locus-tag class description D1097_00005 PF00308 Bacterial dnaA protein D1097_00005 PF08299 Bacterial dnaA protein helix-turn-helix D1097_00005 PF11638 DnaA N-terminal domain D1097_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D1097_00010 PF02767 DNA polymerase III beta subunit, central domain D1097_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D1097_00015 PF02463 RecF/RecN/SMC N terminal domain D1097_00020 PF00080 Copper/zinc superoxide dismutase (SODC) D1097_00025 PF02774 Semialdehyde dehydrogenase, dimerisation domain D1097_00025 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1097_00035 PF02684 Lipid-A-disaccharide synthetase D1097_00040 PF01343 Peptidase family S49 D1097_00040 PF08496 Peptidase family S49 N-terminal D1097_00045 PF02381 MraZ protein, putative antitoxin-like D1097_00050 PF01795 MraW methylase family D1097_00055 PF04999 Cell division protein FtsL D1097_00060 PF00905 Penicillin binding protein transpeptidase domain D1097_00060 PF03717 Penicillin-binding Protein dimerisation domain D1097_00065 PF01225 Mur ligase family, catalytic domain D1097_00065 PF02875 Mur ligase family, glutamate ligase domain D1097_00065 PF08245 Mur ligase middle domain D1097_00070 PF01225 Mur ligase family, catalytic domain D1097_00070 PF02875 Mur ligase family, glutamate ligase domain D1097_00070 PF08245 Mur ligase middle domain D1097_00075 PF00953 Glycosyl transferase family 4 D1097_00075 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D1097_00080 PF02875 Mur ligase family, glutamate ligase domain D1097_00080 PF08245 Mur ligase middle domain D1097_00085 PF01098 Cell cycle protein D1097_00090 PF04101 Glycosyltransferase family 28 C-terminal domain D1097_00090 PF03033 Glycosyltransferase family 28 N-terminal domain D1097_00095 PF01225 Mur ligase family, catalytic domain D1097_00095 PF02875 Mur ligase family, glutamate ligase domain D1097_00095 PF08245 Mur ligase middle domain D1097_00100 PF01820 D-ala D-ala ligase N-terminus D1097_00100 PF07478 D-ala D-ala ligase C-terminus D1097_00105 PF03799 Cell division protein FtsQ D1097_00105 PF08478 POTRA domain, FtsQ-type D1097_00110 PF02491 SHS2 domain inserted in FTSA D1097_00115 PF12327 FtsZ family, C-terminal domain D1097_00115 PF00091 Tubulin/FtsZ family, GTPase domain D1097_00120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D1097_00125 PF02463 RecF/RecN/SMC N terminal domain D1097_00130 PF00005 ABC transporter D1097_00130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1097_00135 PF00528 Binding-protein-dependent transport system inner membrane component D1097_00135 PF12911 N-terminal TM domain of oligopeptide transport permease C D1097_00140 PF00528 Binding-protein-dependent transport system inner membrane component D1097_00145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1097_00150 PF16658 Class II release factor RF3, C-terminal domain D1097_00150 PF03144 Elongation factor Tu domain 2 D1097_00150 PF00009 Elongation factor Tu GTP binding domain D1097_00165 PF01195 Peptidyl-tRNA hydrolase D1097_00170 PF01926 50S ribosome-binding GTPase D1097_00170 PF06071 Protein of unknown function (DUF933) D1097_00185 PF05433 Glycine zipper 2TM domain D1097_00190 PF06185 YecM protein D1097_00195 PF03485 Arginyl tRNA synthetase N terminal domain D1097_00195 PF05746 DALR anticodon binding domain D1097_00195 PF00750 tRNA synthetases class I (R) D1097_00200 PF01018 GTP1/OBG D1097_00200 PF01926 50S ribosome-binding GTPase D1097_00205 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) D1097_00210 PF00588 SpoU rRNA Methylase family D1097_00210 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1097_00215 PF13091 PLD-like domain D1097_00220 PF08264 Anticodon-binding domain of tRNA D1097_00220 PF00133 tRNA synthetases class I (I, L, M and V) D1097_00220 PF06827 Zinc finger found in FPG and IleRS D1097_00225 PF01687 Riboflavin kinase D1097_00225 PF06574 FAD synthetase D1097_00230 PF13521 AAA domain D1097_00230 PF01467 Cytidylyltransferase-like D1097_00235 PF00149 Calcineurin-like phosphoesterase D1097_00240 PF00072 Response regulator receiver domain D1097_00240 PF00486 Transcriptional regulatory protein, C terminal D1097_00255 PF01168 Alanine racemase, N-terminal domain D1097_00260 PF03144 Elongation factor Tu domain 2 D1097_00260 PF00679 Elongation factor G C-terminus D1097_00260 PF00009 Elongation factor Tu GTP binding domain D1097_00265 PF00462 Glutaredoxin D1097_00270 PF01138 3' exoribonuclease family, domain 1 D1097_00270 PF03725 3' exoribonuclease family, domain 2 D1097_00275 PF08340 Domain of unknown function (DUF1732) D1097_00275 PF03755 YicC-like family, N-terminal region D1097_00280 PF01571 Aminomethyltransferase folate-binding domain D1097_00285 PF00037 4Fe-4S binding domain D1097_00290 PF00196 Bacterial regulatory proteins, luxR family D1097_00290 PF00072 Response regulator receiver domain D1097_00295 PF01170 Putative RNA methylase family UPF0020 D1097_00295 PF02926 THUMP domain D1097_00295 PF10672 S-adenosylmethionine-dependent methyltransferase D1097_00300 PF00588 SpoU rRNA Methylase family D1097_00310 PF00923 Transaldolase/Fructose-6-phosphate aldolase D1097_00340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1097_00345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1097_00350 PF00528 Binding-protein-dependent transport system inner membrane component D1097_00355 PF00528 Binding-protein-dependent transport system inner membrane component D1097_00355 PF12911 N-terminal TM domain of oligopeptide transport permease C D1097_00360 PF00005 ABC transporter D1097_00360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1097_00365 PF00005 ABC transporter D1097_00365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1097_00370 PF06146 Phosphate-starvation-inducible E D1097_00380 PF01042 Endoribonuclease L-PSP D1097_00385 PF01063 Amino-transferase class IV D1097_00390 PF00462 Glutaredoxin D1097_00395 PF02132 RecR protein D1097_00395 PF13662 Toprim domain D1097_00400 PF02575 YbaB/EbfC DNA-binding family D1097_00405 PF03544 Gram-negative bacterial TonB protein C-terminal D1097_00410 PF02472 Biopolymer transport protein ExbD/TolR D1097_00415 PF01618 MotA/TolQ/ExbB proton channel family D1097_00420 PF00581 Rhodanese-like domain D1097_00430 PF03610 PTS system fructose IIA component D1097_00430 PF05524 PEP-utilising enzyme, N-terminal D1097_00430 PF00391 PEP-utilising enzyme, mobile domain D1097_00430 PF00381 PTS HPr component phosphorylation site D1097_00435 PF02734 DAK2 domain D1097_00440 PF02733 Dak1 domain D1097_00445 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1097_00450 PF02348 Cytidylyltransferase D1097_00455 PF06078 Bacterial protein of unknown function (DUF937) D1097_00460 PF00293 NUDIX domain D1097_00460 PF09297 NADH pyrophosphatase zinc ribbon domain D1097_00465 PF00849 RNA pseudouridylate synthase D1097_00475 PF04186 FxsA cytoplasmic membrane protein D1097_00480 PF00557 Metallopeptidase family M24 D1097_00485 PF01206 Sulfurtransferase TusA D1097_00490 PF06877 Regulator of ribonuclease activity B D1097_00495 PF01926 50S ribosome-binding GTPase D1097_00505 PF02535 ZIP Zinc transporter D1097_00510 PF00920 Dehydratase family D1097_00520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1097_00520 PF00205 Thiamine pyrophosphate enzyme, central domain D1097_00520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1097_00525 PF02335 Cytochrome c552 D1097_00535 PF13247 4Fe-4S dicluster domain D1097_00540 PF03916 Polysulphide reductase, NrfD D1097_00545 PF05662 Coiled stalk of trimeric autotransporter adhesin D1097_00545 PF05658 Head domain of trimeric autotransporter adhesin D1097_00545 PF03895 YadA-like membrane anchor domain D1097_00545 PF13018 Extended Signal Peptide of Type V secretion system D1097_00545 PF13018 Extended Signal Peptide of Type V secretion system D1097_00545 PF05658 Head domain of trimeric autotransporter adhesin D1097_00545 PF03895 YadA-like membrane anchor domain D1097_00545 PF05662 Coiled stalk of trimeric autotransporter adhesin D1097_00550 PF00860 Permease family D1097_00555 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D1097_00555 PF14850 DNA-binding domain of Proline dehydrogenase D1097_00555 PF01619 Proline dehydrogenase D1097_00555 PF00171 Aldehyde dehydrogenase family D1097_00560 PF00474 Sodium:solute symporter family D1097_00565 PF09339 IclR helix-turn-helix domain D1097_00565 PF01614 Bacterial transcriptional regulator D1097_00570 PF01812 5-formyltetrahydrofolate cyclo-ligase family D1097_00580 PF05164 Cell division protein ZapA D1097_00585 PF03695 Uncharacterised protein family (UPF0149) D1097_00590 PF01208 Uroporphyrinogen decarboxylase (URO-D) D1097_00595 PF04222 Protein of unknown function (DUF416) D1097_00600 PF00216 Bacterial DNA-binding protein D1097_00605 PF00303 Thymidylate synthase D1097_00615 PF06968 Biotin and Thiamin Synthesis associated domain D1097_00615 PF04055 Radical SAM superfamily D1097_00620 PF00313 'Cold-shock' DNA-binding domain D1097_00625 PF04352 ProQ/FINO family D1097_00630 PF17804 Tail specific protease N-terminal domain D1097_00630 PF03572 Peptidase family S41 D1097_00630 PF11818 C-terminal domain of tail specific protease (DUF3340) D1097_00630 PF00595 PDZ domain D1097_00635 PF03734 L,D-transpeptidase catalytic domain D1097_00640 PF05951 Bacterial protein of unknown function (DUF882) D1097_00645 PF00753 Metallo-beta-lactamase superfamily D1097_00660 PF01230 HIT domain D1097_00665 PF00950 ABC 3 transport family D1097_00670 PF00950 ABC 3 transport family D1097_00675 PF01351 Ribonuclease HII D1097_00680 PF03193 RsgA GTPase D1097_00685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_00685 PF03466 LysR substrate binding domain D1097_00690 PF13419 Haloacid dehalogenase-like hydrolase D1097_00695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_00695 PF03466 LysR substrate binding domain D1097_00705 PF00710 Asparaginase, N-terminal D1097_00705 PF17763 Glutaminase/Asparaginase C-terminal domain D1097_00710 PF06418 CTP synthase N-terminus D1097_00710 PF00117 Glutamine amidotransferase class-I D1097_00715 PF10063 Uncharacterized integral membrane protein (DUF2301) D1097_00720 PF00694 Aconitase C-terminal domain D1097_00725 PF00330 Aconitase family (aconitate hydratase) D1097_00730 PF05651 Putative sugar diacid recognition D1097_00730 PF17853 GGDEF-like domain D1097_00730 PF13556 PucR C-terminal helix-turn-helix domain D1097_00735 PF02447 GntP family permease D1097_00740 PF02595 Glycerate kinase family D1097_00745 PF00708 Acylphosphatase D1097_00750 PF11398 Protein of unknown function (DUF2813) D1097_00755 PF03641 Possible lysine decarboxylase D1097_00755 PF11892 Domain of unknown function (DUF3412) D1097_00755 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases D1097_00760 PF01207 Dihydrouridine synthase (Dus) D1097_00770 PF03477 ATP cone domain D1097_00770 PF02867 Ribonucleotide reductase, barrel domain D1097_00770 PF00317 Ribonucleotide reductase, all-alpha domain D1097_00775 PF01106 NifU-like domain D1097_00775 PF01521 Iron-sulphur cluster biosynthesis D1097_00780 PF11973 NQRA C-terminal domain D1097_00780 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) D1097_00785 PF03116 NQR2, RnfD, RnfE family D1097_00790 PF04205 FMN-binding domain D1097_00795 PF02508 Rnf-Nqr subunit, membrane protein D1097_00800 PF02508 Rnf-Nqr subunit, membrane protein D1097_00805 PF00970 Oxidoreductase FAD-binding domain D1097_00805 PF00111 2Fe-2S iron-sulfur cluster binding domain D1097_00805 PF00175 Oxidoreductase NAD-binding domain D1097_00810 PF02424 ApbE family D1097_00815 PF04400 (Na+)-NQR maturation NqrM D1097_00825 PF12832 MFS_1 like family D1097_00830 PF03807 NADP oxidoreductase coenzyme F420-dependent D1097_00830 PF14748 Pyrroline-5-carboxylate reductase dimerisation D1097_00835 PF04381 Putative exonuclease, RdgC D1097_00840 PF13419 Haloacid dehalogenase-like hydrolase D1097_00855 PF02508 Rnf-Nqr subunit, membrane protein D1097_00860 PF04060 Putative Fe-S cluster D1097_00865 PF13375 RnfC Barrel sandwich hybrid domain D1097_00865 PF12838 4Fe-4S dicluster domain D1097_00865 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D1097_00870 PF03458 UPF0126 domain D1097_00875 PF03116 NQR2, RnfD, RnfE family D1097_00880 PF04205 FMN-binding domain D1097_00885 PF02508 Rnf-Nqr subunit, membrane protein D1097_00890 PF03279 Bacterial lipid A biosynthesis acyltransferase D1097_00905 PF01258 Prokaryotic dksA/traR C4-type zinc finger D1097_00910 PF01743 Poly A polymerase head domain D1097_00910 PF12626 Polymerase A arginine-rich C-terminus D1097_00910 PF12627 Probable RNA and SrmB- binding site of polymerase A D1097_00915 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D1097_00925 PF11739 Dicarboxylate transport D1097_00935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1097_00940 PF00929 Exonuclease D1097_00950 PF02153 Prephenate dehydrogenase D1097_00950 PF01817 Chorismate mutase type II D1097_00955 PF00793 DAHP synthetase I family D1097_00960 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1097_00965 PF00224 Pyruvate kinase, barrel domain D1097_00965 PF02887 Pyruvate kinase, alpha/beta domain D1097_00970 PF00300 Histidine phosphatase superfamily (branch 1) D1097_00975 PF01207 Dihydrouridine synthase (Dus) D1097_00980 PF02954 Bacterial regulatory protein, Fis family D1097_00985 PF00209 Sodium:neurotransmitter symporter family D1097_00990 PF02086 D12 class N6 adenine-specific DNA methyltransferase D1097_00995 PF01761 3-dehydroquinate synthase D1097_01000 PF01202 Shikimate kinase D1097_01005 PF17092 Penicillin-binding protein OB-like domain D1097_01005 PF00912 Transglycosylase D1097_01005 PF00905 Penicillin binding protein transpeptidase domain D1097_01010 PF11104 Type IV pilus assembly protein PilM; D1097_01030 PF03958 Bacterial type II/III secretion system short domain D1097_01030 PF00263 Bacterial type II and III secretion system protein D1097_01035 PF01029 NusB family D1097_01040 PF02769 AIR synthase related protein, C-terminal domain D1097_01040 PF00586 AIR synthase related protein, N-terminal domain D1097_01045 PF04608 Phosphatidylglycerophosphatase A D1097_01050 PF01810 LysE type translocator D1097_01055 PF00588 SpoU rRNA Methylase family D1097_01055 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1097_01060 PF00459 Inositol monophosphatase family D1097_01065 PF02780 Transketolase, C-terminal