2093 ff6589469d509f2198637177e53832f9 320 Pfam PF13847 Methyltransferase domain 143 302 3.5E-35 T 11-10-2018 IPR025714 Methyltransferase domain APJL_2093 ff6589469d509f2198637177e53832f9 320 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 31 311 42.671 T 11-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 APJL_2093 ff6589469d509f2198637177e53832f9 320 SUPERFAMILY SSF53335 29 308 6.11E-52 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_2093 ff6589469d509f2198637177e53832f9 320 Gene3D G3DSA:3.40.50.150 115 311 2.8E-59 T 11-10-2018 APJL_0194 99891a1484acf276308badc97fb08484 329 Gene3D G3DSA:3.40.50.1970 1 135 9.8E-56 T 11-10-2018 APJL_0194 99891a1484acf276308badc97fb08484 329 SUPERFAMILY SSF56796 1 320 3.53E-111 T 11-10-2018 APJL_0194 99891a1484acf276308badc97fb08484 329 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 319 64.114 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APJL_0194 99891a1484acf276308badc97fb08484 329 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 1 318 5.0E-116 T 11-10-2018 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APJL_0194 99891a1484acf276308badc97fb08484 329 PIRSF PIRSF001455 1 327 1.2E-104 T 11-10-2018 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APJL_0194 99891a1484acf276308badc97fb08484 329 Pfam PF01761 3-dehydroquinate synthase 30 288 1.2E-108 T 11-10-2018 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 APJL_0194 99891a1484acf276308badc97fb08484 329 Gene3D G3DSA:1.20.1090.10 136 324 4.5E-65 T 11-10-2018 APJL_0238 247b0400829a1f71cfc3d0c65fcea074 243 Pfam PF04452 RNA methyltransferase 20 237 1.7E-74 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 APJL_0238 247b0400829a1f71cfc3d0c65fcea074 243 SUPERFAMILY SSF88697 2 69 5.96E-17 T 11-10-2018 IPR015947 PUA-like superfamily APJL_0238 247b0400829a1f71cfc3d0c65fcea074 243 Gene3D G3DSA:3.40.1280.10 74 243 6.7E-65 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APJL_0238 247b0400829a1f71cfc3d0c65fcea074 243 SUPERFAMILY SSF75217 75 243 1.83E-51 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APJL_0238 247b0400829a1f71cfc3d0c65fcea074 243 PIRSF PIRSF015601 2 243 2.5E-53 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 APJL_0238 247b0400829a1f71cfc3d0c65fcea074 243 Gene3D G3DSA:2.40.240.20 1 70 1.2E-20 T 11-10-2018 APJL_0238 247b0400829a1f71cfc3d0c65fcea074 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 1.4E-87 T 11-10-2018 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 APJL_1752 42a0b4f7fbac4290cb7c8cecf304ef50 229 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 2.8E-97 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 APJL_1752 42a0b4f7fbac4290cb7c8cecf304ef50 229 PIRSF PIRSF002155 1 227 5.9E-72 T 11-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1752 42a0b4f7fbac4290cb7c8cecf304ef50 229 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 39.881 T 11-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 APJL_1752 42a0b4f7fbac4290cb7c8cecf304ef50 229 Gene3D G3DSA:3.30.190.20 21 225 9.1E-73 T 11-10-2018 APJL_1752 42a0b4f7fbac4290cb7c8cecf304ef50 229 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 11-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1752 42a0b4f7fbac4290cb7c8cecf304ef50 229 Gene3D G3DSA:3.40.50.790 68 159 9.1E-73 T 11-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich APJL_1752 42a0b4f7fbac4290cb7c8cecf304ef50 229 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 6.8E-47 T 11-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein APJL_1752 42a0b4f7fbac4290cb7c8cecf304ef50 229 SUPERFAMILY SSF56808 6 225 1.44E-75 T 11-10-2018 IPR023674 Ribosomal protein L1-like APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 Gene3D G3DSA:1.10.1740.10 1 120 1.6E-42 T 11-10-2018 APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 SUPERFAMILY SSF88946 6 105 4.71E-30 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 3 189 1.7E-90 T 11-10-2018 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 SUPERFAMILY SSF88659 122 182 1.66E-17 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 46 77 - T 11-10-2018 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 Gene3D G3DSA:1.10.10.10 121 191 5.7E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 Pfam PF08281 Sigma-70, region 4 133 180 1.3E-17 T 11-10-2018 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 181 2.1E-29 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APJL_0415 bdf936121d4fea9d897a12c00c6b1d66 192 Pfam PF04542 Sigma-70 region 2 25 91 9.3E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APJL_1327 39c3d9132b2123c0b7f052894dfee87a 134 Pfam PF01479 S4 domain 11 57 2.4E-13 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1327 39c3d9132b2123c0b7f052894dfee87a 134 Gene3D G3DSA:3.10.290.10 4 110 5.7E-38 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APJL_1327 39c3d9132b2123c0b7f052894dfee87a 134 SUPERFAMILY SSF55174 10 104 1.02E-29 T 11-10-2018 APJL_1327 39c3d9132b2123c0b7f052894dfee87a 134 PIRSF PIRSF016821 8 134 3.6E-46 T 11-10-2018 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 APJL_1327 39c3d9132b2123c0b7f052894dfee87a 134 SMART SM00363 11 74 1.6E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 1.1E-11 T 11-10-2018 APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 50 59 1.1E-11 T 11-10-2018 APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00096 Glutamine amidotransferase superfamily signature 77 88 1.1E-11 T 11-10-2018 APJL_1167 aac48f36b10154daa663e5105e53a323 199 Pfam PF00117 Glutamine amidotransferase class-I 9 189 1.5E-39 T 11-10-2018 IPR017926 Glutamine amidotransferase APJL_1167 aac48f36b10154daa663e5105e53a323 199 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 7 191 9.1E-45 T 11-10-2018 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1167 aac48f36b10154daa663e5105e53a323 199 Gene3D G3DSA:3.40.50.880 5 192 9.4E-51 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_1167 aac48f36b10154daa663e5105e53a323 199 SUPERFAMILY SSF52317 7 192 3.4E-44 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00097 Anthranilate synthase component II signature 7 21 1.7E-25 T 11-10-2018 APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00097 Anthranilate synthase component II signature 102 110 1.7E-25 T 11-10-2018 APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00097 Anthranilate synthase component II signature 169 182 1.7E-25 T 11-10-2018 APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00097 Anthranilate synthase component II signature 50 59 1.7E-25 T 11-10-2018 APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00097 Anthranilate synthase component II signature 123 135 1.7E-25 T 11-10-2018 APJL_1167 aac48f36b10154daa663e5105e53a323 199 PRINTS PR00097 Anthranilate synthase component II signature 77 88 1.7E-25 T 11-10-2018 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 Gene3D G3DSA:3.40.50.720 108 296 4.0E-108 T 11-10-2018 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 117 293 4.0E-52 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 SUPERFAMILY SSF55021 337 408 3.04E-16 T 11-10-2018 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 Gene3D G3DSA:3.30.70.260 327 408 1.9E-29 T 11-10-2018 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 228 244 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 325 4.9E-38 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 SUPERFAMILY SSF52283 6 137 4.16E-49 T 11-10-2018 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 153 180 - T 11-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 199 221 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 Gene3D G3DSA:3.40.50.720 13 311 4.0E-108 T 11-10-2018 APJL_1474 2d82a6e110e1cf051d9042c62dbfb029 409 SUPERFAMILY SSF51735 107 294 5.7E-57 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1948 356fb31d511bcdf3205546a3b6bc83f7 274 Gene3D G3DSA:3.40.50.1820 6 272 1.3E-51 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1948 356fb31d511bcdf3205546a3b6bc83f7 274 SUPERFAMILY SSF53474 7 269 6.2E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1948 356fb31d511bcdf3205546a3b6bc83f7 274 Pfam PF00756 Putative esterase 21 214 1.9E-25 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 TIGRFAM TIGR00835 agcS: amino acid carrier protein 24 447 2.7E-162 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 Pfam PF01235 Sodium:alanine symporter family 62 459 2.7E-152 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 PRINTS PR00175 Sodium/alanine symporter signature 356 378 2.5E-53 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 PRINTS PR00175 Sodium/alanine symporter signature 97 119 2.5E-53 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 PRINTS PR00175 Sodium/alanine symporter signature 188 206 2.5E-53 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 PRINTS PR00175 Sodium/alanine symporter signature 416 436 2.5E-53 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 PRINTS PR00175 Sodium/alanine symporter signature 216 235 2.5E-53 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 PRINTS PR00175 Sodium/alanine symporter signature 311 329 2.5E-53 T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0520 e78094d3d74ce34fa01067ac94a59778 482 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 97 112 - T 11-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 SUPERFAMILY SSF53067 5 255 1.76E-96 T 11-10-2018 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 PIRSF PIRSF000538 3 502 6.4E-180 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 261 450 4.8E-63 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 4 496 3.0E-229 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 Gene3D G3DSA:3.30.420.40 2 253 2.1E-113 T 11-10-2018 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 SUPERFAMILY SSF53067 255 496 7.22E-87 T 11-10-2018 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 Hamap MF_00186 Glycerol kinase [glpK]. 3 497 58.83 T 11-10-2018 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|Reactome: R-HSA-75109 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 Gene3D G3DSA:3.30.420.40 254 500 2.1E-93 T 11-10-2018 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 362 382 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 5 252 8.5E-90 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APJL_0393 46e6885aa42a94283854ad7b73be3c8a 503 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 135 147 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 SUPERFAMILY SSF55785 97 195 1.27E-7 T 11-10-2018 IPR035965 PAS domain superfamily APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 Pfam PF00512 His Kinase A (phospho-acceptor) domain 203 267 1.0E-15 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 95 419 2.1E-120 T 11-10-2018 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 SMART SM00387 311 423 3.4E-33 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 SMART SM00091 98 165 4.7E-5 T 11-10-2018 IPR000014 PAS domain APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 SUPERFAMILY SSF47384 190 267 4.71E-16 T 11-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 Gene3D G3DSA:3.30.565.10 270 424 2.1E-36 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 Pfam PF00989 PAS fold 102 180 6.9E-6 T 11-10-2018 IPR013767 PAS fold GO:0006355 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 401 1.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 420 1.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 376 1.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 362 1.6E-12 T 11-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 SMART SM00388 203 268 4.2E-18 T 11-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 Gene3D G3DSA:3.30.450.20 94 196 1.0E-6 T 11-10-2018 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 311 421 1.3E-23 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 Gene3D G3DSA:1.10.287.130 197 268 9.4E-17 T 11-10-2018 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 Pfam PF11808 Domain of unknown function (DUF3329) 10 90 1.9E-8 T 11-10-2018 IPR021766 Phosphate regulon sensor protein PhoR GO:0000155|GO:0000160|GO:0004721 APJL_1267 a8245c3353958a6e9d9b2e26bd371fcd 430 SUPERFAMILY SSF55874 263 421 4.71E-37 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 Pfam PF03952 Enolase, N-terminal domain 4 134 1.0E-57 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 SUPERFAMILY SSF51604 144 426 5.94E-124 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 421 5.0E-208 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 430 1.3E-134 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 SMART SM01192 143 434 2.2E-209 T 11-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 PIRSF PIRSF001400 1 430 8.3E-190 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 Gene3D G3DSA:3.30.390.10 3 127 2.3E-54 T 11-10-2018 IPR029017 Enolase-like, N-terminal APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 SMART SM01193 4 134 1.6E-92 T 11-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 Gene3D G3DSA:3.20.20.120 128 435 9.4E-130 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 ProSitePatterns PS00164 Enolase signature. 340 353 - T 11-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 Hamap MF_00318 Enolase [eno]. 2 417 43.608 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 SUPERFAMILY SSF54826 3 138 1.12E-55 T 11-10-2018 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 PRINTS PR00148 Enolase signature 340 354 9.4E-45 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 PRINTS PR00148 Enolase signature 107 123 9.4E-45 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 PRINTS PR00148 Enolase signature 37 51 9.4E-45 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 PRINTS PR00148 Enolase signature 317 328 9.4E-45 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 PRINTS PR00148 Enolase signature 369 386 9.4E-45 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1132 30a750e821dfe72e925649f4c56c6f81 436 PRINTS PR00148 Enolase signature 165 178 9.4E-45 T 11-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 APJL_1285 ccd14dbdb8a0d1985a5303dcbcd9dc14 393 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 26 373 74.017 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 APJL_1285 ccd14dbdb8a0d1985a5303dcbcd9dc14 393 Gene3D G3DSA:3.20.20.70 88 358 7.2E-112 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1285 ccd14dbdb8a0d1985a5303dcbcd9dc14 393 PIRSF PIRSF006004 19 386 2.8E-147 T 11-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 APJL_1285 ccd14dbdb8a0d1985a5303dcbcd9dc14 393 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 23 378 4.0E-172 T 11-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 APJL_1285 ccd14dbdb8a0d1985a5303dcbcd9dc14 393 SUPERFAMILY SSF102114 125 342 2.88E-14 T 11-10-2018 APJL_1285 ccd14dbdb8a0d1985a5303dcbcd9dc14 393 Pfam PF04055 Radical SAM superfamily 129 298 5.0E-16 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_1285 ccd14dbdb8a0d1985a5303dcbcd9dc14 393 Gene3D G3DSA:1.10.150.530 1 87 1.6E-28 T 11-10-2018 APJL_0666 ea9088cbcb34b1f5fa4ff26672c8fc33 272 SUPERFAMILY SSF89550 1 271 7.98E-54 T 11-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 APJL_0666 ea9088cbcb34b1f5fa4ff26672c8fc33 272 Pfam PF02811 PHP domain 4 126 6.6E-12 T 11-10-2018 IPR004013 PHP domain GO:0003824 APJL_0666 ea9088cbcb34b1f5fa4ff26672c8fc33 272 SMART SM00481 3 68 7.0E-20 T 11-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal APJL_0666 ea9088cbcb34b1f5fa4ff26672c8fc33 272 Gene3D G3DSA:1.10.150.650 96 166 6.5E-82 T 11-10-2018 APJL_0666 ea9088cbcb34b1f5fa4ff26672c8fc33 272 Gene3D G3DSA:3.20.20.140 4 247 6.5E-82 T 11-10-2018 APJL_0288 b1664e11551a1607858c3daf29223330 250 PIRSF PIRSF005902 1 250 1.5E-40 T 11-10-2018 IPR001130 TatD family GO:0016788 APJL_0288 b1664e11551a1607858c3daf29223330 250 SUPERFAMILY SSF51556 1 249 1.4E-41 T 11-10-2018 IPR032466 Metal-dependent hydrolase APJL_0288 b1664e11551a1607858c3daf29223330 250 Gene3D G3DSA:3.20.20.140 1 250 6.4E-47 T 11-10-2018 APJL_0288 b1664e11551a1607858c3daf29223330 250 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 1 9 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APJL_0288 b1664e11551a1607858c3daf29223330 250 Pfam PF01026 TatD related DNase 2 247 9.5E-38 T 11-10-2018 IPR001130 TatD family GO:0016788 APJL_1520 02fc257e675d307a0369dd0834115b9e 100 SMART SM00530 32 87 0.003 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_1520 02fc257e675d307a0369dd0834115b9e 100 SUPERFAMILY SSF47413 25 92 3.1E-11 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_1520 02fc257e675d307a0369dd0834115b9e 100 Gene3D G3DSA:1.10.260.40 3 89 6.3E-9 T 11-10-2018 APJL_1520 02fc257e675d307a0369dd0834115b9e 100 Pfam PF13744 Helix-turn-helix domain 32 88 1.8E-9 T 11-10-2018 IPR039554 HigA2-like, helix-turn-helix domain APJL_1280 6c796a0c2545e7f80dcb8e12420c95bb 247 Gene3D G3DSA:3.90.730.10 70 216 2.3E-24 T 11-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 APJL_1280 6c796a0c2545e7f80dcb8e12420c95bb 247 Pfam PF00445 Ribonuclease T2 family 82 199 1.5E-13 T 11-10-2018 IPR001568 Ribonuclease T2-like GO:0003723|GO:0033897 Reactome: R-HSA-6798695 APJL_1280 6c796a0c2545e7f80dcb8e12420c95bb 247 ProSitePatterns PS00530 Ribonuclease T2 family histidine active site 1. 121 128 - T 11-10-2018 IPR018188 Ribonuclease T2, His active site 1 GO:0003723|GO:0033897 Reactome: R-HSA-6798695 APJL_1280 6c796a0c2545e7f80dcb8e12420c95bb 247 ProSitePatterns PS00531 Ribonuclease T2 family histidine active site 2. 167 178 - T 11-10-2018 IPR033130 Ribonuclease T2, His active site 2 Reactome: R-HSA-6798695 APJL_1280 6c796a0c2545e7f80dcb8e12420c95bb 247 SUPERFAMILY SSF55895 78 246 7.59E-33 T 11-10-2018 IPR036430 Ribonuclease T2-like superfamily GO:0003723|GO:0033897 Reactome: R-HSA-6798695 APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 266 7.7E-76 T 11-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 668 0.0 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 Pfam PF13361 UvrD-like helicase C-terminal domain 270 613 5.4E-73 T 11-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 Gene3D G3DSA:1.10.486.10 376 544 9.0E-127 T 11-10-2018 APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 668 39.661 T 11-10-2018 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 SUPERFAMILY SSF52540 1 636 1.46E-163 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 Gene3D G3DSA:1.10.10.160 108 181 5.7E-98 T 11-10-2018 IPR013986 DExx box DNA helicase domain superfamily APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 Gene3D G3DSA:3.40.50.300 4 265 5.7E-98 T 11-10-2018 APJL_0289 f0fb9d36d5690466fa7539c560e26ab4 672 Gene3D G3DSA:3.40.50.300 273 632 9.0E-127 T 11-10-2018 APJL_0903 a803238546d363cf16c42e9f5c5b0a77 268 Pfam PF02634 FdhD/NarQ family 25 263 4.1E-70 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 APJL_0903 a803238546d363cf16c42e9f5c5b0a77 268 SUPERFAMILY SSF53927 4 263 8.42E-73 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APJL_0903 a803238546d363cf16c42e9f5c5b0a77 268 Gene3D G3DSA:3.40.140.10 119 268 2.2E-43 T 11-10-2018 APJL_0903 a803238546d363cf16c42e9f5c5b0a77 268 PIRSF PIRSF015626 1 267 6.3E-77 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 APJL_0903 a803238546d363cf16c42e9f5c5b0a77 268 Gene3D G3DSA:3.10.20.10 27 112 3.8E-9 T 11-10-2018 APJL_0903 a803238546d363cf16c42e9f5c5b0a77 268 Hamap MF_00187 Sulfur carrier protein FdhD [fdhD]. 1 264 31.318 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 APJL_0903 a803238546d363cf16c42e9f5c5b0a77 268 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 22 263 3.4E-71 T 11-10-2018 IPR003786 Sulfur carrier protein FdhD GO:0016783 APJL_2011 93c3ab7951ad08f81e8dd400795ac7f3 107 Gene3D G3DSA:1.10.287.1080 1 102 1.6E-24 T 11-10-2018 APJL_2011 93c3ab7951ad08f81e8dd400795ac7f3 107 PIRSF PIRSF036521 1 107 1.9E-52 T 11-10-2018 IPR011411 NTP Pyrophosphohydrolase MazG-related APJL_2011 93c3ab7951ad08f81e8dd400795ac7f3 107 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 29 103 7.8E-12 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core APJL_2011 93c3ab7951ad08f81e8dd400795ac7f3 107 SUPERFAMILY SSF101386 1 103 2.43E-26 T 11-10-2018 APJL_1380 e54cc82baeb0c97892ae46ef3b642963 582 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 4 576 28.396 T 11-10-2018 IPR007443 Penicillin-binding protein activator LpoA APJL_1380 e54cc82baeb0c97892ae46ef3b642963 582 Gene3D G3DSA:3.40.50.2300 269 569 1.0E-80 T 11-10-2018 APJL_1380 e54cc82baeb0c97892ae46ef3b642963 582 Pfam PF04348 LppC putative lipoprotein 41 576 5.0E-163 T 11-10-2018 IPR007443 Penicillin-binding protein activator LpoA APJL_1380 e54cc82baeb0c97892ae46ef3b642963 582 Gene3D G3DSA:1.25.40.650 157 267 2.6E-28 T 11-10-2018 APJL_1380 e54cc82baeb0c97892ae46ef3b642963 582 Gene3D G3DSA:1.25.40.10 24 153 2.5E-25 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1380 e54cc82baeb0c97892ae46ef3b642963 582 SUPERFAMILY SSF53822 267 578 5.65E-77 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_1380 e54cc82baeb0c97892ae46ef3b642963 582 Gene3D G3DSA:3.40.50.2300 368 570 1.0E-80 T 11-10-2018 APJL_1356 4b5514b7acbfde0cbd740581eb43c6c2 113 ProSitePatterns PS01249 Hydrogenases expression/synthesis hypA family signature. 34 76 - T 11-10-2018 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site APJL_1356 4b5514b7acbfde0cbd740581eb43c6c2 113 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 111 5.4E-32 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 APJL_1356 4b5514b7acbfde0cbd740581eb43c6c2 113 PIRSF PIRSF004761 1 113 5.5E-36 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 APJL_1356 4b5514b7acbfde0cbd740581eb43c6c2 113 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 112 4.7E-36 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 APJL_1356 4b5514b7acbfde0cbd740581eb43c6c2 113 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 20.207 T 11-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 APJL_1356 4b5514b7acbfde0cbd740581eb43c6c2 113 Gene3D G3DSA:3.30.2320.80 1 113 1.9E-31 T 11-10-2018 APJL_1390 97d22a7be0036cb70cf38136b44d6c48 211 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1390 97d22a7be0036cb70cf38136b44d6c48 211 Gene3D G3DSA:3.40.50.300 1 210 6.0E-40 T 11-10-2018 APJL_1390 97d22a7be0036cb70cf38136b44d6c48 211 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 7 206 2.0E-75 T 11-10-2018 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004 APJL_1390 97d22a7be0036cb70cf38136b44d6c48 211 SMART SM00382 31 207 0.0015 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1390 97d22a7be0036cb70cf38136b44d6c48 211 Pfam PF00005 ABC transporter 23 163 1.1E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1390 97d22a7be0036cb70cf38136b44d6c48 211 SUPERFAMILY SSF52540 7 197 1.66E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 Pfam PF00549 CoA-ligase 151 270 6.2E-21 T 11-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 43.192 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 PIRSF PIRSF001553 1 290 1.4E-136 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 11-10-2018 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 Gene3D G3DSA:3.40.50.261 124 289 1.2E-75 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 288 1.1E-147 T 11-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 Pfam PF02629 CoA binding domain 6 99 9.6E-32 T 11-10-2018 IPR003781 CoA-binding GO:0048037 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 SMART SM00881 4 100 2.7E-36 T 11-10-2018 IPR003781 CoA-binding GO:0048037 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 SUPERFAMILY SSF51735 1 122 4.4E-44 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 SUPERFAMILY SSF52210 123 288 1.31E-55 T 11-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 11-10-2018 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 2.8E-41 T 11-10-2018 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 2.8E-41 T 11-10-2018 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 2.8E-41 T 11-10-2018 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 2.8E-41 T 11-10-2018 APJL_0478 e8306b4d47c6cceeb42193c0838964f3 290 Gene3D G3DSA:3.40.50.720 2 123 1.3E-52 T 11-10-2018 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 97 108 - T 11-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 SUPERFAMILY SSF54211 5 192 9.11E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0255 863db878a5383d665dc9eb36afa9979e 316 Gene3D G3DSA:3.30.230.10 6 174 6.3E-87 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_0255 863db878a5383d665dc9eb36afa9979e 316 PIRSF PIRSF000676 1 316 3.7E-80 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 Pfam PF08544 GHMP kinases C terminal 235 294 4.5E-10 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain APJL_0255 863db878a5383d665dc9eb36afa9979e 316 TIGRFAM TIGR00191 thrB: homoserine kinase 4 315 1.2E-112 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 SUPERFAMILY SSF55060 179 295 1.76E-31 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily APJL_0255 863db878a5383d665dc9eb36afa9979e 316 Hamap MF_00384 Homoserine kinase [thrB]. 6 315 29.579 T 11-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 Gene3D G3DSA:3.30.70.890 175 284 6.3E-87 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily APJL_0255 863db878a5383d665dc9eb36afa9979e 316 Pfam PF00288 GHMP kinases N terminal domain 90 157 1.7E-13 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 PRINTS PR00958 Homoserine kinase signature 11 26 1.6E-33 T 11-10-2018 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 PRINTS PR00958 Homoserine kinase signature 261 276 1.6E-33 T 11-10-2018 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 PRINTS PR00958 Homoserine kinase signature 144 157 1.6E-33 T 11-10-2018 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 PRINTS PR00958 Homoserine kinase signature 182 199 1.6E-33 T 11-10-2018 APJL_0255 863db878a5383d665dc9eb36afa9979e 316 PRINTS PR00958 Homoserine kinase signature 104 119 1.6E-33 T 11-10-2018 APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 Gene3D G3DSA:3.10.580.10 192 311 9.5E-30 T 11-10-2018 APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 PIRSF PIRSF004692 1 311 9.9E-125 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 Pfam PF01380 SIS domain 37 168 3.5E-31 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 SUPERFAMILY SSF53697 2 274 7.56E-64 T 11-10-2018 APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 Pfam PF00571 CBS domain 197 251 1.1E-5 T 11-10-2018 IPR000644 CBS domain APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 Pfam PF00571 CBS domain 263 306 5.6E-5 T 11-10-2018 IPR000644 CBS domain APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 SUPERFAMILY SSF54631 256 308 1.41E-6 T 11-10-2018 APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 41 308 1.2E-114 T 11-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 SMART SM00116 269 311 24.0 T 11-10-2018 IPR000644 CBS domain APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 SMART SM00116 204 251 0.0033 T 11-10-2018 IPR000644 CBS domain APJL_0408 970ed5825475302b7ae2f6c4022ca259 311 Gene3D G3DSA:3.40.50.10490 1 191 2.8E-66 T 11-10-2018 APJL_1354 0c48849fabdf0588085a728f58a0abe6 167 Gene3D G3DSA:3.30.1460.40 13 146 7.3E-38 T 11-10-2018 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily APJL_1354 0c48849fabdf0588085a728f58a0abe6 167 ProDom PD008308 HUPJ HYDROGENASE EXPRESSION/FORMATION HYDROGENASE-2 HYBE COMPONENT OPERON ELECTRON METAL-BINDING IRON 34 162 7.0E-50 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE APJL_1354 0c48849fabdf0588085a728f58a0abe6 167 Pfam PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE 26 162 4.1E-38 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE APJL_1354 0c48849fabdf0588085a728f58a0abe6 167 TIGRFAM TIGR03993 hydrog_HybE: [NiFe] hydrogenase assembly chaperone, HybE family 28 162 4.2E-47 T 11-10-2018 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE APJL_1019 431b01edb80be10250b90fdedab20359 516 Gene3D G3DSA:3.90.76.10 82 205 1.2E-40 T 11-10-2018 APJL_1019 431b01edb80be10250b90fdedab20359 516 Gene3D G3DSA:3.40.190.10 62 225 1.2E-40 T 11-10-2018 APJL_1019 431b01edb80be10250b90fdedab20359 516 SUPERFAMILY SSF53850 49 507 1.56E-73 T 11-10-2018 APJL_1019 431b01edb80be10250b90fdedab20359 516 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 94 431 6.9E-34 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APJL_1019 431b01edb80be10250b90fdedab20359 516 Gene3D G3DSA:3.10.105.10 280 483 2.7E-35 T 11-10-2018 APJL_1019 431b01edb80be10250b90fdedab20359 516 PIRSF PIRSF002741 252 514 6.7E-32 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_1019 431b01edb80be10250b90fdedab20359 516 PIRSF PIRSF002741 5 237 1.3E-25 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_0551 6ec446ea0e08db71660d4fc097151eba 499 SMART SM00382 22 329 6.2E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0551 6ec446ea0e08db71660d4fc097151eba 499 SUPERFAMILY SSF52540 8 383 4.31E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0551 6ec446ea0e08db71660d4fc097151eba 499 Gene3D G3DSA:3.40.50.300 2 94 7.1E-11 T 11-10-2018 APJL_0551 6ec446ea0e08db71660d4fc097151eba 499 Gene3D G3DSA:3.40.50.300 203 385 4.0E-22 T 11-10-2018 APJL_0551 6ec446ea0e08db71660d4fc097151eba 499 Pfam PF05872 Bacterial protein of unknown function (DUF853) 5 497 1.3E-234 T 11-10-2018 IPR033186 Helicase HerA-like C-terminal APJL_1407 402fb17a60502953fb0be8bdf6fda485 420 Pfam PF03471 Transporter associated domain 343 418 3.4E-17 T 11-10-2018 IPR005170 Transporter-associated domain APJL_1407 402fb17a60502953fb0be8bdf6fda485 420 Gene3D G3DSA:3.30.465.10 339 417 1.5E-28 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APJL_1407 402fb17a60502953fb0be8bdf6fda485 420 SUPERFAMILY SSF54631 197 333 3.16E-23 T 11-10-2018 APJL_1407 402fb17a60502953fb0be8bdf6fda485 420 SMART SM01091 341 419 2.6E-23 T 11-10-2018 IPR005170 Transporter-associated domain APJL_1407 402fb17a60502953fb0be8bdf6fda485 420 SUPERFAMILY SSF56176 339 419 2.48E-19 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APJL_1407 402fb17a60502953fb0be8bdf6fda485 420 Gene3D G3DSA:3.10.580.10 199 329 1.5E-40 T 11-10-2018 APJL_1407 402fb17a60502953fb0be8bdf6fda485 420 Pfam PF01595 Domain of unknown function DUF21 13 179 4.2E-45 T 11-10-2018 IPR002550 CNNM, transmembrane domain APJL_1407 402fb17a60502953fb0be8bdf6fda485 420 Pfam PF00571 CBS domain 278 325 2.8E-4 T 11-10-2018 IPR000644 CBS domain APJL_1313 15e6c88f51b29163460ba68c49e13d96 426 Pfam PF07690 Major Facilitator Superfamily 69 324 4.5E-18 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_1313 15e6c88f51b29163460ba68c49e13d96 426 SUPERFAMILY SSF103473 9 423 2.49E-30 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_1313 15e6c88f51b29163460ba68c49e13d96 426 TIGRFAM TIGR00901 2A0125: AmpG-like permease 32 381 1.2E-111 T 11-10-2018 APJL_1313 15e6c88f51b29163460ba68c49e13d96 426 Gene3D G3DSA:1.20.1250.20 68 421 3.6E-21 T 11-10-2018 APJL_0400 02dd36156fb33009c5dd267bba41a71f 424 Pfam PF02754 Cysteine-rich domain 319 403 1.2E-14 T 11-10-2018 IPR004017 Cysteine-rich domain APJL_0400 02dd36156fb33009c5dd267bba41a71f 424 Pfam PF02754 Cysteine-rich domain 190 275 6.2E-14 T 11-10-2018 IPR004017 Cysteine-rich domain APJL_0400 02dd36156fb33009c5dd267bba41a71f 424 Pfam PF13183 4Fe-4S dicluster domain 27 91 7.4E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_0400 02dd36156fb33009c5dd267bba41a71f 424 Gene3D G3DSA:1.10.1060.10 2 115 3.4E-7 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_0400 02dd36156fb33009c5dd267bba41a71f 424 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 77 88 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_0400 02dd36156fb33009c5dd267bba41a71f 424 SUPERFAMILY SSF46548 22 114 1.06E-17 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_0400 02dd36156fb33009c5dd267bba41a71f 424 TIGRFAM TIGR03379 glycerol3P_GlpC: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit 24 421 9.4E-218 T 11-10-2018 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit GO:0009061|GO:0016020 APJL_1123 92fd82be6539a67e9d15550fe4e2b331 396 Pfam PF08007 Cupin superfamily protein 20 301 6.4E-47 T 11-10-2018 IPR003347 JmjC domain APJL_1123 92fd82be6539a67e9d15550fe4e2b331 396 SMART SM00558 104 245 0.0013 T 11-10-2018 IPR003347 JmjC domain APJL_1123 92fd82be6539a67e9d15550fe4e2b331 396 Gene3D G3DSA:2.60.120.650 10 235 3.8E-38 T 11-10-2018 APJL_1123 92fd82be6539a67e9d15550fe4e2b331 396 SUPERFAMILY SSF51197 16 296 5.36E-47 T 11-10-2018 APJL_0477 0967108458b95e3e6113521a1d7514b2 323 Gene3D G3DSA:3.40.50.2300 131 274 6.8E-97 T 11-10-2018 APJL_0477 0967108458b95e3e6113521a1d7514b2 323 Pfam PF13407 Periplasmic binding protein domain 26 294 6.7E-58 T 11-10-2018 IPR025997 Periplasmic binding protein APJL_0477 0967108458b95e3e6113521a1d7514b2 323 Gene3D G3DSA:3.40.50.2300 26 294 6.8E-97 T 11-10-2018 APJL_0477 0967108458b95e3e6113521a1d7514b2 323 SUPERFAMILY SSF53822 24 323 1.67E-68 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_0737 0d2fa8f2c22ef823820e17daf15cf422 103 Gene3D G3DSA:3.30.780.10 23 103 2.3E-32 T 11-10-2018 APJL_0737 0d2fa8f2c22ef823820e17daf15cf422 103 PIRSF PIRSF037511 1 103 2.7E-32 T 11-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 APJL_0737 0d2fa8f2c22ef823820e17daf15cf422 103 Pfam PF01253 Translation initiation factor SUI1 27 97 8.4E-17 T 11-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 APJL_0737 0d2fa8f2c22ef823820e17daf15cf422 103 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 3 103 1.4E-36 T 11-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 APJL_0737 0d2fa8f2c22ef823820e17daf15cf422 103 SUPERFAMILY SSF55159 4 99 3.66E-24 T 11-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 APJL_2014 d7ac5b7cf9e350c4f6c0168b0c5d0287 202 SUPERFAMILY SSF46689 10 80 4.94E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_2014 d7ac5b7cf9e350c4f6c0168b0c5d0287 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 30 67 3.4E-13 T 11-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 APJL_2014 d7ac5b7cf9e350c4f6c0168b0c5d0287 202 Gene3D G3DSA:1.10.357.10 14 201 6.0E-53 T 11-10-2018 APJL_2014 d7ac5b7cf9e350c4f6c0168b0c5d0287 202 ProSitePatterns PS01081 TetR-type HTH domain signature. 33 63 - T 11-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site APJL_2014 d7ac5b7cf9e350c4f6c0168b0c5d0287 202 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 3 202 36.458 T 11-10-2018 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 APJL_1480 64b16599c68d602343a8a2bb074eab58 238 Pfam PF04402 Protein of unknown function (DUF541) 39 233 4.5E-18 T 11-10-2018 IPR007497 Protein of unknown function DUF541 APJL_1480 64b16599c68d602343a8a2bb074eab58 238 Gene3D G3DSA:3.30.110.170 44 231 3.9E-9 T 11-10-2018 APJL_1480 64b16599c68d602343a8a2bb074eab58 238 Gene3D G3DSA:3.30.70.2970 47 148 3.9E-9 T 11-10-2018 APJL_0097 37c5801cb356fe716e30236388320ec5 611 Pfam PF00920 Dehydratase family 34 604 1.1E-218 T 11-10-2018 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APJL_0097 37c5801cb356fe716e30236388320ec5 611 Gene3D G3DSA:3.50.30.80 421 573 1.5E-53 T 11-10-2018 APJL_0097 37c5801cb356fe716e30236388320ec5 611 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 607 1.0E-263 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APJL_0097 37c5801cb356fe716e30236388320ec5 611 SUPERFAMILY SSF52016 421 608 4.08E-59 T 11-10-2018 APJL_0097 37c5801cb356fe716e30236388320ec5 611 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APJL_0097 37c5801cb356fe716e30236388320ec5 611 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 11-10-2018 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APJL_0097 37c5801cb356fe716e30236388320ec5 611 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 607 44.974 T 11-10-2018 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APJL_0097 37c5801cb356fe716e30236388320ec5 611 SUPERFAMILY SSF143975 5 420 6.54E-135 T 11-10-2018 IPR037237 IlvD/EDD, N-terminal domain KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 SMART SM00382 99 238 2.6E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 334 382 1.6E-28 T 11-10-2018 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 Gene3D G3DSA:1.10.10.60 325 382 2.4E-27 T 11-10-2018 APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 SUPERFAMILY SSF52540 79 315 1.27E-55 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 Gene3D G3DSA:3.40.50.300 65 244 1.7E-52 T 11-10-2018 APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 103 116 - T 11-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 287 296 - T 11-10-2018 IPR025944 Sigma-54 interaction domain, conserved site APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 Gene3D G3DSA:1.10.8.60 245 310 8.5E-20 T 11-10-2018 APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 Pfam PF00158 Sigma-54 interaction domain 79 240 1.0E-51 T 11-10-2018 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 APJL_0803 2bee04ba92930cf1796fe69a0fc9bbe3 382 SUPERFAMILY SSF46689 328 381 6.57E-10 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0656 353a6c4205a7d424913eb6ab464a2c81 230 Pfam PF14335 Domain of unknown function (DUF4391) 11 224 1.5E-44 T 11-10-2018 IPR025503 Protein of unknown function DUF4391 APJL_2067 c59ff60f83a51669b86111060f5252e9 105 Pfam PF10084 Uncharacterized protein conserved in bacteria (DUF2322) 3 101 2.0E-39 T 11-10-2018 IPR016755 Uncharacterised conserved protein UCP019302 APJL_2067 c59ff60f83a51669b86111060f5252e9 105 PIRSF PIRSF019302 1 105 9.4E-43 T 11-10-2018 IPR016755 Uncharacterised conserved protein UCP019302 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 TIGRFAM TIGR00492 alr: alanine racemase 3 373 2.4E-118 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 SUPERFAMILY SSF51419 8 251 5.52E-59 T 11-10-2018 IPR029066 PLP-binding barrel APJL_0260 60cee6c42459df7416787ba8d7bee832 374 SUPERFAMILY SSF50621 244 372 1.12E-44 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 Hamap MF_01201 Alanine racemase. 1 374 33.73 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 SMART SM01005 250 374 1.5E-65 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 Pfam PF01168 Alanine racemase, N-terminal domain 8 237 1.2E-67 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 Gene3D G3DSA:3.20.20.10 10 235 6.0E-114 T 11-10-2018 IPR029066 PLP-binding barrel APJL_0260 60cee6c42459df7416787ba8d7bee832 374 PRINTS PR00992 Alanine racemase signature 61 79 2.0E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 PRINTS PR00992 Alanine racemase signature 356 369 2.0E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 PRINTS PR00992 Alanine racemase signature 283 298 2.0E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 PRINTS PR00992 Alanine racemase signature 210 237 2.0E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 PRINTS PR00992 Alanine racemase signature 266 281 2.0E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 PRINTS PR00992 Alanine racemase signature 26 42 2.0E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 PRINTS PR00992 Alanine racemase signature 304 321 2.0E-54 T 11-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 Gene3D G3DSA:2.40.37.10 8 369 6.0E-114 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APJL_0260 60cee6c42459df7416787ba8d7bee832 374 Pfam PF00842 Alanine racemase, C-terminal domain 250 369 1.4E-39 T 11-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0131 05505bebaa7fe676f08e2965a83b669f 344 Gene3D G3DSA:3.40.50.300 99 270 4.0E-52 T 11-10-2018 APJL_0131 05505bebaa7fe676f08e2965a83b669f 344 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 71 329 1.9E-94 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 APJL_0131 05505bebaa7fe676f08e2965a83b669f 344 SUPERFAMILY SSF52540 110 333 5.58E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0131 05505bebaa7fe676f08e2965a83b669f 344 Gene3D G3DSA:2.40.50.140 33 97 9.4E-23 T 11-10-2018 APJL_0131 05505bebaa7fe676f08e2965a83b669f 344 Hamap MF_01820 Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 38 335 37.449 T 11-10-2018 IPR004881 Ribosome biogenesis GTPase RsgA GO:0003924|GO:0005525 APJL_0131 05505bebaa7fe676f08e2965a83b669f 344 Gene3D G3DSA:1.10.40.50 271 344 5.9E-25 T 11-10-2018 APJL_0131 05505bebaa7fe676f08e2965a83b669f 344 Pfam PF03193 RsgA GTPase 96 271 5.0E-58 T 11-10-2018 IPR010914 RsgA GTPase domain GO:0003924|GO:0005525 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 10 29 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 217 229 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 125 142 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 244 266 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 97 113 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 181 198 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 143 161 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 163 179 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 35 48 6.4E-82 T 11-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 ProSitePatterns PS00433 Phosphofructokinase signature. 248 266 - T 11-10-2018 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 7 305 9.8E-126 T 11-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 Gene3D G3DSA:3.40.50.460 147 256 1.9E-113 T 11-10-2018 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 SUPERFAMILY SSF53784 3 314 2.88E-116 T 11-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 PIRSF PIRSF000532 4 324 8.2E-127 T 11-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 5 324 46.114 T 11-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 Gene3D G3DSA:3.40.50.450 7 291 1.9E-113 T 11-10-2018 APJL_1143 8c64742b214531d11333a65ff74cc49c 324 Pfam PF00365 Phosphofructokinase 7 280 6.5E-108 T 11-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 Gene3D G3DSA:3.10.20.30 3 106 1.3E-36 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 Gene3D G3DSA:1.10.1060.10 107 243 3.7E-48 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 SUPERFAMILY SSF46548 108 227 8.55E-28 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 148 159 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 228 6.1E-98 T 11-10-2018 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 8 111 7.9E-34 T 11-10-2018 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 Pfam PF13183 4Fe-4S dicluster domain 145 218 4.7E-12 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 11-10-2018 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 APJL_1555 d44d81c5bf824c739a7d06a55999626a 244 SUPERFAMILY SSF54292 6 106 3.53E-32 T 11-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 APJL_0321 416f26265b633f61a65ff903fb979cf0 348 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 44 333 7.2E-102 T 11-10-2018 IPR006507 Uncharacterised protein family UPF0283 APJL_0321 416f26265b633f61a65ff903fb979cf0 348 Pfam PF05128 Domain of unknown function (DUF697) 175 333 6.6E-54 T 11-10-2018 IPR021147 Protein of unknown function DUF697 APJL_0321 416f26265b633f61a65ff903fb979cf0 348 Hamap MF_01085 UPF0283 membrane protein YcjF [ycjF]. 12 339 35.678 T 11-10-2018 IPR006507 Uncharacterised protein family UPF0283 APJL_0567 510e09521fa645b27f54d34e076e3e2e 196 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 90 127 - T 11-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 APJL_0567 510e09521fa645b27f54d34e076e3e2e 196 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 44 186 47.418 T 11-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 APJL_0567 510e09521fa645b27f54d34e076e3e2e 196 Gene3D G3DSA:3.40.140.10 28 196 3.9E-61 T 11-10-2018 APJL_0567 510e09521fa645b27f54d34e076e3e2e 196 SUPERFAMILY SSF53927 36 190 1.61E-56 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APJL_0567 510e09521fa645b27f54d34e076e3e2e 196 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 38 138 1.6E-29 T 11-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 29 315 51.773 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 Gene3D G3DSA:1.20.140.160 171 314 6.8E-16 T 11-10-2018 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 110 123 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 283 309 - T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 81 312 1.6E-31 T 11-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 Pfam PF04545 Sigma-70, region 4 260 310 1.3E-15 T 11-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 Gene3D G3DSA:1.10.601.10 46 158 9.6E-28 T 11-10-2018 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 PRINTS PR00046 Major sigma-70 factor signature 298 309 5.0E-18 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 PRINTS PR00046 Major sigma-70 factor signature 110 123 5.0E-18 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 PRINTS PR00046 Major sigma-70 factor signature 264 276 5.0E-18 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 PRINTS PR00046 Major sigma-70 factor signature 283 298 5.0E-18 T 11-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 SUPERFAMILY SSF88946 44 155 1.96E-40 T 11-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 Pfam PF04542 Sigma-70 region 2 86 155 1.7E-16 T 11-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 47 314 3.6E-125 T 11-10-2018 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 Pfam PF00140 Sigma-70 factor, region 1.2 49 73 2.0E-5 T 11-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 APJL_1872 1cfff418fd6e9eb5ca3c54796f7fa5cc 316 SUPERFAMILY SSF88659 223 313 4.67E-18 T 11-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 SUPERFAMILY SSF51905 4 430 1.42E-47 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 14 33 9.3E-12 T 11-10-2018 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 9.3E-12 T 11-10-2018 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 189 207 9.3E-12 T 11-10-2018 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 Gene3D G3DSA:3.90.700.10 236 352 1.3E-63 T 11-10-2018 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 SUPERFAMILY SSF46977 443 530 1.8E-10 T 11-10-2018 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 Gene3D G3DSA:1.20.58.100 445 527 5.2E-9 T 11-10-2018 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 Pfam PF00890 FAD binding domain 13 396 3.4E-34 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 13 35 1.5E-8 T 11-10-2018 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 1.5E-8 T 11-10-2018 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 522 532 1.5E-8 T 11-10-2018 APJL_0863 261b387fe07fe101e7f8d45b0fc04525 532 Gene3D G3DSA:3.50.50.60 16 403 1.3E-63 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 SUPERFAMILY SSF100920 383 539 8.37E-62 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 Gene3D G3DSA:3.30.420.40 179 365 3.6E-160 T 11-10-2018 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 Gene3D G3DSA:3.30.420.40 5 378 3.6E-160 T 11-10-2018 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 Gene3D G3DSA:1.20.1270.10 523 602 4.6E-24 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 SUPERFAMILY SSF100934 533 606 1.02E-6 T 11-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 SUPERFAMILY SSF53067 1 181 3.77E-63 T 11-10-2018 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 Pfam PF00012 Hsp70 protein 4 601 5.5E-257 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 SUPERFAMILY SSF53067 186 381 1.02E-64 T 11-10-2018 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 31 43 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 333 349 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 3 16 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 387 406 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 468 484 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 364 384 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 137 157 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 53 61 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 PRINTS PR00301 70kDa heat shock protein signature 197 207 1.1E-79 T 11-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 Gene3D G3DSA:3.90.640.10 228 315 3.6E-160 T 11-10-2018 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 Gene3D G3DSA:2.60.34.10 382 522 2.3E-66 T 11-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 2.4E-289 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 629 35.715 T 11-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APJL_1953 7663f0b16f6b4926c81f0632eb5594cb 633 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 11-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 325 337 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 SUPERFAMILY SSF54211 258 348 1.64E-30 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 232 245 - T 11-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 SUPERFAMILY SSF56784 2 155 1.52E-36 T 11-10-2018 IPR036412 HAD-like superfamily APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 202 343 4.2E-66 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 Gene3D G3DSA:3.30.230.40 261 361 7.8E-36 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 Gene3D G3DSA:3.30.230.40 163 260 4.4E-39 T 11-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 3 161 1.8E-79 T 11-10-2018 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 Pfam PF08645 Polynucleotide kinase 3 phosphatase 9 133 2.1E-4 T 11-10-2018 IPR013954 Polynucleotide kinase 3 phosphatase Reactome: R-HSA-5649702 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 145 2.7E-51 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 Gene3D G3DSA:3.40.50.1000 1 162 3.7E-43 T 11-10-2018 IPR023214 HAD superfamily APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 173 361 36.592 T 11-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 2 361 50.051 T 11-10-2018 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 SUPERFAMILY SSF54211 173 257 7.21E-33 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_2073 627dced26a03e5012e3e3fcd9099d545 361 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 147 4.1E-25 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APJL_0070 4710bba982ddf0c13cf682628cd13689 210 SUPERFAMILY SSF53474 61 183 2.05E-11 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0070 4710bba982ddf0c13cf682628cd13689 210 Gene3D G3DSA:3.40.50.1820 30 125 6.1E-8 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0867 66778f667cbf81cb49aa14b44bcfc7aa 409 Pfam PF03222 Tryptophan/tyrosine permease family 16 375 1.7E-16 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 APJL_0867 66778f667cbf81cb49aa14b44bcfc7aa 409 TIGRFAM TIGR00814 stp: serine transporter 7 398 1.2E-158 T 11-10-2018 IPR004694 Hydroxy amino acid transporter GO:0006865|GO:0015171|GO:0016021 APJL_0641 08a71d2c8d97324f63d77fc1c67e23a7 295 Pfam PF00483 Nucleotidyl transferase 3 269 8.1E-27 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APJL_0641 08a71d2c8d97324f63d77fc1c67e23a7 295 Gene3D G3DSA:3.90.550.10 1 294 2.6E-86 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0641 08a71d2c8d97324f63d77fc1c67e23a7 295 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 1 269 7.3E-117 T 11-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 APJL_0641 08a71d2c8d97324f63d77fc1c67e23a7 295 SUPERFAMILY SSF53448 1 281 3.38E-62 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1624 c57d43fb3992ef122f460356c349e66b 175 Gene3D G3DSA:3.40.50.360 1 175 5.8E-15 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1624 c57d43fb3992ef122f460356c349e66b 175 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 APJL_1624 c57d43fb3992ef122f460356c349e66b 175 Pfam PF12724 Flavodoxin domain 4 152 3.1E-49 T 11-10-2018 IPR026816 Flavodoxin domain APJL_1624 c57d43fb3992ef122f460356c349e66b 175 SUPERFAMILY SSF52218 2 167 1.78E-29 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_0805 98dd14e8deba9ac5138be053b05383da 536 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 5 536 8.4E-284 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 Gene3D G3DSA:3.90.228.20 224 519 2.0E-233 T 11-10-2018 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 261 276 - T 11-10-2018 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 Hamap MF_00453 Phosphoenolpyruvate carboxykinase (ATP) [pckA]. 13 536 55.285 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 SUPERFAMILY SSF68923 6 223 3.31E-88 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 SUPERFAMILY SSF53795 225 536 6.41E-130 T 11-10-2018 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 Gene3D G3DSA:3.40.449.10 56 223 2.0E-233 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 Gene3D G3DSA:3.40.449.10 3 44 9.5E-8 T 11-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 Pfam PF01293 Phosphoenolpyruvate carboxykinase 19 486 1.4E-212 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 Gene3D G3DSA:2.170.8.10 45 338 2.0E-233 T 11-10-2018 APJL_0805 98dd14e8deba9ac5138be053b05383da 536 PIRSF PIRSF006294 2 536 8.3E-233 T 11-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 APJL_0254 8bc55d6a54b8730719aa7945952cc823 316 Gene3D G3DSA:3.40.50.1100 43 145 1.4E-125 T 11-10-2018 APJL_0254 8bc55d6a54b8730719aa7945952cc823 316 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 299 3.2E-68 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APJL_0254 8bc55d6a54b8730719aa7945952cc823 316 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 311 2.4E-143 T 11-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APJL_0254 8bc55d6a54b8730719aa7945952cc823 316 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 11-10-2018 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 APJL_0254 8bc55d6a54b8730719aa7945952cc823 316 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 311 2.9E-134 T 11-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 APJL_0254 8bc55d6a54b8730719aa7945952cc823 316 Gene3D G3DSA:3.40.50.1100 11 306 1.4E-125 T 11-10-2018 APJL_0254 8bc55d6a54b8730719aa7945952cc823 316 SUPERFAMILY SSF53686 4 309 7.07E-95 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APJL_1203 d573d909da8738729deaa321ab97fce4 601 Pfam PF00999 Sodium/hydrogen exchanger family 15 376 3.8E-64 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APJL_1203 d573d909da8738729deaa321ab97fce4 601 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 17 288 6.5E-77 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 APJL_1203 d573d909da8738729deaa321ab97fce4 601 Gene3D G3DSA:1.20.1530.20 5 384 2.3E-78 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APJL_1203 d573d909da8738729deaa321ab97fce4 601 SUPERFAMILY SSF51735 406 535 1.18E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1203 d573d909da8738729deaa321ab97fce4 601 Pfam PF02254 TrkA-N domain 407 517 5.4E-24 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APJL_1203 d573d909da8738729deaa321ab97fce4 601 Gene3D G3DSA:3.40.50.720 402 565 2.5E-34 T 11-10-2018 APJL_0910 cfd319cd78785842b23325164755129d 512 Gene3D G3DSA:1.20.1250.20 11 450 3.7E-43 T 11-10-2018 APJL_0910 cfd319cd78785842b23325164755129d 512 SUPERFAMILY SSF103473 13 443 1.57E-50 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_0910 cfd319cd78785842b23325164755129d 512 Pfam PF07690 Major Facilitator Superfamily 46 400 6.3E-35 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_1155 eeb42559cccd9f2339db46acc9c33781 381 SUPERFAMILY SSF54106 338 380 1.44E-9 T 11-10-2018 APJL_1155 eeb42559cccd9f2339db46acc9c33781 381 Gene3D G3DSA:3.10.350.10 334 381 4.6E-13 T 11-10-2018 IPR036779 LysM domain superfamily APJL_1155 eeb42559cccd9f2339db46acc9c33781 381 SMART SM00646 88 247 1.4E-65 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APJL_1155 eeb42559cccd9f2339db46acc9c33781 381 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 27 247 3.5E-49 T 11-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 APJL_1155 eeb42559cccd9f2339db46acc9c33781 381 SUPERFAMILY SSF53187 25 249 7.22E-51 T 11-10-2018 APJL_1155 eeb42559cccd9f2339db46acc9c33781 381 Gene3D G3DSA:3.40.630.40 18 257 2.5E-70 T 11-10-2018 APJL_1155 eeb42559cccd9f2339db46acc9c33781 381 Pfam PF01476 LysM domain 339 380 1.5E-11 T 11-10-2018 IPR018392 LysM domain APJL_1155 eeb42559cccd9f2339db46acc9c33781 381 SMART SM00257 338 381 6.1E-12 T 11-10-2018 IPR018392 LysM domain APJL_1741 3d1e6c5959e26bd03965ef262360734b 468 Gene3D G3DSA:1.25.40.10 30 210 1.2E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1741 3d1e6c5959e26bd03965ef262360734b 468 Pfam PF04575 Protein of unknown function (DUF560) 179 467 4.2E-80 T 11-10-2018 IPR007655 Protein of unknown function DUF560 APJL_1741 3d1e6c5959e26bd03965ef262360734b 468 Pfam PF14559 Tetratricopeptide repeat 104 158 1.0E-5 T 11-10-2018 APJL_1741 3d1e6c5959e26bd03965ef262360734b 468 SUPERFAMILY SSF48452 94 188 5.38E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0153 208d7e96b0f9b797c1063006dc1af5f6 257 PIRSF PIRSF009437 1 255 1.6E-101 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 APJL_0153 208d7e96b0f9b797c1063006dc1af5f6 257 SMART SM00900 144 241 1.8E-27 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 APJL_0153 208d7e96b0f9b797c1063006dc1af5f6 257 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 6 249 1.5E-93 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 APJL_0153 208d7e96b0f9b797c1063006dc1af5f6 257 Pfam PF04205 FMN-binding domain 144 235 1.6E-12 T 11-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 APJL_0153 208d7e96b0f9b797c1063006dc1af5f6 257 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 7 253 35.39 T 11-10-2018 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0010181|GO:0016021|GO:0016655 APJL_1885 80ed212ab640f9b2854f2dd7ca2078b9 244 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 45 244 4.3E-50 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 APJL_1885 80ed212ab640f9b2854f2dd7ca2078b9 244 Gene3D G3DSA:3.40.50.620 14 244 4.0E-66 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1885 80ed212ab640f9b2854f2dd7ca2078b9 244 SUPERFAMILY SSF52402 17 206 2.09E-42 T 11-10-2018 APJL_1885 80ed212ab640f9b2854f2dd7ca2078b9 244 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 48 242 3.7E-74 T 11-10-2018 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8 APJL_1885 80ed212ab640f9b2854f2dd7ca2078b9 244 PIRSF PIRSF000857 10 244 3.3E-76 T 11-10-2018 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 APJL_1885 80ed212ab640f9b2854f2dd7ca2078b9 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 46 218 1.3E-39 T 11-10-2018 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824 Reactome: R-HSA-196843 APJL_1063 95fc88e4de4522beaaa551d5be113882 288 SUPERFAMILY SSF103481 45 144 3.92E-9 T 11-10-2018 APJL_1063 95fc88e4de4522beaaa551d5be113882 288 Pfam PF00892 EamA-like transporter family 3 141 2.6E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_1063 95fc88e4de4522beaaa551d5be113882 288 TIGRFAM TIGR00688 rarD: protein RarD 3 256 3.2E-59 T 11-10-2018 IPR004626 RarD protein GO:0005887 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 5 57 2.7E-18 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 3 21 5.8E-46 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 21 42 5.8E-46 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 86 102 5.8E-46 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 50 74 5.8E-46 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 113 135 5.8E-46 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 Pfam PF01467 Cytidylyltransferase-like 6 134 8.2E-19 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 SUPERFAMILY SSF52374 4 157 5.09E-42 T 11-10-2018 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 3 158 32.091 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 Gene3D G3DSA:3.40.50.620 1 158 1.4E-54 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1152 d98fd4c9fea990fad58826fe142e7fb6 158 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 5 157 8.2E-57 T 11-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 SUPERFAMILY SSF51984 20 105 1.7E-28 T 11-10-2018 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 Gene3D G3DSA:3.40.1190.10 107 320 1.3E-84 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 SUPERFAMILY SSF53623 104 321 1.7E-71 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 20 469 7.4E-185 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 412 1.8E-21 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 Pfam PF08245 Mur ligase middle domain 123 303 4.0E-29 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 SUPERFAMILY SSF53244 322 470 6.64E-46 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 Gene3D G3DSA:3.40.50.720 19 106 5.2E-34 T 11-10-2018 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 Pfam PF01225 Mur ligase family, catalytic domain 20 117 2.0E-28 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 Gene3D G3DSA:3.90.190.20 321 474 5.7E-47 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0020 e1f0d35177a2e094c54c693bb7e91eb9 475 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 18 475 42.807 T 11-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_1720 d896b995754a3b1c7563f4bddf78f4e0 429 Gene3D G3DSA:1.20.1250.20 8 232 2.5E-54 T 11-10-2018 APJL_1720 d896b995754a3b1c7563f4bddf78f4e0 429 SUPERFAMILY SSF103473 8 423 1.28E-30 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_1720 d896b995754a3b1c7563f4bddf78f4e0 429 Pfam PF07690 Major Facilitator Superfamily 22 381 8.0E-17 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_1720 d896b995754a3b1c7563f4bddf78f4e0 429 Gene3D G3DSA:1.20.1250.20 233 424 6.3E-45 T 11-10-2018 APJL_1720 d896b995754a3b1c7563f4bddf78f4e0 429 TIGRFAM TIGR00885 fucP: L-fucose:H+ symporter permease 10 422 1.5E-191 T 11-10-2018 IPR005275 L-fucose permease FucP GO:0015150|GO:0015756 APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 SUPERFAMILY SSF69304 159 422 1.05E-48 T 11-10-2018 APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 23 421 7.9E-139 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 Pfam PF04052 TolB amino-terminal domain 29 126 1.2E-28 T 11-10-2018 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 Gene3D G3DSA:2.120.10.30 167 426 8.8E-87 T 11-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 Hamap MF_00671 Tol-Pal system protein TolB [tolB]. 9 420 43.539 T 11-10-2018 IPR014167 Tol-Pal system protein TolB GO:0017038|GO:0042597 APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 Pfam PF07676 WD40-like Beta Propeller Repeat 244 272 3.0E-11 T 11-10-2018 IPR011659 WD40-like Beta Propeller APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 Pfam PF07676 WD40-like Beta Propeller Repeat 363 390 1.5E-4 T 11-10-2018 IPR011659 WD40-like Beta Propeller APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 Pfam PF07676 WD40-like Beta Propeller Repeat 282 316 1.3E-14 T 11-10-2018 IPR011659 WD40-like Beta Propeller APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 Pfam PF07676 WD40-like Beta Propeller Repeat 203 221 0.008 T 11-10-2018 IPR011659 WD40-like Beta Propeller APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 Gene3D G3DSA:3.40.50.10070 27 166 3.4E-43 T 11-10-2018 IPR036752 TolB, N-terminal domain superfamily GO:0015031|GO:0042597 APJL_0316 1350a9eb689449d73f29f75d603d82b7 426 SUPERFAMILY SSF52964 34 163 5.75E-35 T 11-10-2018 APJL_1584 63716262729b835367934f9c5800db89 355 Pfam PF07690 Major Facilitator Superfamily 12 340 6.4E-19 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_1584 63716262729b835367934f9c5800db89 355 SUPERFAMILY SSF103473 9 352 4.84E-30 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_1584 63716262729b835367934f9c5800db89 355 Gene3D G3DSA:1.20.1250.20 6 354 7.0E-26 T 11-10-2018 APJL_0360 88617c47732d202a461f960d82da1c67 315 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 252 265 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APJL_0360 88617c47732d202a461f960d82da1c67 315 Gene3D G3DSA:3.40.1190.20 7 315 1.1E-91 T 11-10-2018 IPR029056 Ribokinase-like APJL_0360 88617c47732d202a461f960d82da1c67 315 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 7 311 7.2E-105 T 11-10-2018 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 APJL_0360 88617c47732d202a461f960d82da1c67 315 Pfam PF00294 pfkB family carbohydrate kinase 18 297 1.6E-63 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APJL_0360 88617c47732d202a461f960d82da1c67 315 SUPERFAMILY SSF53613 8 295 5.92E-71 T 11-10-2018 IPR029056 Ribokinase-like APJL_0360 88617c47732d202a461f960d82da1c67 315 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 7 311 3.6E-104 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 APJL_0360 88617c47732d202a461f960d82da1c67 315 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 41 65 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APJL_0360 88617c47732d202a461f960d82da1c67 315 PIRSF PIRSF000535 4 314 1.8E-112 T 11-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 APJL_1581 c1b59731f091dc827eb25895aeeb6a55 292 SUPERFAMILY SSF160355 31 253 4.71E-36 T 11-10-2018 APJL_1581 c1b59731f091dc827eb25895aeeb6a55 292 Gene3D G3DSA:3.30.1890.10 30 253 2.1E-43 T 11-10-2018 APJL_1475 c79a5b14378bd216bfe74ce912a9acd7 219 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 215 2.5E-66 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APJL_1475 c79a5b14378bd216bfe74ce912a9acd7 219 Gene3D G3DSA:3.40.50.1360 7 210 2.2E-77 T 11-10-2018 APJL_1475 c79a5b14378bd216bfe74ce912a9acd7 219 Gene3D G3DSA:3.30.70.260 125 196 2.2E-77 T 11-10-2018 APJL_1475 c79a5b14378bd216bfe74ce912a9acd7 219 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 214 2.9E-57 T 11-10-2018 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APJL_1475 c79a5b14378bd216bfe74ce912a9acd7 219 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 218 33.366 T 11-10-2018 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 APJL_1475 c79a5b14378bd216bfe74ce912a9acd7 219 SUPERFAMILY SSF100950 2 147 1.63E-45 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_1475 c79a5b14378bd216bfe74ce912a9acd7 219 SUPERFAMILY SSF75445 129 199 3.27E-23 T 11-10-2018 APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 Gene3D G3DSA:3.30.465.10 199 291 2.0E-29 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 Pfam PF00571 CBS domain 68 126 4.2E-9 T 11-10-2018 IPR000644 CBS domain APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 Pfam PF00571 CBS domain 140 189 9.4E-5 T 11-10-2018 IPR000644 CBS domain APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 SMART SM00116 77 127 0.089 T 11-10-2018 IPR000644 CBS domain APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 SMART SM00116 141 189 0.063 T 11-10-2018 IPR000644 CBS domain APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 SUPERFAMILY SSF54631 64 200 6.95E-31 T 11-10-2018 APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 Gene3D G3DSA:3.10.580.10 47 198 3.9E-53 T 11-10-2018 APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 SMART SM01091 205 283 8.6E-28 T 11-10-2018 IPR005170 Transporter-associated domain APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 Pfam PF03471 Transporter associated domain 206 281 3.1E-21 T 11-10-2018 IPR005170 Transporter-associated domain APJL_0390 74265d9ff06c2b5735779e9b60e852a5 297 SUPERFAMILY SSF56176 203 285 8.18E-22 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APJL_1969 930d7133011f87134a34367ceb0e5cd2 590 SUPERFAMILY SSF88713 47 252 1.46E-36 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APJL_1969 930d7133011f87134a34367ceb0e5cd2 590 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 303 388 6.4E-37 T 11-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal APJL_1969 930d7133011f87134a34367ceb0e5cd2 590 Pfam PF14883 Hypothetical glycosyl hydrolase family 13 470 563 1.0E-13 T 11-10-2018 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal APJL_1969 930d7133011f87134a34367ceb0e5cd2 590 Gene3D G3DSA:3.20.20.80 437 588 5.8E-23 T 11-10-2018 APJL_1969 930d7133011f87134a34367ceb0e5cd2 590 Gene3D G3DSA:3.20.20.80 291 405 2.4E-37 T 11-10-2018 APJL_1969 930d7133011f87134a34367ceb0e5cd2 590 Pfam PF01522 Polysaccharide deacetylase 86 253 1.4E-25 T 11-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 APJL_1969 930d7133011f87134a34367ceb0e5cd2 590 Gene3D G3DSA:3.20.20.370 25 287 1.6E-72 T 11-10-2018 APJL_1969 930d7133011f87134a34367ceb0e5cd2 590 TIGRFAM TIGR03938 deacetyl_PgaB: poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB 27 444 5.0E-170 T 11-10-2018 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB GO:0016810|GO:0043708 APJL_1814 57c8c9010cafcaa3aec305c48eb9e849 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 11-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1814 57c8c9010cafcaa3aec305c48eb9e849 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 1.3E-30 T 11-10-2018 IPR021131 Ribosomal protein L18e/L15P APJL_1814 57c8c9010cafcaa3aec305c48eb9e849 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.307 T 11-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 APJL_1814 57c8c9010cafcaa3aec305c48eb9e849 144 SUPERFAMILY SSF52080 4 143 3.53E-46 T 11-10-2018 IPR036227 Ribosomal L18e/L15P superfamily APJL_1814 57c8c9010cafcaa3aec305c48eb9e849 144 Gene3D G3DSA:3.100.10.10 67 144 6.4E-14 T 11-10-2018 APJL_1814 57c8c9010cafcaa3aec305c48eb9e849 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 143 1.4E-52 T 11-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1891 9bcea724f16c342e504e5961fa1932ff 381 Gene3D G3DSA:3.20.20.70 2 380 3.1E-123 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1891 9bcea724f16c342e504e5961fa1932ff 381 SUPERFAMILY SSF51395 5 376 3.54E-95 T 11-10-2018 APJL_1891 9bcea724f16c342e504e5961fa1932ff 381 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 73.898 T 11-10-2018 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 APJL_1891 9bcea724f16c342e504e5961fa1932ff 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 11-10-2018 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APJL_1891 9bcea724f16c342e504e5961fa1932ff 381 PIRSF PIRSF000138 1 380 5.8E-121 T 11-10-2018 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 Reactome: R-HSA-9033241 APJL_1891 9bcea724f16c342e504e5961fa1932ff 381 Pfam PF01070 FMN-dependent dehydrogenase 13 375 2.4E-123 T 11-10-2018 IPR000262 FMN-dependent dehydrogenase GO:0016491 Reactome: R-HSA-9033241 APJL_2087 a90e6eb5a75ea4654edb37e62ce784a6 416 Pfam PF02687 FtsX-like permease family 303 409 1.2E-9 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APJL_2087 a90e6eb5a75ea4654edb37e62ce784a6 416 Pfam PF12704 MacB-like periplasmic core domain 25 240 3.7E-11 T 11-10-2018 IPR025857 MacB-like periplasmic core domain APJL_2087 a90e6eb5a75ea4654edb37e62ce784a6 416 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 3 415 2.2E-145 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 APJL_2087 a90e6eb5a75ea4654edb37e62ce784a6 416 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 2 416 9.3E-184 T 11-10-2018 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0016021|GO:0042953|GO:0042954|GO:0044874 APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 SMART SM00861 355 527 1.6E-65 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 Pfam PF02779 Transketolase, pyrimidine binding domain 354 526 5.4E-46 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 SUPERFAMILY SSF52922 535 668 8.77E-44 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 5 334 3.5E-170 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 SUPERFAMILY SSF52518 5 321 3.93E-122 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 Pfam PF02780 Transketolase, C-terminal domain 555 660 2.2E-19 T 11-10-2018 IPR033248 Transketolase, C-terminal domain APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 TIGRFAM TIGR00232 tktlase_bact: transketolase 7 667 0.0 T 11-10-2018 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 Gene3D G3DSA:3.40.50.920 541 668 2.2E-43 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 Gene3D G3DSA:3.40.50.970 327 539 2.3E-81 T 11-10-2018 APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 ProSitePatterns PS00802 Transketolase signature 2. 469 485 - T 11-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 SUPERFAMILY SSF52518 330 527 1.59E-66 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_1003 4bdd5fe8ad79cd4ce5f41f895dcca166 668 Gene3D G3DSA:3.40.50.970 2 326 9.6E-135 T 11-10-2018 APJL_1733 7e775c63b444d0a93ac90690d67f4220 363 SUPERFAMILY SSF56281 35 315 5.46E-23 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APJL_1733 7e775c63b444d0a93ac90690d67f4220 363 Gene3D G3DSA:3.60.15.10 3 363 5.5E-103 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APJL_1733 7e775c63b444d0a93ac90690d67f4220 363 Pfam PF13483 Beta-lactamase superfamily domain 42 290 1.6E-11 T 11-10-2018 APJL_1690 becfe8aeb4918935c6739f9de3542c89 260 SMART SM00062 36 256 1.3E-66 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APJL_1690 becfe8aeb4918935c6739f9de3542c89 260 SUPERFAMILY SSF53850 1 257 2.49E-57 T 11-10-2018 APJL_1690 becfe8aeb4918935c6739f9de3542c89 260 Gene3D G3DSA:3.40.190.10 120 217 1.1E-73 T 11-10-2018 APJL_1690 becfe8aeb4918935c6739f9de3542c89 260 Gene3D G3DSA:3.40.190.10 35 248 1.1E-73 T 11-10-2018 APJL_1690 becfe8aeb4918935c6739f9de3542c89 260 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 37 254 2.1E-54 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APJL_1690 becfe8aeb4918935c6739f9de3542c89 260 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 59 72 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APJL_0448 2bf523d4a92de92798619a5a3a4e6c2d 153 Hamap MF_00042 Ribonuclease H [rnhA]. 1 148 33.042 T 11-10-2018 IPR022892 Ribonuclease HI GO:0004523 APJL_0448 2bf523d4a92de92798619a5a3a4e6c2d 153 Gene3D G3DSA:3.30.420.10 1 153 1.5E-59 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0448 2bf523d4a92de92798619a5a3a4e6c2d 153 SUPERFAMILY SSF53098 1 142 1.77E-57 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0448 2bf523d4a92de92798619a5a3a4e6c2d 153 Pfam PF00075 RNase H 4 140 5.6E-51 T 11-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 APJL_0848 56fa9c2032158e7e92e8ebdd371a62a3 464 Gene3D G3DSA:1.20.1600.10 51 464 6.3E-93 T 11-10-2018 APJL_0848 56fa9c2032158e7e92e8ebdd371a62a3 464 SUPERFAMILY SSF56954 5 464 2.49E-70 T 11-10-2018 APJL_0848 56fa9c2032158e7e92e8ebdd371a62a3 464 Gene3D G3DSA:2.20.200.10 98 352 6.3E-93 T 11-10-2018 APJL_0848 56fa9c2032158e7e92e8ebdd371a62a3 464 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 463 1.4E-67 T 11-10-2018 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0016020|GO:0022857|GO:0055085 APJL_0848 56fa9c2032158e7e92e8ebdd371a62a3 464 Pfam PF02321 Outer membrane efflux protein 63 240 3.6E-14 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APJL_0848 56fa9c2032158e7e92e8ebdd371a62a3 464 Pfam PF02321 Outer membrane efflux protein 280 461 8.6E-24 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APJL_0948 3e23e56a5b6af73a022a0e631263b4b5 214 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 209 25.648 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APJL_0948 3e23e56a5b6af73a022a0e631263b4b5 214 Pfam PF13500 AAA domain 5 192 3.4E-29 T 11-10-2018 APJL_0948 3e23e56a5b6af73a022a0e631263b4b5 214 Gene3D G3DSA:3.40.50.300 1 212 4.0E-57 T 11-10-2018 APJL_0948 3e23e56a5b6af73a022a0e631263b4b5 214 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 175 2.1E-54 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APJL_0948 3e23e56a5b6af73a022a0e631263b4b5 214 PIRSF PIRSF006755 1 214 4.7E-65 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APJL_0948 3e23e56a5b6af73a022a0e631263b4b5 214 SUPERFAMILY SSF52540 1 197 8.73E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 Gene3D G3DSA:3.30.70.360 179 294 2.6E-79 T 11-10-2018 APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 108 145 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 73 82 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 SUPERFAMILY SSF53187 5 379 8.29E-57 T 11-10-2018 APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 SUPERFAMILY SSF55031 179 288 2.54E-21 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 380 62.699 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 Gene3D G3DSA:3.40.630.10 26 362 2.6E-79 T 11-10-2018 APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 Pfam PF07687 Peptidase dimerisation domain 176 286 6.6E-25 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 375 1.9E-136 T 11-10-2018 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 APJL_1101 e4693bee84e5cdfd8beb772cf51ec044 380 Pfam PF01546 Peptidase family M20/M25/M40 74 376 2.0E-32 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1342 12.303 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:2.40.50.150 834 955 2.4E-44 T 11-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:3.90.1100.10 648 714 1.3E-20 T 11-10-2018 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 235 4.7E-8 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Pfam PF04561 RNA polymerase Rpb2, domain 2 339 454 8.3E-18 T 11-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Pfam PF04563 RNA polymerase beta subunit 26 500 6.2E-49 T 11-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1064 1076 - T 11-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:2.40.270.10 1034 1242 5.2E-89 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Pfam PF00562 RNA polymerase Rpb2, domain 6 718 1264 9.0E-156 T 11-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:2.40.270.10 791 833 6.2E-7 T 11-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:3.90.1800.10 1252 1305 8.2E-11 T 11-10-2018 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:3.90.1110.10 157 272 1.4E-28 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:2.40.50.100 715 789 7.6E-31 T 11-10-2018 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.2E-29 T 11-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:3.90.1110.10 315 441 3.9E-35 T 11-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 SUPERFAMILY SSF64484 11 1340 0.0 T 11-10-2018 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:3.90.1100.10 442 627 5.9E-69 T 11-10-2018 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Gene3D G3DSA:3.90.1100.10 19 156 2.7E-48 T 11-10-2018 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1339 0.0 T 11-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 657 3.4E-22 T 11-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1762 5e59253b9026570a8d2d20f643f61aed 1342 Pfam PF04560 RNA polymerase Rpb2, domain 7 1266 1340 8.2E-27 T 11-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 2 348 2.0E-182 T 11-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 185 347 1.6E-63 T 11-10-2018 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 152 169 - T 11-10-2018 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 SUPERFAMILY SSF54197 180 346 1.11E-53 T 11-10-2018 IPR036265 HIT-like superfamily APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 5 177 1.5E-70 T 11-10-2018 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 Gene3D G3DSA:3.30.428.10 46 176 1.0E-56 T 11-10-2018 IPR036265 HIT-like superfamily APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 PIRSF PIRSF000808 1 343 9.2E-122 T 11-10-2018 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0008108|GO:0008270|GO:0033499 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 Gene3D G3DSA:3.30.428.10 177 349 1.4E-67 T 11-10-2018 IPR036265 HIT-like superfamily APJL_1011 da4ae3771d13279b052af40d9d47b8aa 349 SUPERFAMILY SSF54197 4 178 5.83E-72 T 11-10-2018 IPR036265 HIT-like superfamily APJL_0572 21ceacf55de246bb836bc04aca10f629 443 SUPERFAMILY SSF140570 120 282 2.48E-77 T 11-10-2018 IPR036141 MukF, middle domain superfamily APJL_0572 21ceacf55de246bb836bc04aca10f629 443 Gene3D G3DSA:1.10.10.10 25 119 7.4E-46 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0572 21ceacf55de246bb836bc04aca10f629 443 PIRSF PIRSF018282 2 441 3.4E-246 T 11-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 APJL_0572 21ceacf55de246bb836bc04aca10f629 443 Pfam PF03882 MukF winged-helix domain 4 118 2.0E-53 T 11-10-2018 IPR033439 Chromosome partition protein MukF, winged-helix domain APJL_0572 21ceacf55de246bb836bc04aca10f629 443 Pfam PF17193 MukF C-terminal domain 284 441 5.9E-74 T 11-10-2018 IPR033441 Chromosome partition protein MukF, C-terminal domain APJL_0572 21ceacf55de246bb836bc04aca10f629 443 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 2 441 56.11 T 11-10-2018 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 APJL_0572 21ceacf55de246bb836bc04aca10f629 443 Gene3D G3DSA:1.20.58.590 120 312 2.8E-84 T 11-10-2018 IPR036141 MukF, middle domain superfamily APJL_0572 21ceacf55de246bb836bc04aca10f629 443 Pfam PF17192 MukF middle domain 122 282 2.5E-83 T 11-10-2018 IPR033440 Chromosome partition protein MukF, middle domain APJL_0572 21ceacf55de246bb836bc04aca10f629 443 SUPERFAMILY SSF46785 9 119 1.5E-45 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0572 21ceacf55de246bb836bc04aca10f629 443 Gene3D G3DSA:1.10.225.40 354 443 5.9E-41 T 11-10-2018 IPR038198 MukF, C-terminal domain superfamily APJL_0085 8c6d1f0f89f0a323a090bef3a3d5f604 250 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 243 4.5E-116 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 APJL_0085 8c6d1f0f89f0a323a090bef3a3d5f604 250 SUPERFAMILY SSF53448 1 249 9.01E-64 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0085 8c6d1f0f89f0a323a090bef3a3d5f604 250 Pfam PF02348 Cytidylyltransferase 5 223 1.5E-68 T 11-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 APJL_0085 8c6d1f0f89f0a323a090bef3a3d5f604 250 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 250 45.748 T 11-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 APJL_0085 8c6d1f0f89f0a323a090bef3a3d5f604 250 Gene3D G3DSA:3.90.550.10 1 250 2.8E-93 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 561 621 1.4E-10 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 563 619 1.1E-6 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 Gene3D G3DSA:3.40.50.300 337 656 7.5E-84 T 11-10-2018 APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 SMART SM00382 368 561 2.1E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 SUPERFAMILY SSF161098 77 269 3.14E-19 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 SUPERFAMILY SSF52540 339 582 1.22E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 Pfam PF00005 ABC transporter 359 511 1.3E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 273 1.1E-19 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0861 b1bbba13197237227dbb6e7a3b7cf311 657 Gene3D G3DSA:1.10.3720.10 72 279 1.5E-14 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1684 7f60a27867b6f13ea94a076643145689 84 Pfam PF00137 ATP synthase subunit C 10 72 1.1E-8 T 11-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 APJL_1684 7f60a27867b6f13ea94a076643145689 84 Hamap MF_01396 ATP synthase subunit c [atpH]. 9 74 14.163 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1684 7f60a27867b6f13ea94a076643145689 84 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.8E-5 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1684 7f60a27867b6f13ea94a076643145689 84 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.8E-5 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1684 7f60a27867b6f13ea94a076643145689 84 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.8E-5 T 11-10-2018 IPR000454 ATP synthase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1684 7f60a27867b6f13ea94a076643145689 84 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 19 76 9.0E-31 T 11-10-2018 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 APJL_1684 7f60a27867b6f13ea94a076643145689 84 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 11-10-2018 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1684 7f60a27867b6f13ea94a076643145689 84 SUPERFAMILY SSF81333 3 78 9.15E-18 T 11-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily APJL_1684 7f60a27867b6f13ea94a076643145689 84 Gene3D G3DSA:1.20.20.10 1 77 2.2E-26 T 11-10-2018 IPR038662 F1F0 ATP synthase subunit C superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 17 157 7.6E-63 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 Pfam PF02556 Preprotein translocase subunit SecB 14 153 1.3E-52 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 SUPERFAMILY SSF54611 9 151 2.07E-51 T 11-10-2018 IPR035958 SecB-like superfamily APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 Gene3D G3DSA:3.10.420.10 1 165 7.3E-60 T 11-10-2018 IPR035958 SecB-like superfamily APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 107 129 6.8E-40 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 133 151 6.8E-40 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 21 38 6.8E-40 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 83 103 6.8E-40 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APJL_1535 559cd9b52d262929e9e47dc0550208c9 166 Hamap MF_00821 Protein-export protein SecB [secB]. 1 155 32.473 T 11-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 APJL_0352 bb8bf0e7e8f5955562f830669d26a8ab 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0352 bb8bf0e7e8f5955562f830669d26a8ab 241 Pfam PF00005 ABC transporter 19 166 5.9E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0352 bb8bf0e7e8f5955562f830669d26a8ab 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 5.1E-123 T 11-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 APJL_0352 bb8bf0e7e8f5955562f830669d26a8ab 241 SUPERFAMILY SSF52540 3 236 1.49E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0352 bb8bf0e7e8f5955562f830669d26a8ab 241 Gene3D G3DSA:3.40.50.300 3 241 1.1E-71 T 11-10-2018 APJL_0352 bb8bf0e7e8f5955562f830669d26a8ab 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 1.1E-8 T 11-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal APJL_0352 bb8bf0e7e8f5955562f830669d26a8ab 241 SMART SM00382 28 213 8.2E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1740 37af67216f6530753697fa3238e8271f 449 Gene3D G3DSA:2.40.160.90 319 449 2.8E-33 T 11-10-2018 APJL_1740 37af67216f6530753697fa3238e8271f 449 SUPERFAMILY SSF56925 307 444 2.35E-25 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_0564 5a7b0dc9228c60e00cfb5102de5ca8c5 466 Gene3D G3DSA:3.40.640.10 96 457 5.9E-100 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0564 5a7b0dc9228c60e00cfb5102de5ca8c5 466 SUPERFAMILY SSF53383 80 459 2.59E-66 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0564 5a7b0dc9228c60e00cfb5102de5ca8c5 466 Pfam PF00155 Aminotransferase class I and II 113 430 1.9E-17 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APJL_0564 5a7b0dc9228c60e00cfb5102de5ca8c5 466 Gene3D G3DSA:1.10.10.10 8 89 1.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0564 5a7b0dc9228c60e00cfb5102de5ca8c5 466 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 83 9.5E-16 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_0564 5a7b0dc9228c60e00cfb5102de5ca8c5 466 SUPERFAMILY SSF46785 12 87 1.04E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0564 5a7b0dc9228c60e00cfb5102de5ca8c5 466 SMART SM00345 24 83 2.9E-13 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 TIGRFAM TIGR02794 tolA_full: protein TolA 11 231 2.6E-33 T 11-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 TIGRFAM TIGR02794 tolA_full: protein TolA 133 418 5.4E-53 T 11-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 SUPERFAMILY SSF74653 336 421 1.7E-18 T 11-10-2018 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 PRINTS PR00624 Histone H5 signature 173 187 4.7E-5 T 11-10-2018 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 PRINTS PR00624 Histone H5 signature 205 222 4.7E-5 T 11-10-2018 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 PRINTS PR00624 Histone H5 signature 227 246 4.7E-5 T 11-10-2018 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 PRINTS PR00624 Histone H5 signature 63 84 4.7E-5 T 11-10-2018 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 Gene3D G3DSA:3.30.1150.10 335 419 1.1E-15 T 11-10-2018 APJL_0315 a6d9506465df38e7e3678c80a7bd1391 423 Pfam PF06519 TolA C-terminal 333 418 2.4E-19 T 11-10-2018 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0016021|GO:0043213 APJL_1602 0660c3a820f44d62a82a7dd532eb5912 82 Pfam PF03956 Lysine exporter LysO 2 79 3.5E-26 T 11-10-2018 IPR005642 Lysine exporter LysO APJL_1602 0660c3a820f44d62a82a7dd532eb5912 82 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 1 78 2.0E-25 T 11-10-2018 IPR005642 Lysine exporter LysO APJL_1902 a444a8c74f654d329e2b41c7585616e1 394 SUPERFAMILY SSF56796 1 390 8.64E-106 T 11-10-2018 APJL_1902 a444a8c74f654d329e2b41c7585616e1 394 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 266 286 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APJL_1902 a444a8c74f654d329e2b41c7585616e1 394 Gene3D G3DSA:1.20.1090.10 186 392 1.5E-45 T 11-10-2018 APJL_1902 a444a8c74f654d329e2b41c7585616e1 394 Pfam PF00465 Iron-containing alcohol dehydrogenase 9 364 5.9E-100 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 APJL_1902 a444a8c74f654d329e2b41c7585616e1 394 Gene3D G3DSA:3.40.50.1970 1 185 7.3E-54 T 11-10-2018 APJL_0883 9e87ad9827cd95885de55240bf6ad4f4 234 Hamap MF_00510 Peptidase E [pepE]. 2 218 46.491 T 11-10-2018 IPR023172 Peptidase S51, dipeptidase E GO:0016805 APJL_0883 9e87ad9827cd95885de55240bf6ad4f4 234 Pfam PF03575 Peptidase family S51 4 208 1.0E-68 T 11-10-2018 IPR005320 Peptidase S51 GO:0006508|GO:0008236 APJL_0883 9e87ad9827cd95885de55240bf6ad4f4 234 Gene3D G3DSA:3.40.50.880 2 227 3.9E-61 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_0883 9e87ad9827cd95885de55240bf6ad4f4 234 SUPERFAMILY SSF52317 3 217 1.69E-46 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_0054 c9208a13adbd9d33683a02c2907cb4db 87 PRINTS PR00160 Glutaredoxin signature 3 21 7.5E-11 T 11-10-2018 IPR014025 Glutaredoxin subgroup APJL_0054 c9208a13adbd9d33683a02c2907cb4db 87 PRINTS PR00160 Glutaredoxin signature 52 65 7.5E-11 T 11-10-2018 IPR014025 Glutaredoxin subgroup APJL_0054 c9208a13adbd9d33683a02c2907cb4db 87 PRINTS PR00160 Glutaredoxin signature 66 79 7.5E-11 T 11-10-2018 IPR014025 Glutaredoxin subgroup APJL_0054 c9208a13adbd9d33683a02c2907cb4db 87 Pfam PF00462 Glutaredoxin 3 69 7.2E-13 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APJL_0054 c9208a13adbd9d33683a02c2907cb4db 87 Gene3D G3DSA:3.40.30.10 2 85 9.3E-21 T 11-10-2018 APJL_0054 c9208a13adbd9d33683a02c2907cb4db 87 SUPERFAMILY SSF52833 3 81 4.81E-18 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0054 c9208a13adbd9d33683a02c2907cb4db 87 ProSitePatterns PS00195 Glutaredoxin active site. 5 20 - T 11-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 APJL_0054 c9208a13adbd9d33683a02c2907cb4db 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 86 2.9E-45 T 11-10-2018 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 287 302 8.7E-14 T 11-10-2018 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 302 318 8.7E-14 T 11-10-2018 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 164 179 8.7E-14 T 11-10-2018 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 8.7E-14 T 11-10-2018 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 Pfam PF01494 FAD binding domain 5 353 2.7E-20 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 6 397 8.7E-132 T 11-10-2018 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 SUPERFAMILY SSF51905 4 388 1.2E-42 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 Gene3D G3DSA:3.30.9.50 88 276 8.0E-91 T 11-10-2018 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 Gene3D G3DSA:3.50.50.60 6 345 8.0E-91 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 301 314 - T 11-10-2018 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 APJL_0345 b2bc628a618046142be3aaaff52c4ee8 399 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 397 7.1E-118 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 APJL_1512 91994dc17959eef5679f417eaa6bea44 452 Gene3D G3DSA:2.60.40.420 334 452 6.0E-16 T 11-10-2018 IPR008972 Cupredoxin APJL_1512 91994dc17959eef5679f417eaa6bea44 452 Pfam PF07731 Multicopper oxidase 339 422 4.3E-6 T 11-10-2018 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 APJL_1512 91994dc17959eef5679f417eaa6bea44 452 Pfam PF07732 Multicopper oxidase 37 149 2.8E-23 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 APJL_1512 91994dc17959eef5679f417eaa6bea44 452 SUPERFAMILY SSF49503 154 276 2.11E-24 T 11-10-2018 IPR008972 Cupredoxin APJL_1512 91994dc17959eef5679f417eaa6bea44 452 Gene3D G3DSA:2.60.40.420 10 146 8.0E-30 T 11-10-2018 IPR008972 Cupredoxin APJL_1512 91994dc17959eef5679f417eaa6bea44 452 SUPERFAMILY SSF49503 7 150 2.34E-22 T 11-10-2018 IPR008972 Cupredoxin APJL_1512 91994dc17959eef5679f417eaa6bea44 452 Hamap MF_00915 Cell division protein FtsP [ftsP]. 1 451 55.826 T 11-10-2018 IPR026589 Cell division protein FtsP GO:0043093 APJL_1512 91994dc17959eef5679f417eaa6bea44 452 Gene3D G3DSA:2.60.40.420 147 321 6.8E-40 T 11-10-2018 IPR008972 Cupredoxin APJL_1512 91994dc17959eef5679f417eaa6bea44 452 SUPERFAMILY SSF49503 337 450 4.0E-13 T 11-10-2018 IPR008972 Cupredoxin APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 Gene3D G3DSA:3.30.9.10 96 328 9.1E-74 T 11-10-2018 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 Pfam PF01266 FAD dependent oxidoreductase 20 369 2.7E-52 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 SUPERFAMILY SSF54373 236 327 8.89E-13 T 11-10-2018 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 TIGRFAM TIGR03377 glycerol3P_GlpA: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit 20 549 6.7E-258 T 11-10-2018 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit GO:0004368|GO:0005886|GO:0010181|GO:0046174|GO:0050660|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 48 60 7.4E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 321 327 7.4E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 357 369 7.4E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 19 31 7.4E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 32 42 7.4E-22 T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 Gene3D G3DSA:3.50.50.60 20 376 9.1E-74 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 Gene3D G3DSA:1.10.10.1100 431 504 4.7E-17 T 11-10-2018 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 Pfam PF04324 BFD-like [2Fe-2S] binding domain 443 492 4.3E-9 T 11-10-2018 IPR007419 BFD-like [2Fe-2S]-binding domain APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 362 372 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 SUPERFAMILY SSF51905 19 387 3.64E-39 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0398 547b2308a5845661b6fa331d12e7dcaf 561 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 24 41 - T 11-10-2018 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952|Reactome: R-HSA-1483166|Reactome: R-HSA-163560 APJL_2005 a900e575de92233135bc0afd8b928b53 622 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 218 335 4.5E-39 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 APJL_2005 a900e575de92233135bc0afd8b928b53 622 Gene3D G3DSA:2.30.42.20 461 618 9.8E-21 T 11-10-2018 APJL_2005 a900e575de92233135bc0afd8b928b53 622 SUPERFAMILY SSF54211 193 336 3.03E-38 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_2005 a900e575de92233135bc0afd8b928b53 622 SUPERFAMILY SSF118116 456 604 9.55E-23 T 11-10-2018 IPR037198 MutL, C-terminal domain superfamily APJL_2005 a900e575de92233135bc0afd8b928b53 622 Gene3D G3DSA:3.30.1370.100 499 581 9.8E-21 T 11-10-2018 APJL_2005 a900e575de92233135bc0afd8b928b53 622 Gene3D G3DSA:3.30.230.10 222 335 4.2E-38 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_2005 a900e575de92233135bc0afd8b928b53 622 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 4 622 24.642 T 11-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 APJL_2005 a900e575de92233135bc0afd8b928b53 622 SMART SM00853 460 595 5.0E-9 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 APJL_2005 a900e575de92233135bc0afd8b928b53 622 SMART SM01340 217 336 9.9E-58 T 11-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 APJL_2005 a900e575de92233135bc0afd8b928b53 622 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 27 123 6.2E-12 T 11-10-2018 APJL_2005 a900e575de92233135bc0afd8b928b53 622 SUPERFAMILY SSF55874 6 204 7.07E-55 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_2005 a900e575de92233135bc0afd8b928b53 622 Gene3D G3DSA:3.30.565.10 5 221 2.1E-72 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_2005 a900e575de92233135bc0afd8b928b53 622 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 6 316 1.7E-105 T 11-10-2018 IPR002099 DNA mismatch repair protein family, N-terminal GO:0005524|GO:0006298|GO:0030983 APJL_2005 a900e575de92233135bc0afd8b928b53 622 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 96 102 - T 11-10-2018 IPR014762 DNA mismatch repair, conserved site APJL_2005 a900e575de92233135bc0afd8b928b53 622 Pfam PF08676 MutL C terminal dimerisation domain 461 567 9.1E-17 T 11-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 Pfam PF06426 Serine acetyltransferase, N-terminal 9 113 2.7E-39 T 11-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 SUPERFAMILY SSF51161 8 260 3.6E-66 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 Gene3D G3DSA:1.10.3130.10 1 142 1.4E-53 T 11-10-2018 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 PIRSF PIRSF000441 75 266 4.1E-59 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 PIRSF PIRSF000441 7 62 120.0 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 82 242 2.9E-74 T 11-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 Gene3D G3DSA:2.160.10.10 143 270 5.2E-38 T 11-10-2018 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 SMART SM00971 9 113 1.3E-63 T 11-10-2018 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 APJL_1537 6729b511e32015e1db5c6b0fbae193b9 271 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 227 5.0E-10 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 Gene3D G3DSA:3.40.50.880 8 204 3.9E-56 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 SUPERFAMILY SSF52317 6 235 9.99E-59 T 11-10-2018 IPR029062 Class I glutamine amidotransferase-like APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 210 523 7.2E-154 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 Pfam PF00117 Glutamine amidotransferase class-I 11 197 1.6E-41 T 11-10-2018 IPR017926 Glutamine amidotransferase APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 SUPERFAMILY SSF54810 403 523 1.02E-50 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 Pfam PF00958 GMP synthase C terminal domain 431 522 1.1E-42 T 11-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 SUPERFAMILY SSF52402 192 444 8.6E-57 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 Pfam PF02540 NAD synthase 216 285 1.6E-6 T 11-10-2018 IPR022310 NAD/GMP synthase APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 9 203 3.0E-83 T 11-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 Gene3D G3DSA:3.40.50.620 207 403 1.5E-75 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00097 Anthranilate synthase component II signature 53 62 1.6E-6 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00097 Anthranilate synthase component II signature 175 188 1.6E-6 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00097 Anthranilate synthase component II signature 80 91 1.6E-6 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 6 523 55.828 T 11-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 Gene3D G3DSA:3.30.300.10 404 523 2.3E-50 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00096 Glutamine amidotransferase superfamily signature 80 91 1.1E-7 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00096 Glutamine amidotransferase superfamily signature 53 62 1.1E-7 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00096 Glutamine amidotransferase superfamily signature 175 188 1.1E-7 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 50 64 5.3E-6 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 9 23 5.3E-6 T 11-10-2018 APJL_0585 7e59d78d26dd5f38bb097eae6b9a506e 523 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 80 96 5.3E-6 T 11-10-2018 APJL_0164 0cc217bebf6112768162a8b02b97bcac 593 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 46 589 4.2E-115 T 11-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 APJL_0164 0cc217bebf6112768162a8b02b97bcac 593 Gene3D G3DSA:3.20.70.20 55 572 1.6E-32 T 11-10-2018 APJL_0164 0cc217bebf6112768162a8b02b97bcac 593 SUPERFAMILY SSF51998 52 573 3.97E-102 T 11-10-2018 APJL_0164 0cc217bebf6112768162a8b02b97bcac 593 TIGRFAM TIGR02827 RNR_anaer_Bdell: anaerobic ribonucleoside-triphosphate reductase 3 588 0.0 T 11-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 423 7.1E-163 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 SUPERFAMILY SSF55205 1 428 2.22E-141 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 Gene3D G3DSA:3.65.10.10 20 227 7.1E-155 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 429 9.1E-145 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 431 35.97 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 PIRSF PIRSF000505 1 432 1.3E-154 T 11-10-2018 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866|GO:0009073 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 ProSitePatterns PS00885 EPSP synthase signature 2. 341 359 - T 11-10-2018 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 APJL_0697 5c3c9a3b59583c7df2ecfc4b41b91072 432 Gene3D G3DSA:3.65.10.10 245 422 7.1E-155 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Gene3D G3DSA:3.40.630.30 294 481 3.5E-63 T 11-10-2018 APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Pfam PF13718 GNAT acetyltransferase 2 316 425 3.5E-14 T 11-10-2018 IPR000182 GNAT domain APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Pfam PF13718 GNAT acetyltransferase 2 427 483 3.8E-12 T 11-10-2018 IPR000182 GNAT domain APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Hamap MF_01886 tRNA(Met) cytidine acetyltransferase TmcA [tmcA]. 1 595 42.062 T 11-10-2018 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA GO:0000049|GO:0002101|GO:0051391|GO:0051392 APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Gene3D G3DSA:3.40.50.12320 150 293 6.5E-42 T 11-10-2018 APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Pfam PF17176 tRNA-binding domain 487 594 1.9E-25 T 11-10-2018 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Gene3D G3DSA:1.20.120.890 482 596 1.2E-14 T 11-10-2018 IPR038321 TmcA, C-terminal domain superfamily APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 SUPERFAMILY SSF55729 311 480 1.32E-10 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Gene3D G3DSA:3.40.50.11040 4 148 9.3E-34 T 11-10-2018 APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 Pfam PF05127 Helicase 155 302 2.3E-37 T 11-10-2018 IPR007807 Helicase domain Reactome: R-HSA-6790901 APJL_0693 0e98d69a1d285314a76c7e25e7d37ee3 596 SUPERFAMILY SSF52540 81 252 3.9E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0389 eb7116437638b52bb6f0b926f06b5d34 503 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 62 451 2.1E-97 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 APJL_0389 eb7116437638b52bb6f0b926f06b5d34 503 Pfam PF00795 Carbon-nitrogen hydrolase 221 470 1.6E-33 T 11-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 APJL_0389 eb7116437638b52bb6f0b926f06b5d34 503 Gene3D G3DSA:3.60.110.10 214 479 4.0E-16 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APJL_0389 eb7116437638b52bb6f0b926f06b5d34 503 SUPERFAMILY SSF56317 216 480 3.66E-41 T 11-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily APJL_0389 eb7116437638b52bb6f0b926f06b5d34 503 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 9 489 23.044 T 11-10-2018 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 APJL_1038 599de261839b1d1afb281bd6d37f69a7 196 Gene3D G3DSA:3.20.20.140 3 196 2.3E-95 T 11-10-2018 APJL_1038 599de261839b1d1afb281bd6d37f69a7 196 Pfam PF02614 Glucuronate isomerase 6 195 1.4E-94 T 11-10-2018 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248 APJL_1038 599de261839b1d1afb281bd6d37f69a7 196 SUPERFAMILY SSF51556 5 196 1.7E-73 T 11-10-2018 IPR032466 Metal-dependent hydrolase APJL_0817 7797795f98b198752858557f4596dfa7 587 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 12 405 4.9E-157 T 11-10-2018 IPR003776 YcaO-like domain APJL_0817 7797795f98b198752858557f4596dfa7 587 Gene3D G3DSA:1.10.490.140 154 273 6.8E-6 T 11-10-2018 APJL_0817 7797795f98b198752858557f4596dfa7 587 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 60 392 1.9E-74 T 11-10-2018 IPR003776 YcaO-like domain APJL_1784 a725da85417380424ebe132cf8dff6b6 254 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 7 253 32.429 T 11-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 APJL_1784 a725da85417380424ebe132cf8dff6b6 254 Gene3D G3DSA:3.40.50.1820 1 254 7.9E-58 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1784 a725da85417380424ebe132cf8dff6b6 254 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 12 252 5.3E-83 T 11-10-2018 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 APJL_1784 a725da85417380424ebe132cf8dff6b6 254 Pfam PF00561 alpha/beta hydrolase fold 13 241 4.1E-16 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APJL_1784 a725da85417380424ebe132cf8dff6b6 254 SUPERFAMILY SSF53474 3 253 1.8E-38 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 ProSitePatterns PS00836 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1. 4 30 - T 11-10-2018 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 GO:0016491|GO:0055114 Reactome: R-HSA-71403 APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 SMART SM01003 4 137 1.7E-70 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 Gene3D G3DSA:3.40.50.720 137 318 2.1E-157 T 11-10-2018 APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 PIRSF PIRSF000203 1 511 5.4E-276 T 11-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 426 511 2.3E-35 T 11-10-2018 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 368 1.7E-74 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 SUPERFAMILY SSF51735 138 313 8.86E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 TIGRFAM TIGR00561 pntA: NAD(P)(+) transhydrogenase (AB-specific), alpha subunit 3 512 3.8E-293 T 11-10-2018 IPR026255 NAD(P) transhydrogenase, alpha subunit GO:0008746|GO:0055114|GO:1902600 KEGG: 00760+1.6.1.2|Reactome: R-HSA-71403 APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 ProSitePatterns PS00837 Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2. 