domain D1097_01065 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D1097_01065 PF02779 Transketolase, pyrimidine binding domain D1097_01075 PF00464 Serine hydroxymethyltransferase D1097_01080 PF01513 ATP-NAD kinase D1097_01085 PF18019 HD domain D1097_01090 PF01867 CRISPR associated protein Cas1 D1097_01100 PF09615 CRISPR-associated protein (Cas_Csy3) D1097_01105 PF09614 CRISPR-associated protein (Cas_Csy2) D1097_01115 PF02824 TGS domain D1097_01115 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1097_01115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1097_01115 PF03129 Anticodon binding domain D1097_01120 PF03783 Curli production assembly/transport component CsgG D1097_01130 PF05643 Putative bacterial lipoprotein (DUF799) D1097_01135 PF00707 Translation initiation factor IF-3, C-terminal domain D1097_01135 PF05198 Translation initiation factor IF-3, N-terminal domain D1097_01140 PF01632 Ribosomal protein L35 D1097_01145 PF00453 Ribosomal protein L20 D1097_01160 PF00571 CBS domain D1097_01160 PF03471 Transporter associated domain D1097_01160 PF01595 Cyclin M transmembrane N-terminal domain D1097_01165 PF00849 RNA pseudouridylate synthase D1097_01170 PF00300 Histidine phosphatase superfamily (branch 1) D1097_01175 PF03652 Holliday junction resolvase D1097_01180 PF02622 Uncharacterized ACR, COG1678 D1097_01185 PF04452 RNA methyltransferase D1097_01195 PF01722 BolA-like protein D1097_01220 PF02810 SEC-C motif D1097_01220 PF07516 SecA Wing and Scaffold domain D1097_01220 PF07517 SecA DEAD-like domain D1097_01220 PF01043 SecA preprotein cross-linking domain D1097_01230 PF00293 NUDIX domain D1097_01235 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1097_01240 PF00696 Amino acid kinase family D1097_01245 PF00202 Aminotransferase class-III D1097_01260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1097_01260 PF07498 Rho termination factor, N-terminal domain D1097_01260 PF07497 Rho termination factor, RNA-binding domain D1097_01265 PF00291 Pyridoxal-phosphate dependent enzyme D1097_01270 PF08544 GHMP kinases C terminal D1097_01270 PF00288 GHMP kinases N terminal domain D1097_01275 PF01842 ACT domain D1097_01275 PF00696 Amino acid kinase family D1097_01275 PF13840 ACT domain D1097_01275 PF00742 Homoserine dehydrogenase D1097_01275 PF03447 Homoserine dehydrogenase, NAD binding domain D1097_01280 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D1097_01280 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D1097_01285 PF01168 Alanine racemase, N-terminal domain D1097_01285 PF00842 Alanine racemase, C-terminal domain D1097_01290 PF13538 UvrD-like helicase C-terminal domain D1097_01325 PF01546 Peptidase family M20/M25/M40 D1097_01325 PF07687 Peptidase dimerisation domain D1097_01330 PF00156 Phosphoribosyl transferase domain D1097_01335 PF00625 Guanylate kinase D1097_01340 PF02321 Outer membrane efflux protein D1097_01345 PF03658 RnfH family Ubiquitin D1097_01350 PF03364 Polyketide cyclase / dehydrase and lipid transport D1097_01355 PF00005 ABC transporter D1097_01355 PF03459 TOBE domain D1097_01360 PF00528 Binding-protein-dependent transport system inner membrane component D1097_01370 PF01061 ABC-2 type transporter D1097_01375 PF00005 ABC transporter D1097_01380 PF12169 DNA polymerase III subunits gamma and tau domain III D1097_01380 PF12170 DNA polymerase III tau subunit V interacting with alpha D1097_01385 PF00156 Phosphoribosyl transferase domain D1097_01400 PF00291 Pyridoxal-phosphate dependent enzyme D1097_01405 PF04073 Aminoacyl-tRNA editing domain D1097_01410 PF00005 ABC transporter D1097_01415 PF01297 Zinc-uptake complex component A periplasmic D1097_01420 PF04358 DsrC like protein D1097_01425 PF01027 Inhibitor of apoptosis-promoting Bax1 D1097_01430 PF01066 CDP-alcohol phosphatidyltransferase D1097_01440 PF01541 GIY-YIG catalytic domain D1097_01440 PF02151 UvrB/uvrC motif D1097_01440 PF08459 UvrC Helix-hairpin-helix N-terminal D1097_01445 PF01026 TatD related DNase D1097_01450 PF00580 UvrD/REP helicase N-terminal domain D1097_01450 PF13361 UvrD-like helicase C-terminal domain D1097_01455 PF00005 ABC transporter D1097_01455 PF08402 TOBE domain D1097_01460 PF00528 Binding-protein-dependent transport system inner membrane component D1097_01465 PF00528 Binding-protein-dependent transport system inner membrane component D1097_01470 PF07499 RuvA, C-terminal domain D1097_01470 PF01330 RuvA N terminal domain D1097_01475 PF05496 Holliday junction DNA helicase RuvB P-loop domain D1097_01475 PF05491 RuvB C-terminal winged helix domain D1097_01475 PF17864 RuvB AAA lid domain D1097_01485 PF03989 DNA gyrase C-terminal domain, beta-propeller D1097_01485 PF00521 DNA gyrase/topoisomerase IV, subunit A D1097_01490 PF12161 HsdM N-terminal domain D1097_01490 PF02384 N-6 DNA Methylase D1097_01505 PF01420 Type I restriction modification DNA specificity domain D1097_01515 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D1097_01515 PF12008 Type I restriction and modification enzyme - subunit R C terminal D1097_01515 PF18766 SWI2/SNF2 ATPase D1097_01520 PF00005 ABC transporter D1097_01520 PF16326 ABC transporter C-terminal domain D1097_01520 PF12848 ABC transporter D1097_01525 PF00899 ThiF family D1097_01530 PF17274 Family of unknown function (DUF5339) D1097_01535 PF01654 Cytochrome bd terminal oxidase subunit I D1097_01540 PF02322 Cytochrome bd terminal oxidase subunit II D1097_01555 PF03061 Thioesterase superfamily D1097_01560 PF01618 MotA/TolQ/ExbB proton channel family D1097_01565 PF02472 Biopolymer transport protein ExbD/TolR D1097_01570 PF06519 TolA C-terminal D1097_01570 PF06519 TolA C-terminal D1097_01575 PF04052 TolB amino-terminal domain D1097_01575 PF07676 WD40-like Beta Propeller Repeat D1097_01580 PF00691 OmpA family D1097_01590 PF00226 DnaJ domain D1097_01590 PF05099 Tellurite resistance protein TerB D1097_01595 PF01207 Dihydrouridine synthase (Dus) D1097_01600 PF05128 Domain of unknown function (DUF697) D1097_01605 PF00005 ABC transporter D1097_01605 PF12848 ABC transporter D1097_01615 PF00994 Probable molybdopterin binding domain D1097_01615 PF03454 MoeA C-terminal region (domain IV) D1097_01615 PF03453 MoeA N-terminal region (domain I and II) D1097_01620 PF00899 ThiF family D1097_01630 PF01938 TRAM domain D1097_01630 PF05958 tRNA (Uracil-5-)-methyltransferase D1097_01635 PF13286 Phosphohydrolase-associated domain D1097_01635 PF01966 HD domain D1097_01640 PF18339 RapA N-terminal Tudor like domain 1 D1097_01640 PF18337 RapA N-terminal Tudor like domain D1097_01640 PF00176 SNF2 family N-terminal domain D1097_01640 PF00271 Helicase conserved C-terminal domain D1097_01640 PF12137 RNA polymerase recycling family C-terminal D1097_01645 PF00849 RNA pseudouridylate synthase D1097_01650 PF01510 N-acetylmuramoyl-L-alanine amidase D1097_01655 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D1097_01660 PF00156 Phosphoribosyl transferase domain D1097_01665 PF01717 Cobalamin-independent synthase, Catalytic domain D1097_01670 PF01053 Cys/Met metabolism PLP-dependent enzyme D1097_01675 PF02600 Disulfide bond formation protein DsbB D1097_01680 PF06450 Bacterial Na+/H+ antiporter B (NhaB) D1097_01685 PF00392 Bacterial regulatory proteins, gntR family D1097_01685 PF07840 FadR C-terminal domain D1097_01690 PF02562 PhoH-like protein D1097_01710 PF00293 NUDIX domain D1097_01715 PF01494 FAD binding domain D1097_01735 PF01494 FAD binding domain D1097_01740 PF03668 P-loop ATPase protein family D1097_01745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1097_01750 PF00005 ABC transporter D1097_01750 PF12399 Branched-chain amino acid ATP-binding cassette transporter D1097_01755 PF03968 OstA-like protein D1097_01765 PF00311 Phosphoenolpyruvate carboxylase D1097_01770 PF04536 TPM domain D1097_01780 PF04011 LemA family D1097_01785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D1097_01790 PF00294 pfkB family carbohydrate kinase D1097_01795 PF00381 PTS HPr component phosphorylation site D1097_01795 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1097_01800 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D1097_01800 PF02806 Alpha amylase, C-terminal all-beta domain D1097_01800 PF00128 Alpha amylase, catalytic domain D1097_01805 PF00128 Alpha amylase, catalytic domain D1097_01805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D1097_01805 PF18390 Glycogen debranching enzyme C-terminal domain D1097_01810 PF00483 Nucleotidyl transferase D1097_01815 PF08323 Starch synthase catalytic domain D1097_01815 PF00534 Glycosyl transferases group 1 D1097_01820 PF00343 Carbohydrate phosphorylase D1097_01825 PF00334 Nucleoside diphosphate kinase D1097_01830 PF08264 Anticodon-binding domain of tRNA D1097_01830 PF09334 tRNA synthetases class I (M) D1097_01830 PF01588 Putative tRNA binding domain D1097_01835 PF13378 Enolase C-terminal domain-like D1097_01845 PF01479 S4 domain D1097_01845 PF00849 RNA pseudouridylate synthase D1097_01850 PF07690 Major Facilitator Superfamily D1097_01865 PF01261 Xylose isomerase-like TIM barrel D1097_01870 PF00877 NlpC/P60 family D1097_01875 PF00717 Peptidase S24-like D1097_01880 PF01228 Glycine radical D1097_01885 PF03167 Uracil DNA glycosylase superfamily D1097_01890 PF04393 Protein of unknown function (DUF535) D1097_01895 PF03797 Autotransporter beta-domain D1097_01895 PF00082 Subtilase family D1097_01900 PF04408 Helicase associated domain (HA2) D1097_01900 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D1097_01900 PF11898 Domain of unknown function (DUF3418) D1097_01900 PF00271 Helicase conserved C-terminal domain D1097_01900 PF00270 DEAD/DEAH box helicase D1097_01905 PF04284 Protein of unknown function (DUF441) D1097_01910 PF01025 GrpE D1097_01915 PF13416 Bacterial extracellular solute-binding protein D1097_01920 PF01554 MatE D1097_01925 PF12705 PD-(D/E)XK nuclease superfamily D1097_01925 PF00580 UvrD/REP helicase N-terminal domain D1097_01925 PF13361 UvrD-like helicase C-terminal domain D1097_01930 PF00795 Carbon-nitrogen hydrolase D1097_01935 PF00571 CBS domain D1097_01935 PF03471 Transporter associated domain D1097_01940 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D1097_01945 PF00230 Major intrinsic protein D1097_01950 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1097_01950 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1097_01955 PF00004 ATPase family associated with various cellular activities (AAA) D1097_01955 PF05362 Lon protease (S16) C-terminal proteolytic domain D1097_01955 PF02190 ATP-dependent protease La (LON) substrate-binding domain D1097_01960 PF07690 Major Facilitator Superfamily D1097_01965 PF03009 Glycerophosphoryl diester phosphodiesterase family D1097_01970 PF01266 FAD dependent oxidoreductase D1097_01970 PF04324 BFD-like [2Fe-2S] binding domain D1097_01975 PF00890 FAD binding domain D1097_01980 PF02754 Cysteine-rich domain D1097_01980 PF13183 4Fe-4S dicluster domain D1097_01985 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1097_01985 PF01872 RibD C-terminal domain D1097_01990 PF00677 Lumazine binding domain D1097_01995 PF00925 GTP cyclohydrolase II D1097_01995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D1097_02000 PF00885 6,7-dimethyl-8-ribityllumazine synthase D1097_02005 PF01272 Transcription elongation factor, GreA/GreB, C-term D1097_02005 PF03449 Transcription elongation factor, N-terminal D1097_02010 PF01380 SIS domain D1097_02010 PF00571 CBS domain D1097_02015 PF12404 Peptidase D1097_02015 PF00883 Cytosol aminopeptidase family, catalytic domain D1097_02020 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) D1097_02025 PF01758 Sodium Bile acid symporter family D1097_02030 PF13533 Biotin-lipoyl like D1097_02040 PF00682 HMGL-like D1097_02040 PF08502 LeuA allosteric (dimerisation) domain D1097_02045 PF04542 Sigma-70 region 2 D1097_02045 PF08281 Sigma-70, region 4 D1097_02050 PF03873 Anti sigma-E protein RseA, C-terminal domain D1097_02050 PF03872 Anti sigma-E protein RseA, N-terminal domain D1097_02060 PF13193 AMP-binding enzyme C-terminal domain D1097_02060 PF00501 AMP-binding enzyme D1097_02070 PF00398 Ribosomal RNA adenine dimethylase D1097_02075 PF09312 SurA N-terminal domain D1097_02075 PF00639 PPIC-type PPIASE domain D1097_02080 PF00156 Phosphoribosyl transferase domain D1097_02085 PF01467 Cytidylyltransferase-like D1097_02085 PF00294 pfkB family carbohydrate kinase D1097_02090 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D1097_02090 PF01926 50S ribosome-binding GTPase D1097_02095 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D1097_02095 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D1097_02095 PF01488 Shikimate / quinate 5-dehydrogenase D1097_02100 PF13291 ACT domain D1097_02100 PF04607 Region found in RelA / SpoT proteins D1097_02100 PF02824 TGS domain D1097_02105 PF13288 DXP reductoisomerase C-terminal domain D1097_02105 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D1097_02105 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D1097_02110 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D1097_02110 PF00132 Bacterial transferase hexapeptide (six repeats) D1097_02115 PF07977 FabA-like domain D1097_02120 PF00132 Bacterial transferase hexapeptide (six repeats) D1097_02120 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D1097_02130 PF01103 Surface antigen D1097_02130 PF07244 Surface antigen variable number repeat D1097_02135 PF02163 Peptidase family M50 D1097_02145 PF01255 Putative undecaprenyl diphosphate synthase D1097_02150 PF16123 Hydroxyacylglutathione hydrolase C-terminus D1097_02150 PF00753 Metallo-beta-lactamase superfamily D1097_02155 PF00480 ROK family D1097_02160 PF01569 PAP2 superfamily D1097_02165 PF01985 CRS1 / YhbY (CRM) domain D1097_02170 PF00535 Glycosyl transferase family 2 D1097_02175 PF00768 D-alanyl-D-alanine carboxypeptidase D1097_02180 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1097_02185 PF00764 Arginosuccinate synthase D1097_02190 PF00075 RNase H D1097_02195 PF02674 Colicin V production protein D1097_02200 PF00156 Phosphoribosyl transferase domain D1097_02210 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D1097_02210 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D1097_02215 PF04355 SmpA / OmlA family D1097_02220 PF04245 37-kD nucleoid-associated bacterial protein D1097_02225 PF01042 Endoribonuclease L-PSP D1097_02230 PF02578 Multi-copper polyphenol