170 195 - T 11-10-2018 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 GO:0016491|GO:0055114 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1|Reactome: R-HSA-71403 APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 1.5E-48 T 11-10-2018 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 SUPERFAMILY SSF52283 1 168 6.04E-54 T 11-10-2018 APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 SMART SM01002 146 311 1.8E-81 T 11-10-2018 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain APJL_0850 80b7e86d32a6d2c4ddd6e27839b8ea17 512 Gene3D G3DSA:3.40.50.720 3 365 2.1E-157 T 11-10-2018 APJL_1371 f7d58087b8d94b5cf59b855dcdb34196 239 Gene3D G3DSA:3.40.190.10 25 236 1.4E-67 T 11-10-2018 APJL_1371 f7d58087b8d94b5cf59b855dcdb34196 239 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 44 57 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APJL_1371 f7d58087b8d94b5cf59b855dcdb34196 239 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 22 238 2.5E-60 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APJL_1371 f7d58087b8d94b5cf59b855dcdb34196 239 SMART SM00062 21 239 2.5E-67 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APJL_1371 f7d58087b8d94b5cf59b855dcdb34196 239 SUPERFAMILY SSF53850 1 238 3.92E-61 T 11-10-2018 APJL_1371 f7d58087b8d94b5cf59b855dcdb34196 239 Gene3D G3DSA:3.40.190.10 108 197 1.4E-67 T 11-10-2018 APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 26 45 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 SUPERFAMILY SSF53448 19 378 1.28E-74 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 SUPERFAMILY SSF51161 327 420 4.85E-18 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 17 423 50.98 T 11-10-2018 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 Gene3D G3DSA:2.160.10.10 302 430 1.2E-36 T 11-10-2018 APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 113 121 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 Gene3D G3DSA:3.90.550.10 12 301 7.9E-86 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 212 222 - T 11-10-2018 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 Pfam PF00483 Nucleotidyl transferase 23 291 1.8E-65 T 11-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 APJL_0364 752b1e9761e408afb68b45ed2cd55716 438 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 21 397 3.9E-157 T 11-10-2018 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|MetaCyc: PWY-7902 APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 Pfam PF00263 Bacterial type II and III secretion system protein 256 415 3.8E-44 T 11-10-2018 IPR004846 Type II/III secretion system GO:0009306 APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 PRINTS PR01032 Gene IV protein signature 236 259 4.2E-7 T 11-10-2018 APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 PRINTS PR01032 Gene IV protein signature 395 417 4.2E-7 T 11-10-2018 APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 PRINTS PR01032 Gene IV protein signature 22 43 4.2E-7 T 11-10-2018 APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 PRINTS PR01032 Gene IV protein signature 342 370 4.2E-7 T 11-10-2018 APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 360 393 - T 11-10-2018 IPR004845 Type II secretion system GspD, conserved site GO:0008565 APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 19 415 1.4E-110 T 11-10-2018 IPR013355 Type IV pilus secretin PilQ APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 Pfam PF03958 Bacterial type II/III secretion system short domain 112 177 1.1E-11 T 11-10-2018 IPR005644 NolW-like APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 Gene3D G3DSA:3.30.1370.120 109 174 7.8E-13 T 11-10-2018 IPR038591 NolW-like superfamily APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 PRINTS PR00811 Bacterial general secretion pathway protein D signature 252 276 5.5E-17 T 11-10-2018 IPR001775 GspD/PilQ family APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 PRINTS PR00811 Bacterial general secretion pathway protein D signature 379 397 5.5E-17 T 11-10-2018 IPR001775 GspD/PilQ family APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 PRINTS PR00811 Bacterial general secretion pathway protein D signature 402 416 5.5E-17 T 11-10-2018 IPR001775 GspD/PilQ family APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 PRINTS PR00811 Bacterial general secretion pathway protein D signature 177 187 5.5E-17 T 11-10-2018 IPR001775 GspD/PilQ family APJL_0201 ca4aee160221489ab24ca083bbec3e9d 432 Gene3D G3DSA:3.55.50.30 12 104 1.6E-13 T 11-10-2018 APJL_1483 867a71e65fee006b147a825e4c7bee66 302 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 15 298 7.2E-118 T 11-10-2018 APJL_1483 867a71e65fee006b147a825e4c7bee66 302 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 6 299 21.186 T 11-10-2018 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 APJL_1483 867a71e65fee006b147a825e4c7bee66 302 PIRSF PIRSF005355 1 302 1.7E-84 T 11-10-2018 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 APJL_1483 867a71e65fee006b147a825e4c7bee66 302 Pfam PF01040 UbiA prenyltransferase family 23 273 3.0E-37 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 SUPERFAMILY SSF50621 257 414 1.82E-50 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 SUPERFAMILY SSF51419 26 283 2.04E-82 T 11-10-2018 IPR029066 PLP-binding barrel APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 11-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 282 370 1.6E-25 T 11-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 Gene3D G3DSA:3.20.20.10 34 276 1.8E-148 T 11-10-2018 IPR029066 PLP-binding barrel APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 Gene3D G3DSA:2.40.37.10 14 409 1.8E-148 T 11-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 228 241 - T 11-10-2018 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 35 281 1.7E-79 T 11-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 3.7E-26 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 3.7E-26 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 3.7E-26 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 271 290 3.7E-26 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 370 383 3.7E-26 T 11-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 413 41.225 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 3.0E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 299 317 3.0E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 380 402 3.0E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 3.0E-29 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_1551 4d09c87f01aa9bce9689e4599fc2c730 416 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 7 412 3.0E-165 T 11-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_1411 8db192a1b79fecb77d2d00556e59301d 266 TIGRFAM TIGR00822 EII-Sor: PTS system, mannose/fructose/sorbose family, IIC component 1 266 1.7E-113 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 APJL_1411 8db192a1b79fecb77d2d00556e59301d 266 Pfam PF03609 PTS system sorbose-specific iic component 6 237 2.5E-73 T 11-10-2018 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit GO:0009401|GO:0016021 APJL_0335 add76897cbfbafbd02cc967040123a9b 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 8 392 9.2E-120 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APJL_0335 add76897cbfbafbd02cc967040123a9b 396 PIRSF PIRSF001434 1 396 2.8E-117 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APJL_0335 add76897cbfbafbd02cc967040123a9b 396 Gene3D G3DSA:3.90.1150.10 260 396 1.5E-45 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0335 add76897cbfbafbd02cc967040123a9b 396 Gene3D G3DSA:3.40.640.10 4 259 1.4E-72 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0335 add76897cbfbafbd02cc967040123a9b 396 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 9 394 4.1E-183 T 11-10-2018 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 APJL_0335 add76897cbfbafbd02cc967040123a9b 396 SUPERFAMILY SSF53383 24 393 6.43E-94 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0335 add76897cbfbafbd02cc967040123a9b 396 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APJL_0012 b8eafaa28d31cffa0f7100739d6e5923 104 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 21 101 1.4E-16 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 APJL_0012 b8eafaa28d31cffa0f7100739d6e5923 104 Hamap MF_00910 Cell division protein FtsL [ftsL]. 20 102 13.952 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 APJL_0012 b8eafaa28d31cffa0f7100739d6e5923 104 Pfam PF04999 Cell division protein FtsL 9 103 3.2E-29 T 11-10-2018 IPR011922 Cell division protein FtsL GO:0016021|GO:0051301 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 Gene3D G3DSA:3.40.50.620 9 614 8.7E-240 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 SUPERFAMILY SSF52374 1 632 1.1E-133 T 11-10-2018 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 SUPERFAMILY SSF50677 188 387 4.6E-56 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 223 246 3.8E-34 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 511 524 3.8E-34 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 35 46 3.8E-34 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 385 400 3.8E-34 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 546 555 3.8E-34 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 Pfam PF06827 Zinc finger found in FPG and IleRS 882 910 2.0E-7 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 1 913 20.826 T 11-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 Pfam PF08264 Anticodon-binding domain of tRNA 670 828 8.4E-28 T 11-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 12 625 5.6E-218 T 11-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 Gene3D G3DSA:3.90.740.10 179 392 8.7E-240 T 11-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 SUPERFAMILY SSF47323 637 913 2.62E-80 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 Gene3D G3DSA:1.10.730.20 625 914 5.2E-93 T 11-10-2018 APJL_0045 d989b7e1de2d29fb4d931f1a035863e6 922 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 1 830 2.3E-293 T 11-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 APJL_1192 ea89882e3f2b757bbcd57bf649d767ac 124 SUPERFAMILY SSF54995 1 103 4.32E-37 T 11-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1192 ea89882e3f2b757bbcd57bf649d767ac 124 Gene3D G3DSA:3.30.70.60 1 92 9.6E-33 T 11-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 APJL_1192 ea89882e3f2b757bbcd57bf649d767ac 124 Pfam PF01250 Ribosomal protein S6 3 90 1.1E-28 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1192 ea89882e3f2b757bbcd57bf649d767ac 124 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.897 T 11-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 APJL_1192 ea89882e3f2b757bbcd57bf649d767ac 124 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 7.6E-38 T 11-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1192 ea89882e3f2b757bbcd57bf649d767ac 124 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 11-10-2018 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 APJL_0240 a7a37fd9fad2e998fde7ae7f1a37e402 103 Gene3D G3DSA:3.30.300.90 1 89 7.3E-34 T 11-10-2018 APJL_0240 a7a37fd9fad2e998fde7ae7f1a37e402 103 Pfam PF01722 BolA-like protein 11 84 6.9E-30 T 11-10-2018 IPR002634 BolA protein APJL_0240 a7a37fd9fad2e998fde7ae7f1a37e402 103 SUPERFAMILY SSF82657 1 89 1.07E-30 T 11-10-2018 IPR036065 BolA-like superfamily APJL_0240 a7a37fd9fad2e998fde7ae7f1a37e402 103 PIRSF PIRSF003113 1 100 5.1E-37 T 11-10-2018 IPR002634 BolA protein APJL_0093 e5940c31158f46723f6cd03b90b1d7e8 146 PIRSF PIRSF018193 1 142 3.0E-62 T 11-10-2018 IPR016716 Regulator of ribonuclease activity B APJL_0093 e5940c31158f46723f6cd03b90b1d7e8 146 SUPERFAMILY SSF89946 3 121 1.83E-36 T 11-10-2018 IPR036701 RraB-like superfamily APJL_0093 e5940c31158f46723f6cd03b90b1d7e8 146 Gene3D G3DSA:3.30.70.970 1 122 2.7E-42 T 11-10-2018 IPR036701 RraB-like superfamily APJL_0093 e5940c31158f46723f6cd03b90b1d7e8 146 Pfam PF06877 Regulator of ribonuclease activity B 9 110 1.8E-28 T 11-10-2018 IPR009671 Regulator of ribonuclease activity B domain APJL_0093 e5940c31158f46723f6cd03b90b1d7e8 146 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 1 114 29.519 T 11-10-2018 IPR016716 Regulator of ribonuclease activity B APJL_1022 ce60ceb0499954f367f17d9ae8fc4b18 437 Pfam PF00999 Sodium/hydrogen exchanger family 32 416 1.7E-50 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 SMART SM00420 6 58 1.9E-25 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 Gene3D G3DSA:1.10.10.10 1 57 9.4E-8 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 Gene3D G3DSA:3.30.750.70 70 146 4.0E-8 T 11-10-2018 APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 8.2E-13 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 8.2E-13 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 Pfam PF08220 DeoR-like helix-turn-helix domain 6 60 4.7E-24 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 SUPERFAMILY SSF46785 6 75 4.67E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 Pfam PF00455 DeoR C terminal sensor domain 75 230 7.1E-48 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 SUPERFAMILY SSF100950 74 232 5.58E-28 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 SMART SM01134 72 232 3.8E-65 T 11-10-2018 APJL_0830 934ed87f09ec4d81e440e7b360d4e526 253 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 102 3.9E-40 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 3.9E-134 T 11-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 PIRSF PIRSF000149 1 333 4.7E-132 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 11-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 SUPERFAMILY SSF55347 149 312 1.07E-77 T 11-10-2018 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 Gene3D G3DSA:3.30.360.10 149 314 3.0E-151 T 11-10-2018 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 Gene3D G3DSA:3.40.50.720 4 326 3.0E-151 T 11-10-2018 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 5.9E-69 T 11-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 SUPERFAMILY SSF51735 3 166 1.9E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 SMART SM00846 3 150 1.6E-93 T 11-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 5.7E-47 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 5.7E-47 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 5.7E-47 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 5.7E-47 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0460 a4cba691a9fab7f4c563604ba1aad49c 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 5.7E-47 T 11-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 232 410 1.7E-36 T 11-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 Gene3D G3DSA:3.30.930.10 106 435 3.2E-115 T 11-10-2018 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 SUPERFAMILY SSF46589 1 113 6.28E-28 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 108 4.8E-30 T 11-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 427 8.3E-177 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 SUPERFAMILY SSF55681 117 430 7.46E-99 T 11-10-2018 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 PIRSF PIRSF001529 1 435 1.0E-180 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 432 41.207 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 Gene3D G3DSA:1.10.287.40 1 105 9.2E-19 T 11-10-2018 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 286 299 7.0E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 361 377 7.0E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 343 359 7.0E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 326 339 7.0E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APJL_0880 46344627ea8c2fdb0ce3c3c3dde5276f 435 PRINTS PR00981 Seryl-tRNA synthetase signature 274 286 7.0E-34 T 11-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 APJL_0442 a3290fa9726d36efea4fbba13720cee0 105 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 11 98 5.0E-39 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 APJL_0442 a3290fa9726d36efea4fbba13720cee0 105 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 5 98 1.0E-36 T 11-10-2018 IPR017924 RNA-binding protein YhbY GO:0003723 APJL_0442 a3290fa9726d36efea4fbba13720cee0 105 Gene3D G3DSA:3.30.110.60 3 104 1.3E-36 T 11-10-2018 IPR035920 YhbY-like superfamily APJL_0442 a3290fa9726d36efea4fbba13720cee0 105 SUPERFAMILY SSF75471 4 97 1.44E-31 T 11-10-2018 IPR035920 YhbY-like superfamily APJL_0442 a3290fa9726d36efea4fbba13720cee0 105 SMART SM01103 5 88 4.7E-44 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 APJL_0442 a3290fa9726d36efea4fbba13720cee0 105 Pfam PF01985 CRS1 / YhbY (CRM) domain 5 88 1.9E-22 T 11-10-2018 IPR001890 RNA-binding, CRM domain GO:0003723 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 Gene3D G3DSA:1.10.3210.10 309 502 5.0E-59 T 11-10-2018 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 12 304 7.1E-96 T 11-10-2018 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 Pfam PF02541 Ppx/GppA phosphatase family 25 307 5.7E-92 T 11-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 SUPERFAMILY SSF109604 312 495 2.51E-49 T 11-10-2018 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 PIRSF PIRSF001267 2 502 1.6E-196 T 11-10-2018 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 SUPERFAMILY SSF53067 12 132 1.58E-35 T 11-10-2018 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 Gene3D G3DSA:3.30.420.40 13 302 5.7E-92 T 11-10-2018 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 Gene3D G3DSA:3.30.420.150 116 294 5.7E-92 T 11-10-2018 APJL_0707 a583e0ed373066f2880b3eb1df389701 502 SUPERFAMILY SSF53067 137 306 9.33E-44 T 11-10-2018 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 Gene3D G3DSA:3.30.420.40 1 241 5.0E-90 T 11-10-2018 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 TIGRFAM TIGR01312 XylB: xylulokinase 3 476 4.8E-178 T 11-10-2018 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 SUPERFAMILY SSF53067 242 480 1.79E-57 T 11-10-2018 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 PIRSF PIRSF000538 1 481 1.1E-131 T 11-10-2018 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 1 240 2.6E-78 T 11-10-2018 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 126 138 - T 11-10-2018 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 249 434 3.9E-29 T 11-10-2018 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 Gene3D G3DSA:3.30.420.40 242 481 6.2E-79 T 11-10-2018 APJL_1954 b339852b3ff4e0d97aa85bc6212aa471 481 SUPERFAMILY SSF53067 2 242 2.27E-73 T 11-10-2018 APJL_1709 d127fed87ecac514be5575cdf9f14626 172 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 19 166 3.7E-42 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 APJL_1709 d127fed87ecac514be5575cdf9f14626 172 SUPERFAMILY SSF54862 50 169 3.27E-20 T 11-10-2018 APJL_1709 d127fed87ecac514be5575cdf9f14626 172 Gene3D G3DSA:3.30.70.20 50 106 7.2E-13 T 11-10-2018 APJL_1709 d127fed87ecac514be5575cdf9f14626 172 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 87 98 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1709 d127fed87ecac514be5575cdf9f14626 172 Pfam PF00037 4Fe-4S binding domain 145 165 4.1E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1709 d127fed87ecac514be5575cdf9f14626 172 Pfam PF13187 4Fe-4S dicluster domain 55 101 1.5E-10 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1709 d127fed87ecac514be5575cdf9f14626 172 Gene3D G3DSA:3.30.70.20 115 172 1.3E-7 T 11-10-2018 APJL_1605 6e124a89aae79657eb6fbf5fb7a97eb0 112 Gene3D G3DSA:1.10.1530.10 5 64 9.1E-31 T 11-10-2018 APJL_1605 6e124a89aae79657eb6fbf5fb7a97eb0 112 Pfam PF02615 Malate/L-lactate dehydrogenase 3 92 8.5E-20 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 APJL_1605 6e124a89aae79657eb6fbf5fb7a97eb0 112 SUPERFAMILY SSF89733 1 91 5.36E-19 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 APJL_1605 6e124a89aae79657eb6fbf5fb7a97eb0 112 Gene3D G3DSA:3.30.1370.60 65 93 9.1E-31 T 11-10-2018 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 Gene3D G3DSA:3.40.1160.10 1 262 2.0E-86 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 PIRSF PIRSF000729 1 363 1.1E-133 T 11-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 ProSitePatterns PS00902 Glutamate 5-kinase signature. 204 221 - T 11-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 TIGRFAM TIGR01027 proB: glutamate 5-kinase 3 362 8.2E-145 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 Gene3D G3DSA:2.30.130.10 263 363 1.3E-26 T 11-10-2018 IPR036974 PUA domain superfamily GO:0003723 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 PRINTS PR00474 Glutamate 5-kinase family signature 145 172 8.9E-54 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 PRINTS PR00474 Glutamate 5-kinase family signature 73 101 8.9E-54 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 PRINTS PR00474 Glutamate 5-kinase family signature 113 134 8.9E-54 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 PRINTS PR00474 Glutamate 5-kinase family signature 39 53 8.9E-54 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 PRINTS PR00474 Glutamate 5-kinase family signature 206 226 8.9E-54 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 SMART SM00359 273 355 8.4E-20 T 11-10-2018 IPR002478 PUA domain GO:0003723 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 SUPERFAMILY SSF53633 3 252 8.77E-68 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 Pfam PF00696 Amino acid kinase family 3 232 2.8E-43 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 Pfam PF01472 PUA domain 273 345 4.3E-21 T 11-10-2018 IPR002478 PUA domain GO:0003723 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 Hamap MF_00456 Glutamate 5-kinase [proB]. 3 258 36.509 T 11-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 APJL_0896 02dff686803d2b0c5a67bffaa3afb788 363 SUPERFAMILY SSF88697 273 362 2.32E-22 T 11-10-2018 IPR015947 PUA-like superfamily APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 SUPERFAMILY SSF55174 298 395 6.18E-16 T 11-10-2018 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 Gene3D G3DSA:3.10.290.10 328 395 5.4E-17 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 Pfam PF00579 tRNA synthetases class I (W and Y) 31 318 2.8E-83 T 11-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 3 395 47.736 T 11-10-2018 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 47 69 9.5E-27 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 212 224 9.5E-27 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 162 177 9.5E-27 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 179 201 9.5E-27 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 SMART SM00363 335 396 3.5E-4 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 5 396 4.1E-134 T 11-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 SUPERFAMILY SSF52374 8 316 1.09E-98 T 11-10-2018 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 43 53 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 Gene3D G3DSA:3.40.50.620 6 218 1.7E-76 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 Pfam PF01479 S4 domain 337 378 6.4E-6 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1501 1e998c6b1beb974f82c7c7ba69e94517 396 Gene3D G3DSA:1.10.240.10 219 327 1.2E-33 T 11-10-2018 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 SUPERFAMILY SSF55103 269 562 2.42E-113 T 11-10-2018 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 PIRSF PIRSF000101 1 563 0.0 T 11-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 Pfam PF09330 D-lactate dehydrogenase, membrane binding 272 562 1.0E-145 T 11-10-2018 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 Gene3D G3DSA:3.30.70.610 353 429 2.6E-14 T 11-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 Gene3D G3DSA:3.30.70.610 263 340 3.1E-17 T 11-10-2018 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 Gene3D G3DSA:3.30.465.10 100 262 1.8E-73 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 Gene3D G3DSA:3.30.43.10 3 97 1.7E-14 T 11-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 Hamap MF_02092 Quinone-dependent D-lactate dehydrogenase [dld]. 4 563 59.362 T 11-10-2018 IPR012256 D-lactate dehydrogenase GO:0005887|GO:0016901|GO:0019516|GO:0022904|GO:0050660 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 Gene3D G3DSA:3.30.1370.20 430 514 2.6E-40 T 11-10-2018 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 GO:0006089|GO:0050660|GO:0055085 KEGG: 00620+1.1.5.12|MetaCyc: PWY-5386|MetaCyc: PWY-7425 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 Pfam PF01565 FAD binding domain 41 160 1.3E-9 T 11-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 APJL_0685 876cf48b9e89cf4cdc8b367e42d4013f 563 SUPERFAMILY SSF56176 6 266 1.03E-74 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APJL_0233 7a6b33a125aa4f5bfa002c8cff5dbe96 431 Gene3D G3DSA:3.10.580.10 195 347 9.7E-32 T 11-10-2018 APJL_0233 7a6b33a125aa4f5bfa002c8cff5dbe96 431 SUPERFAMILY SSF56176 345 428 8.72E-21 T 11-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 APJL_0233 7a6b33a125aa4f5bfa002c8cff5dbe96 431 Pfam PF03471 Transporter associated domain 348 425 9.9E-19 T 11-10-2018 IPR005170 Transporter-associated domain APJL_0233 7a6b33a125aa4f5bfa002c8cff5dbe96 431 Gene3D G3DSA:3.30.465.10 348 429 4.2E-30 T 11-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 APJL_0233 7a6b33a125aa4f5bfa002c8cff5dbe96 431 Pfam PF01595 Domain of unknown function DUF21 8 199 1.2E-39 T 11-10-2018 IPR002550 CNNM, transmembrane domain APJL_0233 7a6b33a125aa4f5bfa002c8cff5dbe96 431 SMART SM01091 347 427 1.8E-23 T 11-10-2018 IPR005170 Transporter-associated domain APJL_0233 7a6b33a125aa4f5bfa002c8cff5dbe96 431 SUPERFAMILY SSF54631 202 337 3.54E-21 T 11-10-2018 APJL_0233 7a6b33a125aa4f5bfa002c8cff5dbe96 431 Pfam PF00571 CBS domain 287 334 9.6E-4 T 11-10-2018 IPR000644 CBS domain APJL_1459 7e0757004624a891391178485ba845fb 297 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 267 278 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1459 7e0757004624a891391178485ba845fb 297 Gene3D G3DSA:3.30.70.20 222 291 5.5E-8 T 11-10-2018 APJL_1459 7e0757004624a891391178485ba845fb 297 TIGRFAM TIGR02163 napH_: ferredoxin-type protein, NapH/MauN family 30 284 1.2E-114 T 11-10-2018 IPR011886 Ferredoxin-type protein, NapH/MauN family APJL_1459 7e0757004624a891391178485ba845fb 297 SUPERFAMILY SSF54862 102 291 6.8E-22 T 11-10-2018 APJL_1459 7e0757004624a891391178485ba845fb 297 Pfam PF00037 4Fe-4S binding domain 266 281 2.5E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1459 7e0757004624a891391178485ba845fb 297 Pfam PF12801 4Fe-4S binding domain 184 218 6.9E-4 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1459 7e0757004624a891391178485ba845fb 297 Pfam PF12801 4Fe-4S binding domain 89 134 7.4E-13 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 Pfam PF08220 DeoR-like helix-turn-helix domain 4 59 1.5E-19 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 SMART SM01134 71 230 2.5E-48 T 11-10-2018 APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 SUPERFAMILY SSF100950 72 229 1.99E-21 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 ProSitePatterns PS00894 DeoR-type HTH domain signature. 4 38 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 SMART SM00420 4 56 1.9E-20 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 Pfam PF00455 DeoR C terminal sensor domain 73 227 2.7E-39 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 SUPERFAMILY SSF46785 2 57 9.0E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 36 54 1.8E-11 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 22 36 1.8E-11 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1715 e887d8bb2b3bb4335274922c9a2737fe 248 Gene3D G3DSA:1.10.10.10 7 56 1.3E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0927 22cbdceafac389d5bb7c79d137724222 412 PIRSF PIRSF000813 26 408 7.8E-186 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 APJL_0927 22cbdceafac389d5bb7c79d137724222 412 Hamap MF_01261 Multifunctional CCA protein [cca]. 26 411 48.618 T 11-10-2018 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 APJL_0927 22cbdceafac389d5bb7c79d137724222 412 Pfam PF01743 Poly A polymerase head domain 28 147 3.4E-18 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APJL_0927 22cbdceafac389d5bb7c79d137724222 412 Pfam PF01966 HD domain 256 339 2.8E-10 T 11-10-2018 IPR006674 HD domain APJL_0927 22cbdceafac389d5bb7c79d137724222 412 TIGRFAM TIGR00277 HDIG: HDIG domain 256 325 2.7E-7 T 11-10-2018 IPR006675 HDIG domain APJL_0927 22cbdceafac389d5bb7c79d137724222 412 Gene3D G3DSA:1.10.3090.10 147 406 2.9E-40 T 11-10-2018 APJL_0927 22cbdceafac389d5bb7c79d137724222 412 Gene3D G3DSA:3.30.460.10 14 146 5.1E-29 T 11-10-2018 APJL_0927 22cbdceafac389d5bb7c79d137724222 412 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 174 237 3.3E-16 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APJL_0927 22cbdceafac389d5bb7c79d137724222 412 SUPERFAMILY SSF81301 18 144 2.62E-31 T 11-10-2018 APJL_0927 22cbdceafac389d5bb7c79d137724222 412 SUPERFAMILY SSF81891 145 389 7.98E-56 T 11-10-2018 APJL_1850 a06a611c5f38a15b6a4bf642f4656acb 387 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 300 1.2E-14 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APJL_1850 a06a611c5f38a15b6a4bf642f4656acb 387 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 368 7.8E-52 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APJL_1850 a06a611c5f38a15b6a4bf642f4656acb 387 Gene3D G3DSA:2.40.50.100 59 221 1.9E-86 T 11-10-2018 APJL_1850 a06a611c5f38a15b6a4bf642f4656acb 387 Gene3D G3DSA:2.40.420.20 43 368 1.9E-86 T 11-10-2018 APJL_1850 a06a611c5f38a15b6a4bf642f4656acb 387 Gene3D G3DSA:1.10.287.470 93 184 1.9E-86 T 11-10-2018 APJL_1850 a06a611c5f38a15b6a4bf642f4656acb 387 Gene3D G3DSA:2.40.30.170 48 307 1.9E-86 T 11-10-2018 APJL_1850 a06a611c5f38a15b6a4bf642f4656acb 387 SUPERFAMILY SSF111369 51 298 3.27E-28 T 11-10-2018 APJL_1957 42a175d98963f39721b648e24135386c 504 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1957 42a175d98963f39721b648e24135386c 504 Pfam PF00005 ABC transporter 278 433 5.2E-19 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1957 42a175d98963f39721b648e24135386c 504 Gene3D G3DSA:3.40.50.300 1 240 1.1E-55 T 11-10-2018 APJL_1957 42a175d98963f39721b648e24135386c 504 SUPERFAMILY SSF52540 258 487 1.97E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1957 42a175d98963f39721b648e24135386c 504 Pfam PF00005 ABC transporter 20 171 8.7E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1957 42a175d98963f39721b648e24135386c 504 Gene3D G3DSA:3.40.50.300 256 504 2.2E-39 T 11-10-2018 APJL_1957 42a175d98963f39721b648e24135386c 504 TIGRFAM TIGR02633 xylG: D-xylose ABC transporter, ATP-binding protein 4 502 3.1E-273 T 11-10-2018 IPR013455 ABC transporter, D-xylose, ATP-binding protein GO:0005524|GO:0015614|GO:0015753|GO:0016020 APJL_1957 42a175d98963f39721b648e24135386c 504 SUPERFAMILY SSF52540 4 229 1.93E-52 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1957 42a175d98963f39721b648e24135386c 504 SMART SM00382 286 482 2.3E-6 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1957 42a175d98963f39721b648e24135386c 504 SMART SM00382 29 219 1.4E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1870 3d9894b1d1c0d340c3d5b092a6c6d5cc 318 Pfam PF00174 Oxidoreductase molybdopterin binding domain 90 251 6.6E-30 T 11-10-2018 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 APJL_1870 3d9894b1d1c0d340c3d5b092a6c6d5cc 318 SUPERFAMILY SSF56524 60 314 2.35E-93 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 APJL_1870 3d9894b1d1c0d340c3d5b092a6c6d5cc 318 Hamap MF_01206 Protein-methionine-sulfoxide reductase catalytic subunit MsrP [msrP]. 2 318 53.692 T 11-10-2018 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 APJL_1870 3d9894b1d1c0d340c3d5b092a6c6d5cc 318 Gene3D G3DSA:3.90.420.10 52 318 4.8E-115 T 11-10-2018 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily GO:0042128 Reactome: R-HSA-1614517 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 332 9.6E-65 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 Gene3D G3DSA:3.50.50.100 2 402 1.7E-113 T 11-10-2018 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 SUPERFAMILY SSF51905 5 339 2.09E-30 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 7.8E-13 T 11-10-2018 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 113 131 7.8E-13 T 11-10-2018 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 7.8E-13 T 11-10-2018 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 7.8E-13 T 11-10-2018 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 2.6E-7 T 11-10-2018 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.6E-7 T 11-10-2018 APJL_1282 b733eafb9eadf6d4cf75c3872486781d 428 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 2.6E-7 T 11-10-2018 APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 Pfam PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B 91 241 1.9E-33 T 11-10-2018 IPR001677 Transferrin-binding protein, C-lobe/N-lobe beta barrel domain APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 Pfam PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B 347 482 1.0E-34 T 11-10-2018 IPR001677 Transferrin-binding protein, C-lobe/N-lobe beta barrel domain APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 Gene3D G3DSA:2.40.128.240 253 341 7.1E-35 T 11-10-2018 IPR038197 TbpB, C-lobe handle domain superfamily APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 Pfam PF17484 N-Lobe handle Tf-binding protein B 1 88 3.3E-7 T 11-10-2018 IPR035313 Transferrin-binding protein B, N-lobe handle APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 SUPERFAMILY SSF56925 306 482 2.9E-36 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 Gene3D G3DSA:2.40.128.250 4 86 1.3E-42 T 11-10-2018 IPR038669 TbpB, N-lobe handle domain superfamily APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 Gene3D G3DSA:2.40.160.90 342 486 1.1E-44 T 11-10-2018 APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 Gene3D G3DSA:2.40.160.90 87 252 1.7E-51 T 11-10-2018 APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 SUPERFAMILY SSF56925 57 241 1.1E-31 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_1598 e0729a4b9817599593abe44e03bd99cb 486 Pfam PF17483 C-lobe handle domain of Tf-binding protein B 252 342 2.9E-28 T 11-10-2018 IPR035316 Transferrin-binding protein B, C-lobe handle domain APJL_0482 1a4eecb300d35bf90b84424495870e59 936 Gene3D G3DSA:3.40.50.12470 559 803 2.7E-174 T 11-10-2018 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 Gene3D G3DSA:3.40.50.11610 724 931 2.7E-174 T 11-10-2018 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 13 51 4.0E-15 T 11-10-2018 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 Gene3D G3DSA:1.10.287.1150 82 166 1.2E-18 T 11-10-2018 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 SUPERFAMILY SSF52518 121 540 6.4E-84 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0482 1a4eecb300d35bf90b84424495870e59 936 Gene3D G3DSA:3.40.50.970 168 534 2.1E-146 T 11-10-2018 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 PIRSF PIRSF000157 1 936 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 SUPERFAMILY SSF52518 577 794 6.77E-54 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0482 1a4eecb300d35bf90b84424495870e59 936 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 791 934 2.8E-56 T 11-10-2018 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 SMART SM00861 594 787 1.2E-63 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APJL_0482 1a4eecb300d35bf90b84424495870e59 936 Pfam PF00676 Dehydrogenase E1 component 221 517 2.8E-53 T 11-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 934 0.0 T 11-10-2018 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 APJL_0482 1a4eecb300d35bf90b84424495870e59 936 Pfam PF02779 Transketolase, pyrimidine binding domain 594 788 4.3E-67 T 11-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 Pfam PF00672 HAMP domain 181 230 1.2E-8 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 SUPERFAMILY SSF55874 442 566 3.01E-18 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 SMART SM00304 181 234 1.3E-6 T 11-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 Gene3D G3DSA:1.20.120.960 43 153 8.4E-12 T 11-10-2018 APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 Gene3D G3DSA:1.10.287.130 179 259 1.1E-5 T 11-10-2018 APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 Gene3D G3DSA:3.30.565.10 435 568 9.3E-27 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 479 566 1.3E-9 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 37 135 6.2E-21 T 11-10-2018 IPR029095 NarX-like, N-terminal APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 SMART SM00387 475 569 2.4E-10 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 SUPERFAMILY SSF158472 182 232 1.06E-6 T 11-10-2018 APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 Pfam PF07730 Histidine kinase 369 434 1.4E-15 T 11-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 PIRSF PIRSF003167 3 311 9.0E-64 T 11-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 APJL_0489 aa4783fc1b1f44af640c7e74259dc270 571 PIRSF PIRSF003167 299 570 8.3E-95 T 11-10-2018 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing GO:0000155|GO:0000160|GO:0004673|GO:0016021 APJL_0413 f28e5a4776f3de3a8ba11a34046bdec1 271 Pfam PF08282 haloacid dehalogenase-like hydrolase 8 264 4.5E-61 T 11-10-2018 APJL_0413 f28e5a4776f3de3a8ba11a34046bdec1 271 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 8 264 4.1E-52 T 11-10-2018 IPR000150 Cof family GO:0016787 APJL_0413 f28e5a4776f3de3a8ba11a34046bdec1 271 SUPERFAMILY SSF56784 4 266 1.19E-59 T 11-10-2018 IPR036412 HAD-like superfamily APJL_0413 f28e5a4776f3de3a8ba11a34046bdec1 271 ProSitePatterns PS01229 Hypothetical cof family signature 2. 216 238 - T 11-10-2018 APJL_0413 f28e5a4776f3de3a8ba11a34046bdec1 271 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 7 233 1.4E-28 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 APJL_0413 f28e5a4776f3de3a8ba11a34046bdec1 271 Gene3D G3DSA:3.30.1240.10 86 190 5.1E-30 T 11-10-2018 APJL_0413 f28e5a4776f3de3a8ba11a34046bdec1 271 ProSitePatterns PS01228 Hypothetical cof family signature 1. 7 18 - T 11-10-2018 APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 Gene3D G3DSA:3.30.470.20 84 328 7.7E-89 T 11-10-2018 APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 SUPERFAMILY SSF52440 8 80 6.62E-13 T 11-10-2018 IPR016185 Pre-ATP-grasp domain superfamily APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 SUPERFAMILY SSF51246 285 361 6.43E-21 T 11-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 9 332 31.755 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 SUPERFAMILY SSF56059 84 281 1.15E-53 T 11-10-2018 APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 Pfam PF02222 ATP-grasp domain 93 261 1.3E-54 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 10 337 5.8E-111 T 11-10-2018 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 Gene3D G3DSA:3.40.50.20 8 75 5.8E-23 T 11-10-2018 APJL_0651 2131327fb1af24977fc1f68ba23c86ca 362 Gene3D G3DSA:3.30.1490.20 99 160 7.7E-89 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_2054 f249c17a8bfcd8d720ff1c655e9c496b 225 SUPERFAMILY SSF53271 47 223 1.44E-35 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_2054 f249c17a8bfcd8d720ff1c655e9c496b 225 Pfam PF00156 Phosphoribosyl transferase domain 136 223 1.0E-6 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APJL_2054 f249c17a8bfcd8d720ff1c655e9c496b 225 Gene3D G3DSA:3.40.50.2020 100 225 1.1E-17 T 11-10-2018 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 SUPERFAMILY SSF50104 121 174 1.6E-19 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 SMART SM00739 121 148 3.6E-7 T 11-10-2018 IPR005824 KOW APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 3 174 4.5E-70 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 1 175 22.662 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 Gene3D G3DSA:3.30.70.940 1 115 3.8E-44 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 Pfam PF02357 Transcription termination factor nusG 1 106 3.5E-26 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 PRINTS PR00338 Transcription termination factor NUSG signature 151 167 4.3E-22 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 PRINTS PR00338 Transcription termination factor NUSG signature 133 148 4.3E-22 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 PRINTS PR00338 Transcription termination factor NUSG signature 55 67 4.3E-22 T 11-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 SMART SM00738 1 109 6.9E-46 T 11-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 SUPERFAMILY SSF82679 1 111 1.19E-38 T 11-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 ProSitePatterns PS01014 Transcription termination factor nusG signature. 158 167 - T 11-10-2018 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 Pfam PF00467 KOW motif 124 156 5.0E-9 T 11-10-2018 IPR005824 KOW APJL_1750 b4e350a0e43514c0b10ab91279fcf1a0 176 Gene3D G3DSA:2.30.30.30 116 174 5.5E-27 T 11-10-2018 IPR014722 Ribosomal protein L2, domain 2 APJL_2030 9b4a82bf0664b34a48e472247238913f 258 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 23 257 39.138 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APJL_2030 9b4a82bf0664b34a48e472247238913f 258 Gene3D G3DSA:3.40.50.150 38 258 6.5E-74 T 11-10-2018 APJL_2030 9b4a82bf0664b34a48e472247238913f 258 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 165 179 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 APJL_2030 9b4a82bf0664b34a48e472247238913f 258 Pfam PF01209 ubiE/COQ5 methyltransferase family 23 257 1.4E-102 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APJL_2030 9b4a82bf0664b34a48e472247238913f 258 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 32 257 2.6E-88 T 11-10-2018 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 APJL_2030 9b4a82bf0664b34a48e472247238913f 258 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 43 58 - T 11-10-2018 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 APJL_2030 9b4a82bf0664b34a48e472247238913f 258 SUPERFAMILY SSF53335 26 256 2.32E-51 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1021 2f8803f51a767ff3f8cb83c8bddd8ee1 625 SUPERFAMILY SSF54534 225 357 1.96E-29 T 11-10-2018 APJL_1021 2f8803f51a767ff3f8cb83c8bddd8ee1 625 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 296 317 - T 11-10-2018 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Reactome: R-HSA-1169408|Reactome: R-HSA-6804756|Reactome: R-HSA-6811555|Reactome: R-HSA-936440 APJL_1021 2f8803f51a767ff3f8cb83c8bddd8ee1 625 Gene3D G3DSA:1.10.4030.30 39 226 2.9E-13 T 11-10-2018 APJL_1021 2f8803f51a767ff3f8cb83c8bddd8ee1 625 Pfam PF13145 PPIC-type PPIASE domain 248 371 1.1E-21 T 11-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 APJL_1021 2f8803f51a767ff3f8cb83c8bddd8ee1 625 Pfam PF13624 SurA N-terminal domain 1 165 4.0E-43 T 11-10-2018 APJL_1021 2f8803f51a767ff3f8cb83c8bddd8ee1 625 Gene3D G3DSA:3.10.50.40 268 359 4.2E-30 T 11-10-2018 APJL_1021 2f8803f51a767ff3f8cb83c8bddd8ee1 625 SUPERFAMILY SSF109998 39 245 2.04E-26 T 11-10-2018 IPR027304 Trigger factor/SurA domain superfamily APJL_1021 2f8803f51a767ff3f8cb83c8bddd8ee1 625 Gene3D G3DSA:1.10.4030.30 240 371 4.2E-30 T 11-10-2018 APJL_0990 76fbe9b7e63a160249e80f635089bcb1 163 Pfam PF03061 Thioesterase superfamily 29 101 2.5E-17 T 11-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 APJL_0990 76fbe9b7e63a160249e80f635089bcb1 163 SUPERFAMILY SSF54637 11 141 7.95E-38 T 11-10-2018 IPR029069 HotDog domain superfamily APJL_0990 76fbe9b7e63a160249e80f635089bcb1 163 Gene3D G3DSA:3.10.129.10 3 161 2.0E-42 T 11-10-2018 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 1.2E-35 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 6 71 4.0E-32 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 SUPERFAMILY SSF50249 6 82 1.54E-31 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 Pfam PF00366 Ribosomal protein S17 10 76 5.8E-32 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 5 80 23.92 T 11-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 2.8E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 2.8E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 2.8E-12 T 11-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 Gene3D G3DSA:2.40.50.140 1 84 2.6E-36 T 11-10-2018 APJL_1804 a83eaa51cc9b22d296b4ad309cca754a 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 11-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_0776 42951f3b6ba333ab36e86020422d089e 884 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 5 883 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APJL_0776 42951f3b6ba333ab36e86020422d089e 884 SUPERFAMILY SSF52518 470 696 1.77E-91 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0776 42951f3b6ba333ab36e86020422d089e 884 PIRSF PIRSF000156 1 884 0.0 T 11-10-2018 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 APJL_0776 42951f3b6ba333ab36e86020422d089e 884 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 103 294 1.3E-10 T 11-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 APJL_0776 42951f3b6ba333ab36e86020422d089e 884 Gene3D G3DSA:3.40.50.920 703 884 1.2E-69 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APJL_0776 42951f3b6ba333ab36e86020422d089e 884 Gene3D G3DSA:3.40.50.970 55 467 1.5E-127 T 11-10-2018 APJL_0776 42951f3b6ba333ab36e86020422d089e 884 Gene3D G3DSA:3.40.50.970 469 702 7.4E-103 T 11-10-2018 APJL_0776 42951f3b6ba333ab36e86020422d089e 884 SUPERFAMILY SSF52518 56 463 3.04E-132 T 11-10-2018 IPR029061 Thiamin diphosphate-binding fold APJL_0776 42951f3b6ba333ab36e86020422d089e 884 SUPERFAMILY SSF52922 698 883 1.43E-59 T 11-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 APJL_1797 bbfa7dedfc3e3478fa7d34e3b18c47b7 101 Pfam PF00276 Ribosomal protein L23 9 95 2.1E-33 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 APJL_1797 bbfa7dedfc3e3478fa7d34e3b18c47b7 101 Gene3D G3DSA:3.30.70.330 1 100 7.1E-39 T 11-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily APJL_1797 bbfa7dedfc3e3478fa7d34e3b18c47b7 101 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 11-10-2018 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1797 bbfa7dedfc3e3478fa7d34e3b18c47b7 101 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.288 T 11-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 APJL_1797 bbfa7dedfc3e3478fa7d34e3b18c47b7 101 SUPERFAMILY SSF54189 2 92 2.19E-31 T 11-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 SUPERFAMILY SSF53720 15 467 3.27E-79 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 Pfam PF00465 Iron-containing alcohol dehydrogenase 471 860 1.4E-115 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 643 671 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 Gene3D G3DSA:1.20.1090.10 655 871 3.7E-67 T 11-10-2018 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 Gene3D G3DSA:3.40.50.1970 464 654 9.4E-63 T 11-10-2018 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 Gene3D G3DSA:3.40.605.10 17 458 1.3E-171 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 Gene3D G3DSA:3.40.309.10 226 419 1.3E-171 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 729 749 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 Pfam PF00171 Aldehyde dehydrogenase family 12 275 5.6E-24 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 PIRSF PIRSF000111 1 871 0.0 T 11-10-2018 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00592+1.1.1.1|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 APJL_1029 9996c6d9186ff04a5bae18cd073b00ed 871 SUPERFAMILY SSF56796 465 870 1.24E-117 T 11-10-2018 APJL_0752 cfa09e1fbfc7851b0a4befe74583bb6b 476 SUPERFAMILY SSF56801 11 442 7.33E-82 T 11-10-2018 APJL_0752 cfa09e1fbfc7851b0a4befe74583bb6b 476 ProSitePatterns PS00455 Putative AMP-binding domain signature. 143 154 - T 11-10-2018 IPR020845 AMP-binding, conserved site APJL_0752 cfa09e1fbfc7851b0a4befe74583bb6b 476 Gene3D G3DSA:3.40.50.12780 10 362 1.1E-60 T 11-10-2018 APJL_0752 cfa09e1fbfc7851b0a4befe74583bb6b 476 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 41 459 2.2E-136 T 11-10-2018 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 APJL_0752 cfa09e1fbfc7851b0a4befe74583bb6b 476 Gene3D G3DSA:3.30.300.30 363 465 5.5E-13 T 11-10-2018 APJL_0752 cfa09e1fbfc7851b0a4befe74583bb6b 476 Pfam PF00501 AMP-binding enzyme 13 366 7.5E-44 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APJL_0009 649dbfbba2fb1e275492db9d328354cd 351 Pfam PF08496 Peptidase family S49 N-terminal 4 160 1.7E-53 T 11-10-2018 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 APJL_0009 649dbfbba2fb1e275492db9d328354cd 351 SUPERFAMILY SSF52096 103 301 2.23E-32 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_0009 649dbfbba2fb1e275492db9d328354cd 351 Pfam PF01343 Peptidase family S49 164 312 5.1E-50 T 11-10-2018 IPR002142 Peptidase S49 GO:0006508|GO:0008233 APJL_0009 649dbfbba2fb1e275492db9d328354cd 351 Gene3D G3DSA:3.40.1750.20 204 268 1.7E-44 T 11-10-2018 APJL_0009 649dbfbba2fb1e275492db9d328354cd 351 Gene3D G3DSA:3.90.226.10 133 303 1.7E-44 T 11-10-2018 APJL_1322 cf57b33808ba727cb040632d0c645ccb 439 Gene3D G3DSA:1.20.1250.20 22 435 1.5E-68 T 11-10-2018 APJL_1322 cf57b33808ba727cb040632d0c645ccb 439 SUPERFAMILY SSF103473 16 434 7.72E-74 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_1322 cf57b33808ba727cb040632d0c645ccb 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 124 149 - T 11-10-2018 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 APJL_1322 cf57b33808ba727cb040632d0c645ccb 439 Pfam PF07690 Major Facilitator Superfamily 35 366 9.4E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_1034 2e929931e0728611fedad2c20e987dc1 422 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 4 414 1.1E-153 T 11-10-2018 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 APJL_1034 2e929931e0728611fedad2c20e987dc1 422 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 1.8E-22 T 11-10-2018 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 APJL_1034 2e929931e0728611fedad2c20e987dc1 422 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 414 8.4E-72 T 11-10-2018 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 APJL_1034 2e929931e0728611fedad2c20e987dc1 422 Pfam PF07670 Nucleoside recognition 99 195 6.4E-10 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 262 277 - T 11-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 Gene3D G3DSA:3.10.20.70 2 107 8.8E-34 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 98 2.5E-25 T 11-10-2018 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 Pfam PF00120 Glutamine synthetase, catalytic domain 106 469 5.0E-137 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 389 401 - T 11-10-2018 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 SUPERFAMILY SSF54368 3 104 2.09E-30 T 11-10-2018 IPR036651 Glutamine synthetase, N-terminal domain superfamily GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 Gene3D G3DSA:3.30.590.10 108 460 1.0E-147 T 11-10-2018 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 SUPERFAMILY SSF55931 105 470 3.83E-136 T 11-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 ProSitePatterns PS00180 Glutamine synthetase signature 1. 53 71 - T 11-10-2018 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 5 470 8.4E-210 T 11-10-2018 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APJL_1987 6748e1fb613e8fae2cda98792971f05f 471 SMART SM01230 105 382 9.5E-147 T 11-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 PIRSF PIRSF001373 1 516 8.0E-242 T 11-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 SUPERFAMILY SSF56322 5 510 3.01E-150 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 Pfam PF04715 Anthranilate synthase component I, N terminal region 15 190 7.5E-12 T 11-10-2018 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 Pfam PF00425 chorismate binding enzyme 242 502 3.2E-84 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 12 515 1.5E-234 T 11-10-2018 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 Gene3D G3DSA:3.60.120.10 1 516 4.8E-165 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 PRINTS PR00095 Anthranilate synthase component I signature 459 473 9.3E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 PRINTS PR00095 Anthranilate synthase component I signature 444 458 9.3E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 PRINTS PR00095 Anthranilate synthase component I signature 350 363 9.3E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1183 05837d4340c1e36f470dd9eaf1927950 516 PRINTS PR00095 Anthranilate synthase component I signature 364 377 9.3E-23 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_0487 eaa6010fc0414dbbc21940071200c47f 283 PRINTS PR01021 OMPA domain signature 175 190 2.9E-18 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_0487 eaa6010fc0414dbbc21940071200c47f 283 PRINTS PR01021 OMPA domain signature 145 167 2.9E-18 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_0487 eaa6010fc0414dbbc21940071200c47f 283 PRINTS PR01021 OMPA domain signature 190 206 2.9E-18 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_0487 eaa6010fc0414dbbc21940071200c47f 283 Pfam PF00691 OmpA family 144 230 1.5E-20 T 11-10-2018 IPR006665 OmpA-like domain APJL_0487 eaa6010fc0414dbbc21940071200c47f 283 Pfam PF04355 SmpA / OmlA family 55 123 4.7E-17 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 APJL_0487 eaa6010fc0414dbbc21940071200c47f 283 SUPERFAMILY SSF103088 136 250 4.97E-28 T 11-10-2018 IPR036737 OmpA-like domain superfamily APJL_0487 eaa6010fc0414dbbc21940071200c47f 283 Gene3D G3DSA:3.30.1330.60 132 254 1.6E-36 T 11-10-2018 IPR036737 OmpA-like domain superfamily APJL_0487 eaa6010fc0414dbbc21940071200c47f 283 Gene3D G3DSA:3.30.1450.10 55 127 1.7E-5 T 11-10-2018 IPR037873 BamE-like APJL_1839 908f1799458ae25d978529d861569973 689 SMART SM00836 585 688 0.0033 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APJL_1839 908f1799458ae25d978529d861569973 689 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 688 26.453 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1839 908f1799458ae25d978529d861569973 689 Pfam PF05746 DALR anticodon binding domain 582 679 2.3E-7 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APJL_1839 908f1799458ae25d978529d861569973 689 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 689 0.0 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1839 908f1799458ae25d978529d861569973 689 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 551 3.2E-210 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1839 908f1799458ae25d978529d861569973 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 9.2E-36 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1839 908f1799458ae25d978529d861569973 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 9.2E-36 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1839 908f1799458ae25d978529d861569973 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 394 413 9.2E-36 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1839 908f1799458ae25d978529d861569973 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 318 334 9.2E-36 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1839 908f1799458ae25d978529d861569973 689 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 246 261 9.2E-36 T 11-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1839 908f1799458ae25d978529d861569973 689 SUPERFAMILY SSF109604 339 493 1.46E-17 T 11-10-2018 APJL_1153 c749bfe6d66bfba04235ef74479482a6 184 Gene3D G3DSA:3.30.420.10 1 183 1.9E-75 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1153 c749bfe6d66bfba04235ef74479482a6 184 SUPERFAMILY SSF53098 5 181 3.92E-47 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1153 c749bfe6d66bfba04235ef74479482a6 184 SMART SM00479 8 181 3.4E-23 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APJL_1153 c749bfe6d66bfba04235ef74479482a6 184 Pfam PF00929 Exonuclease 10 171 3.1E-39 T 11-10-2018 IPR013520 Exonuclease, RNase T/DNA polymerase III APJL_1153 c749bfe6d66bfba04235ef74479482a6 184 Hamap MF_00045 Oligoribonuclease [orn]. 4 182 42.947 T 11-10-2018 IPR022894 Oligoribonuclease GO:0000175 APJL_0942 79bc460e12d705f79a60dd38f526e8c1 150 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 4.5E-47 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type APJL_0942 79bc460e12d705f79a60dd38f526e8c1 150 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site APJL_0942 79bc460e12d705f79a60dd38f526e8c1 150 Gene3D G3DSA:1.10.10.10 1 143 3.7E-52 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0942 79bc460e12d705f79a60dd38f526e8c1 150 Pfam PF02082 Transcriptional regulator 1 83 3.6E-28 T 11-10-2018 IPR000944 Transcription regulator Rrf2-type APJL_0942 79bc460e12d705f79a60dd38f526e8c1 150 SUPERFAMILY SSF46785 2 133 8.4E-35 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1128 190a6cf23ee687a4b09b7571a24f6c20 226 SMART SM00927 55 153 1.3E-65 T 11-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 APJL_1128 190a6cf23ee687a4b09b7571a24f6c20 226 SUPERFAMILY SSF52980 7 222 9.65E-81 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APJL_1128 190a6cf23ee687a4b09b7571a24f6c20 226 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 8 221 2.3E-100 T 11-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 APJL_1128 190a6cf23ee687a4b09b7571a24f6c20 226 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 226 137.312 T 11-10-2018 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 APJL_1128 190a6cf23ee687a4b09b7571a24f6c20 226 Gene3D G3DSA:3.40.600.10 2 222 8.3E-55 T 11-10-2018 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily GO:0003677|GO:0004519 APJL_1128 190a6cf23ee687a4b09b7571a24f6c20 226 Pfam PF02976 DNA mismatch repair enzyme MutH 55 153 7.1E-35 T 11-10-2018 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 SMART SM00436 128 223 2.1E-35 T 11-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 Gene3D G3DSA:1.10.460.10 162 599 4.1E-169 T 11-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 193 211 2.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 404 420 2.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 522 536 2.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 324 333 2.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 98 111 2.3E-25 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 SUPERFAMILY SSF56712 2 604 8.89E-183 T 11-10-2018 IPR023405 DNA topoisomerase, type IA, core domain APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 TIGRFAM TIGR01056 topB: DNA topoisomerase III 2 617 2.1E-252 T 11-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 Pfam PF01131 DNA topoisomerase 158 594 1.8E-114 T 11-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 Gene3D G3DSA:2.70.20.10 217 489 4.1E-169 T 11-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 Gene3D G3DSA:3.40.50.140 1 156 2.2E-58 T 11-10-2018 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 Pfam PF01751 Toprim domain 3 135 1.5E-14 T 11-10-2018 IPR006171 TOPRIM domain APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 SMART SM00493 1 124 1.3E-25 T 11-10-2018 IPR006171 TOPRIM domain APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 Hamap MF_00953 DNA topoisomerase 3 [topB]. 1 638 63.686 T 11-10-2018 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 Gene3D G3DSA:1.10.290.10 290 418 4.1E-169 T 11-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 SMART SM00437 281 559 1.1E-102 T 11-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 APJL_0746 d1347066462b20f7f794c69b14e0eba5 638 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 318 333 - T 11-10-2018 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 Gene3D G3DSA:1.10.1060.10 303 391 1.5E-5 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 SUPERFAMILY SSF100950 65 296 4.18E-38 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 TIGRFAM TIGR00273 TIGR00273: iron-sulfur cluster-binding protein 20 454 3.7E-208 T 11-10-2018 IPR004452 4Fe-4S binding protein GO:0019516 APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 SUPERFAMILY SSF46548 274 392 1.03E-18 T 11-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 Pfam PF13183 4Fe-4S dicluster domain 310 377 3.2E-11 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 Pfam PF11870 Domain of unknown function (DUF3390) 395 469 6.5E-12 T 11-10-2018 IPR024569 4Fe-4S binding protein, C-terminal APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 Gene3D G3DSA:3.40.50.10420 124 280 1.1E-12 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 Pfam PF02589 LUD domain 73 295 5.1E-50 T 11-10-2018 IPR003741 LUD domain APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 313 324 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_0472 a506957b0b1861ea1e6ae2054afe0e96 469 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 363 374 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 SMART SM00316 37 119 4.0E-12 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 Pfam PF12111 Polyribonucleotide phosphorylase C terminal 956 991 9.5E-16 T 11-10-2018 IPR021968 Polyribonucleotide phosphorylase C-terminal APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 Pfam PF00575 S1 RNA binding domain 36 118 7.1E-15 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 Gene3D G3DSA:3.40.1260.20 400 508 3.0E-39 T 11-10-2018 APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 424 6.4E-172 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 Gene3D G3DSA:2.40.50.140 31 125 6.6E-33 T 11-10-2018 APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 Pfam PF10150 Ribonuclease E/G family 121 390 1.4E-94 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 Hamap MF_00970 Ribonuclease E [rne]. 1 980 34.325 T 11-10-2018 IPR028878 Ribonuclease E GO:0006396|GO:0008995 APJL_1468 405c6f6e49ccb147ef881d7998e8ef30 995 SUPERFAMILY SSF50249 40 124 1.53E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0970 643b576caec22b6cb227acd094bc17c6 163 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 45 150 2.2E-37 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APJL_0970 643b576caec22b6cb227acd094bc17c6 163 SUPERFAMILY SSF55486 5 155 9.03E-50 T 11-10-2018 APJL_0970 643b576caec22b6cb227acd094bc17c6 163 Gene3D G3DSA:3.40.390.30 1 160 3.4E-57 T 11-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 APJL_0970 643b576caec22b6cb227acd094bc17c6 163 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 119 129 - T 11-10-2018 IPR020549 Endoribonuclease YbeY, conserved site APJL_0970 643b576caec22b6cb227acd094bc17c6 163 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 5 153 24.752 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APJL_0970 643b576caec22b6cb227acd094bc17c6 163 Pfam PF02130 Uncharacterized protein family UPF0054 27 149 4.9E-40 T 11-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 APJL_1220 404afe795091d5df9087efedf99762c1 85 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 1 58 5.6E-14 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APJL_1220 404afe795091d5df9087efedf99762c1 85 TIGRFAM TIGR01552 phd_fam: prevent-host-death family protein 4 45 1.2E-7 T 11-10-2018 APJL_1220 404afe795091d5df9087efedf99762c1 85 SUPERFAMILY SSF143120 1 48 1.44E-12 T 11-10-2018 IPR036165 YefM-like superfamily APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 Gene3D G3DSA:3.40.50.740 303 471 1.3E-53 T 11-10-2018 APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 802 0.0 T 11-10-2018 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 SUPERFAMILY SSF50692 617 803 2.28E-42 T 11-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 Gene3D G3DSA:3.40.228.10 1 272 8.1E-75 T 11-10-2018 APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 Pfam PF01568 Molydopterin dinucleotide binding domain 681 796 6.7E-16 T 11-10-2018 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0043546|GO:0055114 APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 Pfam PF00384 Molybdopterin oxidoreductase 2 379 1.2E-21 T 11-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 SUPERFAMILY SSF53706 1 638 1.12E-232 T 11-10-2018 APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 Gene3D G3DSA:2.40.40.20 629 803 7.5E-68 T 11-10-2018 APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 Gene3D G3DSA:3.40.228.10 480 628 6.3E-25 T 11-10-2018 APJL_0905 99114a7bdb186e0f56f33947d9dc74e2 807 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 715 742 - T 11-10-2018 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 APJL_0399 945211baa0378d3d59978343625a64b8 428 PIRSF PIRSF000141 1 428 1.2E-186 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 APJL_0399 945211baa0378d3d59978343625a64b8 428 Gene3D G3DSA:3.50.50.60 369 414 3.9E-6 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0399 945211baa0378d3d59978343625a64b8 428 Pfam PF00890 FAD binding domain 4 412 4.6E-70 T 11-10-2018 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 APJL_0399 945211baa0378d3d59978343625a64b8 428 Hamap MF_00753 Anaerobic glycerol-3-phosphate dehydrogenase subunit B [glpB]. 1 428 53.011 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 APJL_0399 945211baa0378d3d59978343625a64b8 428 Gene3D G3DSA:3.50.50.60 2 125 1.1E-7 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0399 945211baa0378d3d59978343625a64b8 428 TIGRFAM TIGR03378 glycerol3P_GlpB: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit 3 424 7.8E-183 T 11-10-2018 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit GO:0004368|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 APJL_0399 945211baa0378d3d59978343625a64b8 428 SUPERFAMILY SSF51905 1 418 6.49E-24 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0864 f234307757ceaea7e9a6cb5b3a5cfc2a 382 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 21 355 1.0E-10 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APJL_0864 f234307757ceaea7e9a6cb5b3a5cfc2a 382 Gene3D G3DSA:3.20.20.210 11 382 4.1E-112 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_0864 f234307757ceaea7e9a6cb5b3a5cfc2a 382 SUPERFAMILY SSF51726 19 381 3.4E-74 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 PIRSF PIRSF000130 1 487 3.7E-198 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 1.3E-160 T 11-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 SMART SM01240 7 473 0.0 T 11-10-2018 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 Gene3D G3DSA:3.20.20.70 1 486 7.0E-209 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 82.76 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 11-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 Pfam PF00571 CBS domain 95 138 7.2E-10 T 11-10-2018 IPR000644 CBS domain APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 Pfam PF00571 CBS domain 157 203 4.7E-6 T 11-10-2018 IPR000644 CBS domain APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 SUPERFAMILY SSF54631 95 203 2.02E-26 T 11-10-2018 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 SUPERFAMILY SSF51412 2 477 3.79E-125 T 11-10-2018 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 8.3E-195 T 11-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 SMART SM00116 158 206 2.0E-8 T 11-10-2018 IPR000644 CBS domain APJL_0587 7dee8e87ee8ceffec4732acaf78e1f69 487 SMART SM00116 96 144 1.0E-10 T 11-10-2018 IPR000644 CBS domain APJL_1992 248658fc3f07aecd4c17c8783ed001b2 142 Pfam PF00892 EamA-like transporter family 5 138 1.3E-24 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_1992 248658fc3f07aecd4c17c8783ed001b2 142 SUPERFAMILY SSF103481 39 140 1.26E-18 T 11-10-2018 APJL_0953 2c93be92fdbabf7082fcabd21bf0c064 314 Pfam PF05175 Methyltransferase small domain 141 227 3.9E-18 T 11-10-2018 IPR007848 Methyltransferase small domain GO:0008168 APJL_0953 2c93be92fdbabf7082fcabd21bf0c064 314 SUPERFAMILY SSF53335 23 299 4.18E-49 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0953 2c93be92fdbabf7082fcabd21bf0c064 314 PIRSF PIRSF037167 7 314 1.1E-146 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 APJL_0953 2c93be92fdbabf7082fcabd21bf0c064 314 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 22 312 9.3E-96 T 11-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 APJL_0953 2c93be92fdbabf7082fcabd21bf0c064 314 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 14 308 50.751 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 APJL_0953 2c93be92fdbabf7082fcabd21bf0c064 314 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 21 303 1.0E-131 T 11-10-2018 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 APJL_0953 2c93be92fdbabf7082fcabd21bf0c064 314 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 212 218 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_0953 2c93be92fdbabf7082fcabd21bf0c064 314 Gene3D G3DSA:3.40.50.150 106 286 1.8E-45 T 11-10-2018 APJL_0064 7f5168259906eaf59dbd43558e1e7df6 533 SUPERFAMILY SSF53850 25 529 3.8E-162 T 11-10-2018 APJL_0064 7f5168259906eaf59dbd43558e1e7df6 533 Gene3D G3DSA:3.90.76.10 48 206 8.7E-191 T 11-10-2018 APJL_0064 7f5168259906eaf59dbd43558e1e7df6 533 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 448 3.7E-111 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APJL_0064 7f5168259906eaf59dbd43558e1e7df6 533 Gene3D G3DSA:3.10.105.10 288 506 8.7E-191 T 11-10-2018 APJL_0064 7f5168259906eaf59dbd43558e1e7df6 533 PIRSF PIRSF002741 9 532 8.3E-128 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_0064 7f5168259906eaf59dbd43558e1e7df6 533 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 75 97 - T 11-10-2018 IPR023765 Solute-binding protein family 5, conserved site APJL_0064 7f5168259906eaf59dbd43558e1e7df6 533 Gene3D G3DSA:3.40.190.10 207 519 8.7E-191 T 11-10-2018 APJL_1700 be0a0518c2b3f8d4d38a63d80d2be11c 139 Pfam PF05025 RbsD / FucU transport protein family 1 137 1.2E-48 T 11-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 APJL_1700 be0a0518c2b3f8d4d38a63d80d2be11c 139 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 139 33.746 T 11-10-2018 IPR023064 D-ribose pyranase GO:0016872 APJL_1700 be0a0518c2b3f8d4d38a63d80d2be11c 139 Gene3D G3DSA:3.40.1650.10 8 136 6.5E-40 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 APJL_1700 be0a0518c2b3f8d4d38a63d80d2be11c 139 SUPERFAMILY SSF102546 1 139 2.75E-45 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 APJL_1696 e51c25e784d2476d057877041c297110 449 PIRSF PIRSF002746 1 449 8.6E-147 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 APJL_1696 e51c25e784d2476d057877041c297110 449 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 2 448 2.1E-112 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 APJL_1696 e51c25e784d2476d057877041c297110 449 Pfam PF02447 GntP family permease 1 446 5.3E-123 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 ProSitePatterns PS00632 Ribosomal protein S4 signature. 96 120 - T 11-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 SMART SM01390 3 97 3.8E-47 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 208 36.482 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 97 1.2E-31 T 11-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 SUPERFAMILY SSF55174 3 208 2.62E-71 T 11-10-2018 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 Pfam PF01479 S4 domain 99 145 2.7E-18 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 208 3.3E-86 T 11-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 Gene3D G3DSA:1.10.1050.10 6 208 2.7E-80 T 11-10-2018 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 SMART SM00363 98 162 1.3E-18 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1819 8eaeb57bebc2eea568b51d7228b6ea7a 208 Gene3D G3DSA:3.10.290.10 97 193 2.7E-80 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APJL_1518 59fc82cc8dcbcefe7742e7f7039453d5 229 SUPERFAMILY SSF51182 1 228 1.88E-72 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APJL_1518 59fc82cc8dcbcefe7742e7f7039453d5 229 Gene3D G3DSA:2.60.120.10 11 135 3.9E-86 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APJL_1518 59fc82cc8dcbcefe7742e7f7039453d5 229 PIRSF PIRSF006232 1 227 1.6E-52 T 11-10-2018 IPR012093 Pirin Reactome: R-HSA-8935690 APJL_1518 59fc82cc8dcbcefe7742e7f7039453d5 229 Gene3D G3DSA:2.60.120.10 7 228 3.9E-86 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APJL_1518 59fc82cc8dcbcefe7742e7f7039453d5 229 Pfam PF02678 Pirin 8 119 1.4E-35 T 11-10-2018 IPR003829 Pirin, N-terminal domain Reactome: R-HSA-8935690 APJL_0653 2ce6fdf68a88cac0ec040c6af7f31563 428 SUPERFAMILY SSF55920 168 426 2.22E-78 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APJL_0653 2ce6fdf68a88cac0ec040c6af7f31563 428 SMART SM01011 9 143 1.4E-55 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 APJL_0653 2ce6fdf68a88cac0ec040c6af7f31563 428 Gene3D G3DSA:3.40.350.10 10 164 3.0E-43 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APJL_0653 2ce6fdf68a88cac0ec040c6af7f31563 428 Pfam PF00557 Metallopeptidase family M24 174 404 7.2E-57 T 11-10-2018 IPR000994 Peptidase M24 APJL_0653 2ce6fdf68a88cac0ec040c6af7f31563 428 Gene3D G3DSA:3.90.230.10 165 428 3.8E-94 T 11-10-2018 APJL_0653 2ce6fdf68a88cac0ec040c6af7f31563 428 SUPERFAMILY SSF53092 9 167 1.1E-44 T 11-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal APJL_0653 2ce6fdf68a88cac0ec040c6af7f31563 428 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 341 353 - T 11-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site APJL_0653 2ce6fdf68a88cac0ec040c6af7f31563 428 Pfam PF05195 Aminopeptidase P, N-terminal domain 14 127 1.4E-33 T 11-10-2018 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 APJL_1247 8437f51e2f771ff607b4b535b7c7fd0c 430 SUPERFAMILY SSF56935 24 430 7.06E-133 T 11-10-2018 APJL_1247 8437f51e2f771ff607b4b535b7c7fd0c 430 Pfam PF02264 LamB porin 26 430 2.6E-136 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 APJL_1247 8437f51e2f771ff607b4b535b7c7fd0c 430 ProDom PD008788 PORIN MEMBRANE PRECURSOR SIGNAL MALTOPORIN OUTER ION TRANSMEMBRANE RECEPTOR LAMB 30 425 2.0E-161 T 11-10-2018 IPR003192 Porin, LamB-type GO:0015288|GO:0016020|GO:0034219 APJL_1247 8437f51e2f771ff607b4b535b7c7fd0c 430 Gene3D G3DSA:2.40.170.10 24 430 1.8E-149 T 11-10-2018 IPR036998 Porin, LamB-type superfamily GO:0015288|GO:0016020|GO:0034219 APJL_2071 d874a606557d9d45a0c746c4a160e807 350 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 207 216 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 APJL_2071 d874a606557d9d45a0c746c4a160e807 350 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 6 350 54.326 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APJL_2071 d874a606557d9d45a0c746c4a160e807 350 Pfam PF00155 Aminotransferase class I and II 44 347 9.2E-59 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APJL_2071 d874a606557d9d45a0c746c4a160e807 350 SUPERFAMILY SSF53383 6 349 7.8E-83 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_2071 d874a606557d9d45a0c746c4a160e807 350 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 349 1.4E-123 T 11-10-2018 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 APJL_2071 d874a606557d9d45a0c746c4a160e807 350 Gene3D G3DSA:3.40.640.10 51 254 3.5E-129 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_2071 d874a606557d9d45a0c746c4a160e807 350 Gene3D G3DSA:3.90.1150.10 6 342 3.5E-129 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_1182 cb43ffd02423e837ec3d498877cee682 298 SUPERFAMILY SSF54909 1 295 4.47E-85 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APJL_1182 cb43ffd02423e837ec3d498877cee682 298 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 294 2.1E-79 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 APJL_1182 cb43ffd02423e837ec3d498877cee682 298 Pfam PF04261 Dyp-type peroxidase family 5 294 2.9E-83 T 11-10-2018 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 11-10-2018 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 Pfam PF00311 Phosphoenolpyruvate carboxylase 129 879 1.9E-292 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 536 548 - T 11-10-2018 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 Gene3D G3DSA:1.20.1440.90 273 388 3.6E-25 T 11-10-2018 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 SUPERFAMILY SSF51621 7 879 0.0 T 11-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 186 202 6.9E-67 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 534 554 6.9E-67 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 708 734 6.9E-67 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 6.9E-67 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 245 260 6.9E-67 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 385 405 6.9E-67 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 576 605 6.9E-67 T 11-10-2018 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_0355 c40fc5741b58a99664e64dad891ffa82 879 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 879 17.94 T 11-10-2018 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 Gene3D G3DSA:2.30.30.790 2 115 5.0E-18 T 11-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 PRINTS PR00061 Ribosomal protein L19 signature 4 33 9.8E-43 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 PRINTS PR00061 Ribosomal protein L19 signature 88 113 9.8E-43 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 PRINTS PR00061 Ribosomal protein L19 signature 34 63 9.8E-43 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 3.3E-52 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 11-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 30.144 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 Pfam PF01245 Ribosomal protein L19 3 113 1.6E-48 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 SUPERFAMILY SSF50104 2 114 1.6E-46 T 11-10-2018 IPR008991 Translation protein SH3-like domain superfamily APJL_1825 d71981ac1b7ec2043f4b4a3113139ea1 116 PIRSF PIRSF002191 1 116 2.3E-49 T 11-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1786 c889c8a325d80da89eb932f9a45674c4 197 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 32 187 6.4E-16 T 11-10-2018 IPR013830 SGNH hydrolase-type esterase domain APJL_1786 c889c8a325d80da89eb932f9a45674c4 197 SUPERFAMILY SSF52266 12 196 5.5E-34 T 11-10-2018 APJL_1786 c889c8a325d80da89eb932f9a45674c4 197 Gene3D G3DSA:3.40.50.1110 3 197 2.7E-27 T 11-10-2018 IPR036514 SGNH hydrolase superfamily APJL_1725 fbc96f0e7616d4ef75f3c3b5ca9ca777 243 Pfam PF00005 ABC transporter 21 167 2.3E-33 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1725 fbc96f0e7616d4ef75f3c3b5ca9ca777 243 SUPERFAMILY SSF52540 3 237 8.1E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1725 fbc96f0e7616d4ef75f3c3b5ca9ca777 243 SMART SM00382 28 215 2.2E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1725 fbc96f0e7616d4ef75f3c3b5ca9ca777 243 PIRSF PIRSF039085 1 242 1.0E-96 T 11-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 APJL_1725 fbc96f0e7616d4ef75f3c3b5ca9ca777 243 Gene3D G3DSA:3.40.50.300 2 242 4.8E-74 T 11-10-2018 APJL_1725 fbc96f0e7616d4ef75f3c3b5ca9ca777 243 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1721 a8dfb3af9c9bfccfd1342c1502301747 383 Gene3D G3DSA:1.20.1090.10 187 383 1.7E-68 T 11-10-2018 APJL_1721 a8dfb3af9c9bfccfd1342c1502301747 383 TIGRFAM TIGR02638 lactal_redase: lactaldehyde reductase 2 379 6.2E-203 T 11-10-2018 IPR013460 Lactaldehyde reductase KEGG: 00630+1.1.1.77|KEGG: 00640+1.1.1.77 APJL_1721 a8dfb3af9c9bfccfd1342c1502301747 383 SUPERFAMILY SSF56796 10 381 2.62E-122 T 11-10-2018 APJL_1721 a8dfb3af9c9bfccfd1342c1502301747 383 Gene3D G3DSA:3.40.50.1970 1 185 6.4E-57 T 11-10-2018 APJL_1721 a8dfb3af9c9bfccfd1342c1502301747 383 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 259 279 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APJL_1721 a8dfb3af9c9bfccfd1342c1502301747 383 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 11-10-2018 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 APJL_1721 a8dfb3af9c9bfccfd1342c1502301747 383 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 375 6.7E-120 T 11-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 APJL_0365 ccffc4826be546f8d5d090367e5d0d79 469 Gene3D G3DSA:3.40.50.2000 241 450 4.9E-173 T 11-10-2018 APJL_0365 ccffc4826be546f8d5d090367e5d0d79 469 Pfam PF08323 Starch synthase catalytic domain 1 225 3.3E-66 T 11-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APJL_0365 ccffc4826be546f8d5d090367e5d0d79 469 SUPERFAMILY SSF53756 3 468 2.83E-113 T 11-10-2018 APJL_0365 ccffc4826be546f8d5d090367e5d0d79 469 Hamap MF_00484 Glycogen synthase [glgA]. 1 468 41.652 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APJL_0365 ccffc4826be546f8d5d090367e5d0d79 469 Gene3D G3DSA:3.40.50.2000 1 465 4.9E-173 T 11-10-2018 APJL_0365 ccffc4826be546f8d5d090367e5d0d79 469 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 468 5.7E-157 T 11-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 APJL_0365 ccffc4826be546f8d5d090367e5d0d79 469 Pfam PF00534 Glycosyl transferases group 1 274 438 2.1E-14 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APJL_1289 9fb6249401bcf10ce029027c3de1b9f2 55 SUPERFAMILY SSF158997 1 54 9.16E-17 T 11-10-2018 APJL_1289 9fb6249401bcf10ce029027c3de1b9f2 55 Pfam PF03966 Trm112p-like protein 3 41 8.8E-6 T 11-10-2018 IPR005651 Trm112-like APJL_1289 9fb6249401bcf10ce029027c3de1b9f2 55 Gene3D G3DSA:2.20.25.10 8 55 2.7E-17 T 11-10-2018 APJL_0899 b6b7581a4fa79b53ff2b77611b729904 434 Pfam PF02803 Thiolase, C-terminal domain 294 432 9.3E-21 T 11-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 APJL_0899 b6b7581a4fa79b53ff2b77611b729904 434 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 16 432 7.7E-90 T 11-10-2018 IPR002155 Thiolase GO:0016747 APJL_0899 b6b7581a4fa79b53ff2b77611b729904 434 PIRSF PIRSF000429 8 434 1.7E-85 T 11-10-2018 IPR002155 Thiolase GO:0016747 APJL_0899 b6b7581a4fa79b53ff2b77611b729904 434 Gene3D G3DSA:3.40.47.10 5 433 4.8E-85 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_0899 b6b7581a4fa79b53ff2b77611b729904 434 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 93 111 - T 11-10-2018 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0016747 APJL_0899 b6b7581a4fa79b53ff2b77611b729904 434 Pfam PF00108 Thiolase, N-terminal domain 14 286 1.7E-47 T 11-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 APJL_0899 b6b7581a4fa79b53ff2b77611b729904 434 SUPERFAMILY SSF53901 11 432 5.6E-44 T 11-10-2018 IPR016039 Thiolase-like GO:0003824 APJL_2066 be6e06250c5ce84aa23f377ae4385a7a 695 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 146 6.2E-9 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APJL_2066 be6e06250c5ce84aa23f377ae4385a7a 695 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 53 695 1.2E-71 T 11-10-2018 IPR010105 TonB-dependent siderophore receptor GO:0005506|GO:0015891|GO:0038023 APJL_2066 be6e06250c5ce84aa23f377ae4385a7a 695 Pfam PF00593 TonB dependent receptor 239 694 4.1E-41 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APJL_2066 be6e06250c5ce84aa23f377ae4385a7a 695 Gene3D G3DSA:2.40.170.20 160 695 4.6E-99 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APJL_2066 be6e06250c5ce84aa23f377ae4385a7a 695 Gene3D G3DSA:2.170.130.10 27 154 4.5E-18 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APJL_2066 be6e06250c5ce84aa23f377ae4385a7a 695 SUPERFAMILY SSF56935 20 695 3.66E-105 T 11-10-2018 APJL_2066 be6e06250c5ce84aa23f377ae4385a7a 695 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 678 695 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APJL_1856 49974b79cb126a5024734860382a2b3d 224 PIRSF PIRSF001461 2 224 1.4E-101 T 11-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APJL_1856 49974b79cb126a5024734860382a2b3d 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 35 49 - T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APJL_1856 49974b79cb126a5024734860382a2b3d 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 8 205 1.6E-88 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APJL_1856 49974b79cb126a5024734860382a2b3d 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 7 218 4.1E-95 T 11-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 APJL_1856 49974b79cb126a5024734860382a2b3d 224 Gene3D G3DSA:3.20.20.70 7 224 8.7E-83 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1856 49974b79cb126a5024734860382a2b3d 224 SUPERFAMILY SSF51366 6 219 2.27E-74 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 Gene3D G3DSA:1.10.1380.10 64 457 1.1E-207 T 11-10-2018 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 Pfam PF01431 Peptidase family M13 470 672 7.1E-67 T 11-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 Pfam PF05649 Peptidase family M13 38 414 3.2E-86 T 11-10-2018 IPR008753 Peptidase M13, N-terminal domain GO:0006508 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 SUPERFAMILY SSF55486 25 675 2.93E-194 T 11-10-2018 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 572 583 3.3E-21 T 11-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 480 492 3.3E-21 T 11-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 501 517 3.3E-21 T 11-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 462 474 3.3E-21 T 11-10-2018 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 APJL_1960 3c462e866613a1a0d1dcd894ee60276b 675 Gene3D G3DSA:3.40.390.10 33 675 1.1E-207 T 11-10-2018 IPR024079 Metallopeptidase, catalytic domain superfamily GO:0008237 APJL_0073 ee8cde4f0478d3c78ca95fa5885079dd 110 SUPERFAMILY SSF52833 4 106 2.99E-34 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0073 ee8cde4f0478d3c78ca95fa5885079dd 110 PIRSF PIRSF005894 1 110 3.1E-51 T 11-10-2018 IPR014434 Monothiol glutaredoxin GO:0015036 Reactome: R-HSA-1362409 APJL_0073 ee8cde4f0478d3c78ca95fa5885079dd 110 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 7 103 4.3E-45 T 11-10-2018 IPR004480 Monothiol glutaredoxin-related APJL_0073 ee8cde4f0478d3c78ca95fa5885079dd 110 Pfam PF00462 Glutaredoxin 19 83 2.6E-16 T 11-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 APJL_0073 ee8cde4f0478d3c78ca95fa5885079dd 110 Gene3D G3DSA:3.40.30.10 4 110 6.8E-30 T 11-10-2018 APJL_2051 b269a7dcf00702d94be9950f2ebd36b2 489 SUPERFAMILY SSF48452 120 178 5.48E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_2051 b269a7dcf00702d94be9950f2ebd36b2 489 Pfam PF04575 Protein of unknown function (DUF560) 201 489 3.7E-111 T 11-10-2018 IPR007655 Protein of unknown function DUF560 APJL_2051 b269a7dcf00702d94be9950f2ebd36b2 489 Pfam PF14559 Tetratricopeptide repeat 129 181 2.3E-6 T 11-10-2018 APJL_2051 b269a7dcf00702d94be9950f2ebd36b2 489 Gene3D G3DSA:1.25.40.10 118 238 3.7E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1396 eddb8e580ab6ca9da37854a43171377e 107 Gene3D G3DSA:2.20.25.10 1 41 9.4E-17 T 11-10-2018 APJL_1396 eddb8e580ab6ca9da37854a43171377e 107 Gene3D G3DSA:2.30.30.40 42 107 7.0E-27 T 11-10-2018 APJL_1396 eddb8e580ab6ca9da37854a43171377e 107 Pfam PF03831 PhnA domain 45 107 4.3E-25 T 11-10-2018 IPR013988 PhnA protein, C-terminal APJL_1396 eddb8e580ab6ca9da37854a43171377e 107 SUPERFAMILY SSF57783 1 37 1.36E-13 T 11-10-2018 APJL_1396 eddb8e580ab6ca9da37854a43171377e 107 SUPERFAMILY SSF82057 39 107 4.44E-23 T 11-10-2018 APJL_1396 eddb8e580ab6ca9da37854a43171377e 107 Pfam PF08274 PhnA Zinc-Ribbon 3 30 3.0E-13 T 11-10-2018 IPR013987 PhnA protein, N-terminal APJL_1396 eddb8e580ab6ca9da37854a43171377e 107 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 4 107 1.5E-54 T 11-10-2018 IPR004624 PhnA protein APJL_0496 8e96b4e90deaabed5a35b43aea1f510d 396 Gene3D G3DSA:3.40.50.1100 11 206 1.0E-180 T 11-10-2018 APJL_0496 8e96b4e90deaabed5a35b43aea1f510d 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 53 379 2.7E-48 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APJL_0496 8e96b4e90deaabed5a35b43aea1f510d 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 392 48.7 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APJL_0496 8e96b4e90deaabed5a35b43aea1f510d 396 SUPERFAMILY SSF53686 7 391 5.5E-142 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APJL_0496 8e96b4e90deaabed5a35b43aea1f510d 396 PIRSF PIRSF001413 2 395 4.5E-165 T 11-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APJL_0496 8e96b4e90deaabed5a35b43aea1f510d 396 Gene3D G3DSA:3.40.50.1100 55 385 1.0E-180 T 11-10-2018 APJL_0496 8e96b4e90deaabed5a35b43aea1f510d 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 81 95 - T 11-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APJL_0496 8e96b4e90deaabed5a35b43aea1f510d 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 9 390 3.3E-188 T 11-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APJL_0458 6c405f359dff620f9a018c1232004c72 360 Gene3D G3DSA:3.40.718.10 1 360 3.4E-157 T 11-10-2018 APJL_0458 6c405f359dff620f9a018c1232004c72 360 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 354 1.3E-138 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APJL_0458 6c405f359dff620f9a018c1232004c72 360 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 5 353 1.5E-173 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 APJL_0458 6c405f359dff620f9a018c1232004c72 360 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 4 358 51.202 T 11-10-2018 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 APJL_0458 6c405f359dff620f9a018c1232004c72 360 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 246 265 - T 11-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 APJL_0458 6c405f359dff620f9a018c1232004c72 360 SUPERFAMILY SSF53659 2 358 2.52E-124 T 11-10-2018 APJL_0458 6c405f359dff620f9a018c1232004c72 360 SMART SM01329 5 354 1.1E-203 T 11-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 ProSitePatterns PS01071 grpE protein signature. 153 196 - T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 SUPERFAMILY SSF51064 143 197 1.05E-17 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 Gene3D G3DSA:2.30.22.10 142 197 3.1E-22 T 11-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 Hamap MF_01151 Protein GrpE [grpE]. 4 198 21.216 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 PRINTS PR00773 GrpE protein signature 150 165 3.7E-27 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 PRINTS PR00773 GrpE protein signature 93 108 3.7E-27 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 PRINTS PR00773 GrpE protein signature 65 81 3.7E-27 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 PRINTS PR00773 GrpE protein signature 177 196 3.7E-27 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 Pfam PF01025 GrpE 29 197 2.3E-47 T 11-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 SUPERFAMILY SSF58014 57 142 1.44E-22 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 APJL_0385 c965b03504009f5f343cce5cf5da68b8 198 Gene3D G3DSA:3.90.20.20 2 141 1.8E-27 T 11-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 APJL_0130 24b5882b5d6ff18ba2d32bdf713775f6 197 Hamap MF_00052_B Ribonuclease HII [rnhB]. 12 191 39.508 T 11-10-2018 IPR022898 Ribonuclease HII GO:0004523 APJL_0130 24b5882b5d6ff18ba2d32bdf713775f6 197 Gene3D G3DSA:3.30.420.10 2 196 1.4E-76 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0130 24b5882b5d6ff18ba2d32bdf713775f6 197 SUPERFAMILY SSF53098 4 196 1.27E-71 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0130 24b5882b5d6ff18ba2d32bdf713775f6 197 Pfam PF01351 Ribonuclease HII 14 190 1.2E-40 T 11-10-2018 IPR024567 Ribonuclease HII/HIII domain APJL_1616 f1d69f274f1db327d4fd00c44043ef8a 385 TIGRFAM TIGR01010 BexC_CtrB_KpsE: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family 25 385 1.4E-175 T 11-10-2018 IPR005705 Polysaccharide export inner-membrane protein, BexC/CtrB/KpsE/VexD GO:0005351|GO:0009276|GO:0015774 APJL_1133 708e453bb8fa0f6a152aa1b43b0ab2d3 226 Gene3D G3DSA:3.90.79.10 64 226 7.5E-36 T 11-10-2018 APJL_1133 708e453bb8fa0f6a152aa1b43b0ab2d3 226 SUPERFAMILY SSF55811 68 224 1.12E-28 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_1133 708e453bb8fa0f6a152aa1b43b0ab2d3 226 Pfam PF00293 NUDIX domain 99 201 3.5E-9 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APJL_1133 708e453bb8fa0f6a152aa1b43b0ab2d3 226 Pfam PF12535 Hydrolase of X-linked nucleoside diphosphate N terminal 26 80 1.3E-26 T 11-10-2018 APJL_1835 cf5074786f5019bad81419293be9d22e 206 SUPERFAMILY SSF46626 132 199 7.4E-5 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APJL_0819 5ac0222020bda3ee7bdf328f8120a2b4 615 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 92 98 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_0819 5ac0222020bda3ee7bdf328f8120a2b4 615 Pfam PF01555 DNA methylase 89 418 1.9E-36 T 11-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 APJL_0819 5ac0222020bda3ee7bdf328f8120a2b4 615 PIRSF PIRSF015855 2 615 2.5E-159 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0819 5ac0222020bda3ee7bdf328f8120a2b4 615 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 376 398 7.7E-15 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0819 5ac0222020bda3ee7bdf328f8120a2b4 615 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 399 413 7.7E-15 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0819 5ac0222020bda3ee7bdf328f8120a2b4 615 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 89 101 7.7E-15 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0819 5ac0222020bda3ee7bdf328f8120a2b4 615 PRINTS PR00506 D21 class N6 adenine-specific DNA methyltransferase signature 155 174 7.7E-15 T 11-10-2018 IPR002295 N6 adenine-specific DNA methyltransferase, D21 class GO:0003677|GO:0006306|GO:0008170 APJL_0819 5ac0222020bda3ee7bdf328f8120a2b4 615 SUPERFAMILY SSF53335 56 417 1.27E-57 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1776 b623a5c75cca9e2db4ba280f80e63ad2 91 PIRSF PIRSF029827 1 90 1.2E-43 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 APJL_1776 b623a5c75cca9e2db4ba280f80e63ad2 91 SUPERFAMILY SSF111148 1 89 3.27E-39 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 APJL_1776 b623a5c75cca9e2db4ba280f80e63ad2 91 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.782 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 APJL_1776 b623a5c75cca9e2db4ba280f80e63ad2 91 Pfam PF04362 Bacterial Fe(2+) trafficking 1 87 1.6E-41 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 APJL_1776 b623a5c75cca9e2db4ba280f80e63ad2 91 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 9.0E-37 T 11-10-2018 IPR007457 Fe(II) trafficking protein YggX GO:0005506 APJL_1776 b623a5c75cca9e2db4ba280f80e63ad2 91 Gene3D G3DSA:1.10.3880.10 1 91 9.3E-38 T 11-10-2018 IPR036766 Fe(II) trafficking protein YggX superfamily GO:0005506 APJL_0525 d60d25e844d065eb56ad582b77819f95 73 Pfam PF05690 Thiazole biosynthesis protein ThiG 6 67 2.5E-14 T 11-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 APJL_0525 d60d25e844d065eb56ad582b77819f95 73 SUPERFAMILY SSF110399 3 63 1.31E-14 T 11-10-2018 APJL_0525 d60d25e844d065eb56ad582b77819f95 73 Gene3D G3DSA:3.20.20.70 1 69 2.6E-15 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0667 c4ddb6d147e0bb9bc6061b87870df19d 196 Gene3D G3DSA:3.40.470.10 5 194 1.1E-17 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_0667 c4ddb6d147e0bb9bc6061b87870df19d 196 SUPERFAMILY SSF52141 9 190 4.05E-24 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_1275 110d164b0db343b7b14839f3e2d2905c 66 Gene3D G3DSA:3.30.70.100 3 66 1.1E-21 T 11-10-2018 APJL_1275 110d164b0db343b7b14839f3e2d2905c 66 ProSitePatterns PS01047 Heavy-metal-associated domain. 7 36 - T 11-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 APJL_1275 110d164b0db343b7b14839f3e2d2905c 66 Pfam PF00403 Heavy-metal-associated domain 4 62 8.3E-16 T 11-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 APJL_1275 110d164b0db343b7b14839f3e2d2905c 66 SUPERFAMILY SSF55008 2 65 8.64E-19 T 11-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 APJL_1879 0aa96894769f4cc9783f9e1da03e8684 164 Pfam PF04345 Chorismate lyase 21 159 7.9E-27 T 11-10-2018 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|MetaCyc: PWY-7742|MetaCyc: PWY-7745|MetaCyc: PWY-7929|MetaCyc: PWY-7934|MetaCyc: PWY-7935 APJL_1879 0aa96894769f4cc9783f9e1da03e8684 164 Gene3D G3DSA:3.40.1410.10 6 164 7.3E-38 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APJL_1879 0aa96894769f4cc9783f9e1da03e8684 164 SUPERFAMILY SSF64288 6 162 1.02E-38 T 11-10-2018 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily APJL_1613 e64d8eeaa93497e6e08c8d1b7158e39c 142 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 4 68 7.3E-20 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APJL_1613 e64d8eeaa93497e6e08c8d1b7158e39c 142 SUPERFAMILY SSF52374 1 126 1.51E-33 T 11-10-2018 APJL_1613 e64d8eeaa93497e6e08c8d1b7158e39c 142 TIGRFAM TIGR01518 g3p_cytidyltrns: glycerol-3-phosphate cytidylyltransferase 4 125 3.4E-56 T 11-10-2018 IPR006409 Glycerol-3-phosphate cytidylyltransferase GO:0005737|GO:0019350|GO:0046872|GO:0047348 KEGG: 00564+2.7.7.39|MetaCyc: PWY-7815|MetaCyc: PWY-7816|MetaCyc: PWY-7819 APJL_1613 e64d8eeaa93497e6e08c8d1b7158e39c 142 Pfam PF01467 Cytidylyltransferase-like 5 101 8.0E-21 T 11-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 APJL_1613 e64d8eeaa93497e6e08c8d1b7158e39c 142 Gene3D G3DSA:3.40.50.620 1 127 1.2E-39 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0145 fb31801787b93217c02631b51f22d4c5 519 SUPERFAMILY SSF52540 1 301 1.14E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0145 fb31801787b93217c02631b51f22d4c5 519 Pfam PF11398 Protein of unknown function (DUF2813) 1 344 4.2E-133 T 11-10-2018 IPR022602 Protein of unknown function DUF2813 APJL_0145 fb31801787b93217c02631b51f22d4c5 519 Gene3D G3DSA:3.40.50.300 1 312 4.1E-16 T 11-10-2018 APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 Gene3D G3DSA:1.20.200.10 118 446 2.2E-158 T 11-10-2018 APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 Pfam PF00206 Lyase 14 312 1.4E-73 T 11-10-2018 IPR022761 Fumarate lyase, N-terminal APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 PRINTS PR00149 Fumarate lyase superfamily signature 251 278 4.3E-17 T 11-10-2018 IPR000362 Fumarate lyase family APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 PRINTS PR00149 Fumarate lyase superfamily signature 294 310 4.3E-17 T 11-10-2018 IPR000362 Fumarate lyase family APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 4.3E-17 T 11-10-2018 IPR000362 Fumarate lyase family APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 4.3E-17 T 11-10-2018 IPR000362 Fumarate lyase family APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 ProSitePatterns PS00163 Fumarate lyases signature. 294 303 - T 11-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 Gene3D G3DSA:1.10.40.30 382 445 2.2E-158 T 11-10-2018 APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 2.8E-150 T 11-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 Pfam PF08328 Adenylosuccinate lyase C-terminal 331 445 1.3E-52 T 11-10-2018 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 Gene3D G3DSA:1.10.275.10 1 117 2.3E-51 T 11-10-2018 IPR024083 Fumarase/histidase, N-terminal APJL_0831 a8ef7a537800e44bd046ef8e419020dd 455 SUPERFAMILY SSF48557 10 454 1.73E-107 T 11-10-2018 IPR008948 L-Aspartase-like GO:0003824 APJL_0354 e4bf254960364e78128425fe8a52b8f9 198 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 3 187 23.933 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 APJL_0354 e4bf254960364e78128425fe8a52b8f9 198 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 10 185 5.1E-49 T 11-10-2018 IPR010664 Lipopolysaccharide assembly, LptC-related APJL_0354 e4bf254960364e78128425fe8a52b8f9 198 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 4 183 2.4E-50 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 APJL_0354 e4bf254960364e78128425fe8a52b8f9 198 Gene3D G3DSA:2.60.450.10 60 192 2.7E-34 T 11-10-2018 APJL_0354 e4bf254960364e78128425fe8a52b8f9 198 PIRSF PIRSF028513 1 187 2.0E-30 T 11-10-2018 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 SUPERFAMILY SSF48163 310 473 6.54E-45 T 11-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 21 32 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 14 476 3.0E-201 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 Gene3D G3DSA:3.40.50.620 13 325 2.8E-137 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 PRINTS PR00987 Glutamyl-tRNA synthetase signature 206 214 1.5E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 PRINTS PR00987 Glutamyl-tRNA synthetase signature 18 30 1.5E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 PRINTS PR00987 Glutamyl-tRNA synthetase signature 190 200 1.5E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 PRINTS PR00987 Glutamyl-tRNA synthetase signature 32 43 1.5E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 PRINTS PR00987 Glutamyl-tRNA synthetase signature 47 60 1.5E-27 T 11-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 14 472 32.343 T 11-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 Gene3D G3DSA:1.10.10.350 378 478 4.8E-25 T 11-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 14 316 4.7E-123 T 11-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 APJL_1286 8ae67df8b74ca5e75266662c16b6672f 479 SUPERFAMILY SSF52374 14 309 8.31E-113 T 11-10-2018 APJL_1199 f0fbe11bb37f6c4ab7def770d33cd8d4 322 SUPERFAMILY SSF47413 13 53 9.85E-7 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_1199 f0fbe11bb37f6c4ab7def770d33cd8d4 322 Gene3D G3DSA:1.10.260.40 6 111 8.9E-19 T 11-10-2018 APJL_1199 f0fbe11bb37f6c4ab7def770d33cd8d4 322 Pfam PF13464 Domain of unknown function (DUF4115) 252 318 1.8E-10 T 11-10-2018 IPR025194 Domain of unknown function DUF4115 APJL_1199 f0fbe11bb37f6c4ab7def770d33cd8d4 322 Pfam PF13413 Helix-turn-helix domain 20 78 9.6E-17 T 11-10-2018 APJL_1877 dee275392b7467c820d5e30bb17fa989 153 SUPERFAMILY SSF54909 68 151 2.41E-18 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APJL_1877 dee275392b7467c820d5e30bb17fa989 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 23 34 8.4E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APJL_1877 dee275392b7467c820d5e30bb17fa989 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 34 53 8.4E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APJL_1877 dee275392b7467c820d5e30bb17fa989 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 7 23 8.4E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APJL_1877 dee275392b7467c820d5e30bb17fa989 153 Pfam PF01037 Lrp/AsnC ligand binding domain 77 144 4.0E-17 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APJL_1877 dee275392b7467c820d5e30bb17fa989 153 Gene3D G3DSA:1.10.10.10 3 58 5.1E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1877 dee275392b7467c820d5e30bb17fa989 153 SMART SM00344 7 114 4.2E-47 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APJL_1877 dee275392b7467c820d5e30bb17fa989 153 Gene3D G3DSA:3.30.70.920 59 141 1.3E-31 T 11-10-2018 APJL_1877 dee275392b7467c820d5e30bb17fa989 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 25 51 - T 11-10-2018 IPR019885 Transcription regulator HTH, AsnC-type, conserved site APJL_1877 dee275392b7467c820d5e30bb17fa989 153 SUPERFAMILY SSF46785 5 67 9.24E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1877 dee275392b7467c820d5e30bb17fa989 153 Pfam PF13404 AsnC-type helix-turn-helix domain 7 48 4.7E-13 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Gene3D G3DSA:3.30.70.1440 651 844 1.9E-273 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Gene3D G3DSA:3.30.2090.10 701 789 1.9E-273 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Gene3D G3DSA:1.20.1640.10 504 1008 1.9E-273 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Gene3D G3DSA:3.30.2090.10 178 269 1.9E-273 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 SUPERFAMILY SSF82693 556 651 8.37E-17 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 SUPERFAMILY SSF82866 787 1013 2.22E-43 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 606 620 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 PRINTS PR00702 Acriflavin resistance protein family signature 543 560 6.1E-73 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Pfam PF00873 AcrB/AcrD/AcrF family 4 1011 1.3E-249 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Gene3D G3DSA:3.30.70.1320 134 326 1.9E-273 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Gene3D G3DSA:3.30.70.1430 558 650 1.9E-273 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 SUPERFAMILY SSF82693 138 324 6.54E-18 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 SUPERFAMILY SSF82866 293 489 1.44E-43 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 SUPERFAMILY SSF82693 41 133 2.35E-20 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 SUPERFAMILY SSF82714 184 265 8.37E-14 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Gene3D G3DSA:3.30.70.1430 40 797 1.9E-273 T 11-10-2018 APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 SUPERFAMILY SSF82714 708 788 5.62E-16 T 11-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains APJL_0580 5070efe87c7af8bdc6a69d6e1c2df783 1039 Gene3D G3DSA:1.20.1640.10 10 503 1.9E-273 T 11-10-2018 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 PIRSF PIRSF000197 1 1200 0.0 T 11-10-2018 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 517 1010 4.8E-220 T 11-10-2018 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 SUPERFAMILY SSF53720 558 1010 2.36E-122 T 11-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 Gene3D G3DSA:3.40.605.10 540 1009 9.7E-145 T 11-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 812 823 - T 11-10-2018 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0016491|GO:0055114 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 Gene3D G3DSA:3.20.20.220 140 516 4.6E-141 T 11-10-2018 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 Pfam PF00171 Aldehyde dehydrogenase family 567 1007 1.3E-117 T 11-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 68 178 1.4E-46 T 11-10-2018 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 Pfam PF01619 Proline dehydrogenase 189 481 1.7E-96 T 11-10-2018 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|Reactome: R-HSA-70688 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 SUPERFAMILY SSF81935 15 180 2.62E-61 T 11-10-2018 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 SUPERFAMILY SSF51730 181 523 1.8E-115 T 11-10-2018 IPR029041 FAD-linked oxidoreductase-like APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 Gene3D G3DSA:3.40.309.10 787 980 9.7E-145 T 11-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 APJL_0107 2d3655a761c5e79d29d2749203edc313 1201 Gene3D G3DSA:3.20.20.220 12 104 1.1E-7 T 11-10-2018 APJL_1972 cff4b238a054d58cc8f49b7e097fcb0a 256 Pfam PF00121 Triosephosphate isomerase 6 248 7.7E-90 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1972 cff4b238a054d58cc8f49b7e097fcb0a 256 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 11-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1972 cff4b238a054d58cc8f49b7e097fcb0a 256 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 6 241 9.8E-87 T 11-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1972 cff4b238a054d58cc8f49b7e097fcb0a 256 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 3 250 61.165 T 11-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1972 cff4b238a054d58cc8f49b7e097fcb0a 256 SUPERFAMILY SSF51351 3 251 1.14E-88 T 11-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1972 cff4b238a054d58cc8f49b7e097fcb0a 256 Gene3D G3DSA:3.20.20.70 2 256 3.8E-97 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1079 2bc4ce7ece5f90c11bc310d37d30312d 238 SUPERFAMILY SSF52172 16 195 4.02E-35 T 11-10-2018 IPR011006 CheY-like superfamily APJL_1079 2bc4ce7ece5f90c11bc310d37d30312d 238 Gene3D G3DSA:3.40.50.2300 4 138 5.7E-38 T 11-10-2018 APJL_1079 2bc4ce7ece5f90c11bc310d37d30312d 238 SMART SM00862 162 233 9.0E-25 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APJL_1079 2bc4ce7ece5f90c11bc310d37d30312d 238 Gene3D G3DSA:1.10.10.10 139 237 2.2E-29 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1079 2bc4ce7ece5f90c11bc310d37d30312d 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 233 1.1E-21 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APJL_1079 2bc4ce7ece5f90c11bc310d37d30312d 238 SMART SM00448 18 129 4.3E-34 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_1079 2bc4ce7ece5f90c11bc310d37d30312d 238 Pfam PF00072 Response regulator receiver domain 20 128 5.9E-22 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_2018 a6adfbbdd91ce5b71b0017857a2c1955 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 20.984 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_2018 a6adfbbdd91ce5b71b0017857a2c1955 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 1.3E-26 T 11-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_2018 a6adfbbdd91ce5b71b0017857a2c1955 78 Pfam PF00830 Ribosomal L28 family 3 62 9.4E-25 T 11-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2018 a6adfbbdd91ce5b71b0017857a2c1955 78 Gene3D G3DSA:2.30.170.40 2 78 5.1E-33 T 11-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2018 a6adfbbdd91ce5b71b0017857a2c1955 78 SUPERFAMILY SSF143800 2 77 1.12E-29 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0174 5e71eca070be98127ba3873383353d57 328 Pfam PF01979 Amidohydrolase family 21 327 1.6E-9 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APJL_0174 5e71eca070be98127ba3873383353d57 328 Gene3D G3DSA:3.20.20.140 22 327 7.1E-58 T 11-10-2018 APJL_0174 5e71eca070be98127ba3873383353d57 328 SUPERFAMILY SSF51556 21 327 4.54E-64 T 11-10-2018 IPR032466 Metal-dependent hydrolase APJL_0174 5e71eca070be98127ba3873383353d57 328 ProDom PD049525 CYTOSINE HI0843 HYDROLASE RELATED METAL-DEPENDENT DEAMINASE HYDROLASES PM1882 286 327 2.0E-18 T 11-10-2018 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 11-10-2018 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 6.2E-137 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 PIRSF PIRSF001415 2 336 1.6E-146 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 Gene3D G3DSA:3.20.20.70 2 337 5.5E-145 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 3.3E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 3.3E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 3.3E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 3.3E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 3.3E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 3.3E-56 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 SMART SM01004 9 333 5.3E-239 T 11-10-2018 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451|Reactome: R-HSA-6798695 APJL_2036 26c7c0a08622333dad160ab5eafb371e 339 SUPERFAMILY SSF51569 5 335 1.9E-141 T 11-10-2018 APJL_1597 320c52b612188f455850bbc9f1e65e37 931 Pfam PF07715 TonB-dependent Receptor Plug Domain 54 155 1.5E-15 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APJL_1597 320c52b612188f455850bbc9f1e65e37 931 TIGRFAM TIGR01776 TonB-tbp-lbp: TonB-dependent lactoferrin and transferrin receptors 2 931 0.0 T 11-10-2018 IPR010948 TonB-dependent lactoferrin/transferrin receptor GO:0015091|GO:0015682|GO:0019867 APJL_1597 320c52b612188f455850bbc9f1e65e37 931 Pfam PF00593 TonB dependent receptor 410 930 2.8E-36 T 11-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel APJL_1597 320c52b612188f455850bbc9f1e65e37 931 SUPERFAMILY SSF56935 31 931 9.46E-73 T 11-10-2018 APJL_1597 320c52b612188f455850bbc9f1e65e37 931 Gene3D G3DSA:2.40.170.20 172 263 5.8E-14 T 11-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily APJL_1597 320c52b612188f455850bbc9f1e65e37 931 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 914 931 - T 11-10-2018 IPR010917 TonB-dependent receptor, conserved site APJL_1597 320c52b612188f455850bbc9f1e65e37 931 Gene3D G3DSA:2.170.130.10 47 171 4.8E-24 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APJL_1597 320c52b612188f455850bbc9f1e65e37 931 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 31 931 1.4E-201 T 11-10-2018 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0019867|GO:0022857|GO:0055085 APJL_1161 1c0243c27cd7ca4227b4a6137398795b 106 SMART SM01022 8 106 1.6E-31 T 11-10-2018 IPR007374 ASCH domain APJL_1161 1c0243c27cd7ca4227b4a6137398795b 106 SUPERFAMILY SSF88697 5 105 4.31E-34 T 11-10-2018 IPR015947 PUA-like superfamily APJL_1161 1c0243c27cd7ca4227b4a6137398795b 106 Pfam PF04266 ASCH domain 9 106 1.4E-19 T 11-10-2018 IPR007374 ASCH domain APJL_1161 1c0243c27cd7ca4227b4a6137398795b 106 PIRSF PIRSF029143 3 106 6.1E-46 T 11-10-2018 IPR008314 Uncharacterised conserved protein UCP029143 APJL_1161 1c0243c27cd7ca4227b4a6137398795b 106 Gene3D G3DSA:2.30.130.30 3 105 2.2E-42 T 11-10-2018 APJL_0563 e8590eff5b83bcf8959382cf33bbf1a3 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 28.117 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 APJL_0563 e8590eff5b83bcf8959382cf33bbf1a3 185 Gene3D G3DSA:3.30.1360.40 31 105 7.9E-70 T 11-10-2018 APJL_0563 e8590eff5b83bcf8959382cf33bbf1a3 185 Gene3D G3DSA:1.10.132.20 12 182 7.9E-70 T 11-10-2018 APJL_0563 e8590eff5b83bcf8959382cf33bbf1a3 185 Pfam PF01765 Ribosome recycling factor 20 183 5.2E-65 T 11-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 APJL_0563 e8590eff5b83bcf8959382cf33bbf1a3 185 SUPERFAMILY SSF55194 2 183 4.32E-72 T 11-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 APJL_0563 e8590eff5b83bcf8959382cf33bbf1a3 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 184 8.8E-82 T 11-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 APJL_1409 62f287c54c7ca93f6551e2a5547f6708 30 Pfam PF16951 Putative methionine and alanine importer, small subunit 1 29 9.5E-10 T 11-10-2018 IPR031596 Putative methionine and alanine importer, small subunit APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 Gene3D G3DSA:3.40.50.2300 367 469 9.2E-35 T 11-10-2018 APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 380 455 2.0E-8 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 494 631 1.2E-31 T 11-10-2018 IPR002178 PTS EIIA type-2 domain APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 SUPERFAMILY SSF55804 494 632 3.4E-37 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 Pfam PF02378 Phosphotransferase system, EIIC 16 275 1.1E-17 T 11-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 Gene3D G3DSA:3.40.930.10 489 633 1.2E-45 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 7 345 2.7E-168 T 11-10-2018 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 KEGG: 00051+2.7.1.197 APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 SUPERFAMILY SSF52794 377 465 2.28E-22 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 APJL_1663 1b1bc85bf2d046e892e7cd95dd66358d 633 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 536 552 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain APJL_1745 f4a219c22ee2073f1f29a3e314f8cba3 668 Pfam PF03169 OPT oligopeptide transporter protein 9 619 1.2E-109 T 11-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 APJL_1745 f4a219c22ee2073f1f29a3e314f8cba3 668 TIGRFAM TIGR00733 TIGR00733: oligopeptide transporter, OPT family 9 621 5.0E-239 T 11-10-2018 IPR004814 Oligopeptide transporter OPT APJL_1745 f4a219c22ee2073f1f29a3e314f8cba3 668 TIGRFAM TIGR00728 OPT_sfam: oligopeptide transporter, OPT superfamily 5 621 1.6E-123 T 11-10-2018 IPR004813 Oligopeptide transporter, OPT superfamily GO:0055085 APJL_0829 eac8464a5c14a0194d52cd2c7c2b122f 293 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 9 292 29.015 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 APJL_0829 eac8464a5c14a0194d52cd2c7c2b122f 293 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 14 290 2.8E-104 T 11-10-2018 IPR006370 4-hydroxybenzoate polyprenyltransferase-like GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 APJL_0829 eac8464a5c14a0194d52cd2c7c2b122f 293 Gene3D G3DSA:1.10.357.140 25 188 8.4E-43 T 11-10-2018 APJL_0829 eac8464a5c14a0194d52cd2c7c2b122f 293 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 71 93 - T 11-10-2018 IPR030470 UbiA prenyltransferase conserved site APJL_0829 eac8464a5c14a0194d52cd2c7c2b122f 293 Pfam PF01040 UbiA prenyltransferase family 32 274 5.6E-65 T 11-10-2018 IPR000537 UbiA prenyltransferase family GO:0016021|GO:0016765 APJL_1147 8c54ed70662f77411a4e0c5b922ec39b 350 Pfam PF01594 AI-2E family transporter 12 329 1.6E-64 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 60 205 5.9E-34 T 11-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PIRSF PIRSF000310 6 368 2.5E-131 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 157 181 1.1E-70 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 68 92 1.1E-70 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 212 229 1.1E-70 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 254 280 1.1E-70 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 45 67 1.1E-70 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 114 137 1.1E-70 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 186 209 1.1E-70 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 PRINTS PR00614 Ni-Fe hydrogenase small subunit signature 230 248 1.1E-70 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 Gene3D G3DSA:4.10.480.10 225 316 6.8E-31 T 11-10-2018 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 14 32 2.5E-5 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 Pfam PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal 225 309 2.8E-26 T 11-10-2018 IPR027394 Cytochrome-c3 hydrogenase, C-terminal APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 SUPERFAMILY SSF56770 45 308 4.06E-87 T 11-10-2018 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 TIGRFAM TIGR00391 hydA: hydrogenase (NiFe) small subunit (hydA) 12 365 1.6E-162 T 11-10-2018 IPR001821 [NiFe]-hydrogenase, small subunit GO:0008901|GO:0009375|GO:0051536|GO:0055114 APJL_1349 ba38f40ea2e37eeb04008a40a040b60b 380 Gene3D G3DSA:3.40.50.700 44 223 8.4E-71 T 11-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily APJL_1006 8f2e198cc49a4dbe9e24760d525d5707 59 Pfam PF13518 Helix-turn-helix domain 8 53 8.1E-7 T 11-10-2018 APJL_1006 8f2e198cc49a4dbe9e24760d525d5707 59 SUPERFAMILY SSF46689 1 52 7.88E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1994 00718c2926abbdd61f6cad9022199db9 394 Pfam PF06965 Na+/H+ antiporter 1 7 382 5.4E-145 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 APJL_1994 00718c2926abbdd61f6cad9022199db9 394 Gene3D G3DSA:1.20.1530.10 2 390 4.0E-149 T 11-10-2018 IPR023171 Na/H antiporter domain superfamily APJL_1994 00718c2926abbdd61f6cad9022199db9 394 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 388 23.182 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 APJL_1994 00718c2926abbdd61f6cad9022199db9 394 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 382 5.2E-167 T 11-10-2018 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 APJL_0439 8738be364225009c7ec2ccfce258219d 235 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 224 2.3E-78 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APJL_0439 8738be364225009c7ec2ccfce258219d 235 SMART SM00849 12 165 7.7E-26 T 11-10-2018 IPR001279 Metallo-beta-lactamase APJL_0439 8738be364225009c7ec2ccfce258219d 235 Pfam PF00753 Metallo-beta-lactamase superfamily 14 139 2.8E-10 T 11-10-2018 IPR001279 Metallo-beta-lactamase APJL_0439 8738be364225009c7ec2ccfce258219d 235 SUPERFAMILY SSF56281 2 234 4.32E-56 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APJL_0439 8738be364225009c7ec2ccfce258219d 235 Gene3D G3DSA:3.60.15.10 1 235 1.1E-72 T 11-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like APJL_0439 8738be364225009c7ec2ccfce258219d 235 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 235 39.258 T 11-10-2018 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APJL_0439 8738be364225009c7ec2ccfce258219d 235 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 166 235 6.4E-16 T 11-10-2018 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 199 444 1.7E-85 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 370 381 4.3E-32 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 190 212 4.3E-32 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 232 252 4.3E-32 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 111 125 4.3E-32 T 11-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 119 132 - T 11-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 SMART SM00839 201 444 7.8E-87 T 11-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 PIRSF PIRSF000185 19 446 4.2E-119 T 11-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 Gene3D G3DSA:1.10.285.10 6 381 3.5E-173 T 11-10-2018 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 54 182 4.6E-52 T 11-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 Gene3D G3DSA:1.10.285.10 382 446 2.4E-9 T 11-10-2018 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 Gene3D G3DSA:3.40.50.720 206 371 3.5E-173 T 11-10-2018 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 Gene3D G3DSA:3.40.50.10860 52 187 3.5E-173 T 11-10-2018 APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 SUPERFAMILY SSF51735 199 445 1.08E-73 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0452 795919cfa25d15bad7b0235a6c81f7d1 446 SUPERFAMILY SSF53223 4 193 1.31E-75 T 11-10-2018 APJL_0193 562781f804b636adacb798f59f74c444 277 SUPERFAMILY SSF53335 5 275 2.65E-74 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0193 562781f804b636adacb798f59f74c444 277 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 275 1.9E-91 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APJL_0193 562781f804b636adacb798f59f74c444 277 Gene3D G3DSA:3.40.50.150 7 246 5.9E-80 T 11-10-2018 APJL_0193 562781f804b636adacb798f59f74c444 277 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 259 2.4E-68 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APJL_0193 562781f804b636adacb798f59f74c444 277 PIRSF PIRSF000398 1 277 1.4E-65 T 11-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 APJL_0193 562781f804b636adacb798f59f74c444 277 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 4.0E-18 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APJL_0193 562781f804b636adacb798f59f74c444 277 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 183 195 4.0E-18 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APJL_0193 562781f804b636adacb798f59f74c444 277 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 35 49 4.0E-18 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APJL_0193 562781f804b636adacb798f59f74c444 277 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 54 67 4.0E-18 T 11-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 APJL_0193 562781f804b636adacb798f59f74c444 277 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 186 192 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_0193 562781f804b636adacb798f59f74c444 277 Gene3D G3DSA:1.10.1020.10 61 161 5.9E-80 T 11-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 APJL_1809 d7044cf5a060193dd89384ffd84dd448 130 SUPERFAMILY SSF56047 2 129 3.01E-46 T 11-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1809 d7044cf5a060193dd89384ffd84dd448 130 Pfam PF00410 Ribosomal protein S8 5 129 8.3E-48 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1809 d7044cf5a060193dd89384ffd84dd448 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.95 T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1809 d7044cf5a060193dd89384ffd84dd448 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 11-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1809 d7044cf5a060193dd89384ffd84dd448 130 Gene3D G3DSA:3.30.1490.10 73 130 2.9E-25 T 11-10-2018 APJL_1809 d7044cf5a060193dd89384ffd84dd448 130 Gene3D G3DSA:3.30.1370.30 2 72 8.8E-27 T 11-10-2018 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 Gene3D G3DSA:3.30.1360.70 1 79 1.4E-27 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 SUPERFAMILY SSF52374 81 426 4.5E-94 T 11-10-2018 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 SMART SM01016 1 60 7.5E-15 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 PRINTS PR01038 Arginyl-tRNA synthetase signature 87 102 5.9E-27 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 PRINTS PR01038 Arginyl-tRNA synthetase signature 126 139 5.9E-27 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 PRINTS PR01038 Arginyl-tRNA synthetase signature 102 118 5.9E-27 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 PRINTS PR01038 Arginyl-tRNA synthetase signature 276 297 5.9E-27 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 Gene3D G3DSA:3.40.50.620 80 426 6.2E-110 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 Pfam PF00750 tRNA synthetases class I (R) 74 419 6.3E-166 T 11-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 Hamap MF_00123 Arginine--tRNA ligase [argS]. 