oxidoreductase laccase D1097_02240 PF07119 Protein of unknown function (DUF1375) D1097_02245 PF00180 Isocitrate/isopropylmalate dehydrogenase D1097_02250 PF01641 SelR domain D1097_02255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D1097_02255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D1097_02270 PF04085 rod shape-determining protein MreC D1097_02275 PF04093 rod shape-determining protein MreD D1097_02280 PF00004 ATPase family associated with various cellular activities (AAA) D1097_02280 PF12002 MgsA AAA+ ATPase C terminal D1097_02280 PF16193 AAA C-terminal domain D1097_02285 PF00950 ABC 3 transport family D1097_02290 PF13230 Glutamine amidotransferases class-II D1097_02295 PF00561 alpha/beta hydrolase fold D1097_02300 PF02698 DUF218 domain D1097_02305 PF13018 Extended Signal Peptide of Type V secretion system D1097_02305 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin D1097_02305 PF03895 YadA-like membrane anchor domain D1097_02305 PF05662 Coiled stalk of trimeric autotransporter adhesin D1097_02315 PF02589 LUD domain D1097_02320 PF11870 Domain of unknown function (DUF3390) D1097_02320 PF13183 4Fe-4S dicluster domain D1097_02320 PF02589 LUD domain D1097_02325 PF02754 Cysteine-rich domain D1097_02330 PF02652 L-lactate permease D1097_02335 PF00816 H-NS histone family D1097_02340 PF03553 Na+/H+ antiporter family D1097_02345 PF13407 Periplasmic binding protein domain D1097_02355 PF08442 ATP-grasp domain D1097_02355 PF00549 CoA-ligase D1097_02360 PF04393 Protein of unknown function (DUF535) D1097_02365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1097_02365 PF00364 Biotin-requiring enzyme D1097_02365 PF02817 e3 binding domain D1097_02370 PF16078 2-oxoglutarate dehydrogenase N-terminus D1097_02370 PF00676 Dehydrogenase E1 component D1097_02370 PF16870 2-oxoglutarate dehydrogenase C-terminal D1097_02370 PF02779 Transketolase, pyrimidine binding domain D1097_02375 PF00005 ABC transporter D1097_02380 PF01551 Peptidase family M23 D1097_02380 PF04225 Opacity-associated protein A LysM-like domain D1097_02385 PF13098 Thioredoxin-like domain D1097_02385 PF10411 Disulfide bond isomerase protein N-terminus D1097_02390 PF17768 RecJ OB domain D1097_02390 PF01368 DHH family D1097_02390 PF02272 DHHA1 domain D1097_02395 PF00691 OmpA family D1097_02395 PF01389 OmpA-like transmembrane domain D1097_02405 PF00672 HAMP domain D1097_02405 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D1097_02405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1097_02405 PF07730 Histidine kinase D1097_02415 PF01725 Ham1 family D1097_02420 PF01906 Putative heavy-metal-binding D1097_02425 PF01268 Formate--tetrahydrofolate ligase D1097_02430 PF03692 Putative zinc- or iron-chelating domain D1097_02435 PF00106 short chain dehydrogenase D1097_02440 PF00291 Pyridoxal-phosphate dependent enzyme D1097_02445 PF00290 Tryptophan synthase alpha chain D1097_02450 PF12441 CopG antitoxin of type II toxin-antitoxin system D1097_02460 PF01367 5'-3' exonuclease, C-terminal SAM fold D1097_02460 PF00476 DNA polymerase family A D1097_02460 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D1097_02460 PF01612 3'-5' exonuclease D1097_02470 PF03548 Outer membrane lipoprotein carrier protein LolA D1097_02475 PF01371 Trp repressor protein D1097_02480 PF00912 Transglycosylase D1097_02485 PF02627 Carboxymuconolactone decarboxylase family D1097_02515 PF00881 Nitroreductase family D1097_02520 PF08443 RimK-like ATP-grasp domain D1097_02520 PF18030 RimK PreATP-grasp domain D1097_02525 PF02698 DUF218 domain D1097_02530 PF01515 Phosphate acetyl/butaryl transferase D1097_02530 PF03949 Malic enzyme, NAD binding domain D1097_02530 PF00390 Malic enzyme, N-terminal domain D1097_02535 PF01386 Ribosomal L25p family D1097_02545 PF06226 Protein of unknown function (DUF1007) D1097_02550 PF03824 High-affinity nickel-transport protein D1097_02555 PF01235 Sodium:alanine symporter family D1097_02560 PF00005 ABC transporter D1097_02565 PF00005 ABC transporter D1097_02570 PF00528 Binding-protein-dependent transport system inner membrane component D1097_02575 PF00899 ThiF family D1097_02580 PF02597 ThiS family D1097_02590 PF06968 Biotin and Thiamin Synthesis associated domain D1097_02590 PF04055 Radical SAM superfamily D1097_02595 PF03070 TENA/THI-4/PQQC family D1097_02600 PF09084 NMT1/THI5 like D1097_02605 PF08543 Phosphomethylpyrimidine kinase D1097_02610 PF02581 Thiamine monophosphate synthase D1097_02615 PF03144 Elongation factor Tu domain 2 D1097_02615 PF06421 GTP-binding protein LepA C-terminus D1097_02615 PF00009 Elongation factor Tu GTP binding domain D1097_02615 PF00679 Elongation factor G C-terminus D1097_02620 PF10502 Signal peptidase, peptidase S26 D1097_02625 PF00035 Double-stranded RNA binding motif D1097_02625 PF14622 Ribonuclease-III-like D1097_02630 PF07650 KH domain D1097_02630 PF01926 50S ribosome-binding GTPase D1097_02635 PF02565 Recombination protein O C terminal D1097_02635 PF11967 Recombination protein O N terminal D1097_02670 PF00437 Type II/IV secretion system protein D1097_02685 PF03958 Bacterial type II/III secretion system short domain D1097_02685 PF00263 Bacterial type II and III secretion system protein D1097_02710 PF00271 Helicase conserved C-terminal domain D1097_02710 PF00270 DEAD/DEAH box helicase D1097_02720 PF05872 Bacterial protein of unknown function (DUF853) D1097_02730 PF00528 Binding-protein-dependent transport system inner membrane component D1097_02745 PF00318 Ribosomal protein S2 D1097_02750 PF00889 Elongation factor TS D1097_02755 PF00884 Sulfatase D1097_02760 PF00696 Amino acid kinase family D1097_02765 PF01765 Ribosome recycling factor D1097_02770 PF00392 Bacterial regulatory proteins, gntR family D1097_02770 PF00155 Aminotransferase class I and II D1097_02775 PF01680 SOR/SNZ family D1097_02780 PF01174 SNO glutamine amidotransferase family D1097_02785 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1097_02790 PF00270 DEAD/DEAH box helicase D1097_02790 PF00271 Helicase conserved C-terminal domain D1097_02790 PF03880 DbpA RNA binding domain D1097_02800 PF00013 KH domain D1097_02800 PF01138 3' exoribonuclease family, domain 1 D1097_02800 PF03725 3' exoribonuclease family, domain 2 D1097_02800 PF00575 S1 RNA binding domain D1097_02800 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D1097_02805 PF03989 DNA gyrase C-terminal domain, beta-propeller D1097_02805 PF00521 DNA gyrase/topoisomerase IV, subunit A D1097_02815 PF17193 MukF C-terminal domain D1097_02815 PF17192 MukF middle domain D1097_02815 PF03882 MukF winged-helix domain D1097_02820 PF04288 MukE-like family D1097_02825 PF16330 MukB hinge domain D1097_02825 PF04310 MukB N-terminal D1097_02830 PF07690 Major Facilitator Superfamily D1097_02835 PF11893 Domain of unknown function (DUF3413) D1097_02835 PF00884 Sulfatase D1097_02840 PF07208 Protein of unknown function (DUF1414) D1097_02845 PF00440 Bacterial regulatory proteins, tetR family D1097_02850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1097_02855 PF00873 AcrB/AcrD/AcrF family D1097_02860 PF00132 Bacterial transferase hexapeptide (six repeats) D1097_02860 PF12804 MobA-like NTP transferase domain D1097_02870 PF08942 Domain of unknown function (DUF1919) D1097_02875 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1097_02875 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1097_02875 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1097_02875 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1097_02920 PF04381 Putative exonuclease, RdgC D1097_02940 PF03837 RecT family D1097_03005 PF00589 Phage integrase family D1097_03005 PF02899 Phage integrase, N-terminal SAM-like domain D1097_03055 PF05106 Phage holin family (Lysis protein S) D1097_03060 PF00182 Chitinase class I D1097_03075 PF01555 DNA methylase D1097_03075 PF18273 Type III R-M EcoP15I C-terminal domain D1097_03080 PF08774 VRR-NUC domain D1097_03080 PF04851 Type III restriction enzyme, res subunit D1097_03085 PF18381 YcaO cyclodehydratase C-terminal domain D1097_03085 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding D1097_03090 PF00575 S1 RNA binding domain D1097_03090 PF10150 Ribonuclease E/G family D1097_03095 PF01336 OB-fold nucleic acid binding domain D1097_03095 PF00152 tRNA synthetases class II (D, K and N) D1097_03105 PF00348 Polyprenyl synthetase D1097_03110 PF02609 Exonuclease VII small subunit D1097_03115 PF03473 MOSC domain D1097_03115 PF03476 MOSC N-terminal beta barrel domain D1097_03115 PF00111 2Fe-2S iron-sulfur cluster binding domain D1097_03120 PF00884 Sulfatase D1097_03130 PF02542 YgbB family D1097_03135 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D1097_03140 PF04977 Septum formation initiator D1097_03145 PF01293 Phosphoenolpyruvate carboxykinase D1097_03150 PF13580 SIS domain D1097_03155 PF18024 Helix-turn-helix domain D1097_03155 PF00158 Sigma-54 interaction domain D1097_03160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1097_03165 PF00528 Binding-protein-dependent transport system inner membrane component D1097_03170 PF00528 Binding-protein-dependent transport system inner membrane component D1097_03170 PF12911 N-terminal TM domain of oligopeptide transport permease C D1097_03175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1097_03175 PF00005 ABC transporter D1097_03180 PF04237 YjbR D1097_03195 PF03060 Nitronate monooxygenase D1097_03200 PF03466 LysR substrate binding domain D1097_03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_03225 PF00436 Single-strand binding protein family D1097_03230 PF17755 UvrA DNA-binding domain D1097_03230 PF17760 UvrA interaction domain D1097_03240 PF13307 Helicase C-terminal domain D1097_03240 PF06733 DEAD_2 D1097_03250 PF04172 LrgB-like family D1097_03255 PF00005 ABC transporter D1097_03255 PF00664 ABC transporter transmembrane region D1097_03260 PF03550 Outer membrane lipoprotein LolB D1097_03265 PF08544 GHMP kinases C terminal D1097_03265 PF00288 GHMP kinases N terminal domain D1097_03270 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D1097_03270 PF14572 Phosphoribosyl synthetase-associated domain D1097_03275 PF01180 Dihydroorotate dehydrogenase D1097_03280 PF17831 Pyruvate dehydrogenase E1 component middle domain D1097_03280 PF00456 Transketolase, thiamine diphosphate binding domain D1097_03285 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1097_03285 PF02817 e3 binding domain D1097_03285 PF00364 Biotin-requiring enzyme D1097_03290 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1097_03290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1097_03315 PF02872 5'-nucleotidase, C-terminal domain D1097_03315 PF00149 Calcineurin-like phosphoesterase D1097_03320 PF01219 Prokaryotic diacylglycerol kinase D1097_03330 PF00375 Sodium:dicarboxylate symporter family D1097_03335 PF00753 Metallo-beta-lactamase superfamily D1097_03335 PF13567 Domain of unknown function (DUF4131) D1097_03335 PF03772 Competence protein D1097_03340 PF02547 Queuosine biosynthesis protein D1097_03345 PF01933 Uncharacterised protein family UPF0052 D1097_03350 PF01594 AI-2E family transporter D1097_03355 PF13649 Methyltransferase domain D1097_03360 PF03889 Alternative ribosome-rescue factor A D1097_03370 PF00149 Calcineurin-like phosphoesterase D1097_03375 PF04172 LrgB-like family D1097_03380 PF03788 LrgA family D1097_03385 PF08206 Ribonuclease B OB domain D1097_03385 PF00773 RNB domain D1097_03385 PF00575 S1 RNA binding domain D1097_03405 PF13649 Methyltransferase domain D1097_03410 PF00561 alpha/beta hydrolase fold D1097_03415 PF03925 SeqA protein C-terminal domain D1097_03415 PF17206 SeqA protein N-terminal domain D1097_03420 PF00501 AMP-binding enzyme D1097_03425 PF12795 Mechanosensitive ion channel porin domain D1097_03425 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1097_03425 PF00924 Mechanosensitive ion channel D1097_03430 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1097_03430 PF12795 Mechanosensitive ion channel porin domain D1097_03430 PF00924 Mechanosensitive ion channel D1097_03435 PF01264 Chorismate synthase D1097_03440 PF03411 Penicillin-insensitive murein endopeptidase D1097_03445 PF00245 Alkaline phosphatase D1097_03450 PF01131 DNA topoisomerase D1097_03450 PF01751 Toprim domain D1097_03455 PF03840 Preprotein translocase SecG subunit D1097_03465 PF13180 PDZ domain D1097_03470 PF02224 Cytidylate kinase D1097_03475 PF00575 S1 RNA binding domain D1097_03480 PF00216 Bacterial DNA-binding protein D1097_03485 PF06305 Lipopolysaccharide assembly protein A domain D1097_03490 PF18073 Rubredoxin metal binding domain D1097_03495 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1097_03500 PF01253 Translation initiation factor SUI1 D1097_03510 PF04474 Protein of unknown function (DUF554) D1097_03515 PF02441 Flavoprotein D1097_03520 PF04247 Invasion gene expression up-regulator, SirB D1097_03525 PF04751 Protein of unknown function (DUF615) D1097_03530 PF01523 Putative modulator of DNA gyrase D1097_03535 PF10369 Small subunit of acetolactate synthase D1097_03540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1097_03540 PF00205 Thiamine pyrophosphate enzyme, central domain D1097_03540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1097_03545 PF00484 Carbonic anhydrase D1097_03550 PF00313 'Cold-shock' DNA-binding domain D1097_03560 PF01702 Queuine tRNA-ribosyltransferase D1097_03565 PF01814 Hemerythrin HHE cation binding domain D1097_03575 PF08239 Bacterial SH3 domain D1097_03580 PF01384 Phosphate transporter family D1097_03585 PF01865 Protein of unknown function DUF47 D1097_03590 PF00005 ABC transporter D1097_03595 PF01032 FecCD transport family D1097_03600 PF01032 FecCD transport family D1097_03605 PF01497 Periplasmic binding protein D1097_03610 PF00772 DnaB-like helicase N terminal domain D1097_03610 PF03796 DnaB-like helicase C terminal domain D1097_03615 PF05166 YcgL domain D1097_03620 PF03477 ATP cone domain D1097_03625 PF00696 Amino acid kinase family D1097_03625 PF01842 ACT domain D1097_03630 PF04363 Protein of unknown function (DUF496) D1097_03635 PF02541 Ppx/GppA phosphatase family D1097_03640 PF04074 YhcH/YjgK/YiaL D1097_03645 PF01380 SIS domain D1097_03645 PF01418 Helix-turn-helix domain, rpiR family D1097_03650 PF01555 DNA methylase D1097_03660 PF00176 SNF2 family N-terminal domain D1097_03660 PF00271 Helicase conserved C-terminal domain D1097_03665 