1 548 26.593 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 Pfam PF05746 DALR anticodon binding domain 433 548 4.7E-34 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 SMART SM00836 433 548 4.1E-39 T 11-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 Gene3D G3DSA:1.10.730.10 427 548 6.9E-35 T 11-10-2018 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 SUPERFAMILY SSF55190 2 69 1.44E-20 T 11-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 SUPERFAMILY SSF47323 427 548 4.64E-37 T 11-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 5 60 2.0E-18 T 11-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 95 106 - T 11-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_0040 a7a63a10b87902bbe00a03eeaf51a6bc 548 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 1 548 2.3E-198 T 11-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 SMART SM00876 236 328 3.2E-41 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 236 325 8.0E-17 T 11-10-2018 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 Hamap MF_01694 Biotin synthase [bioB]. 24 329 38.467 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 SUPERFAMILY SSF102114 23 328 7.98E-86 T 11-10-2018 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 Pfam PF04055 Radical SAM superfamily 66 217 5.3E-15 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 Gene3D G3DSA:3.20.20.70 20 330 8.8E-115 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 SMART SM00729 59 265 1.4E-29 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 TIGRFAM TIGR00433 bioB: biotin synthase 30 326 1.3E-113 T 11-10-2018 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APJL_0118 850c8fed3e27b3b618a786d7e3321df2 336 PIRSF PIRSF001619 5 333 5.0E-124 T 11-10-2018 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 APJL_0278 08720b8bb2497be114159ba36443d4e3 364 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 66 357 1.1E-63 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APJL_0278 08720b8bb2497be114159ba36443d4e3 364 Gene3D G3DSA:3.40.50.1100 94 190 2.6E-88 T 11-10-2018 APJL_0278 08720b8bb2497be114159ba36443d4e3 364 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 86 99 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 APJL_0278 08720b8bb2497be114159ba36443d4e3 364 SUPERFAMILY SSF53686 3 361 4.85E-86 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APJL_0278 08720b8bb2497be114159ba36443d4e3 364 Gene3D G3DSA:3.40.50.1100 50 362 2.6E-88 T 11-10-2018 APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 PIRSF PIRSF036298 1 299 3.2E-159 T 11-10-2018 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 Gene3D G3DSA:3.30.70.20 19 163 4.2E-100 T 11-10-2018 APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 Gene3D G3DSA:3.30.70.20 29 228 4.2E-100 T 11-10-2018 APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 Pfam PF13247 4Fe-4S dicluster domain 93 189 1.4E-25 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 9 291 3.7E-155 T 11-10-2018 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 Gene3D G3DSA:1.20.5.480 248 294 8.0E-13 T 11-10-2018 IPR038384 Formate dehydrogenase, C-terminal domain superfamily APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 SUPERFAMILY SSF54862 30 280 4.08E-69 T 11-10-2018 APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 Pfam PF09163 Formate dehydrogenase N, transmembrane 247 289 3.8E-19 T 11-10-2018 IPR015246 Formate dehydrogenase, transmembrane APJL_0906 b6668edd4046b1de84af0d7ba576bb3b 299 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 134 145 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 Pfam PF09383 NIL domain 268 339 5.6E-16 T 11-10-2018 IPR018449 NIL domain APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 Gene3D G3DSA:3.40.50.300 1 232 9.3E-77 T 11-10-2018 APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 SMART SM00930 265 340 2.5E-19 T 11-10-2018 IPR018449 NIL domain APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 Gene3D G3DSA:3.30.70.260 233 343 6.4E-31 T 11-10-2018 APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 SUPERFAMILY SSF52540 1 240 8.44E-84 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 7.6E-182 T 11-10-2018 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 Pfam PF00005 ABC transporter 21 169 1.3E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 SMART SM00382 30 217 3.5E-15 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0924 05589df442ab9ac2cc79156faf57a2aa 344 SUPERFAMILY SSF55021 248 343 2.98E-21 T 11-10-2018 APJL_1140 45aad8805226b19c3956d1b8e8e6dd97 258 Pfam PF13525 Outer membrane lipoprotein 29 235 1.1E-57 T 11-10-2018 IPR039565 Outer membrane lipoprotein BamD-like APJL_1140 45aad8805226b19c3956d1b8e8e6dd97 258 Gene3D G3DSA:1.25.40.10 30 249 1.6E-49 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1140 45aad8805226b19c3956d1b8e8e6dd97 258 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 3 242 33.18 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD APJL_1140 45aad8805226b19c3956d1b8e8e6dd97 258 SUPERFAMILY SSF48452 27 121 1.98E-8 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1140 45aad8805226b19c3956d1b8e8e6dd97 258 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 6 244 1.8E-70 T 11-10-2018 IPR017689 Outer membrane protein assembly factor BamD APJL_0860 a98d14bb55f2265786e4855d28ed423b 317 Gene3D G3DSA:1.10.3720.10 88 309 6.2E-24 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0860 a98d14bb55f2265786e4855d28ed423b 317 SUPERFAMILY SSF161098 93 300 1.31E-19 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0860 a98d14bb55f2265786e4855d28ed423b 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 315 4.3E-37 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0733 935dadde6f6a74a5d5797a7ae9e563ff 123 PIRSF PIRSF005610 1 123 6.5E-40 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB APJL_0733 935dadde6f6a74a5d5797a7ae9e563ff 123 Pfam PF04247 Invasion gene expression up-regulator, SirB 6 122 4.2E-28 T 11-10-2018 IPR007360 Invasion gene expression up-regulator, SirB APJL_0218 a7e971ac60e738290b78de72f60e0b00 319 TIGRFAM TIGR02565 cas_Csy2: CRISPR type I-F/YPEST-associated protein Csy2 7 316 2.6E-111 T 11-10-2018 IPR013398 CRISPR-associated protein Csy2 APJL_0218 a7e971ac60e738290b78de72f60e0b00 319 Pfam PF09614 CRISPR-associated protein (Cas_Csy2) 8 315 6.9E-103 T 11-10-2018 IPR013398 CRISPR-associated protein Csy2 APJL_0717 8f709fa667315fe347e4a797b7163836 252 SMART SM00382 26 213 4.1E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0717 8f709fa667315fe347e4a797b7163836 252 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0717 8f709fa667315fe347e4a797b7163836 252 Gene3D G3DSA:3.40.50.300 1 248 4.6E-65 T 11-10-2018 APJL_0717 8f709fa667315fe347e4a797b7163836 252 SUPERFAMILY SSF52540 1 227 7.32E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0717 8f709fa667315fe347e4a797b7163836 252 Pfam PF00005 ABC transporter 17 164 6.6E-32 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0921 ecce114c4ee997384e9a0c46a7750430 272 PIRSF PIRSF002854 1 272 1.6E-92 T 11-10-2018 IPR004872 Lipoprotein NlpA family APJL_0921 ecce114c4ee997384e9a0c46a7750430 272 SUPERFAMILY SSF53850 35 272 1.63E-75 T 11-10-2018 APJL_0921 ecce114c4ee997384e9a0c46a7750430 272 Pfam PF03180 NLPA lipoprotein 36 272 2.8E-90 T 11-10-2018 IPR004872 Lipoprotein NlpA family APJL_0921 ecce114c4ee997384e9a0c46a7750430 272 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 11 272 2.5E-106 T 11-10-2018 IPR004872 Lipoprotein NlpA family APJL_0921 ecce114c4ee997384e9a0c46a7750430 272 Gene3D G3DSA:3.40.190.10 37 265 2.5E-83 T 11-10-2018 APJL_0921 ecce114c4ee997384e9a0c46a7750430 272 Gene3D G3DSA:3.40.190.10 118 222 2.5E-83 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 SMART SM00278 492 511 14.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 SMART SM00278 458 477 1.2 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 SMART SM00278 556 575 3.3 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 SMART SM00278 524 543 43.0 T 11-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 21 675 1.6E-273 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 SUPERFAMILY SSF47781 416 596 5.56E-65 T 11-10-2018 IPR010994 RuvA domain 2-like APJL_1315 84444553387cb23fc17995ebc1570374 682 Pfam PF14520 Helix-hairpin-helix domain 458 507 6.8E-5 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 SUPERFAMILY SSF56091 17 328 3.52E-118 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 Pfam PF12826 Helix-hairpin-helix motif 522 585 4.3E-24 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 SUPERFAMILY SSF50249 330 412 3.08E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1315 84444553387cb23fc17995ebc1570374 682 Gene3D G3DSA:2.40.50.140 331 402 8.6E-34 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 606 677 4.4E-16 T 11-10-2018 IPR001357 BRCT domain APJL_1315 84444553387cb23fc17995ebc1570374 682 Gene3D G3DSA:3.30.470.30 130 264 8.8E-97 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 Hamap MF_01588 DNA ligase [ligA]. 16 679 53.93 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 SMART SM00532 13 460 1.2E-277 T 11-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 APJL_1315 84444553387cb23fc17995ebc1570374 682 Gene3D G3DSA:1.10.287.610 14 78 1.1E-26 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 126 155 - T 11-10-2018 IPR018239 NAD-dependent DNA ligase, active site APJL_1315 84444553387cb23fc17995ebc1570374 682 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 343 358 - T 11-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site APJL_1315 84444553387cb23fc17995ebc1570374 682 PIRSF PIRSF001604 5 682 1.6E-254 T 11-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 SUPERFAMILY SSF52113 605 678 1.44E-19 T 11-10-2018 IPR036420 BRCT domain superfamily APJL_1315 84444553387cb23fc17995ebc1570374 682 Gene3D G3DSA:2.20.70.80 403 443 2.1E-20 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 Gene3D G3DSA:3.40.50.10190 598 680 6.8E-29 T 11-10-2018 IPR036420 BRCT domain superfamily APJL_1315 84444553387cb23fc17995ebc1570374 682 Gene3D G3DSA:1.10.150.20 518 597 5.8E-30 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 Gene3D G3DSA:3.30.1490.70 91 330 8.8E-97 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 334 410 9.6E-36 T 11-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 Gene3D G3DSA:1.10.150.20 444 517 3.3E-30 T 11-10-2018 APJL_1315 84444553387cb23fc17995ebc1570374 682 SMART SM00292 605 682 2.1E-15 T 11-10-2018 IPR001357 BRCT domain APJL_1315 84444553387cb23fc17995ebc1570374 682 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 420 446 3.2E-9 T 11-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 APJL_1315 84444553387cb23fc17995ebc1570374 682 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 16 330 1.2E-134 T 11-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 23 154 3.2E-24 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 SUPERFAMILY SSF50447 171 319 1.02E-31 T 11-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily APJL_0053 40c35ed78b612ca05b972b73550c3269 630 Pfam PF00679 Elongation factor G C-terminus 417 496 1.7E-22 T 11-10-2018 IPR000640 Elongation factor EFG, domain V-like APJL_0053 40c35ed78b612ca05b972b73550c3269 630 PRINTS PR00315 GTP-binding elongation factor signature 26 39 1.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 PRINTS PR00315 GTP-binding elongation factor signature 107 118 1.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 PRINTS PR00315 GTP-binding elongation factor signature 71 79 1.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 PRINTS PR00315 GTP-binding elongation factor signature 91 101 1.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 PRINTS PR00315 GTP-binding elongation factor signature 143 152 1.0E-14 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 Gene3D G3DSA:3.30.70.870 326 610 3.8E-129 T 11-10-2018 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 Gene3D G3DSA:2.40.50.250 503 619 3.8E-129 T 11-10-2018 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 Pfam PF03144 Elongation factor Tu domain 2 239 309 4.0E-10 T 11-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 Gene3D G3DSA:3.40.50.300 20 218 3.0E-67 T 11-10-2018 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 Pfam PF00009 Elongation factor Tu GTP binding domain 23 215 8.5E-56 T 11-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 SUPERFAMILY SSF54980 322 407 1.29E-15 T 11-10-2018 IPR035647 EF-G domain III/V-like APJL_0053 40c35ed78b612ca05b972b73550c3269 630 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 64 79 - T 11-10-2018 IPR031157 Tr-type G domain, conserved site APJL_0053 40c35ed78b612ca05b972b73550c3269 630 Gene3D G3DSA:3.30.70.240 409 502 3.8E-129 T 11-10-2018 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 Gene3D G3DSA:2.40.30.10 219 319 2.3E-34 T 11-10-2018 APJL_0053 40c35ed78b612ca05b972b73550c3269 630 SUPERFAMILY SSF52540 14 227 2.64E-58 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0053 40c35ed78b612ca05b972b73550c3269 630 SUPERFAMILY SSF54980 418 532 5.28E-27 T 11-10-2018 IPR035647 EF-G domain III/V-like APJL_0053 40c35ed78b612ca05b972b73550c3269 630 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 24 619 3.8E-290 T 11-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 52.173 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 2.5E-75 T 11-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 Pfam PF00406 Adenylate kinase 5 185 5.8E-59 T 11-10-2018 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 SUPERFAMILY SSF52540 1 212 1.41E-45 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1311 51f760cca026ce15f7a159cda5493b79 214 PRINTS PR00094 Adenylate kinase signature 156 171 4.9E-34 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 PRINTS PR00094 Adenylate kinase signature 4 17 4.9E-34 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 PRINTS PR00094 Adenylate kinase signature 81 97 4.9E-34 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 PRINTS PR00094 Adenylate kinase signature 32 46 4.9E-34 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 PRINTS PR00094 Adenylate kinase signature 173 187 4.9E-34 T 11-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 1.8E-15 T 11-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 Gene3D G3DSA:3.40.50.300 1 214 2.7E-78 T 11-10-2018 APJL_1311 51f760cca026ce15f7a159cda5493b79 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 APJL_0869 a3a0c72b07e01aa9c6b075e65076df30 671 Pfam PF01266 FAD dependent oxidoreductase 268 638 1.3E-40 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APJL_0869 a3a0c72b07e01aa9c6b075e65076df30 671 Gene3D G3DSA:3.30.9.10 352 572 1.2E-121 T 11-10-2018 APJL_0869 a3a0c72b07e01aa9c6b075e65076df30 671 SUPERFAMILY SSF51905 268 662 9.71E-28 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0869 a3a0c72b07e01aa9c6b075e65076df30 671 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 121 244 5.5E-42 T 11-10-2018 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 MetaCyc: PWY-7892 APJL_0869 a3a0c72b07e01aa9c6b075e65076df30 671 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 268 667 2.8E-137 T 11-10-2018 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 APJL_0869 a3a0c72b07e01aa9c6b075e65076df30 671 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 9 662 24.792 T 11-10-2018 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 MetaCyc: PWY-7892 APJL_0869 a3a0c72b07e01aa9c6b075e65076df30 671 Gene3D G3DSA:3.50.50.60 268 664 1.2E-121 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0869 a3a0c72b07e01aa9c6b075e65076df30 671 Gene3D G3DSA:3.40.50.150 11 252 1.3E-90 T 11-10-2018 APJL_1545 f9a8f32ec12fe6220c40fbe3ecb6bf6f 160 ProSitePatterns PS00855 Signal peptidases II signature. 100 112 - T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APJL_1545 f9a8f32ec12fe6220c40fbe3ecb6bf6f 160 Pfam PF01252 Signal peptidase (SPase) II 13 152 1.5E-38 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APJL_1545 f9a8f32ec12fe6220c40fbe3ecb6bf6f 160 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 3 158 17.456 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APJL_1545 f9a8f32ec12fe6220c40fbe3ecb6bf6f 160 TIGRFAM TIGR00077 lspA: signal peptidase II 4 159 1.6E-54 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APJL_1545 f9a8f32ec12fe6220c40fbe3ecb6bf6f 160 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 97 112 2.2E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APJL_1545 f9a8f32ec12fe6220c40fbe3ecb6bf6f 160 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 133 149 2.2E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APJL_1545 f9a8f32ec12fe6220c40fbe3ecb6bf6f 160 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 49 57 2.2E-17 T 11-10-2018 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 MetaCyc: PWY-7884 APJL_1077 878e103ec8ee4a27ec37f74f39f6f587 198 SUPERFAMILY SSF101756 103 196 2.75E-25 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily APJL_1077 878e103ec8ee4a27ec37f74f39f6f587 198 Gene3D G3DSA:2.40.50.200 92 198 4.6E-24 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily APJL_1077 878e103ec8ee4a27ec37f74f39f6f587 198 Pfam PF04076 Bacterial OB fold (BOF) protein 106 195 5.8E-23 T 11-10-2018 IPR005220 Bacterial OB-fold APJL_1463 70396b725809bcf0e20b4cb6a43b1907 176 TIGRFAM TIGR00402 napF: ferredoxin-type protein NapF 11 169 3.7E-43 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 APJL_1463 70396b725809bcf0e20b4cb6a43b1907 176 Gene3D G3DSA:3.30.70.20 108 172 8.3E-10 T 11-10-2018 APJL_1463 70396b725809bcf0e20b4cb6a43b1907 176 SUPERFAMILY SSF54862 46 171 2.09E-20 T 11-10-2018 APJL_1463 70396b725809bcf0e20b4cb6a43b1907 176 Gene3D G3DSA:3.30.70.20 46 98 2.0E-8 T 11-10-2018 APJL_1463 70396b725809bcf0e20b4cb6a43b1907 176 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 154 165 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1463 70396b725809bcf0e20b4cb6a43b1907 176 Pfam PF12838 4Fe-4S dicluster domain 121 168 9.3E-9 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1463 70396b725809bcf0e20b4cb6a43b1907 176 Pfam PF13187 4Fe-4S dicluster domain 49 95 1.6E-7 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1463 70396b725809bcf0e20b4cb6a43b1907 176 Hamap MF_02201 Ferredoxin-type protein NapF [napF]. 39 175 22.791 T 11-10-2018 IPR004496 Ferredoxin-type protein NapF GO:0051539 APJL_1632 c8740df7bf7528c92004714d88ba0724 653 Pfam PF00905 Penicillin binding protein transpeptidase domain 281 619 3.5E-82 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APJL_1632 c8740df7bf7528c92004714d88ba0724 653 Hamap MF_02081 Peptidoglycan D,D-transpeptidase MrdA [mrdA]. 13 626 51.119 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_1632 c8740df7bf7528c92004714d88ba0724 653 Pfam PF03717 Penicillin-binding Protein dimerisation domain 74 249 6.3E-45 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 APJL_1632 c8740df7bf7528c92004714d88ba0724 653 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 29 623 4.3E-233 T 11-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_1632 c8740df7bf7528c92004714d88ba0724 653 Gene3D G3DSA:3.90.1310.10 74 258 1.2E-45 T 11-10-2018 APJL_1632 c8740df7bf7528c92004714d88ba0724 653 SUPERFAMILY SSF56519 67 263 2.88E-49 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 APJL_1632 c8740df7bf7528c92004714d88ba0724 653 Gene3D G3DSA:3.40.710.10 259 630 3.8E-95 T 11-10-2018 APJL_1632 c8740df7bf7528c92004714d88ba0724 653 SUPERFAMILY SSF56601 264 624 8.72E-96 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APJL_1632 c8740df7bf7528c92004714d88ba0724 653 Gene3D G3DSA:3.30.1390.30 95 170 1.2E-45 T 11-10-2018 APJL_1658 6d94f74ce508ac6b7040842da7a8180b 251 SUPERFAMILY SSF53850 42 249 9.95E-23 T 11-10-2018 APJL_1658 6d94f74ce508ac6b7040842da7a8180b 251 Gene3D G3DSA:3.40.190.290 44 246 3.8E-34 T 11-10-2018 APJL_1658 6d94f74ce508ac6b7040842da7a8180b 251 Pfam PF03466 LysR substrate binding domain 43 245 1.1E-17 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_1722 11ba82223b2c1af48a8bb281925d4835 213 Pfam PF07274 Protein of unknown function (DUF1440) 26 189 2.3E-50 T 11-10-2018 IPR009898 Protein of unknown function DUF1440 APJL_2046 635d3aaebd714e7237136d4db9dd7dcc 137 Pfam PF07681 DoxX 12 91 5.2E-12 T 11-10-2018 IPR032808 DoxX family APJL_2007 13f6962c2fbd3d94147fbd90897142a6 314 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 296 1.7E-120 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APJL_2007 13f6962c2fbd3d94147fbd90897142a6 314 Gene3D G3DSA:1.10.20.140 114 185 1.1E-103 T 11-10-2018 APJL_2007 13f6962c2fbd3d94147fbd90897142a6 314 SUPERFAMILY SSF52540 8 150 5.61E-17 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_2007 13f6962c2fbd3d94147fbd90897142a6 314 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 309 29.607 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APJL_2007 13f6962c2fbd3d94147fbd90897142a6 314 Gene3D G3DSA:3.40.50.300 11 292 1.1E-103 T 11-10-2018 APJL_2007 13f6962c2fbd3d94147fbd90897142a6 314 Pfam PF01715 IPP transferase 41 284 1.9E-84 T 11-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 APJL_0353 3276b98d26c5b1796d240e6efe966618 167 Gene3D G3DSA:2.60.450.10 22 157 5.3E-45 T 11-10-2018 APJL_0353 3276b98d26c5b1796d240e6efe966618 167 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 22 160 1.6E-49 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 APJL_0353 3276b98d26c5b1796d240e6efe966618 167 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 8 160 24.217 T 11-10-2018 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 APJL_0353 3276b98d26c5b1796d240e6efe966618 167 Pfam PF03968 OstA-like protein 32 141 1.2E-29 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal APJL_0343 08a9f82dac259237a095535100c2ea70 323 Pfam PF02769 AIR synthase related protein, C-terminal domain 145 314 3.6E-26 T 11-10-2018 IPR010918 PurM-like, C-terminal domain APJL_0343 08a9f82dac259237a095535100c2ea70 323 SUPERFAMILY SSF55326 8 136 1.96E-37 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_0343 08a9f82dac259237a095535100c2ea70 323 Gene3D G3DSA:3.30.1330.10 5 139 6.6E-43 T 11-10-2018 IPR036921 PurM-like, N-terminal domain superfamily APJL_0343 08a9f82dac259237a095535100c2ea70 323 Pfam PF00586 AIR synthase related protein, N-terminal domain 26 133 1.2E-19 T 11-10-2018 IPR016188 PurM-like, N-terminal domain APJL_0343 08a9f82dac259237a095535100c2ea70 323 Hamap MF_00625 Selenide, water dikinase [selD]. 1 323 39.352 T 11-10-2018 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 APJL_0343 08a9f82dac259237a095535100c2ea70 323 PIRSF PIRSF036407 1 322 8.1E-109 T 11-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 APJL_0343 08a9f82dac259237a095535100c2ea70 323 SUPERFAMILY SSF56042 141 314 1.26E-49 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_0343 08a9f82dac259237a095535100c2ea70 323 Gene3D G3DSA:3.90.650.10 140 323 4.4E-51 T 11-10-2018 IPR036676 PurM-like, C-terminal domain superfamily APJL_0343 08a9f82dac259237a095535100c2ea70 323 TIGRFAM TIGR00476 selD: selenide, water dikinase 2 288 4.0E-121 T 11-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 APJL_0617 47b61fc64971d57abd24168d4a70bf1e 163 SUPERFAMILY SSF52540 1 111 4.69E-28 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0617 47b61fc64971d57abd24168d4a70bf1e 163 Gene3D G3DSA:3.30.60.20 114 161 6.4E-9 T 11-10-2018 APJL_0617 47b61fc64971d57abd24168d4a70bf1e 163 Pfam PF00265 Thymidine kinase 1 156 1.5E-49 T 11-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 APJL_0617 47b61fc64971d57abd24168d4a70bf1e 163 PIRSF PIRSF035805 1 163 7.8E-48 T 11-10-2018 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 APJL_0617 47b61fc64971d57abd24168d4a70bf1e 163 Gene3D G3DSA:3.40.50.300 1 111 3.1E-19 T 11-10-2018 APJL_0617 47b61fc64971d57abd24168d4a70bf1e 163 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 143 156 - T 11-10-2018 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-539107|Reactome: R-HSA-73614 APJL_0617 47b61fc64971d57abd24168d4a70bf1e 163 SUPERFAMILY SSF57716 112 160 7.13E-16 T 11-10-2018 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 10 293 1.4E-148 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 62 77 8.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 114 138 8.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 163 178 8.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 254 270 8.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 83 103 8.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 140 160 8.1E-71 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 Gene3D G3DSA:1.20.58.180 216 298 4.6E-33 T 11-10-2018 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 Gene3D G3DSA:3.30.930.10 1 215 2.8E-110 T 11-10-2018 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 8 302 1.0E-175 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 8 294 62.079 T 11-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 APJL_1836 0bbdf8aec6cd21581f288c27ee38a267 304 SUPERFAMILY SSF55681 9 293 2.21E-132 T 11-10-2018 APJL_0780 fe92d9d912e5204a66278a8805479e23 210 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 2 210 27.996 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 APJL_0780 fe92d9d912e5204a66278a8805479e23 210 SUPERFAMILY SSF89392 40 209 2.98E-53 T 11-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX APJL_0780 fe92d9d912e5204a66278a8805479e23 210 Pfam PF03550 Outer membrane lipoprotein LolB 54 208 4.2E-38 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 APJL_0780 fe92d9d912e5204a66278a8805479e23 210 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 6 209 4.4E-58 T 11-10-2018 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 APJL_0780 fe92d9d912e5204a66278a8805479e23 210 Gene3D G3DSA:2.50.20.10 35 210 2.6E-46 T 11-10-2018 APJL_1254 d4fdfb8773ab509bac400158d31d9664 264 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 198 214 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APJL_1254 d4fdfb8773ab509bac400158d31d9664 264 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 11-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 APJL_1254 d4fdfb8773ab509bac400158d31d9664 264 SUPERFAMILY SSF51556 1 261 5.45E-65 T 11-10-2018 IPR032466 Metal-dependent hydrolase APJL_1254 d4fdfb8773ab509bac400158d31d9664 264 PIRSF PIRSF005902 1 264 1.8E-62 T 11-10-2018 IPR001130 TatD family GO:0016788 APJL_1254 d4fdfb8773ab509bac400158d31d9664 264 Gene3D G3DSA:3.20.20.140 1 263 3.3E-70 T 11-10-2018 APJL_1254 d4fdfb8773ab509bac400158d31d9664 264 Pfam PF01026 TatD related DNase 4 261 1.3E-58 T 11-10-2018 IPR001130 TatD family GO:0016788 APJL_1813 042a21adc452879dedff67d03e5ab2b6 59 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 59 20.843 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1813 042a21adc452879dedff67d03e5ab2b6 59 PIRSF PIRSF002211 1 59 1.8E-27 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1813 042a21adc452879dedff67d03e5ab2b6 59 Gene3D G3DSA:3.30.1390.20 1 59 2.1E-26 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily APJL_1813 042a21adc452879dedff67d03e5ab2b6 59 ProSitePatterns PS00634 Ribosomal protein L30 signature. 23 55 - T 11-10-2018 IPR018038 Ribosomal protein L30, conserved site APJL_1813 042a21adc452879dedff67d03e5ab2b6 59 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 5 59 5.4E-24 T 11-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1813 042a21adc452879dedff67d03e5ab2b6 59 Pfam PF00327 Ribosomal protein L30p/L7e 5 55 3.4E-19 T 11-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain APJL_1813 042a21adc452879dedff67d03e5ab2b6 59 SUPERFAMILY SSF55129 3 59 1.44E-20 T 11-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily APJL_1590 e36efbdc4ca220d3e7926ed4844ee534 423 SUPERFAMILY SSF53383 42 421 1.12E-44 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_1590 e36efbdc4ca220d3e7926ed4844ee534 423 Gene3D G3DSA:3.40.640.10 56 320 6.1E-153 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_1590 e36efbdc4ca220d3e7926ed4844ee534 423 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 423 213.842 T 11-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 APJL_1590 e36efbdc4ca220d3e7926ed4844ee534 423 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 2 421 2.0E-174 T 11-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 APJL_1590 e36efbdc4ca220d3e7926ed4844ee534 423 Pfam PF03841 L-seryl-tRNA selenium transferase 44 409 3.3E-170 T 11-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 APJL_1590 e36efbdc4ca220d3e7926ed4844ee534 423 Gene3D G3DSA:3.90.1150.110 2 411 6.1E-153 T 11-10-2018 APJL_1577 37c24e4a8be16e5c1d01a6fb7109a41a 381 PIRSF PIRSF000390 1 380 3.0E-111 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase APJL_1577 37c24e4a8be16e5c1d01a6fb7109a41a 381 SUPERFAMILY SSF53383 2 377 9.76E-101 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_1577 37c24e4a8be16e5c1d01a6fb7109a41a 381 TIGRFAM TIGR02379 ECA_wecE: TDP-4-keto-6-deoxy-D-glucose transaminase 3 376 5.4E-206 T 11-10-2018 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like MetaCyc: PWY-7315 APJL_1577 37c24e4a8be16e5c1d01a6fb7109a41a 381 Gene3D G3DSA:3.90.1150.10 251 376 5.8E-23 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_1577 37c24e4a8be16e5c1d01a6fb7109a41a 381 Gene3D G3DSA:3.40.640.10 1 250 3.5E-83 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_1577 37c24e4a8be16e5c1d01a6fb7109a41a 381 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 372 8.6E-87 T 11-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase APJL_0526 c3fdd19e386e6009c9bffe13db110b12 136 Gene3D G3DSA:3.20.20.70 1 135 2.4E-60 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0526 c3fdd19e386e6009c9bffe13db110b12 136 SUPERFAMILY SSF110399 2 118 4.05E-45 T 11-10-2018 APJL_0526 c3fdd19e386e6009c9bffe13db110b12 136 Pfam PF05690 Thiazole biosynthesis protein ThiG 1 130 3.8E-59 T 11-10-2018 IPR033983 Thiazole synthase ThiG KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 SMART SM00382 290 466 3.3E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 SMART SM00382 29 228 1.4E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 ProSitePatterns PS00211 ABC transporters family signature. 390 404 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 SUPERFAMILY SSF52540 259 464 3.32E-44 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 SUPERFAMILY SSF52540 3 254 2.0E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 Pfam PF00005 ABC transporter 21 171 3.2E-23 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 Pfam PF00005 ABC transporter 283 418 4.5E-21 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 Gene3D G3DSA:3.40.50.300 1 265 1.4E-59 T 11-10-2018 APJL_0027 c4de8006c5f25131cfbb2d1c74b4aa51 467 Gene3D G3DSA:3.40.50.300 266 465 4.6E-46 T 11-10-2018 APJL_1672 d907ec4bc368eaaf217488bef0df14a8 73 Pfam PF04102 SlyX 9 73 3.2E-23 T 11-10-2018 IPR007236 SlyX APJL_1672 d907ec4bc368eaaf217488bef0df14a8 73 Hamap MF_00715 Protein SlyX [slyX]. 6 73 16.536 T 11-10-2018 IPR007236 SlyX APJL_1672 d907ec4bc368eaaf217488bef0df14a8 73 Gene3D G3DSA:1.20.5.300 2 53 7.0E-6 T 11-10-2018 APJL_1305 b463c268b773c94db64b6df20552c231 267 Gene3D G3DSA:3.40.50.300 5 257 1.6E-62 T 11-10-2018 APJL_1305 b463c268b773c94db64b6df20552c231 267 SUPERFAMILY SSF52540 7 238 3.22E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1305 b463c268b773c94db64b6df20552c231 267 Pfam PF00005 ABC transporter 23 171 4.5E-28 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1305 b463c268b773c94db64b6df20552c231 267 SMART SM00382 32 229 1.1E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1305 b463c268b773c94db64b6df20552c231 267 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0996 5649a6e3b15e7bad17f95942b7f699b0 458 Pfam PF13726 Na+-H+ antiporter family 4 97 1.9E-25 T 11-10-2018 IPR032813 Putative Na+/H+ antiporter, N-terminal APJL_0996 5649a6e3b15e7bad17f95942b7f699b0 458 Pfam PF03553 Na+/H+ antiporter family 162 452 7.5E-71 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 APJL_1995 dc075de01cc9ece808ecfb11c6d13cfc 162 Pfam PF00652 Ricin-type beta-trefoil lectin domain 49 160 5.9E-24 T 11-10-2018 IPR000772 Ricin B, lectin domain APJL_1995 dc075de01cc9ece808ecfb11c6d13cfc 162 SMART SM00458 48 162 2.8E-20 T 11-10-2018 IPR000772 Ricin B, lectin domain APJL_1995 dc075de01cc9ece808ecfb11c6d13cfc 162 Gene3D G3DSA:2.80.10.50 17 87 2.3E-6 T 11-10-2018 APJL_1995 dc075de01cc9ece808ecfb11c6d13cfc 162 SUPERFAMILY SSF50370 43 161 2.93E-30 T 11-10-2018 IPR035992 Ricin B-like lectins APJL_1995 dc075de01cc9ece808ecfb11c6d13cfc 162 Gene3D G3DSA:2.80.10.50 88 162 3.2E-20 T 11-10-2018 APJL_0756 5698a27e8b9119271a236ca54d8bb70a 262 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 252 2.4E-85 T 11-10-2018 APJL_0756 5698a27e8b9119271a236ca54d8bb70a 262 PIRSF PIRSF000094 1 260 1.2E-121 T 11-10-2018 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) GO:0004318|GO:0006633|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APJL_0756 5698a27e8b9119271a236ca54d8bb70a 262 Gene3D G3DSA:3.40.50.720 1 262 1.7E-61 T 11-10-2018 APJL_0756 5698a27e8b9119271a236ca54d8bb70a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 5.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0756 5698a27e8b9119271a236ca54d8bb70a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 5.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0756 5698a27e8b9119271a236ca54d8bb70a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 5.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0756 5698a27e8b9119271a236ca54d8bb70a 262 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 1 6 5.2E-9 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_0756 5698a27e8b9119271a236ca54d8bb70a 262 SUPERFAMILY SSF51735 6 253 4.0E-65 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_2045 84da09efe4a14466385567205e2183fa 183 Gene3D G3DSA:3.40.50.360 1 182 1.1E-41 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_2045 84da09efe4a14466385567205e2183fa 183 SUPERFAMILY SSF52218 3 174 1.44E-41 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_2045 84da09efe4a14466385567205e2183fa 183 Pfam PF03358 NADPH-dependent FMN reductase 4 141 4.2E-30 T 11-10-2018 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 APJL_0275 e24baf7d8d5403affd182d76c0d1ee63 210 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 2 112 1.0E-54 T 11-10-2018 IPR013559 YheO-like APJL_0275 e24baf7d8d5403affd182d76c0d1ee63 210 Pfam PF13309 HTH domain 144 204 1.2E-17 T 11-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain APJL_0275 e24baf7d8d5403affd182d76c0d1ee63 210 Pfam PF08348 YheO-like PAS domain 7 112 2.4E-31 T 11-10-2018 IPR013559 YheO-like APJL_1973 096b9ff4082baedf3126881f4ada5416 337 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 1 335 27.856 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1973 096b9ff4082baedf3126881f4ada5416 337 TIGRFAM TIGR00094 tRNA_TruD_broad: tRNA pseudouridine synthase, TruD family 2 335 3.3E-77 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1973 096b9ff4082baedf3126881f4ada5416 337 SUPERFAMILY SSF55120 3 332 1.22E-102 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1973 096b9ff4082baedf3126881f4ada5416 337 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 73 86 - T 11-10-2018 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 APJL_1973 096b9ff4082baedf3126881f4ada5416 337 Gene3D G3DSA:3.30.2340.10 163 295 1.1E-110 T 11-10-2018 APJL_1973 096b9ff4082baedf3126881f4ada5416 337 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 184 330 7.7E-22 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1973 096b9ff4082baedf3126881f4ada5416 337 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 5 164 1.8E-41 T 11-10-2018 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1973 096b9ff4082baedf3126881f4ada5416 337 Gene3D G3DSA:3.30.2350.20 14 330 1.1E-110 T 11-10-2018 APJL_1224 246a5ee04bf9ad1a3ba3739cfd0ca377 278 Pfam PF01904 Protein of unknown function DUF72 21 253 9.0E-49 T 11-10-2018 IPR002763 Protein of unknown function DUF72 APJL_1224 246a5ee04bf9ad1a3ba3739cfd0ca377 278 Gene3D G3DSA:3.20.20.410 1 259 2.6E-70 T 11-10-2018 IPR036520 UPF0759 superfamily APJL_1224 246a5ee04bf9ad1a3ba3739cfd0ca377 278 SUPERFAMILY SSF117396 3 256 4.71E-69 T 11-10-2018 IPR036520 UPF0759 superfamily APJL_0249 c82b61f935dda17b86f4d57703fbda64 393 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 13 393 67.248 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 APJL_0249 c82b61f935dda17b86f4d57703fbda64 393 PIRSF PIRSF000521 2 393 3.6E-40 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_0249 c82b61f935dda17b86f4d57703fbda64 393 SUPERFAMILY SSF53383 15 391 2.25E-117 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0249 c82b61f935dda17b86f4d57703fbda64 393 Pfam PF00202 Aminotransferase class-III 15 389 1.7E-106 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_0249 c82b61f935dda17b86f4d57703fbda64 393 Gene3D G3DSA:3.90.1150.10 11 381 5.1E-136 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0249 c82b61f935dda17b86f4d57703fbda64 393 Gene3D G3DSA:3.40.640.10 57 304 5.1E-136 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0249 c82b61f935dda17b86f4d57703fbda64 393 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 13 391 7.3E-137 T 11-10-2018 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 APJL_0249 c82b61f935dda17b86f4d57703fbda64 393 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 221 258 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 8 437 48.929 T 11-10-2018 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 Pfam PF00270 DEAD/DEAH box helicase 32 196 2.1E-45 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 SMART SM00490 266 347 3.8E-32 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 SUPERFAMILY SSF52540 81 365 2.1E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 Pfam PF00271 Helicase conserved C-terminal domain 241 347 1.8E-29 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 159 167 - T 11-10-2018 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 Gene3D G3DSA:3.40.50.300 1 216 2.0E-70 T 11-10-2018 APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 Gene3D G3DSA:3.40.50.300 223 392 2.3E-51 T 11-10-2018 APJL_2058 f6ea7d9cf08bf3b4a3939fa6daf64abc 449 SMART SM00487 27 229 6.2E-56 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_0283 eddfa701a982ad04f31515b1632482db 117 SUPERFAMILY SSF69721 6 117 1.07E-39 T 11-10-2018 IPR025526 DsrC-like domain superfamily APJL_0283 eddfa701a982ad04f31515b1632482db 117 Gene3D G3DSA:1.10.10.370 47 117 2.5E-30 T 11-10-2018 APJL_0283 eddfa701a982ad04f31515b1632482db 117 Pfam PF04358 DsrC like protein 12 117 1.3E-43 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE APJL_0283 eddfa701a982ad04f31515b1632482db 117 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 11 117 4.8E-48 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE APJL_0283 eddfa701a982ad04f31515b1632482db 117 PIRSF PIRSF006223 10 117 2.7E-43 T 11-10-2018 IPR007453 Sulphur transfer protein DsrC/TusE APJL_0283 eddfa701a982ad04f31515b1632482db 117 Gene3D G3DSA:3.30.1420.10 7 46 5.7E-10 T 11-10-2018 APJL_1066 9db700b9f017b36c58191e55b4eebeb0 173 SUPERFAMILY SSF50475 12 163 3.73E-34 T 11-10-2018 APJL_1066 9db700b9f017b36c58191e55b4eebeb0 173 TIGRFAM TIGR04110 heme_HutZ: heme utilization protein HutZ 4 171 4.5E-89 T 11-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain APJL_1066 9db700b9f017b36c58191e55b4eebeb0 173 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 15 105 2.7E-16 T 11-10-2018 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 APJL_1066 9db700b9f017b36c58191e55b4eebeb0 173 Gene3D G3DSA:2.30.110.10 11 173 4.0E-50 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APJL_1066 9db700b9f017b36c58191e55b4eebeb0 173 PIRSF PIRSF004633 1 173 8.3E-73 T 11-10-2018 IPR014419 Heme utilization protein with pyridoxamine 5'-phosphate domain APJL_2049 f61cf18738583f6bc6eb9f8da84ddd87 329 SUPERFAMILY SSF103481 56 157 5.75E-14 T 11-10-2018 APJL_2049 f61cf18738583f6bc6eb9f8da84ddd87 329 Pfam PF00892 EamA-like transporter family 22 156 3.3E-19 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_2049 f61cf18738583f6bc6eb9f8da84ddd87 329 Pfam PF00892 EamA-like transporter family 172 282 5.6E-14 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_0237 d691d821e2e49f3102044a6de98ad316 186 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 3 186 34.917 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 APJL_0237 d691d821e2e49f3102044a6de98ad316 186 Gene3D G3DSA:3.40.1740.10 6 174 2.3E-59 T 11-10-2018 APJL_0237 d691d821e2e49f3102044a6de98ad316 186 Pfam PF02622 Uncharacterized ACR, COG1678 14 175 4.4E-45 T 11-10-2018 IPR003774 Protein of unknown function UPF0301 APJL_0237 d691d821e2e49f3102044a6de98ad316 186 SUPERFAMILY SSF143456 2 177 1.11E-58 T 11-10-2018 APJL_0380 d1ff3498a570df79752499c01125f3cd 225 Gene3D G3DSA:3.40.470.10 1 225 1.7E-102 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_0380 d1ff3498a570df79752499c01125f3cd 225 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 1 218 40.665 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_0380 d1ff3498a570df79752499c01125f3cd 225 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 54 63 - T 11-10-2018 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_0380 d1ff3498a570df79752499c01125f3cd 225 Pfam PF03167 Uracil DNA glycosylase superfamily 51 206 1.8E-26 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_0380 d1ff3498a570df79752499c01125f3cd 225 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 2 210 1.2E-88 T 11-10-2018 IPR002043 Uracil-DNA glycosylase family 1 GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_0380 d1ff3498a570df79752499c01125f3cd 225 SMART SM00986 46 207 2.5E-40 T 11-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_0380 d1ff3498a570df79752499c01125f3cd 225 SMART SM00987 46 207 2.5E-40 T 11-10-2018 APJL_0380 d1ff3498a570df79752499c01125f3cd 225 SUPERFAMILY SSF52141 2 219 2.62E-95 T 11-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 APJL_0004 329412678109fa5baf84ebacd8f09640 190 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 178 189 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APJL_0004 329412678109fa5baf84ebacd8f09640 190 Gene3D G3DSA:2.60.40.200 29 190 9.9E-50 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APJL_0004 329412678109fa5baf84ebacd8f09640 190 SUPERFAMILY SSF49329 39 190 9.29E-50 T 11-10-2018 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APJL_0004 329412678109fa5baf84ebacd8f09640 190 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 50 189 1.4E-32 T 11-10-2018 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APJL_0004 329412678109fa5baf84ebacd8f09640 190 ProSitePatterns PS00087 Copper/Zinc superoxide dismutase signature 1. 81 91 - T 11-10-2018 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 Gene3D G3DSA:3.90.550.10 2 225 1.3E-69 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 SUPERFAMILY SSF53448 4 250 1.09E-66 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 SUPERFAMILY SSF51161 218 452 2.01E-54 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 5 453 9.4E-203 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 393 427 2.9E-8 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 350 381 0.0012 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 264 298 4.0E-5 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 Pfam PF12804 MobA-like NTP transferase domain 6 125 1.7E-21 T 11-10-2018 IPR025877 MobA-like NTP transferase APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 401 429 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 Gene3D G3DSA:2.160.10.10 226 454 7.8E-76 T 11-10-2018 APJL_0581 08a0ab2a8ee3a8deda3f1d4c806e4259 454 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 3 450 42.609 T 11-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 APJL_0761 1ff2fa5095600215925bb59f6309e58b 228 Pfam PF04172 LrgB-like family 9 221 1.0E-67 T 11-10-2018 IPR007300 CidB/LrgB family APJL_0762 e2f29adc5f3a8c8b2c22084e63c6167f 270 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 270 44.833 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 APJL_0762 e2f29adc5f3a8c8b2c22084e63c6167f 270 Gene3D G3DSA:3.60.21.10 1 270 1.7E-78 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APJL_0762 e2f29adc5f3a8c8b2c22084e63c6167f 270 PIRSF PIRSF000903 1 270 9.6E-116 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 APJL_0762 e2f29adc5f3a8c8b2c22084e63c6167f 270 SUPERFAMILY SSF56300 1 259 3.14E-56 T 11-10-2018 APJL_0762 e2f29adc5f3a8c8b2c22084e63c6167f 270 Pfam PF00149 Calcineurin-like phosphoesterase 3 136 2.6E-14 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APJL_0762 e2f29adc5f3a8c8b2c22084e63c6167f 270 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 268 1.7E-130 T 11-10-2018 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 APJL_1360 a5ac59357d0a7d7731b9e68f506b2ba6 117 SUPERFAMILY SSF55620 1 115 8.34E-36 T 11-10-2018 APJL_1360 a5ac59357d0a7d7731b9e68f506b2ba6 117 SMART SM00905 5 115 2.4E-43 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APJL_1360 a5ac59357d0a7d7731b9e68f506b2ba6 117 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 115 2.1E-32 T 11-10-2018 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APJL_1360 a5ac59357d0a7d7731b9e68f506b2ba6 117 TIGRFAM TIGR00526 folB_dom: FolB domain 2 115 1.8E-34 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APJL_1360 a5ac59357d0a7d7731b9e68f506b2ba6 117 Pfam PF02152 Dihydroneopterin aldolase 5 113 4.5E-31 T 11-10-2018 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 APJL_1360 a5ac59357d0a7d7731b9e68f506b2ba6 117 Gene3D G3DSA:3.30.1130.10 1 116 5.6E-38 T 11-10-2018 APJL_0076 e8c127ae9cb1043e9c1d336dd9eefcbb 244 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 169 242 4.7E-19 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 APJL_0076 e8c127ae9cb1043e9c1d336dd9eefcbb 244 SUPERFAMILY SSF74653 150 243 2.49E-15 T 11-10-2018 APJL_0076 e8c127ae9cb1043e9c1d336dd9eefcbb 244 PRINTS PR01374 Gram-negative bacterial tonB protein signature 185 203 5.1E-10 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 APJL_0076 e8c127ae9cb1043e9c1d336dd9eefcbb 244 PRINTS PR01374 Gram-negative bacterial tonB protein signature 164 185 5.1E-10 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 APJL_0076 e8c127ae9cb1043e9c1d336dd9eefcbb 244 PRINTS PR01374 Gram-negative bacterial tonB protein signature 63 73 5.1E-10 T 11-10-2018 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 APJL_0076 e8c127ae9cb1043e9c1d336dd9eefcbb 244 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 171 243 1.6E-21 T 11-10-2018 IPR006260 TonB/TolA, C-terminal APJL_0076 e8c127ae9cb1043e9c1d336dd9eefcbb 244 Gene3D G3DSA:3.30.1150.10 125 244 1.5E-20 T 11-10-2018 APJL_0609 17ac28e0afda27084f34a543e3c255e6 239 SUPERFAMILY SSF52540 1 217 2.13E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0609 17ac28e0afda27084f34a543e3c255e6 239 Pfam PF13500 AAA domain 3 215 1.0E-28 T 11-10-2018 APJL_0609 17ac28e0afda27084f34a543e3c255e6 239 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 5 184 4.9E-38 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APJL_0609 17ac28e0afda27084f34a543e3c255e6 239 Gene3D G3DSA:3.40.50.300 3 229 6.5E-51 T 11-10-2018 APJL_0609 17ac28e0afda27084f34a543e3c255e6 239 PIRSF PIRSF006755 1 235 2.0E-65 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APJL_0609 17ac28e0afda27084f34a543e3c255e6 239 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 1 217 25.431 T 11-10-2018 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 APJL_1964 0874971f619c616e1fc1d64253ec7d9a 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 1.0E-44 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 APJL_1964 0874971f619c616e1fc1d64253ec7d9a 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 1.3E-54 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 APJL_1964 0874971f619c616e1fc1d64253ec7d9a 105 Hamap MF_00744 Met repressor [metJ]. 1 105 37.372 T 11-10-2018 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 APJL_1964 0874971f619c616e1fc1d64253ec7d9a 105 Gene3D G3DSA:1.10.140.10 2 105 1.6E-59 T 11-10-2018 IPR023453 Methionine repressor MetJ domain superfamily APJL_1964 0874971f619c616e1fc1d64253ec7d9a 105 SUPERFAMILY SSF47598 3 105 3.56E-56 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 SUPERFAMILY SSF81338 6 252 3.27E-74 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 Pfam PF00230 Major intrinsic protein 5 247 2.1E-63 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 Gene3D G3DSA:1.20.1080.10 1 255 2.7E-96 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 TIGRFAM TIGR00861 MIP: MIP family channel proteins 11 247 2.5E-66 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 ProSitePatterns PS00221 MIP family signature. 64 72 - T 11-10-2018 IPR022357 Major intrinsic protein, conserved site Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 PRINTS PR00783 Major intrinsic protein family signature 83 102 1.4E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 PRINTS PR00783 Major intrinsic protein family signature 46 70 1.4E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 PRINTS PR00783 Major intrinsic protein family signature 230 250 1.4E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 PRINTS PR00783 Major intrinsic protein family signature 7 26 1.4E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 PRINTS PR00783 Major intrinsic protein family signature 147 165 1.4E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_0392 2978dae6ef9cd83bebc48ec8b8c3e1a7 260 PRINTS PR00783 Major intrinsic protein family signature 180 202 1.4E-50 T 11-10-2018 IPR000425 Major intrinsic protein GO:0015267|GO:0016020|GO:0055085 Reactome: R-HSA-432047 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 Gene3D G3DSA:1.10.150.80 297 371 3.0E-19 T 11-10-2018 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 SMART SM00474 7 175 8.0E-40 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 Hamap MF_01899 Ribonuclease D [rnd]. 7 369 42.29 T 11-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 TIGRFAM TIGR01388 rnd: ribonuclease D 9 369 1.1E-124 T 11-10-2018 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 Pfam PF00570 HRDC domain 217 280 2.4E-11 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 SMART SM00341 214 293 0.0029 T 11-10-2018 IPR002121 HRDC domain GO:0003676|GO:0005622 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 SUPERFAMILY SSF47819 202 302 3.27E-27 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 Gene3D G3DSA:3.30.420.10 5 198 4.8E-66 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 Pfam PF01612 3'-5' exonuclease 7 174 6.3E-38 T 11-10-2018 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 SUPERFAMILY SSF53098 6 213 8.28E-67 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 Gene3D G3DSA:1.10.150.80 201 296 5.3E-19 T 11-10-2018 APJL_0611 6f1ed88791ad681bee9843e8d9352a90 371 SUPERFAMILY SSF47819 298 368 8.37E-17 T 11-10-2018 IPR010997 HRDC-like superfamily GO:0000166|GO:0003824|GO:0044237 APJL_0778 52636e3cae4f693796f879063982cb1f 316 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 5 315 7.3E-124 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APJL_0778 52636e3cae4f693796f879063982cb1f 316 SUPERFAMILY SSF53271 69 307 5.93E-64 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_0778 52636e3cae4f693796f879063982cb1f 316 Pfam PF14572 Phosphoribosyl synthetase-associated domain 205 314 7.5E-32 T 11-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APJL_0778 52636e3cae4f693796f879063982cb1f 316 Gene3D G3DSA:3.40.50.2020 148 291 1.6E-134 T 11-10-2018 APJL_0778 52636e3cae4f693796f879063982cb1f 316 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 11-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 APJL_0778 52636e3cae4f693796f879063982cb1f 316 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 4 315 49.545 T 11-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 APJL_0778 52636e3cae4f693796f879063982cb1f 316 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 1.1E-49 T 11-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 APJL_0778 52636e3cae4f693796f879063982cb1f 316 SMART SM01400 4 121 1.1E-77 T 11-10-2018 APJL_0778 52636e3cae4f693796f879063982cb1f 316 Gene3D G3DSA:3.40.50.2020 7 303 1.6E-134 T 11-10-2018 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 Gene3D G3DSA:3.90.190.20 351 500 7.6E-59 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 Gene3D G3DSA:3.40.1390.10 7 111 1.3E-25 T 11-10-2018 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 Pfam PF08245 Mur ligase middle domain 121 322 2.0E-51 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 2 500 35.219 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 SUPERFAMILY SSF53623 112 343 2.35E-76 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 Gene3D G3DSA:3.40.1190.10 112 347 1.5E-84 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 Pfam PF01225 Mur ligase family, catalytic domain 23 109 6.0E-15 T 11-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 SUPERFAMILY SSF53244 344 500 9.81E-50 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 SUPERFAMILY SSF63418 20 110 1.57E-19 T 11-10-2018 IPR035911 MurE/MurF, N-terminal APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 21 500 1.2E-170 T 11-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 APJL_0014 6ac5a8d05937f64917666a7145468e3a 500 Pfam PF02875 Mur ligase family, glutamate ligase domain 344 433 3.1E-21 T 11-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 APJL_0714 2f4825f2fba19234b6777019f4f3e7d4 302 SUPERFAMILY SSF53807 23 287 6.28E-53 T 11-10-2018 APJL_0714 2f4825f2fba19234b6777019f4f3e7d4 302 Pfam PF01497 Periplasmic binding protein 64 278 2.2E-27 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APJL_0714 2f4825f2fba19234b6777019f4f3e7d4 302 Gene3D G3DSA:3.40.50.12260 171 276 2.0E-70 T 11-10-2018 APJL_0714 2f4825f2fba19234b6777019f4f3e7d4 302 Gene3D G3DSA:3.40.50.1980 33 288 2.0E-70 T 11-10-2018 APJL_1604 a880138d51247d2a99638f5efe6802bb 224 Gene3D G3DSA:3.30.1370.60 1 193 5.1E-48 T 11-10-2018 APJL_1604 a880138d51247d2a99638f5efe6802bb 224 SUPERFAMILY SSF89733 1 224 5.89E-62 T 11-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 APJL_1604 a880138d51247d2a99638f5efe6802bb 224 Pfam PF02615 Malate/L-lactate dehydrogenase 1 222 1.5E-65 T 11-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 APJL_1429 699a95369e7b2a4014203c4dcb28073e 150 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 64 141 4.6E-5 T 11-10-2018 IPR018660 C-type lysozyme inhibitor APJL_1429 699a95369e7b2a4014203c4dcb28073e 150 PIRSF PIRSF007352 11 150 2.0E-31 T 11-10-2018 IPR012097 Opacity-associated protein B APJL_0351 3e5230281d21d5ae4b5f9a8a2e515670 175 Gene3D G3DSA:3.40.930.10 2 171 5.6E-40 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_0351 3e5230281d21d5ae4b5f9a8a2e515670 175 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 10 164 1.7E-35 T 11-10-2018 IPR002178 PTS EIIA type-2 domain APJL_0351 3e5230281d21d5ae4b5f9a8a2e515670 175 SUPERFAMILY SSF55804 6 164 4.58E-30 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 Gene3D G3DSA:3.60.20.10 2 415 1.1E-152 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 Pfam PF13522 Glutamine amidotransferase domain 65 209 2.6E-16 T 11-10-2018 APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 Gene3D G3DSA:3.40.50.2020 278 444 1.1E-152 T 11-10-2018 APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 SUPERFAMILY SSF53271 251 486 2.36E-67 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 467 44.626 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 467 7.0E-157 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 PIRSF PIRSF000485 1 484 2.7E-165 T 11-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 Pfam PF00156 Phosphoribosyl transferase domain 295 396 1.3E-7 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APJL_0450 d1686b1beb62be60bd5a9e7513327323 505 SUPERFAMILY SSF56235 2 258 5.06E-74 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APJL_1562 7df05051ed700fec23ad323556f4c942 369 SUPERFAMILY SSF53067 5 343 5.37E-27 T 11-10-2018 APJL_1562 7df05051ed700fec23ad323556f4c942 369 Gene3D G3DSA:3.30.420.40 145 329 1.2E-128 T 11-10-2018 APJL_1562 7df05051ed700fec23ad323556f4c942 369 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 4 369 39.898 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 APJL_1562 7df05051ed700fec23ad323556f4c942 369 Gene3D G3DSA:3.30.420.40 11 364 1.2E-128 T 11-10-2018 APJL_1562 7df05051ed700fec23ad323556f4c942 369 Pfam PF03702 Anhydro-N-acetylmuramic acid kinase 5 369 9.1E-161 T 11-10-2018 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 MetaCyc: PWY-7883 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 PRINTS PR01022 Outer membrane protein A signature 301 320 5.0E-14 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 PRINTS PR01022 Outer membrane protein A signature 233 248 5.0E-14 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 PRINTS PR01022 Outer membrane protein A signature 124 140 5.0E-14 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 PRINTS PR01022 Outer membrane protein A signature 335 348 5.0E-14 T 11-10-2018 IPR002368 Outer membrane protein, OmpA GO:0005198|GO:0009279|GO:0016021 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 SUPERFAMILY SSF56925 20 225 2.43E-33 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 Gene3D G3DSA:2.40.160.20 20 221 6.6E-46 T 11-10-2018 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 Pfam PF01389 OmpA-like transmembrane domain 21 223 1.2E-64 T 11-10-2018 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 Gene3D G3DSA:3.30.1330.60 223 364 1.5E-46 T 11-10-2018 IPR036737 OmpA-like domain superfamily APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 PRINTS PR01021 OMPA domain signature 292 308 1.4E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 PRINTS PR01021 OMPA domain signature 277 292 1.4E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 PRINTS PR01021 OMPA domain signature 245 267 1.4E-17 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 Pfam PF00691 OmpA family 244 336 5.7E-20 T 11-10-2018 IPR006665 OmpA-like domain APJL_1894 23dc6cfb92c957184c6adbc711aa7467 364 SUPERFAMILY SSF103088 233 356 3.14E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily APJL_1618 2bf8c52ab4fb4740b977147f3a7f63a6 216 SUPERFAMILY SSF52540 2 213 1.01E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1618 2bf8c52ab4fb4740b977147f3a7f63a6 216 SMART SM00382 30 204 4.6E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1618 2bf8c52ab4fb4740b977147f3a7f63a6 216 Pfam PF00005 ABC transporter 21 149 1.8E-18 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1618 2bf8c52ab4fb4740b977147f3a7f63a6 216 ProSitePatterns PS00211 ABC transporters family signature. 123 137 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1618 2bf8c52ab4fb4740b977147f3a7f63a6 216 Gene3D G3DSA:3.40.50.300 1 214 5.4E-42 T 11-10-2018 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 250 8.6E-104 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 Gene3D G3DSA:3.90.230.10 4 263 3.9E-110 T 11-10-2018 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 Pfam PF00557 Metallopeptidase family M24 13 243 1.7E-52 T 11-10-2018 IPR000994 Peptidase M24 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 PRINTS PR00599 Methionine aminopeptidase-1 signature 70 83 5.3E-24 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 PRINTS PR00599 Methionine aminopeptidase-1 signature 194 206 5.3E-24 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 PRINTS PR00599 Methionine aminopeptidase-1 signature 163 175 5.3E-24 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 PRINTS PR00599 Methionine aminopeptidase-1 signature 93 109 5.3E-24 T 11-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 169 187 - T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 Hamap MF_01974 Methionine aminopeptidase [map]. 4 252 41.837 T 11-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 APJL_2080 afdb41649625f869906a51c0f52ffe46 268 SUPERFAMILY SSF55920 7 256 4.71E-89 T 11-10-2018 IPR036005 Creatinase/aminopeptidase-like APJL_0982 cc18d2ddafe316253a2386778619f0ef 455 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 455 3.8E-211 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 APJL_0982 cc18d2ddafe316253a2386778619f0ef 455 SUPERFAMILY SSF102114 4 441 1.44E-144 T 11-10-2018 APJL_0982 cc18d2ddafe316253a2386778619f0ef 455 Gene3D G3DSA:3.80.30.20 1 361 3.2E-136 T 11-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe APJL_0982 cc18d2ddafe316253a2386778619f0ef 455 SMART SM00729 50 273 2.9E-51 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APJL_0982 cc18d2ddafe316253a2386778619f0ef 455 PIRSF PIRSF000167 1 452 6.4E-168 T 11-10-2018 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.98.3|MetaCyc: PWY-5531 APJL_0982 cc18d2ddafe316253a2386778619f0ef 455 Pfam PF06969 HemN C-terminal domain 361 429 5.3E-11 T 11-10-2018 IPR010723 HemN, C-terminal APJL_0982 cc18d2ddafe316253a2386778619f0ef 455 Pfam PF04055 Radical SAM superfamily 55 226 9.5E-21 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_0982 cc18d2ddafe316253a2386778619f0ef 455 Gene3D G3DSA:1.10.10.920 362 455 2.3E-33 T 11-10-2018 APJL_1643 177bf1a04666ffa9ae5acef3179679ff 97 SUPERFAMILY SSF54909 1 93 1.73E-21 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APJL_1643 177bf1a04666ffa9ae5acef3179679ff 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 74 7.4E-12 T 11-10-2018 IPR007138 Antibiotic biosynthesis monooxygenase domain APJL_1643 177bf1a04666ffa9ae5acef3179679ff 97 Gene3D G3DSA:3.30.70.100 1 93 7.8E-23 T 11-10-2018 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 317 51.245 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 89 100 5.9E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 154 167 5.9E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 135 151 5.9E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 170 183 5.9E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 114 132 5.9E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 198 207 5.9E-50 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 149 5.7E-65 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 SUPERFAMILY SSF52096 5 316 1.59E-103 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 1 317 1.5E-174 T 11-10-2018 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722 APJL_1511 b92a98a234acecbb4d6fc18d7c33c6ab 317 Gene3D G3DSA:3.90.226.10 1 317 8.7E-123 T 11-10-2018 APJL_0524 0890e6cfe448c9f705a98a669c4f7c31 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 7.4E-18 T 11-10-2018 IPR010035 ThiS, thiamine-biosynthesis APJL_0524 0890e6cfe448c9f705a98a669c4f7c31 66 Gene3D G3DSA:3.10.20.30 1 66 8.3E-21 T 11-10-2018 IPR012675 Beta-grasp domain superfamily APJL_0524 0890e6cfe448c9f705a98a669c4f7c31 66 SUPERFAMILY SSF54285 1 66 1.57E-15 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APJL_0524 0890e6cfe448c9f705a98a669c4f7c31 66 Pfam PF02597 ThiS family 10 66 1.8E-11 T 11-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 APJL_1567 d21fbf42c725c0907b4afd4017f5595d 486 PIRSF PIRSF004919 15 486 5.5E-138 T 11-10-2018 IPR025502 TldD APJL_1567 d21fbf42c725c0907b4afd4017f5595d 486 Gene3D G3DSA:3.30.2290.10 12 215 3.1E-15 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal APJL_1567 d21fbf42c725c0907b4afd4017f5595d 486 SUPERFAMILY SSF111283 18 485 7.72E-126 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 APJL_1567 d21fbf42c725c0907b4afd4017f5595d 486 Pfam PF01523 Putative modulator of DNA gyrase 34 337 5.1E-64 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APJL_1559 a91e1450693ace6cf398414cd9e95ab6 440 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 8 372 4.7E-152 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 APJL_1559 a91e1450693ace6cf398414cd9e95ab6 440 PIRSF PIRSF004539 3 440 8.7E-183 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 APJL_1559 a91e1450693ace6cf398414cd9e95ab6 440 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 8 440 2.2E-195 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 APJL_0050 2861863a573a64dd704636fc3df07645 172 Gene3D G3DSA:2.40.160.20 22 172 8.6E-6 T 11-10-2018 APJL_0050 2861863a573a64dd704636fc3df07645 172 Pfam PF13505 Outer membrane protein beta-barrel domain 6 172 3.9E-22 T 11-10-2018 IPR027385 Outer membrane protein beta-barrel APJL_0050 2861863a573a64dd704636fc3df07645 172 SUPERFAMILY SSF56925 28 172 3.4E-17 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_1071 c22c2298a5187845d695120fab910953 621 Gene3D G3DSA:3.40.50.720 410 572 1.3E-33 T 11-10-2018 APJL_1071 c22c2298a5187845d695120fab910953 621 Pfam PF02254 TrkA-N domain 414 526 3.1E-22 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APJL_1071 c22c2298a5187845d695120fab910953 621 Gene3D G3DSA:1.20.1530.20 10 396 5.8E-85 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APJL_1071 c22c2298a5187845d695120fab910953 621 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 21 293 5.0E-88 T 11-10-2018 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 APJL_1071 c22c2298a5187845d695120fab910953 621 SUPERFAMILY SSF51735 412 541 6.57E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1071 c22c2298a5187845d695120fab910953 621 Pfam PF00999 Sodium/hydrogen exchanger family 19 382 6.5E-78 T 11-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 APJL_0986 621e876dd74a0b49ee43b0b72f8ecb55 405 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 6 403 2.6E-157 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 APJL_0986 621e876dd74a0b49ee43b0b72f8ecb55 405 Pfam PF03616 Sodium/glutamate symporter 5 373 2.2E-144 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 APJL_0986 621e876dd74a0b49ee43b0b72f8ecb55 405 Hamap MF_02062 Sodium/glutamate symporter [gltS]. 4 404 24.425 T 11-10-2018 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 APJL_0704 93cd2cde7f4434e80e19eb1bddcbdfce 962 SUPERFAMILY SSF53335 392 756 1.02E-47 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0704 93cd2cde7f4434e80e19eb1bddcbdfce 962 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 425 431 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_0704 93cd2cde7f4434e80e19eb1bddcbdfce 962 Pfam PF01555 DNA methylase 422 736 1.5E-29 T 11-10-2018 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 APJL_0704 93cd2cde7f4434e80e19eb1bddcbdfce 962 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 726 746 8.7E-8 T 11-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APJL_0704 93cd2cde7f4434e80e19eb1bddcbdfce 962 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 697 715 8.7E-8 T 11-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APJL_0704 93cd2cde7f4434e80e19eb1bddcbdfce 962 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 421 435 8.7E-8 T 11-10-2018 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 APJL_1916 76e7a9f0091045a674bda5d719ad8e83 222 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 28 184 1.7E-38 T 11-10-2018 IPR003709 Peptidase M15B GO:0006508|GO:0008233 APJL_1916 76e7a9f0091045a674bda5d719ad8e83 222 SUPERFAMILY SSF55166 20 185 1.33E-20 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 APJL_1916 76e7a9f0091045a674bda5d719ad8e83 222 Gene3D G3DSA:3.30.1380.10 1 201 2.8E-32 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 APJL_1772 01a8a18028d98ab28a5883425d596115 173 SUPERFAMILY SSF56235 1 173 6.31E-55 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APJL_1772 01a8a18028d98ab28a5883425d596115 173 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 173 40.409 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 APJL_1772 01a8a18028d98ab28a5883425d596115 173 Pfam PF00227 Proteasome subunit 2 171 3.8E-23 T 11-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 APJL_1772 01a8a18028d98ab28a5883425d596115 173 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 173 9.4E-80 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 APJL_1772 01a8a18028d98ab28a5883425d596115 173 PIRSF PIRSF039093 1 173 1.9E-78 T 11-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 APJL_1772 01a8a18028d98ab28a5883425d596115 173 Gene3D G3DSA:3.60.20.10 1 173 3.3E-64 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APJL_0754 fae32ee4176f4dce61c0ae6b05f8ee67 261 Gene3D G3DSA:3.40.50.1820 7 260 8.4E-59 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0754 fae32ee4176f4dce61c0ae6b05f8ee67 261 Pfam PF12697 Alpha/beta hydrolase family 24 253 1.5E-18 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APJL_0754 fae32ee4176f4dce61c0ae6b05f8ee67 261 SUPERFAMILY SSF53474 6 259 6.54E-46 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1853 b046cc74ec92cd53a173e849a5c13a2f 208 SUPERFAMILY SSF52540 1 206 1.45E-54 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1853 b046cc74ec92cd53a173e849a5c13a2f 208 Pfam PF02223 Thymidylate kinase 8 196 6.1E-60 T 11-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 APJL_1853 b046cc74ec92cd53a173e849a5c13a2f 208 Hamap MF_00165 Thymidylate kinase [tmk]. 4 204 28.222 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 APJL_1853 b046cc74ec92cd53a173e849a5c13a2f 208 Gene3D G3DSA:3.40.50.300 1 206 1.4E-65 T 11-10-2018 APJL_1853 b046cc74ec92cd53a173e849a5c13a2f 208 ProSitePatterns PS01331 Thymidylate kinase signature. 93 105 - T 11-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 APJL_1853 b046cc74ec92cd53a173e849a5c13a2f 208 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 196 1.2E-69 T 11-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 APJL_1805 93405f44c6e7e1f905093bcc9e58ae3f 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 6.1E-60 T 11-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 APJL_1805 93405f44c6e7e1f905093bcc9e58ae3f 123 SMART SM01374 1 123 2.5E-86 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APJL_1805 93405f44c6e7e1f905093bcc9e58ae3f 123 Gene3D G3DSA:2.40.150.20 1 123 5.3E-57 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1805 93405f44c6e7e1f905093bcc9e58ae3f 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1805 93405f44c6e7e1f905093bcc9e58ae3f 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 4.0E-55 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APJL_1805 93405f44c6e7e1f905093bcc9e58ae3f 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 27.503 T 11-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 APJL_1805 93405f44c6e7e1f905093bcc9e58ae3f 123 SUPERFAMILY SSF50193 2 122 2.62E-51 T 11-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1862 f23a07eed88da2edcc9cc3d0594daaae 93 SMART SM01409 8 61 2.5E-11 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 APJL_1862 f23a07eed88da2edcc9cc3d0594daaae 93 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 15.821 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1862 f23a07eed88da2edcc9cc3d0594daaae 93 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 60 1.3E-28 T 11-10-2018 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 APJL_1862 f23a07eed88da2edcc9cc3d0594daaae 93 Gene3D G3DSA:3.90.940.10 1 91 1.9E-23 T 11-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 APJL_1862 f23a07eed88da2edcc9cc3d0594daaae 93 SUPERFAMILY SSF63562 1 80 3.49E-22 T 11-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 APJL_1862 f23a07eed88da2edcc9cc3d0594daaae 93 Pfam PF01192 RNA polymerase Rpb6 11 59 4.8E-14 T 11-10-2018 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 APJL_0206 8ff59425b27c830b0a3d68d2a3257fb2 345 SMART SM00967 110 185 1.2E-11 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 APJL_0206 8ff59425b27c830b0a3d68d2a3257fb2 345 PIRSF PIRSF006280 1 345 1.2E-122 T 11-10-2018 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted GO:0008168 APJL_0206 8ff59425b27c830b0a3d68d2a3257fb2 345 Pfam PF00588 SpoU rRNA Methylase family 200 336 4.9E-14 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APJL_0206 8ff59425b27c830b0a3d68d2a3257fb2 345 SUPERFAMILY SSF55315 100 180 1.14E-10 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like APJL_0206 8ff59425b27c830b0a3d68d2a3257fb2 345 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 111 181 1.2E-12 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 APJL_0206 8ff59425b27c830b0a3d68d2a3257fb2 345 SUPERFAMILY SSF75217 185 342 2.49E-20 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APJL_0206 8ff59425b27c830b0a3d68d2a3257fb2 345 Gene3D G3DSA:3.40.1280.10 186 344 3.8E-21 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APJL_0030 d3587fd6146d45590d1f47cb0e80db89 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 432 1.5E-63 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APJL_0030 d3587fd6146d45590d1f47cb0e80db89 524 Gene3D G3DSA:3.40.190.10 70 269 3.5E-91 T 11-10-2018 APJL_0030 d3587fd6146d45590d1f47cb0e80db89 524 Gene3D G3DSA:3.10.105.10 270 492 3.5E-91 T 11-10-2018 APJL_0030 d3587fd6146d45590d1f47cb0e80db89 524 PIRSF PIRSF002741 1 523 9.4E-68 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_0030 d3587fd6146d45590d1f47cb0e80db89 524 SUPERFAMILY SSF53850 41 516 1.79E-97 T 11-10-2018 APJL_0956 cf7ab83536fb4b6bc7e4c6c96d258cc4 89 Gene3D G3DSA:3.40.630.30 1 89 1.2E-19 T 11-10-2018 APJL_0956 cf7ab83536fb4b6bc7e4c6c96d258cc4 89 Pfam PF14542 GCN5-related N-acetyl-transferase 11 84 7.9E-20 T 11-10-2018 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase APJL_0956 cf7ab83536fb4b6bc7e4c6c96d258cc4 89 SUPERFAMILY SSF55729 4 86 1.92E-17 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_0123 23462a8f77751206f94fe574387730f1 184 Gene3D G3DSA:3.30.1380.10 67 184 3.9E-13 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 APJL_0123 23462a8f77751206f94fe574387730f1 184 Pfam PF05951 Bacterial protein of unknown function (DUF882) 36 182 3.1E-50 T 11-10-2018 IPR010275 Protein of unknown function DUF882 APJL_0123 23462a8f77751206f94fe574387730f1 184 SUPERFAMILY SSF55166 67 183 1.23E-31 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 APJL_1687 018bf96e32f58eba3306d32d876dcd17 205 SUPERFAMILY SSF53335 4 203 1.99E-41 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1687 018bf96e32f58eba3306d32d876dcd17 205 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 13 200 27.801 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APJL_1687 018bf96e32f58eba3306d32d876dcd17 205 PIRSF PIRSF003078 1 205 6.6E-65 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APJL_1687 018bf96e32f58eba3306d32d876dcd17 205 Gene3D G3DSA:3.40.50.150 1 204 4.1E-67 T 11-10-2018 APJL_1687 018bf96e32f58eba3306d32d876dcd17 205 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 27 203 6.0E-55 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APJL_1687 018bf96e32f58eba3306d32d876dcd17 205 Pfam PF02527 rRNA small subunit methyltransferase G 20 199 6.2E-61 T 11-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 PRINTS PR00799 Aspartate aminotransferase signature 275 300 7.0E-36 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 PRINTS PR00799 Aspartate aminotransferase signature 343 361 7.0E-36 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 PRINTS PR00799 Aspartate aminotransferase signature 208 220 7.0E-36 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 PRINTS PR00799 Aspartate aminotransferase signature 177 196 7.0E-36 T 11-10-2018 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 Gene3D G3DSA:3.90.1150.10 7 394 3.4E-159 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 Gene3D G3DSA:3.40.640.10 62 302 3.4E-159 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 245 258 - T 11-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 Pfam PF00155 Aminotransferase class I and II 30 394 1.1E-84 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APJL_0652 9484cb8bb45ba636d59f8bfffa7e2fff 398 SUPERFAMILY SSF53383 1 398 3.84E-118 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_1227 5fb557954a1610a73fa58eef521ed8b3 187 Gene3D G3DSA:2.30.110.10 1 187 5.8E-41 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APJL_1227 5fb557954a1610a73fa58eef521ed8b3 187 SMART SM00903 13 154 1.6E-9 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APJL_1227 5fb557954a1610a73fa58eef521ed8b3 187 Pfam PF01613 Flavin reductase like domain 19 150 3.2E-15 T 11-10-2018 IPR002563 Flavin reductase like domain GO:0010181 APJL_1227 5fb557954a1610a73fa58eef521ed8b3 187 SUPERFAMILY SSF50475 8 183 4.37E-33 T 11-10-2018 APJL_0157 e4819f9b9240494e57e7a2127bd7cfdf 343 Pfam PF02424 ApbE family 33 318 3.0E-82 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 APJL_0157 e4819f9b9240494e57e7a2127bd7cfdf 343 PIRSF PIRSF006268 1 342 1.8E-86 T 11-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 APJL_0157 e4819f9b9240494e57e7a2127bd7cfdf 343 SUPERFAMILY SSF143631 25 339 6.8E-94 T 11-10-2018 IPR003374 ApbE-like superfamily APJL_0157 e4819f9b9240494e57e7a2127bd7cfdf 343 Gene3D G3DSA:3.10.520.20 16 343 5.9E-107 T 11-10-2018 APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 Pfam PF13721 SecD export protein N-terminal TM region 1 92 2.3E-26 T 11-10-2018 IPR027398 SecD export protein N-terminal TM domain APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 Gene3D G3DSA:3.30.70.3400 211 426 2.5E-48 T 11-10-2018 APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 Gene3D G3DSA:1.20.1640.10 440 596 4.3E-13 T 11-10-2018 APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 Gene3D G3DSA:3.30.1360.200 267 420 2.5E-48 T 11-10-2018 APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 PRINTS PR00702 Acriflavin resistance protein family signature 491 515 1.7E-6 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 PRINTS PR00702 Acriflavin resistance protein family signature 566 589 1.7E-6 T 11-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 SUPERFAMILY SSF82866 399 594 1.44E-43 T 11-10-2018 APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 Pfam PF07549 SecD/SecF GG Motif 105 129 7.6E-5 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 113 589 1.4E-143 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 Pfam PF02355 Protein export membrane protein 424 583 6.0E-16 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 334 582 1.3E-79 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APJL_1083 6b90c5d16ca009ff1227d6c0a53cd886 604 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 604 45.944 T 11-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 APJL_0747 42438487cd3a8df006f20a898f98f7b0 481 Pfam PF00245 Alkaline phosphatase 32 434 1.4E-45 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 APJL_0747 42438487cd3a8df006f20a898f98f7b0 481 SUPERFAMILY SSF53649 15 478 3.43E-87 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APJL_0747 42438487cd3a8df006f20a898f98f7b0 481 SMART SM00098 33 479 4.5E-11 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 APJL_0747 42438487cd3a8df006f20a898f98f7b0 481 PRINTS PR00113 Alkaline phosphatase signature 311 340 9.2E-19 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 APJL_0747 42438487cd3a8df006f20a898f98f7b0 481 PRINTS PR00113 Alkaline phosphatase signature 32 52 9.2E-19 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 APJL_0747 42438487cd3a8df006f20a898f98f7b0 481 PRINTS PR00113 Alkaline phosphatase signature 212 222 9.2E-19 T 11-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 APJL_0938 0caed7a4a284a0da0c27e3bc035ea818 173 Gene3D G3DSA:1.10.287.110 3 79 4.1E-18 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APJL_0938 0caed7a4a284a0da0c27e3bc035ea818 173 SUPERFAMILY SSF46565 3 70 1.57E-13 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APJL_0938 0caed7a4a284a0da0c27e3bc035ea818 173 Gene3D G3DSA:1.20.1280.20 81 172 1.3E-22 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_0938 0caed7a4a284a0da0c27e3bc035ea818 173 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 2 171 23.136 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_0938 0caed7a4a284a0da0c27e3bc035ea818 173 Pfam PF07743 HSCB C-terminal oligomerisation domain 90 163 5.3E-19 T 11-10-2018 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_0938 0caed7a4a284a0da0c27e3bc035ea818 173 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 14 170 5.3E-46 T 11-10-2018 IPR004640 Co-chaperone Hsc20 GO:0001671|GO:0051087|GO:0097428 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_0938 0caed7a4a284a0da0c27e3bc035ea818 173 SUPERFAMILY SSF47144 84 172 1.29E-24 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_0938 0caed7a4a284a0da0c27e3bc035ea818 173 SMART SM00271 2 67 4.3E-5 T 11-10-2018 IPR001623 DnaJ domain APJL_1239 f336f6f1515733031e266a1c5e1d6f4f 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 1.5E-37 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 APJL_1239 f336f6f1515733031e266a1c5e1d6f4f 72 SMART SM00316 4 72 5.6E-5 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_1239 f336f6f1515733031e266a1c5e1d6f4f 72 Gene3D G3DSA:2.40.50.140 1 72 8.8E-37 T 11-10-2018 APJL_1239 f336f6f1515733031e266a1c5e1d6f4f 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.635 T 11-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 APJL_1239 f336f6f1515733031e266a1c5e1d6f4f 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 5.4E-27 T 11-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 APJL_1239 f336f6f1515733031e266a1c5e1d6f4f 72 SUPERFAMILY SSF50249 1 70 2.94E-28 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0918 9c4bdac3c0dc32257e16d0457d780cb1 191 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 139 167 - T 11-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 APJL_0918 9c4bdac3c0dc32257e16d0457d780cb1 191 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 131 165 3.4E-10 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0918 9c4bdac3c0dc32257e16d0457d780cb1 191 SUPERFAMILY SSF51161 53 185 2.63E-43 T 11-10-2018 IPR011004 Trimeric LpxA-like superfamily APJL_0918 9c4bdac3c0dc32257e16d0457d780cb1 191 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 77 106 0.016 T 11-10-2018 IPR001451 Hexapeptide repeat APJL_0918 9c4bdac3c0dc32257e16d0457d780cb1 191 Gene3D G3DSA:2.160.10.10 9 186 1.3E-51 T 11-10-2018 APJL_1264 a38bb97509a953efb96e51dc90651b67 424 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 5 414 2.5E-65 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APJL_1264 a38bb97509a953efb96e51dc90651b67 424 Pfam PF03600 Citrate transporter 15 343 1.1E-44 T 11-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 Gene3D G3DSA:2.30.42.10 238 322 1.7E-11 T 11-10-2018 APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 243 322 1.5E-13 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 SMART SM00228 248 325 1.1E-8 T 11-10-2018 IPR001478 PDZ domain GO:0005515 APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 SMART SM00245 327 529 1.4E-66 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 196 549 8.5E-115 T 11-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 533 664 2.4E-36 T 11-10-2018 IPR020992 Tail specific protease, C-terminal APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 Gene3D G3DSA:3.90.226.10 324 546 2.8E-55 T 11-10-2018 APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 SUPERFAMILY SSF52096 172 535 7.79E-68 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 SUPERFAMILY SSF50156 218 351 1.1E-16 T 11-10-2018 IPR036034 PDZ superfamily GO:0005515 APJL_0121 1873b7401eca278329b3dfd6a795fe8b 670 Pfam PF03572 Peptidase family S41 357 527 9.9E-52 T 11-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 APJL_1068 ed380b427bff79003db2a09831cd3d77 144 Gene3D G3DSA:1.10.8.640 23 108 2.9E-31 T 11-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily APJL_1068 ed380b427bff79003db2a09831cd3d77 144 TIGRFAM TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF 8 129 6.8E-55 T 11-10-2018 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF APJL_1068 ed380b427bff79003db2a09831cd3d77 144 Pfam PF03918 Cytochrome C biogenesis protein 13 139 2.9E-42 T 11-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family APJL_1433 edda382c0694dce792e20460463759af 780 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 46 120 2.2E-7 T 11-10-2018 IPR029464 Type I restriction enzyme R protein, N-terminal domain APJL_1433 edda382c0694dce792e20460463759af 780 Pfam PF00271 Helicase conserved C-terminal domain 407 525 3.7E-7 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1433 edda382c0694dce792e20460463759af 780 SMART SM00487 163 357 2.8E-19 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_1433 edda382c0694dce792e20460463759af 780 Gene3D G3DSA:3.40.50.300 340 570 4.3E-52 T 11-10-2018 APJL_1433 edda382c0694dce792e20460463759af 780 Pfam PF08463 EcoEI R protein C-terminal 671 778 3.3E-15 T 11-10-2018 IPR013670 EcoEI R protein C-terminal domain GO:0003677|GO:0003824|GO:0006304 APJL_1433 edda382c0694dce792e20460463759af 780 Pfam PF04851 Type III restriction enzyme, res subunit 165 322 1.4E-39 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APJL_1433 edda382c0694dce792e20460463759af 780 SUPERFAMILY SSF52540 179 532 8.91E-35 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1433 edda382c0694dce792e20460463759af 780 Gene3D G3DSA:3.40.50.300 151 339 1.1E-69 T 11-10-2018 APJL_1433 edda382c0694dce792e20460463759af 780 Gene3D G3DSA:3.90.1570.30 2 150 4.7E-47 T 11-10-2018 APJL_1719 6561dd47abce423b7718d42ad2b2618f 216 Hamap MF_00987 L-fuculose phosphate aldolase [fucA]. 1 215 55.912 T 11-10-2018 IPR004782 L-fucose phosphate aldolase GO:0006004|GO:0008270|GO:0008738 KEGG: 00051+4.1.2.17|MetaCyc: PWY-5197 APJL_1719 6561dd47abce423b7718d42ad2b2618f 216 SMART SM01007 8 182 3.6E-65 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APJL_1719 6561dd47abce423b7718d42ad2b2618f 216 SUPERFAMILY SSF53639 1 211 2.75E-69 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APJL_1719 6561dd47abce423b7718d42ad2b2618f 216 Gene3D G3DSA:3.40.225.10 1 215 1.2E-78 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APJL_1719 6561dd47abce423b7718d42ad2b2618f 216 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 182 1.4E-46 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APJL_0739 16e585b0a0da83590b7be848d5ac4e3a 398 Pfam PF14559 Tetratricopeptide repeat 198 254 2.4E-6 T 11-10-2018 APJL_0739 16e585b0a0da83590b7be848d5ac4e3a 398 SMART SM00028 149 182 19.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_0739 16e585b0a0da83590b7be848d5ac4e3a 398 SMART SM00028 77 109 160.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_0739 16e585b0a0da83590b7be848d5ac4e3a 398 SMART SM00028 221 254 0.0021 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_0739 16e585b0a0da83590b7be848d5ac4e3a 398 Gene3D G3DSA:1.25.40.10 197 270 3.7E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0739 16e585b0a0da83590b7be848d5ac4e3a 398 SUPERFAMILY SSF48452 39 255 6.5E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0739 16e585b0a0da83590b7be848d5ac4e3a 398 Gene3D G3DSA:1.25.40.10 39 196 1.8E-10 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0739 16e585b0a0da83590b7be848d5ac4e3a 398 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 394 33.697 T 11-10-2018 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 APJL_1871 28eda40ccfeedfc089fdeee7b97576bb 197 Hamap MF_01207 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ [msrQ]. 1 197 19.255 T 11-10-2018 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 APJL_1871 28eda40ccfeedfc089fdeee7b97576bb 197 Pfam PF01794 Ferric reductase like transmembrane component 45 157 1.4E-15 T 11-10-2018 IPR013130 Ferric reductase transmembrane component-like domain APJL_0175 79997f2014405c45270cc0dfd56692f7 321 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 21 316 2.7E-111 T 11-10-2018 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter GO:0015888|GO:0030975 APJL_0175 79997f2014405c45270cc0dfd56692f7 321 Gene3D G3DSA:3.40.190.10 25 294 1.5E-89 T 11-10-2018 APJL_0175 79997f2014405c45270cc0dfd56692f7 321 Pfam PF13531 Bacterial extracellular solute-binding protein 65 272 1.3E-18 T 11-10-2018 APJL_0175 79997f2014405c45270cc0dfd56692f7 321 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 12 318 5.5E-128 T 11-10-2018 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria GO:0015888|GO:0030288|GO:0030975 APJL_0175 79997f2014405c45270cc0dfd56692f7 321 SUPERFAMILY SSF53850 23 320 6.99E-55 T 11-10-2018 APJL_0175 79997f2014405c45270cc0dfd56692f7 321 Gene3D G3DSA:3.40.190.10 121 320 1.5E-89 T 11-10-2018 APJL_1242 1ed0b1b549804d327096f33fc23ee0bb 163 SUPERFAMILY SSF89963 2 88 4.84E-30 T 11-10-2018 IPR036183 YajQ-like superfamily APJL_1242 1ed0b1b549804d327096f33fc23ee0bb 163 Gene3D G3DSA:3.30.70.860 97 163 4.0E-33 T 11-10-2018 IPR035571 UPF0234-like, C-terminal APJL_1242 1ed0b1b549804d327096f33fc23ee0bb 163 Gene3D G3DSA:3.30.70.990 9 96 1.5E-34 T 11-10-2018 IPR035570 UPF0234, N-terminal APJL_1242 1ed0b1b549804d327096f33fc23ee0bb 163 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 163 30.068 T 11-10-2018 IPR007551 Protein of unknown function DUF520 APJL_1242 1ed0b1b549804d327096f33fc23ee0bb 163 SUPERFAMILY SSF89963 92 163 3.92E-30 T 11-10-2018 IPR036183 YajQ-like superfamily APJL_1242 1ed0b1b549804d327096f33fc23ee0bb 163 Pfam PF04461 Protein of unknown function (DUF520) 2 162 1.0E-65 T 11-10-2018 IPR007551 Protein of unknown function DUF520 APJL_1302 507e85608fc5d6b726af8e4d1c5114d8 212 Gene3D G3DSA:3.10.450.710 26 207 1.4E-41 T 11-10-2018 APJL_1302 507e85608fc5d6b726af8e4d1c5114d8 212 PIRSF PIRSF004649 1 212 3.3E-56 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC APJL_1302 507e85608fc5d6b726af8e4d1c5114d8 212 Pfam PF05494 MlaC protein 35 200 7.2E-52 T 11-10-2018 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC APJL_1833 40b99100aab2b1b2eeb6a2e3200fa4db 199 Pfam PF02613 Nitrate reductase delta subunit 53 171 2.7E-25 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone APJL_1833 40b99100aab2b1b2eeb6a2e3200fa4db 199 Gene3D G3DSA:1.20.120.1820 4 124 5.2E-32 T 11-10-2018 APJL_1833 40b99100aab2b1b2eeb6a2e3200fa4db 199 Hamap MF_01150 Chaperone protein TorD [torD]. 4 198 29.35 T 11-10-2018 IPR023069 Chaperone TorD APJL_1833 40b99100aab2b1b2eeb6a2e3200fa4db 199 SUPERFAMILY SSF89155 10 198 4.71E-42 T 11-10-2018 IPR036411 TorD-like superfamily APJL_1833 40b99100aab2b1b2eeb6a2e3200fa4db 199 Gene3D G3DSA:1.20.1280.20 127 199 9.4E-16 T 11-10-2018 IPR036386 HscB, C-terminal domain superfamily GO:0051259 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 APJL_0078 1631e620ffd54216fb76e23486da53c3 147 Pfam PF01618 MotA/TolQ/ExbB proton channel family 50 138 9.3E-27 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APJL_0078 1631e620ffd54216fb76e23486da53c3 147 TIGRFAM TIGR02805 exbB2: tonB-system energizer ExbB 3 140 1.5E-58 T 11-10-2018 IPR014172 TonB-system energizer ExbB type-2 GO:0016020|GO:0055085 APJL_1027 a6687ab09f70889fa7da4a66daf29c16 237 SUPERFAMILY SSF69618 2 232 4.97E-37 T 11-10-2018 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1027 a6687ab09f70889fa7da4a66daf29c16 237 Gene3D G3DSA:3.40.50.10090 17 145 2.6E-48 T 11-10-2018 APJL_1027 a6687ab09f70889fa7da4a66daf29c16 237 Pfam PF02602 Uroporphyrinogen-III synthase HemD 4 226 1.9E-27 T 11-10-2018 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 APJL_1027 a6687ab09f70889fa7da4a66daf29c16 237 Gene3D G3DSA:3.40.50.10090 2 221 2.6E-48 T 11-10-2018 APJL_0999 2bcb5a76ba966e49d3832824a564ea82 346 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 103 327 2.3E-9 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APJL_0999 2bcb5a76ba966e49d3832824a564ea82 346 Gene3D G3DSA:3.40.50.2000 186 341 1.5E-11 T 11-10-2018 APJL_0999 2bcb5a76ba966e49d3832824a564ea82 346 SUPERFAMILY SSF53756 36 336 5.18E-53 T 11-10-2018 APJL_0999 2bcb5a76ba966e49d3832824a564ea82 346 Gene3D G3DSA:3.40.50.2000 29 182 5.7E-19 T 11-10-2018 APJL_1755 9208899790861bea21c37bb67e52a617 122 SUPERFAMILY SSF48300 4 58 4.58E-15 T 11-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1755 9208899790861bea21c37bb67e52a617 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 1.3E-30 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1755 9208899790861bea21c37bb67e52a617 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 7.8E-47 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1755 9208899790861bea21c37bb67e52a617 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 3.4E-15 T 11-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1755 9208899790861bea21c37bb67e52a617 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 122 25.559 T 11-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1755 9208899790861bea21c37bb67e52a617 122 Gene3D G3DSA:3.30.1390.10 52 122 9.1E-32 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APJL_1755 9208899790861bea21c37bb67e52a617 122 Gene3D G3DSA:1.20.5.710 2 51 1.6E-21 T 11-10-2018 APJL_1755 9208899790861bea21c37bb67e52a617 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 101 5.0E-16 T 11-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1755 9208899790861bea21c37bb67e52a617 122 SUPERFAMILY SSF54736 51 122 5.58E-25 T 11-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Gene3D G3DSA:1.10.1420.10 267 558 1.1E-101 T 11-10-2018 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 SUPERFAMILY SSF53150 115 267 1.1E-39 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Gene3D G3DSA:3.30.420.110 128 263 1.9E-34 T 11-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Gene3D G3DSA:3.40.50.300 567 861 3.6E-100 T 11-10-2018 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 SUPERFAMILY SSF55271 3 114 6.54E-43 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 SMART SM00533 284 590 2.7E-104 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 687 703 - T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 SUPERFAMILY SSF52540 566 797 7.94E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Pfam PF05192 MutS domain III 270 558 3.8E-40 T 11-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 8 861 0.0 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Pfam PF05190 MutS family domain IV 427 516 1.1E-28 T 11-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 SUPERFAMILY SSF48334 268 565 9.42E-86 T 11-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Gene3D G3DSA:3.40.1170.10 1 122 3.8E-51 T 11-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Pfam PF01624 MutS domain I 9 120 7.2E-41 T 11-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Gene3D G3DSA:1.10.1420.10 387 502 1.1E-101 T 11-10-2018 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Pfam PF00488 MutS domain V 610 796 2.0E-87 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Pfam PF05188 MutS domain II 129 253 8.3E-28 T 11-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 PIRSF PIRSF037677 2 841 5.3E-157 T 11-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 SMART SM00534 606 793 3.9E-118 T 11-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 APJL_1635 01e5e6a0851971c2a72f105f4bea7ae7 864 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 8 855 25.058 T 11-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 APJL_1004 f12d5b003669df2c30da3e4941df5818 625 Gene3D G3DSA:3.30.565.10 2 214 5.5E-77 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_1004 f12d5b003669df2c30da3e4941df5818 625 PRINTS PR00775 90kDa heat shock protein signature 121 143 1.6E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APJL_1004 f12d5b003669df2c30da3e4941df5818 625 PRINTS PR00775 90kDa heat shock protein signature 171 188 1.6E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APJL_1004 f12d5b003669df2c30da3e4941df5818 625 PRINTS PR00775 90kDa heat shock protein signature 6 26 1.6E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APJL_1004 f12d5b003669df2c30da3e4941df5818 625 PRINTS PR00775 90kDa heat shock protein signature 27 49 1.6E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APJL_1004 f12d5b003669df2c30da3e4941df5818 625 PRINTS PR00775 90kDa heat shock protein signature 76 93 1.6E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APJL_1004 f12d5b003669df2c30da3e4941df5818 625 PRINTS PR00775 90kDa heat shock protein signature 189 207 1.6E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APJL_1004 f12d5b003669df2c30da3e4941df5818 625 PRINTS PR00775 90kDa heat shock protein signature 94 111 1.6E-64 T 11-10-2018 IPR020575 Heat shock protein Hsp90, N-terminal APJL_1004 f12d5b003669df2c30da3e4941df5818 625 SUPERFAMILY SSF54211 231 486 6.22E-96 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_1004 f12d5b003669df2c30da3e4941df5818 625 SUPERFAMILY SSF110942 513 624 1.01E-35 T 11-10-2018 IPR037196 HSP90, C-terminal domain APJL_1004 f12d5b003669df2c30da3e4941df5818 625 SMART SM00387 28 183 2.7E-11 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_1004 f12d5b003669df2c30da3e4941df5818 625 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 182 1.2E-13 T 11-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase APJL_1004 f12d5b003669df2c30da3e4941df5818 625 Gene3D G3DSA:3.30.230.80 230 402 9.0E-68 T 11-10-2018 APJL_1004 f12d5b003669df2c30da3e4941df5818 625 Gene3D G3DSA:1.20.120.790 495 625 9.2E-43 T 11-10-2018 IPR037196 HSP90, C-terminal domain APJL_1004 f12d5b003669df2c30da3e4941df5818 625 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 26 35 - T 11-10-2018 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0051082 APJL_1004 f12d5b003669df2c30da3e4941df5818 625 Pfam PF00183 Hsp90 protein 221 624 1.0E-123 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 APJL_1004 f12d5b003669df2c30da3e4941df5818 625 Gene3D G3DSA:3.40.50.11260 403 494 9.0E-35 T 11-10-2018 APJL_1004 f12d5b003669df2c30da3e4941df5818 625 SUPERFAMILY SSF55874 5 215 1.7E-66 T 11-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily APJL_1004 f12d5b003669df2c30da3e4941df5818 625 Hamap MF_00505 Chaperone protein HtpG [htpG]. 3 625 32.253 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 APJL_1004 f12d5b003669df2c30da3e4941df5818 625 PIRSF PIRSF002583 1 625 3.4E-214 T 11-10-2018 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0051082 APJL_1341 ac54e68a51b9fff7f6aeeaba43b4c52d 269 Gene3D G3DSA:3.40.50.300 66 269 3.2E-63 T 11-10-2018 APJL_1341 ac54e68a51b9fff7f6aeeaba43b4c52d 269 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 58 268 8.1E-88 T 11-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 APJL_1341 ac54e68a51b9fff7f6aeeaba43b4c52d 269 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 86 247 1.0E-36 T 11-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain APJL_1341 ac54e68a51b9fff7f6aeeaba43b4c52d 269 PIRSF PIRSF005624 51 269 1.2E-91 T 11-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 APJL_1341 ac54e68a51b9fff7f6aeeaba43b4c52d 269 SUPERFAMILY SSF52540 70 266 8.33E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1566 6760331fbe8dbf08ad9430d5b97749ba 86 SUPERFAMILY SSF47598 1 79 1.49E-21 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 APJL_1566 6760331fbe8dbf08ad9430d5b97749ba 86 Pfam PF08681 Protein of unknown function (DUF1778) 6 80 4.0E-24 T 11-10-2018 IPR014795 Vibrio phage ICP1, Orf50 APJL_1566 6760331fbe8dbf08ad9430d5b97749ba 86 Gene3D G3DSA:1.20.5.780 1 83 1.2E-13 T 11-10-2018 APJL_0811 bb7901aa457a70d2e7cd731741bcdb92 262 SUPERFAMILY SSF50800 2 259 7.85E-17 T 11-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily APJL_0811 bb7901aa457a70d2e7cd731741bcdb92 262 SUPERFAMILY SSF141673 5 129 1.44E-21 T 11-10-2018 APJL_0811 bb7901aa457a70d2e7cd731741bcdb92 262 Pfam PF03476 MOSC N-terminal beta barrel domain 2 114 4.6E-19 T 11-10-2018 IPR005303 MOSC, N-terminal beta barrel KEGG: 00790+2.8.1.9|MetaCyc: PWY-5963 APJL_0811 bb7901aa457a70d2e7cd731741bcdb92 262 Pfam PF03473 MOSC domain 135 258 1.1E-25 T 11-10-2018 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 APJL_0042 656869028f4f9f10b306c6ce4578739d 203 Pfam PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 2 201 2.3E-88 T 11-10-2018 IPR019722 Glucose-6-phosphate 1-dehydrogenase, bacterial APJL_1309 be9709b70b6df17ad59b864a4c312018 317 PIRSF PIRSF000102 1 315 5.3E-60 T 11-10-2018 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 APJL_1309 be9709b70b6df17ad59b864a4c312018 317 Gene3D G3DSA:3.90.110.10 147 316 6.4E-47 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 APJL_1309 be9709b70b6df17ad59b864a4c312018 317 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 316 58.476 T 11-10-2018 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 APJL_1309 be9709b70b6df17ad59b864a4c312018 317 Gene3D G3DSA:3.40.50.720 1 146 2.4E-63 T 11-10-2018 APJL_1309 be9709b70b6df17ad59b864a4c312018 317 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 1.8E-45 T 11-10-2018 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 APJL_1309 be9709b70b6df17ad59b864a4c312018 317 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 315 7.8E-39 T 11-10-2018 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 APJL_1309 be9709b70b6df17ad59b864a4c312018 317 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 316 3.2E-120 T 11-10-2018 IPR010097 Malate dehydrogenase, type 1 GO:0006099|GO:0030060 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 APJL_1309 be9709b70b6df17ad59b864a4c312018 317 SUPERFAMILY SSF56327 146 316 2.16E-39 T 11-10-2018 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 APJL_1309 be9709b70b6df17ad59b864a4c312018 317 SUPERFAMILY SSF51735 1 145 1.02E-37 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0434 abe2f88617e78b99d784882df3207925 268 Gene3D G3DSA:3.30.910.20 112 227 4.6E-15 T 11-10-2018 IPR024930 Skp domain superfamily APJL_0434 abe2f88617e78b99d784882df3207925 268 Pfam PF03938 Outer membrane protein (OmpH-like) 11 107 4.8E-9 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 APJL_0434 abe2f88617e78b99d784882df3207925 268 Pfam PF03938 Outer membrane protein (OmpH-like) 114 226 9.6E-20 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 APJL_0434 abe2f88617e78b99d784882df3207925 268 Gene3D G3DSA:3.30.910.20 15 111 7.9E-7 T 11-10-2018 IPR024930 Skp domain superfamily APJL_0434 abe2f88617e78b99d784882df3207925 268 SUPERFAMILY SSF111384 136 227 3.66E-17 T 11-10-2018 APJL_0434 abe2f88617e78b99d784882df3207925 268 SMART SM00935 11 227 2.7E-31 T 11-10-2018 IPR005632 Chaperone protein Skp GO:0051082 APJL_0434 abe2f88617e78b99d784882df3207925 268 SUPERFAMILY SSF111384 23 71 1.1E-5 T 11-10-2018 APJL_1844 66536c9a2780872303a2c616a58dcc3d 243 Gene3D G3DSA:3.60.21.10 12 242 3.8E-16 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APJL_1844 66536c9a2780872303a2c616a58dcc3d 243 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 243 110.953 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 APJL_1844 66536c9a2780872303a2c616a58dcc3d 243 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 14 239 4.7E-107 T 11-10-2018 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 APJL_1844 66536c9a2780872303a2c616a58dcc3d 243 Pfam PF00149 Calcineurin-like phosphoesterase 13 208 2.8E-8 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APJL_1844 66536c9a2780872303a2c616a58dcc3d 243 SUPERFAMILY SSF56300 13 226 6.46E-28 T 11-10-2018 APJL_0490 ab3139d7e3b512ace0c73c3281a7985b 172 Pfam PF13420 Acetyltransferase (GNAT) domain 3 147 1.1E-12 T 11-10-2018 APJL_0490 ab3139d7e3b512ace0c73c3281a7985b 172 SUPERFAMILY SSF55729 3 163 4.77E-28 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_0490 ab3139d7e3b512ace0c73c3281a7985b 172 Gene3D G3DSA:3.40.630.30 1 169 1.1E-35 T 11-10-2018 APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 Gene3D G3DSA:3.40.190.10 94 293 7.0E-50 T 11-10-2018 APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 Gene3D G3DSA:1.10.10.10 3 86 4.7E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 SUPERFAMILY SSF46785 6 91 1.0E-23 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 Pfam PF03466 LysR substrate binding domain 91 294 7.3E-36 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 9.0E-23 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 SUPERFAMILY SSF53850 93 294 3.8E-38 T 11-10-2018 APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 Gene3D G3DSA:3.40.190.10 167 269 7.0E-50 T 11-10-2018 APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.4E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.4E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0920 2c56ed516175eb989ca5fd832b431b33 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.4E-10 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0144 6cf60d2547695f5de91f85f157a50de1 90 ProSitePatterns PS00151 Acylphosphatase signature 2. 32 48 - T 11-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APJL_0144 6cf60d2547695f5de91f85f157a50de1 90 Pfam PF00708 Acylphosphatase 6 88 2.7E-24 T 11-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APJL_0144 6cf60d2547695f5de91f85f157a50de1 90 SUPERFAMILY SSF54975 2 89 6.98E-25 T 11-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 APJL_0144 6cf60d2547695f5de91f85f157a50de1 90 Gene3D G3DSA:3.30.70.100 1 89 4.7E-26 T 11-10-2018 APJL_0907 e33b28539d3ca07815667a7993944639 223 Pfam PF01292 Prokaryotic cytochrome b561 15 192 7.6E-22 T 11-10-2018 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 APJL_0907 e33b28539d3ca07815667a7993944639 223 Gene3D G3DSA:1.20.950.20 7 222 3.6E-68 T 11-10-2018 APJL_0907 e33b28539d3ca07815667a7993944639 223 SUPERFAMILY SSF81342 11 211 2.28E-50 T 11-10-2018 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 APJL_0907 e33b28539d3ca07815667a7993944639 223 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 12 211 2.2E-82 T 11-10-2018 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 APJL_0784 a6328b310f46a13e16d3da0b6276eb65 640 Gene3D G3DSA:3.40.50.300 24 289 2.6E-45 T 11-10-2018 APJL_0784 a6328b310f46a13e16d3da0b6276eb65 640 Pfam PF13307 Helicase C-terminal domain 465 623 3.1E-35 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 APJL_0784 a6328b310f46a13e16d3da0b6276eb65 640 SMART SM00491 481 610 3.5E-49 T 11-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 APJL_0784 a6328b310f46a13e16d3da0b6276eb65 640 SUPERFAMILY SSF52540 20 238 1.06E-26 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0784 a6328b310f46a13e16d3da0b6276eb65 640 SUPERFAMILY SSF52540 47 605 2.4E-13 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0784 a6328b310f46a13e16d3da0b6276eb65 640 Gene3D G3DSA:3.40.50.300 445 639 1.3E-37 T 11-10-2018 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 SUPERFAMILY SSF52540 151 339 2.14E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0041 e348250ec0750c16deb00e71b21b376d 391 Gene3D G3DSA:3.40.50.300 159 337 1.7E-52 T 11-10-2018 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 1.8E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 1.8E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 1.8E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 1.8E-33 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 Hamap MF_01454 GTPase Obg [obg]. 2 333 47.432 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 PIRSF PIRSF002401 1 376 3.8E-139 T 11-10-2018 IPR035101 GTP-binding protein, Obg-type APJL_0041 e348250ec0750c16deb00e71b21b376d 391 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 11-10-2018 IPR006074 GTP1/OBG, conserved site GO:0005525 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 8.6E-145 T 11-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 APJL_0041 e348250ec0750c16deb00e71b21b376d 391 Pfam PF01018 GTP1/OBG 4 157 3.5E-57 T 11-10-2018 IPR006169 GTP1/OBG domain APJL_0041 e348250ec0750c16deb00e71b21b376d 391 Gene3D G3DSA:2.70.210.12 1 158 5.9E-62 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily APJL_0041 e348250ec0750c16deb00e71b21b376d 391 SUPERFAMILY SSF82051 2 157 6.15E-56 T 11-10-2018 IPR036726 GTP1/OBG domain superfamily APJL_0041 e348250ec0750c16deb00e71b21b376d 391 Pfam PF01926 50S ribosome-binding GTPase 161 284 2.2E-23 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_2027 3db8ccb599f2699dbae27cce0614a7ff 110 Pfam PF04219 Protein of unknown function, DUF 10 97 5.6E-35 T 11-10-2018 IPR007335 Protein of unknown function DUF413 APJL_1329 552b5e1d74b1288d5b18196149a5df4b 444 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 375 6.8E-142 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 APJL_1329 552b5e1d74b1288d5b18196149a5df4b 444 PIRSF PIRSF004539 1 444 4.4E-166 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 APJL_1329 552b5e1d74b1288d5b18196149a5df4b 444 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 6 443 1.4E-139 T 11-10-2018 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 263 276 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 Gene3D G3DSA:3.40.50.10490 96 289 7.1E-235 T 11-10-2018 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 Gene3D G3DSA:1.10.1390.10 505 545 3.3E-20 T 11-10-2018 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 44 522 42.578 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 Gene3D G3DSA:3.40.50.10490 12 504 7.1E-235 T 11-10-2018 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 SUPERFAMILY SSF53697 5 545 1.21E-222 T 11-10-2018 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 PRINTS PR00662 Glucose-6-phosphate isomerase signature 463 481 3.0E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 PRINTS PR00662 Glucose-6-phosphate isomerase signature 259 277 3.0E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 PRINTS PR00662 Glucose-6-phosphate isomerase signature 336 357 3.0E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 PRINTS PR00662 Glucose-6-phosphate isomerase signature 481 495 3.0E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 PRINTS PR00662 Glucose-6-phosphate isomerase signature 148 167 3.0E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 PRINTS PR00662 Glucose-6-phosphate isomerase signature 495 508 3.0E-56 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 495 512 - T 11-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_1156 d42a484dcf1a88c57e1681753869a88e 546 Pfam PF00342 Phosphoglucose isomerase 50 539 1.6E-259 T 11-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 APJL_0008 73462e1d20c3896ca5163704abbe128f 393 Pfam PF02684 Lipid-A-disaccharide synthetase 9 381 1.1E-145 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 APJL_0008 73462e1d20c3896ca5163704abbe128f 393 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 6 386 41.857 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 APJL_0008 73462e1d20c3896ca5163704abbe128f 393 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 2 383 1.8E-165 T 11-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 APJL_0008 73462e1d20c3896ca5163704abbe128f 393 SUPERFAMILY SSF53756 9 362 8.97E-29 T 11-10-2018 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 Gene3D G3DSA:3.30.70.1450 367 458 4.8E-28 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 SUPERFAMILY SSF116726 362 441 4.58E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 Gene3D G3DSA:3.40.50.720 233 366 1.4E-36 T 11-10-2018 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 4.7E-29 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 4.7E-29 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 4.7E-29 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 4.7E-29 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 4.7E-29 T 11-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 Pfam PF02080 TrkA-C domain 156 225 3.7E-13 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 Pfam PF02080 TrkA-C domain 390 451 6.1E-13 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 SUPERFAMILY SSF51735 231 376 2.45E-31 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 Gene3D G3DSA:3.40.50.720 2 139 8.5E-50 T 11-10-2018 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 SUPERFAMILY SSF116726 150 225 5.89E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 Gene3D G3DSA:3.30.70.1450 140 232 3.9E-20 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 SUPERFAMILY SSF51735 1 151 2.87E-33 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 Pfam PF02254 TrkA-N domain 3 109 4.4E-28 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APJL_1587 4013f192e3690b56a961d9dde2ef6698 458 Pfam PF02254 TrkA-N domain 235 350 2.9E-24 T 11-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 APJL_0160 2d525cb0c29a35378a73fdae98f9bfd1 384 SUPERFAMILY SSF103473 8 377 4.19E-39 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_0160 2d525cb0c29a35378a73fdae98f9bfd1 384 Gene3D G3DSA:1.20.1250.20 2 190 3.5E-15 T 11-10-2018 APJL_0160 2d525cb0c29a35378a73fdae98f9bfd1 384 PIRSF PIRSF004925 2 383 9.5E-98 T 11-10-2018 IPR026032 Probable 3-phenylpropionic acid transporter APJL_0160 2d525cb0c29a35378a73fdae98f9bfd1 384 Pfam PF12832 MFS_1 like family 14 361 3.9E-38 T 11-10-2018 IPR024989 Major facilitator superfamily associated domain APJL_0160 2d525cb0c29a35378a73fdae98f9bfd1 384 Gene3D G3DSA:1.20.1250.20 196 382 4.4E-33 T 11-10-2018 APJL_1036 7b7095427f393383e0d80131480e214f 213 Gene3D G3DSA:3.20.20.70 1 213 2.9E-74 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1036 7b7095427f393383e0d80131480e214f 213 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 9 209 1.4E-84 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APJL_1036 7b7095427f393383e0d80131480e214f 213 SUPERFAMILY SSF51569 2 210 6.59E-68 T 11-10-2018 APJL_1036 7b7095427f393383e0d80131480e214f 213 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 40 49 - T 11-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APJL_1036 7b7095427f393383e0d80131480e214f 213 Pfam PF01081 KDPG and KHG aldolase 8 203 3.6E-84 T 11-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APJL_1036 7b7095427f393383e0d80131480e214f 213 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 128 141 - T 11-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 SUPERFAMILY SSF51735 1 204 1.88E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 Gene3D G3DSA:1.10.1040.10 208 379 1.5E-63 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 Gene3D G3DSA:3.40.50.720 1 206 8.2E-78 T 11-10-2018 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 379 40.954 T 11-10-2018 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 151 367 4.3E-59 T 11-10-2018 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 151 163 - T 11-10-2018 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 SUPERFAMILY SSF48179 205 373 7.48E-41 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 124 1.8E-24 T 11-10-2018 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 PRINTS PR00084 Mannitol dehydrogenase signature 171 186 1.3E-17 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 PRINTS PR00084 Mannitol dehydrogenase signature 115 128 1.3E-17 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 PRINTS PR00084 Mannitol dehydrogenase signature 151 164 1.3E-17 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APJL_1662 636e1ffaf981df15ef0fd1d5cb9a816a 379 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 1.3E-17 T 11-10-2018 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 APJL_1854 0b430a5246e24beb920988a0122e275e 344 Gene3D G3DSA:3.30.160.60 304 342 1.8E-19 T 11-10-2018 APJL_1854 0b430a5246e24beb920988a0122e275e 344 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 3 338 1.1E-119 T 11-10-2018 IPR003770 Endolytic murein transglycosylase APJL_1854 0b430a5246e24beb920988a0122e275e 344 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 5 337 33.131 T 11-10-2018 IPR003770 Endolytic murein transglycosylase APJL_1854 0b430a5246e24beb920988a0122e275e 344 Gene3D G3DSA:3.30.160.60 74 112 2.7E-14 T 11-10-2018 APJL_1854 0b430a5246e24beb920988a0122e275e 344 Pfam PF02618 YceG-like family 45 330 2.1E-83 T 11-10-2018 IPR003770 Endolytic murein transglycosylase APJL_0395 7ce90da1c661105a99ba01557a041cc3 438 Gene3D G3DSA:1.20.1250.20 210 433 1.2E-54 T 11-10-2018 APJL_0395 7ce90da1c661105a99ba01557a041cc3 438 ProSitePatterns PS00942 glpT family of transporters signature. 111 127 - T 11-10-2018 IPR021159 Glycerate/sugar phosphate transporter, conserved site Reactome: R-HSA-3229133|Reactome: R-HSA-70263 APJL_0395 7ce90da1c661105a99ba01557a041cc3 438 TIGRFAM TIGR00712 glpT: glycerol-3-phosphate transporter 1 427 1.1E-218 T 11-10-2018 IPR005267 Glycerol-3-phosphate transporter GO:0015169|GO:0015794|GO:0016021 APJL_0395 7ce90da1c661105a99ba01557a041cc3 438 Gene3D G3DSA:1.20.1250.20 1 195 3.2E-39 T 11-10-2018 APJL_0395 7ce90da1c661105a99ba01557a041cc3 438 Pfam PF07690 Major Facilitator Superfamily 18 386 7.0E-39 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_0395 7ce90da1c661105a99ba01557a041cc3 438 PIRSF PIRSF002808 1 436 8.7E-125 T 11-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 APJL_0395 7ce90da1c661105a99ba01557a041cc3 438 SUPERFAMILY SSF103473 9 424 6.41E-67 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_0395 7ce90da1c661105a99ba01557a041cc3 438 TIGRFAM TIGR00881 2A0104: phosphoglycerate transporter family protein 1 404 3.9E-126 T 11-10-2018 APJL_1917 561e0120f4ca14175cc893f8513674d7 377 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 62 71 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APJL_1917 561e0120f4ca14175cc893f8513674d7 377 SUPERFAMILY SSF53187 2 375 7.6E-68 T 11-10-2018 APJL_1917 561e0120f4ca14175cc893f8513674d7 377 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 3 376 50.778 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 APJL_1917 561e0120f4ca14175cc893f8513674d7 377 Gene3D G3DSA:3.30.70.360 179 292 8.8E-134 T 11-10-2018 APJL_1917 561e0120f4ca14175cc893f8513674d7 377 SUPERFAMILY SSF55031 180 289 1.94E-27 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APJL_1917 561e0120f4ca14175cc893f8513674d7 377 Pfam PF01546 Peptidase family M20/M25/M40 63 372 4.1E-42 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APJL_1917 561e0120f4ca14175cc893f8513674d7 377 Pfam PF07687 Peptidase dimerisation domain 176 282 1.4E-22 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APJL_1917 561e0120f4ca14175cc893f8513674d7 377 Gene3D G3DSA:3.40.630.10 8 365 8.8E-134 T 11-10-2018 APJL_1917 561e0120f4ca14175cc893f8513674d7 377 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 6 374 1.0E-172 T 11-10-2018 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 APJL_0119 fc4c61a873b3d625f53214b72342544f 69 Pfam PF00313 'Cold-shock' DNA-binding domain 5 68 2.7E-29 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APJL_0119 fc4c61a873b3d625f53214b72342544f 69 PRINTS PR00050 Cold shock protein signature 42 60 1.6E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APJL_0119 fc4c61a873b3d625f53214b72342544f 69 PRINTS PR00050 Cold shock protein signature 6 21 1.6E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APJL_0119 fc4c61a873b3d625f53214b72342544f 69 PRINTS PR00050 Cold shock protein signature 27 36 1.6E-16 T 11-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 APJL_0119 fc4c61a873b3d625f53214b72342544f 69 SUPERFAMILY SSF50249 3 68 4.8E-25 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0119 fc4c61a873b3d625f53214b72342544f 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 17 36 - T 11-10-2018 IPR019844 Cold-shock conserved site APJL_0119 fc4c61a873b3d625f53214b72342544f 69 SMART SM00357 5 69 1.3E-28 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APJL_0119 fc4c61a873b3d625f53214b72342544f 69 Gene3D G3DSA:2.40.50.140 1 68 8.6E-30 T 11-10-2018 APJL_0119 fc4c61a873b3d625f53214b72342544f 69 PIRSF PIRSF002599 1 69 3.9E-23 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 APJL_0998 74072f4cdfca84f5b84c7cebb43b818f 294 SUPERFAMILY SSF53850 88 293 1.9E-32 T 11-10-2018 APJL_0998 74072f4cdfca84f5b84c7cebb43b818f 294 SUPERFAMILY SSF46785 1 111 2.0E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0998 74072f4cdfca84f5b84c7cebb43b818f 294 Gene3D G3DSA:1.10.10.10 1 91 7.8E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0998 74072f4cdfca84f5b84c7cebb43b818f 294 Gene3D G3DSA:3.40.190.10 92 290 2.7E-31 T 11-10-2018 APJL_0998 74072f4cdfca84f5b84c7cebb43b818f 294 Gene3D G3DSA:3.40.190.10 164 267 2.7E-31 T 11-10-2018 APJL_0998 74072f4cdfca84f5b84c7cebb43b818f 294 Pfam PF03466 LysR substrate binding domain 87 291 3.5E-38 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_0998 74072f4cdfca84f5b84c7cebb43b818f 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.2E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1521 67b9dd095aa1109378973efa75eac541 454 Gene3D G3DSA:3.40.1090.10 43 152 1.7E-8 T 11-10-2018 APJL_1521 67b9dd095aa1109378973efa75eac541 454 Pfam PF01734 Patatin-like phospholipase 60 302 2.4E-20 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 APJL_1521 67b9dd095aa1109378973efa75eac541 454 SUPERFAMILY SSF52151 56 373 1.8E-32 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APJL_0634 9c5a98f25c79647ae54634a634fda659 61 Gene3D G3DSA:3.30.160.160 1 47 7.7E-25 T 11-10-2018 APJL_0634 9c5a98f25c79647ae54634a634fda659 61 SUPERFAMILY SSF160113 1 58 3.53E-19 T 11-10-2018 IPR036913 YegP-like superfamily APJL_0634 9c5a98f25c79647ae54634a634fda659 61 Pfam PF07411 Domain of unknown function (DUF1508) 8 56 4.5E-21 T 11-10-2018 IPR010879 Domain of unknown function DUF1508 APJL_1416 c595788128a48d477031411cb5dbaebd 346 Pfam PF13343 Bacterial extracellular solute-binding protein 78 292 6.9E-31 T 11-10-2018 APJL_1416 c595788128a48d477031411cb5dbaebd 346 PIRSF PIRSF002825 4 343 1.2E-67 T 11-10-2018 IPR026045 Ferric binding protein APJL_1416 c595788128a48d477031411cb5dbaebd 346 Gene3D G3DSA:3.40.190.10 135 324 2.5E-126 T 11-10-2018 APJL_1416 c595788128a48d477031411cb5dbaebd 346 Gene3D G3DSA:3.40.190.10 33 309 2.5E-126 T 11-10-2018 APJL_1416 c595788128a48d477031411cb5dbaebd 346 SUPERFAMILY SSF53850 26 329 1.09E-69 T 11-10-2018 APJL_0086 2de19eca65863fedccb98d67cdddabfa 141 Gene3D G3DSA:1.10.10.690 2 141 4.2E-36 T 11-10-2018 IPR027405 YidB-like APJL_0086 2de19eca65863fedccb98d67cdddabfa 141 SUPERFAMILY SSF140804 11 136 4.45E-33 T 11-10-2018 IPR027405 YidB-like APJL_0086 2de19eca65863fedccb98d67cdddabfa 141 Pfam PF06078 Bacterial protein of unknown function (DUF937) 7 113 1.5E-11 T 11-10-2018 IPR009282 Protein of unknown function DUF937 APJL_0058 eae0ac1d8115532dd412e353aaba8df2 86 Gene3D G3DSA:3.30.70.20 2 86 1.8E-34 T 11-10-2018 APJL_0058 eae0ac1d8115532dd412e353aaba8df2 86 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_0058 eae0ac1d8115532dd412e353aaba8df2 86 Pfam PF00037 4Fe-4S binding domain 7 25 3.0E-5 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_0058 eae0ac1d8115532dd412e353aaba8df2 86 SUPERFAMILY SSF54862 5 77 1.43E-17 T 11-10-2018 APJL_1816 1bb90c7a712dc325c9a85abb0b92a89b 37 Pfam PF00444 Ribosomal protein L36 1 37 1.7E-19 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1816 1bb90c7a712dc325c9a85abb0b92a89b 37 SUPERFAMILY SSF57840 1 37 1.44E-16 T 11-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1816 1bb90c7a712dc325c9a85abb0b92a89b 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 5.9E-23 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1816 1bb90c7a712dc325c9a85abb0b92a89b 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 3.0E-9 T 11-10-2018 APJL_1816 1bb90c7a712dc325c9a85abb0b92a89b 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1816 1bb90c7a712dc325c9a85abb0b92a89b 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.316 T 11-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0891 d2640331d226ba9b16bd0391ee37813f 464 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 318 332 - T 11-10-2018 IPR001482 Type II/IV secretion system protein APJL_0891 d2640331d226ba9b16bd0391ee37813f 464 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 28 92 3.1E-9 T 11-10-2018 IPR007831 General secretory system II, protein E, N-terminal APJL_0891 d2640331d226ba9b16bd0391ee37813f 464 Gene3D G3DSA:3.40.50.300 225 462 3.0E-87 T 11-10-2018 APJL_0891 d2640331d226ba9b16bd0391ee37813f 464 Gene3D G3DSA:3.30.450.90 89 222 5.8E-41 T 11-10-2018 APJL_0891 d2640331d226ba9b16bd0391ee37813f 464 SUPERFAMILY SSF52540 115 457 3.58E-79 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0891 d2640331d226ba9b16bd0391ee37813f 464 SUPERFAMILY SSF160246 24 86 8.11E-8 T 11-10-2018 IPR037257 General secretory system II, protein E, N-terminal superfamily APJL_0891 d2640331d226ba9b16bd0391ee37813f 464 Pfam PF00437 Type II/IV secretion system protein 130 390 2.6E-84 T 11-10-2018 IPR001482 Type II/IV secretion system protein APJL_1428 2fdb0877649de93633bce31da468c9c1 345 Gene3D G3DSA:3.40.50.2000 164 345 1.4E-63 T 11-10-2018 APJL_1428 2fdb0877649de93633bce31da468c9c1 345 SUPERFAMILY SSF53756 1 345 2.62E-94 T 11-10-2018 APJL_1428 2fdb0877649de93633bce31da468c9c1 345 Gene3D G3DSA:3.40.50.2000 2 149 7.5E-51 T 11-10-2018 APJL_1428 2fdb0877649de93633bce31da468c9c1 345 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 344 1.2E-151 T 11-10-2018 IPR011910 ADP-heptose--LPS heptosyltransferase 2 GO:0009103|GO:0016757 APJL_1428 2fdb0877649de93633bce31da468c9c1 345 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 325 1.2E-79 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APJL_1790 450187fb5598ec0893a63e3c76e02a24 267 Hamap MF_01241 Glucosamine-6-phosphate deaminase [nagB]. 1 247 40.923 T 11-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 APJL_1790 450187fb5598ec0893a63e3c76e02a24 267 Gene3D G3DSA:3.40.50.1360 1 267 1.3E-115 T 11-10-2018 APJL_1790 450187fb5598ec0893a63e3c76e02a24 267 SUPERFAMILY SSF100950 1 263 2.56E-104 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_1790 450187fb5598ec0893a63e3c76e02a24 267 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 259 2.7E-141 T 11-10-2018 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 APJL_1790 450187fb5598ec0893a63e3c76e02a24 267 ProSitePatterns PS01161 Glucosamine/galactosamine-6-phosphate isomerases signature. 125 143 - T 11-10-2018 IPR018321 Glucosamine-6-phosphate isomerase, conserved site GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|Reactome: R-HSA-70171 APJL_1790 450187fb5598ec0893a63e3c76e02a24 267 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 8 230 2.7E-20 T 11-10-2018 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 APJL_1617 c34472d9968777a6d0fd7446350a44ff 241 Pfam PF01061 ABC-2 type transporter 1 203 2.3E-29 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APJL_1617 c34472d9968777a6d0fd7446350a44ff 241 PRINTS PR00164 ABC-2 type transport system membrane protein signature 46 68 1.9E-64 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_1617 c34472d9968777a6d0fd7446350a44ff 241 PRINTS PR00164 ABC-2 type transport system membrane protein signature 160 179 1.9E-64 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_1617 c34472d9968777a6d0fd7446350a44ff 241 PRINTS PR00164 ABC-2 type transport system membrane protein signature 15 36 1.9E-64 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_1617 c34472d9968777a6d0fd7446350a44ff 241 PRINTS PR00164 ABC-2 type transport system membrane protein signature 89 114 1.9E-64 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_1617 c34472d9968777a6d0fd7446350a44ff 241 PRINTS PR00164 ABC-2 type transport system membrane protein signature 123 147 1.9E-64 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_1617 c34472d9968777a6d0fd7446350a44ff 241 PRINTS PR00164 ABC-2 type transport system membrane protein signature 180 199 1.9E-64 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_1793 90a7f85b89466b88511371ef27b1e49f 218 Gene3D G3DSA:1.10.150.20 119 202 8.7E-9 T 11-10-2018 APJL_1793 90a7f85b89466b88511371ef27b1e49f 218 Pfam PF04994 TfoX C-terminal domain 120 197 2.2E-20 T 11-10-2018 IPR007077 TfoX, C-terminal APJL_1793 90a7f85b89466b88511371ef27b1e49f 218 Pfam PF04993 TfoX N-terminal domain 13 107 3.7E-19 T 11-10-2018 IPR007076 TfoX, N-terminal APJL_1793 90a7f85b89466b88511371ef27b1e49f 218 Gene3D G3DSA:3.30.1460.30 6 109 4.2E-13 T 11-10-2018 APJL_1793 90a7f85b89466b88511371ef27b1e49f 218 PIRSF PIRSF028788 2 213 5.4E-32 T 11-10-2018 IPR026256 Transcriptional regulator, TfoX/Sxy-type APJL_1793 90a7f85b89466b88511371ef27b1e49f 218 SUPERFAMILY SSF159894 7 108 8.37E-20 T 11-10-2018 APJL_0745 b2dd41f7db092bcf46b413d702988cf0 108 Pfam PF03840 Preprotein translocase SecG subunit 5 71 6.0E-21 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APJL_0745 b2dd41f7db092bcf46b413d702988cf0 108 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 74 1.0E-25 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APJL_0745 b2dd41f7db092bcf46b413d702988cf0 108 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.5E-41 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APJL_0745 b2dd41f7db092bcf46b413d702988cf0 108 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.5E-41 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APJL_0745 b2dd41f7db092bcf46b413d702988cf0 108 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.5E-41 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APJL_0745 b2dd41f7db092bcf46b413d702988cf0 108 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.5E-41 T 11-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 APJL_0266 cd2ea9baee09b7ab229d23b86610c436 98 Gene3D G3DSA:3.10.20.280 1 91 3.3E-31 T 11-10-2018 IPR037021 RnfH superfamily APJL_0266 cd2ea9baee09b7ab229d23b86610c436 98 Pfam PF03658 RnfH family Ubiquitin 7 89 1.1E-30 T 11-10-2018 IPR005346 RnfH protein APJL_0266 cd2ea9baee09b7ab229d23b86610c436 98 SUPERFAMILY SSF54285 6 81 5.89E-23 T 11-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp APJL_0266 cd2ea9baee09b7ab229d23b86610c436 98 Hamap MF_00460 Protein RnfH [rnfH]. 7 97 23.124 T 11-10-2018 IPR005346 RnfH protein APJL_1735 b08e06d833305c7a2b517f1ab0e33dd6 286 Gene3D G3DSA:3.20.20.150 1 285 1.0E-77 T 11-10-2018 APJL_1735 b08e06d833305c7a2b517f1ab0e33dd6 286 SUPERFAMILY SSF51658 2 279 3.8E-57 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily APJL_1735 b08e06d833305c7a2b517f1ab0e33dd6 286 Pfam PF01261 Xylose isomerase-like TIM barrel 23 234 2.7E-35 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain APJL_1735 b08e06d833305c7a2b517f1ab0e33dd6 286 TIGRFAM TIGR00542 hxl6Piso_put: putative hexulose-6-phosphate isomerase 2 286 2.0E-148 T 11-10-2018 IPR004560 L-ribulose-5-phosphate 3-epimerase GO:0005975|GO:0016861 KEGG: 00040+5.1.3.22|KEGG: 00053+5.1.3.22|MetaCyc: PWY-6961 APJL_0022 2d45b25139ec481cbafb421225bffcbe 229 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 1 223 22.755 T 11-10-2018 IPR026579 Cell division protein FtsQ GO:0090529 APJL_0022 2d45b25139ec481cbafb421225bffcbe 229 Pfam PF03799 Cell division protein FtsQ 101 215 4.4E-22 T 11-10-2018 IPR005548 Cell division protein FtsQ/DivIB APJL_0022 2d45b25139ec481cbafb421225bffcbe 229 Gene3D G3DSA:3.40.50.11690 98 227 4.7E-37 T 11-10-2018 APJL_0022 2d45b25139ec481cbafb421225bffcbe 229 Pfam PF08478 POTRA domain, FtsQ-type 36 97 1.7E-12 T 11-10-2018 IPR013685 POTRA domain, FtsQ-type APJL_0022 2d45b25139ec481cbafb421225bffcbe 229 Gene3D G3DSA:3.10.20.310 26 97 1.5E-17 T 11-10-2018 APJL_0523 93519b8d125da4a90aea8d02ce3d9ee9 73 Pfam PF00899 ThiF family 3 71 5.6E-7 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APJL_0523 93519b8d125da4a90aea8d02ce3d9ee9 73 SUPERFAMILY SSF69572 4 72 6.67E-15 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 APJL_0523 93519b8d125da4a90aea8d02ce3d9ee9 73 Gene3D G3DSA:3.40.50.720 1 73 1.0E-16 T 11-10-2018 APJL_0855 41da6912bd0b280f1d1462e17ec34c59 182 Pfam PF13242 HAD-hyrolase-like 107 177 1.0E-15 T 11-10-2018 APJL_0855 41da6912bd0b280f1d1462e17ec34c59 182 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 4 179 4.8E-86 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 APJL_0855 41da6912bd0b280f1d1462e17ec34c59 182 PIRSF PIRSF004682 1 182 7.7E-72 T 11-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 APJL_0855 41da6912bd0b280f1d1462e17ec34c59 182 Gene3D G3DSA:3.40.50.1000 1 182 3.3E-65 T 11-10-2018 IPR023214 HAD superfamily APJL_0855 41da6912bd0b280f1d1462e17ec34c59 182 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 4 154 5.3E-39 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APJL_0855 41da6912bd0b280f1d1462e17ec34c59 182 SUPERFAMILY SSF56784 2 181 2.27E-50 T 11-10-2018 IPR036412 HAD-like superfamily APJL_0855 41da6912bd0b280f1d1462e17ec34c59 182 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 154 8.6E-41 T 11-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 APJL_0231 f5de00c1f6cc0179dcd1f057484c7948 46 Pfam PF00665 Integrase core domain 2 46 2.8E-7 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_0231 f5de00c1f6cc0179dcd1f057484c7948 46 SUPERFAMILY SSF53098 1 46 9.71E-6 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1800 76e0ce2ad4949f943044c81f0a484e5d 110 Pfam PF00237 Ribosomal protein L22p/L17e 5 107 3.2E-39 T 11-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 APJL_1800 76e0ce2ad4949f943044c81f0a484e5d 110 Gene3D G3DSA:3.90.470.10 1 110 8.7E-48 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1800 76e0ce2ad4949f943044c81f0a484e5d 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.3E-50 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1800 76e0ce2ad4949f943044c81f0a484e5d 110 SUPERFAMILY SSF54843 1 109 1.7E-43 T 11-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 APJL_1800 76e0ce2ad4949f943044c81f0a484e5d 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 11-10-2018 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1800 76e0ce2ad4949f943044c81f0a484e5d 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.337 T 11-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0462 9715b36f78977387a2a923c04169baff 349 Gene3D G3DSA:2.40.10.340 122 266 6.2E-34 T 11-10-2018 APJL_0462 9715b36f78977387a2a923c04169baff 349 Gene3D G3DSA:2.40.10.350 180 257 6.2E-34 T 11-10-2018 APJL_0462 9715b36f78977387a2a923c04169baff 349 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 272 4.0E-102 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 APJL_0462 9715b36f78977387a2a923c04169baff 349 Pfam PF04085 rod shape-determining protein MreC 123 269 1.2E-37 T 11-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 APJL_0154 01d182c4794f352f278fc3db7e4128a0 207 Pfam PF02508 Rnf-Nqr subunit, membrane protein 7 194 1.1E-61 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 APJL_0154 01d182c4794f352f278fc3db7e4128a0 207 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 1 206 36.365 T 11-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 APJL_0154 01d182c4794f352f278fc3db7e4128a0 207 PIRSF PIRSF006102 2 207 1.6E-69 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 APJL_0154 01d182c4794f352f278fc3db7e4128a0 207 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 3 206 5.0E-105 T 11-10-2018 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 130 158 - T 11-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 3.5E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 117 133 3.5E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 3.5E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 3.5E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 3.5E-18 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 Pfam PF00106 short chain dehydrogenase 2 186 1.7E-41 T 11-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 SUPERFAMILY SSF51735 1 268 1.97E-59 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1277 b3db17b2b885db7e0cb6cb7415f8b314 273 Gene3D G3DSA:3.40.50.720 1 252 5.6E-63 T 11-10-2018 APJL_1446 213ba894f98a19c6d2964cfd8987cc1a 491 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 12 489 2.3E-219 T 11-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 APJL_1446 213ba894f98a19c6d2964cfd8987cc1a 491 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 8 489 48.622 T 11-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 APJL_1446 213ba894f98a19c6d2964cfd8987cc1a 491 SUPERFAMILY SSF51905 13 277 1.74E-18 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1446 213ba894f98a19c6d2964cfd8987cc1a 491 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 13 487 1.1E-197 T 11-10-2018 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254 APJL_1446 213ba894f98a19c6d2964cfd8987cc1a 491 Gene3D G3DSA:3.30.9.10 117 182 1.4E-5 T 11-10-2018 APJL_1446 213ba894f98a19c6d2964cfd8987cc1a 491 Gene3D G3DSA:3.50.50.60 14 248 1.4E-5 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1536 4250c3833a8e81d7901262721f92dd21 336 Gene3D G3DSA:3.40.50.720 2 188 1.7E-54 T 11-10-2018 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 SUPERFAMILY SSF48179 184 336 3.91E-56 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 185 324 2.4E-51 T 11-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 SUPERFAMILY SSF51735 9 183 2.54E-50 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1536 4250c3833a8e81d7901262721f92dd21 336 PIRSF PIRSF000114 2 336 4.4E-98 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 193 214 - T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 7 327 36.904 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 Gene3D G3DSA:1.10.1040.10 189 331 9.1E-50 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 243 260 4.5E-43 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 203 227 4.5E-43 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 11 28 4.5E-43 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 178 202 4.5E-43 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 137 157 4.5E-43 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 61 88 4.5E-43 T 11-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_1536 4250c3833a8e81d7901262721f92dd21 336 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 9 164 2.4E-49 T 11-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 APJL_0841 6be200a4896adb75b6ff95e1c75efa58 243 Pfam PF01810 LysE type translocator 46 230 1.1E-32 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APJL_0687 f183a5777ed5b0ae11f7f20b73f8df86 372 SUPERFAMILY SSF48695 12 177 2.56E-44 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily APJL_0687 f183a5777ed5b0ae11f7f20b73f8df86 372 Gene3D G3DSA:1.10.3820.10 2 180 1.3E-33 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily APJL_0687 f183a5777ed5b0ae11f7f20b73f8df86 372 SUPERFAMILY SSF46626 310 363 2.3E-5 T 11-10-2018 IPR036909 Cytochrome c-like domain superfamily GO:0009055|GO:0020037 Reactome: R-HSA-611105 APJL_0687 f183a5777ed5b0ae11f7f20b73f8df86 372 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 11 174 1.4E-64 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal APJL_0687 f183a5777ed5b0ae11f7f20b73f8df86 372 PIRSF PIRSF000014 1 372 1.2E-137 T 11-10-2018 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 APJL_0387 fc59081ae2382a176ea76f8108b298f9 463 TIGRFAM TIGR00797 matE: MATE efflux family protein 21 426 2.9E-100 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APJL_0387 fc59081ae2382a176ea76f8108b298f9 463 Pfam PF01554 MatE 248 409 8.6E-36 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APJL_0387 fc59081ae2382a176ea76f8108b298f9 463 Pfam PF01554 MatE 21 180 1.4E-35 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APJL_0387 fc59081ae2382a176ea76f8108b298f9 463 PIRSF PIRSF006603 9 457 3.0E-61 T 11-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 APJL_1268 0c06e67093fc569eeb10452722055462 213 Gene3D G3DSA:3.40.50.2300 1 109 5.7E-29 T 11-10-2018 APJL_1268 0c06e67093fc569eeb10452722055462 213 SUPERFAMILY SSF46894 104 206 8.79E-32 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APJL_1268 0c06e67093fc569eeb10452722055462 213 Gene3D G3DSA:1.10.10.10 110 210 4.6E-36 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1268 0c06e67093fc569eeb10452722055462 213 SUPERFAMILY SSF52172 2 114 1.85E-31 T 11-10-2018 IPR011006 CheY-like superfamily APJL_1268 0c06e67093fc569eeb10452722055462 213 Pfam PF00072 Response regulator receiver domain 5 100 1.3E-20 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_1268 0c06e67093fc569eeb10452722055462 213 SMART SM00862 131 206 2.8E-27 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APJL_1268 0c06e67093fc569eeb10452722055462 213 Pfam PF00486 Transcriptional regulatory protein, C terminal 132 206 1.1E-26 T 11-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 APJL_1268 0c06e67093fc569eeb10452722055462 213 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 207 6.3E-95 T 11-10-2018 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 APJL_1268 0c06e67093fc569eeb10452722055462 213 SMART SM00448 1 99 5.8E-23 T 11-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 APJL_0750 253eb266d5c8e9687be8fcec5cd7808b 1102 Gene3D G3DSA:3.30.70.100 987 1081 7.6E-11 T 11-10-2018 APJL_0750 253eb266d5c8e9687be8fcec5cd7808b 1102 Pfam PF00924 Mechanosensitive ion channel 878 1076 1.9E-42 T 11-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 APJL_0750 253eb266d5c8e9687be8fcec5cd7808b 1102 SUPERFAMILY SSF50182 920 985 4.9E-14 T 11-10-2018 IPR010920 LSM domain superfamily APJL_0750 253eb266d5c8e9687be8fcec5cd7808b 1102 Pfam PF12795 Mechanosensitive ion channel porin domain 43 269 3.2E-26 T 11-10-2018 IPR024393 Mechanosensitive ion channel MscS, porin domain APJL_0750 253eb266d5c8e9687be8fcec5cd7808b 1102 SUPERFAMILY SSF82861 833 917 8.5E-6 T 11-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 APJL_0750 253eb266d5c8e9687be8fcec5cd7808b 1102 Gene3D G3DSA:2.30.30.60 935 984 6.4E-11 T 11-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily APJL_0750 253eb266d5c8e9687be8fcec5cd7808b 1102 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 489 819 7.5E-96 T 11-10-2018 IPR025692 Mechanosensitive ion channel inner membrane domain 1 APJL_0750 253eb266d5c8e9687be8fcec5cd7808b 1102 SUPERFAMILY SSF82689 988 1086 2.48E-16 T 11-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 APJL_1980 4532226dbe5565de39ea45e7fd3e49e8 375 Pfam PF01546 Peptidase family M20/M25/M40 75 369 1.5E-15 T 11-10-2018 IPR002933 Peptidase M20 GO:0016787 APJL_1980 4532226dbe5565de39ea45e7fd3e49e8 375 Gene3D G3DSA:3.30.70.360 176 285 5.4E-91 T 11-10-2018 APJL_1980 4532226dbe5565de39ea45e7fd3e49e8 375 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 74 83 - T 11-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 APJL_1980 4532226dbe5565de39ea45e7fd3e49e8 375 PIRSF PIRSF037238 1 372 1.7E-96 T 11-10-2018 IPR017150 Peptidase M20, glutamate carboxypeptidase APJL_1980 4532226dbe5565de39ea45e7fd3e49e8 375 SUPERFAMILY SSF53187 5 373 4.1E-40 T 11-10-2018 APJL_1980 4532226dbe5565de39ea45e7fd3e49e8 375 SUPERFAMILY SSF55031 176 277 2.75E-21 T 11-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain APJL_1980 4532226dbe5565de39ea45e7fd3e49e8 375 Gene3D G3DSA:3.40.630.10 13 359 5.4E-91 T 11-10-2018 APJL_1980 4532226dbe5565de39ea45e7fd3e49e8 375 Pfam PF07687 Peptidase dimerisation domain 175 273 4.6E-18 T 11-10-2018 IPR011650 Peptidase M20, dimerisation domain APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 Gene3D G3DSA:3.40.50.300 8 175 3.1E-5 T 11-10-2018 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 SUPERFAMILY SSF52540 29 243 2.71E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 ProSitePatterns PS00622 LuxR-type HTH domain signature. 855 882 - T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 Gene3D G3DSA:1.10.10.10 811 900 2.9E-18 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 SUPERFAMILY SSF46894 832 896 2.38E-16 T 11-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 Gene3D G3DSA:1.25.40.10 452 810 1.2E-68 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 SUPERFAMILY SSF48452 450 808 2.09E-139 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 855 871 2.6E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 871 883 2.6E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 841 855 2.6E-9 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 Pfam PF00196 Bacterial regulatory proteins, luxR family 840 894 2.8E-18 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_1245 eff229c3a19e9eedfd7694521fc9e129 905 SMART SM00421 838 895 2.7E-19 T 11-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 APJL_0512 c5d743970a6856b621efe11572f224f9 236 Pfam PF00881 Nitroreductase family 10 157 5.9E-18 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 APJL_0512 c5d743970a6856b621efe11572f224f9 236 PIRSF PIRSF005426 2 236 2.1E-74 T 11-10-2018 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 APJL_0512 c5d743970a6856b621efe11572f224f9 236 SUPERFAMILY SSF55469 5 234 2.36E-62 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_0512 c5d743970a6856b621efe11572f224f9 236 Gene3D G3DSA:3.40.109.10 4 236 8.4E-64 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_1540 c13dbb55901be4885dfb0af6dce64265 180 SUPERFAMILY SSF52833 45 177 5.45E-33 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1540 c13dbb55901be4885dfb0af6dce64265 180 Pfam PF08534 Redoxin 40 163 8.8E-20 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APJL_1540 c13dbb55901be4885dfb0af6dce64265 180 Gene3D G3DSA:3.40.30.10 18 180 1.1E-40 T 11-10-2018 APJL_1540 c13dbb55901be4885dfb0af6dce64265 180 ProSitePatterns PS00194 Thioredoxin family active site. 71 89 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APJL_1540 c13dbb55901be4885dfb0af6dce64265 180 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 5 177 6.4E-75 T 11-10-2018 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 APJL_1061 1fa8a939c2207c7390958d9eb350e429 405 Gene3D G3DSA:3.40.640.10 53 294 1.6E-142 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_1061 1fa8a939c2207c7390958d9eb350e429 405 Gene3D G3DSA:3.90.1150.10 22 398 1.6E-142 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_1061 1fa8a939c2207c7390958d9eb350e429 405 SUPERFAMILY SSF53383 6 402 1.27E-93 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_1061 1fa8a939c2207c7390958d9eb350e429 405 Pfam PF00155 Aminotransferase class I and II 36 393 4.9E-48 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 SUPERFAMILY SSF47005 108 152 1.31E-10 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 179 407 1.9E-86 T 11-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 Gene3D G3DSA:4.10.320.10 103 153 1.4E-17 T 11-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 408 1.6E-188 T 11-10-2018 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 SUPERFAMILY SSF52777 179 408 8.9E-94 T 11-10-2018 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 SUPERFAMILY SSF51230 1 87 4.84E-24 T 11-10-2018 IPR011053 Single hybrid motif APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 Gene3D G3DSA:3.30.559.10 177 409 4.3E-102 T 11-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 Pfam PF00364 Biotin-requiring enzyme 4 76 2.2E-19 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 Pfam PF02817 e3 binding domain 117 148 5.3E-10 T 11-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 APJL_0481 b16f15a5ddd1e53a531bebb662bbc6b6 409 Gene3D G3DSA:2.40.50.100 1 78 1.6E-22 T 11-10-2018 APJL_1108 534da24386303a281b142c45e281e141 93 Pfam PF06961 Protein of unknown function (DUF1294) 13 67 1.4E-24 T 11-10-2018 IPR010718 Protein of unknown function DUF1294 APJL_1108 534da24386303a281b142c45e281e141 93 PIRSF PIRSF002599 2 86 3.3E-11 T 11-10-2018 IPR012156 Cold shock, CspA GO:0003676 APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 Gene3D G3DSA:2.10.109.10 88 210 1.7E-42 T 11-10-2018 APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 SUPERFAMILY SSF51306 84 206 2.09E-37 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 Pfam PF00717 Peptidase S24-like 122 187 3.6E-15 T 11-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 Gene3D G3DSA:1.10.10.10 3 71 1.6E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 SUPERFAMILY SSF46785 5 71 7.27E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 Pfam PF01726 LexA DNA binding domain 4 67 5.2E-29 T 11-10-2018 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 Hamap MF_00015 LexA repressor [lexA]. 5 207 32.803 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 TIGRFAM TIGR00498 lexA: repressor LexA 4 207 5.9E-78 T 11-10-2018 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 158 170 2.5E-12 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 130 141 2.5E-12 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APJL_1127 9642d8adf32ed97f2cfe05f9cb62f716 210 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 119 129 2.5E-12 T 11-10-2018 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 APJL_1471 d54c270fc6e1fcd3252da8cdfbb6ec51 487 SUPERFAMILY SSF50475 3 322 6.28E-125 T 11-10-2018 APJL_1471 d54c270fc6e1fcd3252da8cdfbb6ec51 487 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 11 431 1.8E-168 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APJL_1471 d54c270fc6e1fcd3252da8cdfbb6ec51 487 Gene3D G3DSA:1.20.5.570 455 487 5.1E-16 T 11-10-2018 APJL_1471 d54c270fc6e1fcd3252da8cdfbb6ec51 487 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 70.958 T 11-10-2018 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APJL_1471 d54c270fc6e1fcd3252da8cdfbb6ec51 487 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 1.7E-172 T 11-10-2018 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 APJL_1471 d54c270fc6e1fcd3252da8cdfbb6ec51 487 Gene3D G3DSA:3.40.1670.10 337 454 2.9E-50 T 11-10-2018 APJL_1471 d54c270fc6e1fcd3252da8cdfbb6ec51 487 SUPERFAMILY SSF143968 323 487 1.7E-66 T 11-10-2018 APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 Gene3D G3DSA:3.30.460.10 69 229 4.1E-57 T 11-10-2018 APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 Gene3D G3DSA:1.10.3090.10 231 480 1.2E-88 T 11-10-2018 APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 51 499 35.337 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 263 320 9.8E-19 T 11-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 SUPERFAMILY SSF81891 231 441 2.09E-46 T 11-10-2018 APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 Pfam PF01743 Poly A polymerase head domain 101 232 4.9E-37 T 11-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 SUPERFAMILY SSF81301 75 228 1.96E-38 T 11-10-2018 APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 Pfam PF12626 Polymerase A arginine-rich C-terminus 377 496 2.7E-36 T 11-10-2018 IPR025866 Polymerase A arginine-rich C-terminal domain APJL_0177 d4cb36a49980575c804ae1f94b50e043 510 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 74 500 1.9E-152 T 11-10-2018 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 APJL_1458 3bd0aa1d4a6979b8393b2a33a9d40a17 140 Pfam PF03892 Nitrate reductase cytochrome c-type subunit (NapB) 31 132 3.2E-39 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB APJL_1458 3bd0aa1d4a6979b8393b2a33a9d40a17 140 PIRSF PIRSF006105 1 140 1.6E-45 T 11-10-2018 IPR005591 Nitrate reductase cytochrome c-type subunit NapB APJL_1458 3bd0aa1d4a6979b8393b2a33a9d40a17 140 SUPERFAMILY SSF48695 25 137 7.11E-40 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily APJL_1458 3bd0aa1d4a6979b8393b2a33a9d40a17 140 Gene3D G3DSA:1.10.1130.10 52 119 6.0E-30 T 11-10-2018 APJL_0900 81253cadc07406d49edb599aac0bea93 705 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 499 592 2.5E-17 T 11-10-2018 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APJL_0900 81253cadc07406d49edb599aac0bea93 705 SUPERFAMILY SSF48179 498 596 1.96E-22 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_0900 81253cadc07406d49edb599aac0bea93 705 Gene3D G3DSA:3.40.50.720 310 501 5.7E-50 T 11-10-2018 APJL_0900 81253cadc07406d49edb599aac0bea93 705 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 496 521 - T 11-10-2018 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APJL_0900 81253cadc07406d49edb599aac0bea93 705 SUPERFAMILY SSF48179 620 703 1.19E-16 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_0900 81253cadc07406d49edb599aac0bea93 705 Gene3D G3DSA:1.10.1040.50 502 705 3.7E-56 T 11-10-2018 APJL_0900 81253cadc07406d49edb599aac0bea93 705 SUPERFAMILY SSF51735 316 496 3.36E-39 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0900 81253cadc07406d49edb599aac0bea93 705 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 496 2.4E-45 T 11-10-2018 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7656|MetaCyc: PWY-7726|MetaCyc: PWY-7778|MetaCyc: PWY-7779 APJL_0900 81253cadc07406d49edb599aac0bea93 705 Pfam PF00378 Enoyl-CoA hydratase/isomerase 18 206 3.4E-28 T 11-10-2018 IPR001753 Enoyl-CoA hydratase/isomerase GO:0003824 APJL_0900 81253cadc07406d49edb599aac0bea93 705 Gene3D G3DSA:3.90.226.10 6 309 3.1E-59 T 11-10-2018 APJL_0900 81253cadc07406d49edb599aac0bea93 705 SUPERFAMILY SSF52096 8 308 7.71E-47 T 11-10-2018 IPR029045 ClpP/crotonase-like domain superfamily APJL_1601 1c87a7e82c5724a582f681c7446abd24 246 SUPERFAMILY SSF74653 147 242 5.36E-12 T 11-10-2018 APJL_1601 1c87a7e82c5724a582f681c7446abd24 246 Gene3D G3DSA:3.30.1150.10 173 242 6.5E-10 T 11-10-2018 APJL_1601 1c87a7e82c5724a582f681c7446abd24 246 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 177 241 3.2E-11 T 11-10-2018 IPR006260 TonB/TolA, C-terminal APJL_1601 1c87a7e82c5724a582f681c7446abd24 246 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 178 241 8.1E-12 T 11-10-2018 IPR037682 TonB, C-terminal GO:0055085 APJL_0339 9194273a3ca1bdf81cb01814af02a9af 356 Gene3D G3DSA:3.40.50.300 118 324 3.6E-74 T 11-10-2018 APJL_0339 9194273a3ca1bdf81cb01814af02a9af 356 SUPERFAMILY SSF52540 78 296 5.24E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0339 9194273a3ca1bdf81cb01814af02a9af 356 Pfam PF02562 PhoH-like protein 121 324 2.2E-93 T 11-10-2018 IPR003714 PhoH-like protein GO:0005524 APJL_1812 3b1368afb93e0ee205421959b26db867 166 SUPERFAMILY SSF54211 79 159 4.3E-27 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_1812 3b1368afb93e0ee205421959b26db867 166 SUPERFAMILY SSF54768 9 75 6.07E-24 T 11-10-2018 APJL_1812 3b1368afb93e0ee205421959b26db867 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 163 34.93 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 APJL_1812 3b1368afb93e0ee205421959b26db867 166 Gene3D G3DSA:3.30.230.10 74 166 9.1E-39 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_1812 3b1368afb93e0ee205421959b26db867 166 Gene3D G3DSA:3.30.160.20 1 73 5.7E-34 T 11-10-2018 APJL_1812 3b1368afb93e0ee205421959b26db867 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 11 74 2.7E-29 T 11-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 APJL_1812 3b1368afb93e0ee205421959b26db867 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 28 60 - T 11-10-2018 IPR018192 Ribosomal protein S5, N-terminal, conserved site APJL_1812 3b1368afb93e0ee205421959b26db867 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 87 157 1.6E-30 T 11-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 APJL_1812 3b1368afb93e0ee205421959b26db867 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 2.7E-71 T 11-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 APJL_2023 12768de27f324f867c1e0694eeadc66b 431 PIRSF PIRSF000521 1 119 4.3E-10 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_2023 12768de27f324f867c1e0694eeadc66b 431 PIRSF PIRSF000521 113 423 5.6E-36 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_2023 12768de27f324f867c1e0694eeadc66b 431 SUPERFAMILY SSF53383 3 422 1.01E-120 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_2023 12768de27f324f867c1e0694eeadc66b 431 Gene3D G3DSA:3.40.640.10 48 313 3.8E-134 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_2023 12768de27f324f867c1e0694eeadc66b 431 Gene3D G3DSA:3.90.1150.10 4 419 3.8E-134 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_2023 12768de27f324f867c1e0694eeadc66b 431 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 232 269 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_2023 12768de27f324f867c1e0694eeadc66b 431 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 1 430 1.9E-251 T 11-10-2018 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|MetaCyc: PWY-7855|MetaCyc: PWY-7988 APJL_2023 12768de27f324f867c1e0694eeadc66b 431 Pfam PF00202 Aminotransferase class-III 12 420 3.1E-96 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 Gene3D G3DSA:3.40.50.300 457 630 7.3E-51 T 11-10-2018 APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 SUPERFAMILY SSF52540 196 453 1.05E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 SMART SM00490 505 589 7.9E-22 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 664 1.3E-245 T 11-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 Gene3D G3DSA:3.40.50.300 208 450 1.3E-85 T 11-10-2018 APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 Gene3D G3DSA:2.40.50.140 47 141 2.8E-13 T 11-10-2018 APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 SUPERFAMILY SSF50249 9 174 4.63E-41 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 Pfam PF00271 Helicase conserved C-terminal domain 476 588 2.0E-17 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 SUPERFAMILY SSF52540 388 600 1.33E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 SMART SM00487 265 459 1.6E-31 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 Pfam PF17191 RecG wedge domain 15 172 5.4E-29 T 11-10-2018 IPR033454 RecG, wedge domain APJL_1863 9c11ad9f6e63ac95c06c8503a7e5dc5c 693 Pfam PF00270 DEAD/DEAH box helicase 292 407 1.1E-18 T 11-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 APJL_0013 cd300e8cad3fa0ff73301cf0367c7df2 686 Gene3D G3DSA:3.40.710.10 399 578 2.6E-100 T 11-10-2018 APJL_0013 cd300e8cad3fa0ff73301cf0367c7df2 686 Hamap MF_02080 Peptidoglycan D,D-transpeptidase FtsI [ftsI]. 32 671 39.677 T 11-10-2018 IPR037532 Peptidoglycan D,D-transpeptidase FtsI GO:0005887|GO:0008658|GO:0008955|GO:0009252|GO:0051301 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_0013 cd300e8cad3fa0ff73301cf0367c7df2 686 SUPERFAMILY SSF56601 290 671 5.64E-82 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APJL_0013 cd300e8cad3fa0ff73301cf0367c7df2 686 Pfam PF03717 Penicillin-binding Protein dimerisation domain 83 324 6.2E-16 T 11-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 APJL_0013 cd300e8cad3fa0ff73301cf0367c7df2 686 SUPERFAMILY SSF56519 76 337 3.83E-34 T 11-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 APJL_0013 cd300e8cad3fa0ff73301cf0367c7df2 686 Gene3D G3DSA:3.30.450.330 340 651 2.6E-100 T 11-10-2018 APJL_0013 cd300e8cad3fa0ff73301cf0367c7df2 686 Pfam PF00905 Penicillin binding protein transpeptidase domain 363 655 1.8E-78 T 11-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 APJL_1580 b294add1343842a0358f78f0b177291b 378 SUPERFAMILY SSF53756 4 377 5.58E-135 T 11-10-2018 APJL_1580 b294add1343842a0358f78f0b177291b 378 Gene3D G3DSA:3.40.50.2000 6 372 3.2E-144 T 11-10-2018 APJL_1580 b294add1343842a0358f78f0b177291b 378 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 26 374 1.1E-118 T 11-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 APJL_1580 b294add1343842a0358f78f0b177291b 378 Gene3D G3DSA:3.40.50.2000 191 360 3.2E-144 T 11-10-2018 APJL_1580 b294add1343842a0358f78f0b177291b 378 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 5 375 2.3E-151 T 11-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 APJL_0111 b8d6341ab1c005936f721ad090e83e5e 106 SUPERFAMILY SSF102829 6 95 3.92E-20 T 11-10-2018 IPR036192 Cell division protein ZapA-like superfamily APJL_0111 b8d6341ab1c005936f721ad090e83e5e 106 Gene3D G3DSA:1.10.20.30 1 47 1.4E-14 T 11-10-2018 APJL_0111 b8d6341ab1c005936f721ad090e83e5e 106 Pfam PF05164 Cell division protein ZapA 6 87 1.4E-15 T 11-10-2018 IPR007838 Cell division protein ZapA-like APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 SUPERFAMILY SSF69065 2 156 2.44E-50 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 SUPERFAMILY SSF54768 106 220 8.33E-27 T 11-10-2018 APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 SMART SM00535 18 146 9.5E-53 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 Hamap MF_00104 Ribonuclease 3 [rnc]. 6 217 29.752 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 Pfam PF00035 Double-stranded RNA binding motif 153 220 3.9E-16 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 ProSitePatterns PS00517 Ribonuclease III family signature. 35 43 - T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 6 220 3.4E-74 T 11-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 SMART SM00358 153 221 1.1E-21 T 11-10-2018 IPR014720 Double-stranded RNA-binding domain APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 Gene3D G3DSA:3.30.160.20 151 222 8.6E-20 T 11-10-2018 APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 Pfam PF14622 Ribonuclease-III-like 19 135 1.6E-34 T 11-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 APJL_0536 db46c13da1dd9bd1893a38270bf17d27 223 Gene3D G3DSA:1.10.1520.10 1 144 5.2E-46 T 11-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 APJL_2052 b2af48e67aed5931a18231e51965a229 269 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 10 263 1.9E-45 T 11-10-2018 IPR000150 Cof family GO:0016787 APJL_2052 b2af48e67aed5931a18231e51965a229 269 Pfam PF08282 haloacid dehalogenase-like hydrolase 11 263 2.3E-49 T 11-10-2018 APJL_2052 b2af48e67aed5931a18231e51965a229 269 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 10 236 3.2E-17 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 APJL_2052 b2af48e67aed5931a18231e51965a229 269 Gene3D G3DSA:3.30.1240.10 92 192 8.7E-59 T 11-10-2018 APJL_2052 b2af48e67aed5931a18231e51965a229 269 ProSitePatterns PS01229 Hypothetical cof family signature 2. 217 239 - T 11-10-2018 APJL_2052 b2af48e67aed5931a18231e51965a229 269 SUPERFAMILY SSF56784 6 266 6.4E-58 T 11-10-2018 IPR036412 HAD-like superfamily APJL_2052 b2af48e67aed5931a18231e51965a229 269 Gene3D G3DSA:3.40.50.1000 11 263 8.7E-59 T 11-10-2018 IPR023214 HAD superfamily APJL_1231 1ef7e73c48c6383ead4d1fbfb0562988 149 Pfam PF01475 Ferric uptake regulator family 12 133 1.0E-46 T 11-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 APJL_1231 1ef7e73c48c6383ead4d1fbfb0562988 149 SUPERFAMILY SSF46785 4 138 2.93E-39 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1231 1ef7e73c48c6383ead4d1fbfb0562988 149 Gene3D G3DSA:1.10.10.10 2 86 1.5E-28 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1231 1ef7e73c48c6383ead4d1fbfb0562988 149 Gene3D G3DSA:3.30.1490.190 88 145 1.9E-20 T 11-10-2018 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 PRINTS PR00714 Phosphomannose isomerase type I signature 33 48 1.6E-50 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 PRINTS PR00714 Phosphomannose isomerase type I signature 244 263 1.6E-50 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 PRINTS PR00714 Phosphomannose isomerase type I signature 282 301 1.6E-50 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 PRINTS PR00714 Phosphomannose isomerase type I signature 5 23 1.6E-50 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 PRINTS PR00714 Phosphomannose isomerase type I signature 81 102 1.6E-50 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 PRINTS PR00714 Phosphomannose isomerase type I signature 263 282 1.6E-50 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 PRINTS PR00714 Phosphomannose isomerase type I signature 126 149 1.6E-50 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 Gene3D G3DSA:2.60.120.10 8 283 1.5E-100 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 Gene3D G3DSA:1.10.441.10 150 308 1.5E-100 T 11-10-2018 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 126 134 - T 11-10-2018 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 PIRSF PIRSF001480 1 401 5.0E-107 T 11-10-2018 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 2 390 3.2E-72 T 11-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 SUPERFAMILY SSF51182 2 393 7.34E-99 T 11-10-2018 IPR011051 RmlC-like cupin domain superfamily APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 Gene3D G3DSA:2.60.120.10 309 387 1.5E-100 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APJL_1414 5dde8b1e1c199e49efd89596747eabb0 401 Pfam PF01238 Phosphomannose isomerase type I 2 365 1.1E-65 T 11-10-2018 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 APJL_1878 fca466a480751238452930be0495f7a1 254 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 4 250 1.9E-108 T 11-10-2018 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3|MetaCyc: PWY-5532 APJL_1878 fca466a480751238452930be0495f7a1 254 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 64 79 - T 11-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 APJL_1878 fca466a480751238452930be0495f7a1 254 Pfam PF01048 Phosphorylase superfamily 18 251 3.3E-38 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APJL_1878 fca466a480751238452930be0495f7a1 254 SUPERFAMILY SSF53167 5 247 5.11E-70 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 APJL_1878 fca466a480751238452930be0495f7a1 254 Gene3D G3DSA:3.40.50.1580 2 253 1.7E-81 T 11-10-2018 APJL_1395 efc4770189929be3e36b6e2867717136 434 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 20 430 1.4E-157 T 11-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 APJL_1395 efc4770189929be3e36b6e2867717136 434 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 19 426 5.6E-192 T 11-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 APJL_1395 efc4770189929be3e36b6e2867717136 434 PIRSF PIRSF015658 1 432 1.0E-174 T 11-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 APJL_1129 868880eec65450c09b8c93e5918323ec 243 Pfam PF03741 Integral membrane protein TerC family 15 204 3.7E-49 T 11-10-2018 IPR005496 Integral membrane protein TerC GO:0016021 APJL_0677 d0fb2e1e635754f203301fd5657573ba 702 Gene3D G3DSA:1.25.20.10 56 448 5.2E-56 T 11-10-2018 APJL_0677 d0fb2e1e635754f203301fd5657573ba 702 Pfam PF01464 Transglycosylase SLT domain 550 650 2.8E-26 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 APJL_0677 d0fb2e1e635754f203301fd5657573ba 702 SUPERFAMILY SSF48435 58 534 1.57E-82 T 11-10-2018 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 APJL_0677 d0fb2e1e635754f203301fd5657573ba 702 Gene3D G3DSA:1.10.1240.20 460 529 3.7E-17 T 11-10-2018 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily GO:0004553|GO:0042597 APJL_0677 d0fb2e1e635754f203301fd5657573ba 702 Pfam PF14718 Soluble lytic murein transglycosylase L domain 465 529 1.6E-24 T 11-10-2018 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 APJL_0677 d0fb2e1e635754f203301fd5657573ba 702 Gene3D G3DSA:1.10.530.10 531 702 3.1E-41 T 11-10-2018 APJL_0677 d0fb2e1e635754f203301fd5657573ba 702 SUPERFAMILY SSF53955 537 691 1.5E-38 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APJL_1622 a8d2ddd3829be4962169193884731a19 247 Gene3D G3DSA:3.30.70.240 174 247 1.4E-5 T 11-10-2018 APJL_1622 a8d2ddd3829be4962169193884731a19 247 Pfam PF09186 Domain of unknown function (DUF1949) 179 234 9.1E-15 T 11-10-2018 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal APJL_1622 a8d2ddd3829be4962169193884731a19 247 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 40 238 3.2E-75 T 11-10-2018 IPR015796 Impact family, bacterial/archaeal APJL_1622 a8d2ddd3829be4962169193884731a19 247 Pfam PF01205 Uncharacterized protein family UPF0029 56 163 1.2E-25 T 11-10-2018 IPR001498 Impact, N-terminal APJL_1622 a8d2ddd3829be4962169193884731a19 247 Gene3D G3DSA:3.30.230.30 37 172 3.4E-50 T 11-10-2018 IPR036956 Impact, N-terminal domain superfamily APJL_1622 a8d2ddd3829be4962169193884731a19 247 SUPERFAMILY SSF54211 40 169 4.93E-43 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_1622 a8d2ddd3829be4962169193884731a19 247 SUPERFAMILY SSF54980 173 240 3.09E-16 T 11-10-2018 IPR035647 EF-G domain III/V-like APJL_1622 a8d2ddd3829be4962169193884731a19 247 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 118 147 - T 11-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site APJL_1363 6d0fdd4a1d72b7589af306bcf0532bb8 188 ProSitePatterns PS00211 ABC transporters family signature. 109 123 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1363 6d0fdd4a1d72b7589af306bcf0532bb8 188 SUPERFAMILY SSF52540 3 186 5.15E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1363 6d0fdd4a1d72b7589af306bcf0532bb8 188 Gene3D G3DSA:3.40.50.300 1 188 5.3E-51 T 11-10-2018 APJL_1363 6d0fdd4a1d72b7589af306bcf0532bb8 188 Pfam PF00005 ABC transporter 3 136 5.2E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1363 6d0fdd4a1d72b7589af306bcf0532bb8 188 SMART SM00382 1 185 2.4E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1943 e59b0f4a128add7f54a97d51fa1030b0 175 Pfam PF00719 Inorganic pyrophosphatase 18 173 8.2E-54 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APJL_1943 e59b0f4a128add7f54a97d51fa1030b0 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APJL_1943 e59b0f4a128add7f54a97d51fa1030b0 175 Gene3D G3DSA:3.90.80.10 1 175 1.3E-69 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APJL_1943 e59b0f4a128add7f54a97d51fa1030b0 175 SUPERFAMILY SSF50324 4 175 5.1E-66 T 11-10-2018 IPR036649 Inorganic pyrophosphatase superfamily GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APJL_1943 e59b0f4a128add7f54a97d51fa1030b0 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.682 T 11-10-2018 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807|Reactome: R-HSA-71737 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 SUPERFAMILY SSF53335 403 711 3.83E-71 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 SUPERFAMILY SSF53335 147 371 6.64E-39 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 Gene3D G3DSA:3.40.50.150 492 710 3.0E-74 T 11-10-2018 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 Pfam PF02926 THUMP domain 30 156 1.4E-15 T 11-10-2018 IPR004114 THUMP domain GO:0003723 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 438 673 4.3E-22 T 11-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 SMART SM00981 59 157 4.7E-19 T 11-10-2018 IPR004114 THUMP domain GO:0003723 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 Pfam PF01170 Putative RNA methylase family UPF0020 165 374 3.9E-68 T 11-10-2018 IPR000241 Putative RNA methylase domain APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 Gene3D G3DSA:3.40.50.150 172 371 1.3E-134 T 11-10-2018 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 305 311 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 Gene3D G3DSA:3.30.2130.30 8 255 1.3E-134 T 11-10-2018 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 Gene3D G3DSA:3.30.750.80 400 491 1.0E-34 T 11-10-2018 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 7 710 31.277 T 11-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 198 209 - T 11-10-2018 IPR000241 Putative RNA methylase domain APJL_0060 6522971e4e8d6e4638d1c6901abd06a4 712 PIRSF PIRSF037618 2 711 1.2E-298 T 11-10-2018 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 APJL_0290 55c878b18735487b861e1abc4c146339 371 Gene3D G3DSA:3.40.50.300 9 227 7.8E-74 T 11-10-2018 APJL_0290 55c878b18735487b861e1abc4c146339 371 Gene3D G3DSA:2.40.50.140 292 305 5.8E-12 T 11-10-2018 APJL_0290 55c878b18735487b861e1abc4c146339 371 SMART SM00382 34 217 2.6E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0290 55c878b18735487b861e1abc4c146339 371 Pfam PF00005 ABC transporter 25 166 5.4E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0290 55c878b18735487b861e1abc4c146339 371 Pfam PF08402 TOBE domain 285 366 2.9E-7 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APJL_0290 55c878b18735487b861e1abc4c146339 371 SUPERFAMILY SSF50331 242 367 9.64E-9 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APJL_0290 55c878b18735487b861e1abc4c146339 371 Gene3D G3DSA:2.40.50.940 228 291 5.8E-12 T 11-10-2018 APJL_0290 55c878b18735487b861e1abc4c146339 371 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0290 55c878b18735487b861e1abc4c146339 371 SUPERFAMILY SSF52540 9 249 1.73E-88 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0290 55c878b18735487b861e1abc4c146339 371 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 40 366 6.3E-162 T 11-10-2018 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 APJL_0204 e21b5873faa38bb0295477869c20ea8c 157 PIRSF PIRSF006162 1 157 4.5E-47 T 11-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 APJL_0204 e21b5873faa38bb0295477869c20ea8c 157 Pfam PF04608 Phosphatidylglycerophosphatase A 11 153 1.5E-46 T 11-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 APJL_0204 e21b5873faa38bb0295477869c20ea8c 157 SUPERFAMILY SSF101307 4 155 1.31E-42 T 11-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 APJL_0643 9f4b41122f6f37ead13d8128c2583513 64 Hamap MF_00167 Translational regulator CsrA [csrA]. 1 61 17.886 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 APJL_0643 9f4b41122f6f37ead13d8128c2583513 64 Gene3D G3DSA:3.30.70.1680 1 60 8.0E-29 T 11-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 APJL_0643 9f4b41122f6f37ead13d8128c2583513 64 SUPERFAMILY SSF117130 1 52 1.07E-20 T 11-10-2018 IPR036107 Carbon storage regulator superfamily GO:0003723|GO:0006109|GO:0006402 APJL_0643 9f4b41122f6f37ead13d8128c2583513 64 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 56 1.5E-29 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 APJL_0643 9f4b41122f6f37ead13d8128c2583513 64 Pfam PF02599 Global regulator protein family 1 52 5.1E-28 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 APJL_0643 9f4b41122f6f37ead13d8128c2583513 64 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 6.0E-18 T 11-10-2018 IPR003751 Translational regulator CsrA GO:0003723|GO:0006109|GO:0006402 APJL_1326 a9f7772e9f0e4b8673d490178be98803 185 SUPERFAMILY SSF55811 4 181 2.98E-36 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_1326 a9f7772e9f0e4b8673d490178be98803 185 Gene3D G3DSA:3.90.79.10 8 185 5.5E-44 T 11-10-2018 APJL_1326 a9f7772e9f0e4b8673d490178be98803 185 Pfam PF00293 NUDIX domain 46 166 3.4E-11 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APJL_1648 c79fc569fd00c0d77e52f3ab759f1cee 205 Gene3D G3DSA:1.20.1050.10 82 192 1.5E-49 T 11-10-2018 APJL_1648 c79fc569fd00c0d77e52f3ab759f1cee 205 SUPERFAMILY SSF52833 1 89 2.56E-14 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1648 c79fc569fd00c0d77e52f3ab759f1cee 205 Pfam PF00043 Glutathione S-transferase, C-terminal domain 127 192 2.2E-4 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APJL_1648 c79fc569fd00c0d77e52f3ab759f1cee 205 Gene3D G3DSA:3.40.30.10 3 81 1.5E-49 T 11-10-2018 APJL_1648 c79fc569fd00c0d77e52f3ab759f1cee 205 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 80 3.7E-13 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APJL_1648 c79fc569fd00c0d77e52f3ab759f1cee 205 SUPERFAMILY SSF47616 72 192 3.05E-9 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APJL_0148 4c7a8990f82b3959c597574d28222439 325 Pfam PF00268 Ribonucleotide reductase, small chain 9 283 6.7E-51 T 11-10-2018 IPR000358 Ribonucleotide reductase small subunit family GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 APJL_0148 4c7a8990f82b3959c597574d28222439 325 SUPERFAMILY SSF47240 8 325 1.01E-64 T 11-10-2018 IPR009078 Ferritin-like superfamily APJL_0148 4c7a8990f82b3959c597574d28222439 325 Gene3D G3DSA:1.10.620.20 1 300 1.3E-57 T 11-10-2018 IPR012348 Ribonucleotide reductase-like GO:0016491|GO:0055114 Reactome: R-HSA-499943 APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 Pfam PF13545 Crp-like helix-turn-helix domain 167 240 4.9E-17 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 SUPERFAMILY SSF51206 22 161 4.32E-31 T 11-10-2018 IPR018490 Cyclic nucleotide-binding-like APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 192 208 7.9E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 208 223 7.9E-13 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 Pfam PF00027 Cyclic nucleotide-binding domain 50 131 2.1E-15 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 ProSitePatterns PS00042 Crp-type HTH domain signature. 194 217 - T 11-10-2018 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 SMART SM00100 29 150 1.6E-20 T 11-10-2018 IPR000595 Cyclic nucleotide-binding domain APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 SUPERFAMILY SSF46785 164 244 7.31E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 Gene3D G3DSA:1.10.10.10 164 246 3.2E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 SMART SM00419 186 234 4.9E-16 T 11-10-2018 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 APJL_0646 60bdc00dfe933b7c5637e9229912fdc2 255 Gene3D G3DSA:2.60.120.10 42 163 2.4E-45 T 11-10-2018 IPR014710 RmlC-like jelly roll fold APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 Pfam PF02872 5'-nucleotidase, C-terminal domain 366 560 7.1E-22 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 Pfam PF00149 Calcineurin-like phosphoesterase 34 270 1.2E-15 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 SUPERFAMILY SSF56300 30 364 4.1E-83 T 11-10-2018 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 ProSitePatterns PS00786 5'-nucleotidase signature 2. 119 130 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 ProSitePatterns PS00785 5'-nucleotidase signature 1. 34 46 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 PRINTS PR01607 Apyrase family signature 293 313 2.5E-28 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 PRINTS PR01607 Apyrase family signature 253 276 2.5E-28 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 PRINTS PR01607 Apyrase family signature 225 242 2.5E-28 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 PRINTS PR01607 Apyrase family signature 541 560 2.5E-28 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 PRINTS PR01607 Apyrase family signature 32 50 2.5E-28 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 PRINTS PR01607 Apyrase family signature 439 462 2.5E-28 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 Gene3D G3DSA:3.90.780.10 416 598 4.9E-53 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 SUPERFAMILY SSF55816 365 608 4.58E-39 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 TIGRFAM TIGR01390 CycNucDiestase: 2',3'-cyclic-nucleotide 2'-phosphodiesterase 33 658 0.0 T 11-10-2018 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase GO:0008663|GO:0009117 KEGG: 00230+3.1.4.16+3.1.3.6|KEGG: 00240+3.1.4.16+3.1.3.6 APJL_0637 d41b0a34c0963a87830a02e866159ac8 658 Gene3D G3DSA:3.60.21.10 28 364 1.1E-126 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APJL_0034 ba6c255db4e4b311863e2002435161c8 194 Gene3D G3DSA:3.40.50.1470 1 194 2.6E-72 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 APJL_0034 ba6c255db4e4b311863e2002435161c8 194 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 APJL_0034 ba6c255db4e4b311863e2002435161c8 194 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 183 35.895 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APJL_0034 ba6c255db4e4b311863e2002435161c8 194 Pfam PF01195 Peptidyl-tRNA hydrolase 6 190 3.4E-54 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APJL_0034 ba6c255db4e4b311863e2002435161c8 194 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 4 190 1.7E-68 T 11-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 APJL_0034 ba6c255db4e4b311863e2002435161c8 194 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 11-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 APJL_0034 ba6c255db4e4b311863e2002435161c8 194 SUPERFAMILY SSF53178 4 193 1.57E-67 T 11-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 APJL_1438 bec2f0fe752820b1d602413894755ffb 406 SUPERFAMILY SSF116734 239 405 2.29E-31 T 11-10-2018 APJL_1438 bec2f0fe752820b1d602413894755ffb 406 Gene3D G3DSA:3.90.220.20 2 182 7.4E-36 T 11-10-2018 APJL_1438 bec2f0fe752820b1d602413894755ffb 406 Gene3D G3DSA:3.90.220.20 235 405 7.1E-31 T 11-10-2018 APJL_1438 bec2f0fe752820b1d602413894755ffb 406 SUPERFAMILY SSF116734 7 191 2.29E-35 T 11-10-2018 APJL_1438 bec2f0fe752820b1d602413894755ffb 406 Pfam PF01420 Type I restriction modification DNA specificity domain 305 401 2.0E-13 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APJL_1438 bec2f0fe752820b1d602413894755ffb 406 Pfam PF01420 Type I restriction modification DNA specificity domain 13 156 7.1E-17 T 11-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 APJL_0939 06140cc75e7ccf15b534786ee834e9f4 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 7.5E-38 T 11-10-2018 IPR016092 FeS cluster insertion protein GO:0005198|GO:0051536|GO:0097428 Reactome: R-HSA-1362409 APJL_0939 06140cc75e7ccf15b534786ee834e9f4 107 SUPERFAMILY SSF89360 1 96 3.79E-34 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APJL_0939 06140cc75e7ccf15b534786ee834e9f4 107 Gene3D G3DSA:2.60.300.12 2 107 1.7E-38 T 11-10-2018 IPR035903 HesB-like domain superfamily Reactome: R-HSA-1362409 APJL_0939 06140cc75e7ccf15b534786ee834e9f4 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 11-10-2018 IPR017870 FeS cluster insertion, C-terminal, conserved site Reactome: R-HSA-1362409 APJL_0939 06140cc75e7ccf15b534786ee834e9f4 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 3.5E-58 T 11-10-2018 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0051536|GO:0097428 APJL_0939 06140cc75e7ccf15b534786ee834e9f4 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 9.1E-26 T 11-10-2018 IPR000361 FeS cluster biogenesis Reactome: R-HSA-1362409 APJL_1899 aa9620f2fe99c4b2723931cf59c1d89f 366 Pfam PF01841 Transglutaminase-like superfamily 152 278 2.6E-25 T 11-10-2018 IPR002931 Transglutaminase-like APJL_1899 aa9620f2fe99c4b2723931cf59c1d89f 366 Gene3D G3DSA:3.10.620.30 114 305 4.0E-21 T 11-10-2018 APJL_1899 aa9620f2fe99c4b2723931cf59c1d89f 366 SMART SM00460 199 281 5.5E-19 T 11-10-2018 IPR002931 Transglutaminase-like APJL_1899 aa9620f2fe99c4b2723931cf59c1d89f 366 SUPERFAMILY SSF54001 123 280 1.54E-23 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APJL_0361 5f75ca79979842e605bbcf977534a7da 502 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 11-10-2018 IPR002178 PTS EIIA type-2 domain APJL_0361 5f75ca79979842e605bbcf977534a7da 502 Pfam PF00381 PTS HPr component phosphorylation site 415 496 1.1E-21 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_0361 5f75ca79979842e605bbcf977534a7da 502 Pfam PF00381 PTS HPr component phosphorylation site 288 367 1.2E-21 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_0361 5f75ca79979842e605bbcf977534a7da 502 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 296 303 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site APJL_0361 5f75ca79979842e605bbcf977534a7da 502 PRINTS PR00107 Phosphocarrier protein signature 453 468 1.6E-13 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_0361 5f75ca79979842e605bbcf977534a7da 502 PRINTS PR00107 Phosphocarrier protein signature 296 312 1.6E-13 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_0361 5f75ca79979842e605bbcf977534a7da 502 PRINTS PR00107 Phosphocarrier protein signature 468 485 1.6E-13 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_0361 5f75ca79979842e605bbcf977534a7da 502 Gene3D G3DSA:3.30.1340.10 286 369 7.4E-23 T 11-10-2018 IPR035895 HPr-like superfamily APJL_0361 5f75ca79979842e605bbcf977534a7da 502 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 416 496 1.5E-18 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_0361 5f75ca79979842e605bbcf977534a7da 502 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 288 367 3.6E-20 T 11-10-2018 IPR000032 Phosphocarrier protein HPr-like APJL_0361 5f75ca79979842e605bbcf977534a7da 502 Gene3D G3DSA:3.40.930.10 1 143 1.3E-37 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_0361 5f75ca79979842e605bbcf977534a7da 502 Gene3D G3DSA:3.30.1340.10 414 502 2.5E-23 T 11-10-2018 IPR035895 HPr-like superfamily APJL_0361 5f75ca79979842e605bbcf977534a7da 502 PIRSF PIRSF000690 1 502 8.1E-194 T 11-10-2018 IPR016258 Multiphosphoryl transfer protein FruB APJL_0361 5f75ca79979842e605bbcf977534a7da 502 SUPERFAMILY SSF55804 148 264 1.12E-6 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_0361 5f75ca79979842e605bbcf977534a7da 502 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 454 469 - T 11-10-2018 IPR002114 Phosphotransferase system, HPr serine phosphorylation site APJL_0361 5f75ca79979842e605bbcf977534a7da 502 SUPERFAMILY SSF55804 4 141 1.31E-36 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_0361 5f75ca79979842e605bbcf977534a7da 502 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 4 140 1.3E-28 T 11-10-2018 IPR002178 PTS EIIA type-2 domain APJL_0361 5f75ca79979842e605bbcf977534a7da 502 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 425 432 - T 11-10-2018 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site APJL_0361 5f75ca79979842e605bbcf977534a7da 502 SUPERFAMILY SSF55594 288 373 8.9E-21 T 11-10-2018 IPR035895 HPr-like superfamily APJL_0361 5f75ca79979842e605bbcf977534a7da 502 SUPERFAMILY SSF55594 415 502 2.49E-22 T 11-10-2018 IPR035895 HPr-like superfamily APJL_1667 49b8883f07396fa8b1eddd976c26561a 330 SUPERFAMILY SSF53756 13 320 1.61E-16 T 11-10-2018 APJL_1667 49b8883f07396fa8b1eddd976c26561a 330 Gene3D G3DSA:3.40.50.2000 155 321 1.6E-11 T 11-10-2018 APJL_1281 8e3a56989d90b8d50720f59cdf359e24 163 Pfam PF10263 SprT-like family 15 112 2.3E-19 T 11-10-2018 IPR006640 SprT-like APJL_1281 8e3a56989d90b8d50720f59cdf359e24 163 Pfam PF17283 SprT-like zinc ribbon domain 119 159 4.4E-11 T 11-10-2018 IPR035240 SprT-like, zinc ribbon domain APJL_1281 8e3a56989d90b8d50720f59cdf359e24 163 SMART SM00731 10 159 1.4E-55 T 11-10-2018 IPR006640 SprT-like APJL_1281 8e3a56989d90b8d50720f59cdf359e24 163 Hamap MF_00746 Protein SprT [sprT]. 6 159 40.725 T 11-10-2018 IPR023483 Uncharacterised protein family SprT APJL_0812 98a9f326b4fdee11089f61423fb4f956 74 Gene3D G3DSA:1.10.287.1040 2 74 3.3E-22 T 11-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 APJL_0812 98a9f326b4fdee11089f61423fb4f956 74 Pfam PF02609 Exonuclease VII small subunit 9 60 1.1E-18 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APJL_0812 98a9f326b4fdee11089f61423fb4f956 74 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 49 3.0E-16 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APJL_0812 98a9f326b4fdee11089f61423fb4f956 74 PIRSF PIRSF006488 1 73 3.9E-21 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APJL_0812 98a9f326b4fdee11089f61423fb4f956 74 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 8 68 15.062 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APJL_0812 98a9f326b4fdee11089f61423fb4f956 74 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 8 63 4.6E-21 T 11-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 APJL_0812 98a9f326b4fdee11089f61423fb4f956 74 SUPERFAMILY SSF116842 3 68 4.05E-19 T 11-10-2018 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 Gene3D G3DSA:3.30.1360.30 272 421 7.6E-195 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 Gene3D G3DSA:3.30.930.10 119 579 7.6E-195 T 11-10-2018 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 Pfam PF01336 OB-fold nucleic acid binding domain 19 100 4.3E-15 T 11-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 SUPERFAMILY SSF50249 2 106 8.76E-33 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 2 585 32.875 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 SUPERFAMILY SSF55261 289 420 1.14E-45 T 11-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 SUPERFAMILY SSF55681 109 584 3.58E-105 T 11-10-2018 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 559 4.0E-105 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 Pfam PF02938 GAD domain 308 407 1.7E-31 T 11-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 587 2.7E-271 T 11-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 3.0E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 221 3.0E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 3.0E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 191 203 3.0E-26 T 11-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1169 adb047c52706cf8f511251ea7bd67f2d 591 Gene3D G3DSA:2.40.50.140 1 108 5.2E-34 T 11-10-2018 APJL_0782 c2a147d22c0e1c2771860e2de2afa5ad 228 TIGRFAM TIGR00659 TIGR00659: TIGR00659 family protein 2 223 4.6E-76 T 11-10-2018 IPR005261 Conserved hypothetical protein CHP00659 APJL_0782 c2a147d22c0e1c2771860e2de2afa5ad 228 Pfam PF04172 LrgB-like family 9 221 3.5E-65 T 11-10-2018 IPR007300 CidB/LrgB family APJL_1516 96ba9bb09961857b3f4130066420e386 451 Gene3D G3DSA:3.20.70.20 2 451 4.6E-179 T 11-10-2018 APJL_1516 96ba9bb09961857b3f4130066420e386 451 Hamap MF_01221 UPF0210 protein . 3 451 52.671 T 11-10-2018 IPR007841 Uncharacterised protein family UPF0210 APJL_1516 96ba9bb09961857b3f4130066420e386 451 SUPERFAMILY SSF51998 4 446 2.2E-175 T 11-10-2018 APJL_1516 96ba9bb09961857b3f4130066420e386 451 Pfam PF05167 Uncharacterised ACR (DUF711) 14 415 6.8E-174 T 11-10-2018 IPR007841 Uncharacterised protein family UPF0210 APJL_0303 cd66ff54bac3b495633d84b2e2016b56 371 SUPERFAMILY SSF52540 5 231 1.51E-5 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1633 d136c707e9b3357bdf175dcccfad537a 155 Gene3D G3DSA:3.40.1280.10 1 155 4.3E-54 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APJL_1633 d136c707e9b3357bdf175dcccfad537a 155 PIRSF PIRSF004505 1 154 7.6E-43 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 APJL_1633 d136c707e9b3357bdf175dcccfad537a 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 27.475 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 APJL_1633 d136c707e9b3357bdf175dcccfad537a 155 Pfam PF02590 Predicted SPOUT methyltransferase 1 153 2.1E-48 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 APJL_1633 d136c707e9b3357bdf175dcccfad537a 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 2 155 1.1E-85 T 11-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 APJL_1633 d136c707e9b3357bdf175dcccfad537a 155 SUPERFAMILY SSF75217 1 153 1.94E-51 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APJL_1934 28dce1692806f9cee87973b04c62b8f1 148 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 134 1.0E-59 T 11-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 APJL_1934 28dce1692806f9cee87973b04c62b8f1 148 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 29.791 T 11-10-2018 IPR009390 Macrodomain Ter protein, MatP GO:0043565 APJL_1934 28dce1692806f9cee87973b04c62b8f1 148 Gene3D G3DSA:1.10.1220.10 98 148 6.4E-9 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APJL_1934 28dce1692806f9cee87973b04c62b8f1 148 Pfam PF17414 MatP C-terminal ribbon-helix-helix domain 88 147 6.7E-26 T 11-10-2018 IPR035375 MatP, C-terminal ribbon-helix-helix domain APJL_1934 28dce1692806f9cee87973b04c62b8f1 148 Gene3D G3DSA:1.20.1270.380 1 89 1.6E-33 T 11-10-2018 IPR038339 MatP, N-terminal domain superfamily APJL_1934 28dce1692806f9cee87973b04c62b8f1 148 Pfam PF06303 MatP N-terminal domain 2 85 6.4E-38 T 11-10-2018 IPR035087 MatP, N-terminal APJL_0713 4ac0c1a67df15570ab971bbf219673ec 493 SUPERFAMILY SSF48024 22 132 1.57E-38 T 11-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 APJL_0713 4ac0c1a67df15570ab971bbf219673ec 493 Pfam PF03796 DnaB-like helicase C terminal domain 203 477 1.4E-107 T 11-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 APJL_0713 4ac0c1a67df15570ab971bbf219673ec 493 Gene3D G3DSA:3.40.50.300 180 480 4.3E-102 T 11-10-2018 APJL_0713 4ac0c1a67df15570ab971bbf219673ec 493 SUPERFAMILY SSF52540 201 470 3.32E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0713 4ac0c1a67df15570ab971bbf219673ec 493 Gene3D G3DSA:1.10.860.10 15 179 4.3E-54 T 11-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal APJL_0713 4ac0c1a67df15570ab971bbf219673ec 493 Pfam PF00772 DnaB-like helicase N terminal domain 23 124 2.6E-36 T 11-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 APJL_0713 4ac0c1a67df15570ab971bbf219673ec 493 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 23 479 7.8E-170 T 11-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 SMART SM00363 1 61 5.8E-11 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 SUPERFAMILY SSF55174 1 57 1.13E-12 T 11-10-2018 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 7.5E-56 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 Gene3D G3DSA:3.10.290.10 1 57 6.4E-19 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 Gene3D G3DSA:3.30.70.1560 128 209 2.3E-61 T 11-10-2018 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 Gene3D G3DSA:3.30.70.580 62 227 2.3E-61 T 11-10-2018 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 SUPERFAMILY SSF55120 61 227 2.72E-43 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 Pfam PF01479 S4 domain 1 47 3.0E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 Pfam PF00849 RNA pseudouridylate synthase 62 192 2.3E-15 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0371 f555919795930bd0ebf3cbba70642bfe 230 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 APJL_1374 6dc1a3eef3d16d1c3abece0b855e80c0 320 Gene3D G3DSA:1.20.58.1130 9 203 1.0E-91 T 11-10-2018 APJL_1374 6dc1a3eef3d16d1c3abece0b855e80c0 320 Pfam PF01699 Sodium/calcium exchanger protein 6 144 1.8E-24 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 APJL_1374 6dc1a3eef3d16d1c3abece0b855e80c0 320 Pfam PF01699 Sodium/calcium exchanger protein 172 316 7.1E-35 T 11-10-2018 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 APJL_1374 6dc1a3eef3d16d1c3abece0b855e80c0 320 Gene3D G3DSA:1.20.1420.30 35 309 1.0E-91 T 11-10-2018 APJL_1374 6dc1a3eef3d16d1c3abece0b855e80c0 320 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 6 311 8.2E-79 T 11-10-2018 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 APJL_1170 e84c21ceff4f2ea708d7b033280129ca 134 SUPERFAMILY SSF55811 2 125 1.76E-22 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_1170 e84c21ceff4f2ea708d7b033280129ca 134 PRINTS PR01404 DATP pyrophosphohydrolase signature 77 98 7.6E-21 T 11-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 APJL_1170 e84c21ceff4f2ea708d7b033280129ca 134 PRINTS PR01404 DATP pyrophosphohydrolase signature 104 117 7.6E-21 T 11-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 APJL_1170 e84c21ceff4f2ea708d7b033280129ca 134 PRINTS PR01404 DATP pyrophosphohydrolase signature 49 68 7.6E-21 T 11-10-2018 IPR003564 Dihydroneopterin triphosphate diphosphatase GO:0008828|GO:0019177|GO:0046656 KEGG: 00790+3.6.1.67|MetaCyc: PWY-6147 APJL_1170 e84c21ceff4f2ea708d7b033280129ca 134 Gene3D G3DSA:3.90.79.10 1 123 2.2E-36 T 11-10-2018 APJL_1170 e84c21ceff4f2ea708d7b033280129ca 134 ProSitePatterns PS00893 Nudix box signature. 16 37 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APJL_1170 e84c21ceff4f2ea708d7b033280129ca 134 Pfam PF00293 NUDIX domain 2 114 6.4E-16 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APJL_1708 1d32c904d860083da919aaefc340b783 201 SUPERFAMILY SSF89155 4 200 4.32E-51 T 11-10-2018 IPR036411 TorD-like superfamily APJL_1708 1d32c904d860083da919aaefc340b783 201 PIRSF PIRSF004690 1 201 7.6E-65 T 11-10-2018 IPR026269 Tat proofreading chaperone DmsD-type APJL_1708 1d32c904d860083da919aaefc340b783 201 Pfam PF02613 Nitrate reductase delta subunit 42 158 1.3E-20 T 11-10-2018 IPR020945 DMSO/Nitrate reductase chaperone APJL_1708 1d32c904d860083da919aaefc340b783 201 Gene3D G3DSA:1.10.3480.10 4 201 2.1E-49 T 11-10-2018 APJL_1708 1d32c904d860083da919aaefc340b783 201 Hamap MF_00940 Tat proofreading chaperone DmsD [dmsD]. 4 201 40.919 T 11-10-2018 IPR028611 Tat proofreading chaperone DmsD GO:0005048 APJL_1270 1da6f978839f0e8f8777ee6f7672ced6 283 SUPERFAMILY SSF161098 31 274 7.09E-31 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1270 1da6f978839f0e8f8777ee6f7672ced6 283 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 17 279 3.3E-80 T 11-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 APJL_1270 1da6f978839f0e8f8777ee6f7672ced6 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 277 2.1E-21 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1270 1da6f978839f0e8f8777ee6f7672ced6 283 Gene3D G3DSA:1.10.3720.10 64 279 1.3E-25 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0369 ef442c7a88db3f870e129858f7d5c09c 320 SUPERFAMILY SSF51604 120 298 4.85E-42 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APJL_0369 ef442c7a88db3f870e129858f7d5c09c 320 Gene3D G3DSA:3.20.20.120 95 290 5.9E-103 T 11-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily APJL_0369 ef442c7a88db3f870e129858f7d5c09c 320 Gene3D G3DSA:3.30.390.10 4 297 5.9E-103 T 11-10-2018 IPR029017 Enolase-like, N-terminal APJL_0369 ef442c7a88db3f870e129858f7d5c09c 320 SUPERFAMILY SSF54826 1 95 5.5E-25 T 11-10-2018 APJL_0369 ef442c7a88db3f870e129858f7d5c09c 320 Pfam PF13378 Enolase C-terminal domain-like 128 274 1.3E-10 T 11-10-2018 IPR029065 Enolase C-terminal domain-like APJL_0369 ef442c7a88db3f870e129858f7d5c09c 320 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 301 2.6E-86 T 11-10-2018 APJL_0369 ef442c7a88db3f870e129858f7d5c09c 320 SMART SM00922 112 205 1.8E-7 T 11-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal APJL_1055 4451ff94286b6e04e351177bfe34555b 274 Pfam PF01226 Formate/nitrite transporter 7 268 1.8E-75 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 APJL_1055 4451ff94286b6e04e351177bfe34555b 274 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 160 170 - T 11-10-2018 IPR024002 Formate/nitrite transporter, conserved site APJL_1055 4451ff94286b6e04e351177bfe34555b 274 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 6 271 6.6E-130 T 11-10-2018 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 APJL_1055 4451ff94286b6e04e351177bfe34555b 274 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 75 84 - T 11-10-2018 IPR024002 Formate/nitrite transporter, conserved site APJL_1055 4451ff94286b6e04e351177bfe34555b 274 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 18 271 7.0E-89 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 APJL_1055 4451ff94286b6e04e351177bfe34555b 274 Gene3D G3DSA:1.20.1080.10 1 260 3.7E-96 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APJL_0602 5bdc0f0acf7aab8f43a30dc2fc7a895a 328 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 22 88 3.1E-25 T 11-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 APJL_0602 5bdc0f0acf7aab8f43a30dc2fc7a895a 328 SUPERFAMILY SSF55681 93 328 1.77E-80 T 11-10-2018 APJL_0602 5bdc0f0acf7aab8f43a30dc2fc7a895a 328 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 328 1.5E-115 T 11-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 APJL_0602 5bdc0f0acf7aab8f43a30dc2fc7a895a 328 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 327 47.874 T 11-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 APJL_0602 5bdc0f0acf7aab8f43a30dc2fc7a895a 328 SUPERFAMILY SSF46589 21 100 3.19E-19 T 11-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 APJL_0602 5bdc0f0acf7aab8f43a30dc2fc7a895a 328 Pfam PF01409 tRNA synthetases class II core domain (F) 93 327 3.4E-103 T 11-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 APJL_0602 5bdc0f0acf7aab8f43a30dc2fc7a895a 328 Gene3D G3DSA:3.30.930.10 8 328 5.7E-120 T 11-10-2018 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 31 261 4.6E-96 T 11-10-2018 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 Gene3D G3DSA:3.40.710.10 14 280 3.8E-88 T 11-10-2018 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 SMART SM00936 281 372 6.6E-32 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 Gene3D G3DSA:2.60.410.10 281 372 8.6E-26 T 11-10-2018 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 SUPERFAMILY SSF69189 281 374 1.0E-24 T 11-10-2018 IPR015956 Penicillin-binding protein, C-terminal domain superfamily GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 281 372 1.5E-24 T 11-10-2018 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 SUPERFAMILY SSF56601 9 281 1.06E-75 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 146 159 1.5E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 119 136 1.5E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APJL_1629 4ddc02a78c30155f9714560650f87c1f 392 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 63 74 1.5E-17 T 11-10-2018 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 APJL_0517 45f3bd35c850a3783831dda4e62276f3 95 Pfam PF01386 Ribosomal L25p family 6 92 2.9E-25 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 APJL_0517 45f3bd35c850a3783831dda4e62276f3 95 SUPERFAMILY SSF50715 3 94 5.76E-31 T 11-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0517 45f3bd35c850a3783831dda4e62276f3 95 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 4 94 3.0E-44 T 11-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 APJL_0517 45f3bd35c850a3783831dda4e62276f3 95 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 3 95 27.665 T 11-10-2018 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 APJL_0517 45f3bd35c850a3783831dda4e62276f3 95 Gene3D G3DSA:2.40.240.10 2 95 1.3E-33 T 11-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 APJL_0966 ceead20570f2bc0cc70483badaaaa147 190 Pfam PF03412 Peptidase C39 family 4 129 1.4E-29 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APJL_0966 ceead20570f2bc0cc70483badaaaa147 190 Gene3D G3DSA:3.90.70.10 8 137 9.3E-29 T 11-10-2018 APJL_1054 842ff1d6e19b461929669ec7797ce544 770 PIRSF PIRSF000379 8 770 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 APJL_1054 842ff1d6e19b461929669ec7797ce544 770 Pfam PF01228 Glycine radical 640 751 2.0E-42 T 11-10-2018 IPR001150 Glycine radical domain GO:0003824 APJL_1054 842ff1d6e19b461929669ec7797ce544 770 Gene3D G3DSA:3.20.70.20 2 770 0.0 T 11-10-2018 APJL_1054 842ff1d6e19b461929669ec7797ce544 770 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 11 770 0.0 T 11-10-2018 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 APJL_1054 842ff1d6e19b461929669ec7797ce544 770 Pfam PF02901 Pyruvate formate lyase-like 24 624 6.4E-205 T 11-10-2018 IPR004184 Pyruvate formate lyase domain GO:0003824 APJL_1054 842ff1d6e19b461929669ec7797ce544 770 SUPERFAMILY SSF51998 5 769 2.04E-290 T 11-10-2018 APJL_1054 842ff1d6e19b461929669ec7797ce544 770 ProSitePatterns PS00850 Glycine radical domain signature. 740 748 - T 11-10-2018 IPR019777 Formate C-acetyltransferase glycine radical, conserved site APJL_1644 6f8e37c7477a106e74fd95adc8f6a0a9 270 Pfam PF01774 UreD urease accessory protein 48 250 6.6E-41 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 APJL_1644 6f8e37c7477a106e74fd95adc8f6a0a9 270 Hamap MF_01384 Urease accessory protein UreD [ureD]. 1 264 22.127 T 11-10-2018 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 APJL_0172 ee6e8bd1aa7a969d71c2421114c7ba37 228 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 26 228 2.4E-83 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 APJL_0172 ee6e8bd1aa7a969d71c2421114c7ba37 228 Pfam PF02508 Rnf-Nqr subunit, membrane protein 25 218 1.2E-64 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 APJL_0172 ee6e8bd1aa7a969d71c2421114c7ba37 228 PIRSF PIRSF006102 21 228 1.1E-74 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 APJL_0172 ee6e8bd1aa7a969d71c2421114c7ba37 228 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 19 228 26.694 T 11-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 APJL_1467 b69e85090707541920286981e4983c7e 170 Gene3D G3DSA:1.20.120.20 11 170 2.8E-5 T 11-10-2018 APJL_1110 61c6535f858ecdacf064ae07b0a3af0a 377 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 35 348 3.0E-32 T 11-10-2018 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 APJL_1110 61c6535f858ecdacf064ae07b0a3af0a 377 SUPERFAMILY SSF51445 35 357 2.4E-71 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APJL_1110 61c6535f858ecdacf064ae07b0a3af0a 377 PRINTS PR00738 Glycosyl hydrolase family 20 signature 54 75 6.5E-15 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 APJL_1110 61c6535f858ecdacf064ae07b0a3af0a 377 PRINTS PR00738 Glycosyl hydrolase family 20 signature 117 134 6.5E-15 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 APJL_1110 61c6535f858ecdacf064ae07b0a3af0a 377 PRINTS PR00738 Glycosyl hydrolase family 20 signature 163 181 6.5E-15 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 APJL_1110 61c6535f858ecdacf064ae07b0a3af0a 377 PRINTS PR00738 Glycosyl hydrolase family 20 signature 187 200 6.5E-15 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 APJL_1110 61c6535f858ecdacf064ae07b0a3af0a 377 PRINTS PR00738 Glycosyl hydrolase family 20 signature 336 352 6.5E-15 T 11-10-2018 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 APJL_1110 61c6535f858ecdacf064ae07b0a3af0a 377 Gene3D G3DSA:3.20.20.80 20 377 6.3E-112 T 11-10-2018 APJL_0110 c0617257fab8a7e9505d87a32c52386f 191 SUPERFAMILY SSF100950 8 188 2.37E-47 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_0110 c0617257fab8a7e9505d87a32c52386f 191 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 9 187 1.4E-49 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase APJL_0110 c0617257fab8a7e9505d87a32c52386f 191 PIRSF PIRSF006806 4 190 3.1E-40 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase APJL_0110 c0617257fab8a7e9505d87a32c52386f 191 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 10 187 2.0E-37 T 11-10-2018 IPR002698 5-formyltetrahydrofolate cyclo-ligase APJL_0110 c0617257fab8a7e9505d87a32c52386f 191 Gene3D G3DSA:3.40.50.10420 1 190 1.7E-47 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily APJL_1383 e97211f09ab587cef4e777ead5ffe0a5 195 Pfam PF04972 BON domain 129 193 3.0E-16 T 11-10-2018 IPR007055 BON domain APJL_1383 e97211f09ab587cef4e777ead5ffe0a5 195 Pfam PF04972 BON domain 50 117 4.9E-13 T 11-10-2018 IPR007055 BON domain APJL_1383 e97211f09ab587cef4e777ead5ffe0a5 195 SMART SM00749 55 118 9.3E-12 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria APJL_1383 e97211f09ab587cef4e777ead5ffe0a5 195 SMART SM00749 133 195 8.6E-9 T 11-10-2018 IPR014004 Transport-associated and nodulation domain, bacteria APJL_0088 bcf5200329614e9e5d9eca4999dc9cc3 231 Pfam PF00849 RNA pseudouridylate synthase 41 186 1.9E-17 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0088 bcf5200329614e9e5d9eca4999dc9cc3 231 SUPERFAMILY SSF55120 29 228 1.54E-48 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0088 bcf5200329614e9e5d9eca4999dc9cc3 231 Gene3D G3DSA:3.30.70.1560 105 205 8.5E-38 T 11-10-2018 APJL_0088 bcf5200329614e9e5d9eca4999dc9cc3 231 Gene3D G3DSA:3.30.70.580 30 104 2.4E-29 T 11-10-2018 APJL_0088 bcf5200329614e9e5d9eca4999dc9cc3 231 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 45 216 1.0E-56 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 APJL_0088 bcf5200329614e9e5d9eca4999dc9cc3 231 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 76 90 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 APJL_0463 bcd90bc28f707488c16203f7caf6ec6a 162 PIRSF PIRSF018472 1 162 2.7E-44 T 11-10-2018 IPR026034 Cell shape-determining protein MreD, proteobacterial type APJL_0463 bcd90bc28f707488c16203f7caf6ec6a 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 8 153 9.6E-34 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 APJL_0463 bcd90bc28f707488c16203f7caf6ec6a 162 Pfam PF04093 rod shape-determining protein MreD 6 154 1.4E-39 T 11-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 Pfam PF01037 Lrp/AsnC ligand binding domain 76 150 6.8E-25 T 11-10-2018 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 10 56 1.0E-19 T 11-10-2018 APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 Gene3D G3DSA:1.10.10.10 1 61 7.0E-27 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 10 26 5.9E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 26 37 5.9E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 37 56 5.9E-19 T 11-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 SMART SM00344 10 119 1.3E-48 T 11-10-2018 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 SUPERFAMILY SSF46785 9 68 3.24E-17 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 SUPERFAMILY SSF54909 72 156 8.85E-22 T 11-10-2018 IPR011008 Dimeric alpha-beta barrel APJL_0612 fa9792524b044e00e17dcd0e3d0fe889 160 Gene3D G3DSA:3.30.70.920 62 156 7.6E-25 T 11-10-2018 APJL_1630 9d62d0df6fcb7962c13bf38296c7c105 187 Hamap MF_02071 Endolytic peptidoglycan transglycosylase RlpA [rlpA]. 