PF00266 Aminotransferase class-V D1097_03670 PF01053 Cys/Met metabolism PLP-dependent enzyme D1097_03675 PF00155 Aminotransferase class I and II D1097_03680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1097_03685 PF00696 Amino acid kinase family D1097_03685 PF00583 Acetyltransferase (GNAT) family D1097_03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_03690 PF03466 LysR substrate binding domain D1097_03695 PF08272 Topoisomerase I zinc-ribbon-like D1097_03695 PF01131 DNA topoisomerase D1097_03695 PF01751 Toprim domain D1097_03695 PF01396 Topoisomerase DNA binding C4 zinc finger D1097_03700 PF13718 GNAT acetyltransferase 2 D1097_03700 PF17176 tRNA-binding domain D1097_03700 PF05127 Helicase D1097_03705 PF02130 Uncharacterized protein family UPF0054 D1097_03710 PF02391 MoaE protein D1097_03715 PF02597 ThiS family D1097_03720 PF01967 MoaC family D1097_03725 PF04055 Radical SAM superfamily D1097_03725 PF06463 Molybdenum Cofactor Synthesis C D1097_03730 PF03264 NapC/NirT cytochrome c family, N-terminal region D1097_03735 PF01568 Molydopterin dinucleotide binding domain D1097_03735 PF18364 Molybdopterin oxidoreductase N-terminal domain D1097_03735 PF00384 Molybdopterin oxidoreductase D1097_03740 PF09330 D-lactate dehydrogenase, membrane binding D1097_03740 PF01565 FAD binding domain D1097_03745 PF04241 Protein of unknown function (DUF423) D1097_03750 PF01728 FtsJ-like methyltransferase D1097_03750 PF18125 RlmM ferredoxin-like domain D1097_03755 PF05173 Dihydrodipicolinate reductase, C-terminus D1097_03755 PF01113 Dihydrodipicolinate reductase, N-terminus D1097_03760 PF01053 Cys/Met metabolism PLP-dependent enzyme D1097_03765 PF00156 Phosphoribosyl transferase domain D1097_03770 PF01464 Transglycosylase SLT domain D1097_03770 PF14718 Soluble lytic murein transglycosylase L domain D1097_03775 PF07690 Major Facilitator Superfamily D1097_03780 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D1097_03780 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1097_03785 PF09285 Elongation factor P, C-terminal D1097_03785 PF08207 Elongation factor P (EF-P) KOW-like domain D1097_03785 PF01132 Elongation factor P (EF-P) OB domain D1097_03795 PF04055 Radical SAM superfamily D1097_03800 PF01336 OB-fold nucleic acid binding domain D1097_03800 PF00152 tRNA synthetases class II (D, K and N) D1097_03805 PF00654 Voltage gated chloride channel D1097_03810 PF08411 Exonuclease C-terminal D1097_03810 PF00929 Exonuclease D1097_03820 PF02811 PHP domain D1097_03830 PF10518 TAT (twin-arginine translocation) pathway signal sequence D1097_03830 PF04261 Dyp-type peroxidase family D1097_03835 PF09375 Imelysin D1097_03845 PF04851 Type III restriction enzyme, res subunit D1097_03845 PF00271 Helicase conserved C-terminal domain D1097_03845 PF12344 Ultra-violet resistance protein B D1097_03845 PF02151 UvrB/uvrC motif D1097_03845 PF17757 UvrB interaction domain D1097_03855 PF01850 PIN domain D1097_03860 PF13173 AAA domain D1097_03860 PF13635 Domain of unknown function (DUF4143) D1097_03875 PF01555 DNA methylase D1097_03875 PF18273 Type III R-M EcoP15I C-terminal domain D1097_03885 PF00557 Metallopeptidase family M24 D1097_03885 PF05195 Aminopeptidase P, N-terminal domain D1097_03890 PF00155 Aminotransferase class I and II D1097_03895 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D1097_03895 PF02222 ATP-grasp domain D1097_03900 PF17763 Glutaminase/Asparaginase C-terminal domain D1097_03900 PF00710 Asparaginase, N-terminal D1097_03905 PF00731 AIR carboxylase D1097_03910 PF00043 Glutathione S-transferase, C-terminal domain D1097_03910 PF02798 Glutathione S-transferase, N-terminal domain D1097_03915 PF04386 Stringent starvation protein B D1097_03920 PF00027 Cyclic nucleotide-binding domain D1097_03920 PF00325 Bacterial regulatory proteins, crp family D1097_03925 PF00582 Universal stress protein family D1097_03930 PF02272 DHHA1 domain D1097_03930 PF01411 tRNA synthetases class II (A) D1097_03930 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1097_03935 PF02599 Global regulator protein family D1097_03940 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1097_03940 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1097_03940 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1097_03940 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1097_03945 PF00483 Nucleotidyl transferase D1097_03955 PF13609 Gram-negative porin D1097_03965 PF00149 Calcineurin-like phosphoesterase D1097_03965 PF02872 5'-nucleotidase, C-terminal domain D1097_03970 PF00871 Acetokinase family D1097_03975 PF01515 Phosphate acetyl/butaryl transferase D1097_03975 PF07085 DRTGG domain D1097_03980 PF07411 Domain of unknown function (DUF1508) D1097_03985 PF13406 Transglycosylase SLT domain D1097_03990 PF16198 tRNA pseudouridylate synthase B C-terminal domain D1097_03990 PF09157 Pseudouridine synthase II TruB, C-terminal D1097_03990 PF01509 TruB family pseudouridylate synthase (N terminal domain) D1097_03995 PF02033 Ribosome-binding factor A D1097_04000 PF00009 Elongation factor Tu GTP binding domain D1097_04000 PF11987 Translation-initiation factor 2 D1097_04000 PF04760 Translation initiation factor IF-2, N-terminal region D1097_04005 PF13184 NusA-like KH domain D1097_04005 PF00575 S1 RNA binding domain D1097_04005 PF08529 NusA N-terminal domain D1097_04010 PF17384 RimP C-terminal SH3 domain D1097_04010 PF02576 RimP N-terminal domain D1097_04020 PF08245 Mur ligase middle domain D1097_04025 PF17848 Acetyl-coA carboxylase zinc finger domain D1097_04025 PF01039 Carboxyl transferase domain D1097_04030 PF03819 MazG nucleotide pyrophosphohydrolase domain D1097_04035 PF00072 Response regulator receiver domain D1097_04035 PF00486 Transcriptional regulatory protein, C terminal D1097_04040 PF00672 HAMP domain D1097_04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1097_04040 PF00512 His Kinase A (phospho-acceptor) domain D1097_04040 PF16527 Two-component sensor protein CpxA, periplasmic domain D1097_04045 PF00005 ABC transporter D1097_04045 PF02687 FtsX-like permease family D1097_04045 PF12704 MacB-like periplasmic core domain D1097_04050 PF01784 NIF3 (NGG1p interacting factor 3) D1097_04055 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D1097_04060 PF06005 Cell division protein ZapB D1097_04065 PF00265 Thymidine kinase D1097_04070 PF00814 Glycoprotease family D1097_04075 PF00793 DAHP synthetase I family D1097_04080 PF04228 Putative neutral zinc metallopeptidase D1097_04085 PF01580 FtsK/SpoIIIE family D1097_04085 PF09397 Ftsk gamma domain D1097_04085 PF17854 FtsK alpha domain D1097_04085 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D1097_04090 PF01037 Lrp/AsnC ligand binding domain D1097_04095 PF01612 3'-5' exonuclease D1097_04095 PF00570 HRDC domain D1097_04100 PF00480 ROK family D1097_04100 PF01047 MarR family D1097_04115 PF00877 NlpC/P60 family D1097_04120 PF00216 Bacterial DNA-binding protein D1097_04125 PF03483 B3/4 domain D1097_04125 PF03484 tRNA synthetase B5 domain D1097_04125 PF03147 Ferredoxin-fold anticodon binding domain D1097_04125 PF01588 Putative tRNA binding domain D1097_04125 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D1097_04130 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D1097_04130 PF01409 tRNA synthetases class II core domain (F) D1097_04135 PF00881 Nitroreductase family D1097_04140 PF00375 Sodium:dicarboxylate symporter family D1097_04145 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) D1097_04150 PF16916 Dimerisation domain of Zinc Transporter D1097_04150 PF01545 Cation efflux family D1097_04160 PF03883 Peroxide stress protein YaaA D1097_04165 PF00380 Ribosomal protein S9/S16 D1097_04170 PF00572 Ribosomal protein L13 D1097_04190 PF08335 GlnD PII-uridylyltransferase D1097_04190 PF01966 HD domain D1097_04195 PF03222 Tryptophan/tyrosine permease family D1097_04200 PF03222 Tryptophan/tyrosine permease family D1097_04205 PF06480 FtsH Extracellular D1097_04205 PF01434 Peptidase family M41 D1097_04205 PF00004 ATPase family associated with various cellular activities (AAA) D1097_04205 PF17862 AAA+ lid domain D1097_04210 PF01728 FtsJ-like methyltransferase D1097_04215 PF00571 CBS domain D1097_04215 PF00478 IMP dehydrogenase / GMP reductase domain D1097_04225 PF00958 GMP synthase C terminal domain D1097_04225 PF02540 NAD synthase D1097_04225 PF00117 Glutamine amidotransferase class-I D1097_04230 PF00589 Phage integrase family D1097_04230 PF13356 Arm DNA-binding domain D1097_04230 PF14659 Phage integrase, N-terminal SAM-like domain D1097_04355 PF17288 Terminase RNAseH like domain D1097_04355 PF04466 Phage terminase large subunit D1097_04360 PF03592 Terminase small subunit D1097_04365 PF18273 Type III R-M EcoP15I C-terminal domain D1097_04365 PF01555 DNA methylase D1097_04375 PF08003 Protein of unknown function (DUF1698) D1097_04385 PF03562 MltA specific insert domain D1097_04385 PF06725 3D domain D1097_04395 PF13742 OB-fold nucleic acid binding domain D1097_04395 PF02601 Exonuclease VII, large subunit D1097_04405 PF00576 HIUase/Transthyretin family D1097_04410 PF00356 Bacterial regulatory proteins, lacI family D1097_04410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D1097_04415 PF09335 SNARE associated Golgi protein D1097_04420 PF01751 Toprim domain D1097_04420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1097_04420 PF18053 DNA gyrase B subunit insert domain D1097_04420 PF00986 DNA gyrase B subunit, carboxyl terminus D1097_04420 PF00204 DNA gyrase B D1097_04425 PF01040 UbiA prenyltransferase family D1097_04430 PF08220 DeoR-like helix-turn-helix domain D1097_04430 PF00455 DeoR C terminal sensor domain D1097_04435 PF00206 Lyase D1097_04435 PF08328 Adenylosuccinate lyase C-terminal D1097_04440 PF04356 Protein of unknown function (DUF489) D1097_04445 PF00664 ABC transporter transmembrane region D1097_04445 PF00005 ABC transporter D1097_04450 PF00005 ABC transporter D1097_04450 PF00664 ABC transporter transmembrane region D1097_04455 PF04357 TamB, inner membrane protein subunit of TAM complex D1097_04460 PF17243 POTRA domain TamA domain 1 D1097_04460 PF01103 Surface antigen D1097_04465 PF04748 Divergent polysaccharide deacetylase D1097_04470 PF01551 Peptidase family M23 D1097_04475 PF00300 Histidine phosphatase superfamily (branch 1) D1097_04480 PF01810 LysE type translocator D1097_04485 PF00485 Phosphoribulokinase / Uridine kinase family D1097_04490 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) D1097_04495 PF00440 Bacterial regulatory proteins, tetR family D1097_04495 PF14278 Transcriptional regulator C-terminal region D1097_04500 PF13533 Biotin-lipoyl like D1097_04505 PF00005 ABC transporter D1097_04515 PF02321 Outer membrane efflux protein D1097_04520 PF02233 NAD(P) transhydrogenase beta subunit D1097_04525 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D1097_04525 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D1097_04525 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D1097_04530 PF00588 SpoU rRNA Methylase family D1097_04545 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D1097_04545 PF14489 QueF-like protein D1097_04555 PF00578 AhpC/TSA family D1097_04565 PF04055 Radical SAM superfamily D1097_04565 PF06969 HemN C-terminal domain D1097_04570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1097_04575 PF00528 Binding-protein-dependent transport system inner membrane component D1097_04580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1097_04580 PF00005 ABC transporter D1097_04585 PF00005 ABC transporter D1097_04585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1097_04590 PF00890 FAD binding domain D1097_04595 PF01717 Cobalamin-independent synthase, Catalytic domain D1097_04600 PF02219 Methylenetetrahydrofolate reductase D1097_04605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1097_04610 PF03222 Tryptophan/tyrosine permease family D1097_04615 PF03315 Serine dehydratase beta chain D1097_04615 PF03313 Serine dehydratase alpha chain D1097_04620 PF01266 FAD dependent oxidoreductase D1097_04620 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D1097_04625 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D1097_04625 PF00218 Indole-3-glycerol phosphate synthase D1097_04630 PF12728 Helix-turn-helix domain D1097_04630 PF02661 Fic/DOC family D1097_04635 PF04287 tRNA pseudouridine synthase C D1097_04640 PF00849 RNA pseudouridylate synthase D1097_04645 PF03701 Uncharacterised protein family (UPF0181) D1097_04655 PF01928 CYTH domain D1097_04660 PF04317 YcjX-like family, DUF463 D1097_04665 PF01668 SmpB protein D1097_04670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1097_04670 PF02403 Seryl-tRNA synthetase N-terminal domain D1097_04675 PF01546 Peptidase family M20/M25/M40 D1097_04675 PF07687 Peptidase dimerisation domain D1097_04680 PF03606 C4-dicarboxylate anaerobic carrier D1097_04685 PF03575 Peptidase family S51 D1097_04690 PF08264 Anticodon-binding domain of tRNA D1097_04690 PF13603 Leucyl-tRNA synthetase, Domain 2 D1097_04690 PF00133 tRNA synthetases class I (I, L, M and V) D1097_04695 PF04390 Lipopolysaccharide-assembly D1097_04700 PF06144 DNA polymerase III, delta subunit D1097_04700 PF14840 Processivity clamp loader gamma complex DNA pol III C-term D1097_04705 PF03884 DNA gyrase inhibitor YacG D1097_04710 PF01121 Dephospho-CoA kinase D1097_04720 PF00482 Type II secretion system (T2SS), protein F D1097_04725 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D1097_04725 PF00437 Type II/IV secretion system protein D1097_04730 PF07963 Prokaryotic N-terminal methylation motif D1097_04735 PF18073 Rubredoxin metal binding domain D1097_04745 PF00186 Dihydrofolate reductase D1097_04750 PF01472 PUA domain D1097_04750 PF00696 Amino acid kinase family D1097_04755 PF01925 Sulfite exporter TauE/SafE D1097_04760 PF00633 Helix-hairpin-helix motif D1097_04760 PF00730 HhH-GPD superfamily base excision DNA repair protein D1097_04760 PF10576 Iron-sulfur binding domain of endonuclease III D1097_04765 PF02803 Thiolase, C-terminal domain D1097_04765 PF00108 Thiolase, N-terminal domain D1097_04770 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D1097_04770 PF00378 Enoyl-CoA hydratase/isomerase D1097_04770 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D1097_04795 PF02634 FdhD/NarQ family D1097_04800 PF01568 Molydopterin dinucleotide binding domain D1097_04800 PF00384 Molybdopterin oxidoreductase D1097_04800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1097_04805 PF01568 Molydopterin dinucleotide binding domain D1097_04805 PF00384 Molybdopterin oxidoreductase D1097_04805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1097_04810 PF09163 Formate dehydrogenase N, transmembrane D1097_04810 PF13247 4Fe-4S dicluster domain D1097_04815 PF01292 Prokaryotic cytochrome b561 D1097_04820 PF04216 Protein involved in formate dehydrogenase formation D1097_04835 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D1097_04835 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D1097_04845 PF00701 Dihydrodipicolinate synthetase family D1097_04850 PF03279 Bacterial lipid A biosynthesis acyltransferase D1097_04855 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D1097_04860 PF01416 tRNA pseudouridine synthase D1097_04865 PF01227 GTP cyclohydrolase I D1097_04880 PF12464 Maltose acetyltransferase D1097_04880 PF00132 Bacterial transferase hexapeptide (six repeats) D1097_04895 PF03180 NLPA lipoprotein D1097_04900 PF03180 NLPA lipoprotein D1097_04905 PF00528 Binding-protein-dependent transport system inner membrane component D1097_04910 PF09383 NIL domain D1097_04910 PF00005 ABC transporter D1097_04920 PF01406 tRNA synthetases class I (C) catalytic domain D1097_04920 PF09190 DALR domain D1097_04925 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1097_04930 PF12627 Probable RNA and SrmB- binding site of polymerase A D1097_04930 PF01743 Poly A polymerase head domain D1097_04930 PF01966 HD domain D1097_04940 PF00593 TonB dependent receptor D1097_04940 PF07715 TonB-dependent Receptor Plug Domain D1097_04965 PF04384 Iron-sulphur cluster assembly D1097_04970 PF00111 2Fe-2S iron-sulfur cluster binding domain D1097_04975 PF00012 Hsp70 protein D1097_04980 PF10946 Protein of unknown function DUF2625 D1097_04990 PF07743 HSCB C-terminal oligomerisation domain D1097_04995 PF01521 Iron-sulphur cluster biosynthesis D1097_05000 PF01592 NifU-like N terminal domain D1097_05005 PF00266 Aminotransferase class-V D1097_05010 PF02082 Transcriptional regulator D1097_05015 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D1097_05020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D1097_05020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D1097_05025 PF00989 PAS fold D1097_05025 PF18415 Histidine kinase receptor ArcB trans-membrane domain D1097_05025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1097_05025 PF00072 Response regulator receiver domain D1097_05025 PF01627 Hpt domain D1097_05025 PF00512 His Kinase A (phospho-acceptor) domain D1097_05035 PF01713 Smr domain D1097_05045 PF08241 Methyltransferase domain D1097_05050 PF04301 Protein of unknown function (DUF452) D1097_05055 PF00155 Aminotransferase class I and II D1097_05060 PF00202 Aminotransferase class-III D1097_05065 PF05175 Methyltransferase small domain D1097_05070 PF03449 Transcription elongation factor, N-terminal D1097_05070 PF01272 Transcription elongation factor, GreA/GreB, C-term D1097_05075 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D1097_05095 PF02086 D12 class N6 adenine-specific DNA methyltransferase D1097_05100 PF02086 D12 class N6 adenine-specific DNA methyltransferase D1097_05125 PF03412 Peptidase C39 family D1097_05125 PF00005 ABC transporter D1097_05125 PF00664 ABC transporter transmembrane region D1097_05130 PF08339 RTX C-terminal domain D1097_05130 PF02382 N-terminal domain in RTX protein D1097_05130 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1097_05135 PF02794 RTX toxin acyltransferase family D1097_05140 PF05127 Helicase D1097_05140 PF17176 tRNA-binding domain D1097_05140 PF13718 GNAT acetyltransferase 2 D1097_05145 PF01808 AICARFT/IMPCHase bienzyme D1097_05145 PF02142 MGS-like domain D1097_05175 PF04829 Pre-toxin domain with VENN motif D1097_05175 PF13018 Extended Signal Peptide of Type V secretion system D1097_05175 PF13332 Hemagglutinin repeat D1097_05175 PF05860 haemagglutination activity domain D1097_05180 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB D1097_05180 PF17287 POTRA domain D1097_05180 PF08479 POTRA domain, ShlB-type D1097_05185 PF03968 OstA-like protein D1097_05185 PF04453 LPS transport system D D1097_05190 PF04055 Radical SAM superfamily D1097_05190 PF06969 HemN C-terminal domain D1097_05200 PF04220 Der GTPase activator (YihI) D1097_05205 PF06826 Predicted Permease Membrane Region D1097_05205 PF02080 TrkA-C domain D1097_05210 PF03616 Sodium/glutamate symporter D1097_05215 PF06062 Uncharacterised protein family (UPF0231) D1097_05220 PF03710 Glutamate-ammonia ligase adenylyltransferase D1097_05220 PF08335 GlnD PII-uridylyltransferase D1097_05225 PF03795 YCII-related domain D1097_05230 PF03061 Thioesterase superfamily D1097_05235 PF04279 Intracellular septation protein A D1097_05245 PF04217 Protein of unknown function, DUF412 D1097_05250 PF01171 PP-loop family D1097_05255 PF03553 Na+/H+ antiporter family D1097_05255 PF13726 Na+-H+ antiporter family D1097_05260 PF03372 Endonuclease/Exonuclease/phosphatase family D1097_05265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_05265 PF03466 LysR substrate binding domain D1097_05285 PF01197 Ribosomal protein L31 D1097_05290 PF02779 Transketolase, pyrimidine binding domain D1097_05290 PF00456 Transketolase, thiamine diphosphate binding domain D1097_05290 PF02780 Transketolase, C-terminal domain D1097_05295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1097_05295 PF00183 Hsp90 protein D1097_05300 PF06628 Catalase-related immune-responsive D1097_05300 PF00199 Catalase D1097_05310 PF00149 Calcineurin-like phosphoesterase D1097_05315 PF02867 Ribonucleotide reductase, barrel domain D1097_05315 PF03477 ATP cone domain D1097_05315 PF00317 Ribonucleotide reductase, all-alpha domain D1097_05320 PF00268 Ribonucleotide reductase, small chain D1097_05325 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D1097_05325 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D1097_05330 PF10509 Galactokinase galactose-binding signature D1097_05330 PF00288 GHMP kinases N terminal domain D1097_05330 PF08544 GHMP kinases C terminal D1097_05335 PF01263 Aldose 1-epimerase D1097_05340 PF16353 Domain of unknown function(DUF4981) D1097_05340 PF02837 Glycosyl hydrolases family 2, sugar binding domain D1097_05340 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D1097_05340 PF00703 Glycosyl hydrolases family 2 D1097_05340 PF02929 Beta galactosidase small chain D1097_05345 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1097_05345 PF06594 Haemolysin-type calcium binding protein related domain D1097_05355 PF10609 NUBPL iron-transfer P-loop NTPase D1097_05365 PF01914 MarC family integral membrane protein D1097_05370 PF13145 PPIC-type PPIASE domain D1097_05375 PF00999 Sodium/hydrogen exchanger family D1097_05380 PF00312 Ribosomal protein S15 D1097_05385 PF05661 Protein of unknown function (DUF808) D1097_05390 PF07219 HemY protein N-terminus D1097_05395 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D1097_05405 PF03900 Porphobilinogen deaminase, C-terminal domain D1097_05405 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D1097_05410 PF00171 Aldehyde dehydrogenase family D1097_05410 PF00465 Iron-containing alcohol dehydrogenase D1097_05415 PF00118 TCP-1/cpn60 chaperonin family D1097_05420 PF00166 Chaperonin 10 Kd subunit D1097_05425 PF01048 Phosphorylase superfamily D1097_05430 PF01791 DeoC/LacD family aldolase D1097_05435 PF07670 Nucleoside recognition D1097_05435 PF01773 Na+ dependent nucleoside transporter N-terminus D1097_05435 PF07662 Na+ dependent nucleoside transporter C-terminus D1097_05445 PF01081 KDPG and KHG aldolase D1097_05450 PF00294 pfkB family carbohydrate kinase D1097_05455 PF02614 Glucuronate isomerase D1097_05465 PF07729 FCD domain D1097_05465 PF00392 Bacterial regulatory proteins, gntR family D1097_05475 PF01625 Peptide methionine sulfoxide reductase D1097_05475 PF01641 SelR domain D1097_05480 PF00535 Glycosyl transferase family 2 D1097_05485 PF00535 Glycosyl transferase family 2 D1097_05495 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1097_05505 PF04230 Polysaccharide pyruvyl transferase D1097_05510 PF02698 DUF218 domain D1097_05515 PF00271 Helicase conserved C-terminal domain D1097_05515 PF17764 3′ DNA-binding domain (3′BD) D1097_05515 PF18074 Primosomal protein N C-terminal domain D1097_05515 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D1097_05515 PF00270 DEAD/DEAH box helicase D1097_05520 PF01817 Chorismate mutase type II D1097_05520 PF00800 Prephenate dehydratase D1097_05525 PF01432 Peptidase family M3 D1097_05530 PF04055 Radical SAM superfamily D1097_05535 PF02901 Pyruvate formate lyase-like D1097_05535 PF01228 Glycine radical D1097_05540 PF01226 Formate/nitrite transporter D1097_05550 PF01435 Peptidase family M48 D1097_05555 PF00817 impB/mucB/samB family D1097_05555 PF11799 impB/mucB/samB family C-terminal domain D1097_05555 PF11798 IMS family HHH motif D1097_05560 PF03956 Lysine exporter LysO D1097_05565 PF00425 chorismate binding enzyme D1097_05570 PF00155 Aminotransferase class I and II D1097_05575 PF00892 EamA-like transporter family D1097_05580 PF00892 EamA-like transporter family D1097_05585 PF01810 LysE type translocator D1097_05590 PF07715 TonB-dependent Receptor Plug Domain D1097_05590 PF04886 PT repeat D1097_05590 PF00593 TonB dependent receptor D1097_05595 PF01243 Pyridoxamine 5'-phosphate oxidase D1097_05605 PF03918 Cytochrome C biogenesis protein D1097_05610 PF08534 Redoxin D1097_05615 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1097_05615 PF01578 Cytochrome C assembly protein D1097_05620 PF00999 Sodium/hydrogen exchanger family D1097_05620 PF02254 TrkA-N domain D1097_05625 PF12633 Adenylate cyclase NT domain D1097_05625 PF01295 Adenylate cyclase, class-I D1097_05630 PF02801 Beta-ketoacyl synthase, C-terminal domain D1097_05630 PF00109 Beta-ketoacyl synthase, N-terminal domain D1097_05640 PF04076 Bacterial OB fold (BOF) protein D1097_05655 PF00486 Transcriptional regulatory protein, C terminal D1097_05655 PF00072 Response regulator receiver domain D1097_05660 PF00512 His Kinase A (phospho-acceptor) domain D1097_05660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1097_05660 PF08521 Two-component sensor kinase N-terminal D1097_05665 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D1097_05670 PF02699 Preprotein translocase subunit D1097_05675 PF07549 SecD/SecF GG Motif D1097_05675 PF13721 SecD export protein N-terminal TM region D1097_05675 PF02355 Protein export membrane protein D1097_05680 PF07549 SecD/SecF GG Motif D1097_05680 PF02355 Protein export membrane protein D1097_05685 PF00210 Ferritin-like domain D1097_05690 PF00210 Ferritin-like domain D1097_05695 PF00860 Permease family D1097_05700 PF02545 Maf-like protein D1097_05710 PF02926 THUMP domain D1097_05710 PF02568 Thiamine biosynthesis protein (ThiI) D1097_05715 PF00709 Adenylosuccinate synthetase D1097_05720 PF01145 SPFH domain / Band 7 family D1097_05725 PF01145 SPFH domain / Band 7 family D1097_05730 PF00085 Thioredoxin D1097_05735 PF00860 Permease family D1097_05740 PF00438 S-adenosylmethionine synthetase, N-terminal domain D1097_05740 PF02772 S-adenosylmethionine synthetase, central domain D1097_05740 PF02773 S-adenosylmethionine synthetase, C-terminal domain D1097_05750 PF13520 Amino acid permease D1097_05755 PF13520 Amino acid permease D1097_05765 PF01546 Peptidase family M20/M25/M40 D1097_05765 PF07687 Peptidase dimerisation domain D1097_05770 PF03922 OmpW family D1097_05775 PF07724 AAA domain (Cdc48 subfamily) D1097_05775 PF17871 AAA lid domain D1097_05775 PF10431 C-terminal, D2-small domain, of ClpB protein D1097_05775 PF00004 ATPase family associated with various cellular activities (AAA) D1097_05775 PF02861 Clp amino terminal domain, pathogenicity island component D1097_05780 PF01758 Sodium Bile acid symporter family D1097_05785 PF03960 ArsC family D1097_05790 PF10415 Fumarase C C-terminus D1097_05790 PF00206 Lyase D1097_05800 PF00586 AIR synthase related protein, N-terminal domain D1097_05800 PF02769 AIR synthase related protein, C-terminal domain D1097_05805 PF00746 LPXTG cell wall anchor motif D1097_05805 PF07501 G5 domain D1097_05805 PF00728 Glycosyl hydrolase family 20, catalytic domain D1097_05805 PF04650 YSIRK type signal peptide D1097_05810 PF06508 Queuosine biosynthesis protein QueC D1097_05815 PF01242 6-pyruvoyl tetrahydropterin synthase D1097_05820 PF04055 Radical SAM superfamily D1097_05835 PF02789 Cytosol aminopeptidase family, N-terminal domain D1097_05835 PF00883 Cytosol aminopeptidase family, catalytic domain D1097_05845 PF03739 Lipopolysaccharide export system permease LptF/LptG D1097_05850 PF03739 Lipopolysaccharide export system permease LptF/LptG D1097_05855 PF14579 Helix-hairpin-helix motif D1097_05855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D1097_05855 PF07733 Bacterial DNA polymerase III alpha NTPase domain D1097_05855 PF01336 OB-fold nucleic acid binding domain D1097_05855 PF02811 PHP domain D1097_05875 PF02222 ATP-grasp domain D1097_05875 PF01370 NAD dependent epimerase/dehydratase family D1097_05880 PF01553 Acyltransferase D1097_05885 PF00717 Peptidase S24-like D1097_05885 PF01726 LexA DNA binding domain D1097_05890 PF02976 DNA mismatch repair enzyme MutH D1097_05895 PF03741 Integral membrane protein TerC family D1097_05900 PF00933 Glycosyl hydrolase family 3 N terminal domain D1097_05905 PF05958 tRNA (Uracil-5-)-methyltransferase D1097_05910 PF00113 Enolase, C-terminal TIM barrel domain D1097_05910 PF03952 Enolase, N-terminal domain D1097_05915 PF00293 NUDIX domain D1097_05920 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) D1097_05925 PF09382 RQC domain D1097_05925 PF16124 RecQ zinc-binding D1097_05925 PF00570 HRDC domain D1097_05925 PF00271 Helicase conserved C-terminal domain D1097_05925 PF00270 DEAD/DEAH box helicase D1097_05930 PF01491 Frataxin-like domain D1097_05935 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1097_05940 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1097_05945 PF00814 Glycoprotease family D1097_05950 PF13525 Outer membrane lipoprotein D1097_05955 PF01479 S4 domain D1097_05955 PF00849 RNA pseudouridylate synthase D1097_05960 PF14256 YwiC-like protein D1097_05965 PF00365 Phosphofructokinase D1097_05970 PF00266 Aminotransferase class-V D1097_05975 PF00565 