22 174 23.878 T 11-10-2018 IPR034718 Endolytic peptidoglycan transglycosylase RlpA GO:0016829 APJL_1630 9d62d0df6fcb7962c13bf38296c7c105 187 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 84 183 5.7E-45 T 11-10-2018 IPR012997 Rare lipoprotein A APJL_1630 9d62d0df6fcb7962c13bf38296c7c105 187 Gene3D G3DSA:2.40.40.10 81 175 1.3E-39 T 11-10-2018 IPR036908 RlpA-like domain superfamily APJL_1630 9d62d0df6fcb7962c13bf38296c7c105 187 SUPERFAMILY SSF50685 78 170 2.76E-15 T 11-10-2018 IPR036908 RlpA-like domain superfamily APJL_1630 9d62d0df6fcb7962c13bf38296c7c105 187 Pfam PF03330 Lytic transglycolase 83 170 1.1E-25 T 11-10-2018 IPR009009 RlpA-like protein, double-psi beta-barrel domain APJL_2004 3f9226cc40add847223ed871f216f8a1 414 Gene3D G3DSA:2.40.160.90 294 399 7.8E-15 T 11-10-2018 APJL_2004 3f9226cc40add847223ed871f216f8a1 414 Pfam PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B 317 393 1.1E-8 T 11-10-2018 IPR001677 Transferrin-binding protein, C-lobe/N-lobe beta barrel domain APJL_2004 3f9226cc40add847223ed871f216f8a1 414 SUPERFAMILY SSF56925 275 393 7.85E-13 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_2090 d02fa2ad7f84dd0cc62323c141191dce 316 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 225 241 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APJL_2090 d02fa2ad7f84dd0cc62323c141191dce 316 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 196 218 - T 11-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site APJL_2090 d02fa2ad7f84dd0cc62323c141191dce 316 Gene3D G3DSA:3.40.50.720 28 312 4.4E-107 T 11-10-2018 APJL_2090 d02fa2ad7f84dd0cc62323c141191dce 316 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 290 5.8E-54 T 11-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 APJL_2090 d02fa2ad7f84dd0cc62323c141191dce 316 Gene3D G3DSA:3.40.50.720 98 289 4.4E-107 T 11-10-2018 APJL_2090 d02fa2ad7f84dd0cc62323c141191dce 316 SUPERFAMILY SSF52283 25 121 9.64E-30 T 11-10-2018 APJL_2090 d02fa2ad7f84dd0cc62323c141191dce 316 SUPERFAMILY SSF51735 102 291 2.54E-51 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_2090 d02fa2ad7f84dd0cc62323c141191dce 316 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 32 314 2.8E-23 T 11-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 APJL_0689 511ba8ee372bba05bb7b65365fc9e463 158 SUPERFAMILY SSF55040 11 155 1.27E-61 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_0689 511ba8ee372bba05bb7b65365fc9e463 158 Gene3D G3DSA:3.30.70.640 1 158 2.9E-70 T 11-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_0689 511ba8ee372bba05bb7b65365fc9e463 158 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 2.9E-72 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_0689 511ba8ee372bba05bb7b65365fc9e463 158 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 35.935 T 11-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_0689 511ba8ee372bba05bb7b65365fc9e463 158 Pfam PF01967 MoaC family 15 150 7.4E-56 T 11-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 SMART SM00830 9 91 6.2E-24 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 SUPERFAMILY SSF55021 280 378 6.11E-25 T 11-10-2018 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 Gene3D G3DSA:3.40.190.10 189 274 7.2E-51 T 11-10-2018 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 PIRSF PIRSF001500 1 380 1.0E-137 T 11-10-2018 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 261 283 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 Pfam PF01817 Chorismate mutase type II 9 89 2.7E-15 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 SUPERFAMILY SSF53850 105 291 2.06E-50 T 11-10-2018 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 Gene3D G3DSA:1.20.59.10 2 107 6.6E-32 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 Gene3D G3DSA:3.30.70.260 291 378 4.6E-26 T 11-10-2018 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 Gene3D G3DSA:3.40.190.10 108 281 7.2E-51 T 11-10-2018 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 325 332 - T 11-10-2018 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 SUPERFAMILY SSF48600 4 93 3.85E-20 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 5 89 3.9E-37 T 11-10-2018 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 APJL_1051 513a5c4ced912034a8d1d3b3a324fff0 385 Pfam PF00800 Prephenate dehydratase 106 286 7.6E-54 T 11-10-2018 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 APJL_0122 2494eb62c655454259463b32e3ea2d3f 521 Pfam PF03734 L,D-transpeptidase catalytic domain 285 450 7.7E-30 T 11-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 APJL_0122 2494eb62c655454259463b32e3ea2d3f 521 SUPERFAMILY SSF141523 285 443 5.23E-19 T 11-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like APJL_1350 d59589f38d4cfc8966d64d49fc961a02 345 Gene3D G3DSA:3.30.70.20 33 176 8.3E-49 T 11-10-2018 APJL_1350 d59589f38d4cfc8966d64d49fc961a02 345 SUPERFAMILY SSF54862 37 334 3.85E-71 T 11-10-2018 APJL_1350 d59589f38d4cfc8966d64d49fc961a02 345 Gene3D G3DSA:3.30.70.20 36 227 8.3E-49 T 11-10-2018 APJL_1350 d59589f38d4cfc8966d64d49fc961a02 345 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1350 d59589f38d4cfc8966d64d49fc961a02 345 Pfam PF13247 4Fe-4S dicluster domain 106 206 5.3E-23 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1232 e6d8bfbb9bf111b0456ffa41125dd5b9 174 Pfam PF00258 Flavodoxin 6 160 3.8E-29 T 11-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 APJL_1232 e6d8bfbb9bf111b0456ffa41125dd5b9 174 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-10-2018 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 APJL_1232 e6d8bfbb9bf111b0456ffa41125dd5b9 174 SUPERFAMILY SSF52218 4 170 1.59E-50 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1232 e6d8bfbb9bf111b0456ffa41125dd5b9 174 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 3.8E-69 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 APJL_1232 e6d8bfbb9bf111b0456ffa41125dd5b9 174 PIRSF PIRSF038996 1 172 2.4E-65 T 11-10-2018 IPR010086 Flavodoxin, long chain GO:0010181 APJL_1232 e6d8bfbb9bf111b0456ffa41125dd5b9 174 Gene3D G3DSA:3.40.50.360 2 174 7.0E-54 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 48 292 9.3E-83 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 20 303 27.262 T 11-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 SUPERFAMILY SSF82866 83 293 3.27E-34 T 11-10-2018 APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 PRINTS PR01755 Bacterial translocase SecF protein signature 47 62 1.0E-30 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 PRINTS PR01755 Bacterial translocase SecF protein signature 160 174 1.0E-30 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 PRINTS PR01755 Bacterial translocase SecF protein signature 208 226 1.0E-30 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 PRINTS PR01755 Bacterial translocase SecF protein signature 240 255 1.0E-30 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 Gene3D G3DSA:1.20.1640.10 109 304 3.0E-7 T 11-10-2018 APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 126 289 7.7E-53 T 11-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 Pfam PF07549 SecD/SecF GG Motif 42 69 1.8E-12 T 11-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site APJL_1084 4daf3f18156e1e44e3429a21bb783ebe 324 Pfam PF02355 Protein export membrane protein 120 300 9.0E-67 T 11-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial APJL_1918 5e25644ebf9d3e3cac0e7079efde2901 116 Gene3D G3DSA:3.40.30.10 2 115 6.5E-39 T 11-10-2018 APJL_1918 5e25644ebf9d3e3cac0e7079efde2901 116 Pfam PF03960 ArsC family 6 112 2.8E-17 T 11-10-2018 IPR006660 Arsenate reductase-like APJL_1918 5e25644ebf9d3e3cac0e7079efde2901 116 SUPERFAMILY SSF52833 2 114 1.86E-33 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1918 5e25644ebf9d3e3cac0e7079efde2901 116 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 113 1.5E-28 T 11-10-2018 IPR006504 Transcriptional regulator Spx/MgsR APJL_0914 790fdc4e01f61d8a65eac9b6d33e05b9 262 Pfam PF01416 tRNA pseudouridine synthase 8 102 3.6E-8 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0914 790fdc4e01f61d8a65eac9b6d33e05b9 262 Pfam PF01416 tRNA pseudouridine synthase 145 244 1.9E-29 T 11-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0914 790fdc4e01f61d8a65eac9b6d33e05b9 262 Gene3D G3DSA:3.30.70.660 105 242 1.3E-48 T 11-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 APJL_0914 790fdc4e01f61d8a65eac9b6d33e05b9 262 Gene3D G3DSA:3.30.70.580 1 104 1.1E-37 T 11-10-2018 APJL_0914 790fdc4e01f61d8a65eac9b6d33e05b9 262 PIRSF PIRSF001430 1 257 1.4E-77 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0914 790fdc4e01f61d8a65eac9b6d33e05b9 262 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 238 8.8E-76 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0914 790fdc4e01f61d8a65eac9b6d33e05b9 262 SUPERFAMILY SSF55120 1 254 1.29E-92 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0914 790fdc4e01f61d8a65eac9b6d33e05b9 262 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 243 34.787 T 11-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1514 8e099f45c1ffe83837bfe2faecf1b325 166 SUPERFAMILY SSF52833 1 163 1.46E-41 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1514 8e099f45c1ffe83837bfe2faecf1b325 166 Pfam PF08534 Redoxin 19 162 1.4E-23 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APJL_1514 8e099f45c1ffe83837bfe2faecf1b325 166 Hamap MF_00269 Thiol peroxidase [tpx]. 3 166 37.947 T 11-10-2018 IPR002065 Thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 KEGG: 00480+1.11.1.15 APJL_1514 8e099f45c1ffe83837bfe2faecf1b325 166 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 11-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 APJL_1514 8e099f45c1ffe83837bfe2faecf1b325 166 Gene3D G3DSA:3.40.30.10 1 166 1.5E-45 T 11-10-2018 APJL_0822 866c0d61e930d87d2208ec995bac5e81 365 Gene3D G3DSA:2.40.40.10 68 364 2.8E-131 T 11-10-2018 IPR036908 RlpA-like domain superfamily APJL_0822 866c0d61e930d87d2208ec995bac5e81 365 SMART SM00925 139 268 1.3E-69 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 APJL_0822 866c0d61e930d87d2208ec995bac5e81 365 Pfam PF06725 3D domain 288 365 1.1E-24 T 11-10-2018 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 APJL_0822 866c0d61e930d87d2208ec995bac5e81 365 Pfam PF03562 MltA specific insert domain 109 268 1.6E-43 T 11-10-2018 IPR005300 Lytic transglycosylase MltA, domain B GO:0004553 APJL_0822 866c0d61e930d87d2208ec995bac5e81 365 Gene3D G3DSA:2.40.240.50 139 273 2.8E-131 T 11-10-2018 APJL_0822 866c0d61e930d87d2208ec995bac5e81 365 SUPERFAMILY SSF50685 49 364 4.19E-106 T 11-10-2018 IPR036908 RlpA-like domain superfamily APJL_1195 3285c544d13aef21e00a87452567a979 207 SUPERFAMILY SSF48452 97 194 1.11E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1195 3285c544d13aef21e00a87452567a979 207 PIRSF PIRSF006170 5 207 1.9E-53 T 11-10-2018 IPR026039 Uncharacterised protein family UPF0070 APJL_1195 3285c544d13aef21e00a87452567a979 207 Pfam PF09976 Tetratricopeptide repeat-like domain 18 207 1.2E-50 T 11-10-2018 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038|Reactome: R-HSA-381426|Reactome: R-HSA-6798695|Reactome: R-HSA-8957275 APJL_1195 3285c544d13aef21e00a87452567a979 207 Gene3D G3DSA:1.25.40.10 94 207 1.7E-7 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1049 76e652dd3ccf86f53dc44217f58a66d5 246 Pfam PF02698 DUF218 domain 79 241 3.4E-26 T 11-10-2018 IPR003848 Domain of unknown function DUF218 APJL_1049 76e652dd3ccf86f53dc44217f58a66d5 246 Gene3D G3DSA:3.40.50.620 127 206 3.5E-6 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1351 63976f7d14c63261a3187695fe76a3e6 393 Pfam PF03916 Polysulphide reductase, NrfD 41 326 2.5E-14 T 11-10-2018 IPR005614 NrfD family APJL_0576 9d4c6ff6c3af58c59eb22bf5d7ffd150 579 PIRSF PIRSF004950 14 579 8.5E-189 T 11-10-2018 IPR012159 Inner membrane protein YejM APJL_0576 9d4c6ff6c3af58c59eb22bf5d7ffd150 579 Gene3D G3DSA:3.40.720.10 261 406 2.2E-6 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APJL_0576 9d4c6ff6c3af58c59eb22bf5d7ffd150 579 Gene3D G3DSA:3.40.720.10 407 502 1.9E-13 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APJL_0576 9d4c6ff6c3af58c59eb22bf5d7ffd150 579 SUPERFAMILY SSF53649 267 559 8.64E-33 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APJL_0576 9d4c6ff6c3af58c59eb22bf5d7ffd150 579 Pfam PF00884 Sulfatase 406 493 1.6E-11 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 APJL_0576 9d4c6ff6c3af58c59eb22bf5d7ffd150 579 Pfam PF11893 Domain of unknown function (DUF3413) 15 258 3.0E-100 T 11-10-2018 IPR024588 Inner membrane protein YejM, N-terminal APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 6.6E-19 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 6.6E-19 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 6.6E-19 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 6.6E-19 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 11-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 3.0E-38 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.526 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 Pfam PF01084 Ribosomal protein S18 19 68 1.7E-25 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 2.0E-22 T 11-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 Gene3D G3DSA:4.10.640.10 20 75 4.3E-29 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1190 dddd4b67175557a00c06ca07dbd4be1e 75 SUPERFAMILY SSF46911 3 74 4.84E-30 T 11-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1369 5505e190c32360fb062ebfef3ab72ebe 227 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 216 5.5E-12 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1369 5505e190c32360fb062ebfef3ab72ebe 227 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 7 111 4.8E-13 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APJL_1369 5505e190c32360fb062ebfef3ab72ebe 227 SUPERFAMILY SSF161098 9 205 2.88E-30 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1369 5505e190c32360fb062ebfef3ab72ebe 227 Gene3D G3DSA:1.10.3720.10 1 217 6.6E-40 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 Gene3D G3DSA:3.40.50.2300 8 269 3.4E-85 T 11-10-2018 APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 SUPERFAMILY SSF46689 338 388 2.15E-11 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 Gene3D G3DSA:1.10.10.60 281 392 3.1E-26 T 11-10-2018 APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 338 380 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 Pfam PF12833 Helix-turn-helix domain 309 385 1.6E-16 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 SUPERFAMILY SSF53822 12 299 5.97E-51 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 Gene3D G3DSA:3.40.50.2300 102 278 3.4E-85 T 11-10-2018 APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 SMART SM00342 301 384 3.8E-24 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APJL_1959 894c9eb16f8635bf8c42f09868124c62 393 Pfam PF13377 Periplasmic binding protein-like domain 113 277 1.2E-35 T 11-10-2018 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 12 158 8.9E-63 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 SUPERFAMILY SSF53098 11 163 6.07E-55 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 146 158 1.5E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 91 107 1.5E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 69 85 1.5E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 13 26 1.5E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 115 134 1.5E-43 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 10 161 46.901 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 Gene3D G3DSA:3.30.420.10 10 166 1.2E-50 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 121 155 - T 11-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 APJL_1173 54aa47d661460e05b68cc49966cc09c5 200 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 12 166 2.2E-84 T 11-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 APJL_0801 a646451024c2012ed51407e5f6b7ea4d 320 Gene3D G3DSA:1.10.3720.10 64 310 4.7E-19 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0801 a646451024c2012ed51407e5f6b7ea4d 320 SUPERFAMILY SSF161098 69 301 1.57E-15 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0801 a646451024c2012ed51407e5f6b7ea4d 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 92 311 1.9E-36 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0230 98eae08e4824efd6e4c409c123d85a6c 107 Pfam PF13276 HTH-like domain 35 88 5.1E-17 T 11-10-2018 IPR025948 HTH-like domain APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 SUPERFAMILY SSF55060 161 278 4.22E-35 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 Gene3D G3DSA:3.30.230.10 1 159 5.1E-55 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 PIRSF PIRSF010376 3 279 2.4E-86 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 Pfam PF08544 GHMP kinases C terminal 194 253 8.1E-7 T 11-10-2018 IPR013750 GHMP kinase, C-terminal domain APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 SUPERFAMILY SSF54211 4 156 9.11E-44 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 Pfam PF00288 GHMP kinases N terminal domain 88 144 1.6E-8 T 11-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 5 279 2.1E-105 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 Gene3D G3DSA:3.30.70.890 161 279 1.3E-27 T 11-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily APJL_0779 c6648d7a089c8fdcca527ac80a72618b 285 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 5 271 31.469 T 11-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 SMART SM00898 2 116 5.6E-48 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 SUPERFAMILY SSF81624 2 139 4.71E-39 T 11-10-2018 IPR035937 MutM-like, N-terminal APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 SMART SM01232 130 222 9.8E-45 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 Pfam PF06827 Zinc finger found in FPG and IleRS 243 269 1.6E-8 T 11-10-2018 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 269 5.3E-101 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 Gene3D G3DSA:3.20.190.10 2 129 1.5E-40 T 11-10-2018 IPR035937 MutM-like, N-terminal APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 SUPERFAMILY SSF46946 131 223 3.66E-29 T 11-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 ProSitePatterns PS01242 Zinc finger FPG-type signature. 245 269 - T 11-10-2018 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 Gene3D G3DSA:1.10.8.50 132 270 1.5E-44 T 11-10-2018 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 115 7.3E-31 T 11-10-2018 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 219 3.6E-26 T 11-10-2018 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 SUPERFAMILY SSF57716 218 269 8.99E-17 T 11-10-2018 APJL_2038 29258d664ef5f2dc3247fc89f54c1ada 273 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 270 42.623 T 11-10-2018 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 APJL_0813 98a0e1ee2c9fc5ed1f071e0c1b71fdae 297 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 83 99 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site APJL_0813 98a0e1ee2c9fc5ed1f071e0c1b71fdae 297 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 216 228 - T 11-10-2018 IPR033749 Polyprenyl synthetase, conserved site APJL_0813 98a0e1ee2c9fc5ed1f071e0c1b71fdae 297 Pfam PF00348 Polyprenyl synthetase 34 269 9.8E-54 T 11-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 APJL_0813 98a0e1ee2c9fc5ed1f071e0c1b71fdae 297 SUPERFAMILY SSF48576 13 278 7.91E-82 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APJL_0813 98a0e1ee2c9fc5ed1f071e0c1b71fdae 297 Gene3D G3DSA:1.10.600.10 2 297 4.3E-95 T 11-10-2018 IPR008949 Isoprenoid synthase domain superfamily APJL_0108 4b9bdda51b804651a6b950ec8af0026f 504 Gene3D G3DSA:1.20.1730.10 23 502 2.5E-102 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily APJL_0108 4b9bdda51b804651a6b950ec8af0026f 504 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site APJL_0108 4b9bdda51b804651a6b950ec8af0026f 504 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 7 498 1.2E-205 T 11-10-2018 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 APJL_0108 4b9bdda51b804651a6b950ec8af0026f 504 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 423 443 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site APJL_0108 4b9bdda51b804651a6b950ec8af0026f 504 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 441 5.0E-123 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 APJL_0108 4b9bdda51b804651a6b950ec8af0026f 504 Pfam PF00474 Sodium:solute symporter family 35 441 3.2E-136 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 APJL_1744 ea325e925afa1f23d85db3c1fe7c8b29 384 Gene3D G3DSA:3.40.50.450 1 286 2.3E-95 T 11-10-2018 APJL_1744 ea325e925afa1f23d85db3c1fe7c8b29 384 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 66 282 9.8E-82 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 APJL_1744 ea325e925afa1f23d85db3c1fe7c8b29 384 SUPERFAMILY SSF102405 78 284 1.97E-42 T 11-10-2018 APJL_1744 ea325e925afa1f23d85db3c1fe7c8b29 384 Gene3D G3DSA:1.10.10.10 313 383 7.8E-6 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1744 ea325e925afa1f23d85db3c1fe7c8b29 384 Pfam PF02481 DNA recombination-mediator protein A 69 273 2.9E-77 T 11-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 PIRSF PIRSF000161 1 268 3.2E-92 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 SUPERFAMILY SSF55347 127 236 1.35E-36 T 11-10-2018 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 3 265 34.942 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 128 264 2.3E-44 T 11-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 11-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 SUPERFAMILY SSF51735 3 268 2.31E-51 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 Gene3D G3DSA:3.30.360.10 127 234 1.2E-102 T 11-10-2018 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 4 125 6.8E-42 T 11-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 Gene3D G3DSA:3.40.50.720 4 264 1.2E-102 T 11-10-2018 APJL_0680 5cb68104bdfb489c7f82414560fd9605 269 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 2 265 1.2E-111 T 11-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 PIRSF PIRSF000148 1 370 7.4E-71 T 11-10-2018 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 Gene3D G3DSA:3.30.360.10 136 352 7.2E-153 T 11-10-2018 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 7.4E-24 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 SMART SM00859 3 123 3.0E-25 T 11-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 Gene3D G3DSA:3.40.50.720 4 359 7.2E-153 T 11-10-2018 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 SUPERFAMILY SSF51735 1 148 5.04E-55 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 3 368 2.7E-196 T 11-10-2018 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 146 355 1.2E-60 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 263 277 - T 11-10-2018 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 SUPERFAMILY SSF55347 135 356 9.4E-79 T 11-10-2018 APJL_0005 22866afb3eb1ec39c0b74612f8a30388 370 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 369 34.169 T 11-10-2018 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 APJL_1464 08cf8a38a2ea19c419658224315aa432 191 SUPERFAMILY SSF52218 1 189 4.53E-51 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1464 08cf8a38a2ea19c419658224315aa432 191 Gene3D G3DSA:3.40.50.360 1 191 6.5E-51 T 11-10-2018 IPR029039 Flavoprotein-like superfamily APJL_1464 08cf8a38a2ea19c419658224315aa432 191 Pfam PF02525 Flavodoxin-like fold 1 185 2.0E-46 T 11-10-2018 IPR003680 Flavodoxin-like fold APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SUPERFAMILY SSF50249 346 438 1.03E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Gene3D G3DSA:2.40.50.140 4 97 3.5E-11 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SUPERFAMILY SSF50249 428 537 1.42E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SMART SM00316 361 433 6.5E-21 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SMART SM00316 448 519 5.0E-17 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SMART SM00316 18 86 1.7 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SMART SM00316 274 346 2.9E-26 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SMART SM00316 189 259 3.9E-29 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SMART SM00316 102 170 2.9E-9 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SUPERFAMILY SSF50249 254 362 1.79E-27 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 519 1.4E-217 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SUPERFAMILY SSF50249 15 111 1.91E-12 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SUPERFAMILY SSF50249 190 275 6.58E-27 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Pfam PF00575 S1 RNA binding domain 190 259 2.9E-22 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Pfam PF00575 S1 RNA binding domain 105 170 4.8E-8 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Pfam PF00575 S1 RNA binding domain 448 519 5.7E-14 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Pfam PF00575 S1 RNA binding domain 273 346 1.3E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Pfam PF00575 S1 RNA binding domain 360 433 1.3E-20 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Gene3D G3DSA:2.40.50.140 357 443 1.6E-23 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Gene3D G3DSA:2.40.50.140 268 356 1.3E-29 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PIRSF PIRSF002111 1 533 1.6E-204 T 11-10-2018 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 211 232 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 329 347 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 20 38 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 107 123 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 289 308 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 83 102 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 38 52 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 125 142 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 PRINTS PR00681 Ribosomal protein S1 signature 154 174 3.8E-91 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Gene3D G3DSA:2.40.50.140 186 267 4.8E-29 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 SUPERFAMILY SSF50249 89 173 1.25E-13 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Gene3D G3DSA:2.40.50.140 98 177 1.5E-6 T 11-10-2018 APJL_0742 b2313ef2a5fad728bd5c12776e1a86df 554 Gene3D G3DSA:2.40.50.140 444 527 6.1E-17 T 11-10-2018 APJL_0170 7e6f60c7aceff48e9dfdbe5e194e6656 348 Pfam PF03116 NQR2, RnfD, RnfE family 5 345 2.4E-95 T 11-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 APJL_0170 7e6f60c7aceff48e9dfdbe5e194e6656 348 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 7 345 1.0E-126 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 APJL_0170 7e6f60c7aceff48e9dfdbe5e194e6656 348 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 2 347 26.314 T 11-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 APJL_0048 561ae265b73a62bdbb190600b7efd712 232 PIRSF PIRSF036446 1 229 2.8E-115 T 11-10-2018 IPR017056 Phosphoesterase, HI0762, predicted APJL_0048 561ae265b73a62bdbb190600b7efd712 232 Pfam PF00149 Calcineurin-like phosphoesterase 2 191 1.1E-7 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APJL_0048 561ae265b73a62bdbb190600b7efd712 232 SUPERFAMILY SSF56300 2 212 1.98E-17 T 11-10-2018 APJL_0214 0881f4d0101c065824d20d7462d5ea25 1115 SUPERFAMILY SSF52540 439 882 8.12E-15 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0214 0881f4d0101c065824d20d7462d5ea25 1115 TIGRFAM TIGR02562 cas3_yersinia: CRISPR-associated helicase Cas3, subtype I-F/YPEST 1 1113 0.0 T 11-10-2018 IPR013395 Helicase Cas3, CRISPR-associated, Yersinia-type APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 1.8E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 1.8E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 1.8E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 1.8E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 1.8E-25 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 1.3E-55 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 Gene3D G3DSA:1.10.520.20 2 106 2.8E-37 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 SUPERFAMILY SSF47928 3 104 1.26E-28 T 11-10-2018 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 175 4.3E-51 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1682 3bd2cc3bee35abcb8ce76f1ca14c84a4 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.345 T 11-10-2018 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_0628 7d55d4317aa9e8f8da10382da440072e 153 Gene3D G3DSA:3.30.300.70 1 80 2.3E-27 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily APJL_0628 7d55d4317aa9e8f8da10382da440072e 153 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 25.366 T 11-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 APJL_0628 7d55d4317aa9e8f8da10382da440072e 153 SUPERFAMILY SSF75420 3 83 3.4E-26 T 11-10-2018 IPR035956 RimP, N-terminal domain superfamily APJL_0628 7d55d4317aa9e8f8da10382da440072e 153 Pfam PF02576 RimP N-terminal domain 11 83 4.6E-31 T 11-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal APJL_0628 7d55d4317aa9e8f8da10382da440072e 153 SUPERFAMILY SSF74942 84 152 2.75E-18 T 11-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily APJL_0628 7d55d4317aa9e8f8da10382da440072e 153 Pfam PF17384 RimP C-terminal SH3 domain 86 151 1.7E-19 T 11-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal APJL_0006 7a3187870d0937a6559c87acce3cdc79 96 SUPERFAMILY SSF56935 5 96 2.09E-6 T 11-10-2018 APJL_1237 175d2debda19b2bd906192132788f909 116 Gene3D G3DSA:3.40.1260.10 1 116 2.6E-31 T 11-10-2018 IPR027396 DsrEFH-like APJL_1237 175d2debda19b2bd906192132788f909 116 SUPERFAMILY SSF75169 1 116 1.7E-32 T 11-10-2018 IPR027396 DsrEFH-like APJL_1237 175d2debda19b2bd906192132788f909 116 Pfam PF02635 DsrE/DsrF-like family 2 116 1.8E-22 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein APJL_1724 7b626314a4be0ab56761f941458140a5 222 Gene3D G3DSA:1.10.3720.10 3 221 1.4E-47 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1724 7b626314a4be0ab56761f941458140a5 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 213 5.0E-17 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1724 7b626314a4be0ab56761f941458140a5 222 SUPERFAMILY SSF161098 14 209 2.75E-39 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1724 7b626314a4be0ab56761f941458140a5 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 4.8E-17 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APJL_1113 3bf099285ee35ec31b9de9c25bb04a9e 210 Pfam PF13394 4Fe-4S single cluster domain 32 106 4.3E-11 T 11-10-2018 APJL_1113 3bf099285ee35ec31b9de9c25bb04a9e 210 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 11 210 34.669 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 APJL_1113 3bf099285ee35ec31b9de9c25bb04a9e 210 PIRSF PIRSF000370 9 210 4.2E-43 T 11-10-2018 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 APJL_1113 3bf099285ee35ec31b9de9c25bb04a9e 210 SUPERFAMILY SSF102114 34 117 4.19E-15 T 11-10-2018 APJL_1113 3bf099285ee35ec31b9de9c25bb04a9e 210 Gene3D G3DSA:3.20.20.70 10 210 3.4E-53 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1113 3bf099285ee35ec31b9de9c25bb04a9e 210 Pfam PF04055 Radical SAM superfamily 36 118 1.6E-13 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 2.4E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 2.4E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 2.4E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 306 332 2.4E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 2.4E-60 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 341 1.8E-163 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 Gene3D G3DSA:3.30.420.40 158 323 3.3E-125 T 11-10-2018 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 SUPERFAMILY SSF53067 9 152 4.91E-36 T 11-10-2018 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 Gene3D G3DSA:3.30.420.40 14 333 3.3E-125 T 11-10-2018 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 Pfam PF06723 MreB/Mbl protein 11 340 1.8E-143 T 11-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 SUPERFAMILY SSF53067 154 342 3.18E-48 T 11-10-2018 APJL_0461 6865f52ab86bb0f501fbdf7db47e019e 350 Gene3D G3DSA:3.90.640.10 190 265 3.3E-125 T 11-10-2018 APJL_1149 d8809530dea3b834c930d9eeba0f3cb9 465 Pfam PF16325 Peptidase family U32 C-terminal domain 370 452 9.0E-18 T 11-10-2018 IPR032525 Peptidase family U32, C-terminal APJL_1149 d8809530dea3b834c930d9eeba0f3cb9 465 ProSitePatterns PS01276 Peptidase family U32 signature. 167 185 - T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 APJL_1149 d8809530dea3b834c930d9eeba0f3cb9 465 Pfam PF01136 Peptidase family U32 80 354 4.6E-96 T 11-10-2018 IPR001539 Peptidase U32 GO:0006508|GO:0008233 APJL_1149 d8809530dea3b834c930d9eeba0f3cb9 465 Gene3D G3DSA:2.40.30.10 366 452 3.9E-9 T 11-10-2018 APJL_0114 3b9415eced3f8ced0d97d5ede4b45590 196 Gene3D G3DSA:1.20.1590.10 1 195 8.7E-59 T 11-10-2018 IPR023381 YP001051499.1-like domain superfamily APJL_0114 3b9415eced3f8ced0d97d5ede4b45590 196 Pfam PF04222 Protein of unknown function (DUF416) 4 193 2.3E-74 T 11-10-2018 IPR007338 Protein of unknown function DUF416 APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 SUPERFAMILY SSF49493 261 346 7.85E-24 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 Gene3D G3DSA:1.10.287.110 1 115 2.8E-39 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 Pfam PF01556 DnaJ C terminal domain 123 335 1.5E-44 T 11-10-2018 IPR002939 Chaperone DnaJ, C-terminal APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-10-2018 IPR018253 DnaJ domain, conserved site APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 SUPERFAMILY SSF49493 116 269 3.53E-21 T 11-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 373 42.014 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 Gene3D G3DSA:2.60.260.20 258 366 2.3E-30 T 11-10-2018 APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 351 2.2E-140 T 11-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 PRINTS PR00625 DnaJ domain signature 62 81 2.3E-32 T 11-10-2018 IPR001623 DnaJ domain APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 PRINTS PR00625 DnaJ domain signature 42 62 2.3E-32 T 11-10-2018 IPR001623 DnaJ domain APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 PRINTS PR00625 DnaJ domain signature 7 25 2.3E-32 T 11-10-2018 IPR001623 DnaJ domain APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 PRINTS PR00625 DnaJ domain signature 25 40 2.3E-32 T 11-10-2018 IPR001623 DnaJ domain APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 Pfam PF00226 DnaJ domain 5 67 1.3E-27 T 11-10-2018 IPR001623 DnaJ domain APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 Gene3D G3DSA:2.10.230.10 147 213 1.6E-21 T 11-10-2018 APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 Pfam PF00684 DnaJ central domain 149 209 9.4E-14 T 11-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 SUPERFAMILY SSF57938 136 213 1.83E-21 T 11-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 SUPERFAMILY SSF46565 1 109 2.75E-36 T 11-10-2018 IPR036869 Chaperone J-domain superfamily APJL_1952 72fb6eb8b4f18725212ee7741fc690c7 380 SMART SM00271 4 62 3.7E-31 T 11-10-2018 IPR001623 DnaJ domain APJL_0055 fa0508d4ed7c92616405b018da525f7e 238 Pfam PF03725 3' exoribonuclease family, domain 2 158 224 2.3E-11 T 11-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0055 fa0508d4ed7c92616405b018da525f7e 238 Gene3D G3DSA:3.30.230.70 10 237 3.3E-64 T 11-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0055 fa0508d4ed7c92616405b018da525f7e 238 SUPERFAMILY SSF54211 1 181 5.57E-46 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0055 fa0508d4ed7c92616405b018da525f7e 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 129 - T 11-10-2018 IPR018336 Ribonuclease PH, conserved site APJL_0055 fa0508d4ed7c92616405b018da525f7e 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 5.2E-115 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 APJL_0055 fa0508d4ed7c92616405b018da525f7e 238 Hamap MF_00564 Ribonuclease PH [rph]. 11 237 45.508 T 11-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 APJL_0055 fa0508d4ed7c92616405b018da525f7e 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 1.7E-23 T 11-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0055 fa0508d4ed7c92616405b018da525f7e 238 SUPERFAMILY SSF55666 153 236 3.93E-26 T 11-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 APJL_0505 5709e32476980a951c4720b15917829a 253 Hamap MF_00766 Biosynthetic peptidoglycan transglycosylase [mtgA]. 27 247 37.762 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0505 5709e32476980a951c4720b15917829a 253 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 43 244 1.1E-80 T 11-10-2018 IPR011812 Biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0505 5709e32476980a951c4720b15917829a 253 SUPERFAMILY SSF53955 64 245 2.45E-56 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APJL_0505 5709e32476980a951c4720b15917829a 253 Pfam PF00912 Transglycosylase 76 241 1.1E-48 T 11-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0505 5709e32476980a951c4720b15917829a 253 Gene3D G3DSA:1.10.3810.10 60 248 1.0E-50 T 11-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 6 216 1.8E-85 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 132 155 2.1E-64 T 11-10-2018 APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 101 119 2.1E-64 T 11-10-2018 APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 27 48 2.1E-64 T 11-10-2018 APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 193 216 2.1E-64 T 11-10-2018 APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 76 99 2.1E-64 T 11-10-2018 APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 53 70 2.1E-64 T 11-10-2018 APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 PIRSF PIRSF002764 1 220 6.1E-75 T 11-10-2018 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria APJL_1389 43c669168eebb22dedd354d2fc64c27a 220 Pfam PF03379 CcmB protein 4 217 6.9E-82 T 11-10-2018 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_0143 5c7ca96733f5647b0dbd7422ad713494 377 Gene3D G3DSA:3.90.1510.10 42 276 4.6E-141 T 11-10-2018 IPR018193 Glycerate kinase, flavodoxin-like fold GO:0008887|GO:0031388 APJL_0143 5c7ca96733f5647b0dbd7422ad713494 377 PIRSF PIRSF006078 1 376 2.3E-137 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 APJL_0143 5c7ca96733f5647b0dbd7422ad713494 377 Pfam PF02595 Glycerate kinase family 3 374 2.1E-148 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 APJL_0143 5c7ca96733f5647b0dbd7422ad713494 377 SUPERFAMILY SSF110738 1 376 3.79E-142 T 11-10-2018 IPR036129 Glycerate kinase superfamily GO:0008887|GO:0031388 APJL_0143 5c7ca96733f5647b0dbd7422ad713494 377 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 375 1.6E-159 T 11-10-2018 IPR004381 Glycerate kinase GO:0008887|GO:0031388 APJL_0143 5c7ca96733f5647b0dbd7422ad713494 377 Gene3D G3DSA:3.40.50.10350 1 362 4.6E-141 T 11-10-2018 IPR018197 Glycerate kinase, restriction-enzyme-like fold APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 1 733 32.951 T 11-10-2018 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 Gene3D G3DSA:2.120.10.90 490 735 1.5E-17 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 SUPERFAMILY SSF56719 21 473 6.67E-151 T 11-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 1 731 0.0 T 11-10-2018 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 586 623 0.0023 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 637 676 3.0E-4 T 11-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 Gene3D G3DSA:3.90.199.10 20 151 2.3E-57 T 11-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 Gene3D G3DSA:1.10.268.10 334 472 5.4E-45 T 11-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 22 458 2.4E-134 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 SMART SM00434 1 451 3.1E-229 T 11-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 SUPERFAMILY SSF101904 487 731 1.44E-50 T 11-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal APJL_0571 b4ad730e9f158dc8b633cac5365c1cfe 736 Gene3D G3DSA:3.30.1360.40 152 333 1.5E-68 T 11-10-2018 APJL_1154 e2fc8b1ca719c32ecc499386768244a0 163 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 9 148 3.8E-46 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 APJL_1154 e2fc8b1ca719c32ecc499386768244a0 163 Gene3D G3DSA:3.40.50.300 3 162 6.9E-47 T 11-10-2018 APJL_1154 e2fc8b1ca719c32ecc499386768244a0 163 SUPERFAMILY SSF52540 38 147 1.27E-21 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1154 e2fc8b1ca719c32ecc499386768244a0 163 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 11 138 6.1E-38 T 11-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 APJL_0647 5d6b449c894d0fa252312494da136644 138 Gene3D G3DSA:2.30.30.220 1 126 3.0E-44 T 11-10-2018 IPR036760 SspB-like superfamily APJL_0647 5d6b449c894d0fa252312494da136644 138 PIRSF PIRSF005276 1 138 7.8E-54 T 11-10-2018 IPR007481 Stringent starvation protein B APJL_0647 5d6b449c894d0fa252312494da136644 138 SUPERFAMILY SSF101738 1 109 1.44E-42 T 11-10-2018 IPR036760 SspB-like superfamily APJL_0647 5d6b449c894d0fa252312494da136644 138 Pfam PF04386 Stringent starvation protein B 4 133 9.0E-30 T 11-10-2018 IPR007481 Stringent starvation protein B APJL_0851 fb3ca520ac4149b611e3778dd90ed613 242 SUPERFAMILY SSF75217 6 166 5.56E-35 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APJL_0851 fb3ca520ac4149b611e3778dd90ed613 242 PIRSF PIRSF004808 2 242 9.5E-75 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 APJL_0851 fb3ca520ac4149b611e3778dd90ed613 242 Gene3D G3DSA:3.40.1280.10 2 168 1.7E-62 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APJL_0851 fb3ca520ac4149b611e3778dd90ed613 242 Pfam PF00588 SpoU rRNA Methylase family 7 156 1.9E-33 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APJL_0851 fb3ca520ac4149b611e3778dd90ed613 242 Gene3D G3DSA:1.10.8.590 177 242 8.5E-30 T 11-10-2018 APJL_0851 fb3ca520ac4149b611e3778dd90ed613 242 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 4 240 2.3E-85 T 11-10-2018 IPR004384 RNA methyltransferase TrmJ/LasT GO:0006396|GO:0008173 APJL_0952 c1fc79d5eded340f7f75391a6d27e736 432 PIRSF PIRSF000521 27 428 4.1E-30 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_0952 c1fc79d5eded340f7f75391a6d27e736 432 SUPERFAMILY SSF53383 4 427 2.6E-128 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0952 c1fc79d5eded340f7f75391a6d27e736 432 Pfam PF00202 Aminotransferase class-III 26 425 7.1E-131 T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_0952 c1fc79d5eded340f7f75391a6d27e736 432 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 2 429 49.342 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 APJL_0952 c1fc79d5eded340f7f75391a6d27e736 432 Gene3D G3DSA:3.40.640.10 62 335 5.2E-164 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0952 c1fc79d5eded340f7f75391a6d27e736 432 Gene3D G3DSA:3.90.1150.10 11 420 5.2E-164 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0952 c1fc79d5eded340f7f75391a6d27e736 432 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 247 284 - T 11-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 APJL_0952 c1fc79d5eded340f7f75391a6d27e736 432 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 14 426 1.3E-176 T 11-10-2018 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 APJL_1489 37a1b411d63d562ddad8adb6a20020f0 349 SUPERFAMILY SSF53756 52 204 9.42E-6 T 11-10-2018 APJL_1489 37a1b411d63d562ddad8adb6a20020f0 349 Gene3D G3DSA:3.40.50.2000 164 334 2.6E-73 T 11-10-2018 APJL_1489 37a1b411d63d562ddad8adb6a20020f0 349 PIRSF PIRSF007023 1 349 3.6E-79 T 11-10-2018 IPR016503 UDP-galactofuranosyltransferase GO:0016757 APJL_1489 37a1b411d63d562ddad8adb6a20020f0 349 Gene3D G3DSA:3.40.50.2000 18 342 2.6E-73 T 11-10-2018 APJL_0152 07c06f129a321e38cc89a89be7ff2433 410 Pfam PF03116 NQR2, RnfD, RnfE family 41 402 1.2E-107 T 11-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 APJL_0152 07c06f129a321e38cc89a89be7ff2433 410 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 409 36.116 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 APJL_0152 07c06f129a321e38cc89a89be7ff2433 410 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 405 5.3E-196 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 APJL_0152 07c06f129a321e38cc89a89be7ff2433 410 PIRSF PIRSF016055 1 410 1.5E-195 T 11-10-2018 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0010181|GO:0016021|GO:0016655|GO:0022904 APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 189 203 3.5E-20 T 11-10-2018 APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 165 181 3.5E-20 T 11-10-2018 APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 270 282 3.5E-20 T 11-10-2018 APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 299 323 3.5E-20 T 11-10-2018 APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 Pfam PF12161 HsdM N-terminal domain 3 133 6.0E-15 T 11-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 273 279 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 Gene3D G3DSA:3.40.50.150 141 444 3.6E-83 T 11-10-2018 APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 Gene3D G3DSA:1.20.1260.30 1 139 1.4E-45 T 11-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 SUPERFAMILY SSF53335 3 486 3.38E-115 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1434 4aff2215d9bc966de4d0bf934d358954 489 Pfam PF02384 N-6 DNA Methylase 143 443 1.2E-67 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 APJL_0615 3d995a1fe77b288dd89358ff8f3ee267 357 SUPERFAMILY SSF51569 7 353 8.58E-130 T 11-10-2018 APJL_0615 3d995a1fe77b288dd89358ff8f3ee267 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 354 4.6E-168 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APJL_0615 3d995a1fe77b288dd89358ff8f3ee267 357 Pfam PF00793 DAHP synthetase I family 41 341 1.2E-101 T 11-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APJL_0615 3d995a1fe77b288dd89358ff8f3ee267 357 PIRSF PIRSF001361 1 357 4.3E-155 T 11-10-2018 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 APJL_0615 3d995a1fe77b288dd89358ff8f3ee267 357 Gene3D G3DSA:3.20.20.70 1 355 4.9E-158 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1522 a91bc6a95f27d52d34bc80bbdaacacb5 724 Pfam PF13515 Fusaric acid resistance protein-like 405 528 2.2E-24 T 11-10-2018 APJL_1522 a91bc6a95f27d52d34bc80bbdaacacb5 724 Pfam PF12805 FUSC-like inner membrane protein yccS 68 344 1.6E-100 T 11-10-2018 IPR032692 Integral membrane protein YccS, N-terminal APJL_1522 a91bc6a95f27d52d34bc80bbdaacacb5 724 SUPERFAMILY SSF103473 36 531 3.66E-9 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_1522 a91bc6a95f27d52d34bc80bbdaacacb5 724 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 718 2.4E-213 T 11-10-2018 IPR010020 Integral membrane protein, YccS/YhfK APJL_1522 a91bc6a95f27d52d34bc80bbdaacacb5 724 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 12 718 4.5E-232 T 11-10-2018 IPR010019 Integral membrane protein, YccS APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 SUPERFAMILY SSF50615 10 94 3.73E-26 T 11-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 SUPERFAMILY SSF52540 96 381 7.44E-94 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 1.9E-72 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 26 92 2.7E-14 T 11-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 SUPERFAMILY SSF47917 383 510 1.73E-46 T 11-10-2018 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 4.2E-46 T 11-10-2018 IPR000793 ATP synthase, alpha subunit, C-terminal GO:0015986 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 Gene3D G3DSA:2.40.30.20 1 93 1.4E-30 T 11-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 PIRSF PIRSF039088 1 513 1.1E-232 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 Gene3D G3DSA:1.20.150.20 383 513 4.0E-49 T 11-10-2018 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 11-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 511 2.3E-259 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 Gene3D G3DSA:3.40.50.300 94 382 5.0E-131 T 11-10-2018 APJL_1681 6e608dc7b25479157a77c3f99a808cbd 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 50.624 T 11-10-2018 IPR005294 ATP synthase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_0386 adbaa58343587b234705e6891f16f283 360 SUPERFAMILY SSF53850 37 357 3.3E-87 T 11-10-2018 APJL_0386 adbaa58343587b234705e6891f16f283 360 Pfam PF13416 Bacterial extracellular solute-binding protein 53 326 1.8E-40 T 11-10-2018 IPR006059 Bacterial extracellular solute-binding protein APJL_0386 adbaa58343587b234705e6891f16f283 360 Gene3D G3DSA:3.40.190.10 144 334 2.8E-110 T 11-10-2018 APJL_0386 adbaa58343587b234705e6891f16f283 360 PIRSF PIRSF019574 1 360 4.5E-114 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 161 175 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 104 117 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 59 80 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 88 102 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 260 279 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 305 331 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 135 151 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 43 59 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 5.5E-104 T 11-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 APJL_0386 adbaa58343587b234705e6891f16f283 360 Gene3D G3DSA:3.40.190.10 42 327 2.8E-110 T 11-10-2018 APJL_1297 6b60d15910dd511de1db30e52893d09d 122 SUPERFAMILY SSF52821 11 121 6.94E-26 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_1297 6b60d15910dd511de1db30e52893d09d 122 SMART SM00450 25 122 7.5E-22 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_1297 6b60d15910dd511de1db30e52893d09d 122 Gene3D G3DSA:3.40.250.10 41 120 1.4E-26 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_1297 6b60d15910dd511de1db30e52893d09d 122 Pfam PF00581 Rhodanese-like domain 27 115 5.2E-14 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_0192 11526aefd7b6af2a83ed29a960d346d3 452 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 32 46 - T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_0192 11526aefd7b6af2a83ed29a960d346d3 452 Pfam PF00209 Sodium:neurotransmitter symporter family 8 132 3.7E-23 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_0192 11526aefd7b6af2a83ed29a960d346d3 452 Pfam PF00209 Sodium:neurotransmitter symporter family 161 451 3.0E-33 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_0192 11526aefd7b6af2a83ed29a960d346d3 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 16 37 3.6E-12 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_0192 11526aefd7b6af2a83ed29a960d346d3 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 45 64 3.6E-12 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_0192 11526aefd7b6af2a83ed29a960d346d3 452 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 263 283 3.6E-12 T 11-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 APJL_0192 11526aefd7b6af2a83ed29a960d346d3 452 SUPERFAMILY SSF161070 8 452 3.01E-123 T 11-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 APJL_1427 d76a0b1254e7fb4b4f914a6448cd9b26 319 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 79 297 3.2E-67 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APJL_1427 d76a0b1254e7fb4b4f914a6448cd9b26 319 Gene3D G3DSA:3.40.50.2000 165 318 7.3E-45 T 11-10-2018 APJL_1427 d76a0b1254e7fb4b4f914a6448cd9b26 319 Gene3D G3DSA:3.40.50.2000 1 163 1.3E-62 T 11-10-2018 APJL_1427 d76a0b1254e7fb4b4f914a6448cd9b26 319 SUPERFAMILY SSF53756 1 317 5.34E-72 T 11-10-2018 APJL_1427 d76a0b1254e7fb4b4f914a6448cd9b26 319 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 316 1.9E-124 T 11-10-2018 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 APJL_0374 cebc45bbbe9858eb2acca95f89360710 189 SUPERFAMILY SSF89155 4 182 1.29E-37 T 11-10-2018 IPR036411 TorD-like superfamily APJL_0374 cebc45bbbe9858eb2acca95f89360710 189 Gene3D G3DSA:1.10.3480.10 103 186 5.6E-9 T 11-10-2018 APJL_0374 cebc45bbbe9858eb2acca95f89360710 189 Gene3D G3DSA:1.10.3480.10 2 102 1.4E-7 T 11-10-2018 APJL_0374 cebc45bbbe9858eb2acca95f89360710 189 PIRSF PIRSF004690 1 188 2.4E-50 T 11-10-2018 IPR026269 Tat proofreading chaperone DmsD-type APJL_1788 fde1b0fbb4f6cfea30ff692127d436d8 290 Pfam PF00480 ROK family 3 288 4.4E-84 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 APJL_1788 fde1b0fbb4f6cfea30ff692127d436d8 290 Gene3D G3DSA:3.30.420.40 5 283 2.0E-83 T 11-10-2018 APJL_1788 fde1b0fbb4f6cfea30ff692127d436d8 290 SUPERFAMILY SSF53067 1 289 9.86E-57 T 11-10-2018 APJL_1788 fde1b0fbb4f6cfea30ff692127d436d8 290 Gene3D G3DSA:3.30.420.40 118 270 2.0E-83 T 11-10-2018 APJL_1344 ff2a01089e58433409e231f442ce1083 477 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 107 127 2.1E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_1344 ff2a01089e58433409e231f442ce1083 477 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 374 398 2.1E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_1344 ff2a01089e58433409e231f442ce1083 477 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 65 88 2.1E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_1344 ff2a01089e58433409e231f442ce1083 477 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 341 362 2.1E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_1344 ff2a01089e58433409e231f442ce1083 477 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 441 456 2.1E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_1344 ff2a01089e58433409e231f442ce1083 477 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 456 476 2.1E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_1344 ff2a01089e58433409e231f442ce1083 477 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 398 421 2.1E-61 T 11-10-2018 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 APJL_1344 ff2a01089e58433409e231f442ce1083 477 Gene3D G3DSA:2.40.50.100 329 365 7.4E-12 T 11-10-2018 APJL_1344 ff2a01089e58433409e231f442ce1083 477 Gene3D G3DSA:1.10.287.470 268 328 7.4E-12 T 11-10-2018 APJL_1344 ff2a01089e58433409e231f442ce1083 477 Pfam PF13437 HlyD family secretion protein 329 441 3.0E-13 T 11-10-2018 APJL_1344 ff2a01089e58433409e231f442ce1083 477 Gene3D G3DSA:2.40.30.170 366 411 7.4E-12 T 11-10-2018 APJL_1344 ff2a01089e58433409e231f442ce1083 477 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 56 477 1.6E-113 T 11-10-2018 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 APJL_1344 ff2a01089e58433409e231f442ce1083 477 ProSitePatterns PS00543 HlyD family secretion proteins signature. 441 463 - T 11-10-2018 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 APJL_1344 ff2a01089e58433409e231f442ce1083 477 Pfam PF13533 Biotin-lipoyl like 101 128 3.0E-5 T 11-10-2018 IPR039562 Membrane fusion protein, biotin-lipoyl like domain APJL_1206 d700dbb120d36af11b1a2ec97c5b3299 297 Pfam PF03466 LysR substrate binding domain 88 291 1.1E-48 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_1206 d700dbb120d36af11b1a2ec97c5b3299 297 SUPERFAMILY SSF46785 4 111 5.22E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1206 d700dbb120d36af11b1a2ec97c5b3299 297 Gene3D G3DSA:1.10.10.10 3 88 3.7E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1206 d700dbb120d36af11b1a2ec97c5b3299 297 Gene3D G3DSA:3.40.190.290 92 291 2.9E-64 T 11-10-2018 APJL_1206 d700dbb120d36af11b1a2ec97c5b3299 297 SUPERFAMILY SSF53850 88 293 8.84E-49 T 11-10-2018 APJL_1206 d700dbb120d36af11b1a2ec97c5b3299 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 3.0E-19 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0705 b25359c43833e0c7d39a5023990cf42d 290 SUPERFAMILY SSF46689 6 80 3.7E-19 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0705 b25359c43833e0c7d39a5023990cf42d 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 80 4.1E-23 T 11-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 APJL_0705 b25359c43833e0c7d39a5023990cf42d 290 Gene3D G3DSA:1.10.10.10 2 84 4.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0705 b25359c43833e0c7d39a5023990cf42d 290 Gene3D G3DSA:3.40.50.10490 101 284 1.2E-47 T 11-10-2018 APJL_0705 b25359c43833e0c7d39a5023990cf42d 290 SUPERFAMILY SSF53697 99 270 4.06E-42 T 11-10-2018 APJL_0705 b25359c43833e0c7d39a5023990cf42d 290 Pfam PF01380 SIS domain 132 259 9.8E-23 T 11-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 APJL_0043 920c84f98fce5df17ece7222927a3026 247 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 77 9.5E-20 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 APJL_0043 920c84f98fce5df17ece7222927a3026 247 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 1 243 6.1E-91 T 11-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 APJL_0043 920c84f98fce5df17ece7222927a3026 247 Pfam PF00588 SpoU rRNA Methylase family 96 237 1.5E-39 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APJL_0043 920c84f98fce5df17ece7222927a3026 247 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 2 244 43.625 T 11-10-2018 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB APJL_0043 920c84f98fce5df17ece7222927a3026 247 SUPERFAMILY SSF55315 2 75 2.12E-19 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like APJL_0043 920c84f98fce5df17ece7222927a3026 247 Gene3D G3DSA:3.40.1280.10 77 243 4.1E-63 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APJL_0043 920c84f98fce5df17ece7222927a3026 247 SUPERFAMILY SSF75217 70 244 1.05E-46 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APJL_0043 920c84f98fce5df17ece7222927a3026 247 SMART SM00967 4 80 5.5E-19 T 11-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 APJL_0043 920c84f98fce5df17ece7222927a3026 247 Gene3D G3DSA:3.30.1330.30 1 76 7.1E-28 T 11-10-2018 IPR029064 50S ribosomal protein L30e-like APJL_0182 f35bed09e12df6d785223bbce671292f 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 2 123 8.5E-25 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APJL_0182 f35bed09e12df6d785223bbce671292f 135 ProSitePatterns PS00935 Glyoxalase I signature 2. 69 81 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APJL_0182 f35bed09e12df6d785223bbce671292f 135 Gene3D G3DSA:3.10.180.10 1 133 9.3E-49 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APJL_0182 f35bed09e12df6d785223bbce671292f 135 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 2 134 4.1E-65 T 11-10-2018 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APJL_0182 f35bed09e12df6d785223bbce671292f 135 ProSitePatterns PS00934 Glyoxalase I signature 1. 5 26 - T 11-10-2018 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 APJL_0182 f35bed09e12df6d785223bbce671292f 135 SUPERFAMILY SSF54593 1 128 6.18E-36 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 367 4.5E-118 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 SUPERFAMILY SSF55979 1 119 2.3E-27 T 11-10-2018 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 Gene3D G3DSA:3.10.150.10 249 367 4.9E-39 T 11-10-2018 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 SUPERFAMILY SSF55979 127 245 6.96E-29 T 11-10-2018 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 SMART SM00480 17 363 1.1E-149 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 131 244 1.3E-38 T 11-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 SUPERFAMILY SSF55979 246 367 3.24E-37 T 11-10-2018 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 Gene3D G3DSA:3.10.150.10 1 123 3.7E-40 T 11-10-2018 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 246 366 2.4E-41 T 11-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 120 1.9E-38 T 11-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 PIRSF PIRSF000804 1 367 8.3E-118 T 11-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 APJL_0002 47364a82bd94d5d5a737d4ada667e7ef 367 Gene3D G3DSA:3.10.150.10 126 248 2.4E-36 T 11-10-2018 APJL_0443 10dfdcae608f8743cf140a403e1fbfa2 252 SUPERFAMILY SSF53448 1 140 1.37E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0443 10dfdcae608f8743cf140a403e1fbfa2 252 Pfam PF00535 Glycosyl transferase family 2 5 125 2.9E-20 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APJL_0443 10dfdcae608f8743cf140a403e1fbfa2 252 Gene3D G3DSA:3.90.550.10 1 160 1.2E-24 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0467 25e7236936257499a5abfa4eda2ea492 358 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 10 354 8.6E-136 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 APJL_0467 25e7236936257499a5abfa4eda2ea492 358 Gene3D G3DSA:3.40.50.1820 18 344 5.2E-136 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0467 25e7236936257499a5abfa4eda2ea492 358 Gene3D G3DSA:1.10.1740.110 172 275 5.2E-136 T 11-10-2018 APJL_0467 25e7236936257499a5abfa4eda2ea492 358 Pfam PF00561 alpha/beta hydrolase fold 40 338 2.8E-45 T 11-10-2018 IPR000073 Alpha/beta hydrolase fold-1 APJL_0467 25e7236936257499a5abfa4eda2ea492 358 Hamap MF_00296 Homoserine O-acetyltransferase [metXA]. 2 355 29.762 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 APJL_0467 25e7236936257499a5abfa4eda2ea492 358 SUPERFAMILY SSF53474 5 354 3.02E-103 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0467 25e7236936257499a5abfa4eda2ea492 358 PIRSF PIRSF000443 1 358 6.5E-125 T 11-10-2018 IPR008220 Homoserine/serine acetyltransferase MetX-like GO:0005737|GO:0009058|GO:0016747 APJL_0985 292974c1485457097264141202e26dd8 552 Gene3D G3DSA:3.30.70.1450 195 273 4.2E-10 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_0985 292974c1485457097264141202e26dd8 552 Gene3D G3DSA:3.30.70.1450 284 358 5.8E-11 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_0985 292974c1485457097264141202e26dd8 552 SUPERFAMILY SSF116726 292 359 1.96E-11 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_0985 292974c1485457097264141202e26dd8 552 Pfam PF02080 TrkA-C domain 212 273 1.3E-7 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APJL_0985 292974c1485457097264141202e26dd8 552 Pfam PF02080 TrkA-C domain 291 359 1.4E-9 T 11-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 APJL_0985 292974c1485457097264141202e26dd8 552 Hamap MF_01016 Putative transport protein YidE [yidE]. 1 552 59.856 T 11-10-2018 IPR023018 Transport protein YidE, putative APJL_0985 292974c1485457097264141202e26dd8 552 Pfam PF06826 Predicted Permease Membrane Region 373 545 5.3E-45 T 11-10-2018 IPR006512 YidE/YbjL duplication APJL_0985 292974c1485457097264141202e26dd8 552 Pfam PF06826 Predicted Permease Membrane Region 11 178 3.0E-41 T 11-10-2018 IPR006512 YidE/YbjL duplication APJL_0985 292974c1485457097264141202e26dd8 552 SUPERFAMILY SSF116726 201 272 3.4E-8 T 11-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 APJL_0985 292974c1485457097264141202e26dd8 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 165 6.3E-36 T 11-10-2018 IPR006512 YidE/YbjL duplication APJL_0985 292974c1485457097264141202e26dd8 552 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 378 532 4.1E-45 T 11-10-2018 IPR006512 YidE/YbjL duplication APJL_0082 2d806aa3726150bb605e0d9e769fd595 208 Pfam PF02734 DAK2 domain 32 204 6.4E-57 T 11-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 APJL_0082 2d806aa3726150bb605e0d9e769fd595 208 TIGRFAM TIGR02365 dha_L_ycgS: dihydroxyacetone kinase, L subunit 9 204 2.9E-77 T 11-10-2018 IPR012737 Dihydroxyacetone kinase, subunit L GO:0016772 KEGG: 00561+2.7.1.121 APJL_0082 2d806aa3726150bb605e0d9e769fd595 208 SUPERFAMILY SSF101473 2 206 1.83E-59 T 11-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 APJL_0082 2d806aa3726150bb605e0d9e769fd595 208 Gene3D G3DSA:1.25.40.340 1 208 1.7E-70 T 11-10-2018 IPR036117 DhaL domain superfamily GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 APJL_0082 2d806aa3726150bb605e0d9e769fd595 208 SMART SM01120 32 205 1.2E-80 T 11-10-2018 IPR004007 DhaL domain GO:0004371|GO:0006071 Reactome: R-HSA-168928|Reactome: R-HSA-70350 APJL_1160 84e853869cc663bf25e61db09b33da74 177 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 100 137 1.7E-13 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 APJL_1160 84e853869cc663bf25e61db09b33da74 177 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 10 47 3.2E-16 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 APJL_1160 84e853869cc663bf25e61db09b33da74 177 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 57 92 5.6E-15 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 APJL_1160 84e853869cc663bf25e61db09b33da74 177 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 140 171 2.0 T 11-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 APJL_1160 84e853869cc663bf25e61db09b33da74 177 Gene3D G3DSA:3.30.65.10 53 100 3.9E-6 T 11-10-2018 APJL_1160 84e853869cc663bf25e61db09b33da74 177 Gene3D G3DSA:3.30.65.10 6 52 1.4E-7 T 11-10-2018 APJL_1160 84e853869cc663bf25e61db09b33da74 177 SUPERFAMILY SSF57783 12 49 6.63E-12 T 11-10-2018 APJL_1160 84e853869cc663bf25e61db09b33da74 177 SUPERFAMILY SSF57783 95 134 1.07E-6 T 11-10-2018 APJL_1160 84e853869cc663bf25e61db09b33da74 177 SUPERFAMILY SSF57783 57 94 3.74E-11 T 11-10-2018 APJL_0079 e29338cf799835ace504dc8b1961013c 108 SUPERFAMILY SSF52821 4 106 4.58E-27 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_0079 e29338cf799835ace504dc8b1961013c 108 Gene3D G3DSA:3.40.250.10 2 101 1.3E-22 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_0079 e29338cf799835ace504dc8b1961013c 108 SMART SM00450 8 103 9.3E-16 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_0079 e29338cf799835ace504dc8b1961013c 108 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 3 106 32.116 T 11-10-2018 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350|MetaCyc: PWY-7927 APJL_0079 e29338cf799835ace504dc8b1961013c 108 Pfam PF00581 Rhodanese-like domain 9 99 4.8E-13 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_0025 7f2665db884245d91e67496dc1478dea 306 SUPERFAMILY SSF54211 134 279 8.34E-50 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0025 7f2665db884245d91e67496dc1478dea 306 Gene3D G3DSA:3.30.1700.10 129 306 1.0E-65 T 11-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APJL_0025 7f2665db884245d91e67496dc1478dea 306 Gene3D G3DSA:3.30.230.20 1 128 3.7E-50 T 11-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APJL_0025 7f2665db884245d91e67496dc1478dea 306 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 277 1.4E-105 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APJL_0025 7f2665db884245d91e67496dc1478dea 306 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 299 3.0E-144 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APJL_0025 7f2665db884245d91e67496dc1478dea 306 SUPERFAMILY SSF54211 3 126 1.44E-40 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0025 7f2665db884245d91e67496dc1478dea 306 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 281 45.669 T 11-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF05594 Haemagluttinin repeat 750 779 1.8 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF05594 Haemagluttinin repeat 694 728 1.8 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF05594 Haemagluttinin repeat 259 350 1.8E-4 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF05594 Haemagluttinin repeat 592 639 0.1 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF05594 Haemagluttinin repeat 1413 1477 28.0 T 11-10-2018 IPR008619 Filamentous haemagglutinin repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 SMART SM00912 91 211 9.5E-51 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF05860 haemagglutination activity domain 77 210 9.8E-32 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Gene3D G3DSA:2.160.20.10 78 387 3.5E-107 T 11-10-2018 IPR012334 Pectin lyase fold APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 754 782 0.78 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 561 595 0.001 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 605 636 8.9E-4 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 1444 1480 0.35 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 619 653 0.0023 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 TIGRFAM TIGR01731 fil_hemag_20aa: adhesin HecA family 20-residue repeat (two copies) 696 729 1.1 T 11-10-2018 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF13018 Extended Signal Peptide of Type V secretion system 1 25 2.2E-10 T 11-10-2018 IPR024973 ESPR domain APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 TIGRFAM TIGR01901 adhes_NPXG: filamentous hemagglutinin family N-terminal domain 109 206 5.8E-21 T 11-10-2018 IPR008638 Filamentous haemagglutinin, N-terminal APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 SUPERFAMILY SSF51126 82 353 1.07E-62 T 11-10-2018 IPR011050 Pectin lyase fold/virulence factor APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF13332 Haemagluttinin repeat 1886 2054 6.2E-42 T 11-10-2018 IPR025157 Hemagglutinin repeat APJL_0979 b5840f53093be9b0b178048d4cf474db 2597 Pfam PF13332 Haemagluttinin repeat 1644 1791 1.2E-8 T 11-10-2018 IPR025157 Hemagglutinin repeat APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 SUPERFAMILY SSF52540 122 302 1.57E-39 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 191 209 1.4E-9 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 145 163 1.4E-9 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 124 144 1.4E-9 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 1 284 7.3E-128 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 Hamap MF_00900 GTPase HflX [hflX]. 1 314 38.787 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 PIRSF PIRSF006809 1 344 1.1E-126 T 11-10-2018 IPR016496 GTPase HflX GO:0005525 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 Pfam PF16360 GTP-binding GTPase Middle Region 37 116 1.1E-25 T 11-10-2018 IPR032305 GTP-binding protein, middle domain APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 Pfam PF13167 GTP-binding GTPase N-terminal 1 35 2.2E-12 T 11-10-2018 IPR025121 GTPase HflX, N-terminal APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 Pfam PF01926 50S ribosome-binding GTPase 124 242 3.1E-20 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 Gene3D G3DSA:3.40.50.11060 1 61 4.0E-23 T 11-10-2018 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 Gene3D G3DSA:3.40.50.300 121 290 2.6E-38 T 11-10-2018 APJL_2009 52c5dd85024e54ff9963c0fe2271272f 357 SUPERFAMILY SSF54980 293 346 2.37E-5 T 11-10-2018 IPR035647 EF-G domain III/V-like APJL_0331 3a5ce2d86297b9f7692f20616acebd8b 182 Gene3D G3DSA:3.40.80.10 4 182 1.2E-58 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APJL_0331 3a5ce2d86297b9f7692f20616acebd8b 182 SUPERFAMILY SSF55846 4 181 6.94E-67 T 11-10-2018 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APJL_0331 3a5ce2d86297b9f7692f20616acebd8b 182 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 29 169 8.0E-28 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APJL_0331 3a5ce2d86297b9f7692f20616acebd8b 182 SMART SM00644 18 169 1.3E-55 T 11-10-2018 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 Reactome: R-HSA-6803157 APJL_0265 8eae1da94c40b1fecf22a4427ed36d6d 464 Pfam PF02321 Outer membrane efflux protein 281 458 5.3E-26 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APJL_0265 8eae1da94c40b1fecf22a4427ed36d6d 464 Pfam PF02321 Outer membrane efflux protein 62 252 3.0E-24 T 11-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 APJL_0265 8eae1da94c40b1fecf22a4427ed36d6d 464 SUPERFAMILY SSF56954 1 460 2.49E-79 T 11-10-2018 APJL_0265 8eae1da94c40b1fecf22a4427ed36d6d 464 Gene3D G3DSA:1.20.1600.10 52 461 2.3E-84 T 11-10-2018 APJL_0265 8eae1da94c40b1fecf22a4427ed36d6d 464 Gene3D G3DSA:2.20.200.10 99 350 2.3E-84 T 11-10-2018 APJL_1640 6480fab350e903ef52092eb09b5a5a1a 109 Gene3D G3DSA:1.10.3730.20 1 109 6.5E-34 T 11-10-2018 APJL_1640 6480fab350e903ef52092eb09b5a5a1a 109 SUPERFAMILY SSF103481 7 106 1.96E-18 T 11-10-2018 APJL_1640 6480fab350e903ef52092eb09b5a5a1a 109 Pfam PF00893 Small Multidrug Resistance protein 3 94 2.5E-24 T 11-10-2018 IPR000390 Small multidrug resistance protein family GO:0016021 APJL_1822 a05c3ef4f39d2a574be733db85b63ca8 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 4.1E-29 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1822 a05c3ef4f39d2a574be733db85b63ca8 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 11-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1822 a05c3ef4f39d2a574be733db85b63ca8 82 Pfam PF00886 Ribosomal protein S16 8 68 6.2E-23 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1822 a05c3ef4f39d2a574be733db85b63ca8 82 Gene3D G3DSA:3.30.1320.10 1 82 3.0E-29 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1822 a05c3ef4f39d2a574be733db85b63ca8 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 24.398 T 11-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1822 a05c3ef4f39d2a574be733db85b63ca8 82 SUPERFAMILY SSF54565 1 76 5.1E-28 T 11-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0981 d1cee0654311eb6bad48ee1eb1639bd2 778 Pfam PF04453 Organic solvent tolerance protein 298 684 6.1E-106 T 11-10-2018 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 APJL_0981 d1cee0654311eb6bad48ee1eb1639bd2 778 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 2 755 18.79 T 11-10-2018 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 APJL_0981 d1cee0654311eb6bad48ee1eb1639bd2 778 Gene3D G3DSA:2.60.450.10 44 153 2.5E-8 T 11-10-2018 APJL_0981 d1cee0654311eb6bad48ee1eb1639bd2 778 Pfam PF03968 OstA-like protein 51 186 3.8E-24 T 11-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 Gene3D G3DSA:1.10.10.10 1 89 1.0E-31 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 7.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 7.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 7.6E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 2.0E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 Pfam PF03466 LysR substrate binding domain 95 296 7.5E-24 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 Gene3D G3DSA:3.40.190.10 90 291 1.3E-59 T 11-10-2018 APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 Gene3D G3DSA:3.40.190.10 171 267 1.3E-59 T 11-10-2018 APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 SUPERFAMILY SSF53850 90 294 4.48E-40 T 11-10-2018 APJL_1210 32bae5151c72a0c6c88571a68ab7ff0d 299 SUPERFAMILY SSF46785 5 86 4.22E-20 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1706 70be023fc130d7c8d7fc7e6d1d46a7e5 205 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 99 110 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1706 70be023fc130d7c8d7fc7e6d1d46a7e5 205 TIGRFAM TIGR02951 DMSO_dmsB: dimethylsulfoxide reductase, chain B 3 163 4.1E-78 T 11-10-2018 IPR014297 Dimethylsulphoxide reductase, chain B APJL_1706 70be023fc130d7c8d7fc7e6d1d46a7e5 205 Pfam PF13247 4Fe-4S dicluster domain 59 152 2.8E-27 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1706 70be023fc130d7c8d7fc7e6d1d46a7e5 205 Pfam PF12800 4Fe-4S binding domain 10 24 7.2E-4 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1706 70be023fc130d7c8d7fc7e6d1d46a7e5 205 Gene3D G3DSA:3.30.70.20 1 195 7.7E-52 T 11-10-2018 APJL_1706 70be023fc130d7c8d7fc7e6d1d46a7e5 205 SUPERFAMILY SSF54862 1 192 3.24E-65 T 11-10-2018 APJL_1691 5a8b5ab1e8bdf08bfb2711c77f07d77d 158 Pfam PF02810 SEC-C motif 140 154 4.7E-6 T 11-10-2018 IPR004027 SEC-C motif APJL_1691 5a8b5ab1e8bdf08bfb2711c77f07d77d 158 Pfam PF02810 SEC-C motif 7 22 1.7E-5 T 11-10-2018 IPR004027 SEC-C motif APJL_1691 5a8b5ab1e8bdf08bfb2711c77f07d77d 158 Gene3D G3DSA:3.10.450.50 2 157 3.3E-52 T 11-10-2018 APJL_1691 5a8b5ab1e8bdf08bfb2711c77f07d77d 158 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 4 131 25.991 T 11-10-2018 IPR023006 Uncharacterised protein family UPF0225 APJL_1691 5a8b5ab1e8bdf08bfb2711c77f07d77d 158 SUPERFAMILY SSF103642 136 156 3.4E-7 T 11-10-2018 APJL_1691 5a8b5ab1e8bdf08bfb2711c77f07d77d 158 SUPERFAMILY SSF54427 28 132 1.14E-32 T 11-10-2018 IPR032710 NTF2-like domain superfamily APJL_1216 1bf199089519db110199c48e609ac9e4 203 Pfam PF04336 Acyl carrier protein phosphodiesterase 87 179 6.9E-15 T 11-10-2018 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 APJL_1235 41f58a79dc57a42790d6e6a6b5381d5d 333 SUPERFAMILY SSF51735 23 159 2.61E-22 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1235 41f58a79dc57a42790d6e6a6b5381d5d 333 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 313 5.3E-7 T 11-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_1235 41f58a79dc57a42790d6e6a6b5381d5d 333 PIRSF PIRSF000148 8 333 8.3E-52 T 11-10-2018 APJL_1235 41f58a79dc57a42790d6e6a6b5381d5d 333 Gene3D G3DSA:3.30.360.10 133 314 3.4E-49 T 11-10-2018 APJL_1235 41f58a79dc57a42790d6e6a6b5381d5d 333 Gene3D G3DSA:3.40.50.720 16 328 3.4E-49 T 11-10-2018 APJL_1235 41f58a79dc57a42790d6e6a6b5381d5d 333 SUPERFAMILY SSF55347 134 315 4.73E-29 T 11-10-2018 APJL_1024 ba92df30d98fffe57f8a1f621cf618b7 289 PIRSF PIRSF016660 1 289 5.0E-111 T 11-10-2018 IPR008526 Inner membrane protein YedI APJL_1024 ba92df30d98fffe57f8a1f621cf618b7 289 Pfam PF05661 Protein of unknown function (DUF808) 4 279 9.0E-106 T 11-10-2018 IPR008526 Inner membrane protein YedI APJL_0318 13617c07273e08b67eaba9122315045d 284 Pfam PF00892 EamA-like transporter family 143 275 5.8E-8 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_0318 13617c07273e08b67eaba9122315045d 284 Pfam PF00892 EamA-like transporter family 1 133 8.5E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_0318 13617c07273e08b67eaba9122315045d 284 SUPERFAMILY SSF103481 36 135 3.4E-5 T 11-10-2018 APJL_0318 13617c07273e08b67eaba9122315045d 284 SUPERFAMILY SSF103481 180 279 2.62E-11 T 11-10-2018 APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 Gene3D G3DSA:3.40.50.300 327 555 3.5E-67 T 11-10-2018 APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 Pfam PF00005 ABC transporter 359 505 2.7E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 8 536 9.2E-138 T 11-10-2018 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0016021|GO:0034775|GO:0042626|GO:0045454 APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 ProSitePatterns PS00211 ABC transporters family signature. 478 492 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 SUPERFAMILY SSF90123 7 322 8.89E-41 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 Gene3D G3DSA:1.20.1560.10 4 321 4.0E-27 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 SMART SM00382 368 552 5.6E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 Pfam PF00664 ABC transporter transmembrane region 59 270 1.0E-7 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APJL_0833 af5894e72b9dd7e9db476a16bf74ce44 555 SUPERFAMILY SSF52540 332 554 6.36E-62 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0061 af7aed8c99fd071dfb888987c006df8a 159 Gene3D G3DSA:3.40.1280.10 1 158 7.9E-67 T 11-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal APJL_0061 af7aed8c99fd071dfb888987c006df8a 159 SUPERFAMILY SSF75217 2 152 5.3E-43 T 11-10-2018 IPR029028 Alpha/beta knot methyltransferases APJL_0061 af7aed8c99fd071dfb888987c006df8a 159 Pfam PF00588 SpoU rRNA Methylase family 2 142 7.1E-32 T 11-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 APJL_0061 af7aed8c99fd071dfb888987c006df8a 159 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 5.0E-70 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 APJL_0061 af7aed8c99fd071dfb888987c006df8a 159 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 33.22 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 APJL_0061 af7aed8c99fd071dfb888987c006df8a 159 PIRSF PIRSF029256 1 154 1.5E-68 T 11-10-2018 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 APJL_1730 f874ecffc26b9b6c154f94e1674f4db1 226 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 213 6.7E-24 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_1730 f874ecffc26b9b6c154f94e1674f4db1 226 SMART SM00934 5 217 2.8E-29 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_1730 f874ecffc26b9b6c154f94e1674f4db1 226 SUPERFAMILY SSF51366 1 225 7.07E-34 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_1730 f874ecffc26b9b6c154f94e1674f4db1 226 Gene3D G3DSA:3.20.20.70 1 226 2.1E-69 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1811 3e4e4b204f376c6854b320e5255be4cc 117 Gene3D G3DSA:3.30.420.100 1 117 2.8E-43 T 11-10-2018 APJL_1811 3e4e4b204f376c6854b320e5255be4cc 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 1.6E-44 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1811 3e4e4b204f376c6854b320e5255be4cc 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 25.213 T 11-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1811 3e4e4b204f376c6854b320e5255be4cc 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 3.9E-42 T 11-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1811 3e4e4b204f376c6854b320e5255be4cc 117 SUPERFAMILY SSF53137 3 115 4.58E-51 T 11-10-2018 APJL_0866 f68cb762e888a4575ec607b12f30e91c 530 SUPERFAMILY SSF53850 26 527 2.17E-149 T 11-10-2018 APJL_0866 f68cb762e888a4575ec607b12f30e91c 530 Gene3D G3DSA:3.90.76.10 40 207 9.1E-190 T 11-10-2018 APJL_0866 f68cb762e888a4575ec607b12f30e91c 530 Gene3D G3DSA:3.40.190.10 208 518 9.1E-190 T 11-10-2018 APJL_0866 f68cb762e888a4575ec607b12f30e91c 530 Gene3D G3DSA:3.10.105.10 289 505 9.1E-190 T 11-10-2018 APJL_0866 f68cb762e888a4575ec607b12f30e91c 530 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 70 448 7.6E-100 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APJL_0866 f68cb762e888a4575ec607b12f30e91c 530 PIRSF PIRSF002741 19 530 1.7E-118 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_1076 4911f35c582b8ada4005171946bfaece 115 Pfam PF04076 Bacterial OB fold (BOF) protein 20 114 3.3E-30 T 11-10-2018 IPR005220 Bacterial OB-fold APJL_1076 4911f35c582b8ada4005171946bfaece 115 Gene3D G3DSA:2.40.50.200 13 115 4.4E-31 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily APJL_1076 4911f35c582b8ada4005171946bfaece 115 SUPERFAMILY SSF101756 10 114 1.83E-28 T 11-10-2018 IPR036700 Bacterial OB-fold superfamily APJL_1524 b3743714aa167270bafd2061dad03b87 426 TIGRFAM TIGR00260 thrC: threonine synthase 50 396 8.0E-123 T 11-10-2018 IPR004450 Threonine synthase-like APJL_1524 b3743714aa167270bafd2061dad03b87 426 Gene3D G3DSA:3.90.1380.10 1 79 9.4E-29 T 11-10-2018 IPR037158 Threonine synthase, N-terminal domain superfamily APJL_1524 b3743714aa167270bafd2061dad03b87 426 SUPERFAMILY SSF53686 1 423 1.57E-131 T 11-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme APJL_1524 b3743714aa167270bafd2061dad03b87 426 Gene3D G3DSA:3.40.50.1100 83 392 1.1E-138 T 11-10-2018 APJL_1524 b3743714aa167270bafd2061dad03b87 426 Gene3D G3DSA:3.40.50.1100 101 399 1.1E-138 T 11-10-2018 APJL_1524 b3743714aa167270bafd2061dad03b87 426 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 95 109 - T 11-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 APJL_1524 b3743714aa167270bafd2061dad03b87 426 Pfam PF14821 Threonine synthase N terminus 10 78 3.4E-8 T 11-10-2018 IPR029144 Threonine synthase, N-terminal APJL_1524 b3743714aa167270bafd2061dad03b87 426 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 85 367 6.6E-24 T 11-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme APJL_1926 402be4894c59373fb870e889fd820c0b 986 SUPERFAMILY SSF63411 528 754 8.93E-34 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APJL_1926 402be4894c59373fb870e889fd820c0b 986 Pfam PF05193 Peptidase M16 inactive domain 240 419 1.2E-16 T 11-10-2018 IPR007863 Peptidase M16, C-terminal APJL_1926 402be4894c59373fb870e889fd820c0b 986 Pfam PF05193 Peptidase M16 inactive domain 708 883 3.4E-7 T 11-10-2018 IPR007863 Peptidase M16, C-terminal APJL_1926 402be4894c59373fb870e889fd820c0b 986 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 98 121 - T 11-10-2018 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 APJL_1926 402be4894c59373fb870e889fd820c0b 986 SUPERFAMILY SSF63411 770 983 9.5E-43 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APJL_1926 402be4894c59373fb870e889fd820c0b 986 SUPERFAMILY SSF63411 288 526 8.77E-59 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APJL_1926 402be4894c59373fb870e889fd820c0b 986 Pfam PF16187 Middle or third domain of peptidase_M16 424 701 3.5E-49 T 11-10-2018 IPR032632 Peptidase M16, middle/third domain APJL_1926 402be4894c59373fb870e889fd820c0b 986 Gene3D G3DSA:3.30.830.10 47 293 5.4E-74 T 11-10-2018 APJL_1926 402be4894c59373fb870e889fd820c0b 986 Gene3D G3DSA:3.30.830.10 295 526 1.8E-52 T 11-10-2018 APJL_1926 402be4894c59373fb870e889fd820c0b 986 SUPERFAMILY SSF63411 56 286 9.45E-48 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APJL_1926 402be4894c59373fb870e889fd820c0b 986 Gene3D G3DSA:3.30.830.10 677 944 5.6E-103 T 11-10-2018 APJL_1926 402be4894c59373fb870e889fd820c0b 986 Gene3D G3DSA:3.30.830.10 528 912 5.6E-103 T 11-10-2018 APJL_1926 402be4894c59373fb870e889fd820c0b 986 Pfam PF00675 Insulinase (Peptidase family M16) 78 196 8.2E-35 T 11-10-2018 IPR011765 Peptidase M16, N-terminal APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 PRINTS PR00474 Glutamate 5-kinase family signature 57 71 6.2E-6 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 PRINTS PR00474 Glutamate 5-kinase family signature 181 208 6.2E-6 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 PRINTS PR00474 Glutamate 5-kinase family signature 234 254 6.2E-6 T 11-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 TIGRFAM TIGR00761 argB: acetylglutamate kinase 28 258 7.5E-68 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 PIRSF PIRSF000728 11 284 4.3E-95 T 11-10-2018 IPR004662 Acetylglutamate kinase family GO:0005737 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 Hamap MF_00082 Acetylglutamate kinase [argB]. 25 277 47.352 T 11-10-2018 IPR037528 Acetylglutamate kinase ArgB GO:0003991|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 Pfam PF00696 Amino acid kinase family 26 260 5.8E-39 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 Gene3D G3DSA:3.40.1160.10 7 284 8.5E-82 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_0248 09acb83ab6378c4068cf8acb5a1285da 284 SUPERFAMILY SSF53633 6 283 7.59E-74 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_0272 77be828c17a4bb278b72d04fc0535536 302 Pfam PF00005 ABC transporter 21 164 1.3E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0272 77be828c17a4bb278b72d04fc0535536 302 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0272 77be828c17a4bb278b72d04fc0535536 302 SMART SM00382 29 212 2.8E-12 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0272 77be828c17a4bb278b72d04fc0535536 302 Gene3D G3DSA:3.40.50.300 1 241 3.3E-64 T 11-10-2018 APJL_0272 77be828c17a4bb278b72d04fc0535536 302 SUPERFAMILY SSF52540 3 232 3.38E-61 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0032 c52eef1ce58d724344ae1fce1dab4a93 155 Pfam PF05656 Protein of unknown function (DUF805) 12 153 4.5E-21 T 11-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 APJL_1365 542ecd0749f9f14a15d62e490b2ea0fd 197 Pfam PF03602 Conserved hypothetical protein 95 17 194 1.8E-61 T 11-10-2018 APJL_1365 542ecd0749f9f14a15d62e490b2ea0fd 197 PIRSF PIRSF004553 16 197 1.7E-54 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 APJL_1365 542ecd0749f9f14a15d62e490b2ea0fd 197 Gene3D G3DSA:3.40.50.150 5 196 3.9E-60 T 11-10-2018 APJL_1365 542ecd0749f9f14a15d62e490b2ea0fd 197 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 11 195 6.4E-65 T 11-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 APJL_1365 542ecd0749f9f14a15d62e490b2ea0fd 197 SUPERFAMILY SSF53335 17 190 2.51E-48 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1619 1fa5a23c5fa8060e9654b9b4cd6047cd 485 Pfam PF00005 ABC transporter 272 423 8.1E-22 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1619 1fa5a23c5fa8060e9654b9b4cd6047cd 485 Gene3D G3DSA:3.40.50.300 1 240 2.0E-34 T 11-10-2018 APJL_1619 1fa5a23c5fa8060e9654b9b4cd6047cd 485 SUPERFAMILY SSF52540 246 460 1.98E-37 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1619 1fa5a23c5fa8060e9654b9b4cd6047cd 485 Pfam PF00005 ABC transporter 23 161 3.4E-15 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1619 1fa5a23c5fa8060e9654b9b4cd6047cd 485 SMART SM00382 28 215 1.1E-7 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1619 1fa5a23c5fa8060e9654b9b4cd6047cd 485 SMART SM00382 280 473 6.5E-4 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1619 1fa5a23c5fa8060e9654b9b4cd6047cd 485 SUPERFAMILY SSF52540 4 223 1.43E-32 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1619 1fa5a23c5fa8060e9654b9b4cd6047cd 485 Gene3D G3DSA:3.40.50.300 250 471 3.0E-46 T 11-10-2018 APJL_1148 ca333ca91aa64728674efc30ffc9e3cf 124 PIRSF PIRSF000029 1 124 6.3E-22 T 11-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 APJL_1148 ca333ca91aa64728674efc30ffc9e3cf 124 Gene3D G3DSA:1.20.120.10 23 124 1.9E-15 T 11-10-2018 APJL_1148 ca333ca91aa64728674efc30ffc9e3cf 124 SUPERFAMILY SSF47175 23 124 2.05E-33 T 11-10-2018 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 APJL_1148 ca333ca91aa64728674efc30ffc9e3cf 124 Pfam PF07361 Cytochrome b562 24 124 1.4E-30 T 11-10-2018 IPR009155 Cytochrome b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900|GO:0042597 APJL_1773 c2e9a2912d262fdaf0a1fce4694bf9ff 237 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 139 147 - T 11-10-2018 IPR018120 Glycoside hydrolase family 1, active site APJL_1773 c2e9a2912d262fdaf0a1fce4694bf9ff 237 Gene3D G3DSA:2.40.50.580 1 79 9.4E-27 T 11-10-2018 APJL_1773 c2e9a2912d262fdaf0a1fce4694bf9ff 237 Pfam PF03749 Sugar fermentation stimulation protein 12 220 3.4E-76 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein APJL_1773 c2e9a2912d262fdaf0a1fce4694bf9ff 237 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 2 221 3.1E-79 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein APJL_1773 c2e9a2912d262fdaf0a1fce4694bf9ff 237 Gene3D G3DSA:3.40.1350.60 80 231 4.1E-55 T 11-10-2018 APJL_1773 c2e9a2912d262fdaf0a1fce4694bf9ff 237 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 234 55.921 T 11-10-2018 IPR005224 Sugar fermentation stimulation protein APJL_1532 22575b0ce9753e00069abeb85e1b8c8c 147 Pfam PF01476 LysM domain 96 144 1.9E-12 T 11-10-2018 IPR018392 LysM domain APJL_1532 22575b0ce9753e00069abeb85e1b8c8c 147 SUPERFAMILY SSF54106 94 144 3.66E-8 T 11-10-2018 APJL_1532 22575b0ce9753e00069abeb85e1b8c8c 147 SMART SM00257 95 144 9.6E-12 T 11-10-2018 IPR018392 LysM domain APJL_1532 22575b0ce9753e00069abeb85e1b8c8c 147 Gene3D G3DSA:3.10.350.10 95 143 1.6E-14 T 11-10-2018 IPR036779 LysM domain superfamily APJL_1532 22575b0ce9753e00069abeb85e1b8c8c 147 Pfam PF04972 BON domain 20 84 2.4E-10 T 11-10-2018 IPR007055 BON domain APJL_0236 6797f4d6ec952ce0875255b2e78cbb69 137 SUPERFAMILY SSF53098 3 135 1.52E-42 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0236 6797f4d6ec952ce0875255b2e78cbb69 137 Pfam PF03652 Holliday junction resolvase 4 135 6.7E-43 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APJL_0236 6797f4d6ec952ce0875255b2e78cbb69 137 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 6 135 9.5E-58 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APJL_0236 6797f4d6ec952ce0875255b2e78cbb69 137 Gene3D G3DSA:3.30.420.140 1 137 3.3E-45 T 11-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 APJL_0236 6797f4d6ec952ce0875255b2e78cbb69 137 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 3 137 24.071 T 11-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 APJL_0236 6797f4d6ec952ce0875255b2e78cbb69 137 SMART SM00732 3 103 2.5E-40 T 11-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 APJL_0125 325bc46f82dd92ca71eff6cfa66c0eba 249 SUPERFAMILY SSF56112 22 225 6.64E-31 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APJL_0125 325bc46f82dd92ca71eff6cfa66c0eba 249 Gene3D G3DSA:3.90.1200.10 93 248 2.7E-21 T 11-10-2018 APJL_0125 325bc46f82dd92ca71eff6cfa66c0eba 249 Pfam PF01636 Phosphotransferase enzyme family 31 219 2.9E-15 T 11-10-2018 IPR002575 Aminoglycoside phosphotransferase APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 SUPERFAMILY SSF159127 1 83 1.44E-24 T 11-10-2018 IPR037254 HupF/HypC superfamily APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 ProSitePatterns PS01097 Hydrogenases expression/synthesis hupF/hypC family signature. 1 9 - T 11-10-2018 IPR019812 Hydrogenase assembly chaperone, conserved site APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 79 2.7E-26 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 Gene3D G3DSA:2.40.50.970 1 81 1.1E-25 T 11-10-2018 IPR037254 HupF/HypC superfamily APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 Pfam PF01455 HupF/HypC family 1 72 5.8E-26 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 45 61 2.2E-21 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 2 9 2.2E-21 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 63 75 2.2E-21 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APJL_1355 5df39c7ca4971ade952d41f89b1ac97b 92 PRINTS PR00445 HupF/HypC hydrogenase expression/synthesis family signature 20 36 2.2E-21 T 11-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 92 - T 11-10-2018 IPR020583 Inositol monophosphatase, metal-binding site APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 Gene3D G3DSA:3.40.190.80 141 267 1.1E-35 T 11-10-2018 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 SUPERFAMILY SSF56655 1 261 5.89E-82 T 11-10-2018 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 102 121 1.2E-20 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 15 37 1.2E-20 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 1.2E-20 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 155 181 1.2E-20 T 11-10-2018 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 Pfam PF00459 Inositol monophosphatase family 1 257 3.7E-71 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 Gene3D G3DSA:3.30.540.10 1 137 1.5E-51 T 11-10-2018 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 36 56 3.2E-52 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 128 151 3.2E-52 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 3.2E-52 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 3.2E-52 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 3.2E-52 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 58 74 3.2E-52 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_0207 bccfcb15336935f4dfce2ae1e60e7aea 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 11-10-2018 IPR020550 Inositol monophosphatase, conserved site GO:0046854 APJL_1546 029a3f0f6c78f00ae1ec54a67d314a19 314 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 286 38.702 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 APJL_1546 029a3f0f6c78f00ae1ec54a67d314a19 314 Pfam PF02401 LytB protein 3 282 1.2E-91 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 APJL_1546 029a3f0f6c78f00ae1ec54a67d314a19 314 Gene3D G3DSA:3.40.50.11270 12 96 2.8E-112 T 11-10-2018 APJL_1546 029a3f0f6c78f00ae1ec54a67d314a19 314 Gene3D G3DSA:3.40.1010.20 97 196 2.8E-112 T 11-10-2018 APJL_1546 029a3f0f6c78f00ae1ec54a67d314a19 314 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 284 5.0E-101 T 11-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 APJL_1546 029a3f0f6c78f00ae1ec54a67d314a19 314 Gene3D G3DSA:3.40.1010.20 6 282 2.8E-112 T 11-10-2018 APJL_0577 76fea14b955bde5829bf429015e873bc 73 Gene3D G3DSA:1.10.3390.10 1 73 3.1E-30 T 11-10-2018 IPR023202 YejL-like superfamily APJL_0577 76fea14b955bde5829bf429015e873bc 73 Pfam PF07208 Protein of unknown function (DUF1414) 26 70 8.4E-24 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 APJL_0577 76fea14b955bde5829bf429015e873bc 73 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 5 70 1.0E-24 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 APJL_0577 76fea14b955bde5829bf429015e873bc 73 PIRSF PIRSF006188 1 73 7.3E-35 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 APJL_0577 76fea14b955bde5829bf429015e873bc 73 SUPERFAMILY SSF158651 1 72 5.89E-26 T 11-10-2018 IPR023202 YejL-like superfamily APJL_0577 76fea14b955bde5829bf429015e873bc 73 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 72 22.664 T 11-10-2018 IPR009857 Uncharacterised protein family UPF0352 APJL_0649 4446efadfe3200c2915571ba39158812 164 Pfam PF00731 AIR carboxylase 7 154 5.1E-64 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APJL_0649 4446efadfe3200c2915571ba39158812 164 PIRSF PIRSF001338 2 163 1.8E-69 T 11-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 APJL_0649 4446efadfe3200c2915571ba39158812 164 SMART SM01001 5 156 4.2E-103 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APJL_0649 4446efadfe3200c2915571ba39158812 164 SUPERFAMILY SSF52255 6 162 5.49E-67 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 APJL_0649 4446efadfe3200c2915571ba39158812 164 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 7 160 32.369 T 11-10-2018 IPR033747 Class I PurE APJL_0649 4446efadfe3200c2915571ba39158812 164 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 7 161 4.3E-65 T 11-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 APJL_0649 4446efadfe3200c2915571ba39158812 164 Gene3D G3DSA:3.40.50.7700 1 164 1.9E-75 T 11-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 APJL_1579 58847ffee93384682b31145598a3aa2d 423 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 6 189 4.8E-54 T 11-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APJL_1579 58847ffee93384682b31145598a3aa2d 423 SUPERFAMILY SSF48179 207 300 2.55E-28 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_1579 58847ffee93384682b31145598a3aa2d 423 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 207 294 1.2E-26 T 11-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APJL_1579 58847ffee93384682b31145598a3aa2d 423 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 325 421 2.0E-16 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APJL_1579 58847ffee93384682b31145598a3aa2d 423 PIRSF PIRSF000124 5 422 1.5E-75 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APJL_1579 58847ffee93384682b31145598a3aa2d 423 SUPERFAMILY SSF51735 6 200 1.36E-45 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1579 58847ffee93384682b31145598a3aa2d 423 PIRSF PIRSF500136 1 423 3.1E-144 T 11-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 APJL_1579 58847ffee93384682b31145598a3aa2d 423 Gene3D G3DSA:3.40.50.720 1 205 8.0E-63 T 11-10-2018 APJL_1579 58847ffee93384682b31145598a3aa2d 423 SUPERFAMILY SSF52413 318 421 1.19E-22 T 11-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 APJL_1579 58847ffee93384682b31145598a3aa2d 423 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 6 417 1.7E-115 T 11-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 APJL_1579 58847ffee93384682b31145598a3aa2d 423 SMART SM00984 325 422 1.6E-22 T 11-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 APJL_1579 58847ffee93384682b31145598a3aa2d 423 Gene3D G3DSA:3.40.50.720 206 423 1.3E-57 T 11-10-2018 APJL_0890 6fdd4ac3fc8238477d2c88b7a4fd7c62 400 Pfam PF00482 Type II secretion system (T2SS), protein F 64 186 2.0E-23 T 11-10-2018 IPR018076 Type II secretion system F domain APJL_0890 6fdd4ac3fc8238477d2c88b7a4fd7c62 400 Pfam PF00482 Type II secretion system (T2SS), protein F 267 389 3.5E-26 T 11-10-2018 IPR018076 Type II secretion system F domain APJL_0890 6fdd4ac3fc8238477d2c88b7a4fd7c62 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 158 186 2.9E-13 T 11-10-2018 IPR003004 GspF/PilC family APJL_0890 6fdd4ac3fc8238477d2c88b7a4fd7c62 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 59 71 2.9E-13 T 11-10-2018 IPR003004 GspF/PilC family APJL_0890 6fdd4ac3fc8238477d2c88b7a4fd7c62 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 378 397 2.9E-13 T 11-10-2018 IPR003004 GspF/PilC family APJL_0890 6fdd4ac3fc8238477d2c88b7a4fd7c62 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 362 376 2.9E-13 T 11-10-2018 IPR003004 GspF/PilC family APJL_0890 6fdd4ac3fc8238477d2c88b7a4fd7c62 400 Gene3D G3DSA:1.20.81.30 48 165 8.9E-21 T 11-10-2018 APJL_0890 6fdd4ac3fc8238477d2c88b7a4fd7c62 400 Gene3D G3DSA:1.20.81.30 251 361 9.4E-23 T 11-10-2018 APJL_0513 992cb63d8f4bc7ea46912d48dabddc13 304 Pfam PF08443 RimK-like ATP-grasp domain 112 299 1.2E-58 T 11-10-2018 IPR013651 ATP-grasp fold, RimK-type Reactome: R-HSA-70614 APJL_0513 992cb63d8f4bc7ea46912d48dabddc13 304 Gene3D G3DSA:3.30.470.80 196 303 2.8E-41 T 11-10-2018 APJL_0513 992cb63d8f4bc7ea46912d48dabddc13 304 SUPERFAMILY SSF56059 113 302 6.19E-42 T 11-10-2018 APJL_0513 992cb63d8f4bc7ea46912d48dabddc13 304 Gene3D G3DSA:3.30.1490.20 130 194 6.5E-12 T 11-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 APJL_0513 992cb63d8f4bc7ea46912d48dabddc13 304 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 299 6.5E-81 T 11-10-2018 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 Reactome: R-HSA-70614 APJL_0513 992cb63d8f4bc7ea46912d48dabddc13 304 Gene3D G3DSA:3.40.50.20 1 129 9.7E-25 T 11-10-2018 APJL_1906 32d6ce988e6a279556373c783af49d45 262 SUPERFAMILY SSF53448 20 246 6.56E-16 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1906 32d6ce988e6a279556373c783af49d45 262 Gene3D G3DSA:3.90.550.20 50 253 1.5E-11 T 11-10-2018 APJL_1906 32d6ce988e6a279556373c783af49d45 262 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 76 159 1.6E-12 T 11-10-2018 IPR007577 Glycosyltransferase, DXD sugar-binding motif APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 2.1E-5 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 2.1E-5 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 Gene3D G3DSA:1.10.10.10 1 56 1.4E-5 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 11-10-2018 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 Pfam PF00455 DeoR C terminal sensor domain 76 231 2.8E-39 T 11-10-2018 IPR014036 DeoR C-terminal sensor domain APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 SMART SM00420 9 61 1.4E-14 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 SUPERFAMILY SSF46785 7 66 3.13E-13 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 SMART SM01134 72 232 1.1E-50 T 11-10-2018 APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 SUPERFAMILY SSF100950 75 232 6.03E-28 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_1665 f9c7f16f94d708ace0c52cb5b80c9692 252 Pfam PF08220 DeoR-like helix-turn-helix domain 9 62 4.4E-14 T 11-10-2018 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 APJL_1246 67939ca2b29aa3f8f5fe41a2faba5a24 294 Pfam PF07148 Maltose operon periplasmic protein precursor (MalM) 61 194 7.7E-46 T 11-10-2018 IPR010794 Maltose operon periplasmic GO:0008643|GO:0042597 APJL_1962 dea36bae78d8220a9fb1660649ea5948 470 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 32 429 6.4E-99 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 APJL_1962 dea36bae78d8220a9fb1660649ea5948 470 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 151 176 - T 11-10-2018 IPR018212 Sodium/solute symporter, conserved site APJL_1962 dea36bae78d8220a9fb1660649ea5948 470 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 2 469 1.4E-214 T 11-10-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0036376 APJL_1962 dea36bae78d8220a9fb1660649ea5948 470 Pfam PF00474 Sodium:solute symporter family 32 429 1.1E-121 T 11-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 APJL_1962 dea36bae78d8220a9fb1660649ea5948 470 Gene3D G3DSA:1.20.1730.10 22 469 9.4E-80 T 11-10-2018 IPR038377 Sodium/glucose symporter superfamily APJL_0654 a82c395a82c848085d86f111c407a9e5 1005 Pfam PF04851 Type III restriction enzyme, res subunit 60 252 1.3E-18 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APJL_0654 a82c395a82c848085d86f111c407a9e5 1005 SUPERFAMILY SSF52540 88 265 6.23E-14 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0654 a82c395a82c848085d86f111c407a9e5 1005 Gene3D G3DSA:3.40.50.300 72 275 8.9E-14 T 11-10-2018 APJL_0654 a82c395a82c848085d86f111c407a9e5 1005 SUPERFAMILY SSF52540 91 576 4.09E-8 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0654 a82c395a82c848085d86f111c407a9e5 1005 Gene3D G3DSA:3.40.50.300 415 589 8.9E-7 T 11-10-2018 APJL_0344 5c3c3bc7025e0defbbb07554e4b398c2 151 Pfam PF00293 NUDIX domain 9 114 6.6E-13 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APJL_0344 5c3c3bc7025e0defbbb07554e4b398c2 151 SUPERFAMILY SSF55811 4 119 2.98E-26 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_0344 5c3c3bc7025e0defbbb07554e4b398c2 151 Gene3D G3DSA:3.90.79.10 1 151 4.4E-35 T 11-10-2018 APJL_0344 5c3c3bc7025e0defbbb07554e4b398c2 151 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APJL_1781 993de0f7f749a05e0309923f3f199e9e 102 Gene3D G3DSA:1.10.260.40 41 96 1.6E-5 T 11-10-2018 APJL_1781 993de0f7f749a05e0309923f3f199e9e 102 Pfam PF01381 Helix-turn-helix 53 95 1.1E-6 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_1781 993de0f7f749a05e0309923f3f199e9e 102 SUPERFAMILY SSF47413 36 95 1.38E-9 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_1781 993de0f7f749a05e0309923f3f199e9e 102 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 11 95 6.2E-36 T 11-10-2018 IPR014057 Uncharacterized protein HI1420 APJL_0317 8b3e3f2dad83b691cb9bb8462e02791f 152 PRINTS PR01021 OMPA domain signature 84 99 2.7E-19 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_0317 8b3e3f2dad83b691cb9bb8462e02791f 152 PRINTS PR01021 OMPA domain signature 99 115 2.7E-19 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_0317 8b3e3f2dad83b691cb9bb8462e02791f 152 PRINTS PR01021 OMPA domain signature 55 77 2.7E-19 T 11-10-2018 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 APJL_0317 8b3e3f2dad83b691cb9bb8462e02791f 152 Hamap MF_02204 Peptidoglycan-associated lipoprotein [pal]. 2 152 28.097 T 11-10-2018 IPR039001 Peptidoglycan-associated lipoprotein GO:0009279|GO:0051301 APJL_0317 8b3e3f2dad83b691cb9bb8462e02791f 152 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 52 152 7.4E-39 T 11-10-2018 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal GO:0009279 APJL_0317 8b3e3f2dad83b691cb9bb8462e02791f 152 SUPERFAMILY SSF103088 49 151 2.62E-30 T 11-10-2018 IPR036737 OmpA-like domain superfamily APJL_0317 8b3e3f2dad83b691cb9bb8462e02791f 152 Gene3D G3DSA:3.30.1330.60 23 152 5.9E-35 T 11-10-2018 IPR036737 OmpA-like domain superfamily APJL_0317 8b3e3f2dad83b691cb9bb8462e02791f 152 Pfam PF00691 OmpA family 54 146 7.4E-19 T 11-10-2018 IPR006665 OmpA-like domain APJL_0837 1e1f0607bf2b1bad562754c55bca51e6 608 Gene3D G3DSA:2.40.160.50 295 608 2.9E-100 T 11-10-2018 APJL_0837 1e1f0607bf2b1bad562754c55bca51e6 608 Gene3D G3DSA:3.10.20.310 220 294 1.2E-16 T 11-10-2018 APJL_0837 1e1f0607bf2b1bad562754c55bca51e6 608 Pfam PF17243 POTRA domain TamA domain 1 53 129 1.2E-14 T 11-10-2018 IPR035243 TamA, POTRA domain 1 APJL_0837 1e1f0607bf2b1bad562754c55bca51e6 608 Gene3D G3DSA:3.10.20.310 49 130 6.2E-12 T 11-10-2018 APJL_0837 1e1f0607bf2b1bad562754c55bca51e6 608 Pfam PF07244 Surface antigen variable number repeat 220 289 8.1E-7 T 11-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 APJL_0837 1e1f0607bf2b1bad562754c55bca51e6 608 Gene3D G3DSA:3.10.20.310 134 219 4.3E-30 T 11-10-2018 APJL_0837 1e1f0607bf2b1bad562754c55bca51e6 608 Pfam PF01103 Surface antigen 323 606 4.1E-32 T 11-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 APJL_1747 f6cbeb0a5aa27579103f317a472ef99f 451 Pfam PF03611 PTS system sugar-specific permease component 10 405 4.6E-144 T 11-10-2018 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 APJL_0816 8eb8802b6aa4e0ce702d9aabc76feaac 491 Pfam PF10150 Ribonuclease E/G family 125 394 7.4E-103 T 11-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 APJL_0816 8eb8802b6aa4e0ce702d9aabc76feaac 491 SUPERFAMILY SSF50249 40 129 5.42E-20 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0816 8eb8802b6aa4e0ce702d9aabc76feaac 491 Gene3D G3DSA:2.40.50.140 32 128 5.8E-32 T 11-10-2018 APJL_0816 8eb8802b6aa4e0ce702d9aabc76feaac 491 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 427 1.0E-171 T 11-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 APJL_0816 8eb8802b6aa4e0ce702d9aabc76feaac 491 Pfam PF00575 S1 RNA binding domain 39 110 3.0E-6 T 11-10-2018 IPR003029 S1 domain GO:0003676 APJL_0816 8eb8802b6aa4e0ce702d9aabc76feaac 491 SMART SM00316 38 123 1.1E-10 T 11-10-2018 IPR022967 RNA-binding domain, S1 APJL_0816 8eb8802b6aa4e0ce702d9aabc76feaac 491 Gene3D G3DSA:3.40.1260.20 404 491 6.9E-12 T 11-10-2018 APJL_1260 9581f11402c2d047097c964faa2d43a7 266 Gene3D G3DSA:3.40.50.300 2 261 1.0E-58 T 11-10-2018 APJL_1260 9581f11402c2d047097c964faa2d43a7 266 SMART SM00382 37 226 7.7E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1260 9581f11402c2d047097c964faa2d43a7 266 SUPERFAMILY SSF52540 2 249 1.55E-50 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1260 9581f11402c2d047097c964faa2d43a7 266 Pfam PF00005 ABC transporter 28 175 1.1E-27 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1768 a13ee31902de9070e2850dc580afe1fc 138 Pfam PF04224 Protein of unknown function, DUF417 2 136 8.1E-25 T 11-10-2018 IPR007339 Inner membrane protein RclC-like APJL_0057 d40aba409735e4283736577ae283d735 295 Gene3D G3DSA:2.40.30.160 164 285 1.8E-34 T 11-10-2018 APJL_0057 d40aba409735e4283736577ae283d735 295 SUPERFAMILY SSF103025 15 210 4.4E-48 T 11-10-2018 APJL_0057 d40aba409735e4283736577ae283d735 295 Gene3D G3DSA:3.30.70.1400 22 107 4.4E-23 T 11-10-2018 APJL_0057 d40aba409735e4283736577ae283d735 295 Pfam PF01571 Aminomethyltransferase folate-binding domain 19 125 1.0E-8 T 11-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain APJL_0057 d40aba409735e4283736577ae283d735 295 PIRSF PIRSF006487 14 142 2.4E-9 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 APJL_0057 d40aba409735e4283736577ae283d735 295 PIRSF PIRSF006487 153 226 12.0 T 11-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 APJL_0057 d40aba409735e4283736577ae283d735 295 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 155 219 6.1E-22 T 11-10-2018 IPR017703 YgfZ/GcvT conserved site APJL_0057 d40aba409735e4283736577ae283d735 295 SUPERFAMILY SSF101790 212 292 9.15E-20 T 11-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal APJL_0261 7ac2c5601bf27e9237c9695b9c6f1fcc 639 Gene3D G3DSA:3.40.50.300 129 372 5.1E-69 T 11-10-2018 APJL_0261 7ac2c5601bf27e9237c9695b9c6f1fcc 639 SUPERFAMILY SSF52540 301 629 9.74E-48 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0261 7ac2c5601bf27e9237c9695b9c6f1fcc 639 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 7 631 2.1E-170 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 APJL_0261 7ac2c5601bf27e9237c9695b9c6f1fcc 639 Pfam PF13604 AAA domain 174 332 7.9E-30 T 11-10-2018 APJL_0261 7ac2c5601bf27e9237c9695b9c6f1fcc 639 Gene3D G3DSA:1.10.10.1020 1 127 5.1E-11 T 11-10-2018 APJL_0261 7ac2c5601bf27e9237c9695b9c6f1fcc 639 Pfam PF13538 UvrD-like helicase C-terminal domain 569 615 2.2E-15 T 11-10-2018 IPR027785 UvrD-like helicase C-terminal domain APJL_0261 7ac2c5601bf27e9237c9695b9c6f1fcc 639 SUPERFAMILY SSF52540 7 377 2.09E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0261 7ac2c5601bf27e9237c9695b9c6f1fcc 639 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 14 634 44.377 T 11-10-2018 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 APJL_0832 bdf0fd06093d232e8670c997f943e5bf 210 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 208 33.873 T 11-10-2018 IPR007451 High frequency lysogenization protein HflD APJL_0832 bdf0fd06093d232e8670c997f943e5bf 210 SUPERFAMILY SSF101322 1 209 2.22E-76 T 11-10-2018 IPR035932 HflD-like superfamily APJL_0832 bdf0fd06093d232e8670c997f943e5bf 210 Pfam PF04356 Protein of unknown function (DUF489) 7 200 4.7E-72 T 11-10-2018 IPR007451 High frequency lysogenization protein HflD APJL_0832 bdf0fd06093d232e8670c997f943e5bf 210 Gene3D G3DSA:1.10.3890.10 1 210 1.0E-71 T 11-10-2018 IPR035932 HflD-like superfamily APJL_0832 bdf0fd06093d232e8670c997f943e5bf 210 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 199 4.0E-88 T 11-10-2018 APJL_0839 fbdffd927d2254bac73f7b0aa2b60382 399 Gene3D G3DSA:2.70.70.10 259 398 8.2E-38 T 11-10-2018 IPR011055 Duplicated hybrid motif APJL_0839 fbdffd927d2254bac73f7b0aa2b60382 399 Pfam PF01551 Peptidase family M23 301 394 5.3E-27 T 11-10-2018 IPR016047 Peptidase M23 APJL_0839 fbdffd927d2254bac73f7b0aa2b60382 399 SUPERFAMILY SSF51261 218 397 3.14E-46 T 11-10-2018 IPR011055 Duplicated hybrid motif APJL_2089 3118e4c3efdc0d8a0201ed1129b1a4a1 390 Pfam PF12704 MacB-like periplasmic core domain 28 228 8.8E-11 T 11-10-2018 IPR025857 MacB-like periplasmic core domain APJL_2089 3118e4c3efdc0d8a0201ed1129b1a4a1 390 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 390 7.1E-120 T 11-10-2018 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 APJL_2089 3118e4c3efdc0d8a0201ed1129b1a4a1 390 Pfam PF02687 FtsX-like permease family 289 383 2.0E-13 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APJL_0657 a1138031084c0b4fc788bfecf3aa3257 1091 Pfam PF00176 SNF2 family N-terminal domain 261 416 1.2E-13 T 11-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 APJL_0657 a1138031084c0b4fc788bfecf3aa3257 1091 SUPERFAMILY SSF52540 297 860 4.32E-33 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0657 a1138031084c0b4fc788bfecf3aa3257 1091 Gene3D G3DSA:3.40.50.10810 249 505 3.6E-28 T 11-10-2018 IPR038718 SNF2-like, N-terminal domain superfamily APJL_0657 a1138031084c0b4fc788bfecf3aa3257 1091 SMART SM00487 247 437 1.2E-10 T 11-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain APJL_0657 a1138031084c0b4fc788bfecf3aa3257 1091 SMART SM00490 729 836 2.0E-9 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0657 a1138031084c0b4fc788bfecf3aa3257 1091 Pfam PF00271 Helicase conserved C-terminal domain 708 836 2.9E-13 T 11-10-2018 IPR001650 Helicase, C-terminal APJL_0657 a1138031084c0b4fc788bfecf3aa3257 1091 Gene3D G3DSA:3.40.50.300 651 870 3.2E-28 T 11-10-2018 APJL_1304 3d7f7136f244155841998a12a61be635 258 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 5 256 1.8E-99 T 11-10-2018 IPR003453 ABC transport permease subunit MlaE, Proteobacteria APJL_1304 3d7f7136f244155841998a12a61be635 258 Pfam PF02405 Permease MlaE 44 254 7.8E-74 T 11-10-2018 IPR030802 ABC transporter permease MalE GO:0043190 APJL_0770 0907526fa9ae88dae263c3c9953923df 120 Pfam PF01219 Prokaryotic diacylglycerol kinase 17 118 6.7E-35 T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 APJL_0770 0907526fa9ae88dae263c3c9953923df 120 ProSitePatterns PS01069 Prokaryotic diacylglycerol kinase signature. 