Staphylococcal nuclease homologue D1097_05980 PF01235 Sodium:alanine symporter family D1097_05985 PF01594 AI-2E family transporter D1097_05995 PF16325 Peptidase family U32 C-terminal domain D1097_05995 PF01136 Peptidase family U32 D1097_06000 PF04932 O-Antigen ligase D1097_06005 PF00534 Glycosyl transferases group 1 D1097_06005 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D1097_06010 PF01467 Cytidylyltransferase-like D1097_06015 PF00929 Exonuclease D1097_06020 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D1097_06025 PF01476 LysM domain D1097_06025 PF01520 N-acetylmuramoyl-L-alanine amidase D1097_06030 PF00342 Phosphoglucose isomerase D1097_06035 PF04380 Membrane fusogenic activity D1097_06060 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D1097_06060 PF08501 Shikimate dehydrogenase substrate binding domain D1097_06060 PF01488 Shikimate / quinate 5-dehydrogenase D1097_06065 PF01300 Telomere recombination D1097_06070 PF01396 Topoisomerase DNA binding C4 zinc finger D1097_06075 PF04266 ASCH domain D1097_06080 PF02631 RecX family D1097_06085 PF00154 recA bacterial DNA recombination protein D1097_06090 PF01063 Amino-transferase class IV D1097_06095 PF00425 chorismate binding enzyme D1097_06100 PF02646 RmuC family D1097_06105 PF00117 Glutamine amidotransferase class-I D1097_06110 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D1097_06110 PF03625 Domain of unknown function DUF302 D1097_06115 PF02938 GAD domain D1097_06115 PF00152 tRNA synthetases class II (D, K and N) D1097_06115 PF01336 OB-fold nucleic acid binding domain D1097_06120 PF00293 NUDIX domain D1097_06125 PF01709 Transcriptional regulator D1097_06135 PF02075 Crossover junction endodeoxyribonuclease RuvC D1097_06140 PF05193 Peptidase M16 inactive domain D1097_06140 PF00675 Insulinase (Peptidase family M16) D1097_06145 PF01717 Cobalamin-independent synthase, Catalytic domain D1097_06145 PF08267 Cobalamin-independent synthase, N-terminal domain D1097_06150 PF00939 Sodium:sulfate symporter transmembrane region D1097_06155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_06155 PF03466 LysR substrate binding domain D1097_06160 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1097_06170 PF00849 RNA pseudouridylate synthase D1097_06170 PF01479 S4 domain D1097_06175 PF01300 Telomere recombination D1097_06185 PF04261 Dyp-type peroxidase family D1097_06190 PF00425 chorismate binding enzyme D1097_06190 PF04715 Anthranilate synthase component I, N terminal region D1097_06195 PF00117 Glutamine amidotransferase class-I D1097_06200 PF00591 Glycosyl transferase family, a/b domain D1097_06200 PF02885 Glycosyl transferase family, helical bundle domain D1097_06205 PF08241 Methyltransferase domain D1097_06210 PF16036 Chalcone isomerase-like D1097_06215 PF04325 Protein of unknown function (DUF465) D1097_06220 PF01281 Ribosomal protein L9, N-terminal domain D1097_06220 PF03948 Ribosomal protein L9, C-terminal domain D1097_06225 PF01084 Ribosomal protein S18 D1097_06230 PF00436 Single-strand binding protein family D1097_06235 PF01250 Ribosomal protein S6 D1097_06240 PF02844 Phosphoribosylglycinamide synthetase, N domain D1097_06240 PF02843 Phosphoribosylglycinamide synthetase, C domain D1097_06240 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D1097_06245 PF04973 Nicotinamide mononucleotide transporter D1097_06250 PF09976 Tetratricopeptide repeat-like domain D1097_06255 PF13393 Histidyl-tRNA synthetase D1097_06255 PF03129 Anticodon binding domain D1097_06260 PF04551 GcpE protein D1097_06265 PF13464 Domain of unknown function (DUF4115) D1097_06270 PF00916 Sulfate permease family D1097_06270 PF01740 STAS domain D1097_06280 PF00206 Lyase D1097_06280 PF14698 Argininosuccinate lyase C-terminal D1097_06285 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D1097_06285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D1097_06290 PF02254 TrkA-N domain D1097_06290 PF00999 Sodium/hydrogen exchanger family D1097_06305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_06305 PF03466 LysR substrate binding domain D1097_06325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_06325 PF03466 LysR substrate binding domain D1097_06330 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D1097_06335 PF00296 Luciferase-like monooxygenase D1097_06340 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D1097_06340 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D1097_06345 PF00881 Nitroreductase family D1097_06350 PF01914 MarC family integral membrane protein D1097_06360 PF00756 Putative esterase D1097_06365 PF02798 Glutathione S-transferase, N-terminal domain D1097_06380 PF00107 Zinc-binding dehydrogenase D1097_06380 PF08240 Alcohol dehydrogenase GroES-like domain D1097_06385 PF02028 BCCT, betaine/carnitine/choline family transporter D1097_06400 PF03595 Voltage-dependent anion channel D1097_06405 PF13419 Haloacid dehalogenase-like hydrolase D1097_06420 PF00005 ABC transporter D1097_06420 PF00664 ABC transporter transmembrane region D1097_06425 PF02664 S-Ribosylhomocysteinase (LuxS) D1097_06430 PF02470 MlaD protein D1097_06435 PF01475 Ferric uptake regulator family D1097_06440 PF00258 Flavodoxin D1097_06445 PF01402 Ribbon-helix-helix protein, copG family D1097_06450 PF04073 Aminoacyl-tRNA editing domain D1097_06460 PF00860 Permease family D1097_06465 PF02635 DsrE/DsrF-like family D1097_06475 PF01176 Translation initiation factor 1A / IF-1 D1097_06480 PF10144 Bacterial virulence factor haemolysin D1097_06485 PF18429 Domain of unknown function (DUF5609) D1097_06490 PF04461 Protein of unknown function (DUF520) D1097_06500 PF00343 Carbohydrate phosphorylase D1097_06505 PF17874 MalT-like TPR region D1097_06505 PF00196 Bacterial regulatory proteins, luxR family D1097_06510 PF07148 Maltose operon periplasmic protein precursor (MalM) D1097_06520 PF00005 ABC transporter D1097_06520 PF17912 MalK OB fold domain D1097_06525 PF01547 Bacterial extracellular solute-binding protein D1097_06530 PF00528 Binding-protein-dependent transport system inner membrane component D1097_06530 PF14785 Maltose transport system permease protein MalF P2 domain D1097_06535 PF00528 Binding-protein-dependent transport system inner membrane component D1097_06540 PF02446 4-alpha-glucanotransferase D1097_06545 PF02554 Carbon starvation protein CstA D1097_06550 PF01026 TatD related DNase D1097_06555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1097_06555 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1097_06560 PF03350 Uncharacterized protein family, UPF0114 D1097_06565 PF00881 Nitroreductase family D1097_06580 PF00005 ABC transporter D1097_06585 PF01116 Fructose-bisphosphate aldolase class-II D1097_06590 PF00162 Phosphoglycerate kinase D1097_06595 PF00939 Sodium:sulfate symporter transmembrane region D1097_06600 PF00939 Sodium:sulfate symporter transmembrane region D1097_06605 PF00939 Sodium:sulfate symporter transmembrane region D1097_06610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1097_06610 PF01751 Toprim domain D1097_06610 PF00204 DNA gyrase B D1097_06610 PF00986 DNA gyrase B subunit, carboxyl terminus D1097_06615 PF00512 His Kinase A (phospho-acceptor) domain D1097_06615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1097_06620 PF00486 Transcriptional regulatory protein, C terminal D1097_06620 PF00072 Response regulator receiver domain D1097_06625 PF00005 ABC transporter D1097_06635 PF00528 Binding-protein-dependent transport system inner membrane component D1097_06640 PF12849 PBP superfamily domain D1097_06645 PF09278 MerR, DNA binding D1097_06645 PF00376 MerR family regulatory protein D1097_06655 PF00403 Heavy-metal-associated domain D1097_06660 PF00403 Heavy-metal-associated domain D1097_06665 PF00106 short chain dehydrogenase D1097_06670 PF00881 Nitroreductase family D1097_06675 PF01343 Peptidase family S49 D1097_06680 PF00445 Ribonuclease T2 family D1097_06685 PF17283 SprT-like zinc ribbon domain D1097_06685 PF10263 SprT-like family D1097_06690 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1097_06695 PF09371 Tex-like protein N-terminal domain D1097_06695 PF16921 Tex protein YqgF-like domain D1097_06695 PF17674 HHH domain D1097_06695 PF00575 S1 RNA binding domain D1097_06705 PF04055 Radical SAM superfamily D1097_06735 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1097_06745 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D1097_06750 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D1097_06755 PF03966 Trm112p-like protein D1097_06760 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D1097_06770 PF00574 Clp protease D1097_06775 PF02657 Fe-S metabolism associated domain D1097_06790 PF00929 Exonuclease D1097_06795 PF00005 ABC transporter D1097_06795 PF12848 ABC transporter D1097_06800 PF02627 Carboxymuconolactone decarboxylase family D1097_06815 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1097_06820 PF01722 BolA-like protein D1097_06830 PF05494 MlaC protein D1097_06835 PF02470 MlaD protein D1097_06840 PF02405 Permease MlaE D1097_06845 PF00005 ABC transporter D1097_06850 PF00595 PDZ domain D1097_06855 PF08338 Domain of unknown function (DUF1731) D1097_06855 PF01370 NAD dependent epimerase/dehydratase family D1097_06860 PF01316 Arginine repressor, DNA binding domain D1097_06860 PF02863 Arginine repressor, C-terminal domain D1097_06865 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D1097_06865 PF00056 lactate/malate dehydrogenase, NAD binding domain D1097_06880 PF05191 Adenylate kinase, active site lid D1097_06890 PF07690 Major Facilitator Superfamily D1097_06895 PF01370 NAD dependent epimerase/dehydratase family D1097_06900 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D1097_06900 PF03120 NAD-dependent DNA ligase OB-fold domain D1097_06900 PF01653 NAD-dependent DNA ligase adenylation domain D1097_06900 PF00533 BRCA1 C Terminus (BRCT) domain D1097_06900 PF12826 Helix-hairpin-helix motif D1097_06905 PF04354 ZipA, C-terminal FtsZ-binding domain D1097_06920 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D1097_06920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D1097_06930 PF01177 Asp/Glu/Hydantoin racemase D1097_06935 PF07690 Major Facilitator Superfamily D1097_06940 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1097_06945 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D1097_06945 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D1097_06950 PF00459 Inositol monophosphatase family D1097_06955 PF00293 NUDIX domain D1097_06960 PF01479 S4 domain D1097_06965 PF01430 Hsp33 protein D1097_06970 PF03605 Anaerobic c4-dicarboxylate membrane transporter D1097_06980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D1097_06980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D1097_06985 PF00696 Amino acid kinase family D1097_06990 PF00367 phosphotransferase system, EIIB D1097_06990 PF02378 Phosphotransferase system, EIIC D1097_06995 PF00005 ABC transporter D1097_07000 PF00528 Binding-protein-dependent transport system inner membrane component D1097_07005 PF00381 PTS HPr component phosphorylation site D1097_07010 PF05524 PEP-utilising enzyme, N-terminal D1097_07010 PF00391 PEP-utilising enzyme, mobile domain D1097_07010 PF02896 PEP-utilising enzyme, TIM barrel domain D1097_07015 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D1097_07020 PF04055 Radical SAM superfamily D1097_07020 PF01938 TRAM domain D1097_07020 PF00919 Uncharacterized protein family UPF0004 D1097_07025 PF13361 UvrD-like helicase C-terminal domain D1097_07025 PF00580 UvrD/REP helicase N-terminal domain D1097_07030 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1097_07035 PF01924 Hydrogenase formation hypA family D1097_07040 PF00586 AIR synthase related protein, N-terminal domain D1097_07040 PF02769 AIR synthase related protein, C-terminal domain D1097_07045 PF13533 Biotin-lipoyl like D1097_07050 PF03412 Peptidase C39 family D1097_07050 PF00664 ABC transporter transmembrane region D1097_07050 PF00005 ABC transporter D1097_07055 PF08339 RTX C-terminal domain D1097_07055 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1097_07055 PF02382 N-terminal domain in RTX protein D1097_07060 PF02794 RTX toxin acyltransferase family D1097_07065 PF01300 Telomere recombination D1097_07065 PF17788 HypF Kae1-like domain D1097_07065 PF00708 Acylphosphatase D1097_07065 PF07503 HypF finger D1097_07070 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D1097_07070 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D1097_07075 PF13247 4Fe-4S dicluster domain D1097_07080 PF03916 Polysulphide reductase, NrfD D1097_07085 PF00374 Nickel-dependent hydrogenase D1097_07090 PF01750 Hydrogenase maturation protease D1097_07095 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE D1097_07100 PF01455 HupF/HypC family D1097_07105 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D1097_07140 PF17757 UvrB interaction domain D1097_07140 PF03461 TRCF domain D1097_07140 PF00271 Helicase conserved C-terminal domain D1097_07140 PF02559 CarD-like/TRCF domain D1097_07140 PF00270 DEAD/DEAH box helicase D1097_07150 PF02660 Glycerol-3-phosphate acyltransferase D1097_07155 PF02152 Dihydroneopterin aldolase D1097_07160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1097_07160 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region D1097_07165 PF18075 FtsX extracellular domain D1097_07170 PF00005 ABC transporter D1097_07175 PF00448 SRP54-type protein, GTPase domain D1097_07175 PF02881 SRP54-type protein, helical bundle domain D1097_07185 PF04269 Protein of unknown function, DUF440 D1097_07190 PF01613 Flavin reductase like domain D1097_07195 PF03848 Tellurite resistance protein TehB D1097_07195 PF09313 Domain of unknown function (DUF1971) D1097_07200 PF00528 Binding-protein-dependent transport system inner membrane component D1097_07205 PF00528 Binding-protein-dependent transport system inner membrane component D1097_07210 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1097_07215 PF00005 ABC transporter D1097_07220 PF01161 Phosphatidylethanolamine-binding protein D1097_07225 PF01699 Sodium/calcium exchanger protein D1097_07230 PF01381 Helix-turn-helix D1097_07240 PF11412 Disulphide bond corrector protein DsbC D1097_07240 PF02683 Cytochrome C biogenesis protein transmembrane region D1097_07240 PF13098 Thioredoxin-like domain D1097_07245 PF04315 Elongation factor P hydroxylase