71 82 - T 11-10-2018 IPR000829 DAGK family GO:0008654|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 APJL_0770 0907526fa9ae88dae263c3c9953923df 120 Gene3D G3DSA:1.10.3830.10 4 120 1.0E-37 T 11-10-2018 IPR036945 Diacylglycerol kinase (DAGK) superfamily GO:0008610|GO:0016020|GO:0016301 KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039|MetaCyc: PWY-7817 APJL_1118 4366a7dc940799c57db5b0876beff424 334 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 315 4.1E-103 T 11-10-2018 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 APJL_1118 4366a7dc940799c57db5b0876beff424 334 Pfam PF03739 Predicted permease YjgP/YjgQ family 3 311 1.9E-62 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 APJL_0455 68f60abd951e078c64b27341b838895f 129 SUPERFAMILY SSF55298 1 128 2.2E-43 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APJL_0455 68f60abd951e078c64b27341b838895f 129 Gene3D G3DSA:3.30.1330.40 1 129 4.1E-48 T 11-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 APJL_0455 68f60abd951e078c64b27341b838895f 129 Pfam PF01042 Endoribonuclease L-PSP 8 127 1.1E-43 T 11-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 APJL_0455 68f60abd951e078c64b27341b838895f 129 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 127 2.4E-52 T 11-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 APJL_0455 68f60abd951e078c64b27341b838895f 129 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 104 122 - T 11-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 APJL_1075 4054705d218b673e70a9dc3f93bc6343 272 SUPERFAMILY SSF53098 106 265 8.5E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1075 4054705d218b673e70a9dc3f93bc6343 272 Pfam PF00665 Integrase core domain 111 226 1.8E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_1075 4054705d218b673e70a9dc3f93bc6343 272 Pfam PF13276 HTH-like domain 35 88 2.8E-15 T 11-10-2018 IPR025948 HTH-like domain APJL_1075 4054705d218b673e70a9dc3f93bc6343 272 Gene3D G3DSA:3.30.420.10 107 266 1.5E-9 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0506 0f1396c10561669eca90caff30f36312 111 Gene3D G3DSA:1.20.1290.10 1 111 2.6E-27 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APJL_0506 0f1396c10561669eca90caff30f36312 111 SUPERFAMILY SSF69118 4 108 1.02E-27 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APJL_0506 0f1396c10561669eca90caff30f36312 111 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 41 90 2.0E-18 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APJL_0506 0f1396c10561669eca90caff30f36312 111 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 105 2.1E-20 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APJL_0725 b310ba73b1dd437d6f77f940eda92007 190 Gene3D G3DSA:3.15.10.40 17 188 2.8E-42 T 11-10-2018 APJL_0725 b310ba73b1dd437d6f77f940eda92007 190 Pfam PF07273 Protein of unknown function (DUF1439) 27 181 2.9E-45 T 11-10-2018 IPR010835 Protein of unknown function DUF1439 APJL_1570 9384d6f7cd90cf4a9dc24bd16b0aff23 297 Gene3D G3DSA:1.10.150.130 6 97 7.7E-20 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APJL_1570 9384d6f7cd90cf4a9dc24bd16b0aff23 297 Gene3D G3DSA:1.10.443.10 109 291 6.4E-72 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APJL_1570 9384d6f7cd90cf4a9dc24bd16b0aff23 297 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 4 297 58.476 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 APJL_1570 9384d6f7cd90cf4a9dc24bd16b0aff23 297 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 9 296 1.5E-113 T 11-10-2018 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 APJL_1570 9384d6f7cd90cf4a9dc24bd16b0aff23 297 SUPERFAMILY SSF56349 7 286 2.35E-55 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APJL_1570 9384d6f7cd90cf4a9dc24bd16b0aff23 297 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 297 56.302 T 11-10-2018 IPR023009 Tyrosine recombinase XerC/XerD APJL_1570 9384d6f7cd90cf4a9dc24bd16b0aff23 297 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 88 3.8E-22 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APJL_1570 9384d6f7cd90cf4a9dc24bd16b0aff23 297 Pfam PF00589 Phage integrase family 111 283 1.2E-54 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APJL_0695 670de4966d9a5423d87296dc8afbb400 298 Gene3D G3DSA:3.40.190.290 91 289 5.9E-68 T 11-10-2018 APJL_0695 670de4966d9a5423d87296dc8afbb400 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.3E-16 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0695 670de4966d9a5423d87296dc8afbb400 298 Gene3D G3DSA:1.10.10.10 2 89 1.1E-25 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0695 670de4966d9a5423d87296dc8afbb400 298 Pfam PF03466 LysR substrate binding domain 89 287 1.9E-45 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_0695 670de4966d9a5423d87296dc8afbb400 298 SUPERFAMILY SSF46785 4 87 1.36E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0695 670de4966d9a5423d87296dc8afbb400 298 SUPERFAMILY SSF53850 87 292 1.36E-49 T 11-10-2018 APJL_0957 4967832a288ab3eb3f50672d500de6e6 373 Pfam PF12762 ISXO2-like transposase domain 140 302 6.7E-47 T 11-10-2018 IPR024445 ISXO2-like transposase domain APJL_0957 4967832a288ab3eb3f50672d500de6e6 373 SMART SM01126 140 302 1.4E-43 T 11-10-2018 IPR024445 ISXO2-like transposase domain APJL_0957 4967832a288ab3eb3f50672d500de6e6 373 Pfam PF12760 Transposase zinc-ribbon domain 22 72 1.3E-15 T 11-10-2018 IPR024442 Transposase, zinc-ribbon APJL_0908 1db0513ac81aa38062ff568688765d6b 305 PIRSF PIRSF018296 1 305 5.3E-125 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 APJL_0908 1db0513ac81aa38062ff568688765d6b 305 Pfam PF04216 Protein involved in formate dehydrogenase formation 19 302 1.9E-108 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 APJL_0908 1db0513ac81aa38062ff568688765d6b 305 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 2 302 1.6E-96 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 APJL_0908 1db0513ac81aa38062ff568688765d6b 305 Gene3D G3DSA:3.90.1670.10 22 305 6.3E-85 T 11-10-2018 IPR024064 FdhE-like superfamily APJL_0908 1db0513ac81aa38062ff568688765d6b 305 SUPERFAMILY SSF144020 22 302 6.41E-93 T 11-10-2018 IPR024064 FdhE-like superfamily APJL_0908 1db0513ac81aa38062ff568688765d6b 305 Hamap MF_00611 Protein FdhE [fdhE]. 3 304 44.493 T 11-10-2018 IPR006452 Formate dehydrogenase accessory protein GO:0005737 APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 SUPERFAMILY SSF52821 25 127 1.7E-13 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 SUPERFAMILY SSF52821 298 437 4.06E-30 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 SMART SM00450 150 273 2.8E-9 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 SMART SM00450 26 135 0.0085 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 SMART SM00450 299 427 6.2E-10 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 Gene3D G3DSA:3.40.250.10 289 441 2.7E-39 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 SUPERFAMILY SSF52821 145 285 5.63E-25 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 Gene3D G3DSA:3.40.250.10 143 286 3.9E-33 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 Pfam PF00581 Rhodanese-like domain 28 124 8.1E-9 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 Pfam PF00581 Rhodanese-like domain 186 269 7.0E-11 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 Pfam PF00581 Rhodanese-like domain 308 423 1.9E-11 T 11-10-2018 IPR001763 Rhodanese-like domain APJL_2096 1781ed28f89a8214604a432f6fb1e456 456 Gene3D G3DSA:3.40.250.10 22 132 7.0E-19 T 11-10-2018 IPR036873 Rhodanese-like domain superfamily APJL_1228 cf4ba364899843d861d661ca44805a6e 614 SUPERFAMILY SSF52540 354 604 5.66E-90 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1228 cf4ba364899843d861d661ca44805a6e 614 Gene3D G3DSA:1.20.1560.10 12 347 9.7E-26 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_1228 cf4ba364899843d861d661ca44805a6e 614 SMART SM00382 389 580 7.9E-21 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1228 cf4ba364899843d861d661ca44805a6e 614 ProSitePatterns PS00211 ABC transporters family signature. 506 520 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1228 cf4ba364899843d861d661ca44805a6e 614 SUPERFAMILY SSF90123 32 345 2.62E-48 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_1228 cf4ba364899843d861d661ca44805a6e 614 Pfam PF00664 ABC transporter transmembrane region 43 310 3.7E-12 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APJL_1228 cf4ba364899843d861d661ca44805a6e 614 Pfam PF00005 ABC transporter 380 534 1.3E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1228 cf4ba364899843d861d661ca44805a6e 614 Gene3D G3DSA:3.40.50.300 354 607 8.7E-93 T 11-10-2018 APJL_0162 7af637e7b3f8345a4cf08a6dfcd16961 302 Pfam PF04381 Putative exonuclease, RdgC 2 297 3.0E-115 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 APJL_0162 7af637e7b3f8345a4cf08a6dfcd16961 302 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 2 300 34.256 T 11-10-2018 IPR007476 Putative exonuclease, RdgC GO:0006310 APJL_1842 59ab6d18ea010ce7c35a37ed8e47abe9 129 PIRSF PIRSF016789 1 122 2.3E-34 T 11-10-2018 IPR007401 Protein of unknown function DUF454 APJL_1842 59ab6d18ea010ce7c35a37ed8e47abe9 129 Pfam PF04304 Protein of unknown function (DUF454) 2 115 9.9E-40 T 11-10-2018 IPR007401 Protein of unknown function DUF454 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 Gene3D G3DSA:3.30.70.120 226 299 1.5E-33 T 11-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 156 177 - T 11-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 SUPERFAMILY SSF54913 226 298 1.22E-21 T 11-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 Pfam PF01634 ATP phosphoribosyltransferase 54 219 6.4E-48 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 Pfam PF08029 HisG, C-terminal domain 223 296 2.0E-23 T 11-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 203 297 3.5E-29 T 11-10-2018 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 7 197 1.1E-56 T 11-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 6 299 35.125 T 11-10-2018 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 SUPERFAMILY SSF53850 6 223 1.65E-68 T 11-10-2018 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 Gene3D G3DSA:3.40.190.10 102 191 9.0E-73 T 11-10-2018 APJL_2069 c4272d83d9da44eab2e91cdc042b066e 299 Gene3D G3DSA:3.40.190.10 7 220 9.0E-73 T 11-10-2018 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 Pfam PF00849 RNA pseudouridylate synthase 136 266 3.1E-17 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 Pfam PF01479 S4 domain 71 111 7.6E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 Gene3D G3DSA:3.30.70.580 137 296 5.4E-53 T 11-10-2018 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 174 188 - T 11-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 SUPERFAMILY SSF55120 136 300 6.4E-44 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 Gene3D G3DSA:3.30.70.1560 198 288 5.4E-53 T 11-10-2018 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 140 299 1.3E-62 T 11-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 SMART SM00363 70 134 6.1E-6 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 Gene3D G3DSA:3.10.290.10 66 126 7.7E-20 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APJL_1179 9984e3b5c1608679e6f951e03a5123dc 349 SUPERFAMILY SSF55174 63 178 2.49E-16 T 11-10-2018 APJL_0019 176ebb355030ea99ae8bcb9c339a3b0c 351 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 6 142 6.1E-49 T 11-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0019 176ebb355030ea99ae8bcb9c339a3b0c 351 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 5 350 36.173 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0019 176ebb355030ea99ae8bcb9c339a3b0c 351 Gene3D G3DSA:3.40.50.2000 159 314 1.2E-121 T 11-10-2018 APJL_0019 176ebb355030ea99ae8bcb9c339a3b0c 351 Gene3D G3DSA:3.40.50.2000 6 158 1.2E-121 T 11-10-2018 APJL_0019 176ebb355030ea99ae8bcb9c339a3b0c 351 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 182 341 6.1E-42 T 11-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 APJL_0019 176ebb355030ea99ae8bcb9c339a3b0c 351 SUPERFAMILY SSF53756 3 350 1.15E-128 T 11-10-2018 APJL_0019 176ebb355030ea99ae8bcb9c339a3b0c 351 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 3 346 7.5E-118 T 11-10-2018 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0050511 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 APJL_0838 75f63e7cd5f0a72c3a01c72769c232ad 226 SUPERFAMILY SSF88713 1 187 2.2E-54 T 11-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 APJL_0838 75f63e7cd5f0a72c3a01c72769c232ad 226 Pfam PF04748 Divergent polysaccharide deacetylase 1 186 2.6E-60 T 11-10-2018 IPR006837 Divergent polysaccharide deacetylase APJL_0838 75f63e7cd5f0a72c3a01c72769c232ad 226 Gene3D G3DSA:3.20.20.370 1 187 3.6E-56 T 11-10-2018 APJL_1218 4a2b4b82fa33ec50eca9eef69951e6a7 264 SUPERFAMILY SSF47616 116 255 6.0E-34 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APJL_1218 4a2b4b82fa33ec50eca9eef69951e6a7 264 Pfam PF02798 Glutathione S-transferase, N-terminal domain 46 126 4.9E-7 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APJL_1218 4a2b4b82fa33ec50eca9eef69951e6a7 264 Gene3D G3DSA:3.40.30.10 17 255 2.1E-111 T 11-10-2018 APJL_1218 4a2b4b82fa33ec50eca9eef69951e6a7 264 Pfam PF13410 Glutathione S-transferase, C-terminal domain 182 242 8.6E-10 T 11-10-2018 APJL_1218 4a2b4b82fa33ec50eca9eef69951e6a7 264 Gene3D G3DSA:1.20.1050.10 132 248 2.1E-111 T 11-10-2018 APJL_1218 4a2b4b82fa33ec50eca9eef69951e6a7 264 SUPERFAMILY SSF52833 38 129 1.38E-16 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0081 ae8b2fcf2aed434f892dc9121b388501 135 TIGRFAM TIGR02364 dha_pts: dihydroxyacetone kinase, phosphotransfer subunit 2 126 3.7E-43 T 11-10-2018 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain APJL_0081 ae8b2fcf2aed434f892dc9121b388501 135 Gene3D G3DSA:3.40.50.510 1 131 2.3E-45 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 APJL_0081 ae8b2fcf2aed434f892dc9121b388501 135 SUPERFAMILY SSF53062 1 127 9.42E-35 T 11-10-2018 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily GO:0009401|GO:0016021 APJL_0081 ae8b2fcf2aed434f892dc9121b388501 135 Pfam PF03610 PTS system fructose IIA component 4 119 9.8E-28 T 11-10-2018 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 APJL_1481 5785d8323651e094c887d606302c2eda 251 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 6 151 3.1E-52 T 11-10-2018 IPR023370 YaeB-like, N-terminal domain APJL_1481 5785d8323651e094c887d606302c2eda 251 SUPERFAMILY SSF118196 5 231 2.88E-78 T 11-10-2018 IPR036413 YaeB-like superfamily APJL_1481 5785d8323651e094c887d606302c2eda 251 ProSitePatterns PS01318 TsaA-like domain signature. 89 100 - T 11-10-2018 IPR023368 Uncharacterised protein family UPF0066, conserved site APJL_1481 5785d8323651e094c887d606302c2eda 251 Gene3D G3DSA:2.40.30.70 23 150 6.6E-50 T 11-10-2018 IPR036414 YaeB, N-terminal domain superfamily APJL_1481 5785d8323651e094c887d606302c2eda 251 Gene3D G3DSA:3.30.2310.10 151 237 1.7E-17 T 11-10-2018 APJL_1481 5785d8323651e094c887d606302c2eda 251 Pfam PF01980 Uncharacterised protein family UPF0066 24 145 3.9E-39 T 11-10-2018 IPR023370 YaeB-like, N-terminal domain APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 SUPERFAMILY SSF81336 82 254 5.75E-44 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 ProSitePatterns PS00449 ATP synthase a subunit signature. 189 198 - T 11-10-2018 IPR023011 ATP synthase, F0 complex, subunit A, active site Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 Gene3D G3DSA:1.20.120.220 79 260 1.8E-57 T 11-10-2018 IPR035908 ATP synthase, F0 complex, subunit A superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 Pfam PF00119 ATP synthase A chain 31 254 1.2E-55 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 Hamap MF_01393 ATP synthase subunit a [atpB]. 9 260 15.189 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 22 256 3.5E-51 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 PRINTS PR00123 ATP synthase A subunit signature 240 255 8.8E-13 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 PRINTS PR00123 ATP synthase A subunit signature 88 104 8.8E-13 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1685 d89006317d7b99a44d51a99f07cbdf6d 262 PRINTS PR00123 ATP synthase A subunit signature 186 208 8.8E-13 T 11-10-2018 IPR000568 ATP synthase, F0 complex, subunit A GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_0926 b20668f7c8147d72615fec61e0e07a38 169 Gene3D G3DSA:2.40.100.10 1 169 6.6E-67 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APJL_0926 b20668f7c8147d72615fec61e0e07a38 169 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 11-10-2018 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 APJL_0926 b20668f7c8147d72615fec61e0e07a38 169 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 167 2.9E-50 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 APJL_0926 b20668f7c8147d72615fec61e0e07a38 169 SUPERFAMILY SSF50891 2 168 1.27E-59 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APJL_0926 b20668f7c8147d72615fec61e0e07a38 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 8.2E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 APJL_0926 b20668f7c8147d72615fec61e0e07a38 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 8.2E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 APJL_0926 b20668f7c8147d72615fec61e0e07a38 169 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 139 8.2E-12 T 11-10-2018 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755 APJL_0926 b20668f7c8147d72615fec61e0e07a38 169 PIRSF PIRSF001467 1 168 2.3E-28 T 11-10-2018 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755 APJL_0298 732e702da509a7b1b208111daa9f1458 537 SUPERFAMILY SSF53335 29 534 4.3E-125 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0298 732e702da509a7b1b208111daa9f1458 537 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 315 327 5.2E-22 T 11-10-2018 APJL_0298 732e702da509a7b1b208111daa9f1458 537 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 242 256 5.2E-22 T 11-10-2018 APJL_0298 732e702da509a7b1b208111daa9f1458 537 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 216 232 5.2E-22 T 11-10-2018 APJL_0298 732e702da509a7b1b208111daa9f1458 537 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 353 377 5.2E-22 T 11-10-2018 APJL_0298 732e702da509a7b1b208111daa9f1458 537 Pfam PF02384 N-6 DNA Methylase 192 500 1.5E-112 T 11-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 APJL_0298 732e702da509a7b1b208111daa9f1458 537 TIGRFAM TIGR00497 hsdM: type I restriction-modification system, M subunit 26 522 3.1E-201 T 11-10-2018 IPR004546 Restriction endonuclease, type I, HsdM GO:0003677|GO:0009007|GO:0009307 APJL_0298 732e702da509a7b1b208111daa9f1458 537 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 318 324 - T 11-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 APJL_0298 732e702da509a7b1b208111daa9f1458 537 Gene3D G3DSA:1.20.1260.30 21 210 2.9E-52 T 11-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily APJL_0298 732e702da509a7b1b208111daa9f1458 537 Gene3D G3DSA:3.40.50.150 214 494 9.8E-81 T 11-10-2018 APJL_0298 732e702da509a7b1b208111daa9f1458 537 Pfam PF12161 HsdM N-terminal domain 30 178 1.3E-15 T 11-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain APJL_1703 952ea02d1ffef6383fb6f327939d9d20 290 Gene3D G3DSA:3.40.50.2300 123 257 1.1E-97 T 11-10-2018 APJL_1703 952ea02d1ffef6383fb6f327939d9d20 290 SUPERFAMILY SSF53822 23 288 1.8E-83 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_1703 952ea02d1ffef6383fb6f327939d9d20 290 Gene3D G3DSA:3.40.50.2300 29 276 1.1E-97 T 11-10-2018 APJL_1703 952ea02d1ffef6383fb6f327939d9d20 290 Pfam PF13407 Periplasmic binding protein domain 26 276 1.1E-60 T 11-10-2018 IPR025997 Periplasmic binding protein APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 Gene3D G3DSA:3.50.50.60 117 243 8.1E-129 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 299 1.3E-52 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 1.0E-39 T 11-10-2018 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 147 165 1.0E-39 T 11-10-2018 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 1.0E-39 T 11-10-2018 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 105 123 1.0E-39 T 11-10-2018 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 1.0E-39 T 11-10-2018 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 Gene3D G3DSA:3.50.50.60 9 311 8.1E-129 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 SUPERFAMILY SSF51905 2 312 2.11E-53 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 7 312 6.0E-123 T 11-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 40 55 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 61 71 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 128 140 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 237 258 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 7 29 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 106 114 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 275 293 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 198 214 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 143 167 8.6E-75 T 11-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 APJL_0084 c667e0d1648ea6d0e282e366597151c6 317 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 135 155 - T 11-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 APJL_1342 ce53fe7420182f8942e326a9a58bed6f 371 Pfam PF01924 Hydrogenase formation hypA family 20 368 3.9E-154 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 APJL_1342 ce53fe7420182f8942e326a9a58bed6f 371 Gene3D G3DSA:3.40.50.11740 67 305 9.6E-115 T 11-10-2018 APJL_1342 ce53fe7420182f8942e326a9a58bed6f 371 Gene3D G3DSA:3.40.50.11750 32 264 9.6E-115 T 11-10-2018 APJL_1342 ce53fe7420182f8942e326a9a58bed6f 371 PIRSF PIRSF005622 1 371 1.1E-157 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 APJL_1342 ce53fe7420182f8942e326a9a58bed6f 371 Gene3D G3DSA:1.10.10.2140 320 369 3.9E-22 T 11-10-2018 APJL_1342 ce53fe7420182f8942e326a9a58bed6f 371 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 3 370 2.3E-158 T 11-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 APJL_0872 be10a77663b436dfd45fdee806a8b128 103 Pfam PF04287 tRNA pseudouridine synthase C 4 94 2.4E-31 T 11-10-2018 IPR023376 YqcC-like domain APJL_0872 be10a77663b436dfd45fdee806a8b128 103 Gene3D G3DSA:1.20.1440.40 1 101 2.3E-29 T 11-10-2018 IPR036814 YqcC-like superfamily APJL_0872 be10a77663b436dfd45fdee806a8b128 103 SUPERFAMILY SSF158452 2 102 4.05E-34 T 11-10-2018 IPR036814 YqcC-like superfamily APJL_0872 be10a77663b436dfd45fdee806a8b128 103 PIRSF PIRSF006257 1 103 1.9E-33 T 11-10-2018 IPR007384 Protein of unknown function UCP006257 APJL_0072 260c7d304a6b2585146e36c1d8ef2574 345 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 31 344 1.6E-144 T 11-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 APJL_0072 260c7d304a6b2585146e36c1d8ef2574 345 ProSitePatterns PS00770 Aminotransferases class-IV signature. 225 254 - T 11-10-2018 IPR018300 Aminotransferase, class IV, conserved site GO:0003824 Reactome: R-HSA-70895 APJL_0072 260c7d304a6b2585146e36c1d8ef2574 345 Pfam PF01063 Amino-transferase class IV 56 298 3.8E-37 T 11-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 APJL_0072 260c7d304a6b2585146e36c1d8ef2574 345 Gene3D G3DSA:3.20.10.10 166 345 8.6E-54 T 11-10-2018 APJL_0072 260c7d304a6b2585146e36c1d8ef2574 345 SUPERFAMILY SSF56752 4 341 1.57E-98 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 APJL_0072 260c7d304a6b2585146e36c1d8ef2574 345 PIRSF PIRSF006468 1 345 1.1E-119 T 11-10-2018 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|MetaCyc: PWY-7767|Reactome: R-HSA-70895 APJL_0072 260c7d304a6b2585146e36c1d8ef2574 345 Gene3D G3DSA:3.30.470.10 1 165 9.4E-58 T 11-10-2018 APJL_0422 ad30f6d11ba74244597a265c9aa8727b 179 Pfam PF00156 Phosphoribosyl transferase domain 9 158 2.2E-20 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APJL_0422 ad30f6d11ba74244597a265c9aa8727b 179 SUPERFAMILY SSF53271 2 171 9.83E-42 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_0422 ad30f6d11ba74244597a265c9aa8727b 179 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 2 175 34.616 T 11-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APJL_0422 ad30f6d11ba74244597a265c9aa8727b 179 Gene3D G3DSA:3.40.50.2020 1 179 2.2E-57 T 11-10-2018 APJL_1256 18c60cca3eeb27a09a43401069af764a 172 Pfam PF03350 Uncharacterized protein family, UPF0114 13 129 2.8E-39 T 11-10-2018 IPR005134 Uncharacterised protein family UPF0114 APJL_1256 18c60cca3eeb27a09a43401069af764a 172 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 172 89.362 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria APJL_1256 18c60cca3eeb27a09a43401069af764a 172 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 7 171 5.5E-69 T 11-10-2018 IPR020761 Uncharacterised protein family UPF0114, bacteria APJL_1970 7114ac14ab7c7d643a6fdab7625d43ba 393 SUPERFAMILY SSF53448 38 303 1.41E-58 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1970 7114ac14ab7c7d643a6fdab7625d43ba 393 TIGRFAM TIGR03937 PgaC_IcaA: poly-beta-1,6 N-acetyl-D-glucosamine synthase 7 392 3.6E-167 T 11-10-2018 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA GO:0008375|GO:0043708 APJL_1970 7114ac14ab7c7d643a6fdab7625d43ba 393 Gene3D G3DSA:3.90.550.10 33 262 8.3E-52 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1970 7114ac14ab7c7d643a6fdab7625d43ba 393 Pfam PF00535 Glycosyl transferase family 2 53 216 1.6E-34 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APJL_0588 13d31994dabb2f3a8a224d67abe6b60b 208 Pfam PF01728 FtsJ-like methyltransferase 30 206 2.3E-56 T 11-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 APJL_0588 13d31994dabb2f3a8a224d67abe6b60b 208 PIRSF PIRSF005461 1 208 4.8E-82 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 APJL_0588 13d31994dabb2f3a8a224d67abe6b60b 208 TIGRFAM TIGR00438 rrmJ: ribosomal RNA large subunit methyltransferase J 19 206 4.6E-95 T 11-10-2018 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria GO:0006364|GO:0016436 APJL_0588 13d31994dabb2f3a8a224d67abe6b60b 208 SUPERFAMILY SSF53335 30 208 2.76E-43 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0588 13d31994dabb2f3a8a224d67abe6b60b 208 Gene3D G3DSA:3.40.50.150 30 208 7.8E-60 T 11-10-2018 APJL_0588 13d31994dabb2f3a8a224d67abe6b60b 208 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 14 207 27.605 T 11-10-2018 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 APJL_1188 0aeb9eef5a4c063fdd4a36d7638c7f02 71 Gene3D G3DSA:1.20.58.660 1 71 5.1E-27 T 11-10-2018 APJL_1188 0aeb9eef5a4c063fdd4a36d7638c7f02 71 Pfam PF04325 Protein of unknown function (DUF465) 19 66 4.3E-17 T 11-10-2018 IPR007420 Protein of unknown function DUF465 APJL_0732 91f6aee1c6cad846285a659cc5016b8d 176 PIRSF PIRSF016183 3 176 3.4E-70 T 11-10-2018 IPR006839 Ribosome-associated, YjgA APJL_0732 91f6aee1c6cad846285a659cc5016b8d 176 Gene3D G3DSA:1.10.60.30 32 105 1.9E-23 T 11-10-2018 APJL_0732 91f6aee1c6cad846285a659cc5016b8d 176 Pfam PF04751 Protein of unknown function (DUF615) 21 171 3.1E-56 T 11-10-2018 IPR006839 Ribosome-associated, YjgA APJL_0732 91f6aee1c6cad846285a659cc5016b8d 176 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 11 175 23.472 T 11-10-2018 IPR006839 Ribosome-associated, YjgA APJL_0732 91f6aee1c6cad846285a659cc5016b8d 176 Gene3D G3DSA:1.10.60.30 106 176 1.1E-24 T 11-10-2018 APJL_0732 91f6aee1c6cad846285a659cc5016b8d 176 SUPERFAMILY SSF158710 32 173 1.23E-49 T 11-10-2018 IPR023153 PSPTO4464-like domain superfamily APJL_0417 81f4e671f225163d52540711bd58f1d1 141 PIRSF PIRSF004923 1 141 7.9E-42 T 11-10-2018 IPR026268 Protein RseC APJL_0417 81f4e671f225163d52540711bd58f1d1 141 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 7 139 2.2E-32 T 11-10-2018 APJL_0720 64e8daea6bc9c12882a6eead6a931053 201 PIRSF PIRSF006158 1 201 3.6E-58 T 11-10-2018 IPR016476 SH3 domain protein APJL_0720 64e8daea6bc9c12882a6eead6a931053 201 Gene3D G3DSA:2.30.30.40 27 81 1.9E-7 T 11-10-2018 APJL_0720 64e8daea6bc9c12882a6eead6a931053 201 SMART SM00287 21 85 3.4E-8 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type APJL_0720 64e8daea6bc9c12882a6eead6a931053 201 Pfam PF08239 Bacterial SH3 domain 32 81 2.3E-9 T 11-10-2018 IPR003646 SH3-like domain, bacterial-type APJL_0720 64e8daea6bc9c12882a6eead6a931053 201 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 25 200 2.4E-48 T 11-10-2018 IPR016476 SH3 domain protein APJL_1675 54c5b8f46d25c8da4c724dbbe3e5c89b 125 SUPERFAMILY SSF75169 1 125 6.67E-34 T 11-10-2018 IPR027396 DsrEFH-like APJL_1675 54c5b8f46d25c8da4c724dbbe3e5c89b 125 Pfam PF02635 DsrE/DsrF-like family 1 125 7.1E-27 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein APJL_1675 54c5b8f46d25c8da4c724dbbe3e5c89b 125 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 3 125 9.1E-49 T 11-10-2018 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 APJL_1675 54c5b8f46d25c8da4c724dbbe3e5c89b 125 Gene3D G3DSA:3.40.1260.10 1 125 2.5E-45 T 11-10-2018 IPR027396 DsrEFH-like APJL_0473 4efe22951e1dd655cc729d82f4b8c1bd 241 Pfam PF02754 Cysteine-rich domain 135 218 8.9E-13 T 11-10-2018 IPR004017 Cysteine-rich domain APJL_0473 4efe22951e1dd655cc729d82f4b8c1bd 241 Pfam PF02754 Cysteine-rich domain 3 84 4.9E-12 T 11-10-2018 IPR004017 Cysteine-rich domain APJL_0173 e8229dd6bf7d05de598a05081a11242e 318 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 11 316 1.9E-132 T 11-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 APJL_0173 e8229dd6bf7d05de598a05081a11242e 318 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 14 308 6.0E-93 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APJL_0173 e8229dd6bf7d05de598a05081a11242e 318 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 5 313 50.338 T 11-10-2018 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243 APJL_0173 e8229dd6bf7d05de598a05081a11242e 318 PIRSF PIRSF026649 11 316 6.7E-89 T 11-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 APJL_0412 92ab9a6dab1dd0cdd5d46e08749f3952 393 Gene3D G3DSA:2.40.420.20 42 372 2.7E-97 T 11-10-2018 APJL_0412 92ab9a6dab1dd0cdd5d46e08749f3952 393 Gene3D G3DSA:2.40.30.170 47 314 2.7E-97 T 11-10-2018 APJL_0412 92ab9a6dab1dd0cdd5d46e08749f3952 393 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 265 8.2E-21 T 11-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain APJL_0412 92ab9a6dab1dd0cdd5d46e08749f3952 393 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 39 374 4.6E-56 T 11-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 APJL_0412 92ab9a6dab1dd0cdd5d46e08749f3952 393 Gene3D G3DSA:2.40.50.100 58 220 2.7E-97 T 11-10-2018 APJL_0412 92ab9a6dab1dd0cdd5d46e08749f3952 393 SUPERFAMILY SSF111369 50 263 1.28E-26 T 11-10-2018 APJL_0412 92ab9a6dab1dd0cdd5d46e08749f3952 393 Gene3D G3DSA:1.10.287.470 92 183 2.7E-97 T 11-10-2018 APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 Gene3D G3DSA:3.40.50.300 13 230 4.6E-67 T 11-10-2018 APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 Gene3D G3DSA:2.40.50.940 231 288 4.6E-6 T 11-10-2018 APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 Pfam PF00005 ABC transporter 29 170 7.5E-35 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 Pfam PF08402 TOBE domain 282 335 2.1E-5 T 11-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 SMART SM00382 37 220 2.2E-17 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 SUPERFAMILY SSF52540 13 249 1.3E-82 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 Gene3D G3DSA:2.40.50.140 289 327 4.6E-6 T 11-10-2018 APJL_1418 cbfd5950de48b2faeccc814cee255bbe 355 SUPERFAMILY SSF50331 248 353 6.24E-14 T 11-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal APJL_1086 a85c922539e50cd91c07a1292d289a4a 165 Pfam PF00210 Ferritin-like domain 7 143 4.7E-41 T 11-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 APJL_1086 a85c922539e50cd91c07a1292d289a4a 165 SUPERFAMILY SSF47240 1 159 6.34E-56 T 11-10-2018 IPR009078 Ferritin-like superfamily APJL_1086 a85c922539e50cd91c07a1292d289a4a 165 Gene3D G3DSA:1.20.1260.10 1 164 1.6E-48 T 11-10-2018 IPR012347 Ferritin-like APJL_1710 322c745f9036d92a40b97b31026339d7 209 Pfam PF13578 Methyltransferase domain 35 160 1.2E-14 T 11-10-2018 APJL_1710 322c745f9036d92a40b97b31026339d7 209 Gene3D G3DSA:3.40.50.150 5 198 1.5E-21 T 11-10-2018 APJL_1710 322c745f9036d92a40b97b31026339d7 209 SUPERFAMILY SSF53335 13 188 1.09E-19 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1299 76947c09d32d223de64a525ff447d25c 424 SUPERFAMILY SSF55205 1 419 1.32E-144 T 11-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 APJL_1299 76947c09d32d223de64a525ff447d25c 424 Gene3D G3DSA:3.65.10.10 11 415 6.3E-169 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APJL_1299 76947c09d32d223de64a525ff447d25c 424 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 418 43.492 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_1299 76947c09d32d223de64a525ff447d25c 424 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 417 8.4E-184 T 11-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 APJL_1299 76947c09d32d223de64a525ff447d25c 424 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 9 408 8.3E-123 T 11-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 APJL_1299 76947c09d32d223de64a525ff447d25c 424 Gene3D G3DSA:3.65.10.10 21 230 6.3E-169 T 11-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 SMART SM00382 494 680 1.4E-20 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 ProSitePatterns PS00211 ABC transporters family signature. 606 620 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 Pfam PF03412 Peptidase C39 family 5 129 3.9E-23 T 11-10-2018 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 SUPERFAMILY SSF52540 459 705 7.73E-91 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 Gene3D G3DSA:3.40.50.300 463 707 5.6E-94 T 11-10-2018 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 SUPERFAMILY SSF90123 142 453 1.44E-66 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 TIGRFAM TIGR01846 type_I_sec_HlyB: type I secretion system ATPase 10 706 0.0 T 11-10-2018 IPR010132 ATPase, type I secretion system, HlyB GO:0005524|GO:0008565|GO:0016021|GO:0030253|GO:0030256 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 Gene3D G3DSA:3.90.70.10 7 137 2.7E-30 T 11-10-2018 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 Gene3D G3DSA:1.20.1560.10 141 455 9.5E-74 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 Pfam PF00664 ABC transporter transmembrane region 157 424 1.9E-59 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APJL_1345 69f7c9e49fe284f13b10ec8e2112df56 707 Pfam PF00005 ABC transporter 485 634 4.7E-37 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0606 a16a652f5986a0debf26d67d8d74a494 115 SUPERFAMILY SSF53098 1 108 2.12E-21 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0606 a16a652f5986a0debf26d67d8d74a494 115 Pfam PF13333 Integrase core domain 59 114 9.4E-25 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_0606 a16a652f5986a0debf26d67d8d74a494 115 Gene3D G3DSA:3.30.420.10 1 114 4.9E-7 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_0562 5230f1c32f055091ffb24404cc44bd4a 237 Hamap MF_01220_B Uridylate kinase [pyrH]. 4 237 42.397 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 APJL_0562 5230f1c32f055091ffb24404cc44bd4a 237 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 6 237 2.3E-103 T 11-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 APJL_0562 5230f1c32f055091ffb24404cc44bd4a 237 PIRSF PIRSF005650 1 237 1.2E-87 T 11-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 APJL_0562 5230f1c32f055091ffb24404cc44bd4a 237 Pfam PF00696 Amino acid kinase family 7 216 8.7E-27 T 11-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 APJL_0562 5230f1c32f055091ffb24404cc44bd4a 237 Gene3D G3DSA:3.40.1160.10 1 237 5.4E-74 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_0562 5230f1c32f055091ffb24404cc44bd4a 237 SUPERFAMILY SSF53633 4 236 1.83E-70 T 11-10-2018 IPR036393 Acetylglutamate kinase-like superfamily APJL_1978 0775a0270d59ba8665df0f97cdd30c81 398 Pfam PF01551 Peptidase family M23 298 391 7.3E-31 T 11-10-2018 IPR016047 Peptidase M23 APJL_1978 0775a0270d59ba8665df0f97cdd30c81 398 SMART SM00257 124 168 8.6E-11 T 11-10-2018 IPR018392 LysM domain APJL_1978 0775a0270d59ba8665df0f97cdd30c81 398 SUPERFAMILY SSF51261 124 395 9.42E-52 T 11-10-2018 IPR011055 Duplicated hybrid motif APJL_1978 0775a0270d59ba8665df0f97cdd30c81 398 Gene3D G3DSA:3.10.350.10 119 181 1.8E-11 T 11-10-2018 IPR036779 LysM domain superfamily APJL_1978 0775a0270d59ba8665df0f97cdd30c81 398 Gene3D G3DSA:2.70.70.10 261 396 8.4E-38 T 11-10-2018 IPR011055 Duplicated hybrid motif APJL_1978 0775a0270d59ba8665df0f97cdd30c81 398 Pfam PF01476 LysM domain 125 166 8.5E-10 T 11-10-2018 IPR018392 LysM domain APJL_1176 15927dfa7ab80cb2f889cc8a685dd913 440 Pfam PF00939 Sodium:sulfate symporter transmembrane region 1 440 7.1E-121 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APJL_1176 15927dfa7ab80cb2f889cc8a685dd913 440 PIRSF PIRSF002457 1 440 3.3E-124 T 11-10-2018 IPR030676 Citrate carrier CitT-related APJL_1176 15927dfa7ab80cb2f889cc8a685dd913 440 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 1 434 5.0E-105 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APJL_0917 c251cdd142460a79446b741762d074cb 112 Gene3D G3DSA:2.40.100.20 1 109 2.4E-12 T 11-10-2018 APJL_0917 c251cdd142460a79446b741762d074cb 112 SUPERFAMILY SSF50891 1 111 2.5E-20 T 11-10-2018 IPR029000 Cyclophilin-like domain superfamily APJL_0917 c251cdd142460a79446b741762d074cb 112 Pfam PF04126 Cyclophilin-like 2 79 7.6E-8 T 11-10-2018 IPR025658 Cyclophilin TM1367-like domain APJL_1557 165ac3c62a5499e2cf047a3fb309a4b6 327 Pfam PF00152 tRNA synthetases class II (D, K and N) 15 323 1.9E-45 T 11-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 APJL_1557 165ac3c62a5499e2cf047a3fb309a4b6 327 SUPERFAMILY SSF55681 16 322 7.17E-81 T 11-10-2018 APJL_1557 165ac3c62a5499e2cf047a3fb309a4b6 327 Gene3D G3DSA:3.30.930.10 5 327 1.5E-110 T 11-10-2018 APJL_1557 165ac3c62a5499e2cf047a3fb309a4b6 327 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 6 327 53.189 T 11-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 APJL_1557 165ac3c62a5499e2cf047a3fb309a4b6 327 PRINTS PR00982 Lysyl-tRNA synthetase signature 35 45 1.7E-6 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_1557 165ac3c62a5499e2cf047a3fb309a4b6 327 PRINTS PR00982 Lysyl-tRNA synthetase signature 103 120 1.7E-6 T 11-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 APJL_1557 165ac3c62a5499e2cf047a3fb309a4b6 327 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 21 322 3.1E-130 T 11-10-2018 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 APJL_2092 2478d689096a7ef53fedcc8e22b8707a 288 Pfam PF13369 Transglutaminase-like superfamily 49 200 8.8E-38 T 11-10-2018 IPR032698 Protein SirB1, N-terminal Reactome: R-HSA-8951664|Reactome: R-HSA-983168 APJL_2092 2478d689096a7ef53fedcc8e22b8707a 288 Pfam PF13371 Tetratricopeptide repeat 205 272 9.7E-21 T 11-10-2018 APJL_0024 cb841004b232b049203f31720497be4b 392 ProSitePatterns PS01135 FtsZ protein signature 2. 102 123 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 APJL_0024 cb841004b232b049203f31720497be4b 392 SUPERFAMILY SSF55307 209 324 7.55E-38 T 11-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 Gene3D G3DSA:3.40.50.1440 10 322 2.6E-114 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 PRINTS PR00423 Cell division protein FtsZ signature 194 216 7.0E-51 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 PRINTS PR00423 Cell division protein FtsZ signature 103 123 7.0E-51 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 PRINTS PR00423 Cell division protein FtsZ signature 131 152 7.0E-51 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 PRINTS PR00423 Cell division protein FtsZ signature 217 238 7.0E-51 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 8 333 9.0E-131 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 APJL_0024 cb841004b232b049203f31720497be4b 392 ProSitePatterns PS01134 FtsZ protein signature 1. 49 83 - T 11-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 APJL_0024 cb841004b232b049203f31720497be4b 392 SMART SM00865 212 330 3.1E-46 T 11-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 334 36.602 T 11-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 APJL_0024 cb841004b232b049203f31720497be4b 392 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 178 1.9E-40 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 Pfam PF12327 FtsZ family, C-terminal domain 227 321 2.4E-31 T 11-10-2018 IPR024757 Cell division protein FtsZ, C-terminal APJL_0024 cb841004b232b049203f31720497be4b 392 SUPERFAMILY SSF52490 13 213 2.88E-67 T 11-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 APJL_0024 cb841004b232b049203f31720497be4b 392 SMART SM00864 13 210 4.0E-108 T 11-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 APJL_0983 622072a9413447150616871afb0dac5a 155 Pfam PF10675 Protein of unknown function (DUF2489) 14 144 3.9E-45 T 11-10-2018 IPR019617 Domain of unknown function DUF2489 APJL_1543 7e04168c54b2672a5747180ec144cd69 194 SUPERFAMILY SSF53218 7 191 1.57E-46 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily APJL_1543 7e04168c54b2672a5747180ec144cd69 194 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 11-10-2018 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 APJL_1543 7e04168c54b2672a5747180ec144cd69 194 SMART SM00852 10 156 3.1E-19 T 11-10-2018 IPR001453 MoaB/Mog domain APJL_1543 7e04168c54b2672a5747180ec144cd69 194 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 7 149 1.1E-39 T 11-10-2018 IPR001453 MoaB/Mog domain APJL_1543 7e04168c54b2672a5747180ec144cd69 194 Gene3D G3DSA:3.40.980.10 4 194 1.6E-60 T 11-10-2018 IPR036425 MoaB/Mog-like domain superfamily APJL_1543 7e04168c54b2672a5747180ec144cd69 194 Pfam PF00994 Probable molybdopterin binding domain 11 150 1.0E-26 T 11-10-2018 IPR001453 MoaB/Mog domain APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 Gene3D G3DSA:2.60.40.420 19 143 1.9E-32 T 11-10-2018 IPR008972 Cupredoxin APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 PRINTS PR00155 Amicyanin family signature 75 90 1.0E-21 T 11-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 PRINTS PR00155 Amicyanin family signature 36 55 1.0E-21 T 11-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 PRINTS PR00155 Amicyanin family signature 20 35 1.0E-21 T 11-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 PRINTS PR00155 Amicyanin family signature 91 106 1.0E-21 T 11-10-2018 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 TIGRFAM TIGR02375 pseudoazurin: pseudoazurin 25 137 1.0E-34 T 11-10-2018 IPR012745 Pseudoazurin GO:0005507 APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 SUPERFAMILY SSF49503 20 124 2.99E-27 T 11-10-2018 IPR008972 Cupredoxin APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 88 102 - T 11-10-2018 IPR028871 Blue (type 1) copper protein, binding site APJL_1830 0cccbe36ab7c0337e60a1314b445a5fa 143 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 25 108 4.0E-12 T 11-10-2018 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 Gene3D G3DSA:1.10.3860.10 6 403 1.4E-72 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 PRINTS PR00173 Glutamate-aspartate symporter signature 220 239 1.2E-15 T 11-10-2018 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 PRINTS PR00173 Glutamate-aspartate symporter signature 322 341 1.2E-15 T 11-10-2018 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 PRINTS PR00173 Glutamate-aspartate symporter signature 185 204 1.2E-15 T 11-10-2018 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 PRINTS PR00173 Glutamate-aspartate symporter signature 349 369 1.2E-15 T 11-10-2018 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 PRINTS PR00173 Glutamate-aspartate symporter signature 287 313 1.2E-15 T 11-10-2018 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 PRINTS PR00173 Glutamate-aspartate symporter signature 9 29 1.2E-15 T 11-10-2018 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 Pfam PF00375 Sodium:dicarboxylate symporter family 15 398 8.5E-67 T 11-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 3 404 35.266 T 11-10-2018 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 APJL_0769 bf8c95ed82740560f3439467bc3feaed 404 SUPERFAMILY SSF118215 15 398 6.67E-94 T 11-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 APJL_0734 eac72eb06c0375aef1aa6a8cd417228b 149 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 5 142 1.6E-52 T 11-10-2018 IPR004507 Flavin prenyltransferase UbiX-like APJL_0734 eac72eb06c0375aef1aa6a8cd417228b 149 Pfam PF02441 Flavoprotein 37 124 3.9E-14 T 11-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 APJL_0734 eac72eb06c0375aef1aa6a8cd417228b 149 SUPERFAMILY SSF52507 4 142 1.11E-43 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 APJL_0734 eac72eb06c0375aef1aa6a8cd417228b 149 Gene3D G3DSA:3.40.50.1950 1 149 1.1E-55 T 11-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 APJL_0708 0002368823029c03f7d35b6882c5ebbd 111 Pfam PF04363 Protein of unknown function (DUF496) 9 99 7.7E-43 T 11-10-2018 IPR007458 Protein of unknown function DUF496 APJL_0708 0002368823029c03f7d35b6882c5ebbd 111 PIRSF PIRSF028773 1 111 1.4E-49 T 11-10-2018 IPR007458 Protein of unknown function DUF496 APJL_0708 0002368823029c03f7d35b6882c5ebbd 111 Hamap MF_00683 UPF0265 protein YeeX [yeeX]. 9 103 24.604 T 11-10-2018 IPR007458 Protein of unknown function DUF496 APJL_0708 0002368823029c03f7d35b6882c5ebbd 111 ProDom PD030876 UPF0265 YEEX HELIX ALPHA BFL460 UNCHARACTERIZED FN0411 HI1168 VPA1226 BCR 11 104 5.0E-43 T 11-10-2018 IPR007458 Protein of unknown function DUF496 APJL_0209 33468ede54779f4c46274d0a13c6de2a 272 Pfam PF00665 Integrase core domain 111 226 1.5E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_0209 33468ede54779f4c46274d0a13c6de2a 272 SUPERFAMILY SSF53098 106 265 7.89E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0209 33468ede54779f4c46274d0a13c6de2a 272 Pfam PF13276 HTH-like domain 35 88 3.9E-16 T 11-10-2018 IPR025948 HTH-like domain APJL_0209 33468ede54779f4c46274d0a13c6de2a 272 Gene3D G3DSA:3.30.420.10 107 267 8.4E-10 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1526 33468ede54779f4c46274d0a13c6de2a 272 Pfam PF00665 Integrase core domain 111 226 1.5E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_1526 33468ede54779f4c46274d0a13c6de2a 272 SUPERFAMILY SSF53098 106 265 7.89E-35 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_1526 33468ede54779f4c46274d0a13c6de2a 272 Pfam PF13276 HTH-like domain 35 88 3.9E-16 T 11-10-2018 IPR025948 HTH-like domain APJL_1526 33468ede54779f4c46274d0a13c6de2a 272 Gene3D G3DSA:3.30.420.10 107 267 8.4E-10 T 11-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 APJL_1855 acda5b968bf170bd7514efbed9c4ac08 101 Hamap MF_01217 Acyl carrier protein [acpP]. 26 100 22.709 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 APJL_1855 acda5b968bf170bd7514efbed9c4ac08 101 Gene3D G3DSA:1.10.1200.10 14 101 2.5E-31 T 11-10-2018 IPR036736 ACP-like superfamily APJL_1855 acda5b968bf170bd7514efbed9c4ac08 101 SMART SM00823 Phosphopantetheine attachment site 28 86 0.0092 T 11-10-2018 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 Reactome: R-HSA-163765|Reactome: R-HSA-199220|Reactome: R-HSA-2426168|Reactome: R-HSA-75105 APJL_1855 acda5b968bf170bd7514efbed9c4ac08 101 Pfam PF00550 Phosphopantetheine attachment site 29 96 4.8E-17 T 11-10-2018 IPR009081 Phosphopantetheine binding ACP domain APJL_1855 acda5b968bf170bd7514efbed9c4ac08 101 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 25 98 1.5E-36 T 11-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 APJL_1855 acda5b968bf170bd7514efbed9c4ac08 101 ProSitePatterns PS00012 Phosphopantetheine attachment site. 55 70 - T 11-10-2018 IPR006162 Phosphopantetheine attachment site APJL_1855 acda5b968bf170bd7514efbed9c4ac08 101 SUPERFAMILY SSF47336 24 98 2.49E-24 T 11-10-2018 IPR036736 ACP-like superfamily APJL_0129 065bb0a92b28e099a1e1b01623259812 284 SUPERFAMILY SSF81345 5 261 9.02E-38 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_0129 065bb0a92b28e099a1e1b01623259812 284 Gene3D G3DSA:1.10.3470.10 22 267 1.1E-6 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_0129 065bb0a92b28e099a1e1b01623259812 284 Pfam PF00950 ABC 3 transport family 10 265 4.1E-88 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 PRINTS PR00481 Cytosol aminopeptidase signature 373 388 1.1E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 PRINTS PR00481 Cytosol aminopeptidase signature 264 281 1.1E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 PRINTS PR00481 Cytosol aminopeptidase signature 345 365 1.1E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 PRINTS PR00481 Cytosol aminopeptidase signature 286 307 1.1E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 PRINTS PR00481 Cytosol aminopeptidase signature 323 344 1.1E-55 T 11-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 3.7E-35 T 11-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 Gene3D G3DSA:3.40.220.10 1 159 6.1E-56 T 11-10-2018 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 497 40.375 T 11-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 SUPERFAMILY SSF52949 1 184 2.12E-51 T 11-10-2018 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 186 488 1.6E-120 T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 349 356 - T 11-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 Gene3D G3DSA:3.40.630.10 181 497 4.9E-134 T 11-10-2018 APJL_1116 a29b63bc33c27af41a66055a72c0b9e3 499 SUPERFAMILY SSF53187 180 495 3.14E-122 T 11-10-2018 APJL_1888 55cb686869b1f7c750b71a97e153aaeb 270 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 73 268 6.3E-30 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1888 55cb686869b1f7c750b71a97e153aaeb 270 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 7 265 2.4E-109 T 11-10-2018 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 APJL_1888 55cb686869b1f7c750b71a97e153aaeb 270 SUPERFAMILY SSF161098 13 261 7.98E-55 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1888 55cb686869b1f7c750b71a97e153aaeb 270 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 3 261 2.4E-87 T 11-10-2018 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 APJL_1888 55cb686869b1f7c750b71a97e153aaeb 270 Gene3D G3DSA:1.10.3720.10 11 267 3.8E-63 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0699 7e6fa7442f80b65e8cebd84f4927c2de 422 SUPERFAMILY SSF53383 1 419 1.53E-113 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0699 7e6fa7442f80b65e8cebd84f4927c2de 422 Gene3D G3DSA:3.40.640.10 1 283 4.1E-96 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0699 7e6fa7442f80b65e8cebd84f4927c2de 422 PIRSF PIRSF001434 1 422 5.8E-125 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APJL_0699 7e6fa7442f80b65e8cebd84f4927c2de 422 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 419 7.7E-128 T 11-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 APJL_0699 7e6fa7442f80b65e8cebd84f4927c2de 422 Gene3D G3DSA:3.90.1150.10 287 422 2.7E-46 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0699 7e6fa7442f80b65e8cebd84f4927c2de 422 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 2 419 5.7E-188 T 11-10-2018 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 APJL_1803 20621f08e25d79f4af2ce55585270312 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 1.2E-23 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1803 20621f08e25d79f4af2ce55585270312 63 Gene3D G3DSA:1.10.287.310 1 62 1.9E-28 T 11-10-2018 APJL_1803 20621f08e25d79f4af2ce55585270312 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 11-10-2018 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1803 20621f08e25d79f4af2ce55585270312 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 18.253 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1803 20621f08e25d79f4af2ce55585270312 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.1E-23 T 11-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1803 20621f08e25d79f4af2ce55585270312 63 SUPERFAMILY SSF46561 1 61 3.92E-22 T 11-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 Gene3D G3DSA:2.60.40.420 183 353 3.1E-53 T 11-10-2018 IPR008972 Cupredoxin APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 SUPERFAMILY SSF49503 180 340 7.64E-51 T 11-10-2018 IPR008972 Cupredoxin APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 Pfam PF00394 Multicopper oxidase 189 316 7.0E-5 T 11-10-2018 IPR001117 Multicopper oxidase, type 1 GO:0055114 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 PRINTS PR00695 Copper containing nitrite reductase signature 120 139 2.6E-22 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 PRINTS PR00695 Copper containing nitrite reductase signature 145 160 2.6E-22 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 PRINTS PR00695 Copper containing nitrite reductase signature 162 178 2.6E-22 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 PRINTS PR00695 Copper containing nitrite reductase signature 85 101 2.6E-22 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 PRINTS PR00695 Copper containing nitrite reductase signature 103 120 2.6E-22 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 PRINTS PR00695 Copper containing nitrite reductase signature 59 77 2.6E-22 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 SUPERFAMILY SSF49503 44 197 3.81E-39 T 11-10-2018 IPR008972 Cupredoxin APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 Gene3D G3DSA:2.60.40.420 29 182 5.4E-36 T 11-10-2018 IPR008972 Cupredoxin APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 Pfam PF07732 Multicopper oxidase 73 181 5.4E-11 T 11-10-2018 IPR011707 Multicopper oxidase, type 3 GO:0005507 APJL_2086 16a09af1fd8d01739ba7b693c8caf01c 359 TIGRFAM TIGR02376 Cu_nitrite_red: nitrite reductase, copper-containing 45 340 2.0E-96 T 11-10-2018 IPR001287 Nitrite reductase, copper-type GO:0005507|GO:0006807|GO:0050421|GO:0055114 KEGG: 00910+1.7.2.1|MetaCyc: PWY-6523|MetaCyc: PWY-6748|MetaCyc: PWY-7084 APJL_1269 60513faa53bd907457e7fdd1bc9a674e 259 SMART SM00382 37 231 4.2E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1269 60513faa53bd907457e7fdd1bc9a674e 259 Pfam PF00005 ABC transporter 28 183 1.4E-34 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1269 60513faa53bd907457e7fdd1bc9a674e 259 Gene3D G3DSA:3.40.50.300 11 258 1.0E-65 T 11-10-2018 APJL_1269 60513faa53bd907457e7fdd1bc9a674e 259 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 13 259 8.9E-119 T 11-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 APJL_1269 60513faa53bd907457e7fdd1bc9a674e 259 SUPERFAMILY SSF52540 12 247 2.66E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1269 60513faa53bd907457e7fdd1bc9a674e 259 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0836 6ba19ad3e069dbb8cf1e916cd8f0a4f2 1319 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 968 1314 4.5E-64 T 11-10-2018 IPR007452 Translocation and assembly module TamB APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 Pfam PF00551 Formyl transferase 6 183 1.4E-53 T 11-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 Gene3D G3DSA:3.40.50.170 1 208 9.4E-85 T 11-10-2018 APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 SUPERFAMILY SSF50486 207 312 3.14E-29 T 11-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 4 309 37.26 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 Gene3D G3DSA:3.10.25.10 209 316 7.3E-34 T 11-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 SUPERFAMILY SSF53328 2 206 1.83E-67 T 11-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 135 158 - T 11-10-2018 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 4 312 7.2E-104 T 11-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 APJL_1620 ced06884583b3e9f50740161f9a4e66b 316 Pfam PF02911 Formyl transferase, C-terminal domain 206 306 2.0E-27 T 11-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 APJL_1510 afb98c7d198009489782ab20c4f0f6bf 233 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 1 231 2.9E-85 T 11-10-2018 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-6798695|Reactome: R-HSA-964975 APJL_1510 afb98c7d198009489782ab20c4f0f6bf 233 Gene3D G3DSA:3.40.1190.20 1 233 1.7E-57 T 11-10-2018 IPR029056 Ribokinase-like APJL_1510 afb98c7d198009489782ab20c4f0f6bf 233 SUPERFAMILY SSF53613 2 222 2.18E-51 T 11-10-2018 IPR029056 Ribokinase-like APJL_1510 afb98c7d198009489782ab20c4f0f6bf 233 Pfam PF08543 Phosphomethylpyrimidine kinase 13 203 1.2E-17 T 11-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 APJL_1821 716442df32703e7582f885b5d2d9e200 127 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 7.7E-51 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1821 716442df32703e7582f885b5d2d9e200 127 SUPERFAMILY SSF64263 1 119 1.83E-50 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1821 716442df32703e7582f885b5d2d9e200 127 Pfam PF01196 Ribosomal protein L17 20 116 3.1E-35 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1821 716442df32703e7582f885b5d2d9e200 127 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.521 T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1821 716442df32703e7582f885b5d2d9e200 127 Gene3D G3DSA:3.90.1030.10 1 117 1.9E-48 T 11-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1821 716442df32703e7582f885b5d2d9e200 127 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 11-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0094 6b1821124b7309d3c04a2c18f9e648f7 206 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 14 197 28.215 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 APJL_0094 6b1821124b7309d3c04a2c18f9e648f7 206 Gene3D G3DSA:3.40.50.300 1 203 2.2E-59 T 11-10-2018 APJL_0094 6b1821124b7309d3c04a2c18f9e648f7 206 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 10 193 1.5E-74 T 11-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 APJL_0094 6b1821124b7309d3c04a2c18f9e648f7 206 Pfam PF01926 50S ribosome-binding GTPase 28 146 1.7E-21 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0094 6b1821124b7309d3c04a2c18f9e648f7 206 SUPERFAMILY SSF52540 16 199 7.19E-36 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_2010 3ac4df643607843839bc782ba73626d0 186 SUPERFAMILY SSF102405 1 178 1.1E-57 T 11-10-2018 APJL_2010 3ac4df643607843839bc782ba73626d0 186 Pfam PF03641 Possible lysine decarboxylase 45 171 4.9E-34 T 11-10-2018 IPR031100 LOG family APJL_2010 3ac4df643607843839bc782ba73626d0 186 Gene3D G3DSA:3.40.50.450 1 186 6.2E-67 T 11-10-2018 APJL_2010 3ac4df643607843839bc782ba73626d0 186 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 2 178 3.3E-50 T 11-10-2018 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG APJL_0446 b486c0a3b5a44e6298f0483f56df4e81 345 SUPERFAMILY SSF53756 2 341 6.59E-67 T 11-10-2018 APJL_0446 b486c0a3b5a44e6298f0483f56df4e81 345 Gene3D G3DSA:3.40.50.2000 1 147 1.0E-28 T 11-10-2018 APJL_0446 b486c0a3b5a44e6298f0483f56df4e81 345 Gene3D G3DSA:3.40.50.2000 162 336 8.8E-18 T 11-10-2018 APJL_0446 b486c0a3b5a44e6298f0483f56df4e81 345 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 70 318 6.1E-17 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 4 203 37.748 T 11-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 117 202 3.7E-18 T 11-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 Gene3D G3DSA:1.10.287.1080 113 204 2.6E-29 T 11-10-2018 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 SUPERFAMILY SSF141734 3 109 1.03E-45 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 Gene3D G3DSA:3.10.20.400 1 93 3.0E-35 T 11-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 116 198 8.8E-31 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 29 102 5.7E-32 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 112 198 19.285 T 11-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 SUPERFAMILY SSF101386 114 202 7.41E-26 T 11-10-2018 APJL_2078 3f6b9143a6139164d7f96a4b83f851be 214 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 52 102 9.0E-25 T 11-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 APJL_0109 b7e9b46bf0741c95512f76940f052632 261 SMART SM00346 9 99 1.7E-36 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APJL_0109 b7e9b46bf0741c95512f76940f052632 261 SUPERFAMILY SSF55781 76 258 2.62E-41 T 11-10-2018 APJL_0109 b7e9b46bf0741c95512f76940f052632 261 Gene3D G3DSA:1.10.10.10 8 80 3.5E-20 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0109 b7e9b46bf0741c95512f76940f052632 261 Pfam PF01614 Bacterial transcriptional regulator 129 254 2.7E-39 T 11-10-2018 IPR014757 Transcription regulator IclR, C-terminal APJL_0109 b7e9b46bf0741c95512f76940f052632 261 Pfam PF09339 IclR helix-turn-helix domain 11 59 1.8E-15 T 11-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 APJL_0109 b7e9b46bf0741c95512f76940f052632 261 Gene3D G3DSA:3.30.450.40 81 261 1.3E-59 T 11-10-2018 IPR029016 GAF-like domain superfamily APJL_0109 b7e9b46bf0741c95512f76940f052632 261 SUPERFAMILY SSF46785 10 83 6.69E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_1831 3a843c19e40e2f5e7f7f5c76bac67571 368 Pfam PF01497 Periplasmic binding protein 55 315 4.4E-49 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APJL_1831 3a843c19e40e2f5e7f7f5c76bac67571 368 SUPERFAMILY SSF53807 28 338 2.2E-47 T 11-10-2018 APJL_1831 3a843c19e40e2f5e7f7f5c76bac67571 368 Gene3D G3DSA:3.40.50.1980 27 368 1.9E-89 T 11-10-2018 APJL_0738 2516bc726bf6304ca05d1bda27d04b80 230 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 56 69 - T 11-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_0738 2516bc726bf6304ca05d1bda27d04b80 230 SMART SM00934 4 225 2.2E-94 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_0738 2516bc726bf6304ca05d1bda27d04b80 230 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 6 225 1.4E-60 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_0738 2516bc726bf6304ca05d1bda27d04b80 230 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 2 230 40.48 T 11-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_0738 2516bc726bf6304ca05d1bda27d04b80 230 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 4 223 6.1E-49 T 11-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 APJL_0738 2516bc726bf6304ca05d1bda27d04b80 230 SUPERFAMILY SSF51366 2 228 3.88E-79 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_0738 2516bc726bf6304ca05d1bda27d04b80 230 Gene3D G3DSA:3.20.20.70 1 229 5.5E-87 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0961 21cd4d9374737020433d7ab43854ed88 187 Gene3D G3DSA:3.40.390.50 27 126 2.9E-9 T 11-10-2018 APJL_0961 21cd4d9374737020433d7ab43854ed88 187 Pfam PF06114 IrrE N-terminal-like domain 43 177 2.5E-17 T 11-10-2018 IPR010359 IrrE N-terminal-like domain APJL_1967 7292a4b1ca774814af0d2bbb119525e6 655 Gene3D G3DSA:1.20.1080.10 306 503 3.8E-7 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APJL_1967 7292a4b1ca774814af0d2bbb119525e6 655 PIRSF PIRSF015380 1 655 3.0E-289 T 11-10-2018 IPR011385 Putative site-specific recombinase Gcr APJL_1967 7292a4b1ca774814af0d2bbb119525e6 655 Pfam PF10136 Site-specific recombinase 24 650 1.3E-221 T 11-10-2018 IPR011385 Putative site-specific recombinase Gcr APJL_1296 3985edd4f9c4a5f0a9ce8fe0a0e54bd5 112 Gene3D G3DSA:1.20.1290.10 1 112 1.8E-25 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APJL_1296 3985edd4f9c4a5f0a9ce8fe0a0e54bd5 112 Pfam PF02627 Carboxymuconolactone decarboxylase family 24 106 5.1E-19 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APJL_1296 3985edd4f9c4a5f0a9ce8fe0a0e54bd5 112 SUPERFAMILY SSF69118 2 107 1.31E-26 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APJL_1296 3985edd4f9c4a5f0a9ce8fe0a0e54bd5 112 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 41 90 2.3E-18 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APJL_1689 5f9f0a15b3a2c3f7bc248a931fb4037d 263 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 9 258 2.4E-58 T 11-10-2018 IPR000150 Cof family GO:0016787 APJL_1689 5f9f0a15b3a2c3f7bc248a931fb4037d 263 SUPERFAMILY SSF56784 6 262 1.44E-63 T 11-10-2018 IPR036412 HAD-like superfamily APJL_1689 5f9f0a15b3a2c3f7bc248a931fb4037d 263 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 9 231 5.5E-26 T 11-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 APJL_1689 5f9f0a15b3a2c3f7bc248a931fb4037d 263 Gene3D G3DSA:3.40.50.1000 9 258 2.4E-69 T 11-10-2018 IPR023214 HAD superfamily APJL_1689 5f9f0a15b3a2c3f7bc248a931fb4037d 263 ProSitePatterns PS01229 Hypothetical cof family signature 2. 212 234 - T 11-10-2018 APJL_1689 5f9f0a15b3a2c3f7bc248a931fb4037d 263 Gene3D G3DSA:3.30.1240.10 86 187 2.4E-69 T 11-10-2018 APJL_1689 5f9f0a15b3a2c3f7bc248a931fb4037d 263 Pfam PF08282 haloacid dehalogenase-like hydrolase 9 258 3.9E-62 T 11-10-2018 APJL_1689 5f9f0a15b3a2c3f7bc248a931fb4037d 263 ProSitePatterns PS01228 Hypothetical cof family signature 1. 8 19 - T 11-10-2018 APJL_1043 70fb6c18bcd2636ff9b868ff0bb71d2a 266 Pfam PF00535 Glycosyl transferase family 2 4 140 3.9E-26 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APJL_1043 70fb6c18bcd2636ff9b868ff0bb71d2a 266 Gene3D G3DSA:3.90.550.10 1 235 4.0E-33 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1043 70fb6c18bcd2636ff9b868ff0bb71d2a 266 SUPERFAMILY SSF53448 2 229 1.44E-40 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1718 3489721736e172ccd182c6b8077a70f7 144 Pfam PF05025 RbsD / FucU transport protein family 3 141 7.5E-38 T 11-10-2018 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 APJL_1718 3489721736e172ccd182c6b8077a70f7 144 SUPERFAMILY SSF102546 1 141 1.7E-43 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 APJL_1718 3489721736e172ccd182c6b8077a70f7 144 Gene3D G3DSA:3.40.1650.10 1 143 1.1E-50 T 11-10-2018 IPR023750 RbsD-like superfamily GO:0005996|GO:0016853|GO:0048029 Reactome: R-HSA-6787639 APJL_1718 3489721736e172ccd182c6b8077a70f7 144 Hamap MF_01662 L-fucose mutarotase [fucU]. 1 142 48.241 T 11-10-2018 IPR023751 L-fucose mutarotase GO:0016854|GO:0042354|GO:0042806 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 SUPERFAMILY SSF143800 1 66 2.0E-29 T 11-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 Gene3D G3DSA:2.30.170.50 1 70 4.3E-34 T 11-10-2018 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 65 3.0E-36 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 Pfam PF01197 Ribosomal protein L31 1 64 3.1E-32 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.7E-24 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 PRINTS PR01249 Ribosomal protein L31 signature 46 64 5.7E-24 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 PRINTS PR01249 Ribosomal protein L31 signature 31 46 5.7E-24 T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 11-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1002 14833ed8d99ca3820e7c5d7408335911 70 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 31.813 T 11-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_0892 5119f7e42b544c6b6d356fb804d1fb05 148 SUPERFAMILY SSF54523 35 145 5.23E-23 T 11-10-2018 APJL_0892 5119f7e42b544c6b6d356fb804d1fb05 148 Pfam PF07963 Prokaryotic N-terminal methylation motif 13 33 3.8E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APJL_0892 5119f7e42b544c6b6d356fb804d1fb05 148 Gene3D G3DSA:3.30.700.10 14 141 3.3E-27 T 11-10-2018 APJL_0892 5119f7e42b544c6b6d356fb804d1fb05 148 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 13 34 1.5E-7 T 11-10-2018 IPR012902 Prokaryotic N-terminal methylation site APJL_2048 c17ebf6d43206efee172352538ecb83c 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 3.4E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 3.4E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 3.4E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 Gene3D G3DSA:2.40.50.100 21 85 4.6E-31 T 11-10-2018 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 Pfam PF01016 Ribosomal L27 protein 2 82 1.2E-39 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 2.0E-18 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.154 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 2.8E-44 T 11-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 11-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_2048 c17ebf6d43206efee172352538ecb83c 85 SUPERFAMILY SSF110324 2 83 5.23E-34 T 11-10-2018 APJL_1445 89d47d73da8541043493860c4089de6e 591 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 11-10-2018 IPR020845 AMP-binding, conserved site APJL_1445 89d47d73da8541043493860c4089de6e 591 SUPERFAMILY SSF56801 7 590 5.89E-112 T 11-10-2018 APJL_1445 89d47d73da8541043493860c4089de6e 591 Pfam PF00501 AMP-binding enzyme 14 461 3.6E-101 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 Gene3D G3DSA:3.20.20.150 1 279 1.9E-111 T 11-10-2018 APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 175 182 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 279 43.227 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 Pfam PF01261 Xylose isomerase-like TIM barrel 20 239 3.0E-40 T 11-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 215 231 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 2 277 1.7E-107 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 69 77 - T 11-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 SMART SM00518 3 279 7.1E-126 T 11-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 APJL_0375 2372085063fe1ab9a4f0f048aa544292 280 SUPERFAMILY SSF51658 1 278 1.31E-100 T 11-10-2018 IPR036237 Xylose isomerase-like superfamily APJL_0291 9cc96b05187274f56210031c28c9cf10 288 SUPERFAMILY SSF161098 8 277 6.28E-52 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0291 9cc96b05187274f56210031c28c9cf10 288 Gene3D G3DSA:1.10.3720.10 8 283 2.4E-51 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0291 9cc96b05187274f56210031c28c9cf10 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 285 5.8E-16 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1251 b95eb27b4b9073eeabd1c56f9143ddad 296 SUPERFAMILY SSF161098 10 296 1.68E-67 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1251 b95eb27b4b9073eeabd1c56f9143ddad 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 286 6.4E-18 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1251 b95eb27b4b9073eeabd1c56f9143ddad 296 Gene3D G3DSA:1.10.3720.10 1 283 2.0E-72 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0497 4e9822b1a551349da1ce95324458475b 269 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 11-10-2018 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APJL_0497 4e9822b1a551349da1ce95324458475b 269 Gene3D G3DSA:3.20.20.70 1 269 8.4E-90 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0497 4e9822b1a551349da1ce95324458475b 269 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 264 5.3E-104 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APJL_0497 4e9822b1a551349da1ce95324458475b 269 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 266 35.713 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APJL_0497 4e9822b1a551349da1ce95324458475b 269 Pfam PF00290 Tryptophan synthase alpha chain 8 267 3.1E-93 T 11-10-2018 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 APJL_0497 4e9822b1a551349da1ce95324458475b 269 SUPERFAMILY SSF51366 1 267 1.6E-84 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_1092 041f5c04d3976298451f8c821a17cc57 295 TIGRFAM TIGR01932 hflC: HflC protein 1 156 6.3E-53 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 APJL_1092 041f5c04d3976298451f8c821a17cc57 295 TIGRFAM TIGR01932 hflC: HflC protein 158 291 4.3E-52 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 APJL_1092 041f5c04d3976298451f8c821a17cc57 295 SUPERFAMILY SSF117892 57 195 1.44E-26 T 11-10-2018 IPR036013 Band 7/SPFH domain superfamily APJL_1092 041f5c04d3976298451f8c821a17cc57 295 Gene3D G3DSA:3.30.479.30 53 192 3.2E-20 T 11-10-2018 APJL_1092 041f5c04d3976298451f8c821a17cc57 295 SMART SM00244 18 190 5.7E-43 T 11-10-2018 IPR001107 Band 7 domain APJL_1092 041f5c04d3976298451f8c821a17cc57 295 Pfam PF01145 SPFH domain / Band 7 family 22 207 3.0E-31 T 11-10-2018 IPR001107 Band 7 domain APJL_1092 041f5c04d3976298451f8c821a17cc57 295 PIRSF PIRSF005651 1 295 1.3E-96 T 11-10-2018 IPR010200 HflC GO:0016021|GO:0052547 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 Gene3D G3DSA:3.40.190.80 157 260 2.3E-22 T 11-10-2018 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 Gene3D G3DSA:3.30.540.10 5 150 2.7E-41 T 11-10-2018 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 Hamap MF_02095 3'(2'),5'-bisphosphate nucleotidase CysQ [cysQ]. 8 257 35.871 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 Pfam PF00459 Inositol monophosphatase family 6 248 1.9E-48 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 1.6E-13 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 1.6E-13 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 86 102 1.6E-13 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 151 174 1.6E-13 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 PRINTS PR00377 Inositol monophosphatase superfamily signature 212 236 1.6E-13 T 11-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 SUPERFAMILY SSF56655 7 267 8.77E-70 T 11-10-2018 APJL_1325 9f703f901ebe50a4983f91abd7d1639c 271 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 8 255 2.3E-86 T 11-10-2018 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ GO:0000287|GO:0006790|GO:0008441 KEGG: 00920+3.1.3.7 APJL_1677 ad0252a615a8430ab1258351a34279fc 89 Gene3D G3DSA:3.40.1260.10 1 89 7.5E-14 T 11-10-2018 IPR027396 DsrEFH-like APJL_1677 ad0252a615a8430ab1258351a34279fc 89 SUPERFAMILY SSF75169 1 88 1.3E-19 T 11-10-2018 IPR027396 DsrEFH-like APJL_1677 ad0252a615a8430ab1258351a34279fc 89 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 87 9.0E-15 T 11-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 APJL_1677 ad0252a615a8430ab1258351a34279fc 89 Pfam PF04077 DsrH like protein 9 83 5.8E-15 T 11-10-2018 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 Gene3D G3DSA:3.40.50.1980 143 312 3.1E-44 T 11-10-2018 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 Gene3D G3DSA:3.40.50.1980 48 133 1.1E-11 T 11-10-2018 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 SUPERFAMILY SSF53807 55 311 2.0E-42 T 11-10-2018 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 204 219 1.2E-13 T 11-10-2018 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 292 305 1.2E-13 T 11-10-2018 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 228 246 1.2E-13 T 11-10-2018 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 71 89 1.2E-13 T 11-10-2018 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 102 117 1.2E-13 T 11-10-2018 APJL_2064 ccec7d543c9fc586dbface2391a8d008 318 Pfam PF01497 Periplasmic binding protein 55 254 1.0E-12 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APJL_0336 c2ce49ddacdcad380ece3b3cd1fcbec6 179 Gene3D G3DSA:1.20.1550.10 1 178 2.4E-55 T 11-10-2018 IPR023380 DsbB-like superfamily APJL_0336 c2ce49ddacdcad380ece3b3cd1fcbec6 179 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 169 22.314 T 11-10-2018 IPR022920 Disulphide bond formation protein DsbB APJL_0336 c2ce49ddacdcad380ece3b3cd1fcbec6 179 SUPERFAMILY SSF158442 15 163 2.75E-43 T 11-10-2018 IPR023380 DsbB-like superfamily APJL_0336 c2ce49ddacdcad380ece3b3cd1fcbec6 179 Pfam PF02600 Disulfide bond formation protein DsbB 12 161 3.8E-44 T 11-10-2018 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 APJL_1067 347f15e1f501080f8a0883ba19abb79a 248 SMART SM00028 125 158 0.0051 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1067 347f15e1f501080f8a0883ba19abb79a 248 SMART SM00028 196 229 6.4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1067 347f15e1f501080f8a0883ba19abb79a 248 Gene3D G3DSA:1.25.40.10 155 246 1.8E-22 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1067 347f15e1f501080f8a0883ba19abb79a 248 Gene3D G3DSA:1.25.40.10 2 153 2.2E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1067 347f15e1f501080f8a0883ba19abb79a 248 SUPERFAMILY SSF48452 117 231 8.68E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1739 5a31e6b4cf689c52ef4617b1f4754e25 149 SUPERFAMILY SSF47413 12 79 7.24E-14 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_1739 5a31e6b4cf689c52ef4617b1f4754e25 149 Gene3D G3DSA:1.10.260.40 10 96 2.4E-13 T 11-10-2018 APJL_1739 5a31e6b4cf689c52ef4617b1f4754e25 149 Pfam PF01381 Helix-turn-helix 19 73 1.0E-8 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_1739 5a31e6b4cf689c52ef4617b1f4754e25 149 SMART SM00530 18 73 1.1E-9 T 11-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 APJL_1723 77e44f87110aaac5b0491c3fd90a473e 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 107 1.3E-28 T 11-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 APJL_1723 77e44f87110aaac5b0491c3fd90a473e 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 213 5.1E-23 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_1723 77e44f87110aaac5b0491c3fd90a473e 219 Gene3D G3DSA:1.10.3720.10 1 216 1.4E-55 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1723 77e44f87110aaac5b0491c3fd90a473e 219 SUPERFAMILY SSF161098 11 199 3.92E-45 T 11-10-2018 IPR035906 MetI-like superfamily APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 249 264 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 459 481 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 75 96 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 321 341 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 216 234 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 163 183 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 412 435 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR00701 60kDa inner membrane protein signature 496 519 1.9E-98 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 348 2.3E-110 T 11-10-2018 IPR028053 Membrane insertase YidC, N-terminal APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 Gene3D G3DSA:2.70.98.90 65 330 6.3E-89 T 11-10-2018 IPR038221 YidC, periplasmic domain superfamily APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR01900 YidC translocation/secretion protein signature 336 352 1.9E-26 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR01900 YidC translocation/secretion protein signature 465 480 1.9E-26 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 PRINTS PR01900 YidC translocation/secretion protein signature 485 509 1.9E-26 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 532 25.821 T 11-10-2018 IPR019998 Membrane insertase YidC GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 Pfam PF14849 YidC periplasmic domain 70 339 1.3E-83 T 11-10-2018 IPR038210 Membrane insertase YidC, periplasmic domain APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 Pfam PF02096 60Kd inner membrane protein 351 530 4.2E-65 T 11-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 APJL_1456 219d2cc1f14a2ae0d090c298695aa87e 542 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 350 530 2.2E-75 T 11-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1435 3a1ec30f61ff409d5e8a0d1e1668407e 331 PIRSF PIRSF015268 1 331 7.0E-123 T 11-10-2018 IPR011204 Virulence protein RhuM-like APJL_1435 3a1ec30f61ff409d5e8a0d1e1668407e 331 Pfam PF13310 Virulence protein RhuM family 60 306 5.5E-99 T 11-10-2018 IPR011204 Virulence protein RhuM-like APJL_0595 0df56f4389206aaba15c46238d69290a 131 Gene3D G3DSA:3.30.230.10 2 131 1.3E-52 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_0595 0df56f4389206aaba15c46238d69290a 131 ProSitePatterns PS00360 Ribosomal protein S9 signature. 70 88 - T 11-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 APJL_0595 0df56f4389206aaba15c46238d69290a 131 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 2 131 32.664 T 11-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid APJL_0595 0df56f4389206aaba15c46238d69290a 131 SUPERFAMILY SSF54211 6 131 3.64E-48 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_0595 0df56f4389206aaba15c46238d69290a 131 Pfam PF00380 Ribosomal protein S9/S16 11 131 2.9E-46 T 11-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 APJL_1056 974794d65757fc7a6c5448bf3df3f985 160 Pfam PF09335 SNARE associated Golgi protein 59 155 8.9E-9 T 11-10-2018 IPR032816 SNARE associated Golgi protein APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 6 238 2.8E-100 T 11-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 SMART SM00345 16 75 3.5E-20 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 75 4.2E-19 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 242 131.096 T 11-10-2018 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 SUPERFAMILY SSF48008 83 233 3.53E-58 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 SUPERFAMILY SSF46785 11 79 1.5E-16 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 Gene3D G3DSA:1.10.10.10 5 83 1.3E-21 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 6.5E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 6.5E-10 T 11-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 Gene3D G3DSA:1.20.120.530 85 241 7.5E-30 T 11-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal APJL_0338 1f9be9f255ef81ae89b5972b5658543d 242 Pfam PF07840 FadR C-terminal domain 76 238 5.1E-62 T 11-10-2018 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 APJL_0440 0177034c12607cc13b707438aeb0c1e6 305 Pfam PF00480 ROK family 4 304 8.9E-90 T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 APJL_0440 0177034c12607cc13b707438aeb0c1e6 305 SUPERFAMILY SSF53067 1 304 2.08E-56 T 11-10-2018 APJL_0440 0177034c12607cc13b707438aeb0c1e6 305 ProSitePatterns PS01125 ROK family signature. 132 159 - T 11-10-2018 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 APJL_0440 0177034c12607cc13b707438aeb0c1e6 305 Gene3D G3DSA:3.30.420.40 121 293 5.9E-83 T 11-10-2018 APJL_0440 0177034c12607cc13b707438aeb0c1e6 305 Gene3D G3DSA:3.30.420.40 6 300 5.9E-83 T 11-10-2018 APJL_2044 9efd0ad5644d34020059632eb2bf59ed 272 SUPERFAMILY SSF52151 1 260 5.23E-37 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APJL_2044 9efd0ad5644d34020059632eb2bf59ed 272 Pfam PF01734 Patatin-like phospholipase 1 157 3.7E-12 T 11-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 APJL_2044 9efd0ad5644d34020059632eb2bf59ed 272 Gene3D G3DSA:3.40.1090.10 39 184 4.8E-13 T 11-10-2018 APJL_1488 061ae5af9f813a8975abe9cd606f2bcc 350 Gene3D G3DSA:3.90.550.10 4 206 9.3E-35 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1488 061ae5af9f813a8975abe9cd606f2bcc 350 SUPERFAMILY SSF53448 5 231 7.13E-41 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1488 061ae5af9f813a8975abe9cd606f2bcc 350 Pfam PF00535 Glycosyl transferase family 2 7 130 1.3E-23 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APJL_0381 6c505bf4c896bcc249b43292422a9676 290 Pfam PF04393 Protein of unknown function (DUF535) 22 286 2.7E-83 T 11-10-2018 IPR007488 Protein of unknown function DUF535 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 Gene3D G3DSA:2.60.40.180 16 136 5.1E-43 T 11-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 SMART SM00095 21 136 1.6E-7 T 11-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 SUPERFAMILY SSF49472 24 137 1.29E-39 T 11-10-2018 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 PRINTS PR00189 Transthyretin signature 87 116 2.2E-8 T 11-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 PRINTS PR00189 Transthyretin signature 25 45 2.2E-8 T 11-10-2018 IPR000895 Transthyretin/hydroxyisourate hydrolase Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 ProSitePatterns PS00769 Transthyretin signature 2. 120 132 - T 11-10-2018 IPR023419 Transthyretin, conserved site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 25 137 8.9E-43 T 11-10-2018 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394|MetaCyc: PWY-7849 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 ProSitePatterns PS00768 Transthyretin signature 1. 29 44 - T 11-10-2018 IPR023418 Transthyretin, thyroxine binding site Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APJL_0825 30f8ddbfc744145c1bcd3be953a89caa 137 Pfam PF00576 HIUase/Transthyretin family 26 136 6.9E-40 T 11-10-2018 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Reactome: R-HSA-2453864|Reactome: R-HSA-2453902|Reactome: R-HSA-3000171|Reactome: R-HSA-6798695|Reactome: R-HSA-975634|Reactome: R-HSA-977225 APJL_0326 e461631bb680e5e7a5d45faa4d41d41d 248 SUPERFAMILY SSF69572 2 246 4.71E-84 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 APJL_0326 e461631bb680e5e7a5d45faa4d41d41d 248 TIGRFAM TIGR02355 moeB: molybdopterin synthase sulfurylase MoeB 7 246 8.7E-132 T 11-10-2018 IPR012730 Molybdopterin synthase sulfurylase MoeB GO:0006777 MetaCyc: PWY-6823 APJL_0326 e461631bb680e5e7a5d45faa4d41d41d 248 Pfam PF00899 ThiF family 11 243 4.3E-64 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APJL_0326 e461631bb680e5e7a5d45faa4d41d41d 248 Gene3D G3DSA:3.40.50.720 3 248 5.7E-88 T 11-10-2018 APJL_0706 22df428ffc3eab1cd2a2d58b60f7c8eb 155 Pfam PF04074 Domain of unknown function (DUF386) 1 151 1.5E-38 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family APJL_0706 22df428ffc3eab1cd2a2d58b60f7c8eb 155 Gene3D G3DSA:2.60.120.370 1 154 8.3E-45 T 11-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily APJL_0706 22df428ffc3eab1cd2a2d58b60f7c8eb 155 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 153 4.7E-41 T 11-10-2018 IPR004375 YhcH/YjgK/YiaL family APJL_0706 22df428ffc3eab1cd2a2d58b60f7c8eb 155 SUPERFAMILY SSF51197 1 155 4.12E-47 T 11-10-2018 APJL_1736 73fbc042be59d831aec6397a96758d9f 237 TIGRFAM TIGR00760 araD: L-ribulose-5-phosphate 4-epimerase 11 237 3.6E-118 T 11-10-2018 IPR004661 L-ribulose-5-phosphate 4-epimerase GO:0008270|GO:0008742|GO:0019572 KEGG: 00040+5.1.3.4|KEGG: 00053+5.1.3.4|MetaCyc: PWY-6961 APJL_1736 73fbc042be59d831aec6397a96758d9f 237 SMART SM01007 14 204 5.4E-69 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APJL_1736 73fbc042be59d831aec6397a96758d9f 237 Gene3D G3DSA:3.40.225.10 10 237 9.0E-60 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APJL_1736 73fbc042be59d831aec6397a96758d9f 237 SUPERFAMILY SSF53639 11 229 6.28E-70 T 11-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily APJL_1736 73fbc042be59d831aec6397a96758d9f 237 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 16 202 2.5E-46 T 11-10-2018 IPR001303 Class II aldolase/adducin N-terminal APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 Gene3D G3DSA:3.40.50.300 8 188 1.8E-51 T 11-10-2018 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 Pfam PF07650 KH domain 213 289 6.1E-19 T 11-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 SUPERFAMILY SSF52540 15 210 7.48E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 Pfam PF01926 50S ribosome-binding GTPase 15 129 1.8E-24 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 Hamap MF_00367 GTPase Era [era]. 10 301 36.029 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 TIGRFAM TIGR00436 era: GTP-binding protein Era 13 284 1.1E-121 T 11-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 15 35 4.7E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 83 101 4.7E-6 T 11-10-2018 IPR006073 GTP binding domain GO:0005525 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 SUPERFAMILY SSF54814 186 301 4.36E-42 T 11-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 175 5.5E-38 T 11-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 APJL_0537 43baa985f64b0c4894a6e05b0e311475 304 Gene3D G3DSA:3.30.300.20 190 304 5.5E-43 T 11-10-2018 IPR015946 K homology domain-like, alpha/beta APJL_1808 e6af9c670d478a4b1b8167c8fbdcd2a7 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 11-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1808 e6af9c670d478a4b1b8167c8fbdcd2a7 101 Gene3D G3DSA:4.10.830.10 40 101 7.3E-24 T 11-10-2018 APJL_1808 e6af9c670d478a4b1b8167c8fbdcd2a7 101 SUPERFAMILY SSF57716 2 101 2.99E-38 T 11-10-2018 APJL_1808 e6af9c670d478a4b1b8167c8fbdcd2a7 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 4.1E-27 T 11-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1808 e6af9c670d478a4b1b8167c8fbdcd2a7 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.053 T 11-10-2018 IPR023036 Ribosomal protein S14, bacterial/plastid APJL_2034 f1d614dd1338f0fe0b970ea90e64461f 195 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 80 1.1E-30 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 APJL_2034 f1d614dd1338f0fe0b970ea90e64461f 195 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 5.9E-31 T 11-10-2018 APJL_2034 f1d614dd1338f0fe0b970ea90e64461f 195 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 5.9E-31 T 11-10-2018 APJL_2034 f1d614dd1338f0fe0b970ea90e64461f 195 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 5.9E-31 T 11-10-2018 APJL_2034 f1d614dd1338f0fe0b970ea90e64461f 195 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 164 18.508 T 11-10-2018 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 APJL_0601 1ace01cb2b670ad2ea4ea93fedb0969d 220 Gene3D G3DSA:3.40.109.10 2 220 5.0E-60 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_0601 1ace01cb2b670ad2ea4ea93fedb0969d 220 Pfam PF00881 Nitroreductase family 15 199 2.8E-25 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 APJL_0601 1ace01cb2b670ad2ea4ea93fedb0969d 220 SUPERFAMILY SSF55469 8 218 9.16E-55 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 2.3E-18 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 Gene3D G3DSA:1.10.10.10 7 90 7.4E-23 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 5.3E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 5.3E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 5.3E-9 T 11-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 SUPERFAMILY SSF46785 3 85 1.03E-21 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 Gene3D G3DSA:3.40.190.10 163 260 6.9E-48 T 11-10-2018 APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 SUPERFAMILY SSF53850 93 293 4.66E-36 T 11-10-2018 APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 Gene3D G3DSA:3.40.190.10 103 287 6.9E-48 T 11-10-2018 APJL_0132 bb68f8a292a6e3e0cec06d8db6187337 296 Pfam PF03466 LysR substrate binding domain 93 289 1.2E-34 T 11-10-2018 IPR005119 LysR, substrate-binding APJL_0074 aa9be973456762766d4f102ec1d971ee 221 Gene3D G3DSA:1.10.8.420 21 72 2.9E-18 T 11-10-2018 APJL_0074 aa9be973456762766d4f102ec1d971ee 221 Gene3D G3DSA:3.40.1360.10 98 219 2.8E-40 T 11-10-2018 APJL_0074 aa9be973456762766d4f102ec1d971ee 221 SMART SM00493 101 186 8.9E-15 T 11-10-2018 IPR006171 TOPRIM domain APJL_0074 aa9be973456762766d4f102ec1d971ee 221 TIGRFAM TIGR00615 recR: recombination protein RecR 22 217 4.1E-79 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 APJL_0074 aa9be973456762766d4f102ec1d971ee 221 SUPERFAMILY SSF111304 22 219 6.54E-72 T 11-10-2018 IPR023627 Recombination protein RecR APJL_0074 aa9be973456762766d4f102ec1d971ee 221 Pfam PF02132 RecR protein 62 97 2.3E-14 T 11-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger APJL_0074 aa9be973456762766d4f102ec1d971ee 221 Hamap MF_00017 Recombination protein RecR [recR]. 1 219 93.92 T 11-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 APJL_0074 aa9be973456762766d4f102ec1d971ee 221 ProSitePatterns PS01300 RecR protein signature. 77 98 - T 11-10-2018 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 APJL_0074 aa9be973456762766d4f102ec1d971ee 221 Pfam PF13662 Toprim domain 102 192 3.1E-21 T 11-10-2018 IPR006171 TOPRIM domain APJL_1212 9b4c925604b9f327754a84faef15b3b3 349 SUPERFAMILY SSF51679 5 346 4.36E-75 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APJL_1212 9b4c925604b9f327754a84faef15b3b3 349 Pfam PF00296 Luciferase-like monooxygenase 18 314 1.3E-32 T 11-10-2018 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 APJL_1212 9b4c925604b9f327754a84faef15b3b3 349 Gene3D G3DSA:3.20.20.30 1 348 1.7E-90 T 11-10-2018 IPR036661 Luciferase-like domain superfamily GO:0016705|GO:0055114 APJL_1212 9b4c925604b9f327754a84faef15b3b3 349 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 7 267 7.9E-105 T 11-10-2018 IPR019949 Luciferase family oxidoreductase, group 1 APJL_1352 afd3b6f2d6cc80a4080dd4f16bc341ea 569 Pfam PF00374 Nickel-dependent hydrogenase 41 554 3.1E-205 T 11-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 APJL_1352 afd3b6f2d6cc80a4080dd4f16bc341ea 569 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 41 66 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 APJL_1352 afd3b6f2d6cc80a4080dd4f16bc341ea 569 Gene3D G3DSA:1.10.645.10 1 554 4.2E-215 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_1352 afd3b6f2d6cc80a4080dd4f16bc341ea 569 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 545 554 - T 11-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 APJL_1352 afd3b6f2d6cc80a4080dd4f16bc341ea 569 SUPERFAMILY SSF56762 3 554 1.31E-166 T 11-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 APJL_0856 5b03a2b1cdbe744e0496e1ba1b102e8e 156 SUPERFAMILY SSF52833 1 153 1.17E-45 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0856 5b03a2b1cdbe744e0496e1ba1b102e8e 156 Pfam PF00578 AhpC/TSA family 7 134 1.2E-35 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APJL_0856 5b03a2b1cdbe744e0496e1ba1b102e8e 156 Gene3D G3DSA:3.40.30.10 3 154 3.1E-46 T 11-10-2018 APJL_1452 93368869cef55452d501882b9da4f9f6 330 SUPERFAMILY SSF53822 26 329 1.74E-80 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_1452 93368869cef55452d501882b9da4f9f6 330 Pfam PF13407 Periplasmic binding protein domain 28 298 8.1E-60 T 11-10-2018 IPR025997 Periplasmic binding protein APJL_1452 93368869cef55452d501882b9da4f9f6 330 Gene3D G3DSA:3.40.50.2300 28 299 1.5E-106 T 11-10-2018 APJL_1452 93368869cef55452d501882b9da4f9f6 330 Gene3D G3DSA:3.40.50.2300 134 278 1.5E-106 T 11-10-2018 APJL_0103 4aef35d28857292ec4c0d2dc14fb4b97 322 Pfam PF03916 Polysulphide reductase, NrfD 6 321 9.9E-92 T 11-10-2018 IPR005614 NrfD family APJL_0103 4aef35d28857292ec4c0d2dc14fb4b97 322 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 6 321 1.6E-145 T 11-10-2018 IPR017566 NrfD APJL_0103 4aef35d28857292ec4c0d2dc14fb4b97 322 Gene3D G3DSA:1.20.1630.10 1 318 2.7E-7 T 11-10-2018 APJL_0658 35aed1910ec7959cf10fda4ae31ca29f 407 SUPERFAMILY SSF52980 288 374 6.35E-7 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APJL_0658 35aed1910ec7959cf10fda4ae31ca29f 407 Pfam PF13173 AAA domain 20 135 1.8E-22 T 11-10-2018 APJL_0658 35aed1910ec7959cf10fda4ae31ca29f 407 Pfam PF13635 Domain of unknown function (DUF4143) 196 355 5.4E-27 T 11-10-2018 IPR025420 Domain of unknown function DUF4143 APJL_0658 35aed1910ec7959cf10fda4ae31ca29f 407 SUPERFAMILY SSF52540 7 178 1.14E-16 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0245 355a7efef9793d1421e5bf1e8ab87d5e 395 Gene3D G3DSA:3.40.50.2000 297 389 3.1E-8 T 11-10-2018 APJL_0245 355a7efef9793d1421e5bf1e8ab87d5e 395 SUPERFAMILY SSF48452 31 104 5.48E-17 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0245 355a7efef9793d1421e5bf1e8ab87d5e 395 Gene3D G3DSA:1.25.40.10 14 103 1.9E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0245 355a7efef9793d1421e5bf1e8ab87d5e 395 SUPERFAMILY SSF53756 131 388 2.2E-21 T 11-10-2018 APJL_0245 355a7efef9793d1421e5bf1e8ab87d5e 395 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 309 341 5.4E-7 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APJL_1088 cfdb70e66ed16c24eaefe21b9b70c149 196 Hamap MF_00528 Septum formation protein Maf [maf]. 5 195 31.933 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APJL_1088 cfdb70e66ed16c24eaefe21b9b70c149 196 SUPERFAMILY SSF52972 2 190 2.49E-61 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APJL_1088 cfdb70e66ed16c24eaefe21b9b70c149 196 PIRSF PIRSF006305 1 196 2.9E-53 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APJL_1088 cfdb70e66ed16c24eaefe21b9b70c149 196 Gene3D G3DSA:3.90.950.10 4 195 1.3E-68 T 11-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like APJL_1088 cfdb70e66ed16c24eaefe21b9b70c149 196 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 189 1.5E-53 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APJL_1088 cfdb70e66ed16c24eaefe21b9b70c149 196 Pfam PF02545 Maf-like protein 5 190 2.6E-57 T 11-10-2018 IPR003697 Maf-like protein GO:0047429 APJL_1940 9f9d8346aec389943b3a26f94923bc58 206 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 157 36.3 T 11-10-2018 IPR022927 RNA pyrophosphohydrolase RppH APJL_1940 9f9d8346aec389943b3a26f94923bc58 206 Gene3D G3DSA:3.90.79.10 1 160 6.9E-46 T 11-10-2018 APJL_1940 9f9d8346aec389943b3a26f94923bc58 206 Pfam PF00293 NUDIX domain 7 146 1.9E-26 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APJL_1940 9f9d8346aec389943b3a26f94923bc58 206 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 11-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 APJL_1940 9f9d8346aec389943b3a26f94923bc58 206 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.3E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APJL_1940 9f9d8346aec389943b3a26f94923bc58 206 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.3E-6 T 11-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 APJL_1940 9f9d8346aec389943b3a26f94923bc58 206 SUPERFAMILY SSF55811 3 158 1.76E-30 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_1756 47d45e1d0d3210be79ed9df2c0eba578 90 SUPERFAMILY SSF47413 6 65 2.62E-8 T 11-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 APJL_1756 47d45e1d0d3210be79ed9df2c0eba578 90 Gene3D G3DSA:1.10.260.40 5 74 9.5E-8 T 11-10-2018 APJL_0453 a946d2805a3c80db4dacea46e726d0b2 114 Gene3D G3DSA:3.30.1450.10 33 113 2.6E-27 T 11-10-2018 IPR037873 BamE-like APJL_0453 a946d2805a3c80db4dacea46e726d0b2 114 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 3 111 28.933 T 11-10-2018 IPR026592 Outer membrane protein assembly factor BamE APJL_0453 a946d2805a3c80db4dacea46e726d0b2 114 Pfam PF04355 SmpA / OmlA family 34 103 1.8E-27 T 11-10-2018 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 Pfam PF12800 4Fe-4S binding domain 134 152 0.04 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 Pfam PF12800 4Fe-4S binding domain 180 193 0.61 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 6 37 2.5E-4 T 11-10-2018 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 SUPERFAMILY SSF54862 57 202 6.28E-27 T 11-10-2018 APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 Gene3D G3DSA:3.30.70.20 52 129 9.1E-11 T 11-10-2018 APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 Gene3D G3DSA:3.30.70.20 133 214 1.0E-8 T 11-10-2018 APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 58 69 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 TIGRFAM TIGR00397 mauM_napG: MauM/NapG family ferredoxin-type protein 5 215 1.7E-79 T 11-10-2018 IPR004494 MauM/NapG ferredoxin-type protein APJL_1460 f49717c6b6a5f8b508960a7fc98f6d31 301 Pfam PF12838 4Fe-4S dicluster domain 57 112 2.0E-6 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_0818 5714b5380cecd92a8a40e1d7b7503986 870 Pfam PF04851 Type III restriction enzyme, res subunit 5 236 1.5E-17 T 11-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 APJL_0818 5714b5380cecd92a8a40e1d7b7503986 870 SUPERFAMILY SSF52540 4 265 1.48E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0818 5714b5380cecd92a8a40e1d7b7503986 870 Gene3D G3DSA:3.40.50.300 249 551 1.1E-8 T 11-10-2018 APJL_0818 5714b5380cecd92a8a40e1d7b7503986 870 Gene3D G3DSA:3.40.50.300 58 248 8.9E-13 T 11-10-2018 APJL_0818 5714b5380cecd92a8a40e1d7b7503986 870 SUPERFAMILY SSF52540 76 517 4.25E-9 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1001 ef5b187f27379792134e72241949640d 353 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 232 297 2.0E-6 T 11-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 APJL_1001 ef5b187f27379792134e72241949640d 353 Gene3D G3DSA:3.40.50.2000 31 165 2.8E-7 T 11-10-2018 APJL_1001 ef5b187f27379792134e72241949640d 353 Gene3D G3DSA:3.40.50.2000 176 339 6.8E-10 T 11-10-2018 APJL_1001 ef5b187f27379792134e72241949640d 353 SUPERFAMILY SSF53756 33 309 3.89E-34 T 11-10-2018 APJL_0508 ec9811dbb601635aa7e6e828d74496cd 113 Pfam PF17336 Family of unknown function (DUF5368) 1 110 7.0E-38 T 11-10-2018 IPR035308 Protein of unknown function DUF5368 APJL_0508 ec9811dbb601635aa7e6e828d74496cd 113 ProDom PD396235 MEMBRANE PM1478 TRANSMEMBRANE 41 110 0.001 T 11-10-2018 IPR035308 Protein of unknown function DUF5368 APJL_1244 9ec0dcb97a42f7a076afa2a5279b4a2a 799 PIRSF PIRSF000460 13 799 2.8E-197 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APJL_1244 9ec0dcb97a42f7a076afa2a5279b4a2a 799 SUPERFAMILY SSF53756 6 798 7.85E-276 T 11-10-2018 APJL_1244 9ec0dcb97a42f7a076afa2a5279b4a2a 799 Gene3D G3DSA:3.40.50.2000 458 784 0.0 T 11-10-2018 APJL_1244 9ec0dcb97a42f7a076afa2a5279b4a2a 799 Gene3D G3DSA:3.40.50.2000 60 798 0.0 T 11-10-2018 APJL_1244 9ec0dcb97a42f7a076afa2a5279b4a2a 799 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 644 656 - T 11-10-2018 IPR035090 Phosphorylase pyridoxal-phosphate attachment site KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APJL_1244 9ec0dcb97a42f7a076afa2a5279b4a2a 799 Pfam PF00343 Carbohydrate phosphorylase 93 798 1.5E-293 T 11-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APJL_1244 9ec0dcb97a42f7a076afa2a5279b4a2a 799 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 25 798 0.0 T 11-10-2018 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 APJL_1044 6e91b8601b1095fbece81630bb24de03 293 Gene3D G3DSA:3.90.550.10 1 244 1.9E-38 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1044 6e91b8601b1095fbece81630bb24de03 293 Pfam PF00535 Glycosyl transferase family 2 3 118 8.0E-27 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APJL_1044 6e91b8601b1095fbece81630bb24de03 293 SUPERFAMILY SSF53448 1 214 2.25E-42 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_2085 e22e6698137ebf7386f8b963f7451153 307 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 27 51 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APJL_2085 e22e6698137ebf7386f8b963f7451153 307 SUPERFAMILY SSF53613 1 305 1.71E-79 T 11-10-2018 IPR029056 Ribokinase-like APJL_2085 e22e6698137ebf7386f8b963f7451153 307 Gene3D G3DSA:3.40.1190.20 2 307 7.4E-90 T 11-10-2018 IPR029056 Ribokinase-like APJL_2085 e22e6698137ebf7386f8b963f7451153 307 Pfam PF00294 pfkB family carbohydrate kinase 1 297 1.1E-67 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APJL_2085 e22e6698137ebf7386f8b963f7451153 307 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 243 256 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APJL_2085 e22e6698137ebf7386f8b963f7451153 307 PRINTS PR00990 Ribokinase signature 22 41 4.3E-8 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APJL_2085 e22e6698137ebf7386f8b963f7451153 307 PRINTS PR00990 Ribokinase signature 214 225 4.3E-8 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APJL_2085 e22e6698137ebf7386f8b963f7451153 307 PRINTS PR00990 Ribokinase signature 174 189 4.3E-8 T 11-10-2018 IPR002139 Ribokinase/fructokinase GO:0016301 Reactome: R-HSA-71336 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 Gene3D G3DSA:3.90.780.10 358 546 2.3E-59 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 Pfam PF00149 Calcineurin-like phosphoesterase 29 250 6.4E-17 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 PRINTS PR01607 Apyrase family signature 278 298 1.5E-47 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 PRINTS PR01607 Apyrase family signature 202 219 1.5E-47 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 PRINTS PR01607 Apyrase family signature 233 256 1.5E-47 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 PRINTS PR01607 Apyrase family signature 481 500 1.5E-47 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 PRINTS PR01607 Apyrase family signature 27 45 1.5E-47 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 PRINTS PR01607 Apyrase family signature 412 435 1.5E-47 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 ProSitePatterns PS00786 5'-nucleotidase signature 2. 104 115 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 Gene3D G3DSA:3.60.21.10 21 357 2.4E-116 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APJL_0771 16bd1cde51659d1f407e17c298d60213 547 SUPERFAMILY SSF56300 22 355 3.8E-91 T 11-10-2018 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 SUPERFAMILY SSF55816 359 539 8.24E-51 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_0771 16bd1cde51659d1f407e17c298d60213 547 Pfam PF02872 5'-nucleotidase, C-terminal domain 359 507 2.1E-36 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1657 cf38ec1c2f4f6b6aef093d594ee9f80d 228 Pfam PF10670 Domain of unknown function (DUF4198) 19 196 7.8E-13 T 11-10-2018 IPR019613 Protein of unknown function DUF4198 APJL_1130 3a72452f09063d19cade58209df9d787 345 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 2 290 5.5E-93 T 11-10-2018 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 APJL_1130 3a72452f09063d19cade58209df9d787 345 Gene3D G3DSA:3.20.20.300 1 345 4.8E-120 T 11-10-2018 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily GO:0004553|GO:0005975 APJL_1130 3a72452f09063d19cade58209df9d787 345 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 1 335 47.574 T 11-10-2018 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|MetaCyc: PWY-7822|MetaCyc: PWY-7883 APJL_1130 3a72452f09063d19cade58209df9d787 345 SUPERFAMILY SSF51445 1 288 4.95E-83 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APJL_1130 3a72452f09063d19cade58209df9d787 345 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 233 250 - T 11-10-2018 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 APJL_1676 e2944fc45f0fcdc4640c2d523d385b86 123 Pfam PF02635 DsrE/DsrF-like family 5 123 1.1E-20 T 11-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein APJL_1676 e2944fc45f0fcdc4640c2d523d385b86 123 SUPERFAMILY SSF75169 5 123 1.15E-30 T 11-10-2018 IPR027396 DsrEFH-like APJL_1676 e2944fc45f0fcdc4640c2d523d385b86 123 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 5 123 2.8E-42 T 11-10-2018 IPR017462 Sulphur relay, TusC/DsrF APJL_1676 e2944fc45f0fcdc4640c2d523d385b86 123 Gene3D G3DSA:3.40.1260.10 2 123 7.4E-35 T 11-10-2018 IPR027396 DsrEFH-like APJL_0418 5d3e04502fb628169d100a98b8299175 563 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 544 9.8E-16 T 11-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain APJL_0418 5d3e04502fb628169d100a98b8299175 563 SUPERFAMILY SSF56801 21 556 3.01E-146 T 11-10-2018 APJL_0418 5d3e04502fb628169d100a98b8299175 563 Gene3D G3DSA:3.40.50.12780 13 457 2.9E-114 T 11-10-2018 APJL_0418 5d3e04502fb628169d100a98b8299175 563 Pfam PF00501 AMP-binding enzyme 29 461 1.1E-109 T 11-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 APJL_0418 5d3e04502fb628169d100a98b8299175 563 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 11-10-2018 IPR020845 AMP-binding, conserved site APJL_0418 5d3e04502fb628169d100a98b8299175 563 Gene3D G3DSA:3.30.300.310 458 558 1.3E-30 T 11-10-2018 APJL_1922 e62f031dc4702b70092c3e618023f366 852 SUPERFAMILY SSF56935 43 852 3.85E-47 T 11-10-2018 APJL_1922 e62f031dc4702b70092c3e618023f366 852 Gene3D G3DSA:2.170.130.10 42 193 4.8E-5 T 11-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily APJL_1922 e62f031dc4702b70092c3e618023f366 852 Pfam PF07715 TonB-dependent Receptor Plug Domain 68 192 1.5E-8 T 11-10-2018 IPR012910 TonB-dependent receptor, plug domain APJL_0271 3f87c194df420ca198c15c509ef7cef9 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 55 77 2.4E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_0271 3f87c194df420ca198c15c509ef7cef9 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 135 159 2.4E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_0271 3f87c194df420ca198c15c509ef7cef9 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 173 192 2.4E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_0271 3f87c194df420ca198c15c509ef7cef9 253 PRINTS PR00164 ABC-2 type transport system membrane protein signature 193 212 2.4E-9 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_0271 3f87c194df420ca198c15c509ef7cef9 253 Pfam PF01061 ABC-2 type transporter 6 215 7.3E-38 T 11-10-2018 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 APJL_0271 3f87c194df420ca198c15c509ef7cef9 253 PIRSF PIRSF006648 9 250 3.0E-31 T 11-10-2018 IPR000412 ABC-2 transporter GO:0016021|GO:0043190|GO:0055085 APJL_1404 930dd4081ed2d933acb03b4d670c5a41 56 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 1.1E-21 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1404 930dd4081ed2d933acb03b4d670c5a41 56 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 18.344 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1404 930dd4081ed2d933acb03b4d670c5a41 56 SUPERFAMILY SSF57829 2 55 9.77E-20 T 11-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 APJL_1404 930dd4081ed2d933acb03b4d670c5a41 56 Pfam PF01783 Ribosomal L32p protein family 2 56 4.5E-22 T 11-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1378 67852777392611adadccbe237aec7adb 189 Pfam PF04315 Elongation factor P hydroxylase 14 184 6.7E-72 T 11-10-2018 IPR007411 Elongation factor P hydroxylase APJL_1493 b1677a8fac1a1ab64c99d0394a11ee5e 436 Pfam PF02397 Bacterial sugar transferase 239 430 2.3E-62 T 11-10-2018 IPR003362 Bacterial sugar transferase APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 Gene3D G3DSA:3.40.50.300 264 513 9.8E-64 T 11-10-2018 APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 Pfam PF00005 ABC transporter 23 170 1.7E-29 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 Pfam PF00005 ABC transporter 288 432 3.7E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 SUPERFAMILY SSF52540 7 236 1.27E-59 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 Pfam PF12698 ABC-2 family transporter protein 566 905 1.9E-43 T 11-10-2018 APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 SUPERFAMILY SSF52540 271 491 1.22E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 SMART SM00382 297 488 1.7E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 SMART SM00382 32 220 1.2E-8 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0846 a0c3964d244ca6cbf67b3a57918e4464 913 Gene3D G3DSA:3.40.50.300 1 252 1.1E-62 T 11-10-2018 APJL_0931 dff461eceb2098f9af6ee54e30bfc125 418 Gene3D G3DSA:2.40.160.90 280 414 5.5E-7 T 11-10-2018 APJL_0569 8c8b652d37f3a9f644cf09e2dd1fe2f4 313 Gene3D G3DSA:1.25.40.10 36 307 1.1E-76 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0569 8c8b652d37f3a9f644cf09e2dd1fe2f4 313 SUPERFAMILY SSF48452 50 296 8.86E-61 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0569 8c8b652d37f3a9f644cf09e2dd1fe2f4 313 SMART SM00028 144 177 140.