D1097_07250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D1097_07255 PF04348 LppC putative lipoprotein D1097_07260 PF02021 Uncharacterised protein family UPF0102 D1097_07265 PF13580 SIS domain D1097_07270 PF04972 BON domain D1097_07275 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1097_07275 PF01464 Transglycosylase SLT domain D1097_07295 PF01578 Cytochrome C assembly protein D1097_07295 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1097_07300 PF03100 CcmE D1097_07305 PF04995 Heme exporter protein D (CcmD) D1097_07310 PF01578 Cytochrome C assembly protein D1097_07315 PF03379 CcmB protein D1097_07320 PF00005 ABC transporter D1097_07325 PF00308 Bacterial dnaA protein D1097_07365 PF04277 Oxaloacetate decarboxylase, gamma chain D1097_07370 PF00364 Biotin-requiring enzyme D1097_07370 PF00682 HMGL-like D1097_07370 PF02436 Conserved carboxylase domain D1097_07375 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit D1097_07380 PF08274 PhnA Zinc-Ribbon D1097_07380 PF03831 PhnA domain D1097_07385 PF14376 Haem-binding domain D1097_07385 PF03150 Di-haem cytochrome c peroxidase D1097_07385 PF00034 Cytochrome c D1097_07390 PF02594 Uncharacterised ACR, YggU family COG1872 D1097_07395 PF02325 YGGT family D1097_07400 PF04320 Protein with unknown function (DUF469) D1097_07405 PF02390 Putative methyltransferase D1097_07410 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D1097_07410 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D1097_07415 PF02504 Fatty acid synthesis protein D1097_07420 PF01783 Ribosomal L32p protein family D1097_07425 PF02620 Large ribosomal RNA subunit accumulation protein YceD D1097_07430 PF01578 Cytochrome C assembly protein D1097_07435 PF00571 CBS domain D1097_07435 PF03471 Transporter associated domain D1097_07435 PF01595 Cyclin M transmembrane N-terminal domain D1097_07440 PF00209 Sodium:neurotransmitter symporter family D1097_07450 PF03610 PTS system fructose IIA component D1097_07450 PF03830 PTS system sorbose subfamily IIB component D1097_07455 PF03609 PTS system sorbose-specific iic component D1097_07460 PF03613 PTS system mannose/fructose/sorbose family IID component D1097_07470 PF06173 Protein of unknown function (DUF986) D1097_07475 PF01238 Phosphomannose isomerase type I D1097_07490 PF00664 ABC transporter transmembrane region D1097_07490 PF03412 Peptidase C39 family D1097_07490 PF00005 ABC transporter D1097_07495 PF08339 RTX C-terminal domain D1097_07495 PF02382 N-terminal domain in RTX protein D1097_07495 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1097_07510 PF08402 TOBE domain D1097_07510 PF00005 ABC transporter D1097_07515 PF01225 Mur ligase family, catalytic domain D1097_07515 PF08245 Mur ligase middle domain D1097_07515 PF02875 Mur ligase family, glutamate ligase domain D1097_07520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D1097_07530 PF00009 Elongation factor Tu GTP binding domain D1097_07530 PF03144 Elongation factor Tu domain 2 D1097_07530 PF03143 Elongation factor Tu C-terminal domain D1097_07535 PF00009 Elongation factor Tu GTP binding domain D1097_07535 PF03764 Elongation factor G, domain IV D1097_07535 PF03144 Elongation factor Tu domain 2 D1097_07535 PF14492 Elongation Factor G, domain II D1097_07535 PF00679 Elongation factor G C-terminus D1097_07540 PF00177 Ribosomal protein S7p/S5e D1097_07545 PF00164 Ribosomal protein S12/S23 D1097_07550 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1097_07555 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1097_07565 PF04225 Opacity-associated protein A LysM-like domain D1097_07565 PF08525 Opacity-associated protein A N-terminal motif D1097_07575 PF02666 Phosphatidylserine decarboxylase D1097_07580 PF00271 Helicase conserved C-terminal domain D1097_07580 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D1097_07580 PF04851 Type III restriction enzyme, res subunit D1097_07580 PF08463 EcoEI R protein C-terminal D1097_07585 PF12161 HsdM N-terminal domain D1097_07585 PF02384 N-6 DNA Methylase D1097_07595 PF01420 Type I restriction modification DNA specificity domain D1097_07600 PF00589 Phage integrase family D1097_07600 PF02899 Phage integrase, N-terminal SAM-like domain D1097_07610 PF02655 ATP-grasp domain D1097_07610 PF18419 ATP-grasp-like domain D1097_07610 PF04262 Glutamate-cysteine ligase D1097_07620 PF03222 Tryptophan/tyrosine permease family D1097_07625 PF04175 Protein of unknown function (DUF406) D1097_07630 PF00248 Aldo/keto reductase family D1097_07635 PF00501 AMP-binding enzyme D1097_07640 PF06039 Malate:quinone oxidoreductase (Mqo) D1097_07660 PF02653 Branched-chain amino acid transport system / permease component D1097_07665 PF00005 ABC transporter D1097_07670 PF13407 Periplasmic binding protein domain D1097_07675 PF01389 OmpA-like transmembrane domain D1097_07675 PF00691 OmpA family D1097_07680 PF13183 4Fe-4S dicluster domain D1097_07680 PF01565 FAD binding domain D1097_07680 PF02913 FAD linked oxidases, C-terminal domain D1097_07685 PF03061 Thioesterase superfamily D1097_07690 PF14849 YidC periplasmic domain D1097_07690 PF02096 60Kd inner membrane protein D1097_07695 PF03264 NapC/NirT cytochrome c family, N-terminal region D1097_07700 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D1097_07705 PF12837 4Fe-4S binding domain D1097_07705 PF12801 4Fe-4S binding domain D1097_07710 PF12838 4Fe-4S dicluster domain D1097_07710 PF12800 4Fe-4S binding domain D1097_07715 PF00384 Molybdopterin oxidoreductase D1097_07715 PF01568 Molydopterin dinucleotide binding domain D1097_07715 PF10518 TAT (twin-arginine translocation) pathway signal sequence D1097_07715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1097_07725 PF12838 4Fe-4S dicluster domain D1097_07725 PF13187 4Fe-4S dicluster domain D1097_07730 PF02525 Flavodoxin-like fold D1097_07745 PF12111 Polyribonucleotide phosphorylase C terminal D1097_07745 PF00575 S1 RNA binding domain D1097_07745 PF10150 Ribonuclease E/G family D1097_07755 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family D1097_07760 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D1097_07765 PF01297 Zinc-uptake complex component A periplasmic D1097_07780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1097_07780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1097_07785 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D1097_07790 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1097_07790 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1097_07790 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1097_07790 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1097_07795 PF00585 C-terminal regulatory domain of Threonine dehydratase D1097_07795 PF00291 Pyridoxal-phosphate dependent enzyme D1097_07800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1097_07805 PF00230 Major intrinsic protein D1097_07815 PF18389 TrmO C-terminal domain D1097_07815 PF01980 tRNA-methyltransferase O D1097_07825 PF01040 UbiA prenyltransferase family D1097_07830 PF01521 Iron-sulphur cluster biosynthesis D1097_07840 PF16363 GDP-mannose 4,6 dehydratase D1097_07845 PF00483 Nucleotidyl transferase D1097_07850 PF04321 RmlD substrate binding domain D1097_07855 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D1097_07865 PF00535 Glycosyl transferase family 2 D1097_07870 PF00535 Glycosyl transferase family 2 D1097_07880 PF00535 Glycosyl transferase family 2 D1097_07885 PF02397 Bacterial sugar transferase D1097_07890 PF01165 Ribosomal protein S21 D1097_07895 PF08275 DNA primase catalytic core, N-terminal domain D1097_07895 PF10410 DnaB-helicase binding domain of primase D1097_07895 PF01807 CHC2 zinc finger D1097_07895 PF08278 DNA primase DnaG DnaB-binding D1097_07900 PF04539 Sigma-70 region 3 D1097_07900 PF00140 Sigma-70 factor, region 1.2 D1097_07900 PF04546 Sigma-70, non-essential region D1097_07900 PF04545 Sigma-70, region 4 D1097_07900 PF04542 Sigma-70 region 2 D1097_07900 PF03979 Sigma-70 factor, region 1.1 D1097_07905 PF00579 tRNA synthetases class I (W and Y) D1097_07905 PF01479 S4 domain D1097_07915 PF00575 S1 RNA binding domain D1097_07915 PF00773 RNB domain D1097_07915 PF08206 Ribonuclease B OB domain D1097_07915 PF08461 Ribonuclease R winged-helix domain D1097_07915 PF17876 Cold shock domain D1097_07920 PF00578 AhpC/TSA family D1097_07925 PF00440 Bacterial regulatory proteins, tetR family D1097_07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_07930 PF03466 LysR substrate binding domain D1097_07935 PF08534 Redoxin D1097_07935 PF00462 Glutaredoxin D1097_07955 PF08543 Phosphomethylpyrimidine kinase D1097_07965 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D1097_07970 PF07732 Multicopper oxidase D1097_07970 PF07731 Multicopper oxidase D1097_07975 PF01553 Acyltransferase D1097_07980 PF08534 Redoxin D1097_07985 PF01926 50S ribosome-binding GTPase D1097_07985 PF12631 MnmE helical domain D1097_07985 PF10396 GTP-binding protein TrmE N-terminus D1097_07990 PF05167 Uncharacterised ACR (DUF711) D1097_08000 PF17954 Quercetinase C-terminal cupin domain D1097_08000 PF02678 Pirin D1097_08005 PF00210 Ferritin-like domain D1097_08020 PF12805 FUSC-like inner membrane protein yccS D1097_08025 PF02142 MGS-like domain D1097_08030 PF14821 Threonine synthase N terminus D1097_08030 PF00291 Pyridoxal-phosphate dependent enzyme D1097_08040 PF10458 Valyl tRNA synthetase tRNA binding arm D1097_08040 PF08264 Anticodon-binding domain of tRNA D1097_08040 PF00133 tRNA synthetases class I (I, L, M and V) D1097_08050 PF13673 Acetyltransferase (GNAT) domain D1097_08055 PF04364 DNA polymerase III chi subunit, HolC D1097_08060 PF01476 LysM domain D1097_08065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1097_08065 PF05698 Bacterial trigger factor protein (TF) C-terminus D1097_08065 PF05697 Bacterial trigger factor protein (TF) D1097_08070 PF00581 Rhodanese-like domain D1097_08075 PF02556 Preprotein translocase subunit SecB D1097_08080 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D1097_08080 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D1097_08085 PF00132 Bacterial transferase hexapeptide (six repeats) D1097_08085 PF06426 Serine acetyltransferase, N-terminal D1097_08090 PF03143 Elongation factor Tu C-terminal domain D1097_08090 PF00009 Elongation factor Tu GTP binding domain D1097_08090 PF03144 Elongation factor Tu domain 2 D1097_08115 PF00485 Phosphoribulokinase / Uridine kinase family D1097_08120 PF08534 Redoxin D1097_08125 PF03918 Cytochrome C biogenesis protein D1097_08130 PF03918 Cytochrome C biogenesis protein D1097_08135 PF00994 Probable molybdopterin binding domain D1097_08140 PF00543 Nitrogen regulatory protein P-II D1097_08145 PF01252 Signal peptidase (SPase) II D1097_08150 PF02401 LytB protein D1097_08155 PF03937 Flavinator of succinate dehydrogenase D1097_08165 PF04055 Radical SAM superfamily D1097_08170 PF00043 Glutathione S-transferase, C-terminal domain D1097_08170 PF02798 Glutathione S-transferase, N-terminal domain D1097_08175 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D1097_08175 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D1097_08185 PF02313 Fumarate reductase subunit D D1097_08190 PF02300 Fumarate reductase subunit C D1097_08195 PF13183 4Fe-4S dicluster domain D1097_08195 PF13085 2Fe-2S iron-sulfur cluster binding domain D1097_08200 PF00890 FAD binding domain D1097_08200 PF02910 Fumarate reductase flavoprotein C-term D1097_08205 PF00152 tRNA synthetases class II (D, K and N) D1097_08210 PF01678 Diaminopimelate epimerase D1097_08215 PF03605 Anaerobic c4-dicarboxylate membrane transporter D1097_08220 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D1097_08230 PF03702 Anhydro-N-acetylmuramic acid kinase D1097_08235 PF01380 SIS domain D1097_08255 PF01523 Putative modulator of DNA gyrase D1097_08260 PF09179 TilS substrate binding domain D1097_08260 PF01171 PP-loop family D1097_08260 PF11734 TilS substrate C-terminal domain D1097_08270 PF02899 Phage integrase, N-terminal SAM-like domain D1097_08270 PF00589 Phage integrase family D1097_08325 PF03808 Glycosyl transferase WecB/TagA/CpsF family D1097_08330 PF06899 WzyE protein, O-antigen assembly polymerase D1097_08335 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 D1097_08340 PF03063 Prismane/CO dehydrogenase family D1097_08345 PF00175 Oxidoreductase NAD-binding domain D1097_08345 PF00111 2Fe-2S iron-sulfur cluster binding domain D1097_08345 PF00970 Oxidoreductase FAD-binding domain D1097_08350 PF01943 Polysaccharide biosynthesis protein D1097_08355 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D1097_08365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D1097_08365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D1097_08365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D1097_08370 PF02350 UDP-N-acetylglucosamine 2-epimerase D1097_08380 PF00953 Glycosyl transferase family 4 D1097_08385 PF00202 Aminotransferase class-III D1097_08395 PF03023 Lipid II flippase MurJ D1097_08400 PF01649 Ribosomal protein S20 D1097_08405 PF02080 TrkA-C domain D1097_08405 PF02254 TrkA-N domain D1097_08410 PF01189 16S rRNA methyltransferase RsmB/F D1097_08410 PF01029 NusB family D1097_08415 PF03144 Elongation factor Tu domain 2 D1097_08415 PF00009 Elongation factor Tu GTP binding domain D1097_08415 PF09107 Elongation factor SelB, winged helix D1097_08415 PF09106 Elongation factor SelB, winged helix D1097_08420 PF12390 Selenocysteine synthase N terminal D1097_08420 PF03841 L-seryl-tRNA selenium transferase D1097_08430 PF00258 Flavodoxin D1097_08440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1097_08440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1097_08455 PF07715 TonB-dependent Receptor Plug Domain D1097_08455 PF00593 TonB dependent receptor D1097_08460 PF17484 N-Lobe handle Tf-binding protein B D1097_08460 PF17483 C-lobe handle domain of Tf-binding protein B D1097_08460 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1097_08465 PF02472 Biopolymer transport protein ExbD/TolR D1097_08470 PF01618 MotA/TolQ/ExbB proton channel family D1097_08495 PF06821 Serine hydrolase D1097_08515 PF01501 Glycosyl transferase family 8 D1097_08515 PF08759 Glycosyltransferase GT-D fold D1097_08520 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D1097_08520 PF00535 Glycosyl transferase family 2 D1097_08525 PF17101 Stealth protein CR1, conserved region 1 D1097_08525 PF11380 Stealth