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_0569 8c8b652d37f3a9f644cf09e2dd1fe2f4 313 SMART SM00028 76 109 0.31 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_0569 8c8b652d37f3a9f644cf09e2dd1fe2f4 313 SMART SM00028 110 143 1.4E-5 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_0569 8c8b652d37f3a9f644cf09e2dd1fe2f4 313 SMART SM00028 249 282 27.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_0569 8c8b652d37f3a9f644cf09e2dd1fe2f4 313 PIRSF PIRSF004654 5 306 3.8E-106 T 11-10-2018 IPR023605 Lipoprotein NlpI APJL_0569 8c8b652d37f3a9f644cf09e2dd1fe2f4 313 Pfam PF07719 Tetratricopeptide repeat 111 143 5.2E-6 T 11-10-2018 IPR013105 Tetratricopeptide repeat 2 APJL_1541 6c93f05aa2359e3fb560e68b692fb10d 155 Gene3D G3DSA:1.10.8.640 18 104 1.8E-33 T 11-10-2018 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily APJL_1541 6c93f05aa2359e3fb560e68b692fb10d 155 Pfam PF03918 Cytochrome C biogenesis protein 8 150 8.9E-51 T 11-10-2018 IPR005616 CcmH/CycL/Ccl2/NrfF family APJL_2072 d8b0f63e607bfe14d96306917ed57d6d 97 SUPERFAMILY SSF143422 1 71 1.16E-18 T 11-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 APJL_2072 d8b0f63e607bfe14d96306917ed57d6d 97 Gene3D G3DSA:3.30.70.1290 1 94 1.6E-16 T 11-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 APJL_2072 d8b0f63e607bfe14d96306917ed57d6d 97 Pfam PF01797 Transposase IS200 like 1 69 1.8E-17 T 11-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 APJL_0407 f987711a1c3be27c33895563c275af6e 162 Gene3D G3DSA:1.10.287.180 2 77 5.8E-28 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 PIRSF PIRSF006092 1 158 2.5E-51 T 11-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 APJL_0407 f987711a1c3be27c33895563c275af6e 162 Gene3D G3DSA:3.10.50.30 78 159 3.2E-33 T 11-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 SUPERFAMILY SSF46557 4 79 8.5E-26 T 11-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 Pfam PF03449 Transcription elongation factor, N-terminal 5 75 1.6E-23 T 11-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 Hamap MF_00930 Transcription elongation factor GreB [greB]. 2 157 53.545 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 4 157 1.7E-72 T 11-10-2018 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 18 49 - T 11-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 Hamap MF_00105 Transcription elongation factor GreA [greA]. 3 155 29.066 T 11-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 APJL_0407 f987711a1c3be27c33895563c275af6e 162 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 2.2E-25 T 11-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 APJL_0407 f987711a1c3be27c33895563c275af6e 162 SUPERFAMILY SSF54534 81 156 1.57E-21 T 11-10-2018 APJL_1674 3076c83654b7958527c5bdb78f82d46f 219 Pfam PF13309 HTH domain 155 212 4.1E-20 T 11-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain APJL_1674 3076c83654b7958527c5bdb78f82d46f 219 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 11 117 3.0E-56 T 11-10-2018 IPR013559 YheO-like APJL_1674 3076c83654b7958527c5bdb78f82d46f 219 Pfam PF08348 YheO-like PAS domain 15 121 8.9E-35 T 11-10-2018 IPR013559 YheO-like APJL_1628 e5188cb8c688e3fe99506fb83d150cda 99 Gene3D G3DSA:3.30.70.260 14 99 1.5E-26 T 11-10-2018 APJL_1628 e5188cb8c688e3fe99506fb83d150cda 99 SUPERFAMILY SSF117991 15 99 6.02E-26 T 11-10-2018 IPR027471 YbeD-like domain superfamily APJL_1628 e5188cb8c688e3fe99506fb83d150cda 99 Pfam PF04359 Protein of unknown function (DUF493) 19 99 3.7E-25 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 APJL_1628 e5188cb8c688e3fe99506fb83d150cda 99 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 13 99 24.422 T 11-10-2018 IPR007454 Uncharacterised protein family UPF0250 APJL_0987 a94b99ae23d6f00b35d5820b7a5a1d29 125 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 120 3.0E-55 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 APJL_0987 a94b99ae23d6f00b35d5820b7a5a1d29 125 PIRSF PIRSF006287 1 124 7.5E-49 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 APJL_0987 a94b99ae23d6f00b35d5820b7a5a1d29 125 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 120 2.5E-43 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 APJL_0987 a94b99ae23d6f00b35d5820b7a5a1d29 125 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 123 28.222 T 11-10-2018 IPR008249 Uncharacterised protein family UPF0231 APJL_2035 c7912a45b4b2962a89b3b546220e1423 190 ProSitePatterns PS01218 TatC family signature. 96 115 - T 11-10-2018 IPR019820 Sec-independent periplasmic protein translocase, conserved site APJL_2035 c7912a45b4b2962a89b3b546220e1423 190 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 27 45 1.3E-37 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APJL_2035 c7912a45b4b2962a89b3b546220e1423 190 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 45 71 1.3E-37 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APJL_2035 c7912a45b4b2962a89b3b546220e1423 190 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 96 124 1.3E-37 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APJL_2035 c7912a45b4b2962a89b3b546220e1423 190 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 1 181 13.808 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APJL_2035 c7912a45b4b2962a89b3b546220e1423 190 Pfam PF00902 Sec-independent protein translocase protein (TatC) 1 163 2.1E-54 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APJL_2035 c7912a45b4b2962a89b3b546220e1423 190 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 1 168 1.9E-63 T 11-10-2018 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 APJL_0799 0039e407341316cb3e9be5e551895e1c 324 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 213 299 4.0E-22 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APJL_0799 0039e407341316cb3e9be5e551895e1c 324 SMART SM00382 11 221 1.3E-5 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0799 0039e407341316cb3e9be5e551895e1c 324 Pfam PF00005 ABC transporter 2 162 4.8E-26 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0799 0039e407341316cb3e9be5e551895e1c 324 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 214 281 1.2E-16 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APJL_0799 0039e407341316cb3e9be5e551895e1c 324 Gene3D G3DSA:3.40.50.300 1 313 1.5E-62 T 11-10-2018 APJL_0799 0039e407341316cb3e9be5e551895e1c 324 SUPERFAMILY SSF52540 2 234 7.69E-42 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0263 0f7921e5458960b06c8f37e565e47ddb 157 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 6 157 40.424 T 11-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 APJL_0263 0f7921e5458960b06c8f37e565e47ddb 157 Pfam PF00156 Phosphoribosyl transferase domain 17 150 6.7E-15 T 11-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 APJL_0263 0f7921e5458960b06c8f37e565e47ddb 157 SUPERFAMILY SSF53271 9 147 8.92E-30 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_0263 0f7921e5458960b06c8f37e565e47ddb 157 Gene3D G3DSA:3.40.50.2020 6 157 1.1E-41 T 11-10-2018 APJL_0377 9a697b9e30f671af17f098543067a376 151 SUPERFAMILY SSF51306 29 135 7.32E-15 T 11-10-2018 IPR036286 LexA/Signal peptidase-like superfamily APJL_0377 9a697b9e30f671af17f098543067a376 151 Gene3D G3DSA:2.10.109.10 17 139 6.1E-15 T 11-10-2018 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 SUPERFAMILY SSF55831 1 283 4.84E-89 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 Gene3D G3DSA:3.30.572.10 1 283 1.4E-75 T 11-10-2018 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 Hamap MF_00008 Thymidylate synthase [thyA]. 1 283 31.212 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 283 5.1E-41 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 ProSitePatterns PS00091 Thymidylate synthase active site. 140 168 - T 11-10-2018 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 PRINTS PR00108 Thymidylate synthase family signature 129 148 7.4E-12 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 PRINTS PR00108 Thymidylate synthase family signature 211 228 7.4E-12 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 PRINTS PR00108 Thymidylate synthase family signature 173 199 7.4E-12 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 PRINTS PR00108 Thymidylate synthase family signature 44 65 7.4E-12 T 11-10-2018 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_0116 6c10cf58d148f27620bcba2d3279a5c3 283 Pfam PF00303 Thymidylate synthase 2 283 4.0E-70 T 11-10-2018 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-499943|Reactome: R-HSA-539107 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 406 421 2.1E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 341 357 2.1E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 432 445 2.1E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 302 319 2.1E-34 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 SUPERFAMILY SSF51338 430 482 3.02E-5 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 ProSitePatterns PS01120 Urease nickel ligands signature. 134 147 - T 11-10-2018 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 5 572 1.2E-289 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 Hamap MF_01953 Urease subunit alpha [ureC]. 3 572 56.359 T 11-10-2018 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 Pfam PF00449 Urease alpha-subunit, N-terminal domain 5 125 8.9E-52 T 11-10-2018 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 Pfam PF01979 Amidohydrolase family 132 458 1.8E-81 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 ProSitePatterns PS00145 Urease active site. 324 340 - T 11-10-2018 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 SUPERFAMILY SSF51338 5 184 5.19E-55 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 Gene3D G3DSA:3.20.20.140 136 569 1.0E-288 T 11-10-2018 APJL_1649 44049a08c653c84eb5bed38310e1b881 572 SUPERFAMILY SSF51556 137 572 9.36E-196 T 11-10-2018 IPR032466 Metal-dependent hydrolase APJL_1649 44049a08c653c84eb5bed38310e1b881 572 Gene3D G3DSA:2.30.40.10 5 485 1.0E-288 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APJL_1606 19843bef184f9434cd5f25f8943b71f6 180 Pfam PF06821 Serine hydrolase 5 176 3.1E-23 T 11-10-2018 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 APJL_1606 19843bef184f9434cd5f25f8943b71f6 180 SUPERFAMILY SSF53474 2 175 2.65E-32 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1606 19843bef184f9434cd5f25f8943b71f6 180 Gene3D G3DSA:3.40.50.1820 1 180 2.9E-44 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1728 a1d985868932e03f077094bd2afdbf77 406 Pfam PF05159 Capsule polysaccharide biosynthesis protein 86 394 3.9E-110 T 11-10-2018 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 APJL_1207 e587ac03fcb66a620585811214adbfaa 150 SUPERFAMILY SSF54427 26 139 2.85E-25 T 11-10-2018 IPR032710 NTF2-like domain superfamily APJL_1207 e587ac03fcb66a620585811214adbfaa 150 Gene3D G3DSA:3.10.450.50 23 150 1.1E-36 T 11-10-2018 APJL_1207 e587ac03fcb66a620585811214adbfaa 150 Pfam PF07366 SnoaL-like polyketide cyclase 33 139 3.4E-13 T 11-10-2018 IPR009959 Polyketide cyclase SnoaL-like GO:0030638 MetaCyc: PWY-7352|MetaCyc: PWY-7354 APJL_1975 688bfa0c83da541a5fd0256cfcbb7e80 194 Pfam PF09335 SNARE associated Golgi protein 57 154 4.1E-13 T 11-10-2018 IPR032816 SNARE associated Golgi protein APJL_0763 50d0cd5eca0ee800c81f8e1e18a1f550 80 Pfam PF03889 Domain of unknown function 14 51 3.0E-21 T 11-10-2018 IPR005589 Alternative ribosome-rescue factor A GO:0072344 APJL_0221 47405d630b82466e5d9346439fa79109 224 Gene3D G3DSA:3.40.50.10610 68 224 1.3E-5 T 11-10-2018 APJL_0221 47405d630b82466e5d9346439fa79109 224 SUPERFAMILY SSF52964 64 145 1.44E-8 T 11-10-2018 APJL_0221 47405d630b82466e5d9346439fa79109 224 Pfam PF03783 Curli production assembly/transport component CsgG 44 220 2.4E-32 T 11-10-2018 IPR005534 Curli production assembly/transport component CsgG GO:0030288 APJL_2065 fd225e18705bcc30bf135b2e0ed15ec1 650 SUPERFAMILY SSF81345 12 320 1.83E-54 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_2065 fd225e18705bcc30bf135b2e0ed15ec1 650 Gene3D G3DSA:1.10.3470.10 330 650 1.8E-68 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_2065 fd225e18705bcc30bf135b2e0ed15ec1 650 Gene3D G3DSA:1.10.3470.10 4 323 7.0E-63 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_2065 fd225e18705bcc30bf135b2e0ed15ec1 650 Pfam PF01032 FecCD transport family 356 649 6.4E-72 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APJL_2065 fd225e18705bcc30bf135b2e0ed15ec1 650 Pfam PF01032 FecCD transport family 30 321 5.1E-68 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APJL_2065 fd225e18705bcc30bf135b2e0ed15ec1 650 SUPERFAMILY SSF81345 337 649 9.15E-63 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_1166 6e2a79688dc8f903a7c1c2253c730b1e 544 Pfam PF02646 RmuC family 213 508 2.0E-96 T 11-10-2018 IPR003798 DNA recombination RmuC APJL_1263 5dccf5e8123ed1ba9e60649de5e6c0a9 462 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 37 458 1.3E-99 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APJL_1263 5dccf5e8123ed1ba9e60649de5e6c0a9 462 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 408 424 - T 11-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 APJL_1263 5dccf5e8123ed1ba9e60649de5e6c0a9 462 Pfam PF00939 Sodium:sulfate symporter transmembrane region 31 459 2.5E-43 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APJL_0120 69bb3720600040ac10efeb43f12d3758 182 SMART SM00945 12 127 2.3E-55 T 11-10-2018 IPR016103 ProQ/FinO domain APJL_0120 69bb3720600040ac10efeb43f12d3758 182 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 182 23.389 T 11-10-2018 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 APJL_0120 69bb3720600040ac10efeb43f12d3758 182 Gene3D G3DSA:1.10.1710.10 1 117 2.3E-19 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily APJL_0120 69bb3720600040ac10efeb43f12d3758 182 SUPERFAMILY SSF48657 9 125 1.83E-35 T 11-10-2018 IPR036442 ProQ/FinO domain superfamily APJL_0120 69bb3720600040ac10efeb43f12d3758 182 Pfam PF04352 ProQ/FINO family 17 123 1.2E-35 T 11-10-2018 IPR016103 ProQ/FinO domain APJL_1761 827cac333f931b8104df5d9e019eef70 261 Gene3D G3DSA:1.25.40.10 1 122 2.0E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1915 e966669627bd78f291df28c08454d1ec 251 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 4 247 37.386 T 11-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 APJL_1915 e966669627bd78f291df28c08454d1ec 251 Gene3D G3DSA:3.40.50.150 56 250 3.6E-70 T 11-10-2018 APJL_1915 e966669627bd78f291df28c08454d1ec 251 SUPERFAMILY SSF53335 2 245 5.64E-72 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1915 e966669627bd78f291df28c08454d1ec 251 Pfam PF04445 Putative SAM-dependent methyltransferase 18 245 2.1E-105 T 11-10-2018 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 APJL_1915 e966669627bd78f291df28c08454d1ec 251 Gene3D G3DSA:3.40.1630.10 1 55 1.2E-14 T 11-10-2018 APJL_0950 1fd3bbe188ef43df45e1016ed42861ce 219 Pfam PF04301 Protein of unknown function (DUF452) 2 215 2.0E-79 T 11-10-2018 IPR007398 Protein of unknown function DUF452 APJL_0950 1fd3bbe188ef43df45e1016ed42861ce 219 SUPERFAMILY SSF53474 14 215 3.02E-5 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0155 080d69c761c4f5b00f2f4b0c412fb947 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 197 3.7E-104 T 11-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 APJL_0155 080d69c761c4f5b00f2f4b0c412fb947 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 2.3E-56 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 APJL_0155 080d69c761c4f5b00f2f4b0c412fb947 198 PIRSF PIRSF006102 1 198 3.0E-62 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 APJL_0155 080d69c761c4f5b00f2f4b0c412fb947 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 29.404 T 11-10-2018 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 APJL_0808 42b1da9549fbb62750bb6461b72f4d5c 158 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 11-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APJL_0808 42b1da9549fbb62750bb6461b72f4d5c 158 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 36.053 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APJL_0808 42b1da9549fbb62750bb6461b72f4d5c 158 Pfam PF02542 YgbB family 2 155 1.7E-66 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APJL_0808 42b1da9549fbb62750bb6461b72f4d5c 158 SUPERFAMILY SSF69765 1 157 1.83E-66 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APJL_0808 42b1da9549fbb62750bb6461b72f4d5c 158 Gene3D G3DSA:3.30.1330.50 1 158 1.8E-73 T 11-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APJL_0808 42b1da9549fbb62750bb6461b72f4d5c 158 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 157 1.3E-69 T 11-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 SUPERFAMILY SSF46689 182 232 1.53E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 SUPERFAMILY SSF46689 236 279 1.34E-9 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 Pfam PF06719 AraC-type transcriptional regulator N-terminus 19 170 1.5E-39 T 11-10-2018 IPR009594 Transcription regulator HTH, AraC, N-terminal APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 SMART SM00342 199 282 9.5E-27 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 236 278 - T 11-10-2018 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 266 282 3.9E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 266 3.9E-5 T 11-10-2018 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 Pfam PF12833 Helix-turn-helix domain 205 279 1.2E-20 T 11-10-2018 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 APJL_1209 20086adf22f5447d20cc5e81d427e34c 283 Gene3D G3DSA:1.10.10.60 178 282 2.6E-30 T 11-10-2018 APJL_1525 c55df623a7809a6485f993ccbc46a233 169 Pfam PF13518 Helix-turn-helix domain 65 118 2.2E-9 T 11-10-2018 APJL_1525 c55df623a7809a6485f993ccbc46a233 169 Pfam PF13518 Helix-turn-helix domain 8 53 9.6E-6 T 11-10-2018 APJL_1525 c55df623a7809a6485f993ccbc46a233 169 SUPERFAMILY SSF46689 57 161 6.09E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1525 c55df623a7809a6485f993ccbc46a233 169 SUPERFAMILY SSF46689 1 52 1.59E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1347 437adfcad66c546b2cf92e387b6f2621 138 Pfam PF02794 RTX toxin acyltransferase family 3 99 3.0E-31 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_1347 437adfcad66c546b2cf92e387b6f2621 138 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 46 68 1.4E-26 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_1347 437adfcad66c546b2cf92e387b6f2621 138 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 100 121 1.4E-26 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_1347 437adfcad66c546b2cf92e387b6f2621 138 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 24 42 1.4E-26 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 354 372 5.3E-82 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 445 461 5.3E-82 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 498 519 5.3E-82 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 552 576 5.3E-82 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 754 775 5.3E-82 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 410 430 5.3E-82 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR01488 Gram-negative bacterial RTX toxin determinant A family signature 288 309 5.3E-82 T 11-10-2018 IPR003995 RTX toxin determinant A GO:0005509|GO:0005576|GO:0009405 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Pfam PF02382 RTX N-terminal domain 27 668 1.2E-265 T 11-10-2018 IPR018504 RTX N-terminal GO:0005509|GO:0005576|GO:0009405 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 832 850 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR00313 NodO calcium binding signature 827 835 7.7E-11 T 11-10-2018 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR00313 NodO calcium binding signature 845 853 7.7E-11 T 11-10-2018 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR00313 NodO calcium binding signature 854 863 7.7E-11 T 11-10-2018 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 PRINTS PR00313 NodO calcium binding signature 787 798 7.7E-11 T 11-10-2018 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Gene3D G3DSA:2.150.10.10 734 778 2.5E-5 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Gene3D G3DSA:2.150.10.10 820 956 1.9E-24 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 781 797 0.0027 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 845 860 0.16 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 827 843 0.038 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 745 761 23.0 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 762 778 0.094 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 799 814 0.08 T 11-10-2018 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 Gene3D G3DSA:2.150.10.10 779 819 1.3E-8 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 841 859 - T 11-10-2018 IPR018511 Hemolysin-type calcium-binding conserved site APJL_1346 44f364bbe7469b31c5428c76203d6fb8 1052 SUPERFAMILY SSF51120 733 928 2.3E-32 T 11-10-2018 IPR011049 Serralysin-like metalloprotease, C-terminal APJL_1379 69fbcf8ca971e8c3ee1c039671de48ab 284 Gene3D G3DSA:3.30.950.10 116 236 3.6E-43 T 11-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 APJL_1379 69fbcf8ca971e8c3ee1c039671de48ab 284 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 8 229 37.591 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 APJL_1379 69fbcf8ca971e8c3ee1c039671de48ab 284 SUPERFAMILY SSF53790 7 227 3.93E-84 T 11-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 APJL_1379 69fbcf8ca971e8c3ee1c039671de48ab 284 Gene3D G3DSA:3.40.1010.10 1 115 5.0E-46 T 11-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 APJL_1379 69fbcf8ca971e8c3ee1c039671de48ab 284 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 86 97 - T 11-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 APJL_1379 69fbcf8ca971e8c3ee1c039671de48ab 284 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 8 207 4.1E-26 T 11-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 APJL_1379 69fbcf8ca971e8c3ee1c039671de48ab 284 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 9 279 1.5E-110 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 APJL_1379 69fbcf8ca971e8c3ee1c039671de48ab 284 PIRSF PIRSF005917 1 282 4.0E-106 T 11-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 SMART SM00830 8 88 8.9E-30 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 Gene3D G3DSA:3.40.50.720 80 247 3.1E-47 T 11-10-2018 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 Pfam PF01817 Chorismate mutase type II 8 82 2.5E-20 T 11-10-2018 IPR002701 Chorismate mutase II, prokaryotic-type GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 SUPERFAMILY SSF48600 3 88 1.12E-23 T 11-10-2018 IPR036263 Chorismate mutase type II superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 Pfam PF02153 Prephenate dehydrogenase 130 340 4.5E-28 T 11-10-2018 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 SUPERFAMILY SSF48179 241 367 1.05E-37 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 TIGRFAM TIGR01799 CM_T: chorismate mutase 4 86 2.7E-41 T 11-10-2018 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 Gene3D G3DSA:1.10.3660.10 248 373 7.4E-49 T 11-10-2018 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 SUPERFAMILY SSF51735 90 239 2.24E-41 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 Gene3D G3DSA:1.20.59.10 1 79 1.1E-17 T 11-10-2018 IPR036979 Chorismate mutase domain superfamily GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 APJL_0185 bcad7db8a3becf57dca924475f86f69f 373 PIRSF PIRSF001499 1 373 4.0E-169 T 11-10-2018 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 APJL_1984 c791f33087c25c4b43cf935561ab3011 44 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 1 40 4.0E-15 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1984 c791f33087c25c4b43cf935561ab3011 44 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 1 44 16.245 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1984 c791f33087c25c4b43cf935561ab3011 44 Pfam PF00468 Ribosomal protein L34 1 44 2.7E-25 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1984 c791f33087c25c4b43cf935561ab3011 44 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 1 44 6.8E-27 T 11-10-2018 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1984 c791f33087c25c4b43cf935561ab3011 44 ProSitePatterns PS00784 Ribosomal protein L34 signature. 2 21 - T 11-10-2018 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_1942 83f69745bbe739c9077fe6efeea6f5d9 255 Pfam PF01435 Peptidase family M48 54 241 1.4E-30 T 11-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 APJL_1942 83f69745bbe739c9077fe6efeea6f5d9 255 Gene3D G3DSA:3.30.2010.10 46 133 1.5E-5 T 11-10-2018 APJL_0213 47c3468b4a62cd393395ba7716abf72f 295 SUPERFAMILY SSF111331 11 291 1.57E-90 T 11-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily APJL_0213 47c3468b4a62cd393395ba7716abf72f 295 Hamap MF_00361 NAD kinase [nadK]. 9 290 34.551 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 APJL_0213 47c3468b4a62cd393395ba7716abf72f 295 Gene3D G3DSA:3.40.50.10330 28 290 5.3E-93 T 11-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 APJL_0213 47c3468b4a62cd393395ba7716abf72f 295 Pfam PF01513 ATP-NAD kinase 11 274 3.8E-73 T 11-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 APJL_0213 47c3468b4a62cd393395ba7716abf72f 295 Gene3D G3DSA:2.60.200.30 130 267 5.3E-93 T 11-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 APJL_0098 15243971f26f7aee2283cdfb6617880c 72 Pfam PF13710 ACT domain 12 69 1.6E-23 T 11-10-2018 APJL_0098 15243971f26f7aee2283cdfb6617880c 72 SUPERFAMILY SSF55021 3 69 1.97E-10 T 11-10-2018 APJL_0098 15243971f26f7aee2283cdfb6617880c 72 Gene3D G3DSA:3.30.70.260 1 72 4.8E-7 T 11-10-2018 APJL_0730 3d79ccffcc5f710def53099958737526 163 Pfam PF10369 Small subunit of acetolactate synthase 84 158 2.3E-25 T 11-10-2018 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APJL_0730 3d79ccffcc5f710def53099958737526 163 SUPERFAMILY SSF55021 79 160 5.65E-25 T 11-10-2018 APJL_0730 3d79ccffcc5f710def53099958737526 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 159 1.4E-67 T 11-10-2018 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 APJL_0730 3d79ccffcc5f710def53099958737526 163 SUPERFAMILY SSF55021 2 74 2.69E-22 T 11-10-2018 APJL_0730 3d79ccffcc5f710def53099958737526 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 76 3.0E-31 T 11-10-2018 APJL_0730 3d79ccffcc5f710def53099958737526 163 Gene3D G3DSA:3.30.70.260 1 78 1.2E-34 T 11-10-2018 APJL_0730 3d79ccffcc5f710def53099958737526 163 Gene3D G3DSA:3.30.70.1150 80 157 7.2E-27 T 11-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal APJL_0730 3d79ccffcc5f710def53099958737526 163 Pfam PF13710 ACT domain 12 73 2.6E-16 T 11-10-2018 APJL_0874 3cf16189ec593fb912d3c80961544bc3 54 Pfam PF03701 Uncharacterised protein family (UPF0181) 1 49 2.7E-25 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 APJL_0874 3cf16189ec593fb912d3c80961544bc3 54 ProDom PD026807 UPF0181 YOAH YPTB1650 VV20310 VPA0916 VCA0569 YPO1774/Y2534/YP1619 PLU2693 VVA0806 PM0480 1 46 1.0E-9 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 APJL_0874 3cf16189ec593fb912d3c80961544bc3 54 Hamap MF_00507 UPF0181 protein YoaH [yoaH]. 1 53 19.24 T 11-10-2018 IPR005371 Uncharacterised protein family UPF0181 APJL_0618 290faf62f32a786f5f441f49b380fa87 72 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 72 16.918 T 11-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 APJL_0618 290faf62f32a786f5f441f49b380fa87 72 Pfam PF06005 Cell division protein ZapB 1 71 7.6E-22 T 11-10-2018 IPR009252 Cell division protein ZapB GO:0005737|GO:0043093|GO:0090529 APJL_0618 290faf62f32a786f5f441f49b380fa87 72 Gene3D G3DSA:1.20.5.340 1 72 4.3E-22 T 11-10-2018 APJL_1865 bf618474960c937f526760e67e690a93 95 SUPERFAMILY SSF143120 4 49 2.22E-7 T 11-10-2018 IPR036165 YefM-like superfamily APJL_1865 bf618474960c937f526760e67e690a93 95 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 4 60 5.2E-6 T 11-10-2018 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM APJL_1111 f6b7bfd7770ce4af2abdd6c42b9565a3 222 PIRSF PIRSF006293 3 221 4.2E-73 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APJL_1111 f6b7bfd7770ce4af2abdd6c42b9565a3 222 SUPERFAMILY SSF52402 6 212 1.43E-58 T 11-10-2018 APJL_1111 f6b7bfd7770ce4af2abdd6c42b9565a3 222 Gene3D G3DSA:3.40.50.620 4 222 2.9E-67 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_1111 f6b7bfd7770ce4af2abdd6c42b9565a3 222 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 7 204 5.4E-77 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APJL_1111 f6b7bfd7770ce4af2abdd6c42b9565a3 222 Pfam PF06508 Queuosine biosynthesis protein QueC 6 211 4.9E-74 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APJL_1111 f6b7bfd7770ce4af2abdd6c42b9565a3 222 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 5 216 46.769 T 11-10-2018 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 PRINTS PR00166 Aromatic amino acid permease signature 126 146 5.9E-69 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 PRINTS PR00166 Aromatic amino acid permease signature 14 33 5.9E-69 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 PRINTS PR00166 Aromatic amino acid permease signature 160 182 5.9E-69 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 PRINTS PR00166 Aromatic amino acid permease signature 260 279 5.9E-69 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 PRINTS PR00166 Aromatic amino acid permease signature 199 218 5.9E-69 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 PRINTS PR00166 Aromatic amino acid permease signature 315 334 5.9E-69 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 PRINTS PR00166 Aromatic amino acid permease signature 60 80 5.9E-69 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 PRINTS PR00166 Aromatic amino acid permease signature 294 312 5.9E-69 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 Pfam PF03222 Tryptophan/tyrosine permease family 1 368 2.5E-114 T 11-10-2018 IPR018227 Amino acid/polyamine transporter 2 GO:0003333 APJL_0591 92d3270e97d9a818057ee952e38f7c2e 382 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 1 361 1.2E-119 T 11-10-2018 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 APJL_1979 e8bb36f800196b5db3e517da652edae4 187 Gene3D G3DSA:1.10.340.30 2 187 5.5E-84 T 11-10-2018 APJL_1979 e8bb36f800196b5db3e517da652edae4 187 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 3 182 9.6E-81 T 11-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 APJL_1979 e8bb36f800196b5db3e517da652edae4 187 Pfam PF03352 Methyladenine glycosylase 7 182 2.9E-76 T 11-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 APJL_1979 e8bb36f800196b5db3e517da652edae4 187 SUPERFAMILY SSF48150 3 183 1.84E-78 T 11-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 APJL_0911 31c5e540fb15102af98979638d8168f6 295 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 41 58 - T 11-10-2018 IPR020624 Schiff base-forming aldolase, conserved site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0911 31c5e540fb15102af98979638d8168f6 295 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 136 166 - T 11-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 APJL_0911 31c5e540fb15102af98979638d8168f6 295 Gene3D G3DSA:3.20.20.70 4 295 1.1E-105 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0911 31c5e540fb15102af98979638d8168f6 295 SMART SM01130 5 293 1.2E-135 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_0911 31c5e540fb15102af98979638d8168f6 295 PIRSF PIRSF001365 1 295 3.7E-92 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_0911 31c5e540fb15102af98979638d8168f6 295 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 5 291 63.197 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0911 31c5e540fb15102af98979638d8168f6 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 6.0E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_0911 31c5e540fb15102af98979638d8168f6 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 6.0E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_0911 31c5e540fb15102af98979638d8168f6 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 38 59 6.0E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_0911 31c5e540fb15102af98979638d8168f6 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 6.0E-34 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_0911 31c5e540fb15102af98979638d8168f6 295 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 8 291 7.2E-115 T 11-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 APJL_0911 31c5e540fb15102af98979638d8168f6 295 Pfam PF00701 Dihydrodipicolinate synthetase family 6 291 4.2E-112 T 11-10-2018 IPR002220 DapA-like GO:0016829 APJL_0911 31c5e540fb15102af98979638d8168f6 295 SUPERFAMILY SSF51569 5 293 3.14E-96 T 11-10-2018 APJL_1334 7cdde8e6db8c95b3830ebf8ec0ce2294 214 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 5 208 2.2E-91 T 11-10-2018 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0016021|GO:0042626|GO:0071934 APJL_1334 7cdde8e6db8c95b3830ebf8ec0ce2294 214 Gene3D G3DSA:3.40.50.300 3 212 1.6E-62 T 11-10-2018 APJL_1334 7cdde8e6db8c95b3830ebf8ec0ce2294 214 SUPERFAMILY SSF52540 5 209 5.0E-60 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1334 7cdde8e6db8c95b3830ebf8ec0ce2294 214 SMART SM00382 23 206 1.8E-18 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_1334 7cdde8e6db8c95b3830ebf8ec0ce2294 214 Pfam PF00005 ABC transporter 19 156 1.2E-38 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1334 7cdde8e6db8c95b3830ebf8ec0ce2294 214 ProSitePatterns PS00211 ABC transporters family signature. 129 143 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1303 9bd3b51a6068eace35c16d3a082c3dc6 175 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 5 152 3.0E-55 T 11-10-2018 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 APJL_1303 9bd3b51a6068eace35c16d3a082c3dc6 175 Pfam PF02470 MlaD protein 40 117 2.7E-20 T 11-10-2018 IPR003399 Mce/MlaD APJL_1777 b3655e7d457e0247aaf9f0d1d9a6a1c2 365 Gene3D G3DSA:1.10.530.10 183 360 5.0E-50 T 11-10-2018 APJL_1777 b3655e7d457e0247aaf9f0d1d9a6a1c2 365 Pfam PF11873 Domain of unknown function (DUF3393) 6 195 7.2E-68 T 11-10-2018 IPR024570 Murein transglycosylase-C, N-terminal APJL_1777 b3655e7d457e0247aaf9f0d1d9a6a1c2 365 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 218 246 - T 11-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 APJL_1777 b3655e7d457e0247aaf9f0d1d9a6a1c2 365 SUPERFAMILY SSF53955 171 359 5.93E-37 T 11-10-2018 IPR023346 Lysozyme-like domain superfamily APJL_1777 b3655e7d457e0247aaf9f0d1d9a6a1c2 365 Hamap MF_01616 Membrane-bound lytic murein transglycosylase C [mltC]. 4 363 64.773 T 11-10-2018 IPR023664 Murein transglycosylase-C GO:0009279|GO:0016798|GO:0016998 APJL_1777 b3655e7d457e0247aaf9f0d1d9a6a1c2 365 Pfam PF01464 Transglycosylase SLT domain 201 322 9.3E-29 T 11-10-2018 IPR008258 Transglycosylase SLT domain 1 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 Gene3D G3DSA:1.10.10.1800 459 550 5.9E-34 T 11-10-2018 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 6.5E-293 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 SMART SM01228 546 617 2.9E-44 T 11-10-2018 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 SUPERFAMILY SSF51905 7 261 2.82E-52 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 11-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 Pfam PF13932 GidA associated domain 402 616 1.8E-76 T 11-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 Gene3D G3DSA:1.10.150.570 570 621 1.2E-23 T 11-10-2018 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 Pfam PF01134 Glucose inhibited division protein A 8 399 2.1E-164 T 11-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 Gene3D G3DSA:3.50.50.60 2 234 4.0E-87 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 Gene3D G3DSA:3.50.50.60 306 458 1.2E-56 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1688 27d80d2b79ba7076034fd1cfe53518c6 630 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.064 T 11-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 APJL_0166 8efe25803120d2effbaa9df4987c3b09 193 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 2 191 25.817 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 APJL_0166 8efe25803120d2effbaa9df4987c3b09 193 PIRSF PIRSF006102 1 193 2.0E-62 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 APJL_0166 8efe25803120d2effbaa9df4987c3b09 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 6.7E-87 T 11-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 APJL_0166 8efe25803120d2effbaa9df4987c3b09 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 6.3E-60 T 11-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 APJL_1668 58e25272f3f4f8115100c524411168d3 620 Gene3D G3DSA:3.40.50.2000 408 590 7.2E-145 T 11-10-2018 APJL_1668 58e25272f3f4f8115100c524411168d3 620 Gene3D G3DSA:3.40.50.11380 266 407 7.2E-145 T 11-10-2018 APJL_0416 b64370d684b881d6537398efa5b9a853 207 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 126 176 3.3E-15 T 11-10-2018 IPR005573 Anti sigma-E protein RseA, C-terminal APJL_0416 b64370d684b881d6537398efa5b9a853 207 Gene3D G3DSA:1.10.10.880 2 66 6.7E-18 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 APJL_0416 b64370d684b881d6537398efa5b9a853 207 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 82 2.9E-20 T 11-10-2018 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 APJL_0416 b64370d684b881d6537398efa5b9a853 207 PIRSF PIRSF016938 1 199 6.8E-59 T 11-10-2018 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0016989 APJL_0416 b64370d684b881d6537398efa5b9a853 207 SUPERFAMILY SSF89069 3 66 5.1E-17 T 11-10-2018 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily GO:0016989 APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 PRINTS PR01806 Virulence factor MviN signature 152 173 2.7E-72 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 PRINTS PR01806 Virulence factor MviN signature 254 280 2.7E-72 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 PRINTS PR01806 Virulence factor MviN signature 40 56 2.7E-72 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 PRINTS PR01806 Virulence factor MviN signature 358 377 2.7E-72 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 PRINTS PR01806 Virulence factor MviN signature 409 426 2.7E-72 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 PRINTS PR01806 Virulence factor MviN signature 128 152 2.7E-72 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 PRINTS PR01806 Virulence factor MviN signature 21 40 2.7E-72 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 PIRSF PIRSF002869 1 509 1.6E-138 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 Pfam PF03023 MviN-like protein 16 471 4.5E-145 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 1 503 3.2E-124 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1585 db4ea448ca96c032f52a9084b29e7372 509 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 1 467 18.121 T 11-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ APJL_1288 f3f8175542abfd1d285183c871b95a04 86 Pfam PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system 5 84 6.7E-40 T 11-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 APJL_1288 f3f8175542abfd1d285183c871b95a04 86 Gene3D G3DSA:3.30.2310.20 1 84 1.1E-40 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily APJL_1288 f3f8175542abfd1d285183c871b95a04 86 TIGRFAM TIGR02116 toxin_Txe_YoeB: addiction module toxin, Txe/YoeB family 5 84 4.0E-37 T 11-10-2018 IPR009614 Toxin YoeB GO:0004519|GO:0006401 APJL_1288 f3f8175542abfd1d285183c871b95a04 86 SUPERFAMILY SSF143011 1 83 7.06E-31 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 154 5.5E-59 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 7.3E-49 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 7.3E-49 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 122 141 7.3E-49 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 7.3E-49 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 7.3E-49 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 PIRSF PIRSF006160 1 163 4.8E-65 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 8 155 4.0E-67 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 SUPERFAMILY SSF63411 4 163 1.65E-64 T 11-10-2018 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 160 36.015 T 11-10-2018 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1229 5afb2afeadbf0545292c23bed37c1c18 169 Gene3D G3DSA:3.30.1360.80 1 169 4.9E-67 T 11-10-2018 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_0627 3a95a2a1d37a6663a054ed61a2576818 434 TIGRFAM TIGR01499 folC: bifunctional protein FolC 33 431 2.6E-96 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 APJL_0627 3a95a2a1d37a6663a054ed61a2576818 434 PIRSF PIRSF001563 8 434 4.7E-109 T 11-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 APJL_0627 3a95a2a1d37a6663a054ed61a2576818 434 Gene3D G3DSA:3.40.1190.10 2 287 4.0E-89 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_0627 3a95a2a1d37a6663a054ed61a2576818 434 Pfam PF08245 Mur ligase middle domain 55 243 1.1E-13 T 11-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 APJL_0627 3a95a2a1d37a6663a054ed61a2576818 434 SUPERFAMILY SSF53244 307 432 1.83E-23 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0627 3a95a2a1d37a6663a054ed61a2576818 434 Gene3D G3DSA:3.90.190.20 289 432 1.1E-21 T 11-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 APJL_0627 3a95a2a1d37a6663a054ed61a2576818 434 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 11-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 APJL_0627 3a95a2a1d37a6663a054ed61a2576818 434 SUPERFAMILY SSF53623 16 285 2.88E-87 T 11-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 APJL_1230 f4e7357ffa7a38275a20112e4c18d6e1 842 Pfam PF02470 MlaD protein 118 173 2.8E-7 T 11-10-2018 IPR003399 Mce/MlaD APJL_1230 f4e7357ffa7a38275a20112e4c18d6e1 842 Pfam PF02470 MlaD protein 715 772 6.2E-10 T 11-10-2018 IPR003399 Mce/MlaD APJL_1230 f4e7357ffa7a38275a20112e4c18d6e1 842 Pfam PF02470 MlaD protein 2 90 2.6E-12 T 11-10-2018 IPR003399 Mce/MlaD APJL_1230 f4e7357ffa7a38275a20112e4c18d6e1 842 Pfam PF02470 MlaD protein 600 688 6.9E-10 T 11-10-2018 IPR003399 Mce/MlaD APJL_0138 d0741b163abef023d116e6fca8c06da1 168 Pfam PF10063 Uncharacterized integral membrane protein (DUF2301) 85 167 1.4E-8 T 11-10-2018 IPR019275 Protein of unknown function DUF2301 APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 Pfam PF01580 FtsK/SpoIIIE family 561 773 8.2E-69 T 11-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 SUPERFAMILY SSF46785 876 937 7.56E-19 T 11-10-2018 IPR036390 Winged helix DNA-binding domain superfamily APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 Gene3D G3DSA:1.10.10.10 879 938 6.6E-26 T 11-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 Gene3D G3DSA:3.40.50.300 558 860 2.5E-118 T 11-10-2018 APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 Gene3D G3DSA:3.30.980.40 453 557 1.4E-30 T 11-10-2018 APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 2 164 4.3E-19 T 11-10-2018 IPR025199 DNA translocase FtsK, 4TM region APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 SMART SM00843 875 938 4.4E-29 T 11-10-2018 IPR018541 FtsK gamma domain APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 ProDom PD414759 MEMBRANE CELL TRANSLOCASE DNA TRANSMEMBRANE FTSK DNA-BINDING NUCLEOTIDE-BINDING ATP-BINDING INNER 97 298 7.0E-35 T 11-10-2018 APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 Pfam PF09397 Ftsk gamma domain 877 937 4.6E-25 T 11-10-2018 IPR018541 FtsK gamma domain APJL_0613 46c17b2db0b53bd3b0432d6bf78f78c0 938 SUPERFAMILY SSF52540 533 846 2.12E-46 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1623 ce03d12696a88c344d708be0432a2636 492 Pfam PF02386 Cation transport protein 38 484 1.0E-85 T 11-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 APJL_1623 ce03d12696a88c344d708be0432a2636 492 PIRSF PIRSF006247 1 492 3.2E-162 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 APJL_1623 ce03d12696a88c344d708be0432a2636 492 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 83 475 3.6E-110 T 11-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 APJL_0663 857362ca63ccc165edcebb6daefb4df8 270 Gene3D G3DSA:1.20.1420.20 20 270 9.2E-90 T 11-10-2018 IPR038352 Imelysin-like domain superfamily APJL_0663 857362ca63ccc165edcebb6daefb4df8 270 Pfam PF09375 Imelysin 29 264 1.5E-37 T 11-10-2018 IPR018976 Imelysin-like domain APJL_0253 493ed7787bb834f975381376cb1d7823 420 Gene3D G3DSA:3.40.50.300 131 418 9.4E-130 T 11-10-2018 APJL_0253 493ed7787bb834f975381376cb1d7823 420 SMART SM00382 171 356 8.3E-9 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0253 493ed7787bb834f975381376cb1d7823 420 Pfam PF07498 Rho termination factor, N-terminal domain 5 48 2.6E-16 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 APJL_0253 493ed7787bb834f975381376cb1d7823 420 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 161 364 2.1E-22 T 11-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 APJL_0253 493ed7787bb834f975381376cb1d7823 420 Gene3D G3DSA:1.10.720.10 1 48 3.0E-21 T 11-10-2018 APJL_0253 493ed7787bb834f975381376cb1d7823 420 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 420 240.683 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 APJL_0253 493ed7787bb834f975381376cb1d7823 420 Gene3D G3DSA:2.40.50.140 49 118 1.2E-34 T 11-10-2018 APJL_0253 493ed7787bb834f975381376cb1d7823 420 SUPERFAMILY SSF50249 49 126 5.57E-29 T 11-10-2018 IPR012340 Nucleic acid-binding, OB-fold APJL_0253 493ed7787bb834f975381376cb1d7823 420 SUPERFAMILY SSF68912 1 47 1.14E-8 T 11-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily APJL_0253 493ed7787bb834f975381376cb1d7823 420 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 418 3.4E-216 T 11-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 APJL_0253 493ed7787bb834f975381376cb1d7823 420 SMART SM00357 53 119 4.3E-22 T 11-10-2018 IPR011129 Cold shock domain GO:0003676 APJL_0253 493ed7787bb834f975381376cb1d7823 420 Pfam PF07497 Rho termination factor, RNA-binding domain 53 126 7.2E-32 T 11-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 APJL_0253 493ed7787bb834f975381376cb1d7823 420 SMART SM00959 5 48 3.1E-14 T 11-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 APJL_0253 493ed7787bb834f975381376cb1d7823 420 SUPERFAMILY SSF52540 91 372 2.1E-67 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1089 f41b871738e3b147b9110dda965d60f2 180 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 57 106 1.1E-12 T 11-10-2018 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APJL_1089 f41b871738e3b147b9110dda965d60f2 180 Gene3D G3DSA:1.20.1290.10 13 180 3.3E-38 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APJL_1089 f41b871738e3b147b9110dda965d60f2 180 SUPERFAMILY SSF69118 1 179 3.8E-42 T 11-10-2018 IPR029032 AhpD-like Reactome: R-HSA-5628897 APJL_1089 f41b871738e3b147b9110dda965d60f2 180 Pfam PF02627 Carboxymuconolactone decarboxylase family 53 106 8.7E-11 T 11-10-2018 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 APJL_1064 5cc57d59b14deaeba3d39f6af171ede5 205 Pfam PF01810 LysE type translocator 16 203 6.8E-33 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APJL_1064 5cc57d59b14deaeba3d39f6af171ede5 205 PIRSF PIRSF006324 1 205 9.1E-53 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APJL_0449 8403e02e415d2e1a8667fafcfb1c8eb8 167 Pfam PF02674 Colicin V production protein 2 146 7.5E-39 T 11-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 APJL_0951 f09beec74490f31421057ae40a011d69 387 Gene3D G3DSA:3.40.640.10 53 292 3.4E-119 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0951 f09beec74490f31421057ae40a011d69 387 Pfam PF00155 Aminotransferase class I and II 36 385 5.2E-61 T 11-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 APJL_0951 f09beec74490f31421057ae40a011d69 387 Gene3D G3DSA:3.90.1150.10 37 384 3.4E-119 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0951 f09beec74490f31421057ae40a011d69 387 SUPERFAMILY SSF53383 10 387 5.69E-93 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0951 f09beec74490f31421057ae40a011d69 387 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 242 251 - T 11-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 APJL_0502 2074a24955903c56c7a16eada55d2c0b 97 SUPERFAMILY SSF143011 1 88 2.75E-8 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily APJL_0502 2074a24955903c56c7a16eada55d2c0b 97 Gene3D G3DSA:3.30.2310.20 2 94 5.1E-13 T 11-10-2018 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily APJL_0502 2074a24955903c56c7a16eada55d2c0b 97 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 93 3.9E-10 T 11-10-2018 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family APJL_1780 8103886387173f62fa7a56c1109acbe2 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 7.7E-20 T 11-10-2018 APJL_1780 8103886387173f62fa7a56c1109acbe2 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 7.7E-20 T 11-10-2018 APJL_1780 8103886387173f62fa7a56c1109acbe2 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 277 292 7.7E-20 T 11-10-2018 APJL_1780 8103886387173f62fa7a56c1109acbe2 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 308 7.7E-20 T 11-10-2018 APJL_1780 8103886387173f62fa7a56c1109acbe2 388 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 5 387 7.3E-123 T 11-10-2018 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 APJL_1780 8103886387173f62fa7a56c1109acbe2 388 SUPERFAMILY SSF51905 5 380 3.48E-57 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1780 8103886387173f62fa7a56c1109acbe2 388 Gene3D G3DSA:3.50.50.60 5 335 8.7E-102 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_1780 8103886387173f62fa7a56c1109acbe2 388 Gene3D G3DSA:3.30.9.50 80 266 8.7E-102 T 11-10-2018 APJL_1780 8103886387173f62fa7a56c1109acbe2 388 Pfam PF01266 FAD dependent oxidoreductase 5 40 2.0E-7 T 11-10-2018 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 APJL_1780 8103886387173f62fa7a56c1109acbe2 388 Pfam PF01494 FAD binding domain 149 337 1.6E-22 T 11-10-2018 IPR002938 FAD-binding domain GO:0071949 APJL_1542 4ea031f96973c1701e8510540fcf1472 304 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 3 117 5.7E-31 T 11-10-2018 IPR017560 Cytochrome c-type biogenesis protein CcmI APJL_1542 4ea031f96973c1701e8510540fcf1472 304 SUPERFAMILY SSF48452 164 270 9.01E-20 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1542 4ea031f96973c1701e8510540fcf1472 304 Gene3D G3DSA:1.25.40.10 207 289 4.4E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1542 4ea031f96973c1701e8510540fcf1472 304 Gene3D G3DSA:1.25.40.10 37 206 1.2E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1737 50d254c6601b4989cbf67731e4cf57b6 201 Gene3D G3DSA:3.10.50.40 71 177 5.9E-20 T 11-10-2018 APJL_1737 50d254c6601b4989cbf67731e4cf57b6 201 SUPERFAMILY SSF54534 16 147 9.43E-27 T 11-10-2018 APJL_1737 50d254c6601b4989cbf67731e4cf57b6 201 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 6 111 3.0E-23 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 APJL_1737 50d254c6601b4989cbf67731e4cf57b6 201 Gene3D G3DSA:1.10.287.460 9 70 8.5E-15 T 11-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 APJL_0671 0d1210064629893319d9e263090ecc66 333 Pfam PF13394 4Fe-4S single cluster domain 110 192 1.2E-5 T 11-10-2018 APJL_0671 0d1210064629893319d9e263090ecc66 333 PIRSF PIRSF004911 2 333 8.2E-116 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase APJL_0671 0d1210064629893319d9e263090ecc66 333 TIGRFAM TIGR00238 TIGR00238: KamA family protein 11 324 1.5E-121 T 11-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase APJL_0671 0d1210064629893319d9e263090ecc66 333 Gene3D G3DSA:3.20.20.70 48 330 8.9E-89 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0671 0d1210064629893319d9e263090ecc66 333 Pfam PF04055 Radical SAM superfamily 116 227 1.7E-7 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_0671 0d1210064629893319d9e263090ecc66 333 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 13 331 4.1E-144 T 11-10-2018 IPR022462 Lysine-2,3-aminomutase-like APJL_0671 0d1210064629893319d9e263090ecc66 333 SUPERFAMILY SSF102114 98 321 4.84E-27 T 11-10-2018 APJL_1119 f8c30f9f3a5d505d815b81dfcac4f39b 360 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 8 357 1.7E-129 T 11-10-2018 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 APJL_1119 f8c30f9f3a5d505d815b81dfcac4f39b 360 Pfam PF03739 Predicted permease YjgP/YjgQ family 11 356 3.2E-69 T 11-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 APJL_0320 6cf8bf146b2879ed68070a577694fdb1 320 Gene3D G3DSA:1.20.225.30 248 318 1.5E-21 T 11-10-2018 APJL_0320 6cf8bf146b2879ed68070a577694fdb1 320 Pfam PF01207 Dihydrouridine synthase (Dus) 9 291 5.0E-83 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0320 6cf8bf146b2879ed68070a577694fdb1 320 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 13 315 50.586 T 11-10-2018 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 APJL_0320 6cf8bf146b2879ed68070a577694fdb1 320 Gene3D G3DSA:3.20.20.70 5 247 3.1E-78 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0320 6cf8bf146b2879ed68070a577694fdb1 320 PIRSF PIRSF006621 2 319 3.2E-75 T 11-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0320 6cf8bf146b2879ed68070a577694fdb1 320 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 97 115 - T 11-10-2018 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 APJL_0320 6cf8bf146b2879ed68070a577694fdb1 320 SUPERFAMILY SSF51395 6 316 2.38E-71 T 11-10-2018 APJL_0971 48e12f956459f0305d77aed5f4251374 529 SMART SM00798 133 461 2.0E-217 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_0971 48e12f956459f0305d77aed5f4251374 529 PIRSF PIRSF000414 1 529 6.4E-229 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_0971 48e12f956459f0305d77aed5f4251374 529 Pfam PF01808 AICARFT/IMPCHase bienzyme 133 460 8.4E-121 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_0971 48e12f956459f0305d77aed5f4251374 529 Pfam PF02142 MGS-like domain 15 128 1.1E-29 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain APJL_0971 48e12f956459f0305d77aed5f4251374 529 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 3 529 45.466 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_0971 48e12f956459f0305d77aed5f4251374 529 SUPERFAMILY SSF52335 4 193 9.94E-72 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APJL_0971 48e12f956459f0305d77aed5f4251374 529 Gene3D G3DSA:3.40.140.20 219 375 1.8E-58 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_0971 48e12f956459f0305d77aed5f4251374 529 SMART SM00851 15 128 1.6E-61 T 11-10-2018 IPR011607 Methylglyoxal synthase-like domain APJL_0971 48e12f956459f0305d77aed5f4251374 529 Gene3D G3DSA:3.40.50.1380 1 193 9.6E-88 T 11-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily APJL_0971 48e12f956459f0305d77aed5f4251374 529 SUPERFAMILY SSF53927 221 529 8.02E-131 T 11-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 APJL_0971 48e12f956459f0305d77aed5f4251374 529 Gene3D G3DSA:3.40.140.20 392 529 4.7E-61 T 11-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_0971 48e12f956459f0305d77aed5f4251374 529 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 5 529 2.6E-261 T 11-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 APJL_1186 af9b23707c0a9f6a61fc0d87429ebc64 251 SUPERFAMILY SSF53335 13 249 3.92E-35 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_1186 af9b23707c0a9f6a61fc0d87429ebc64 251 Gene3D G3DSA:3.40.50.150 27 251 1.6E-50 T 11-10-2018 APJL_1186 af9b23707c0a9f6a61fc0d87429ebc64 251 Pfam PF08241 Methyltransferase domain 47 146 2.3E-16 T 11-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 412 1.7E-75 T 11-10-2018 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0016021|GO:0022857|GO:0055085 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 Gene3D G3DSA:1.20.1250.20 260 454 4.0E-17 T 11-10-2018 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 SUPERFAMILY SSF103473 9 450 1.16E-60 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 394 413 3.9E-10 T 11-10-2018 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 352 372 3.9E-10 T 11-10-2018 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 12 36 3.9E-10 T 11-10-2018 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 103 123 3.9E-10 T 11-10-2018 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 PRINTS PR01036 Tetracycline resistance protein TetB signature 261 286 3.9E-10 T 11-10-2018 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 Gene3D G3DSA:1.20.1720.10 9 246 6.1E-43 T 11-10-2018 APJL_0676 40cfb0f5ffb1b00978cc77eb3a5741f9 463 Pfam PF07690 Major Facilitator Superfamily 14 403 9.2E-45 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PIRSF PIRSF004557 7 437 2.7E-123 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 Gene3D G3DSA:1.10.3370.10 12 426 7.0E-157 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 SUPERFAMILY SSF103491 14 421 1.83E-130 T 11-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 Pfam PF00344 SecY translocase 75 413 1.3E-113 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 ProSitePatterns PS00756 Protein secY signature 2. 170 187 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 ProSitePatterns PS00755 Protein secY signature 1. 75 94 - T 11-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 177 200 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 74 94 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 115 138 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 399 417 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 367 385 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 22 40 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 312 334 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 151 176 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 269 288 1.6E-96 T 11-10-2018 APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 430 28.743 T 11-10-2018 IPR026593 Protein translocase subunit SecY APJL_1815 6ed2f1474ab286fc87ce876efc60710f 440 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 19 426 2.6E-135 T 11-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 APJL_0384 ab022b55fbe71a23f7738208775200cb 150 Hamap MF_01874 UPF0756 membrane protein YeaL [yeaL]. 6 150 18.911 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame APJL_0384 ab022b55fbe71a23f7738208775200cb 150 Pfam PF04284 Protein of unknown function (DUF441) 10 147 2.3E-45 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame APJL_0384 ab022b55fbe71a23f7738208775200cb 150 ProDom PD021096 MEMBRANE YEAL PRECURSOR SIGNAL PROTEIN TRANSMEMBRANE YTWI HI1074 INTEGRAL SPANNING 23 122 4.0E-29 T 11-10-2018 IPR007382 Uncharacterised protein family UPF0756, transmembrame APJL_2097 eb162c8a18f3ead4930b4c3c1b6f3c7a 330 Pfam PF04143 Sulphur transport 18 316 2.7E-85 T 11-10-2018 IPR007272 Sulphur transport domain APJL_1627 2286b42bbeb760827516b6d02145a735 230 SUPERFAMILY SSF55681 2 211 3.73E-66 T 11-10-2018 APJL_1627 2286b42bbeb760827516b6d02145a735 230 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 69 84 - T 11-10-2018 IPR020605 Octanoyltransferase, conserved site GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 APJL_1627 2286b42bbeb760827516b6d02145a735 230 Hamap MF_00013 Octanoyltransferase [lipB]. 3 211 37.284 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APJL_1627 2286b42bbeb760827516b6d02145a735 230 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 25 209 5.3E-72 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APJL_1627 2286b42bbeb760827516b6d02145a735 230 PIRSF PIRSF016262 1 222 6.6E-59 T 11-10-2018 IPR000544 Octanoyltransferase GO:0009249|GO:0033819 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APJL_1627 2286b42bbeb760827516b6d02145a735 230 Gene3D G3DSA:3.30.930.10 1 208 2.0E-60 T 11-10-2018 APJL_1627 2286b42bbeb760827516b6d02145a735 230 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 73 131 1.0E-25 T 11-10-2018 APJL_1627 2286b42bbeb760827516b6d02145a735 230 Pfam PF03099 Biotin/lipoate A/B protein ligase family 56 162 5.7E-7 T 11-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 APJL_1678 897276d7aead41bae2420b2d10c78cb5 139 SUPERFAMILY SSF46604 88 131 1.44E-7 T 11-10-2018 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1678 897276d7aead41bae2420b2d10c78cb5 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 129 1.5E-37 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1678 897276d7aead41bae2420b2d10c78cb5 139 SUPERFAMILY SSF51344 4 86 1.09E-25 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1678 897276d7aead41bae2420b2d10c78cb5 139 Gene3D G3DSA:2.60.15.10 1 133 1.1E-35 T 11-10-2018 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1678 897276d7aead41bae2420b2d10c78cb5 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 84 3.6E-29 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1678 897276d7aead41bae2420b2d10c78cb5 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 127 19.7 T 11-10-2018 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1678 897276d7aead41bae2420b2d10c78cb5 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 90 2.0E-37 T 11-10-2018 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986 Reactome: R-HSA-163210|Reactome: R-HSA-8949613 APJL_1828 c072703d53e1ed3e21b508380f2ad478 345 SUPERFAMILY SSF81345 14 342 6.41E-76 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_1828 c072703d53e1ed3e21b508380f2ad478 345 Gene3D G3DSA:1.10.3470.10 17 345 4.4E-90 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_1828 c072703d53e1ed3e21b508380f2ad478 345 Pfam PF01032 FecCD transport family 32 342 6.5E-80 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APJL_1920 0ae11783985141cd174f13169419b626 281 SUPERFAMILY SSF51717 11 278 5.76E-104 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APJL_1920 0ae11783985141cd174f13169419b626 281 Pfam PF00809 Pterin binding enzyme 23 262 2.3E-86 T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APJL_1920 0ae11783985141cd174f13169419b626 281 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 22 37 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APJL_1920 0ae11783985141cd174f13169419b626 281 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 21 276 3.0E-103 T 11-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 APJL_1920 0ae11783985141cd174f13169419b626 281 Gene3D G3DSA:3.20.20.20 4 280 2.3E-109 T 11-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APJL_1920 0ae11783985141cd174f13169419b626 281 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 56 69 - T 11-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 APJL_0913 779c4e0e44919141eca78b73e00b3ec0 104 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 91 1.4E-17 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 APJL_0913 779c4e0e44919141eca78b73e00b3ec0 104 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 98 1.2E-28 T 11-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 APJL_0913 779c4e0e44919141eca78b73e00b3ec0 104 Gene3D G3DSA:3.30.160.100 1 104 8.7E-34 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like APJL_0913 779c4e0e44919141eca78b73e00b3ec0 104 SUPERFAMILY SSF69754 1 100 2.09E-28 T 11-10-2018 IPR036567 Ribosome hibernation promotion factor-like APJL_1963 74b9403e092dba822d33381040e05ba5 74 Pfam PF06196 Protein of unknown function (DUF997) 5 73 1.5E-24 T 11-10-2018 IPR010398 Protein of unknown function DUF997 APJL_1963 74b9403e092dba822d33381040e05ba5 74 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 5 72 1.0E-21 T 11-10-2018 IPR010398 Protein of unknown function DUF997 APJL_0640 ef1c6bb7b9867d2220b07a829c16a07e 177 Pfam PF07445 Primosomal replication protein priC 33 175 1.8E-18 T 11-10-2018 IPR010890 Primosomal replication PriB/PriC APJL_0882 867ea3f8d0bef22a2d3c79a2a4ed4534 430 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 58 422 1.1E-112 T 11-10-2018 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 APJL_0882 867ea3f8d0bef22a2d3c79a2a4ed4534 430 Pfam PF03606 C4-dicarboxylate anaerobic carrier 56 425 7.6E-30 T 11-10-2018 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 APJL_1661 3dfe5a4d51399e017addb60a6ff95115 174 SUPERFAMILY SSF158668 3 169 8.37E-52 T 11-10-2018 IPR038026 MtlR-like superfamily APJL_1661 3dfe5a4d51399e017addb60a6ff95115 174 Gene3D G3DSA:1.20.120.330 3 170 3.0E-52 T 11-10-2018 APJL_1661 3dfe5a4d51399e017addb60a6ff95115 174 Pfam PF05068 Mannitol repressor 5 169 7.8E-58 T 11-10-2018 IPR007761 Mannitol repressor MtlR-like APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 PRINTS PR01607 Apyrase family signature 22 40 1.6E-13 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 PRINTS PR01607 Apyrase family signature 205 222 1.6E-13 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 PRINTS PR01607 Apyrase family signature 259 279 1.6E-13 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 PRINTS PR01607 Apyrase family signature 232 255 1.6E-13 T 11-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 SUPERFAMILY SSF55816 332 537 1.11E-25 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 Gene3D G3DSA:3.90.780.10 334 547 2.4E-34 T 11-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 SUPERFAMILY SSF56300 18 321 1.82E-77 T 11-10-2018 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 Gene3D G3DSA:3.60.21.10 17 323 3.8E-78 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 Pfam PF00149 Calcineurin-like phosphoesterase 25 249 1.8E-16 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 Pfam PF02872 5'-nucleotidase, C-terminal domain 325 492 4.2E-29 T 11-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1779 e94a6499914abd0c511ea0f3f0f03a85 554 ProSitePatterns PS00786 5'-nucleotidase signature 2. 107 118 - T 11-10-2018 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 APJL_1907 5d3606faa64eca7d05250f43e055d185 154 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 154 4.6E-64 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APJL_1907 5d3606faa64eca7d05250f43e055d185 154 Pfam PF00364 Biotin-requiring enzyme 81 153 1.8E-23 T 11-10-2018 IPR000089 Biotin/lipoyl attachment APJL_1907 5d3606faa64eca7d05250f43e055d185 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 115 128 7.6E-18 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APJL_1907 5d3606faa64eca7d05250f43e055d185 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 100 114 7.6E-18 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APJL_1907 5d3606faa64eca7d05250f43e055d185 154 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 83 96 7.6E-18 T 11-10-2018 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 APJL_1907 5d3606faa64eca7d05250f43e055d185 154 SUPERFAMILY SSF51230 79 154 1.05E-24 T 11-10-2018 IPR011053 Single hybrid motif APJL_1907 5d3606faa64eca7d05250f43e055d185 154 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 110 127 - T 11-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 APJL_1907 5d3606faa64eca7d05250f43e055d185 154 Gene3D G3DSA:2.40.50.100 75 154 3.5E-30 T 11-10-2018 APJL_0285 e912802eec7dd37986449ee9bd66c976 183 PIRSF PIRSF000847 1 182 6.3E-44 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 APJL_0285 e912802eec7dd37986449ee9bd66c976 183 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 4 181 4.3E-57 T 11-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 APJL_0285 e912802eec7dd37986449ee9bd66c976 183 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 50 72 - T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APJL_0285 e912802eec7dd37986449ee9bd66c976 183 Pfam PF01066 CDP-alcohol phosphatidyltransferase 5 72 8.6E-16 T 11-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 APJL_0285 e912802eec7dd37986449ee9bd66c976 183 Gene3D G3DSA:1.20.120.1760 3 176 1.1E-15 T 11-10-2018 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 Gene3D G3DSA:3.40.50.1860 95 207 1.0E-83 T 11-10-2018 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 Pfam PF01177 Asp/Glu/Hydantoin racemase 10 213 1.0E-27 T 11-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 70 78 - T 11-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 SUPERFAMILY SSF53681 108 262 2.94E-32 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 Hamap MF_00258 Glutamate racemase [murI]. 3 262 32.104 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 TIGRFAM TIGR00067 glut_race: glutamate racemase 5 247 3.4E-71 T 11-10-2018 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 SUPERFAMILY SSF53681 5 106 2.29E-29 T 11-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 180 190 - T 11-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 APJL_1880 3e6fd8a4fcea4d5df9d50e967f371256 265 Gene3D G3DSA:3.40.50.1860 8 241 1.0E-83 T 11-10-2018 APJL_0494 bda5bca99b511c78975429b672036a20 148 PIRSF PIRSF006173 1 148 3.9E-55 T 11-10-2018 IPR008228 Uncharacterised conserved protein UCP006173 APJL_0494 bda5bca99b511c78975429b672036a20 148 Pfam PF03692 Putative zinc- or iron-chelating domain 27 97 2.7E-5 T 11-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein APJL_0459 ea68bf4adec969edb19b6169ec61f2b5 131 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 128 3.1E-47 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APJL_0459 ea68bf4adec969edb19b6169ec61f2b5 131 Gene3D G3DSA:2.170.150.20 2 130 3.2E-52 T 11-10-2018 APJL_0459 ea68bf4adec969edb19b6169ec61f2b5 131 Pfam PF01641 SelR domain 7 121 1.0E-45 T 11-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 APJL_0459 ea68bf4adec969edb19b6169ec61f2b5 131 SUPERFAMILY SSF51316 6 126 1.36E-51 T 11-10-2018 IPR011057 Mss4-like superfamily APJL_1225 3efc54ef7a73bc4c0057708f62f8954e 315 Gene3D G3DSA:1.50.10.150 1 315 1.9E-83 T 11-10-2018 IPR038665 Voltage-dependent anion channel superfamily APJL_1225 3efc54ef7a73bc4c0057708f62f8954e 315 Pfam PF03595 Voltage-dependent anion channel 8 304 4.5E-30 T 11-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 APJL_0216 176031f4fe07392bd368abbc6d5ce725 189 Pfam PF09618 CRISPR-associated protein (Cas_Csy4) 7 189 1.4E-48 T 11-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 APJL_0216 176031f4fe07392bd368abbc6d5ce725 189 Gene3D G3DSA:3.30.70.2540 1 189 5.5E-43 T 11-10-2018 APJL_0216 176031f4fe07392bd368abbc6d5ce725 189 TIGRFAM TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST 6 189 4.0E-52 T 11-10-2018 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 APJL_0223 700c25817b99707374b7b1e896628613 219 Pfam PF05643 Putative bacterial lipoprotein (DUF799) 10 208 4.7E-83 T 11-10-2018 IPR008517 Protein of unknown function DUF799 APJL_0223 700c25817b99707374b7b1e896628613 219 Gene3D G3DSA:3.40.50.10610 24 188 4.2E-61 T 11-10-2018 APJL_0876 d05947d18787107ae8880b52a754bd85 279 Pfam PF01928 CYTH domain 3 196 4.2E-29 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 APJL_0876 d05947d18787107ae8880b52a754bd85 279 SMART SM01118 2 199 2.3E-35 T 11-10-2018 IPR023577 CYTH domain Reactome: R-HSA-196819 APJL_0876 d05947d18787107ae8880b52a754bd85 279 SUPERFAMILY SSF55154 1 203 1.36E-40 T 11-10-2018 IPR033469 CYTH-like domain superfamily Reactome: R-HSA-196819 APJL_0876 d05947d18787107ae8880b52a754bd85 279 Gene3D G3DSA:2.40.320.10 1 198 2.6E-35 T 11-10-2018 APJL_1457 73f0a8d82182a8135322c039b4bb3370 204 TIGRFAM TIGR02161 napC_nirT: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family 1 183 1.3E-98 T 11-10-2018 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT GO:0016021|GO:0019333|GO:0020037 APJL_1457 73f0a8d82182a8135322c039b4bb3370 204 PIRSF PIRSF000013 1 192 1.4E-93 T 11-10-2018 IPR024717 Denitrification system component NapC/NirT/NrfH GO:0016021|GO:0019333|GO:0020037 APJL_1457 73f0a8d82182a8135322c039b4bb3370 204 Gene3D G3DSA:1.10.3820.10 10 188 1.6E-36 T 11-10-2018 IPR038266 NapC/NirT cytochrome c superfamily APJL_1457 73f0a8d82182a8135322c039b4bb3370 204 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 13 182 2.6E-72 T 11-10-2018 IPR005126 NapC/NirT cytochrome c, N-terminal APJL_1457 73f0a8d82182a8135322c039b4bb3370 204 SUPERFAMILY SSF48695 8 186 1.4E-59 T 11-10-2018 IPR036280 Multiheme cytochrome superfamily APJL_0062 e8a23994915d71daac9200212e8b3a01 315 Hamap MF_00492 Transaldolase [tal]. 1 315 51.684 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APJL_0062 e8a23994915d71daac9200212e8b3a01 315 SUPERFAMILY SSF51569 1 314 2.51E-117 T 11-10-2018 APJL_0062 e8a23994915d71daac9200212e8b3a01 315 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 13 310 1.5E-102 T 11-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APJL_0062 e8a23994915d71daac9200212e8b3a01 315 Gene3D G3DSA:3.20.20.70 1 315 2.2E-146 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0062 e8a23994915d71daac9200212e8b3a01 315 TIGRFAM TIGR00874 talAB: transaldolase 2 315 5.8E-164 T 11-10-2018 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APJL_0062 e8a23994915d71daac9200212e8b3a01 315 ProSitePatterns PS00958 Transaldolase active site. 128 145 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APJL_0062 e8a23994915d71daac9200212e8b3a01 315 ProSitePatterns PS01054 Transaldolase signature 1. 30 38 - T 11-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 APJL_1864 2b53e93d6c852f4d70b9d802986dee92 142 Pfam PF01850 PIN domain 4 124 1.0E-12 T 11-10-2018 IPR002716 PIN domain APJL_1864 2b53e93d6c852f4d70b9d802986dee92 142 Gene3D G3DSA:3.40.50.1010 3 140 1.8E-28 T 11-10-2018 APJL_1864 2b53e93d6c852f4d70b9d802986dee92 142 SUPERFAMILY SSF88723 1 139 2.44E-27 T 11-10-2018 IPR029060 PIN-like domain superfamily APJL_1774 1b8bc2431ea5e1fbe7d3b3b62acfd94b 130 SUPERFAMILY SSF54593 1 129 1.48E-30 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APJL_1774 1b8bc2431ea5e1fbe7d3b3b62acfd94b 130 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 127 1.8E-19 T 11-10-2018 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain APJL_1774 1b8bc2431ea5e1fbe7d3b3b62acfd94b 130 Gene3D G3DSA:3.10.180.10 10 129 3.5E-32 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APJL_1787 3d38fab0fc470e96d09bb38690c9aa7a 229 SUPERFAMILY SSF51366 13 222 2.24E-53 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_1787 3d38fab0fc470e96d09bb38690c9aa7a 229 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 35 225 3.5E-90 T 11-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 APJL_1787 3d38fab0fc470e96d09bb38690c9aa7a 229 Hamap MF_01235 Putative N-acetylmannosamine-6-phosphate 2-epimerase [nanE]. 11 225 36.889 T 11-10-2018 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9 APJL_1787 3d38fab0fc470e96d09bb38690c9aa7a 229 Gene3D G3DSA:3.20.20.70 1 229 4.0E-84 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1081 1d163393e55ff7fd2bd11d9eabc76c8e 186 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 24 182 4.8E-70 T 11-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ APJL_1081 1d163393e55ff7fd2bd11d9eabc76c8e 186 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 5 184 2.0E-73 T 11-10-2018 IPR006513 Conserved hypothetical protein CHP01626, YtfJ APJL_1081 1d163393e55ff7fd2bd11d9eabc76c8e 186 Gene3D G3DSA:3.40.30.10 39 182 3.0E-5 T 11-10-2018 APJL_1626 7e76f787955a140a5b24fa8a6e341e14 330 Hamap MF_00206 Lipoyl synthase [lipA]. 46 330 149.819 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APJL_1626 7e76f787955a140a5b24fa8a6e341e14 330 SUPERFAMILY SSF102114 62 328 2.88E-69 T 11-10-2018 APJL_1626 7e76f787955a140a5b24fa8a6e341e14 330 Pfam PF04055 Radical SAM superfamily 99 260 6.1E-16 T 11-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 APJL_1626 7e76f787955a140a5b24fa8a6e341e14 330 Gene3D G3DSA:3.20.20.70 92 298 9.9E-23 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1626 7e76f787955a140a5b24fa8a6e341e14 330 PIRSF PIRSF005963 1 330 4.7E-132 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APJL_1626 7e76f787955a140a5b24fa8a6e341e14 330 TIGRFAM TIGR00510 lipA: lipoyl synthase 32 330 3.3E-150 T 11-10-2018 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 APJL_1626 7e76f787955a140a5b24fa8a6e341e14 330 SMART SM00729 93 298 2.2E-18 T 11-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 APJL_1989 567c34fd23cb7b0eed0bc024957b7afb 207 SUPERFAMILY SSF55811 6 205 1.35E-38 T 11-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 APJL_1989 567c34fd23cb7b0eed0bc024957b7afb 207 Gene3D G3DSA:3.90.79.10 2 207 5.2E-53 T 11-10-2018 APJL_1989 567c34fd23cb7b0eed0bc024957b7afb 207 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 10 200 7.4E-64 T 11-10-2018 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 APJL_1989 567c34fd23cb7b0eed0bc024957b7afb 207 Pfam PF00293 NUDIX domain 53 177 1.0E-10 T 11-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 APJL_0284 7233d27f195e0d23a94817a58a3b376a 221 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 20 214 3.0E-39 T 11-10-2018 IPR006214 Bax inhibitor 1-related APJL_0995 b49cc32e7524bf05f764cd03b4198a53 318 Hamap MF_01850 tRNA-cytidine(32) 2-sulfurtransferase [ttcA]. 11 276 57.042 T 11-10-2018 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase GO:0008033 APJL_0995 b49cc32e7524bf05f764cd03b4198a53 318 PIRSF PIRSF004976 2 280 1.2E-74 T 11-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 APJL_0995 b49cc32e7524bf05f764cd03b4198a53 318 SUPERFAMILY SSF52402 22 241 4.19E-54 T 11-10-2018 APJL_0995 b49cc32e7524bf05f764cd03b4198a53 318 Pfam PF01171 PP-loop family 46 210 4.6E-15 T 11-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 APJL_0995 b49cc32e7524bf05f764cd03b4198a53 318 Gene3D G3DSA:3.40.50.620 4 264 1.7E-48 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0753 326091bd76d61e00aaf7c47f253de899 186 Gene3D G3DSA:1.20.1380.10 71 184 2.5E-39 T 11-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 APJL_0753 326091bd76d61e00aaf7c47f253de899 186 SUPERFAMILY SSF47598 1 35 8.15E-14 T 11-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 APJL_0753 326091bd76d61e00aaf7c47f253de899 186 Pfam PF17206 SeqA protein N-terminal domain 1 36 6.4E-24 T 11-10-2018 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal APJL_0753 326091bd76d61e00aaf7c47f253de899 186 PIRSF PIRSF019401 1 186 5.6E-52 T 11-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 APJL_0753 326091bd76d61e00aaf7c47f253de899 186 Pfam PF03925 SeqA protein C-terminal domain 74 182 7.9E-44 T 11-10-2018 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 APJL_0753 326091bd76d61e00aaf7c47f253de899 186 SUPERFAMILY SSF82808 69 184 5.23E-45 T 11-10-2018 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily GO:0003677 APJL_0753 326091bd76d61e00aaf7c47f253de899 186 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 185 42.251 T 11-10-2018 IPR005621 Negative modulator of initiation of replication SeqA GO:0003677|GO:0032297 APJL_0753 326091bd76d61e00aaf7c47f253de899 186 Gene3D G3DSA:1.10.1220.10 1 41 1.7E-23 T 11-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 APJL_0798 969b98d4d8fecd494896332080211318 255 SUPERFAMILY SSF142906 10 130 1.44E-31 T 11-10-2018 IPR038056 YjbR-like superfamily APJL_0798 969b98d4d8fecd494896332080211318 255 Pfam PF04237 YjbR 17 121 3.6E-14 T 11-10-2018 IPR007351 Uncharacterised protein YjbR APJL_0798 969b98d4d8fecd494896332080211318 255 Gene3D G3DSA:3.90.1150.30 8 131 1.3E-44 T 11-10-2018 IPR038056 YjbR-like superfamily APJL_0003 0acadb0b140bbf1acc62ab068b6a05b0 360 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 357 1.3E-141 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 APJL_0003 0acadb0b140bbf1acc62ab068b6a05b0 360 Gene3D G3DSA:3.40.50.300 8 331 6.2E-80 T 11-10-2018 APJL_0003 0acadb0b140bbf1acc62ab068b6a05b0 360 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 360 94.67 T 11-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 APJL_0003 0acadb0b140bbf1acc62ab068b6a05b0 360 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 341 3.1E-44 T 11-10-2018 IPR003395 RecF/RecN/SMC, N-terminal APJL_0003 0acadb0b140bbf1acc62ab068b6a05b0 360 Gene3D G3DSA:1.20.1050.90 120 297 6.2E-80 T 11-10-2018 APJL_0003 0acadb0b140bbf1acc62ab068b6a05b0 360 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 11-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 APJL_0003 0acadb0b140bbf1acc62ab068b6a05b0 360 SUPERFAMILY SSF52540 1 332 7.07E-43 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0003 0acadb0b140bbf1acc62ab068b6a05b0 360 ProSitePatterns PS00618 RecF protein signature 2. 298 316 - T 11-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 APJL_0052 a7629ee11ec22d739edca274f2eef10e 231 Pfam PF01168 Alanine racemase, N-terminal domain 6 224 2.3E-35 T 11-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 APJL_0052 a7629ee11ec22d739edca274f2eef10e 231 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 2 224 5.1E-93 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APJL_0052 a7629ee11ec22d739edca274f2eef10e 231 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 5 223 34.699 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APJL_0052 a7629ee11ec22d739edca274f2eef10e 231 PIRSF PIRSF004848 1 230 7.8E-82 T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APJL_0052 a7629ee11ec22d739edca274f2eef10e 231 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 74 88 - T 11-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 APJL_0052 a7629ee11ec22d739edca274f2eef10e 231 Gene3D G3DSA:3.20.20.10 1 230 1.2E-87 T 11-10-2018 IPR029066 PLP-binding barrel APJL_0052 a7629ee11ec22d739edca274f2eef10e 231 SUPERFAMILY SSF51419 1 222 6.94E-82 T 11-10-2018 IPR029066 PLP-binding barrel APJL_0126 25d3fa4a3ad719f4485eb7ed2fa3fc53 124 Gene3D G3DSA:2.60.40.3230 23 123 5.2E-17 T 11-10-2018 IPR038483 YcfL-like superfamily APJL_0126 25d3fa4a3ad719f4485eb7ed2fa3fc53 124 Pfam PF07233 Protein of unknown function (DUF1425) 43 121 5.3E-11 T 11-10-2018 IPR010824 Protein of unknown function DUF1425 APJL_0077 a0ee125b5942c2dd827486791d38c525 129 TIGRFAM TIGR02804 ExbD_2: TonB system transport protein ExbD 4 124 3.0E-49 T 11-10-2018 IPR014171 TonB system transport protein ExbD type-2 GO:0016020|GO:0055085 APJL_0077 a0ee125b5942c2dd827486791d38c525 129 Gene3D G3DSA:3.30.420.270 56 120 1.8E-5 T 11-10-2018 APJL_0077 a0ee125b5942c2dd827486791d38c525 129 Pfam PF02472 Biopolymer transport protein ExbD/TolR 5 124 6.1E-21 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 APJL_1398 48f22e170ebc8dbb4ce3a17f440d57e5 98 Gene3D G3DSA:3.30.1200.10 2 98 3.4E-29 T 11-10-2018 IPR036591 YggU-like superfamily APJL_1398 48f22e170ebc8dbb4ce3a17f440d57e5 98 SUPERFAMILY SSF69786 8 98 6.54E-28 T 11-10-2018 IPR036591 YggU-like superfamily APJL_1398 48f22e170ebc8dbb4ce3a17f440d57e5 98 SMART SM01152 9 86 1.7E-32 T 11-10-2018 IPR003746 Protein of unknown function DUF167 APJL_1398 48f22e170ebc8dbb4ce3a17f440d57e5 98 Hamap MF_00634 UPF0235 protein YggU [yggU]. 9 96 17.77 T 11-10-2018 IPR003746 Protein of unknown function DUF167 APJL_1398 48f22e170ebc8dbb4ce3a17f440d57e5 98 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 12 78 2.6E-23 T 11-10-2018 IPR003746 Protein of unknown function DUF167 APJL_1398 48f22e170ebc8dbb4ce3a17f440d57e5 98 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 11 93 6.4E-19 T 11-10-2018 IPR005228 Conserved hypothetical protein CHP00251 APJL_0991 2b01ba8e75c6d4ad64d9cd781e112a0a 183 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 175 6.4E-62 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 APJL_0991 2b01ba8e75c6d4ad64d9cd781e112a0a 183 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 176 17.083 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 APJL_0991 2b01ba8e75c6d4ad64d9cd781e112a0a 183 Pfam PF04279 Intracellular septation protein A 1 175 3.3E-61 T 11-10-2018 IPR006008 Intracellular septation protein A GO:0016021 APJL_0038 42c3b3b0cb58e4be4050921728a11abc 154 Pfam PF05433 Glycine zipper 2TM domain 63 102 4.1E-8 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 APJL_0859 29d0c7aa35995a69c43470a5b8a016ad 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 90 429 1.1E-72 T 11-10-2018 IPR000914 Solute-binding protein family 5 domain APJL_0859 29d0c7aa35995a69c43470a5b8a016ad 524 Gene3D G3DSA:3.90.76.10 57 201 5.3E-99 T 11-10-2018 APJL_0859 29d0c7aa35995a69c43470a5b8a016ad 524 Gene3D G3DSA:3.10.105.10 278 497 5.3E-99 T 11-10-2018 APJL_0859 29d0c7aa35995a69c43470a5b8a016ad 524 Gene3D G3DSA:3.40.190.10 202 503 5.3E-99 T 11-10-2018 APJL_0859 29d0c7aa35995a69c43470a5b8a016ad 524 SUPERFAMILY SSF53850 55 523 1.49E-104 T 11-10-2018 APJL_0859 29d0c7aa35995a69c43470a5b8a016ad 524 PIRSF PIRSF002741 14 515 2.2E-79 T 11-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 APJL_1766 6396f41d3d4b5e53316440979c92c4ac 76 Gene3D G3DSA:2.10.260.10 1 76 1.7E-28 T 11-10-2018 APJL_1766 6396f41d3d4b5e53316440979c92c4ac 76 Pfam PF04014 Antidote-toxin recognition MazE, bacterial antitoxin 6 52 1.3E-8 T 11-10-2018 IPR007159 SpoVT-AbrB domain GO:0003677 APJL_1766 6396f41d3d4b5e53316440979c92c4ac 76 SUPERFAMILY SSF89447 1 65 6.8E-9 T 11-10-2018 IPR037914 SpoVT-AbrB domain superfamily APJL_1599 d08242f998e4a620e1b55ef104ed6eaf 136 Gene3D G3DSA:3.30.420.270 65 130 2.7E-11 T 11-10-2018 APJL_1599 d08242f998e4a620e1b55ef104ed6eaf 136 Pfam PF02472 Biopolymer transport protein ExbD/TolR 13 134 5.1E-28 T 11-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 APJL_0509 f5b630943205e014dfcec84fd61daf14 447 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 47 166 1.4E-7 T 11-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 APJL_0509 f5b630943205e014dfcec84fd61daf14 447 SUPERFAMILY SSF51905 174 302 1.25E-17 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0509 f5b630943205e014dfcec84fd61daf14 447 Gene3D G3DSA:3.50.50.100 46 429 6.0E-81 T 11-10-2018 APJL_0509 f5b630943205e014dfcec84fd61daf14 447 SUPERFAMILY SSF51905 47 189 1.16E-22 T 11-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily APJL_0210 7c468a96751cbc8874de78f0d1d3c4fa 116 Pfam PF13518 Helix-turn-helix domain 12 65 1.4E-12 T 11-10-2018 APJL_0210 7c468a96751cbc8874de78f0d1d3c4fa 116 SUPERFAMILY SSF46689 4 108 1.0E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1932 dfd61f8da0368a39a8158d8dc1bbb1e5 176 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 9 176 3.2E-92 T 11-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APJL_1932 dfd61f8da0368a39a8158d8dc1bbb1e5 176 Pfam PF07977 FabA-like domain 33 162 1.9E-51 T 11-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APJL_1932 dfd61f8da0368a39a8158d8dc1bbb1e5 176 SUPERFAMILY SSF54637 10 173 6.58E-54 T 11-10-2018 IPR029069 HotDog domain superfamily APJL_1932 dfd61f8da0368a39a8158d8dc1bbb1e5 176 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 6 176 50.252 T 11-10-2018 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 APJL_1932 dfd61f8da0368a39a8158d8dc1bbb1e5 176 Gene3D G3DSA:3.10.129.10 7 176 7.8E-60 T 11-10-2018 APJL_0215 099e4694eb80419e7dcddc834b80a49b 318 Pfam PF01867 CRISPR associated protein Cas1 50 270 2.9E-10 T 11-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 APJL_0215 099e4694eb80419e7dcddc834b80a49b 318 Gene3D G3DSA:1.20.120.920 117 318 6.6E-60 T 11-10-2018 APJL_0215 099e4694eb80419e7dcddc834b80a49b 318 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 22 314 1.2E-68 T 11-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 APJL_0215 099e4694eb80419e7dcddc834b80a49b 318 TIGRFAM TIGR03637 cas1_YPEST: CRISPR-associated endonuclease Cas1, subtype I-F/YPEST 15 312 1.3E-144 T 11-10-2018 IPR019857 CRISPR-associated protein Cas1, YPEST subtype GO:0004520|GO:0043571|GO:0046872 APJL_0215 099e4694eb80419e7dcddc834b80a49b 318 Gene3D G3DSA:3.100.10.20 14 116 7.6E-46 T 11-10-2018 APJL_0159 aa29e198ad2a956f64cb9b1accd108f3 389 Gene3D G3DSA:3.40.50.620 15 236 3.3E-94 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0159 aa29e198ad2a956f64cb9b1accd108f3 389 Gene3D G3DSA:2.30.30.280 237 305 2.0E-26 T 11-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 APJL_0159 aa29e198ad2a956f64cb9b1accd108f3 389 Gene3D G3DSA:2.40.30.10 306 389 2.7E-33 T 11-10-2018 APJL_0159 aa29e198ad2a956f64cb9b1accd108f3 389 SUPERFAMILY SSF52402 18 319 2.12E-55 T 11-10-2018 APJL_0159 aa29e198ad2a956f64cb9b1accd108f3 389 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 30 384 4.5E-156 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 APJL_0159 aa29e198ad2a956f64cb9b1accd108f3 389 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 30 385 40.083 T 11-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 APJL_0159 aa29e198ad2a956f64cb9b1accd108f3 389 Pfam PF03054 tRNA methyl transferase 30 384 6.1E-144 T 11-10-2018 APJL_0068 540e89a8a67826e93004194caa4e1eca 329 Gene3D G3DSA:3.40.50.300 11 329 2.9E-100 T 11-10-2018 APJL_0068 540e89a8a67826e93004194caa4e1eca 329 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 242 307 1.4E-21 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APJL_0068 540e89a8a67826e93004194caa4e1eca 329 SUPERFAMILY SSF52540 13 262 4.6E-72 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0068 540e89a8a67826e93004194caa4e1eca 329 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_0068 540e89a8a67826e93004194caa4e1eca 329 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 326 1.8E-29 T 11-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 APJL_0068 540e89a8a67826e93004194caa4e1eca 329 SMART SM00382 48 240 8.2E-11 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0068 540e89a8a67826e93004194caa4e1eca 329 Pfam PF00005 ABC transporter 40 190 1.3E-30 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_1157 bc75ba49f14c9a81c8bedcb06a18538f 83 Pfam PF04380 Membrane fusogenic activity 1 77 8.4E-28 T 11-10-2018 IPR007475 Membrane fusogenic activity APJL_0438 bcf3c40bb9ee968bca0078c1c238961b 237 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 8 236 38.267 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APJL_0438 bcf3c40bb9ee968bca0078c1c238961b 237 Gene3D G3DSA:3.40.1180.10 2 237 5.2E-93 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 APJL_0438 bcf3c40bb9ee968bca0078c1c238961b 237 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 8 235 1.1E-94 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APJL_0438 bcf3c40bb9ee968bca0078c1c238961b 237 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 181 198 - T 11-10-2018 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 APJL_0438 bcf3c40bb9ee968bca0078c1c238961b 237 Pfam PF01255 Putative undecaprenyl diphosphate synthase 15 235 1.0E-80 T 11-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 APJL_0438 bcf3c40bb9ee968bca0078c1c238961b 237 SUPERFAMILY SSF64005 5 231 1.18E-86 T 11-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 APJL_1470 d48233d1316b99b319e20b2ce3471866 173 Pfam PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family 77 165 3.1E-28 T 11-10-2018 IPR007269 Isoprenylcysteine carboxyl methyltransferase GO:0004671|GO:0006481|GO:0016021 Reactome: R-HSA-163841 APJL_1470 d48233d1316b99b319e20b2ce3471866 173 Gene3D G3DSA:1.20.120.1630 1 171 4.2E-15 T 11-10-2018 APJL_0963 abeec579c0532cc41e95626a40574b23 361 SMART SM01126 155 319 1.1E-57 T 11-10-2018 IPR024445 ISXO2-like transposase domain APJL_0963 abeec579c0532cc41e95626a40574b23 361 Pfam PF12760 Transposase zinc-ribbon domain 40 87 1.7E-16 T 11-10-2018 IPR024442 Transposase, zinc-ribbon APJL_0963 abeec579c0532cc41e95626a40574b23 361 Pfam PF12762 ISXO2-like transposase domain 155 319 8.3E-52 T 11-10-2018 IPR024445 ISXO2-like transposase domain APJL_1466 95629908e720d7dc88bdb4e0c76025cc 169 Pfam PF13518 Helix-turn-helix domain 65 118 3.3E-12 T 11-10-2018 APJL_1466 95629908e720d7dc88bdb4e0c76025cc 169 SUPERFAMILY SSF48295 43 119 4.92E-15 T 11-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 APJL_0807 8dfe3402da465282c2e1403a70d2131d 228 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 5 222 6.0E-80 T 11-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APJL_0807 8dfe3402da465282c2e1403a70d2131d 228 SUPERFAMILY SSF53448 4 221 1.73E-61 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0807 8dfe3402da465282c2e1403a70d2131d 228 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 99 106 - T 11-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APJL_0807 8dfe3402da465282c2e1403a70d2131d 228 Gene3D G3DSA:3.90.550.10 1 227 7.8E-73 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_0807 8dfe3402da465282c2e1403a70d2131d 228 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 4 220 42.359 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APJL_0807 8dfe3402da465282c2e1403a70d2131d 228 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 220 3.0E-73 T 11-10-2018 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 APJL_0165 88f412797979963436ba1a5734d1e7f2 155 SUPERFAMILY SSF102114 17 114 3.34E-7 T 11-10-2018 APJL_0165 88f412797979963436ba1a5734d1e7f2 155 Pfam PF13353 4Fe-4S single cluster domain 23 123 6.4E-12 T 11-10-2018 APJL_0165 88f412797979963436ba1a5734d1e7f2 155 TIGRFAM TIGR02826 RNR_activ_nrdG3: anaerobic ribonucleoside-triphosphate reductase activating protein 6 151 1.0E-59 T 11-10-2018 IPR014191 Anaerobic ribonucleoside-triphosphate reductase activator APJL_0165 88f412797979963436ba1a5734d1e7f2 155 Gene3D G3DSA:3.20.20.70 9 121 8.6E-14 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1171 f072cda05193b868d47c401266354352 246 Gene3D G3DSA:3.30.70.980 130 204 3.1E-59 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APJL_1171 f072cda05193b868d47c401266354352 246 Gene3D G3DSA:1.10.10.200 1 81 2.6E-34 T 11-10-2018 IPR017856 Integrase-like, N-terminal APJL_1171 f072cda05193b868d47c401266354352 246 Gene3D G3DSA:3.30.70.980 86 235 3.1E-59 T 11-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APJL_1171 f072cda05193b868d47c401266354352 246 SUPERFAMILY SSF75625 3 243 1.7E-94 T 11-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APJL_1171 f072cda05193b868d47c401266354352 246 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 236 8.6E-106 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APJL_1171 f072cda05193b868d47c401266354352 246 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 238 35.619 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APJL_1171 f072cda05193b868d47c401266354352 246 Pfam PF01709 Transcriptional regulator 5 235 3.4E-91 T 11-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 APJL_2082 1e0035128118614c7fa2ee0d89bc8271 164 Gene3D G3DSA:3.40.30.10 2 164 2.1E-16 T 11-10-2018 APJL_2082 1e0035128118614c7fa2ee0d89bc8271 164 SUPERFAMILY SSF52833 50 115 5.91E-5 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_2082 1e0035128118614c7fa2ee0d89bc8271 164 Pfam PF14595 Thioredoxin 1 131 1.8E-34 T 11-10-2018 APJL_1373 d2abb9e30c90f56aef3d02d61675e9fd 165 Pfam PF01161 Phosphatidylethanolamine-binding protein 28 163 6.3E-30 T 11-10-2018 IPR008914 Phosphatidylethanolamine-binding protein APJL_1373 d2abb9e30c90f56aef3d02d61675e9fd 165 SUPERFAMILY SSF49777 1 163 1.83E-32 T 11-10-2018 IPR036610 PEBP-like superfamily APJL_1373 d2abb9e30c90f56aef3d02d61675e9fd 165 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 26 162 4.6E-32 T 11-10-2018 IPR005247 YbhB/YbcL APJL_1373 d2abb9e30c90f56aef3d02d61675e9fd 165 Gene3D G3DSA:3.90.280.10 1 165 3.8E-44 T 11-10-2018 IPR036610 PEBP-like superfamily APJL_1164 be79f8ce44eae556fe59d29d710679e5 201 Gene3D G3DSA:3.30.470.10 1 79 9.7E-32 T 11-10-2018 APJL_1164 be79f8ce44eae556fe59d29d710679e5 201 Gene3D G3DSA:3.20.10.10 80 184 5.8E-19 T 11-10-2018 APJL_1164 be79f8ce44eae556fe59d29d710679e5 201 SUPERFAMILY SSF56752 4 184 2.75E-24 T 11-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 APJL_0936 3db32fc5be892579eeae50e47779466c 210 Pfam PF10946 Protein of unknown function DUF2625 4 184 2.8E-70 T 11-10-2018 IPR021239 Protein of unknown function DUF2625 APJL_1496 f5292d57f0e9febc8da6a84ca2d8b82d 305 Pfam PF01757 Acyltransferase family 11 290 2.5E-13 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 APJL_0700 09b88e114b9614383c15f4d25ba44dd2 362 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 2 361 49.12 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 APJL_0700 09b88e114b9614383c15f4d25ba44dd2 362 PIRSF PIRSF000525 1 362 4.1E-146 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 APJL_0700 09b88e114b9614383c15f4d25ba44dd2 362 Gene3D G3DSA:3.40.640.10 17 252 6.8E-88 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_0700 09b88e114b9614383c15f4d25ba44dd2 362 SUPERFAMILY SSF53383 1 360 1.08E-115 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0700 09b88e114b9614383c15f4d25ba44dd2 362 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 4 360 3.5E-159 T 11-10-2018 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 APJL_0700 09b88e114b9614383c15f4d25ba44dd2 362 Pfam PF00266 Aminotransferase class-V 4 350 4.3E-69 T 11-10-2018 IPR000192 Aminotransferase class V domain APJL_0700 09b88e114b9614383c15f4d25ba44dd2 362 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 208 - T 11-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site APJL_0700 09b88e114b9614383c15f4d25ba44dd2 362 Gene3D G3DSA:3.90.1150.10 253 362 1.9E-40 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_0456 bbfacccd97150f78ed2c026fceea48d5 245 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 19 242 3.3E-78 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase APJL_0456 bbfacccd97150f78ed2c026fceea48d5 245 Gene3D G3DSA:3.60.140.10 1 243 6.1E-92 T 11-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily APJL_0456 bbfacccd97150f78ed2c026fceea48d5 245 SUPERFAMILY SSF64438 4 243 1.5E-85 T 11-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic APJL_0456 bbfacccd97150f78ed2c026fceea48d5 245 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 24 243 5.7E-72 T 11-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 Gene3D G3DSA:3.50.80.20 93 190 1.5E-24 T 11-10-2018 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 52 451 3.1E-156 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 65 84 5.0E-34 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 364 378 5.0E-34 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 349 363 5.0E-34 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 428 441 5.0E-34 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 290 312 5.0E-34 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 SUPERFAMILY SSF56601 32 474 1.34E-94 T 11-10-2018 IPR012338 Beta-lactamase/transpeptidase-like APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 Gene3D G3DSA:3.40.710.10 247 480 3.8E-58 T 11-10-2018 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 Gene3D G3DSA:3.40.710.10 27 92 6.1E-9 T 11-10-2018 APJL_0955 bc8e25697e5d959f9531a66292e024b4 480 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 29 472 3.3E-149 T 11-10-2018 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 APJL_1032 9e9b6896a12ada37dd1d4895c8dcd888 240 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 6.7E-122 T 11-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 APJL_1032 9e9b6896a12ada37dd1d4895c8dcd888 240 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 51.414 T 11-10-2018 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 APJL_1032 9e9b6896a12ada37dd1d4895c8dcd888 240 Gene3D G3DSA:3.40.50.1580 1 239 3.8E-74 T 11-10-2018 APJL_1032 9e9b6896a12ada37dd1d4895c8dcd888 240 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 11-10-2018 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 APJL_1032 9e9b6896a12ada37dd1d4895c8dcd888 240 Pfam PF01048 Phosphorylase superfamily 15 217 1.5E-39 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APJL_1032 9e9b6896a12ada37dd1d4895c8dcd888 240 SUPERFAMILY SSF53167 3 235 7.59E-92 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 APJL_1069 179c709f52af87f8015a1148aaf47013 177 Pfam PF08534 Redoxin 39 161 6.8E-12 T 11-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 APJL_1069 179c709f52af87f8015a1148aaf47013 177 SUPERFAMILY SSF52833 38 176 1.36E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1069 179c709f52af87f8015a1148aaf47013 177 Gene3D G3DSA:3.40.30.10 25 177 6.7E-28 T 11-10-2018 APJL_1565 12c34408fabecade370b783ee4d65aef 155 SUPERFAMILY SSF55729 11 144 3.42E-13 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_1565 12c34408fabecade370b783ee4d65aef 155 Gene3D G3DSA:3.40.630.30 1 155 1.1E-44 T 11-10-2018 APJL_1565 12c34408fabecade370b783ee4d65aef 155 Pfam PF13508 Acetyltransferase (GNAT) domain 40 142 3.3E-7 T 11-10-2018 IPR000182 GNAT domain APJL_1837 d95a4b62184d8438bbec576922774ba9 127 Gene3D G3DSA:3.40.960.10 20 124 1.2E-31 T 11-10-2018 APJL_1837 d95a4b62184d8438bbec576922774ba9 127 SUPERFAMILY SSF52980 15 121 1.45E-16 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APJL_1837 d95a4b62184d8438bbec576922774ba9 127 Pfam PF04480 Protein of unknown function (DUF559) 12 119 6.0E-43 T 11-10-2018 IPR007569 Protein of unknown function DUF559 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 SUPERFAMILY SSF55174 22 73 3.53E-9 T 11-10-2018 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 19 317 7.7E-98 T 11-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 SUPERFAMILY SSF55120 94 317 3.84E-65 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 Pfam PF00849 RNA pseudouridylate synthase 105 252 9.9E-29 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 Gene3D G3DSA:3.10.290.10 11 75 1.2E-16 T 11-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 Pfam PF01479 S4 domain 23 69 2.5E-10 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 143 157 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 SMART SM00363 23 82 1.4E-8 T 11-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 APJL_1921 2c0af8cfa4f89ae0b2cccbd5e6020764 321 Gene3D G3DSA:3.30.2350.10 95 320 2.9E-85 T 11-10-2018 APJL_0096 d0297912d14a50bc4068d13d92b09e05 276 Pfam PF02535 ZIP Zinc transporter 124 271 8.2E-16 T 11-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 APJL_1997 864e6c080b47cce11fe659cf8240512e 276 Pfam PF03631 Virulence factor BrkB 19 263 6.1E-57 T 11-10-2018 IPR017039 Virulence factor BrkB APJL_1997 864e6c080b47cce11fe659cf8240512e 276 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 7 268 22.006 T 11-10-2018 IPR023679 Uncharacterised protein family UPF0761, bacterial APJL_1997 864e6c080b47cce11fe659cf8240512e 276 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 8 264 3.0E-80 T 11-10-2018 IPR017039 Virulence factor BrkB APJL_1997 864e6c080b47cce11fe659cf8240512e 276 PIRSF PIRSF035875 4 275 3.5E-59 T 11-10-2018 IPR017039 Virulence factor BrkB APJL_2003 2c099e7cf45a622fc3f1cf55b0efd185 284 Gene3D G3DSA:2.40.160.90 175 276 3.3E-14 T 11-10-2018 APJL_2003 2c099e7cf45a622fc3f1cf55b0efd185 284 Pfam PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B 159 272 8.1E-10 T 11-10-2018 IPR001677 Transferrin-binding protein, C-lobe/N-lobe beta barrel domain APJL_2003 2c099e7cf45a622fc3f1cf55b0efd185 284 SUPERFAMILY SSF56925 161 272 7.61E-10 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_1214 59b2c907b9c3f8dc834d52e296128842 217 SUPERFAMILY SSF55469 8 216 9.55E-57 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_1214 59b2c907b9c3f8dc834d52e296128842 217 Gene3D G3DSA:3.40.109.10 3 217 7.6E-63 T 11-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 APJL_1214 59b2c907b9c3f8dc834d52e296128842 217 Pfam PF00881 Nitroreductase family 14 199 7.6E-28 T 11-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 APJL_0217 affcb1aa91a627adebb9051935db58e3 331 Pfam PF09615 CRISPR-associated protein (Cas_Csy3) 6 326 4.7E-141 T 11-10-2018 IPR013399 CRISPR-associated protein Csy3 APJL_0217 affcb1aa91a627adebb9051935db58e3 331 TIGRFAM TIGR02566 cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3 6 329 2.6E-130 T 11-10-2018 IPR013399 CRISPR-associated protein Csy3 APJL_0330 cebe3269b57851a46f8504e862fe1c06 222 SUPERFAMILY SSF55120 13 219 4.64E-60 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0330 cebe3269b57851a46f8504e862fe1c06 222 Gene3D G3DSA:3.30.2350.10 5 222 1.3E-66 T 11-10-2018 APJL_0330 cebe3269b57851a46f8504e862fe1c06 222 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 60 74 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0330 cebe3269b57851a46f8504e862fe1c06 222 Pfam PF00849 RNA pseudouridylate synthase 22 171 5.4E-27 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_1440 9ffa38833c26df57d459ad24b1bf1b38 206 Gene3D G3DSA:1.10.1660.10 3 200 9.5E-15 T 11-10-2018 APJL_1440 9ffa38833c26df57d459ad24b1bf1b38 206 Pfam PF13411 MerR HTH family regulatory protein 3 71 1.6E-13 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APJL_1440 9ffa38833c26df57d459ad24b1bf1b38 206 SMART SM00422 2 72 0.0061 T 11-10-2018 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 APJL_1440 9ffa38833c26df57d459ad24b1bf1b38 206 SUPERFAMILY SSF46955 1 79 2.75E-12 T 11-10-2018 IPR009061 Putative DNA-binding domain superfamily APJL_1485 97fb1b26cdec34ad8f7f80f9c394a039 370 Gene3D G3DSA:3.30.1890.10 49 247 1.5E-25 T 11-10-2018 APJL_1485 97fb1b26cdec34ad8f7f80f9c394a039 370 Gene3D G3DSA:3.30.1890.10 256 342 6.9E-14 T 11-10-2018 APJL_1485 97fb1b26cdec34ad8f7f80f9c394a039 370 Pfam PF02706 Chain length determinant protein 13 76 1.8E-17 T 11-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 APJL_1485 97fb1b26cdec34ad8f7f80f9c394a039 370 SUPERFAMILY SSF160355 52 334 2.88E-54 T 11-10-2018 APJL_0691 3ddcb98dc4f3623f03cc9891430bdd9f 151 SUPERFAMILY SSF54690 4 150 5.62E-53 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 APJL_0691 3ddcb98dc4f3623f03cc9891430bdd9f 151 Pfam PF02391 MoaE protein 8 121 3.5E-36 T 11-10-2018 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 APJL_0691 3ddcb98dc4f3623f03cc9891430bdd9f 151 Gene3D G3DSA:3.90.1170.40 1 150 8.6E-53 T 11-10-2018 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|MetaCyc: PWY-7887|Reactome: R-HSA-947581 APJL_1381 9b1568c889a11edf5a64cf3c193cca43 123 Gene3D G3DSA:3.40.1350.10 16 122 2.1E-27 T 11-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 APJL_1381 9b1568c889a11edf5a64cf3c193cca43 123 SUPERFAMILY SSF52980 10 122 8.71E-21 T 11-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 APJL_1381 9b1568c889a11edf5a64cf3c193cca43 123 Pfam PF02021 Uncharacterised protein family UPF0102 17 108 1.1E-24 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 APJL_1381 9b1568c889a11edf5a64cf3c193cca43 123 Hamap MF_00048 UPF0102 protein YraN [yraN]. 9 122 21.767 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 APJL_1381 9b1568c889a11edf5a64cf3c193cca43 123 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 9 122 2.0E-42 T 11-10-2018 IPR003509 Uncharacterised protein family UPF0102 APJL_1104 c30eec2cdb4299103decc4004f64fe57 333 PIRSF PIRSF005508 1 333 6.9E-121 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 APJL_1104 c30eec2cdb4299103decc4004f64fe57 333 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 1 327 1.6E-122 T 11-10-2018 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 APJL_1104 c30eec2cdb4299103decc4004f64fe57 333 Gene3D G3DSA:1.20.1530.20 2 331 2.2E-28 T 11-10-2018 IPR038770 Sodium/solute symporter superfamily APJL_1104 c30eec2cdb4299103decc4004f64fe57 333 Pfam PF01758 Sodium Bile acid symporter family 47 240 1.2E-46 T 11-10-2018 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 APJL_1393 d68c64f02b8a1c41c1ca1aa257c4f4d4 88 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 11 82 6.8E-18 T 11-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 APJL_1393 d68c64f02b8a1c41c1ca1aa257c4f4d4 88 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 8 85 1.2E-20 T 11-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 APJL_1393 d68c64f02b8a1c41c1ca1aa257c4f4d4 88 Hamap MF_00404 Probable oxaloacetate decarboxylase gamma chain [oadG]. 1 88 36.196 T 11-10-2018 IPR023424 Oxaloacetate decarboxylase gamma chain, probable GO:0008948 KEGG: 00620+4.1.1.3 APJL_1265 33e9ffe6cc693c57eb617c1bff328cb1 463 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 412 428 - T 11-10-2018 IPR031312 Sodium/sulphate symporter, conserved site Reactome: R-HSA-433137 APJL_1265 33e9ffe6cc693c57eb617c1bff328cb1 463 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 36 462 1.3E-128 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APJL_1265 33e9ffe6cc693c57eb617c1bff328cb1 463 Pfam PF00939 Sodium:sulfate symporter transmembrane region 35 463 5.5E-62 T 11-10-2018 IPR001898 Solute carrier family 13 GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 APJL_1569 80aa1f350418981d2df1cf03b9692af6 96 ProDom PD394376 MEMBRANE PM1437 TRANSMEMBRANE 37 94 2.0E-7 T 11-10-2018 IPR035333 Protein of unknown function DUF5389 APJL_1569 80aa1f350418981d2df1cf03b9692af6 96 Pfam PF17364 Family of unknown function (DUF5389) 3 93 6.9E-27 T 11-10-2018 IPR035333 Protein of unknown function DUF5389 APJL_0112 7698885816862c06f8b2c800955afd4a 183 Gene3D G3DSA:1.20.120.740 2 183 4.1E-45 T 11-10-2018 APJL_0112 7698885816862c06f8b2c800955afd4a 183 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 8 161 1.8E-12 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 APJL_0112 7698885816862c06f8b2c800955afd4a 183 Pfam PF03695 Uncharacterised protein family (UPF0149) 8 171 2.5E-27 T 11-10-2018 IPR011978 Uncharacterised protein family UPF0149 APJL_0112 7698885816862c06f8b2c800955afd4a 183 SUPERFAMILY SSF101327 7 170 4.97E-44 T 11-10-2018 IPR036255 YgfB-like superfamily APJL_0608 a445c5c9a145a9144a8b8a6fcb2eb511 169 SUPERFAMILY SSF46689 57 161 4.3E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0608 a445c5c9a145a9144a8b8a6fcb2eb511 169 SUPERFAMILY SSF46689 1 52 3.05E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0608 a445c5c9a145a9144a8b8a6fcb2eb511 169 Pfam PF13518 Helix-turn-helix domain 65 118 7.0E-12 T 11-10-2018 APJL_0608 a445c5c9a145a9144a8b8a6fcb2eb511 169 Pfam PF13518 Helix-turn-helix domain 8 53 9.6E-6 T 11-10-2018 APJL_0454 721e1b22611165d9433af7c0aa50ad82 333 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 332 41.848 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 APJL_0454 721e1b22611165d9433af7c0aa50ad82 333 Pfam PF04245 37-kD nucleoid-associated bacterial protein 9 326 1.5E-92 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 APJL_1213 1e4d5ab1ffec5ce1025d86774f49a2a1 289 PIRSF PIRSF000103 2 289 7.2E-78 T 11-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 APJL_1213 1e4d5ab1ffec5ce1025d86774f49a2a1 289 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 166 283 1.3E-19 T 11-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 APJL_1213 1e4d5ab1ffec5ce1025d86774f49a2a1 289 SUPERFAMILY SSF48179 165 286 1.7E-27 T 11-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 APJL_1213 1e4d5ab1ffec5ce1025d86774f49a2a1 289 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 7 163 5.9E-37 T 11-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 APJL_1213 1e4d5ab1ffec5ce1025d86774f49a2a1 289 Gene3D G3DSA:3.40.50.720 3 163 1.5E-43 T 11-10-2018 APJL_1213 1e4d5ab1ffec5ce1025d86774f49a2a1 289 SUPERFAMILY SSF51735 6 165 1.6E-38 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1213 1e4d5ab1ffec5ce1025d86774f49a2a1 289 Gene3D G3DSA:1.10.1040.10 164 289 1.5E-27 T 11-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 APJL_1413 0c1a5f600f70b74120494e00110758c7 152 Pfam PF06173 Protein of unknown function (DUF986) 2 150 5.3E-57 T 11-10-2018 IPR009328 Protein of unknown function DUF986 APJL_1413 0c1a5f600f70b74120494e00110758c7 152 PIRSF PIRSF020687 1 151 3.0E-53 T 11-10-2018 IPR009328 Protein of unknown function DUF986 APJL_1413 0c1a5f600f70b74120494e00110758c7 152 ProDom PD091196 MEMBRANE UPF0266 TRANSMEMBRANE INNER YOBD PLU2700 LMO0779 PM0830 YPO1755/Y2554/YP1637 LIN0773 1 151 1.0E-34 T 11-10-2018 IPR009328 Protein of unknown function DUF986 APJL_1413 0c1a5f600f70b74120494e00110758c7 152 Hamap MF_01071 UPF0266 membrane protein YobD [yobD]. 1 151 23.035 T 11-10-2018 IPR009328 Protein of unknown function DUF986 APJL_2031 4d38b0f5f2fe5bb95f6dc2db023cf0ba 210 SUPERFAMILY SSF55718 20 125 1.18E-8 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily APJL_2031 4d38b0f5f2fe5bb95f6dc2db023cf0ba 210 Pfam PF02036 SCP-2 sterol transfer family 23 121 8.8E-20 T 11-10-2018 IPR003033 SCP2 sterol-binding domain APJL_2031 4d38b0f5f2fe5bb95f6dc2db023cf0ba 210 Gene3D G3DSA:3.30.1050.10 39 128 2.0E-5 T 11-10-2018 IPR036527 SCP2 sterol-binding domain superfamily APJL_1968 c30b10ea9df941ff6e9f12a757082ee1 830 SUPERFAMILY SSF48452 345 524 2.53E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1968 c30b10ea9df941ff6e9f12a757082ee1 830 Gene3D G3DSA:1.25.40.10 283 552 1.4E-13 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1968 c30b10ea9df941ff6e9f12a757082ee1 830 SUPERFAMILY SSF48452 105 405 5.69E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1968 c30b10ea9df941ff6e9f12a757082ee1 830 TIGRFAM TIGR03939 PGA_TPR_OMP: poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA 36 830 3.4E-271 T 11-10-2018 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA GO:1901515 APJL_1968 c30b10ea9df941ff6e9f12a757082ee1 830 Gene3D G3DSA:1.25.40.10 60 262 8.3E-9 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1655 efa8ea7b117dab42545ed17cedeb38f6 202 Gene3D G3DSA:1.10.1760.20 1 197 3.3E-28 T 11-10-2018 APJL_1655 efa8ea7b117dab42545ed17cedeb38f6 202 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 197 7.0E-38 T 11-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 APJL_1654 8123182d44f34fb240ac45d8da5b07d4 205 Pfam PF02361 Cobalt transport protein 11 201 1.7E-16 T 11-10-2018 IPR003339 ABC/ECF transporter, transmembrane component APJL_0299 dbf82a63be6e6b11f40fe3223da98980 333 Pfam PF13310 Virulence protein RhuM family 64 307 1.3E-101 T 11-10-2018 IPR011204 Virulence protein RhuM-like APJL_0299 dbf82a63be6e6b11f40fe3223da98980 333 PIRSF PIRSF015268 1 333 4.3E-128 T 11-10-2018 IPR011204 Virulence protein RhuM-like APJL_1530 6ed091e5f176a323587f2e7afc8f8504 140 SUPERFAMILY SSF55729 2 139 8.33E-35 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_1530 6ed091e5f176a323587f2e7afc8f8504 140 Gene3D G3DSA:3.40.630.30 1 138 4.6E-40 T 11-10-2018 APJL_1530 6ed091e5f176a323587f2e7afc8f8504 140 Pfam PF13673 Acetyltransferase (GNAT) domain 41 138 8.1E-17 T 11-10-2018 IPR000182 GNAT domain APJL_2006 1eaa4db5d8c6a7ed4f4371caec3b6b50 349 SUPERFAMILY SSF51735 140 305 8.85E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_2006 1eaa4db5d8c6a7ed4f4371caec3b6b50 349 Gene3D G3DSA:3.40.50.720 151 288 4.6E-120 T 11-10-2018 APJL_2006 1eaa4db5d8c6a7ed4f4371caec3b6b50 349 Pfam PF00107 Zinc-binding dehydrogenase 177 301 1.6E-28 T 11-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 APJL_2006 1eaa4db5d8c6a7ed4f4371caec3b6b50 349 SMART SM00829 15 337 8.4E-9 T 11-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 APJL_2006 1eaa4db5d8c6a7ed4f4371caec3b6b50 349 SUPERFAMILY SSF50129 1 181 5.63E-51 T 11-10-2018 IPR011032 GroES-like superfamily APJL_2006 1eaa4db5d8c6a7ed4f4371caec3b6b50 349 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 11-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 APJL_2006 1eaa4db5d8c6a7ed4f4371caec3b6b50 349 Gene3D G3DSA:3.90.180.10 30 336 4.6E-120 T 11-10-2018 APJL_2006 1eaa4db5d8c6a7ed4f4371caec3b6b50 349 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 136 2.3E-30 T 11-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 APJL_0158 38e3c8fd2046a0bb583cb687b8e639f4 81 Pfam PF04400 (Na+)-NQR maturation NqrM 23 62 9.4E-19 T 11-10-2018 IPR007495 (Na+)-NQR maturation factor NqrM APJL_0553 b10df5e2ce041c81f6db49ee35a97c89 666 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 193 382 3.2E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0553 b10df5e2ce041c81f6db49ee35a97c89 666 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 482 659 6.0E-14 T 11-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 APJL_0553 b10df5e2ce041c81f6db49ee35a97c89 666 Gene3D G3DSA:1.10.3720.10 408 665 1.9E-42 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0553 b10df5e2ce041c81f6db49ee35a97c89 666 Gene3D G3DSA:1.10.3720.10 128 391 5.5E-49 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0553 b10df5e2ce041c81f6db49ee35a97c89 666 SUPERFAMILY SSF161098 139 379 3.4E-41 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0553 b10df5e2ce041c81f6db49ee35a97c89 666 SUPERFAMILY SSF161098 416 655 3.14E-42 T 11-10-2018 IPR035906 MetI-like superfamily APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 Pfam PF00005 ABC transporter 359 509 5.6E-36 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 Pfam PF00664 ABC transporter transmembrane region 28 297 2.5E-58 T 11-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 11 581 1.4E-239 T 11-10-2018 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 Gene3D G3DSA:1.20.1560.10 2 328 9.3E-81 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 SUPERFAMILY SSF52540 333 580 1.43E-94 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 SUPERFAMILY SSF90123 7 327 4.58E-73 T 11-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 Gene3D G3DSA:3.40.50.300 329 581 1.7E-96 T 11-10-2018 APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 SMART SM00382 368 555 1.1E-19 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_0781 e2c3a9c7d2d98d1e462fde93a11513c7 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_1639 09d58a04e94f07b2a121c8bc2d5f994b 164 Pfam PF01814 Hemerythrin HHE cation binding domain 24 158 2.8E-25 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 APJL_1639 09d58a04e94f07b2a121c8bc2d5f994b 164 Gene3D G3DSA:1.20.120.520 11 162 5.3E-29 T 11-10-2018 APJL_0267 57b8ff69bc75ce698e4147c6cb5d887a 144 SUPERFAMILY SSF55961 1 143 2.96E-33 T 11-10-2018 APJL_0267 57b8ff69bc75ce698e4147c6cb5d887a 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 135 5.3E-32 T 11-10-2018 IPR005031 Coenzyme Q-binding protein COQ10, START domain Reactome: R-HSA-611105 APJL_0267 57b8ff69bc75ce698e4147c6cb5d887a 144 Gene3D G3DSA:3.30.530.20 4 144 2.2E-40 T 11-10-2018 IPR023393 START-like domain superfamily APJL_0593 2856ab4939c4aca78347fe37130caa94 132 PIRSF PIRSF006318 2 132 1.2E-50 T 11-10-2018 IPR009386 Protein of unknown function DUF1043 APJL_0593 2856ab4939c4aca78347fe37130caa94 132 Pfam PF06295 Protein of unknown function (DUF1043) 14 129 7.7E-43 T 11-10-2018 IPR009386 Protein of unknown function DUF1043 APJL_1615 eb43457d227ae5706082a25b754a5c8d 395 Gene3D G3DSA:3.30.1950.10 90 178 6.9E-61 T 11-10-2018 APJL_1615 eb43457d227ae5706082a25b754a5c8d 395 Gene3D G3DSA:3.10.560.10 184 258 6.9E-61 T 11-10-2018 APJL_1615 eb43457d227ae5706082a25b754a5c8d 395 Pfam PF02563 Polysaccharide biosynthesis/export protein 88 174 1.7E-14 T 11-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 APJL_1615 eb43457d227ae5706082a25b754a5c8d 395 Gene3D G3DSA:3.10.560.10 259 363 6.9E-61 T 11-10-2018 APJL_0684 8386db2f23fc61f38311e492ae9dab61 134 Pfam PF04241 Protein of unknown function (DUF423) 19 113 1.5E-26 T 11-10-2018 IPR006696 Protein of unknown function DUF423 APJL_1236 12450da356e5a5ac553932d2d76bb36d 431 Pfam PF00860 Permease family 18 392 4.9E-40 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 APJL_1236 12450da356e5a5ac553932d2d76bb36d 431 PIRSF PIRSF005353 1 431 1.1E-167 T 11-10-2018 IPR026033 Purine permease PbuG-like APJL_1412 7871f573725ee375b7981e1d12abc1c5 278 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 7 276 5.7E-110 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 APJL_1412 7871f573725ee375b7981e1d12abc1c5 278 TIGRFAM TIGR00828 EIID-AGA: PTS system, mannose/fructose/sorbose family, IID component 6 277 1.2E-132 T 11-10-2018 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 APJL_1284 7cc73e53c499cf8bb7e5858747a71876 182 SMART SM00028 107 140 24.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1284 7cc73e53c499cf8bb7e5858747a71876 182 SMART SM00028 39 72 4.4E-4 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1284 7cc73e53c499cf8bb7e5858747a71876 182 SMART SM00028 73 106 13.0 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1284 7cc73e53c499cf8bb7e5858747a71876 182 Pfam PF13181 Tetratricopeptide repeat 79 105 0.028 T 11-10-2018 IPR019734 Tetratricopeptide repeat GO:0005515 APJL_1284 7cc73e53c499cf8bb7e5858747a71876 182 SUPERFAMILY SSF48452 39 170 1.43E-18 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1284 7cc73e53c499cf8bb7e5858747a71876 182 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 12 181 2.1E-58 T 11-10-2018 IPR013360 Pilus biogenesis/stability type IV, PilW APJL_1284 7cc73e53c499cf8bb7e5858747a71876 182 Gene3D G3DSA:1.25.40.10 35 182 7.6E-24 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0039 37e0d9ba9836e816c1fe13ab766be7b4 198 SUPERFAMILY SSF54593 1 194 7.87E-66 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APJL_0039 37e0d9ba9836e816c1fe13ab766be7b4 198 Pfam PF06185 YecM protein 12 194 3.5E-67 T 11-10-2018 IPR010393 Protein of unknown function DUF991 APJL_0039 37e0d9ba9836e816c1fe13ab766be7b4 198 Gene3D G3DSA:3.10.180.10 1 197 7.9E-56 T 11-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase APJL_2047 a5e6ab4d64b48afdbefc82b06b2bc246 111 Pfam PF00829 Ribosomal prokaryotic L21 protein 9 109 1.3E-38 T 11-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2047 a5e6ab4d64b48afdbefc82b06b2bc246 111 SUPERFAMILY SSF141091 9 110 2.35E-37 T 11-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2047 a5e6ab4d64b48afdbefc82b06b2bc246 111 ProSitePatterns PS01169 Ribosomal protein L21 signature. 80 102 - T 11-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 APJL_2047 a5e6ab4d64b48afdbefc82b06b2bc246 111 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 9 111 27.098 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_2047 a5e6ab4d64b48afdbefc82b06b2bc246 111 TIGRFAM TIGR00061 L21: ribosomal protein bL21 10 110 6.8E-45 T 11-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 APJL_1432 23f1af75e2f23b6b9d2c8a775224a351 296 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 20 296 48.731 T 11-10-2018 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 APJL_1432 23f1af75e2f23b6b9d2c8a775224a351 296 Pfam PF02666 Phosphatidylserine decarboxylase 73 293 1.2E-58 T 11-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 APJL_1432 23f1af75e2f23b6b9d2c8a775224a351 296 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 59 295 3.6E-91 T 11-10-2018 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 APJL_1985 8578ab729ec3b418ac2eeaf42690a690 110 SUPERFAMILY SSF54211 2 107 1.14E-27 T 11-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold APJL_1985 8578ab729ec3b418ac2eeaf42690a690 110 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 7 90 5.0E-36 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APJL_1985 8578ab729ec3b418ac2eeaf42690a690 110 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 104 3.1E-31 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APJL_1985 8578ab729ec3b418ac2eeaf42690a690 110 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 1 104 12.234 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APJL_1985 8578ab729ec3b418ac2eeaf42690a690 110 ProSitePatterns PS00648 Bacterial ribonuclease P protein component signature. 45 59 - T 11-10-2018 IPR020539 Ribonuclease P, conserved site GO:0004526 APJL_1985 8578ab729ec3b418ac2eeaf42690a690 110 Pfam PF00825 Ribonuclease P 1 100 2.7E-28 T 11-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 APJL_1985 8578ab729ec3b418ac2eeaf42690a690 110 Gene3D G3DSA:3.30.230.10 1 108 7.1E-37 T 11-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup APJL_1037 dc7efbabc16a793671342eb20b359f23 304 SUPERFAMILY SSF53613 3 291 1.27E-68 T 11-10-2018 IPR029056 Ribokinase-like APJL_1037 dc7efbabc16a793671342eb20b359f23 304 Pfam PF00294 pfkB family carbohydrate kinase 10 290 1.0E-64 T 11-10-2018 IPR011611 Carbohydrate kinase PfkB APJL_1037 dc7efbabc16a793671342eb20b359f23 304 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 - T 11-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 APJL_1037 dc7efbabc16a793671342eb20b359f23 304 Gene3D G3DSA:3.40.1190.20 1 299 2.7E-76 T 11-10-2018 IPR029056 Ribokinase-like APJL_0792 85bb49e757a9ec6612becbc12ae5c97b 430 Pfam PF13173 AAA domain 18 152 1.1E-28 T 11-10-2018 APJL_0792 85bb49e757a9ec6612becbc12ae5c97b 430 Pfam PF13635 Domain of unknown function (DUF4143) 221 383 1.1E-23 T 11-10-2018 IPR025420 Domain of unknown function DUF4143 APJL_0792 85bb49e757a9ec6612becbc12ae5c97b 430 SUPERFAMILY SSF52540 3 213 3.49E-18 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0947 27d62de42d4aaca5ed4e686dd52ee4e7 180 SMART SM00463 89 167 3.5E-16 T 11-10-2018 IPR002625 Smr domain APJL_0947 27d62de42d4aaca5ed4e686dd52ee4e7 180 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 168 37.97 T 11-10-2018 IPR022990 Uncharacterised protein family UPF0115 APJL_0947 27d62de42d4aaca5ed4e686dd52ee4e7 180 Gene3D G3DSA:3.30.1370.110 42 171 1.8E-24 T 11-10-2018 APJL_0947 27d62de42d4aaca5ed4e686dd52ee4e7 180 Pfam PF01713 Smr domain 92 165 1.2E-15 T 11-10-2018 IPR002625 Smr domain APJL_0947 27d62de42d4aaca5ed4e686dd52ee4e7 180 SUPERFAMILY SSF160443 90 163 2.22E-10 T 11-10-2018 IPR036063 Smr domain superfamily APJL_1112 189cef8749054cd21632756a48f32f4e 140 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 3 117 6.2E-31 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 APJL_1112 189cef8749054cd21632756a48f32f4e 140 PIRSF PIRSF006113 1 95 2.2E-21 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 APJL_1112 189cef8749054cd21632756a48f32f4e 140 PIRSF PIRSF006113 90 140 2.5E-4 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 APJL_1112 189cef8749054cd21632756a48f32f4e 140 Gene3D G3DSA:3.30.479.10 1 140 6.5E-34 T 11-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 APJL_1112 189cef8749054cd21632756a48f32f4e 140 SUPERFAMILY SSF55620 1 139 7.23E-36 T 11-10-2018 APJL_1112 189cef8749054cd21632756a48f32f4e 140 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 139 1.1E-34 T 11-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 APJL_1791 6a4ebbff79b823847f0ddbebcbd9ee21 381 Gene3D G3DSA:2.30.40.10 7 375 2.4E-124 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APJL_1791 6a4ebbff79b823847f0ddbebcbd9ee21 381 SUPERFAMILY SSF51338 3 54 1.97E-15 T 11-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 APJL_1791 6a4ebbff79b823847f0ddbebcbd9ee21 381 PIRSF PIRSF038994 1 380 5.7E-110 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 APJL_1791 6a4ebbff79b823847f0ddbebcbd9ee21 381 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 375 1.1E-155 T 11-10-2018 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 APJL_1791 6a4ebbff79b823847f0ddbebcbd9ee21 381 SUPERFAMILY SSF51556 55 349 4.29E-94 T 11-10-2018 IPR032466 Metal-dependent hydrolase APJL_1791 6a4ebbff79b823847f0ddbebcbd9ee21 381 Pfam PF01979 Amidohydrolase family 52 376 1.6E-42 T 11-10-2018 IPR006680 Amidohydrolase-related GO:0016787 APJL_1791 6a4ebbff79b823847f0ddbebcbd9ee21 381 Gene3D G3DSA:3.20.20.140 56 343 2.4E-124 T 11-10-2018 APJL_0465 f893116d64938ee35634faf0ef45df98 261 Gene3D G3DSA:1.10.3470.10 29 261 4.6E-7 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_0465 f893116d64938ee35634faf0ef45df98 261 Pfam PF00950 ABC 3 transport family 1 257 2.5E-80 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 APJL_0465 f893116d64938ee35634faf0ef45df98 261 SUPERFAMILY SSF81345 2 257 2.35E-38 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_1491 a8c194483c9adf25adba3bf7820ab686 483 Pfam PF01943 Polysaccharide biosynthesis protein 9 272 5.9E-29 T 11-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 APJL_1491 a8c194483c9adf25adba3bf7820ab686 483 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 328 466 1.8E-15 T 11-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain APJL_1144 2e691549c2f4635a915d106030b68d6b 400 Pfam PF00266 Aminotransferase class-V 24 387 7.4E-121 T 11-10-2018 IPR000192 Aminotransferase class V domain APJL_1144 2e691549c2f4635a915d106030b68d6b 400 Gene3D G3DSA:3.40.640.10 34 291 1.1E-125 T 11-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 APJL_1144 2e691549c2f4635a915d106030b68d6b 400 Gene3D G3DSA:3.90.1150.10 10 391 1.1E-125 T 11-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 APJL_1144 2e691549c2f4635a915d106030b68d6b 400 SUPERFAMILY SSF53383 6 392 4.36E-96 T 11-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase APJL_0485 8bec798c713a0ef6053b3f1516422d17 231 Pfam PF13098 Thioredoxin-like domain 106 229 8.3E-23 T 11-10-2018 IPR012336 Thioredoxin-like fold APJL_0485 8bec798c713a0ef6053b3f1516422d17 231 SUPERFAMILY SSF52833 87 230 6.77E-36 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0485 8bec798c713a0ef6053b3f1516422d17 231 Gene3D G3DSA:3.40.30.10 73 231 3.6E-44 T 11-10-2018 APJL_0485 8bec798c713a0ef6053b3f1516422d17 231 SUPERFAMILY SSF54423 24 82 1.12E-12 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 APJL_0485 8bec798c713a0ef6053b3f1516422d17 231 Pfam PF10411 Disulfide bond isomerase protein N-terminus 30 79 2.1E-9 T 11-10-2018 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal APJL_0485 8bec798c713a0ef6053b3f1516422d17 231 Gene3D G3DSA:3.10.450.70 24 72 1.1E-8 T 11-10-2018 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily GO:0042597 APJL_0543 da5ed10a8b0cfc6df01a02decad3632e 281 Pfam PF00482 Type II secretion system (T2SS), protein F 141 269 2.9E-16 T 11-10-2018 IPR018076 Type II secretion system F domain APJL_1437 79a4a19375853428998c37cb84943ac7 266 Gene3D G3DSA:1.10.443.10 88 265 7.3E-32 T 11-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 APJL_1437 79a4a19375853428998c37cb84943ac7 266 Pfam PF13495 Phage integrase, N-terminal SAM-like domain 4 76 1.4E-6 T 11-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 APJL_1437 79a4a19375853428998c37cb84943ac7 266 SUPERFAMILY SSF56349 6 262 1.32E-42 T 11-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 APJL_1437 79a4a19375853428998c37cb84943ac7 266 Pfam PF00589 Phage integrase family 108 253 2.0E-25 T 11-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 APJL_1437 79a4a19375853428998c37cb84943ac7 266 Gene3D G3DSA:1.10.150.130 1 79 5.4E-12 T 11-10-2018 IPR010998 Integrase/recombinase, N-terminal APJL_0372 84e893489c4447e2e37deae81168c1d0 398 SUPERFAMILY SSF103473 4 394 3.53E-58 T 11-10-2018 IPR036259 MFS transporter superfamily APJL_0372 84e893489c4447e2e37deae81168c1d0 398 Pfam PF07690 Major Facilitator Superfamily 16 357 3.0E-40 T 11-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 APJL_0372 84e893489c4447e2e37deae81168c1d0 398 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 10 390 2.2E-119 T 11-10-2018 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0006855|GO:0015238|GO:0016021 APJL_0372 84e893489c4447e2e37deae81168c1d0 398 Gene3D G3DSA:1.20.1720.10 10 389 1.1E-88 T 11-10-2018 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 Pfam PF00654 Voltage gated chloride channel 37 388 2.4E-71 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 SUPERFAMILY SSF81340 2 407 1.01E-87 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 Gene3D G3DSA:1.10.3080.10 1 423 6.1E-79 T 11-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 PRINTS PR00762 Chloride channel signature 140 159 2.6E-25 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 PRINTS PR00762 Chloride channel signature 338 354 2.6E-25 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 PRINTS PR00762 Chloride channel signature 308 328 2.6E-25 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 PRINTS PR00762 Chloride channel signature 356 375 2.6E-25 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 PRINTS PR00762 Chloride channel signature 50 67 2.6E-25 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APJL_0669 7f9cb3d0372d76f08ba65085945dba23 426 PRINTS PR00762 Chloride channel signature 84 103 2.6E-25 T 11-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 APJL_1938 63dc5953db9aae7278f4a909a30af981 264 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 257 7.0E-78 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 APJL_1938 63dc5953db9aae7278f4a909a30af981 264 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 1 263 4.6E-92 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 APJL_1938 63dc5953db9aae7278f4a909a30af981 264 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 APJL_1938 63dc5953db9aae7278f4a909a30af981 264 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 262 19.437 T 11-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 APJL_1826 ac92049871efb50fbb7d4d6818b97f47 397 SMART SM00558 97 222 8.0E-11 T 11-10-2018 IPR003347 JmjC domain APJL_1826 ac92049871efb50fbb7d4d6818b97f47 397 SUPERFAMILY SSF51197 7 288 2.88E-62 T 11-10-2018 APJL_1826 ac92049871efb50fbb7d4d6818b97f47 397 Pfam PF08007 Cupin superfamily protein 13 321 8.2E-92 T 11-10-2018 IPR003347 JmjC domain APJL_1826 ac92049871efb50fbb7d4d6818b97f47 397 Gene3D G3DSA:2.60.120.650 1 211 6.9E-67 T 11-10-2018 APJL_1826 ac92049871efb50fbb7d4d6818b97f47 397 Gene3D G3DSA:1.10.10.2510 212 394 8.1E-14 T 11-10-2018 APJL_1150 58c828138b4de3c4deef885bb05b3763 449 Pfam PF04932 O-Antigen ligase 218 370 1.1E-24 T 11-10-2018 IPR007016 O-antigen ligase-related APJL_0235 c6b724743298986bf9ac9035e0e12b32 210 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 204 1.7E-49 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APJL_0235 c6b724743298986bf9ac9035e0e12b32 210 Gene3D G3DSA:3.40.50.1240 1 210 1.3E-52 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APJL_0235 c6b724743298986bf9ac9035e0e12b32 210 PIRSF PIRSF000709 2 176 1.3E-20 T 11-10-2018 APJL_0235 c6b724743298986bf9ac9035e0e12b32 210 SMART SM00855 4 162 1.5E-21 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APJL_0235 c6b724743298986bf9ac9035e0e12b32 210 SUPERFAMILY SSF53254 2 209 2.2E-53 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APJL_0648 9c91416914a11f9a1ab980294b7061ec 214 SUPERFAMILY SSF47616 82 206 4.97E-21 T 11-10-2018 IPR036282 Glutathione S-transferase, C-terminal domain superfamily APJL_0648 9c91416914a11f9a1ab980294b7061ec 214 SUPERFAMILY SSF52833 7 90 2.28E-23 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_0648 9c91416914a11f9a1ab980294b7061ec 214 Pfam PF00043 Glutathione S-transferase, C-terminal domain 103 195 7.3E-8 T 11-10-2018 IPR004046 Glutathione S-transferase, C-terminal APJL_0648 9c91416914a11f9a1ab980294b7061ec 214 Gene3D G3DSA:3.40.30.10 11 201 6.6E-75 T 11-10-2018 APJL_0648 9c91416914a11f9a1ab980294b7061ec 214 Pfam PF02798 Glutathione S-transferase, N-terminal domain 10 81 3.2E-17 T 11-10-2018 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 APJL_0648 9c91416914a11f9a1ab980294b7061ec 214 Gene3D G3DSA:1.20.1050.10 89 194 6.6E-75 T 11-10-2018 APJL_2029 dc8106f10b48b5429a89a00d9f70e305 317 Pfam PF01544 CorA-like Mg2+ transporter protein 25 313 4.6E-57 T 11-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 APJL_2029 dc8106f10b48b5429a89a00d9f70e305 317 SUPERFAMILY SSF144083 252 315 8.37E-21 T 11-10-2018 APJL_2029 dc8106f10b48b5429a89a00d9f70e305 317 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 5 317 7.0E-104 T 11-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 APJL_2029 dc8106f10b48b5429a89a00d9f70e305 317 Gene3D G3DSA:1.20.58.340 241 317 3.7E-26 T 11-10-2018 APJL_2029 dc8106f10b48b5429a89a00d9f70e305 317 SUPERFAMILY SSF143865 1 256 1.57E-35 T 11-10-2018 APJL_1875 c4053541c9184e3dbe5cb5393f34645f 130 Pfam PF13957 Toxin YafO, type II toxin-antitoxin system 2 101 2.7E-21 T 11-10-2018 IPR020353 mRNA interferase toxin YafO APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 SUPERFAMILY SSF51726 392 753 2.09E-119 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 Gene3D G3DSA:3.20.20.210 6 520 0.0 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 5 307 1.9E-125 T 11-10-2018 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 SUPERFAMILY SSF51726 5 389 4.06E-106 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 Gene3D G3DSA:3.20.20.210 385 752 0.0 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 PIRSF PIRSF000382 1 757 0.0 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 427 749 3.7E-159 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 754 37.177 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APJL_1175 c4c2716795ee634c7b15ceee81f37f04 757 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 754 0.0 T 11-10-2018 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APJL_0518 dbde8a161e6717a5375a04e343c5c9de 213 Pfam PF06226 Protein of unknown function (DUF1007) 8 212 9.6E-53 T 11-10-2018 IPR010412 Protein of unknown function DUF1007 APJL_0518 dbde8a161e6717a5375a04e343c5c9de 213 PIRSF PIRSF008159 1 213 6.6E-58 T 11-10-2018 IPR016537 Uncharacterised conserved protein UCP008159, APJL_0794 7f983f7b0e81c9fdf065741b13cf3b96 324 Pfam PF03060 Nitronate monooxygenase 6 322 4.7E-61 T 11-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 APJL_0794 7f983f7b0e81c9fdf065741b13cf3b96 324 Gene3D G3DSA:3.20.20.70 2 324 1.3E-74 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0794 7f983f7b0e81c9fdf065741b13cf3b96 324 SUPERFAMILY SSF51412 6 323 6.04E-47 T 11-10-2018 APJL_1307 cb7879c8b1ad73d58f1612766778b41a 295 Pfam PF08338 Domain of unknown function (DUF1731) 249 289 1.1E-14 T 11-10-2018 IPR013549 Domain of unknown function DUF1731 APJL_1307 cb7879c8b1ad73d58f1612766778b41a 295 SUPERFAMILY SSF51735 1 288 5.72E-40 T 11-10-2018 IPR036291 NAD(P)-binding domain superfamily APJL_1307 cb7879c8b1ad73d58f1612766778b41a 295 Gene3D G3DSA:3.40.50.720 1 286 2.4E-71 T 11-10-2018 APJL_1307 cb7879c8b1ad73d58f1612766778b41a 295 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 221 5.9E-20 T 11-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 APJL_1307 cb7879c8b1ad73d58f1612766778b41a 295 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 289 5.9E-99 T 11-10-2018 IPR010099 Epimerase family protein SDR39U1 APJL_0306 e3154d8b1fc1aeabd7dd08a02bf5319e 254 Pfam PF00899 ThiF family 18 222 4.3E-39 T 11-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 APJL_0306 e3154d8b1fc1aeabd7dd08a02bf5319e 254 Gene3D G3DSA:3.40.50.720 2 254 6.8E-103 T 11-10-2018 APJL_0306 e3154d8b1fc1aeabd7dd08a02bf5319e 254 SUPERFAMILY SSF69572 7 253 4.19E-66 T 11-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 APJL_0605 f921582bc9d36c5fcfb4e08751f1ae65 174 Gene3D G3DSA:3.90.1720.10 55 174 6.3E-41 T 11-10-2018 APJL_0605 f921582bc9d36c5fcfb4e08751f1ae65 174 SUPERFAMILY SSF54001 54 174 2.09E-40 T 11-10-2018 IPR038765 Papain-like cysteine peptidase superfamily APJL_0605 f921582bc9d36c5fcfb4e08751f1ae65 174 Pfam PF00877 NlpC/P60 family 67 173 5.9E-32 T 11-10-2018 IPR000064 Endopeptidase, NLPC/P60 domain APJL_1200 9fe0625f858e38b6ba2dc70a77020c62 518 Pfam PF00916 Sulfate permease family 11 381 1.4E-57 T 11-10-2018 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 APJL_2077 2260393ff293db4a0602d78463695511 248 Pfam PF00977 Histidine biosynthesis protein 1 230 4.1E-71 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 APJL_2077 2260393ff293db4a0602d78463695511 248 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 247 2.4E-108 T 11-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 APJL_2077 2260393ff293db4a0602d78463695511 248 SUPERFAMILY SSF51366 1 247 5.02E-64 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_2077 2260393ff293db4a0602d78463695511 248 Gene3D G3DSA:3.20.20.70 1 248 3.5E-87 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_1827 c63300fe07d30ce64774b114c20dfa68 371 Gene3D G3DSA:3.40.50.1980 26 367 1.0E-94 T 11-10-2018 APJL_1827 c63300fe07d30ce64774b114c20dfa68 371 SUPERFAMILY SSF53807 28 339 1.14E-51 T 11-10-2018 APJL_1827 c63300fe07d30ce64774b114c20dfa68 371 Pfam PF01497 Periplasmic binding protein 67 315 2.6E-42 T 11-10-2018 IPR002491 ABC transporter periplasmic binding domain APJL_2063 917df2e8c9fc9087c514bc0a20ceae9b 254 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 APJL_2063 917df2e8c9fc9087c514bc0a20ceae9b 254 SMART SM00382 26 214 1.6E-10 T 11-10-2018 IPR003593 AAA+ ATPase domain APJL_2063 917df2e8c9fc9087c514bc0a20ceae9b 254 SUPERFAMILY SSF52540 4 232 1.28E-57 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_2063 917df2e8c9fc9087c514bc0a20ceae9b 254 Pfam PF00005 ABC transporter 17 165 1.5E-31 T 11-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 APJL_2063 917df2e8c9fc9087c514bc0a20ceae9b 254 Gene3D G3DSA:3.40.50.300 1 254 1.0E-65 T 11-10-2018 APJL_0897 3b7a60fbe29c3eca5435f1fdf3e72258 258 Pfam PF01925 Sulfite exporter TauE/SafE 12 246 1.2E-41 T 11-10-2018 IPR002781 Transmembrane protein TauE-like GO:0016021 APJL_0529 9b8cf691463d703027076f4e7ba1ea51 266 Gene3D G3DSA:3.40.190.10 106 206 5.8E-70 T 11-10-2018 APJL_0529 9b8cf691463d703027076f4e7ba1ea51 266 Pfam PF09084 NMT1/THI5 like 34 246 5.1E-72 T 11-10-2018 IPR015168 SsuA/THI5-like APJL_0529 9b8cf691463d703027076f4e7ba1ea51 266 SUPERFAMILY SSF53850 27 262 7.53E-40 T 11-10-2018 APJL_0529 9b8cf691463d703027076f4e7ba1ea51 266 Gene3D G3DSA:3.40.190.10 24 264 5.8E-70 T 11-10-2018 APJL_1910 36830d14da3005f50fc011fdc3ae1409 89 Gene3D G3DSA:1.10.1580.20 1 89 1.3E-39 T 11-10-2018 IPR038134 YihD-like superfamily APJL_1910 36830d14da3005f50fc011fdc3ae1409 89 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 7.0E-33 T 11-10-2018 IPR009383 Protein of unknown function DUF1040 APJL_1910 36830d14da3005f50fc011fdc3ae1409 89 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 5.4E-41 T 11-10-2018 IPR009383 Protein of unknown function DUF1040 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 Pfam PF14697 4Fe-4S dicluster domain 109 163 9.2E-17 T 11-10-2018 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 7 168 24.67 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 Gene3D G3DSA:1.10.15.40 40 82 2.6E-6 T 11-10-2018 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 Gene3D G3DSA:3.30.70.20 91 181 2.3E-21 T 11-10-2018 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 Pfam PF04060 Putative Fe-S cluster 47 78 4.3E-13 T 11-10-2018 IPR007202 4Fe-4S domain GO:0051536 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 SUPERFAMILY SSF54862 40 175 8.64E-30 T 11-10-2018 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 PIRSF PIRSF005784 6 190 2.5E-81 T 11-10-2018 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 7 182 1.3E-78 T 11-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 APJL_0167 8d5478060019a9ce158b8e3d567bbad0 203 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 146 157 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_0300 e504371aecd26f6b49ca98cda3e5934d 98 Pfam PF07751 Abi-like protein 33 98 3.6E-17 T 11-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like APJL_0036 3e61473f674a5d55d96fdf133325fd8d 145 Pfam PF04191 Phospholipid methyltransferase 32 132 6.5E-14 T 11-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 APJL_0036 3e61473f674a5d55d96fdf133325fd8d 145 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 103 145 2.0E-8 T 11-10-2018 APJL_0036 3e61473f674a5d55d96fdf133325fd8d 145 Gene3D G3DSA:1.20.120.1630 5 145 1.4E-22 T 11-10-2018 APJL_0614 44e81b3d533a01c1ca530b1376944f70 287 SUPERFAMILY SSF55486 55 178 4.4E-5 T 11-10-2018 APJL_0614 44e81b3d533a01c1ca530b1376944f70 287 Pfam PF04228 Putative neutral zinc metallopeptidase 1 284 8.0E-121 T 11-10-2018 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative APJL_0051 280d9417ba92eb1bee3db6bed4c01bcc 178 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 7 120 1.1E-15 T 11-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 APJL_0051 280d9417ba92eb1bee3db6bed4c01bcc 178 Gene3D G3DSA:3.40.50.1000 2 178 2.8E-52 T 11-10-2018 IPR023214 HAD superfamily APJL_0051 280d9417ba92eb1bee3db6bed4c01bcc 178 Pfam PF08282 haloacid dehalogenase-like hydrolase 80 140 2.1E-10 T 11-10-2018 APJL_0051 280d9417ba92eb1bee3db6bed4c01bcc 178 SUPERFAMILY SSF56784 4 161 3.94E-40 T 11-10-2018 IPR036412 HAD-like superfamily APJL_0051 280d9417ba92eb1bee3db6bed4c01bcc 178 PIRSF PIRSF006118 1 167 1.8E-61 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APJL_0051 280d9417ba92eb1bee3db6bed4c01bcc 178 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 6 157 1.4E-42 T 11-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 APJL_0056 756ae1f009260f22c2c2306c18cf4ede 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 8.7E-34 T 11-10-2018 IPR013551 Domain of unknown function DUF1732 APJL_0056 756ae1f009260f22c2c2306c18cf4ede 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 1.9E-41 T 11-10-2018 IPR013527 YicC-like, N-terminal APJL_0056 756ae1f009260f22c2c2306c18cf4ede 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 1.3E-119 T 11-10-2018 IPR005229 Conserved hypothetical protein CHP00255 APJL_0814 0c77ef2b772af6fb292975860bda50b4 114 PIRSF PIRSF021239 1 114 7.0E-41 T 11-10-2018 IPR007437 Protein of unknown function DUF486 APJL_0814 0c77ef2b772af6fb292975860bda50b4 114 Pfam PF04342 Putative member of DMT superfamily (DUF486) 7 112 1.8E-41 T 11-10-2018 IPR007437 Protein of unknown function DUF486 APJL_0721 8800bd66a54a505abaee3506210929c6 75 SUPERFAMILY SSF64307 4 74 6.28E-19 T 11-10-2018 IPR036868 TusA-like domain superfamily APJL_0721 8800bd66a54a505abaee3506210929c6 75 Pfam PF01206 Sulfurtransferase TusA 6 74 2.2E-17 T 11-10-2018 IPR001455 TusA-like domain APJL_0721 8800bd66a54a505abaee3506210929c6 75 Gene3D G3DSA:3.30.110.40 2 75 1.9E-15 T 11-10-2018 IPR036868 TusA-like domain superfamily APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 Gene3D G3DSA:3.40.50.1240 1 227 1.7E-80 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 PIRSF PIRSF000709 172 222 13.0 T 11-10-2018 APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 PIRSF PIRSF000709 2 112 2.2E-5 T 11-10-2018 APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 1 227 1.5E-113 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 1 227 42.218 T 11-10-2018 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484 APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 122 4.6E-27 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 134 219 2.9E-6 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 SUPERFAMILY SSF53254 1 220 1.33E-70 T 11-10-2018 IPR029033 Histidine phosphatase superfamily APJL_0840 6f61bc7ffa7d1b5691281d8042b7fdca 227 SMART SM00855 2 188 6.0E-23 T 11-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 APJL_0492 5e4053f2cdd0367f50fbe8345b8a6e19 106 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 24.405 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 APJL_0492 5e4053f2cdd0367f50fbe8345b8a6e19 106 Gene3D G3DSA:3.30.110.70 2 106 1.2E-40 T 11-10-2018 APJL_0492 5e4053f2cdd0367f50fbe8345b8a6e19 106 Pfam PF01906 Putative heavy-metal-binding 1 105 2.2E-39 T 11-10-2018 IPR002765 Uncharacterised protein family UPF0145 APJL_0492 5e4053f2cdd0367f50fbe8345b8a6e19 106 SUPERFAMILY SSF117782 1 105 4.71E-37 T 11-10-2018 IPR035439 UPF0145 domain superfamily APJL_1976 4e46cc48313fa13d36637e9af7134746 191 Gene3D G3DSA:3.10.350.10 145 191 1.9E-8 T 11-10-2018 IPR036779 LysM domain superfamily APJL_1976 4e46cc48313fa13d36637e9af7134746 191 SUPERFAMILY SSF54106 147 190 2.75E-7 T 11-10-2018 APJL_1976 4e46cc48313fa13d36637e9af7134746 191 SMART SM00257 147 191 1.0E-4 T 11-10-2018 IPR018392 LysM domain APJL_1976 4e46cc48313fa13d36637e9af7134746 191 Pfam PF01476 LysM domain 148 190 9.0E-7 T 11-10-2018 IPR018392 LysM domain APJL_0894 53a0c21fc78cdcad4bbdbf89123459f9 77 ProDom PD058023 TRANSMEMBRANE SO1069 MEMBRANE VCA0743 SO4196 VVA0623 VPA0666 HI1736 PM0424 1 65 8.0E-17 T 11-10-2018 IPR020137 Uncharacterised protein family HI1736 APJL_0894 53a0c21fc78cdcad4bbdbf89123459f9 77 Pfam PF10688 Bacterial inner membrane protein 3 68 1.2E-7 T 11-10-2018 IPR019629 Uncharacterised protein family HI1736/YgjV APJL_0894 53a0c21fc78cdcad4bbdbf89123459f9 77 Gene3D G3DSA:1.20.1280.290 25 74 1.4E-5 T 11-10-2018 APJL_1222 7f08fbf50a0c8dbbe34f4fedf41e1cf7 675 ProSitePatterns PS01303 BCCT family of transporters signature. 319 328 - T 11-10-2018 IPR018093 BCCT transporter, conserved site APJL_1222 7f08fbf50a0c8dbbe34f4fedf41e1cf7 675 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 55 502 6.3E-168 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 APJL_1222 7f08fbf50a0c8dbbe34f4fedf41e1cf7 675 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 17 500 9.3E-175 T 11-10-2018 IPR000060 BCCT transporter family GO:0016020|GO:0022857|GO:0071705 APJL_0296 2247599cfcf68bc9a59bf6572de1585b 245 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 19 245 36.643 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 APJL_0296 2247599cfcf68bc9a59bf6572de1585b 245 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 19 241 3.4E-90 T 11-10-2018 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 APJL_0296 2247599cfcf68bc9a59bf6572de1585b 245 Pfam PF13489 Methyltransferase domain 60 214 1.7E-25 T 11-10-2018 APJL_0296 2247599cfcf68bc9a59bf6572de1585b 245 SUPERFAMILY SSF53335 21 240 3.07E-50 T 11-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase APJL_0296 2247599cfcf68bc9a59bf6572de1585b 245 Gene3D G3DSA:3.40.50.150 19 245 6.4E-77 T 11-10-2018 APJL_1469 d4c4c2e24efb0d8377d0462ab74dd96a 335 Gene3D G3DSA:3.90.640.20 226 318 3.8E-21 T 11-10-2018 IPR037126 PdaC/RsiV-like superfamily APJL_1469 d4c4c2e24efb0d8377d0462ab74dd96a 335 Pfam PF11738 Protein of unknown function (DUF3298) 229 304 7.5E-11 T 11-10-2018 IPR021729 Domain of unknown function DUF3298 APJL_1469 d4c4c2e24efb0d8377d0462ab74dd96a 335 Gene3D G3DSA:3.30.565.40 82 225 8.3E-9 T 11-10-2018 APJL_1925 c16b97a4f4490b8096c6b111b062c211 250 SUPERFAMILY SSF53474 3 246 2.27E-25 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1925 c16b97a4f4490b8096c6b111b062c211 250 Pfam PF00756 Putative esterase 11 239 4.4E-17 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 APJL_1925 c16b97a4f4490b8096c6b111b062c211 250 Gene3D G3DSA:3.40.50.1820 1 248 3.9E-31 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_0308 c56bd29b5c336b1330d0e0421e39221c 516 PIRSF PIRSF006446 337 515 1.9E-28 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APJL_0308 c56bd29b5c336b1330d0e0421e39221c 516 PIRSF PIRSF006446 1 332 3.2E-119 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APJL_0308 c56bd29b5c336b1330d0e0421e39221c 516 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 2.2E-171 T 11-10-2018 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0009055|GO:0019646|GO:0070069 APJL_1490 40f7302e11e3692d776d7b5bef703617 443 ProDom PD140121 POLYMERASE O-ANTIGEN TRANSMEMBRANE POLYSACCHARIDE WZY REPEAT MEMBRANE UNIT OLIGOSACCHARIDE CPS6AI 207 401 6.0E-9 T 11-10-2018 APJL_1490 40f7302e11e3692d776d7b5bef703617 443 TIGRFAM TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase 20 425 5.8E-61 T 11-10-2018 APJL_1219 7387d0c5702063d33ad6e9ed06c8995b 139 Gene3D G3DSA:3.40.50.1010 1 139 3.6E-36 T 11-10-2018 APJL_1219 7387d0c5702063d33ad6e9ed06c8995b 139 SUPERFAMILY SSF88723 1 138 2.66E-24 T 11-10-2018 IPR029060 PIN-like domain superfamily APJL_1219 7387d0c5702063d33ad6e9ed06c8995b 139 Pfam PF01850 PIN domain 2 122 5.7E-13 T 11-10-2018 IPR002716 PIN domain APJL_1386 723239b4d7b68c29af2a45f1b25ea60c 181 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 148 31.97 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 APJL_1386 723239b4d7b68c29af2a45f1b25ea60c 181 SUPERFAMILY SSF82093 30 143 2.88E-38 T 11-10-2018 IPR036127 CcmE-like superfamily GO:0005886|GO:0017003|GO:0017004 APJL_1386 723239b4d7b68c29af2a45f1b25ea60c 181 Gene3D G3DSA:2.40.50.140 30 144 1.4E-40 T 11-10-2018 APJL_1386 723239b4d7b68c29af2a45f1b25ea60c 181 Pfam PF03100 CcmE 4 138 1.0E-44 T 11-10-2018 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004|GO:0020037 APJL_0357 88a03a634eeb4825b5683979f609d205 149 Pfam PF04536 TPM domain 14 125 1.5E-20 T 11-10-2018 IPR007621 TPM domain APJL_0357 88a03a634eeb4825b5683979f609d205 149 Gene3D G3DSA:3.10.310.50 5 148 7.2E-46 T 11-10-2018 APJL_1843 42c88b705ddfbf58306bf751b5de33c5 248 Gene3D G3DSA:3.90.550.10 1 193 2.5E-28 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1843 42c88b705ddfbf58306bf751b5de33c5 248 SUPERFAMILY SSF53448 2 191 4.13E-31 T 11-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases APJL_1843 42c88b705ddfbf58306bf751b5de33c5 248 Pfam PF00535 Glycosyl transferase family 2 2 109 1.2E-17 T 11-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 APJL_0744 1bebaa16f36297414e605c17e1eea102 271 SUPERFAMILY SSF50494 37 255 5.18E-58 T 11-10-2018 IPR009003 Peptidase S1, PA clan APJL_0744 1bebaa16f36297414e605c17e1eea102 271 PRINTS PR00834 HtrA/DegQ protease family signature 180 197 7.1E-42 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_0744 1bebaa16f36297414e605c17e1eea102 271 PRINTS PR00834 HtrA/DegQ protease family signature 145 169 7.1E-42 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_0744 1bebaa16f36297414e605c17e1eea102 271 PRINTS PR00834 HtrA/DegQ protease family signature 105 125 7.1E-42 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_0744 1bebaa16f36297414e605c17e1eea102 271 PRINTS PR00834 HtrA/DegQ protease family signature 202 219 7.1E-42 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_0744 1bebaa16f36297414e605c17e1eea102 271 PRINTS PR00834 HtrA/DegQ protease family signature 84 96 7.1E-42 T 11-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 APJL_0744 1bebaa16f36297414e605c17e1eea102 271 Pfam PF13365 Trypsin-like peptidase domain 75 209 9.2E-30 T 11-10-2018 APJL_0744 1bebaa16f36297414e605c17e1eea102 271 Gene3D G3DSA:2.40.10.10 136 260 1.3E-38 T 11-10-2018 APJL_0744 1bebaa16f36297414e605c17e1eea102 271 Gene3D G3DSA:2.40.10.10 27 135 8.5E-27 T 11-10-2018 APJL_0561 a564ec8ff7000423e0700ecd4db55bbe 517 Pfam PF00884 Sulfatase 199 474 1.4E-28 T 11-10-2018 IPR000917 Sulfatase, N-terminal GO:0008484 APJL_0561 a564ec8ff7000423e0700ecd4db55bbe 517 SUPERFAMILY SSF53649 201 448 7.41E-11 T 11-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 APJL_0561 a564ec8ff7000423e0700ecd4db55bbe 517 Gene3D G3DSA:3.40.720.10 188 502 2.3E-44 T 11-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 APJL_0561 a564ec8ff7000423e0700ecd4db55bbe 517 ProDom PD055757 TRANSFERASE HYDROLASE PHOSPHORYLETHANOLAMINE METAL-DEPENDENT MEMBRANE-ASSOCIATED PRECURSOR PREDICTED PE--LIPOOLIGOSACCHARIDE SIGNAL HI1063 451 516 7.0E-27 T 11-10-2018 IPR020098 Uncharacterised domain HI1063, transferase-like APJL_0624 ea8eb6a3af1dc4d376759bcdb53dc3fa 259 Gene3D G3DSA:1.10.287.1080 129 259 3.7E-46 T 11-10-2018 APJL_0624 ea8eb6a3af1dc4d376759bcdb53dc3fa 259 Gene3D G3DSA:1.10.287.1080 1 124 3.6E-43 T 11-10-2018 APJL_0624 ea8eb6a3af1dc4d376759bcdb53dc3fa 259 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 27 100 6.0E-27 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core APJL_0624 ea8eb6a3af1dc4d376759bcdb53dc3fa 259 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 162 228 1.9E-9 T 11-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core APJL_0624 ea8eb6a3af1dc4d376759bcdb53dc3fa 259 SUPERFAMILY SSF101386 136 237 1.36E-24 T 11-10-2018 APJL_0624 ea8eb6a3af1dc4d376759bcdb53dc3fa 259 TIGRFAM TIGR00444 mazG: MazG family protein 10 257 6.1E-102 T 11-10-2018 IPR011551 NTP pyrophosphohydrolase MazG APJL_0624 ea8eb6a3af1dc4d376759bcdb53dc3fa 259 SUPERFAMILY SSF101386 2 105 7.85E-24 T 11-10-2018 APJL_1362 d8d11a545f2800b7e298934e6183fa88 312 PIRSF PIRSF003097 7 306 1.6E-74 T 11-10-2018 IPR004513 Cell division protein FtsX GO:0016021 APJL_1362 d8d11a545f2800b7e298934e6183fa88 312 TIGRFAM TIGR00439 ftsX: putative protein insertion permease FtsX 7 308 9.9E-126 T 11-10-2018 IPR004513 Cell division protein FtsX GO:0016021 APJL_1362 d8d11a545f2800b7e298934e6183fa88 312 Pfam PF02687 FtsX-like permease family 213 303 3.3E-7 T 11-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 APJL_0507 f265c3a2238967292ccc7a493e609d72 334 Gene3D G3DSA:1.50.10.150 16 332 2.7E-89 T 11-10-2018 IPR038665 Voltage-dependent anion channel superfamily APJL_0507 f265c3a2238967292ccc7a493e609d72 334 Pfam PF03595 Voltage-dependent anion channel 22 322 3.5E-57 T 11-10-2018 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 APJL_1748 bbd59ba9710677e84d6af9dbae79f97a 90 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 2 83 4.0E-15 T 11-10-2018 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 APJL_1748 bbd59ba9710677e84d6af9dbae79f97a 90 SUPERFAMILY SSF52794 1 86 2.35E-20 T 11-10-2018 IPR036095 PTS system IIB component-like superfamily GO:0008982|GO:0009401 APJL_1748 bbd59ba9710677e84d6af9dbae79f97a 90 Gene3D G3DSA:3.40.50.2300 1 87 1.6E-19 T 11-10-2018 APJL_1013 8f614ac9b961b0b355e3df719e238551 322 Gene3D G3DSA:2.70.98.10 1 322 4.3E-94 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 APJL_1013 8f614ac9b961b0b355e3df719e238551 322 SUPERFAMILY SSF74650 3 320 3.58E-88 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 APJL_1013 8f614ac9b961b0b355e3df719e238551 322 PIRSF PIRSF005096 1 322 3.1E-95 T 11-10-2018 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 APJL_1013 8f614ac9b961b0b355e3df719e238551 322 Pfam PF01263 Aldose 1-epimerase 3 319 1.9E-81 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 APJL_1472 e8a3843de8ff06433ea1bdde4c0d5a6e 325 Gene3D G3DSA:3.40.50.1980 135 213 3.3E-16 T 11-10-2018 APJL_1472 e8a3843de8ff06433ea1bdde4c0d5a6e 325 Gene3D G3DSA:3.40.50.1980 21 134 2.9E-31 T 11-10-2018 APJL_1472 e8a3843de8ff06433ea1bdde4c0d5a6e 325 SUPERFAMILY SSF53807 20 325 1.1E-76 T 11-10-2018 APJL_1472 e8a3843de8ff06433ea1bdde4c0d5a6e 325 Gene3D G3DSA:3.40.50.1980 214 325 6.2E-40 T 11-10-2018 APJL_1472 e8a3843de8ff06433ea1bdde4c0d5a6e 325 Pfam PF01297 Zinc-uptake complex component A periplasmic 22 323 1.1E-58 T 11-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 APJL_0760 1814574982afb82ff6d069629fb73147 123 Pfam PF03788 LrgA family 20 111 3.3E-24 T 11-10-2018 IPR005538 LrgA/CidA family GO:0016021 APJL_1376 9d3c6e6047c4ee812e10f6c5cf88be21 123 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 32 109 1.8E-20 T 11-10-2018 IPR009241 Toxin HigB-like APJL_0441 2867c3d1756fdceff855bb116ddc1c12 245 SUPERFAMILY SSF48317 14 234 2.35E-24 T 11-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily APJL_0441 2867c3d1756fdceff855bb116ddc1c12 245 Pfam PF01569 PAP2 superfamily 83 231 2.8E-25 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APJL_0441 2867c3d1756fdceff855bb116ddc1c12 245 Gene3D G3DSA:1.20.144.10 1 244 1.2E-48 T 11-10-2018 APJL_0441 2867c3d1756fdceff855bb116ddc1c12 245 SMART SM00014 78 228 7.4E-17 T 11-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase APJL_0457 9107591bef1a5ad75fab75cb72e4821d 66 Pfam PF07119 Protein of unknown function (DUF1375) 6 64 8.3E-9 T 11-10-2018 IPR010780 Protein of unknown function DUF1375 APJL_1670 92ff145c1596da6e8cbb4636a859383b 232 Gene3D G3DSA:3.40.50.1580 3 232 2.4E-67 T 11-10-2018 APJL_1670 92ff145c1596da6e8cbb4636a859383b 232 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 4 229 5.3E-98 T 11-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1670 92ff145c1596da6e8cbb4636a859383b 232 Pfam PF01048 Phosphorylase superfamily 4 228 1.2E-49 T 11-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 APJL_1670 92ff145c1596da6e8cbb4636a859383b 232 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 4 231 46.78 T 11-10-2018 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 APJL_1670 92ff145c1596da6e8cbb4636a859383b 232 SUPERFAMILY SSF53167 4 229 6.15E-74 T 11-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 APJL_1686 085b87f6d537719bd62091e1bb2b2bed 127 Pfam PF03899 ATP synthase I chain 16 109 4.8E-17 T 11-10-2018 IPR005598 ATP synthase protein I APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 Gene3D G3DSA:2.30.33.40 1 96 8.6E-33 T 11-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 22.363 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 PRINTS PR00297 10kDa chaperonin signature 60 72 8.0E-25 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 PRINTS PR00297 10kDa chaperonin signature 3 18 8.0E-25 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 PRINTS PR00297 10kDa chaperonin signature 25 46 8.0E-25 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 PRINTS PR00297 10kDa chaperonin signature 82 95 8.0E-25 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 SMART SM00883 2 95 5.0E-43 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 Pfam PF00166 Chaperonin 10 Kd subunit 3 95 2.3E-26 T 11-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 APJL_1031 853a161367a6456aff3dc9a32dc1289b 96 SUPERFAMILY SSF50129 1 96 8.01E-27 T 11-10-2018 IPR011032 GroES-like superfamily APJL_0169 2020d742fdd60f06ee144060d9b92716 214 Pfam PF03458 UPF0126 domain 19 93 5.7E-24 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 APJL_0169 2020d742fdd60f06ee144060d9b92716 214 Pfam PF03458 UPF0126 domain 107 180 1.2E-21 T 11-10-2018 IPR005115 Uncharacterised domain UPF0126 APJL_0471 a16b54aa7f21861fab2fa8f93fc5779b 232 SUPERFAMILY SSF100950 43 230 1.13E-41 T 11-10-2018 IPR037171 NagB/RpiA transferase-like APJL_0471 a16b54aa7f21861fab2fa8f93fc5779b 232 Pfam PF02589 LUD domain 51 228 7.4E-32 T 11-10-2018 IPR003741 LUD domain APJL_0471 a16b54aa7f21861fab2fa8f93fc5779b 232 Gene3D G3DSA:3.40.50.10420 42 229 2.8E-33 T 11-10-2018 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily APJL_0092 69da61ed49f9f168217415dde6e57f8a 58 Pfam PF01206 Sulfurtransferase TusA 1 56 4.4E-17 T 11-10-2018 IPR001455 TusA-like domain APJL_0092 69da61ed49f9f168217415dde6e57f8a 58 SUPERFAMILY SSF64307 1 57 2.09E-18 T 11-10-2018 IPR036868 TusA-like domain superfamily APJL_0092 69da61ed49f9f168217415dde6e57f8a 58 Gene3D G3DSA:3.30.110.40 1 57 2.7E-20 T 11-10-2018 IPR036868 TusA-like domain superfamily APJL_0133 e18f31dd44a1c37fe7e4def36258cea7 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 194 2.2E-23 T 11-10-2018 APJL_0133 e18f31dd44a1c37fe7e4def36258cea7 226 TIGRFAM TIGR02254 YjjG/YfnB: noncanonical pyrimidine nucleotidase, YjjG family 3 221 1.3E-62 T 11-10-2018 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB GO:0016787 APJL_0133 e18f31dd44a1c37fe7e4def36258cea7 226 Gene3D G3DSA:1.10.150.240 16 95 1.4E-60 T 11-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 APJL_0133 e18f31dd44a1c37fe7e4def36258cea7 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 109 189 2.4E-14 T 11-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 APJL_0133 e18f31dd44a1c37fe7e4def36258cea7 226 SUPERFAMILY SSF56784 2 223 5.41E-44 T 11-10-2018 IPR036412 HAD-like superfamily APJL_0133 e18f31dd44a1c37fe7e4def36258cea7 226 Gene3D G3DSA:3.40.50.1000 5 218 1.4E-60 T 11-10-2018 IPR023214 HAD superfamily APJL_1504 45223d578cccd5712b4d5bd1e6b27459 171 SUPERFAMILY SSF52833 16 159 3.53E-26 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1504 45223d578cccd5712b4d5bd1e6b27459 171 Pfam PF00578 AhpC/TSA family 48 151 7.2E-12 T 11-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 APJL_1504 45223d578cccd5712b4d5bd1e6b27459 171 ProSitePatterns PS00194 Thioredoxin family active site. 66 84 - T 11-10-2018 IPR017937 Thioredoxin, conserved site GO:0045454 APJL_1504 45223d578cccd5712b4d5bd1e6b27459 171 Gene3D G3DSA:3.40.30.10 32 163 2.9E-24 T 11-10-2018 APJL_2041 886219b1d48347de33c5465d8e6e14a4 311 SUPERFAMILY SSF55048 131 196 2.35E-15 T 11-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding APJL_2041 886219b1d48347de33c5465d8e6e14a4 311 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 294 7.1E-127 T 11-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 APJL_2041 886219b1d48347de33c5465d8e6e14a4 311 Gene3D G3DSA:3.30.70.250 126 200 3.9E-102 T 11-10-2018 APJL_2041 886219b1d48347de33c5465d8e6e14a4 311 PIRSF PIRSF000446 1 311 2.2E-135 T 11-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 APJL_2041 886219b1d48347de33c5465d8e6e14a4 311 Pfam PF00698 Acyl transferase domain 7 294 9.1E-37 T 11-10-2018 IPR014043 Acyl transferase APJL_2041 886219b1d48347de33c5465d8e6e14a4 311 SUPERFAMILY SSF52151 4 308 3.92E-82 T 11-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase APJL_2041 886219b1d48347de33c5465d8e6e14a4 311 Gene3D G3DSA:3.40.366.10 6 288 3.9E-102 T 11-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 APJL_2041 886219b1d48347de33c5465d8e6e14a4 311 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 309 8.9E-37 T 11-10-2018 IPR020801 Polyketide synthase, acyl transferase domain APJL_1406 f406d469880d0c86d9160fc5f6c1d472 263 Pfam PF01578 Cytochrome C assembly protein 61 262 6.9E-25 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APJL_0334 a99bb40db3904bd2c834ffad7c38f3b7 362 SUPERFAMILY SSF51726 10 360 1.09E-80 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_0334 a99bb40db3904bd2c834ffad7c38f3b7 362 Gene3D G3DSA:3.20.20.210 2 362 2.6E-117 T 11-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 APJL_0334 a99bb40db3904bd2c834ffad7c38f3b7 362 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 11 340 4.8E-20 T 11-10-2018 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 APJL_0528 4c9f17792d6bda915c76f3f99ea6cd56 216 Pfam PF03070 TENA/THI-4/PQQC family 9 213 1.6E-57 T 11-10-2018 IPR004305 Thiaminase-2/PQQC APJL_0528 4c9f17792d6bda915c76f3f99ea6cd56 216 Gene3D G3DSA:1.20.910.10 1 213 3.8E-66 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APJL_0528 4c9f17792d6bda915c76f3f99ea6cd56 216 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 11 212 9.7E-50 T 11-10-2018 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356 APJL_0528 4c9f17792d6bda915c76f3f99ea6cd56 216 SUPERFAMILY SSF48613 1 210 1.75E-67 T 11-10-2018 IPR016084 Haem oxygenase-like, multi-helical Reactome: R-HSA-189483|Reactome: R-HSA-917937 APJL_0102 ea72539596a771860e65fec01850e4b3 225 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 2 225 3.7E-130 T 11-10-2018 IPR017567 Cytochrome c nitrite reductase, Fe-S protein APJL_0102 ea72539596a771860e65fec01850e4b3 225 SUPERFAMILY SSF54862 36 218 2.72E-64 T 11-10-2018 APJL_0102 ea72539596a771860e65fec01850e4b3 225 Gene3D G3DSA:3.30.70.20 40 216 8.4E-57 T 11-10-2018 APJL_0102 ea72539596a771860e65fec01850e4b3 225 Pfam PF13247 4Fe-4S dicluster domain 86 184 4.4E-24 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_0102 ea72539596a771860e65fec01850e4b3 225 Gene3D G3DSA:3.30.70.20 101 154 8.4E-57 T 11-10-2018 APJL_0102 ea72539596a771860e65fec01850e4b3 225 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 128 139 - T 11-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site APJL_0102 ea72539596a771860e65fec01850e4b3 225 Pfam PF12798 4Fe-4S binding domain 49 61 0.16 T 11-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain APJL_1215 716a28a3b984be2a92b63d2b89e23776 205 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 2 197 2.4E-39 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APJL_1215 716a28a3b984be2a92b63d2b89e23776 205 Pfam PF01914 MarC family integral membrane protein 3 200 8.3E-42 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APJL_0940 08f014a0ff932b6c8b1d2120fa79680f 127 Pfam PF01592 NifU-like N terminal domain 2 126 4.2E-56 T 11-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 APJL_0940 08f014a0ff932b6c8b1d2120fa79680f 127 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 7.2E-68 T 11-10-2018 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 APJL_0940 08f014a0ff932b6c8b1d2120fa79680f 127 Gene3D G3DSA:3.90.1010.10 1 127 8.3E-58 T 11-10-2018 APJL_0940 08f014a0ff932b6c8b1d2120fa79680f 127 SUPERFAMILY SSF82649 1 125 4.71E-47 T 11-10-2018 APJL_2026 cf25558f826dd249973da7005c0092b7 406 Pfam PF04143 Sulphur transport 238 390 1.5E-20 T 11-10-2018 IPR007272 Sulphur transport domain APJL_2026 cf25558f826dd249973da7005c0092b7 406 Pfam PF04143 Sulphur transport 6 162 1.3E-26 T 11-10-2018 IPR007272 Sulphur transport domain APJL_1122 e972a811cc4366a470b9d68bc427429f 128 SUPERFAMILY SSF56059 1 120 1.24E-19 T 11-10-2018 APJL_1122 e972a811cc4366a470b9d68bc427429f 128 Pfam PF02222 ATP-grasp domain 1 30 9.7E-10 T 11-10-2018 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type APJL_1122 e972a811cc4366a470b9d68bc427429f 128 Gene3D G3DSA:3.30.470.20 1 126 3.2E-37 T 11-10-2018 APJL_0468 36a1fc2fbbb867230f68094d9b4e6d2d 229 Pfam PF02698 DUF218 domain 69 205 1.1E-15 T 11-10-2018 IPR003848 Domain of unknown function DUF218 APJL_1607 c95889918ea7516354a6bf48c1a040fb 184 Pfam PF17311 Family of unknown function (DUF5358) 27 184 2.6E-82 T 11-10-2018 IPR035279 Protein of unknown function DUF5358 APJL_1607 c95889918ea7516354a6bf48c1a040fb 184 ProDom PD104362 PM1073 HI0966 3 184 6.0E-67 T 11-10-2018 IPR035279 Protein of unknown function DUF5358 APJL_1048 07eed4f09da55587e6ec0b2f72a67d51 321 Pfam PF04230 Polysaccharide pyruvyl transferase 35 292 1.3E-20 T 11-10-2018 IPR007345 Polysaccharide pyruvyl transferase APJL_1947 971519033efc33cb29cbbf751f8b0127 236 Gene3D G3DSA:1.20.1080.10 1 234 1.9E-74 T 11-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 APJL_1947 971519033efc33cb29cbbf751f8b0127 236 Pfam PF01226 Formate/nitrite transporter 2 223 1.1E-67 T 11-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 APJL_1060 3def68df24ad14ad2382388687098e01 426 Pfam PF00425 chorismate binding enzyme 164 415 5.8E-72 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal APJL_1060 3def68df24ad14ad2382388687098e01 426 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 97 421 9.3E-101 T 11-10-2018 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 APJL_1060 3def68df24ad14ad2382388687098e01 426 SUPERFAMILY SSF56322 36 423 2.35E-95 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APJL_1060 3def68df24ad14ad2382388687098e01 426 Gene3D G3DSA:3.60.120.10 1 426 1.5E-120 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APJL_1060 3def68df24ad14ad2382388687098e01 426 Hamap MF_01935 Isochorismate synthase MenF [menF]. 3 425 29.706 T 11-10-2018 IPR034681 Isochorismate synthase MenF GO:0008909|GO:0009234 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 APJL_0128 ca3a8c7729ecf07a30a76833ca44dc0b 276 SUPERFAMILY SSF81345 8 266 5.49E-43 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_0128 ca3a8c7729ecf07a30a76833ca44dc0b 276 Pfam PF00950 ABC 3 transport family 14 267 2.8E-89 T 11-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 APJL_0128 ca3a8c7729ecf07a30a76833ca44dc0b 276 Gene3D G3DSA:1.10.3470.10 64 274 2.1E-11 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_2008 a085dda67de932aad17486e605c6834f 92 Pfam PF17209 Hfq protein 7 68 2.5E-30 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 APJL_2008 a085dda67de932aad17486e605c6834f 92 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.307 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 APJL_2008 a085dda67de932aad17486e605c6834f 92 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 1.2E-29 T 11-10-2018 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 APJL_2008 a085dda67de932aad17486e605c6834f 92 SUPERFAMILY SSF50182 7 69 5.39E-24 T 11-10-2018 IPR010920 LSM domain superfamily APJL_2008 a085dda67de932aad17486e605c6834f 92 Gene3D G3DSA:2.30.30.100 1 72 4.3E-33 T 11-10-2018 APJL_0480 7a757d1fcac489e2b07d6c19d5ebba37 288 Pfam PF04393 Protein of unknown function (DUF535) 18 280 7.4E-83 T 11-10-2018 IPR007488 Protein of unknown function DUF535 APJL_0089 ee453c2b0646bc503c331c634e2c5695 272 SUPERFAMILY SSF103481 172 271 7.19E-17 T 11-10-2018 APJL_0089 ee453c2b0646bc503c331c634e2c5695 272 Pfam PF00892 EamA-like transporter family 138 268 3.5E-23 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_0089 ee453c2b0646bc503c331c634e2c5695 272 Pfam PF00892 EamA-like transporter family 4 126 9.5E-9 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_0089 ee453c2b0646bc503c331c634e2c5695 272 SUPERFAMILY SSF103481 29 127 9.29E-11 T 11-10-2018 APJL_1430 2b68e2ea9768e77362589cbba36724a4 463 Pfam PF04225 Opacity-associated protein A LysM-like domain 387 462 4.2E-25 T 11-10-2018 IPR007340 Opacity-associated protein A APJL_1965 9d3371a79e27e6cdc4734bffd3a72543 249 PRINTS PR01805 VacJ lipoprotein signature 49 65 1.4E-27 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APJL_1965 9d3371a79e27e6cdc4734bffd3a72543 249 PRINTS PR01805 VacJ lipoprotein signature 100 117 1.4E-27 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APJL_1965 9d3371a79e27e6cdc4734bffd3a72543 249 PRINTS PR01805 VacJ lipoprotein signature 139 156 1.4E-27 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APJL_1965 9d3371a79e27e6cdc4734bffd3a72543 249 PRINTS PR01805 VacJ lipoprotein signature 31 44 1.4E-27 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APJL_1965 9d3371a79e27e6cdc4734bffd3a72543 249 Pfam PF04333 MlaA lipoprotein 30 224 8.3E-66 T 11-10-2018 IPR007428 MlaA lipoprotein GO:0016020 APJL_1102 a4e5da5d9fcceb8ea1a382f1aa4dfff5 215 Gene3D G3DSA:2.40.160.20 22 215 4.4E-58 T 11-10-2018 APJL_1102 a4e5da5d9fcceb8ea1a382f1aa4dfff5 215 Pfam PF03922 OmpW family 23 215 1.9E-50 T 11-10-2018 IPR005618 Outer membrane protein, OmpW GO:0019867 APJL_1102 a4e5da5d9fcceb8ea1a382f1aa4dfff5 215 SUPERFAMILY SSF56925 23 215 1.1E-24 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_1165 6561e2c36c6ee2afb37c20155bd7c06f 322 SUPERFAMILY SSF56322 52 321 1.83E-69 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APJL_1165 6561e2c36c6ee2afb37c20155bd7c06f 322 Gene3D G3DSA:3.60.120.10 10 322 5.1E-71 T 11-10-2018 IPR005801 ADC synthase GO:0009058 APJL_1165 6561e2c36c6ee2afb37c20155bd7c06f 322 PRINTS PR00095 Anthranilate synthase component I signature 173 186 3.3E-9 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1165 6561e2c36c6ee2afb37c20155bd7c06f 322 PRINTS PR00095 Anthranilate synthase component I signature 159 172 3.3E-9 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1165 6561e2c36c6ee2afb37c20155bd7c06f 322 PRINTS PR00095 Anthranilate synthase component I signature 271 285 3.3E-9 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1165 6561e2c36c6ee2afb37c20155bd7c06f 322 PRINTS PR00095 Anthranilate synthase component I signature 257 271 3.3E-9 T 11-10-2018 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|KEGG: 00405+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 APJL_1165 6561e2c36c6ee2afb37c20155bd7c06f 322 Pfam PF00425 chorismate binding enzyme 70 314 5.9E-62 T 11-10-2018 IPR015890 Chorismate-utilising enzyme, C-terminal APJL_1727 22bcacc4e16b67f49b929f014979bc1c 689 Pfam PF05159 Capsule polysaccharide biosynthesis protein 45 309 4.1E-64 T 11-10-2018 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 APJL_1727 22bcacc4e16b67f49b929f014979bc1c 689 Pfam PF05159 Capsule polysaccharide biosynthesis protein 487 632 5.4E-31 T 11-10-2018 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 APJL_1727 22bcacc4e16b67f49b929f014979bc1c 689 Pfam PF05159 Capsule polysaccharide biosynthesis protein 399 470 3.2E-8 T 11-10-2018 IPR007833 Capsule polysaccharide biosynthesis GO:0000271|GO:0015774 APJL_0736 ca5aca4df324ed9b33272a0a615af4e2 149 PIRSF PIRSF009554 2 147 4.5E-47 T 11-10-2018 IPR011194 Uncharacterised protein family UPF0306 APJL_0736 ca5aca4df324ed9b33272a0a615af4e2 149 SUPERFAMILY SSF50475 4 130 5.13E-11 T 11-10-2018 APJL_0736 ca5aca4df324ed9b33272a0a615af4e2 149 Gene3D G3DSA:2.30.110.10 3 132 8.8E-6 T 11-10-2018 IPR012349 FMN-binding split barrel GO:0048037 APJL_0731 f203799e659d5c90717bf7f4cc1178c4 449 SUPERFAMILY SSF111283 14 449 4.19E-122 T 11-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 APJL_0731 f203799e659d5c90717bf7f4cc1178c4 449 Pfam PF01523 Putative modulator of DNA gyrase 33 325 2.3E-56 T 11-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 APJL_0731 f203799e659d5c90717bf7f4cc1178c4 449 Gene3D G3DSA:3.30.2290.10 9 234 1.1E-80 T 11-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal APJL_1930 2c38da6f8ddd56eb72edb4247e1262fa 232 PIRSF PIRSF004525 11 232 1.2E-41 T 11-10-2018 IPR016419 Prepilin peptidase-dependent protein B, predicted APJL_0682 191bc44eadfa0b8eb353a48f269d48e8 305 Pfam PF15931 Domain of unknown function (DUF4747) 13 267 6.1E-55 T 11-10-2018 IPR031832 Protein of unknown function DUF4747 APJL_1726 bb5bdc206d6504c1f2deab293962c31f 278 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 69 82 - T 11-10-2018 IPR018313 Solute-binding protein family 3, conserved site APJL_1726 bb5bdc206d6504c1f2deab293962c31f 278 SUPERFAMILY SSF53850 7 263 7.47E-62 T 11-10-2018 APJL_1726 bb5bdc206d6504c1f2deab293962c31f 278 Gene3D G3DSA:3.40.190.10 136 226 1.4E-81 T 11-10-2018 APJL_1726 bb5bdc206d6504c1f2deab293962c31f 278 SMART SM00062 46 268 7.1E-72 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APJL_1726 bb5bdc206d6504c1f2deab293962c31f 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 47 263 1.7E-51 T 11-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF APJL_1726 bb5bdc206d6504c1f2deab293962c31f 278 Gene3D G3DSA:3.40.190.10 41 261 1.4E-81 T 11-10-2018 APJL_0660 57e87be6f8507b72970c0717d61d38d4 86 Gene3D G3DSA:2.10.260.10 1 84 1.7E-17 T 11-10-2018 APJL_0873 fd80dc09e906b400fdf23459d8685775 247 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 51 65 - T 11-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0873 fd80dc09e906b400fdf23459d8685775 247 SUPERFAMILY SSF55120 2 240 6.56E-66 T 11-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0873 fd80dc09e906b400fdf23459d8685775 247 Gene3D G3DSA:3.30.2350.10 3 236 6.1E-63 T 11-10-2018 APJL_0873 fd80dc09e906b400fdf23459d8685775 247 Pfam PF00849 RNA pseudouridylate synthase 12 170 8.6E-33 T 11-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 APJL_0928 e14d87c462cde63e4d53b6783afb8d33 169 SUPERFAMILY SSF46689 57 161 2.51E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0928 e14d87c462cde63e4d53b6783afb8d33 169 Pfam PF13518 Helix-turn-helix domain 65 118 2.3E-11 T 11-10-2018 APJL_0928 e14d87c462cde63e4d53b6783afb8d33 169 Pfam PF13518 Helix-turn-helix domain 8 53 6.4E-7 T 11-10-2018 APJL_0928 e14d87c462cde63e4d53b6783afb8d33 169 SUPERFAMILY SSF46689 1 52 1.34E-8 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1338 ee3a2819535cf0ee162ccb93736e509c 166 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 20 140 8.6E-49 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 APJL_1338 ee3a2819535cf0ee162ccb93736e509c 166 SUPERFAMILY SSF51261 12 164 9.42E-56 T 11-10-2018 IPR011055 Duplicated hybrid motif APJL_1338 ee3a2819535cf0ee162ccb93736e509c 166 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 19 143 2.5E-49 T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 APJL_1338 ee3a2819535cf0ee162ccb93736e509c 166 Gene3D G3DSA:2.70.70.10 7 166 1.1E-58 T 11-10-2018 IPR011055 Duplicated hybrid motif APJL_1338 ee3a2819535cf0ee162ccb93736e509c 166 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 82 94 - T 11-10-2018 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 APJL_2015 0708b89a7fbfbe2f6596fadf0fc3762a 151 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 150 33.23 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 APJL_2015 0708b89a7fbfbe2f6596fadf0fc3762a 151 Pfam PF00692 dUTPase 16 149 9.4E-43 T 11-10-2018 IPR029054 dUTPase-like APJL_2015 0708b89a7fbfbe2f6596fadf0fc3762a 151 Gene3D G3DSA:2.70.40.10 1 151 2.0E-52 T 11-10-2018 IPR036157 dUTPase-like superfamily APJL_2015 0708b89a7fbfbe2f6596fadf0fc3762a 151 TIGRFAM TIGR00576 dut: dUTP diphosphatase 12 150 6.1E-49 T 11-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 APJL_2015 0708b89a7fbfbe2f6596fadf0fc3762a 151 SUPERFAMILY SSF51283 1 150 1.14E-54 T 11-10-2018 IPR036157 dUTPase-like superfamily APJL_1919 3e8d7dd0c6038801738a949ea6104fcf 236 Pfam PF17311 Family of unknown function (DUF5358) 35 173 4.2E-19 T 11-10-2018 IPR035279 Protein of unknown function DUF5358 APJL_1919 3e8d7dd0c6038801738a949ea6104fcf 236 ProDom PD104362 PM1073 HI0966 9 132 4.0E-9 T 11-10-2018 IPR035279 Protein of unknown function DUF5358 APJL_1638 de9127d97911fbcf520dced4c92904ef 432 Pfam PF03313 Serine dehydratase alpha chain 90 422 4.4E-48 T 11-10-2018 IPR005130 Serine dehydratase-like, alpha subunit APJL_1638 de9127d97911fbcf520dced4c92904ef 432 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 7 427 35.671 T 11-10-2018 IPR021144 Uncharacterised protein family UPF0597 APJL_1638 de9127d97911fbcf520dced4c92904ef 432 PIRSF PIRSF006054 4 429 1.8E-165 T 11-10-2018 IPR021144 Uncharacterised protein family UPF0597 APJL_0889 5e7654e138205dc81a86495d2e013f0b 212 Pfam PF01478 Type IV leader peptidase family 77 177 2.0E-5 T 11-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 APJL_0232 5e97fdb5bc411f91d565344420922db1 63 SUPERFAMILY SSF53098 2 62 4.36E-11 T 11-10-2018 IPR012337 Ribonuclease H-like superfamily APJL_0232 5e97fdb5bc411f91d565344420922db1 63 Pfam PF13333 Integrase core domain 7 62 1.7E-26 T 11-10-2018 IPR001584 Integrase, catalytic core GO:0015074 APJL_1072 cae71d01d228cf8e4635bae8d552cd3e 842 PIRSF PIRSF001444 28 841 4.4E-278 T 11-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 APJL_1072 cae71d01d228cf8e4635bae8d552cd3e 842 Pfam PF12633 Adenylate cyclase NT domain 36 224 3.6E-69 T 11-10-2018 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 APJL_1072 cae71d01d228cf8e4635bae8d552cd3e 842 Pfam PF01295 Adenylate cyclase, class-I 244 829 3.3E-240 T 11-10-2018 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 APJL_1252 0a7fb9916ddbf840005aa2d5319a093e 672 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 93 667 1.1E-190 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APJL_1252 0a7fb9916ddbf840005aa2d5319a093e 672 Gene3D G3DSA:3.20.20.80 132 668 1.4E-116 T 11-10-2018 APJL_1252 0a7fb9916ddbf840005aa2d5319a093e 672 SUPERFAMILY SSF51445 125 666 1.66E-140 T 11-10-2018 IPR017853 Glycoside hydrolase superfamily APJL_1252 0a7fb9916ddbf840005aa2d5319a093e 672 Pfam PF02446 4-alpha-glucanotransferase 141 647 1.2E-126 T 11-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 APJL_1168 5f46ac0914a3b9335a9658b73e79f67b 149 Gene3D G3DSA:3.30.310.70 26 149 2.0E-16 T 11-10-2018 IPR035923 TT1751-like domain superfamily APJL_1168 5f46ac0914a3b9335a9658b73e79f67b 149 SUPERFAMILY SSF103247 28 146 3.92E-28 T 11-10-2018 IPR035923 TT1751-like domain superfamily APJL_1168 5f46ac0914a3b9335a9658b73e79f67b 149 Pfam PF03625 Domain of unknown function DUF302 56 115 4.7E-16 T 11-10-2018 IPR005180 Domain of unknown function DUF302 APJL_1707 16be1ef0c09b0f445076c5f1b813efb8 277 Pfam PF04976 DMSO reductase anchor subunit (DmsC) 1 269 5.2E-92 T 11-10-2018 IPR007059 DMSO reductase anchor subunit (DmsC) GO:0016021|GO:0019645 APJL_2017 b77d38a2b5d1795b83b426ba99a1568d 220 TIGRFAM TIGR00608 radc: DNA repair protein RadC 7 217 1.2E-81 T 11-10-2018 IPR001405 Uncharacterised protein family UPF0758 APJL_2017 b77d38a2b5d1795b83b426ba99a1568d 220 Pfam PF04002 RadC-like JAB domain 102 218 1.5E-45 T 11-10-2018 IPR025657 RadC-like JAB domain APJL_2017 b77d38a2b5d1795b83b426ba99a1568d 220 Gene3D G3DSA:3.40.140.10 95 219 1.1E-46 T 11-10-2018 APJL_2017 b77d38a2b5d1795b83b426ba99a1568d 220 SUPERFAMILY SSF47781 12 85 1.22E-7 T 11-10-2018 IPR010994 RuvA domain 2-like APJL_2017 b77d38a2b5d1795b83b426ba99a1568d 220 SUPERFAMILY SSF102712 145 190 8.11E-6 T 11-10-2018 APJL_2017 b77d38a2b5d1795b83b426ba99a1568d 220 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 169 174 - T 11-10-2018 IPR020891 Uncharacterised protein family UPF0758, conserved site APJL_0510 f51efc057de2347d6c80ddd3125bf6ba 70 Pfam PF11127 Protein of unknown function (DUF2892) 1 60 1.8E-18 T 11-10-2018 IPR021309 Protein of unknown function DUF2892 APJL_0715 dd1f6b841104a3a0cc69c2d28ecf020e 315 Gene3D G3DSA:1.10.3470.10 2 315 3.0E-66 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_0715 dd1f6b841104a3a0cc69c2d28ecf020e 315 SUPERFAMILY SSF81345 5 312 1.1E-65 T 11-10-2018 IPR037294 ABC transporter, BtuC-like APJL_0715 dd1f6b841104a3a0cc69c2d28ecf020e 315 Pfam PF01032 FecCD transport family 12 312 1.2E-68 T 11-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 APJL_0853 411100e17cff6c2d74b79f7d87d72ae2 363 Pfam PF04245 37-kD nucleoid-associated bacterial protein 9 308 3.5E-21 T 11-10-2018 IPR007358 Nucleoid-associated protein NdpA GO:0009295 APJL_1924 d3ed3e57d459fa73143f7090397b0eca 392 Pfam PF13535 ATP-grasp domain 151 291 7.7E-12 T 11-10-2018 APJL_1924 d3ed3e57d459fa73143f7090397b0eca 392 SUPERFAMILY SSF56059 91 324 2.12E-40 T 11-10-2018 APJL_1924 d3ed3e57d459fa73143f7090397b0eca 392 Gene3D G3DSA:3.30.470.20 111 390 9.0E-30 T 11-10-2018 APJL_1405 6462df633659c9bb010256c80e971ec6 174 Pfam PF02620 Uncharacterized ACR, COG1399 62 172 1.8E-16 T 11-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD APJL_1178 28b3750223390029b739f88811530cb9 378 Pfam PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B 255 376 1.2E-25 T 11-10-2018 IPR001677 Transferrin-binding protein, C-lobe/N-lobe beta barrel domain APJL_1178 28b3750223390029b739f88811530cb9 378 Gene3D G3DSA:2.40.160.90 250 378 1.6E-29 T 11-10-2018 APJL_1178 28b3750223390029b739f88811530cb9 378 SUPERFAMILY SSF56925 224 376 7.85E-28 T 11-10-2018 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel APJL_0229 fcf4a5e0f0dc9b27bc26a6f4f0dd10fd 169 Pfam PF13518 Helix-turn-helix domain 65 116 2.0E-11 T 11-10-2018 APJL_0229 fcf4a5e0f0dc9b27bc26a6f4f0dd10fd 169 Pfam PF13518 Helix-turn-helix domain 8 53 6.9E-7 T 11-10-2018 APJL_0229 fcf4a5e0f0dc9b27bc26a6f4f0dd10fd 169 SUPERFAMILY SSF46689 1 52 2.33E-7 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_0229 fcf4a5e0f0dc9b27bc26a6f4f0dd10fd 169 SUPERFAMILY SSF46689 57 161 3.58E-13 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1008 833e52bfdadf5b4bc8362c89d96bd3ce 359 Gene3D G3DSA:3.60.21.10 139 324 3.5E-20 T 11-10-2018 IPR029052 Metallo-dependent phosphatase-like APJL_1008 833e52bfdadf5b4bc8362c89d96bd3ce 359 SUPERFAMILY SSF56300 140 356 1.55E-35 T 11-10-2018 APJL_1008 833e52bfdadf5b4bc8362c89d96bd3ce 359 Pfam PF00149 Calcineurin-like phosphoesterase 140 302 5.5E-13 T 11-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 APJL_1571 16bc648f06a4031660ae960e319792dd 241 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 60 226 3.1E-49 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 APJL_1571 16bc648f06a4031660ae960e319792dd 241 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 56 232 1.0E-58 T 11-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 APJL_0772 a36b0b52474241285cbaca7a2cf2055c 99 Pfam PF14131 Domain of unknown function (DUF4298) 5 90 5.6E-22 T 11-10-2018 IPR025384 Protein of unknown function DUF4298 APJL_1956 3312d98caee55262d287e30888b5d693 332 TIGRFAM TIGR02634 xylF: D-xylose ABC transporter, D-xylose-binding protein 28 329 2.7E-161 T 11-10-2018 IPR013456 D-xylose ABC transporter, substrate-binding protein GO:0015753|GO:0048029 APJL_1956 3312d98caee55262d287e30888b5d693 332 Gene3D G3DSA:3.40.50.2300 129 324 5.6E-124 T 11-10-2018 APJL_1956 3312d98caee55262d287e30888b5d693 332 Pfam PF13407 Periplasmic binding protein domain 29 285 2.1E-63 T 11-10-2018 IPR025997 Periplasmic binding protein APJL_1956 3312d98caee55262d287e30888b5d693 332 Gene3D G3DSA:3.40.50.2300 38 305 5.6E-124 T 11-10-2018 APJL_1956 3312d98caee55262d287e30888b5d693 332 SUPERFAMILY SSF53822 24 318 6.39E-73 T 11-10-2018 IPR028082 Periplasmic binding protein-like I APJL_0565 c6831da92e435a439894c5a2ab0227e4 295 SUPERFAMILY SSF51366 19 268 3.77E-69 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_0565 c6831da92e435a439894c5a2ab0227e4 295 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 10 295 1.4E-150 T 11-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_0565 c6831da92e435a439894c5a2ab0227e4 295 PIRSF PIRSF029271 1 295 4.6E-149 T 11-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_0565 c6831da92e435a439894c5a2ab0227e4 295 ProSitePatterns PS01235 PdxS/SNZ family signature. 206 224 - T 11-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_0565 c6831da92e435a439894c5a2ab0227e4 295 Gene3D G3DSA:3.20.20.70 3 295 1.9E-143 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_0565 c6831da92e435a439894c5a2ab0227e4 295 Pfam PF01680 SOR/SNZ family 9 213 9.0E-104 T 11-10-2018 IPR033755 PdxS/SNZ N-terminal domain KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_0565 c6831da92e435a439894c5a2ab0227e4 295 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 5 295 52.296 T 11-10-2018 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466 APJL_1578 e7a07ebf9ada82ef6468be008076b185 207 Pfam PF00583 Acetyltransferase (GNAT) family 88 191 5.8E-12 T 11-10-2018 IPR000182 GNAT domain APJL_1578 e7a07ebf9ada82ef6468be008076b185 207 Gene3D G3DSA:3.40.630.30 2 206 1.0E-50 T 11-10-2018 APJL_1578 e7a07ebf9ada82ef6468be008076b185 207 SUPERFAMILY SSF55729 30 204 4.9E-24 T 11-10-2018 IPR016181 Acyl-CoA N-acyltransferase APJL_0466 32ecf7f19798a2904ab822b5493e4a72 265 Pfam PF13230 Glutamine amidotransferases class-II 1 260 3.6E-108 T 11-10-2018 IPR026869 Putative glutamine amidotransferase type 2 APJL_0466 32ecf7f19798a2904ab822b5493e4a72 265 Gene3D G3DSA:3.60.20.10 1 256 2.6E-93 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APJL_0466 32ecf7f19798a2904ab822b5493e4a72 265 SUPERFAMILY SSF56235 2 251 5.73E-45 T 11-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal APJL_1448 ca7d52ba6fdeac65c96f9f0e7312a8b8 113 Pfam PF05433 Glycine zipper 2TM domain 29 64 1.1E-7 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 APJL_0178 53e1b8ccbd26ed28cf9c09828f6e39b7 156 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 86 97 - T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APJL_0178 53e1b8ccbd26ed28cf9c09828f6e39b7 156 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 131 4.1E-42 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APJL_0178 53e1b8ccbd26ed28cf9c09828f6e39b7 156 SUPERFAMILY SSF55083 1 154 2.49E-52 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APJL_0178 53e1b8ccbd26ed28cf9c09828f6e39b7 156 Gene3D G3DSA:3.30.70.560 1 156 7.3E-54 T 11-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APJL_0178 53e1b8ccbd26ed28cf9c09828f6e39b7 156 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 131 2.5E-36 T 11-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 APJL_0596 3135cbce14da59feb49b00a20694e899 260 Pfam PF03883 Peroxide stress protein YaaA 1 245 1.0E-86 T 11-10-2018 IPR005583 Peroxide stress protein YaaA APJL_0596 3135cbce14da59feb49b00a20694e899 260 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 257 35.922 T 11-10-2018 IPR005583 Peroxide stress protein YaaA APJL_1399 dba8a2b507765883958dd5e891ed78fb 177 Pfam PF02325 YGGT family 10 76 2.6E-11 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 APJL_1399 dba8a2b507765883958dd5e891ed78fb 177 Pfam PF02325 YGGT family 98 165 3.2E-15 T 11-10-2018 IPR003425 CCB3/YggT GO:0016020 APJL_1259 e17bc722d563cd20928f17c665182979 219 Pfam PF03591 AzlC protein 1 141 2.1E-32 T 11-10-2018 IPR011606 Branched-chain amino acid transport, permease APJL_1929 6a71275e82eae71b80e394f2bd20675e 218 Pfam PF10833 Protein of unknown function (DUF2572) 10 207 3.3E-8 T 11-10-2018 IPR022543 Protein of unknown function DUF2572 APJL_0222 c576df1ad5419151234ce5c8d7b83a6a 108 PIRSF PIRSF020555 1 108 6.5E-21 T 11-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats APJL_0222 c576df1ad5419151234ce5c8d7b83a6a 108 SUPERFAMILY SSF48452 35 104 5.58E-5 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0222 c576df1ad5419151234ce5c8d7b83a6a 108 Gene3D G3DSA:1.25.40.10 12 108 1.6E-6 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0222 c576df1ad5419151234ce5c8d7b83a6a 108 Pfam PF16068 Domain of unknown function (DUF4810) 22 104 4.1E-28 T 11-10-2018 IPR014508 Uncharacterised conserved protein withTPR-like repeats APJL_1074 20d48c1fc6f3d65dfa2e69bd1b032d4a 169 SUPERFAMILY SSF46689 57 161 8.06E-12 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1074 20d48c1fc6f3d65dfa2e69bd1b032d4a 169 Pfam PF13518 Helix-turn-helix domain 65 118 2.2E-9 T 11-10-2018 APJL_1074 20d48c1fc6f3d65dfa2e69bd1b032d4a 169 Pfam PF13518 Helix-turn-helix domain 8 53 9.6E-6 T 11-10-2018 APJL_1074 20d48c1fc6f3d65dfa2e69bd1b032d4a 169 SUPERFAMILY SSF46689 1 52 1.59E-6 T 11-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 APJL_1712 8ea7754ba2421943ed9a981e578af8b0 146 Pfam PF07751 Abi-like protein 2 55 1.2E-15 T 11-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like APJL_1449 9b4f96c67f8f8c58a4f975ef0c9395f9 141 Pfam PF05232 Chlorhexidine efflux transporter 4 65 9.7E-17 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter APJL_1449 9b4f96c67f8f8c58a4f975ef0c9395f9 141 Pfam PF05232 Chlorhexidine efflux transporter 71 133 1.9E-22 T 11-10-2018 IPR007896 Chlorhexidine efflux transporter APJL_2076 59e59845eb4b24188fbd5e711bb313ab 250 Gene3D G3DSA:3.20.20.70 6 250 1.9E-91 T 11-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 APJL_2076 59e59845eb4b24188fbd5e711bb313ab 250 Pfam PF00977 Histidine biosynthesis protein 7 238 1.3E-75 T 11-10-2018 IPR006062 Histidine biosynthesis GO:0000105 APJL_2076 59e59845eb4b24188fbd5e711bb313ab 250 SUPERFAMILY SSF51366 6 248 1.08E-64 T 11-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 APJL_2076 59e59845eb4b24188fbd5e711bb313ab 250 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 6 246 34.698 T 11-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 APJL_2076 59e59845eb4b24188fbd5e711bb313ab 250 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 7 242 2.4E-78 T 11-10-2018 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 APJL_1673 d644aa14d89ec3eae6c095e909c727f8 239 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 24 136 5.7E-27 T 11-10-2018 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 APJL_1673 d644aa14d89ec3eae6c095e909c727f8 239 Gene3D G3DSA:1.10.287.460 17 126 3.2E-15 T 11-10-2018 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily GO:0006457 APJL_1673 d644aa14d89ec3eae6c095e909c727f8 239 SUPERFAMILY SSF54534 30 233 1.2E-56 T 11-10-2018 APJL_1673 d644aa14d89ec3eae6c095e909c727f8 239 Gene3D G3DSA:3.10.50.40 127 239 5.1E-42 T 11-10-2018 APJL_1673 d644aa14d89ec3eae6c095e909c727f8 239 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 144 230 2.8E-29 T 11-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain APJL_1600 053f3ae248e0a0dcd3daf1f8bc3d0c33 222 Pfam PF01618 MotA/TolQ/ExbB proton channel family 74 204 6.5E-35 T 11-10-2018 IPR002898 MotA/TolQ/ExbB proton channel APJL_0179 1a6ca5a2a2566ed2d6cf4cffabd90819 73 Pfam PF13617 YnbE-like lipoprotein 5 58 3.2E-22 T 11-10-2018 IPR025985 YnbE-like lipoprotein APJL_0179 1a6ca5a2a2566ed2d6cf4cffabd90819 73 ProDom PD052969 LIPOPROTEIN PRECURSOR SIGNAL YNBE MEMBRANE OUTER POSSIBLE SIMILAR ECS2004 SO2063 14 58 2.0E-6 T 11-10-2018 APJL_1142 220e900ed18975e51009ca73808a1fa1 237 Pfam PF14256 YwiC-like protein 8 131 2.0E-36 T 11-10-2018 IPR025576 YwiC-like protein APJL_0541 17fb0d42f840567bde02b1057cb622f9 161 Pfam PF07811 TadE-like protein 14 56 9.1E-7 T 11-10-2018 IPR012495 TadE-like APJL_0789 6069a62ef82845972a4a3dcc79e57deb 663 Pfam PF12532 Protein of unknown function (DUF3732) 458 659 6.2E-61 T 11-10-2018 IPR022205 Protein of unknown function DUF3732 APJL_0789 6069a62ef82845972a4a3dcc79e57deb 663 Gene3D G3DSA:3.40.50.300 13 268 1.5E-6 T 11-10-2018 APJL_0474 bcc749882b551785a85620c26ec64979 531 Pfam PF02652 L-lactate permease 4 522 3.4E-153 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 APJL_0474 bcc749882b551785a85620c26ec64979 531 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 3 525 3.3E-152 T 11-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 APJL_0960 17106fdb4e925e590e3bacb9c8db3a14 344 SMART SM00901 106 210 1.4E-9 T 11-10-2018 IPR014966 FRG domain APJL_0960 17106fdb4e925e590e3bacb9c8db3a14 344 Pfam PF08867 FRG domain 111 200 3.2E-15 T 11-10-2018 IPR014966 FRG domain APJL_1020 66528fce7948fa973407ba4b8535308c 217 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 7 206 6.4E-68 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APJL_1020 66528fce7948fa973407ba4b8535308c 217 Pfam PF01914 MarC family integral membrane protein 9 210 3.7E-63 T 11-10-2018 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 APJL_2042 f227928268242f485e16c0c251f18597 248 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 46 226 32.769 T 11-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 APJL_2042 f227928268242f485e16c0c251f18597 248 Pfam PF02677 Uncharacterized BCR, COG1636 46 224 1.7E-59 T 11-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 APJL_0141 7dbe8104c8c2747fe626893f14a7100e 371 Pfam PF05651 Putative sugar diacid recognition 6 139 6.7E-50 T 11-10-2018 IPR008599 Putative sugar diacid recognition APJL_0141 7dbe8104c8c2747fe626893f14a7100e 371 Pfam PF13556 PucR C-terminal helix-turn-helix domain 311 366 1.3E-17 T 11-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain APJL_0141 7dbe8104c8c2747fe626893f14a7100e 371 Gene3D G3DSA:1.10.10.2840 245 371 7.4E-18 T 11-10-2018 APJL_1966 458bc32b3f523f9abe9b2186dc0b4bbd 269 Gene3D G3DSA:2.70.98.10 1 268 6.3E-78 T 11-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 APJL_1966 458bc32b3f523f9abe9b2186dc0b4bbd 269 Pfam PF01263 Aldose 1-epimerase 24 262 1.7E-39 T 11-10-2018 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 APJL_1966 458bc32b3f523f9abe9b2186dc0b4bbd 269 PIRSF PIRSF016020 6 269 3.5E-40 T 11-10-2018 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 APJL_1966 458bc32b3f523f9abe9b2186dc0b4bbd 269 SUPERFAMILY SSF74650 2 265 3.01E-77 T 11-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 APJL_1731 9cce9d7465916a5e7c743163cd37c745 155 Gene3D G3DSA:3.40.930.10 1 154 1.9E-49 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_1731 9cce9d7465916a5e7c743163cd37c745 155 SUPERFAMILY SSF55804 4 151 2.75E-34 T 11-10-2018 IPR016152 Phosphotransferase/anion transporter Reactome: R-HSA-425381 APJL_1731 9cce9d7465916a5e7c743163cd37c745 155 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 151 1.4E-32 T 11-10-2018 IPR002178 PTS EIIA type-2 domain APJL_0437 7baf8e11efd000ea6330614e7b14185c 289 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 246 272 - T 11-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 APJL_0437 7baf8e11efd000ea6330614e7b14185c 289 Pfam PF01148 Cytidylyltransferase family 3 286 3.8E-68 T 11-10-2018 APJL_0476 06c05271ebf49dbe0cda1067868d643a 505 Pfam PF03553 Na+/H+ antiporter family 164 476 1.0E-90 T 11-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 APJL_1194 6cbb022129952f6218f9991aba00e3f1 230 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 42 226 2.6E-55 T 11-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 APJL_1194 6cbb022129952f6218f9991aba00e3f1 230 Pfam PF04973 Nicotinamide mononucleotide transporter 42 222 1.1E-38 T 11-10-2018 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 APJL_0542 613f3dc6c192644bf1610c0205c23e3d 250 SUPERFAMILY SSF48452 109 225 3.8E-12 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_0542 613f3dc6c192644bf1610c0205c23e3d 250 Gene3D G3DSA:1.25.40.10 8 241 5.0E-16 T 11-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 APJL_1098 d510e0e7bdde014165e6a1d4e77926c6 471 Gene3D G3DSA:1.20.1740.10 1 458 2.0E-59 T 11-10-2018 APJL_1098 d510e0e7bdde014165e6a1d4e77926c6 471 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 462 3.4E-151 T 11-10-2018 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 APJL_1098 d510e0e7bdde014165e6a1d4e77926c6 471 PIRSF PIRSF006060 1 470 3.3E-55 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APJL_1098 d510e0e7bdde014165e6a1d4e77926c6 471 Pfam PF13520 Amino acid permease 6 410 2.7E-75 T 11-10-2018 IPR002293 Amino acid/polyamine transporter I GO:0016020|GO:0022857|GO:0055085 APJL_1137 b1fca128edc806423ed52c215fc8c507 156 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 5 78 1.3E-7 T 11-10-2018 IPR002654 Glycosyl transferase, family 25 APJL_0419 dcf26a583ffc989e69032a5b9ce737df 208 Gene3D G3DSA:3.40.50.2020 1 208 5.2E-73 T 11-10-2018 APJL_0419 dcf26a583ffc989e69032a5b9ce737df 208 SUPERFAMILY SSF53271 4 206 3.28E-68 T 11-10-2018 IPR029057 Phosphoribosyltransferase-like APJL_0419 dcf26a583ffc989e69032a5b9ce737df 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 3.6E-91 T 11-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APJL_0419 dcf26a583ffc989e69032a5b9ce737df 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.567 T 11-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 APJL_0419 dcf26a583ffc989e69032a5b9ce737df 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 3.0E-65 T 11-10-2018 APJL_1531 91a9824f1d38f24d2ffb1c68fc9d12dc 145 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 140 4.8E-42 T 11-10-2018 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 APJL_1531 91a9824f1d38f24d2ffb1c68fc9d12dc 145 Gene3D G3DSA:3.40.50.10110 1 144 1.7E-52 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily APJL_1531 91a9824f1d38f24d2ffb1c68fc9d12dc 145 SUPERFAMILY SSF102400 1 144 6.28E-48 T 11-10-2018 IPR036768 DNA polymerase III subunit chi superfamily APJL_0847 fb2513e60fef2c42b32b87efbf9d3379 374 Pfam PF12698 ABC-2 family transporter protein 26 364 5.7E-33 T 11-10-2018 APJL_2032 457ac49cdb434f62bf9960f6402a2bf2 544 Pfam PF03109 ABC1 family 112 235 3.0E-32 T 11-10-2018 IPR004147 UbiB domain APJL_2032 457ac49cdb434f62bf9960f6402a2bf2 544 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 542 55.431 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 APJL_2032 457ac49cdb434f62bf9960f6402a2bf2 544 SUPERFAMILY SSF56112 94 439 1.47E-42 T 11-10-2018 IPR011009 Protein kinase-like domain superfamily APJL_2032 457ac49cdb434f62bf9960f6402a2bf2 544 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 449 4.9E-176 T 11-10-2018 IPR010232 Probable protein kinase UbiB GO:0006744 APJL_0180 d5801e8754e75e28df3c10769a6b9618 909 Pfam PF11739 Dicarboxylate transport 696 897 2.8E-52 T 11-10-2018 IPR021730 Dicarboxylate transport APJL_1217 d16f4913531743eae94b80d072110efe 285 Pfam PF00756 Putative esterase 24 272 1.4E-64 T 11-10-2018 IPR000801 Putative esterase Reactome: R-HSA-156590 APJL_1217 d16f4913531743eae94b80d072110efe 285 Gene3D G3DSA:3.40.50.1820 5 280 2.3E-97 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1217 d16f4913531743eae94b80d072110efe 285 SUPERFAMILY SSF53474 4 278 4.22E-92 T 11-10-2018 IPR029058 Alpha/Beta hydrolase fold APJL_1217 d16f4913531743eae94b80d072110efe 285 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 7 278 1.6E-117 T 11-10-2018 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801|Reactome: R-HSA-156590 APJL_0498 ee73ee4d736948e255471af76915d3c9 97 ProDom PD394905 PM1122 UNCHARACTERIZED 5 81 3.0E-15 T 11-10-2018 APJL_1046 258c00e9b8d99d398977e823a20a7356 256 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 2 185 2.2E-39 T 11-10-2018 IPR002654 Glycosyl transferase, family 25 APJL_0514 a283c1025f32e92c20e62608582bc8bd 252 Gene3D G3DSA:3.40.50.620 71 210 1.8E-6 T 11-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold APJL_0514 a283c1025f32e92c20e62608582bc8bd 252 Pfam PF02698 DUF218 domain 83 244 2.0E-27 T 11-10-2018 IPR003848 Domain of unknown function DUF218 APJL_1317 d5d0847d89306deb726010558247462d 293 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 12 252 26.642 T 11-10-2018 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 APJL_1317 d5d0847d89306deb726010558247462d 293 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 18 234 1.2E-36 T 11-10-2018 APJL_0901 4f738f0a3c8af11858467d01f1cfd1f7 471 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 452 2.1E-85 T 11-10-2018 IPR010352 Protein of unknown function DUF945 APJL_0106 6d5fd44f5835daaa69e6b61a8108d7e9 409 Pfam PF00860 Permease family 11 376 2.3E-100 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 APJL_0106 6d5fd44f5835daaa69e6b61a8108d7e9 409 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 9 399 8.8E-122 T 11-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 APJL_1572 5952e9e3dffc92dac29df79136719911 444 Pfam PF06899 WzyE protein, O-antigen assembly polymerase 4 428 3.1E-129 T 11-10-2018 IPR010691 Probable ECA polymerase WzyE GO:0009246|GO:0016021 APJL_1671 af5cff770b0b7af0db29c6d9dad4b811 235 SUPERFAMILY SSF52833 41 227 1.94E-24 T 11-10-2018 IPR036249 Thioredoxin-like superfamily APJL_1671 af5cff770b0b7af0db29c6d9dad4b811 235 Gene3D G3DSA:3.40.30.10 42 235 3.4E-20 T 11-10-2018 APJL_1610 d7bd13fd84bcee517c3fcf6e8b6e6224 456 Gene3D G3DSA:3.40.50.2000 268 437 1.9E-40 T 11-10-2018 APJL_1610 d7bd13fd84bcee517c3fcf6e8b6e6224 456 Gene3D G3DSA:3.40.50.2000 165 267 1.9E-40 T 11-10-2018 APJL_1610 d7bd13fd84bcee517c3fcf6e8b6e6224 456 Pfam PF00534 Glycosyl transferases group 1 293 440 3.9E-27 T 11-10-2018 IPR001296 Glycosyl transferase, family 1 APJL_1610 d7bd13fd84bcee517c3fcf6e8b6e6224 456 SUPERFAMILY SSF53756 73 429 8.37E-45 T 11-10-2018 APJL_1240 7a525d6b7a143ac01b17f79a0e962f64 220 Pfam PF10144 Bacterial virulence factor haemolysin 4 157 1.2E-58 T 11-10-2018 IPR019305 Uncharacterised protein family Smp APJL_1958 ef40875aa2db07c8f271f00fa666e371 375 Pfam PF02653 Branched-chain amino acid transport system / permease component 38 365 2.9E-53 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APJL_1982 e15136dafd1679873658ce646d896c2a 212 Pfam PF07670 Nucleoside recognition 65 159 2.6E-7 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 APJL_0902 ad799b8c23d4d608279e06ab802323ec 310 Pfam PF03547 Membrane transport protein 9 150 1.3E-12 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APJL_0902 ad799b8c23d4d608279e06ab802323ec 310 Pfam PF03547 Membrane transport protein 155 304 1.2E-11 T 11-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 APJL_0740 a7d072fb063283c7e693da497f607ee0 96 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 94 22.126 T 11-10-2018 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 APJL_0740 a7d072fb063283c7e693da497f607ee0 96 Pfam PF06305 Lipopolysaccharide assembly protein A domain 23 85 6.6E-17 T 11-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 APJL_0356 28f9c8c8d29f99fead60f380fc6a285b 267 Pfam PF04536 TPM domain 37 162 1.2E-37 T 11-10-2018 IPR007621 TPM domain APJL_0356 28f9c8c8d29f99fead60f380fc6a285b 267 Gene3D G3DSA:3.10.310.50 26 171 9.7E-49 T 11-10-2018 APJL_0722 59a74ad9ff0edeb5d1024877bd770656 171 Pfam PF01814 Hemerythrin HHE cation binding domain 15 142 2.7E-12 T 11-10-2018 IPR012312 Haemerythrin-like Reactome: R-HSA-390471|Reactome: R-HSA-8951664|Reactome: R-HSA-917937|Reactome: R-HSA-983168 APJL_0722 59a74ad9ff0edeb5d1024877bd770656 171 Gene3D G3DSA:1.20.120.520 2 170 1.7E-40 T 11-10-2018 APJL_0205 9aac300a175968f6c43e3398bc4c2571 207 Pfam PF01810 LysE type translocator 9 199 4.4E-38 T 11-10-2018 IPR001123 Amino acid exporter protein, LeuE-type GO:0006865|GO:0016020 APJL_1900 2436d7f4f1889bae74436a3b7cec08fd 117 Pfam PF02411 MerT mercuric transport protein 14 115 2.0E-10 T 11-10-2018 IPR003457 Mercuric transport protein MerT GO:0015097|GO:0015694|GO:0016020 APJL_0539 78bc7fc4022dfc5753a30c3b4ec937b8 529 SUPERFAMILY SSF53300 184 516 1.98E-8 T 11-10-2018 IPR036465 von Willebrand factor A-like domain superfamily APJL_0748 edc52987dd8954dee57427748e9eadbb 276 Gene3D G3DSA:3.30.1380.10 21 275 1.4E-95 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 APJL_0748 edc52987dd8954dee57427748e9eadbb 276 SUPERFAMILY SSF55166 22 273 1.96E-105 T 11-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 APJL_0748 edc52987dd8954dee57427748e9eadbb 276 PIRSF PIRSF018455 4 276 8.4E-116 T 11-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 APJL_0748 edc52987dd8954dee57427748e9eadbb 276 Pfam PF03411 Penicillin-insensitive murein endopeptidase 38 270 1.2E-96 T 11-10-2018 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase GO:0004252|GO:0006508|GO:0030288 APJL_1981 e3eeabec1ab8165e88d6fc98b69e09f5 154 Pfam PF07670 Nucleoside recognition 29 119 6.8E-6 T 11-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 APJL_1711 9bd232374882c05981c5b823d0f57c74 163 Pfam PF07751 Abi-like protein 34 157 8.5E-28 T 11-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like APJL_0451 18dc4df1f4a64d6687c610b6ce104a0e 151 Pfam PF17311 Family of unknown function (DUF5358) 31 133 2.7E-11 T 11-10-2018 IPR035279 Protein of unknown function DUF5358 APJL_1697 0f6635909db9849c86c57aa4f1639e1c 171 Pfam PF01202 Shikimate kinase 14 167 1.6E-12 T 11-10-2018 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 APJL_1697 0f6635909db9849c86c57aa4f1639e1c 171 SUPERFAMILY SSF52540 2 168 3.06E-30 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_1697 0f6635909db9849c86c57aa4f1639e1c 171 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 7 167 1.3E-67 T 11-10-2018 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 APJL_1697 0f6635909db9849c86c57aa4f1639e1c 171 Gene3D G3DSA:3.40.50.300 1 170 5.4E-65 T 11-10-2018 APJL_0806 23ce1f28bd4d89158ed5c9656711d7ff 92 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 34.921 T 11-10-2018 IPR023081 Cell division protein FtsB APJL_0806 23ce1f28bd4d89158ed5c9656711d7ff 92 Pfam PF04977 Septum formation initiator 11 89 4.7E-24 T 11-10-2018 IPR007060 Septum formation initiator FtsL/DivIC APJL_1388 2909ed501a0d07c8fded3bb0aac42c8e 243 Pfam PF01578 Cytochrome C assembly protein 6 184 1.6E-32 T 11-10-2018 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 APJL_1388 2909ed501a0d07c8fded3bb0aac42c8e 243 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 227 7.0E-78 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1388 2909ed501a0d07c8fded3bb0aac42c8e 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 204 228 5.4E-56 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1388 2909ed501a0d07c8fded3bb0aac42c8e 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 5.4E-56 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1388 2909ed501a0d07c8fded3bb0aac42c8e 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 5.4E-56 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1388 2909ed501a0d07c8fded3bb0aac42c8e 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 5.4E-56 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1388 2909ed501a0d07c8fded3bb0aac42c8e 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 5.4E-56 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1388 2909ed501a0d07c8fded3bb0aac42c8e 243 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 5.4E-56 T 11-10-2018 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 APJL_1666 aac38103d39bae0c769270ee88ba5146 66 Pfam PF05433 Glycine zipper 2TM domain 30 65 3.0E-9 T 11-10-2018 IPR008816 Glycine zipper 2TM domain GO:0019867 APJL_1041 cf3bb8073735dc5e153882bcae113a55 142 Pfam PF00892 EamA-like transporter family 41 142 1.9E-7 T 11-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 APJL_0607 8100be3279993132cad26502e0aa13f9 107 Pfam PF13276 HTH-like domain 35 88 1.5E-16 T 11-10-2018 IPR025948 HTH-like domain APJL_2062 854b915fb086337bdb12894eea5820c7 189 Pfam PF01184 GPR1/FUN34/yaaH family 7 176 1.6E-43 T 11-10-2018 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 APJL_0758 12e0dac02721ed26712469fd192500fb 92 Pfam PF14384 BrnA antitoxin of type II toxin-antitoxin system 11 88 2.3E-24 T 11-10-2018 IPR025528 BrnA antitoxin of type II toxin-antitoxin system APJL_0599 cdcb11b2418b1944b4fb0410083e85e9 256 PIRSF PIRSF029037 1 256 6.3E-98 T 11-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 APJL_0599 cdcb11b2418b1944b4fb0410083e85e9 256 Pfam PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) 1 254 2.8E-107 T 11-10-2018 IPR016908 Uncharacterised conserved protein UCP029037 APJL_1840 875f14f2846c2efa159f026c4285b9da 96 Pfam PF17347 Family of unknown function (DUF5377) 1 96 9.9E-50 T 11-10-2018 IPR035318 Protein of unknown function DUF5377 APJL_1840 875f14f2846c2efa159f026c4285b9da 96 ProDom PD050153 PM1128 HI0234 52 95 3.0E-14 T 11-10-2018 IPR035318 Protein of unknown function DUF5377 APJL_1387 035027fa1f2767580d0897e1473cc335 65 Pfam PF04995 Heme exporter protein D (CcmD) 15 57 2.2E-19 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 APJL_1387 035027fa1f2767580d0897e1473cc335 65 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 12 57 8.4E-20 T 11-10-2018 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 APJL_0719 42e6f99876d937638b1ae2c50b58af04 420 Pfam PF01384 Phosphate transporter family 26 408 3.6E-107 T 11-10-2018 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 APJL_0546 619c4e3a793f18ea95f2b430505d8b33 375 Gene3D G3DSA:3.40.50.300 146 363 1.2E-10 T 11-10-2018 APJL_0546 619c4e3a793f18ea95f2b430505d8b33 375 SUPERFAMILY SSF52540 144 349 6.07E-12 T 11-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase APJL_0540 f70b3b416c58b3b3dbefd758ca976172 254 Pfam PF16964 Putative tight adherence pilin protein F 62 254 6.1E-60 T 11-10-2018 IPR031582 Putative tight adherence pilin protein F APJL_0090 2209b4c343dbbbc22d1eb91d9abb2702 154 Pfam PF04186 FxsA cytoplasmic membrane protein 10 115 2.5E-29 T 11-10-2018 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 APJL_0765 1ad92b21c40100bdb5732f69a2698d42 353 Pfam PF01594 AI-2E family transporter 20 346 9.8E-76 T 11-10-2018 IPR002549 Transmembrane protein TqsA-like APJL_0968 30527335c054c2c84176624dae6c34c7 160 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 75 97 8.9E-34 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_0968 30527335c054c2c84176624dae6c34c7 160 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 11 27 8.9E-34 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_0968 30527335c054c2c84176624dae6c34c7 160 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 130 151 8.9E-34 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_0968 30527335c054c2c84176624dae6c34c7 160 PRINTS PR01489 Gram-negative bacterial RTX toxin-activating protein C signature 53 71 8.9E-34 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_0968 30527335c054c2c84176624dae6c34c7 160 Pfam PF02794 RTX toxin acyltransferase family 9 132 7.4E-42 T 11-10-2018 IPR003996 RTX toxin-activating protein C, bacteria GO:0005737|GO:0009404|GO:0016746 APJL_1400 c6e4f88da5fe4c18896eb852b31657a6 113 Pfam PF04320 Protein with unknown function (DUF469) 8 107 1.3E-37 T 11-10-2018 IPR007416 Protein of unknown function DUF469 APJL_0142 3d4a5eb28ab980d6204c522527ff7e92 420 Pfam PF02447 GntP family permease 7 414 1.4E-24 T 11-10-2018 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 APJL_1552 eea46a5d380b5b8cfcf0238856f59680 37 Pfam PF13627 Prokaryotic lipoprotein-attachment site 6 27 1.2E-9 T 11-10-2018 IPR032831 Prokaryotic lipoprotein-attachment site APJL_0597 b5484f29cf57bdcd12dcfe736f84c3c6 181 ProDom PD487572 PRECURSOR PM0067 HI0983 SIGNAL 25 180 1.0E-41 T 11-10-2018 APJL_0993 bb4843873b70949f823f8b60ed7eed81 144 Pfam PF04217 Protein of unknown function, DUF412 3 142 2.0E-50 T 11-10-2018 IPR007334 Uncharacterised protein family UPF0208 APJL_0827 60a3da98b249bc8673ccd6992a145dae 200 Pfam PF09335 SNARE associated Golgi protein 29 156 6.4E-25 T 11-10-2018 IPR032816 SNARE associated Golgi protein APJL_0547 2c67762d90db5fa0e8c0c908c0a0f2e1 167 Pfam PF16971 Rough colony protein B, tight adherence - tad - subunit 1 167 1.5E-79 T 11-10-2018 IPR031579 Rough colony protein B APJL_0095 fcb40b7135505d4f069201dfcb1065c7 138 Pfam PF05656 Protein of unknown function (DUF805) 8 131 5.6E-15 T 11-10-2018 IPR008523 Protein of unknown function DUF805 GO:0016021 APJL_0519 cdb09b0e60013d32054fcb69cfac84d5 287 Pfam PF03824 High-affinity nickel-transport protein 13 274 2.5E-44 T 11-10-2018 IPR011541 Nickel/cobalt transporter, high-affinity GO:0015099|GO:0016021|GO:0035444|GO:0046872 APJL_0946 8d00c5e6be3da463935dd12a08e41c3f 287 SUPERFAMILY SSF103481 187 286 3.79E-6 T 11-10-2018 APJL_1000 06e67027cd36ef997a42daecaa9d60e8 227 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 10 193 1.8E-38 T 11-10-2018 IPR002654 Glycosyl transferase, family 25 APJL_1026 ea59ee76da8edab1df3a68af3aad7c82 446 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 64 405 4.3E-122 T 11-10-2018 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX APJL_0200 6cb293460813ee2496af5891f9de7ea5 134 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 65 127 7.0E-16 T 11-10-2018 APJL_1951 5ff9d37d4a09e7ce63d91acb9ba062e9 284 Pfam PF00872 Transposase, Mutator family 71 167 5.1E-5 T 11-10-2018 IPR001207 Transposase, mutator type GO:0003677|GO:0004803|GO:0006313 APJL_0301 e24fe59f5f53a9c860f4c4aac3306a6b 192 Pfam PF07751 Abi-like protein 2 108 1.4E-24 T 11-10-2018 IPR011664 Abortive infection system protein AbiD/AbiF-like APJL_0937 33b299daf275a1dbb0592b45df7ddb6f 150 Pfam PF04657 Putative inner membrane exporter, YdcZ 5 142 4.8E-41 T 11-10-2018 IPR006750 Putative inner membrane exporter, YdcZ APJL_0391 95564f7e921bc2e10aca0608f0eb6830 200 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 23 195 3.2E-39 T 11-10-2018 IPR018635 Uncharacterised protein family UPF0319 APJL_1138 7af4f55fa7fb083bd5e4a19bacf2f4bf 100 Pfam PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) 7 99 8.5E-28 T 11-10-2018 IPR002654 Glycosyl transferase, family 25 APJL_0311 c97180137368f06624d0d3f894bc905c 100 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 2 93 3.5E-31 T 11-10-2018 IPR011846 Cyd operon protein YbgE APJL_0311 c97180137368f06624d0d3f894bc905c 100 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 14 91 2.9E-22 T 11-10-2018 IPR011846 Cyd operon protein YbgE APJL_1851 cec4ef945a23ec0d1a1b0573f51b1171 258 Pfam PF06629 MltA-interacting protein MipA 30 258 1.1E-41 T 11-10-2018 IPR010583 MltA-interacting MipA APJL_1494 9d5819d06d8bf5b16dfdafe481738810 159 Pfam PF01757 Acyltransferase family 4 152 6.8E-19 T 11-10-2018 IPR002656 Acyltransferase 3 GO:0016747 APJL_1573 ee442a03f01728fe0343db79136b163b 356 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 1 352 1.4E-162 T 11-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 APJL_1576 9f396214feb1efe47a2b6ec697016431 416 Pfam PF13440 Polysaccharide biosynthesis protein 38 331 5.1E-10 T 11-10-2018 APJL_1702 d32a84749e1737fbe96bd106007ea0fb 319 Pfam PF02653 Branched-chain amino acid transport system / permease component 39 307 1.5E-53 T 11-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 APJL_1845 b30b8fea8310e408701d9250aeae344a 174 Pfam PF07509 Protein of unknown function (DUF1523) 5 170 2.1E-65 T 11-10-2018 IPR011088 Bacteriophage phiNM3, A0EWY4 APJL_0370 61a489d8265845355795f59b28da23d8 53 Pfam PF06803 Protein of unknown function (DUF1232) 9 45 8.6E-11 T 11-10-2018 IPR010652 Domain of unknown function DUF1232 MetaCyc: PWY-7511 APJL_0735 a74e76f5847b83621946837f9080da3b 237 Pfam PF04474 Protein of unknown function (DUF554) 3 229 1.2E-69 T 11-10-2018 IPR007563 Protein of unknown function DUF554 APJL_1087 f6bd9b447767f62b21a74dd76c0ff15d 433 Pfam PF00860 Permease family 14 393 1.6E-84 T 11-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085