protein CR2, conserved region 2 D1097_08530 PF02563 Polysaccharide biosynthesis/export protein D1097_08540 PF01061 ABC-2 type transporter D1097_08545 PF00005 ABC transporter D1097_08550 PF00005 ABC transporter D1097_08555 PF00551 Formyl transferase D1097_08555 PF02911 Formyl transferase, C-terminal domain D1097_08565 PF01205 Uncharacterized protein family UPF0029 D1097_08565 PF09186 Domain of unknown function (DUF1949) D1097_08570 PF02386 Cation transport protein D1097_08575 PF12724 Flavodoxin domain D1097_08580 PF01741 Large-conductance mechanosensitive channel, MscL D1097_08585 PF04055 Radical SAM superfamily D1097_08590 PF03099 Biotin/lipoate A/B protein ligase family D1097_08595 PF04359 Protein of unknown function (DUF493) D1097_08600 PF00768 D-alanyl-D-alanine carboxypeptidase D1097_08600 PF07943 Penicillin-binding protein 5, C-terminal domain D1097_08605 PF03330 Lytic transglycolase D1097_08610 PF01098 Cell cycle protein D1097_08615 PF03717 Penicillin-binding Protein dimerisation domain D1097_08615 PF00905 Penicillin binding protein transpeptidase domain D1097_08620 PF02590 Predicted SPOUT methyltransferase D1097_08630 PF01624 MutS domain I D1097_08630 PF00488 MutS domain V D1097_08630 PF05190 MutS family domain IV D1097_08630 PF05188 MutS domain II D1097_08630 PF05192 MutS domain III D1097_08635 PF00005 ABC transporter D1097_08640 PF00528 Binding-protein-dependent transport system inner membrane component D1097_08700 PF03313 Serine dehydratase alpha chain D1097_08705 PF01814 Hemerythrin HHE cation binding domain D1097_08705 PF04405 Domain of Unknown function (DUF542) D1097_08710 PF00893 Small Multidrug Resistance protein D1097_08715 PF04175 Protein of unknown function (DUF406) D1097_08730 PF01774 UreD urease accessory protein D1097_08735 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1097_08740 PF01730 UreF D1097_08745 PF05194 UreE urease accessory protein, C-terminal domain D1097_08745 PF02814 UreE urease accessory protein, N-terminal domain D1097_08755 PF01979 Amidohydrolase family D1097_08755 PF00449 Urease alpha-subunit, N-terminal domain D1097_08760 PF00699 Urease beta subunit D1097_08765 PF00547 Urease, gamma subunit D1097_08775 PF00005 ABC transporter D1097_08785 PF01891 Cobalt uptake substrate-specific transmembrane region D1097_08795 PF10670 Domain of unknown function (DUF4198) D1097_08800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_08800 PF03466 LysR substrate binding domain D1097_08810 PF02080 TrkA-C domain D1097_08810 PF03600 Citrate transporter D1097_08815 PF05068 Mannitol repressor D1097_08820 PF08125 Mannitol dehydrogenase C-terminal domain D1097_08820 PF01232 Mannitol dehydrogenase Rossmann domain D1097_08825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D1097_08825 PF02378 Phosphotransferase system, EIIC D1097_08825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1097_08830 PF01380 SIS domain D1097_08835 PF00455 DeoR C terminal sensor domain D1097_08835 PF08220 DeoR-like helix-turn-helix domain D1097_08850 PF18254 HMW1 domain 2 D1097_08850 PF18071 HMW1C N-terminal D1097_08855 PF18693 TRAM domain D1097_08855 PF04055 Radical SAM superfamily D1097_08855 PF00919 Uncharacterized protein family UPF0004 D1097_08860 PF01048 Phosphorylase superfamily D1097_08870 PF04102 SlyX D1097_08875 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1097_08875 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D1097_08880 PF13309 HTH domain D1097_08880 PF08348 YheO-like PAS domain D1097_08885 PF02635 DsrE/DsrF-like family D1097_08890 PF02635 DsrE/DsrF-like family D1097_08895 PF04077 DsrH like protein D1097_08925 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D1097_08930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1097_08930 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1097_08935 PF00231 ATP synthase D1097_08940 PF00306 ATP synthase alpha/beta chain, C terminal domain D1097_08940 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1097_08940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1097_08945 PF00213 ATP synthase delta (OSCP) subunit D1097_08950 PF00430 ATP synthase B/B' CF(0) D1097_08955 PF00137 ATP synthase subunit C D1097_08960 PF00119 ATP synthase A chain D1097_08970 PF02527 rRNA small subunit methyltransferase G D1097_08975 PF13932 GidA associated domain D1097_08975 PF01134 Glucose inhibited division protein A D1097_08985 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1097_08990 PF02810 SEC-C motif D1097_09000 PF03613 PTS system mannose/fructose/sorbose family IID component D1097_09005 PF03609 PTS system sorbose-specific iic component D1097_09010 PF03610 PTS system fructose IIA component D1097_09010 PF03830 PTS system sorbose subfamily IIB component D1097_09015 PF02447 GntP family permease D1097_09020 PF01202 Shikimate kinase D1097_09025 PF00356 Bacterial regulatory proteins, lacI family D1097_09025 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D1097_09030 PF00356 Bacterial regulatory proteins, lacI family D1097_09035 PF05025 RbsD / FucU transport protein family D1097_09040 PF00005 ABC transporter D1097_09045 PF02653 Branched-chain amino acid transport system / permease component D1097_09050 PF13407 Periplasmic binding protein domain D1097_09055 PF00294 pfkB family carbohydrate kinase D1097_09060 PF00384 Molybdopterin oxidoreductase D1097_09060 PF01568 Molydopterin dinucleotide binding domain D1097_09060 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1097_09065 PF12800 4Fe-4S binding domain D1097_09065 PF13247 4Fe-4S dicluster domain D1097_09070 PF04976 DMSO reductase anchor subunit (DmsC) D1097_09075 PF02613 Nitrate reductase delta subunit D1097_09080 PF00037 4Fe-4S binding domain D1097_09080 PF12838 4Fe-4S dicluster domain D1097_09110 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D1097_09110 PF02769 AIR synthase related protein, C-terminal domain D1097_09110 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D1097_09115 PF00455 DeoR C terminal sensor domain D1097_09115 PF08220 DeoR-like helix-turn-helix domain D1097_09125 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1097_09125 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1097_09130 PF05025 RbsD / FucU transport protein family D1097_09135 PF00596 Class II Aldolase and Adducin N-terminal domain D1097_09140 PF07690 Major Facilitator Superfamily D1097_09145 PF00465 Iron-containing alcohol dehydrogenase D1097_09150 PF07274 Protein of unknown function (DUF1440) D1097_09155 PF00528 Binding-protein-dependent transport system inner membrane component D1097_09160 PF00528 Binding-protein-dependent transport system inner membrane component D1097_09165 PF00005 ABC transporter D1097_09170 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1097_09175 PF05159 Capsule polysaccharide biosynthesis protein D1097_09180 PF05159 Capsule polysaccharide biosynthesis protein D1097_09190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1097_09195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1097_09200 PF03611 PTS system sugar-specific permease component D1097_09210 PF00455 DeoR C terminal sensor domain D1097_09210 PF08220 DeoR-like helix-turn-helix domain D1097_09215 PF01261 Xylose isomerase-like TIM barrel D1097_09220 PF00596 Class II Aldolase and Adducin N-terminal domain D1097_09225 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D1097_09225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1097_09250 PF04575 Protein of unknown function (DUF560) D1097_09255 PF01370 NAD dependent epimerase/dehydratase family D1097_09260 PF01327 Polypeptide deformylase D1097_09265 PF02481 DNA recombination-mediator protein A D1097_09265 PF17782 DprA winged helix domain D1097_09270 PF03169 OPT oligopeptide transporter protein D1097_09275 PF03611 PTS system sugar-specific permease component D1097_09285 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D1097_09290 PF00467 KOW motif D1097_09290 PF02357 Transcription termination factor nusG D1097_09295 PF03946 Ribosomal protein L11, N-terminal domain D1097_09295 PF00298 Ribosomal protein L11, RNA binding domain D1097_09300 PF00687 Ribosomal protein L1p/L10e family D1097_09305 PF00466 Ribosomal protein L10 D1097_09310 PF00542 Ribosomal protein L7/L12 C-terminal domain D1097_09310 PF16320 Ribosomal protein L7/L12 dimerisation domain D1097_09345 PF04563 RNA polymerase beta subunit D1097_09345 PF10385 RNA polymerase beta subunit external 1 domain D1097_09345 PF04561 RNA polymerase Rpb2, domain 2 D1097_09345 PF04565 RNA polymerase Rpb2, domain 3 D1097_09345 PF00562 RNA polymerase Rpb2, domain 6 D1097_09345 PF04560 RNA polymerase Rpb2, domain 7 D1097_09350 PF04983 RNA polymerase Rpb1, domain 3 D1097_09350 PF05000 RNA polymerase Rpb1, domain 4 D1097_09350 PF04998 RNA polymerase Rpb1, domain 5 D1097_09350 PF04997 RNA polymerase Rpb1, domain 1 D1097_09350 PF00623 RNA polymerase Rpb1, domain 2 D1097_09390 PF00004 ATPase family associated with various cellular activities (AAA) D1097_09390 PF07724 AAA domain (Cdc48 subfamily) D1097_09390 PF10431 C-terminal, D2-small domain, of ClpB protein D1097_09395 PF00227 Proteasome subunit D1097_09400 PF03749 Sugar fermentation stimulation protein RE domain D1097_09400 PF17746 SfsA N-terminal OB domain D1097_09405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1097_09410 PF00730 HhH-GPD superfamily base excision DNA repair protein D1097_09410 PF14815 NUDIX domain D1097_09415 PF04362 Bacterial Fe(2+) trafficking D1097_09420 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D1097_09420 PF01464 Transglycosylase SLT domain D1097_09445 PF02978 Signal peptide binding domain D1097_09445 PF00448 SRP54-type protein, GTPase domain D1097_09445 PF02881 SRP54-type protein, helical bundle domain D1097_09455 PF01494 FAD binding domain D1097_09460 PF01381 Helix-turn-helix D1097_09465 PF01078 Magnesium chelatase, subunit ChlI D1097_09465 PF13335 Magnesium chelatase, subunit ChlI C-terminal D1097_09475 PF00561 alpha/beta hydrolase fold D1097_09480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1097_09480 PF16582 Middle domain of thiamine pyrophosphate D1097_09480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1097_09485 PF02348 Cytidylyltransferase D1097_09485 PF13472 GDSL-like Lipase/Acylhydrolase family D1097_09490 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase D1097_09495 PF00480 ROK family D1097_09500 PF00701 Dihydrodipicolinate synthetase family D1097_09505 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1097_09510 PF01979 Amidohydrolase family D1097_09515 PF10415 Fumarase C C-terminus D1097_09515 PF00206 Lyase D1097_09525 PF00338 Ribosomal protein S10p/S20e D1097_09530 PF00297 Ribosomal protein L3 D1097_09535 PF00573 Ribosomal protein L4/L1 family D1097_09540 PF00276 Ribosomal protein L23 D1097_09545 PF03947 Ribosomal Proteins L2, C-terminal domain D1097_09545 PF00181 Ribosomal Proteins L2, RNA binding domain D1097_09550 PF00203 Ribosomal protein S19 D1097_09555 PF00237 Ribosomal protein L22p/L17e D1097_09560 PF07650 KH domain D1097_09560 PF00189 Ribosomal protein S3, C-terminal domain D1097_09565 PF00252 Ribosomal protein L16p/L10e D1097_09570 PF00831 Ribosomal L29 protein D1097_09575 PF00366 Ribosomal protein S17 D1097_09580 PF00238 Ribosomal protein L14p/L23e D1097_09585 PF00467 KOW motif D1097_09585 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D1097_09590 PF00281 Ribosomal protein L5 D1097_09590 PF00673 ribosomal L5P family C-terminus D1097_09595 PF00253 Ribosomal protein S14p/S29e D1097_09600 PF00410 Ribosomal protein S8 D1097_09605 PF00347 Ribosomal protein L6 D1097_09610 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D1097_09615 PF03719 Ribosomal protein S5, C-terminal domain D1097_09615 PF00333 Ribosomal protein S5, N-terminal domain D1097_09620 PF00327 Ribosomal protein L30p/L7e D1097_09625 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D1097_09630 PF00344 SecY translocase D1097_09635 PF00444 Ribosomal protein L36 D1097_09640 PF00416 Ribosomal protein S13/S18 D1097_09645 PF00411 Ribosomal protein S11 D1097_09650 PF00163 Ribosomal protein S4/S9 N-terminal domain D1097_09650 PF01479 S4 domain D1097_09655 PF01000 RNA polymerase Rpb3/RpoA insert domain D1097_09655 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D1097_09655 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D1097_09660 PF01196 Ribosomal protein L17 D1097_09665 PF00886 Ribosomal protein S16 D1097_09670 PF01782 RimM N-terminal domain D1097_09670 PF05239 PRC-barrel domain D1097_09675 PF01746 tRNA (Guanine-1)-methyltransferase D1097_09680 PF01245 Ribosomal protein L19 D1097_09685 PF08007 Cupin superfamily protein D1097_09690 PF01497 Periplasmic binding protein D1097_09695 PF01032 FecCD transport family D1097_09700 PF00005 ABC transporter D1097_09705 PF00127 Copper binding proteins, plastocyanin/azurin family D1097_09720 PF02613 Nitrate reductase delta subunit D1097_09725 PF00384 Molybdopterin oxidoreductase D1097_09725 PF18364 Molybdopterin oxidoreductase N-terminal domain D1097_09725 PF01568 Molydopterin dinucleotide binding domain D1097_09735 PF02091 Glycyl-tRNA synthetase alpha subunit D1097_09740 PF04480 Protein of unknown function (DUF559) D1097_09750 PF05746 DALR anticodon binding domain D1097_09750 PF02092 Glycyl-tRNA synthetase beta subunit D1097_09755 PF17347 Family of unknown function (DUF5377) D1097_09760 PF02899 Phage integrase, N-terminal SAM-like domain D1097_09760 PF00589 Phage integrase family D1097_09765 PF04304 Protein of unknown function (DUF454) D1097_09775 PF00149 Calcineurin-like phosphoesterase D1097_09780 PF07509 Protein of unknown function (DUF1523) D1097_09785 PF01026 TatD related DNase D1097_09800 PF00005 ABC transporter D1097_09800 PF02687 FtsX-like permease family D1097_09800 PF12704 MacB-like periplasmic core domain D1097_09805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1097_09810 PF06629 MltA-interacting protein MipA D1097_09815 PF09115 DNA polymerase III, delta subunit, C terminal D1097_09820 PF02223 Thymidylate kinase D1097_09825 PF02618 YceG-like family D1097_09845 PF00550 Phosphopantetheine attachment site D1097_09850 PF00834 Ribulose-phosphate 3 epimerase family D1097_09855 PF01197 Ribosomal protein L31 D1097_09860 PF00444 Ribosomal protein L36 D1097_09865 PF00905 Penicillin binding protein transpeptidase domain D1097_09865 PF14814 Bifunctional transglycosylase second domain D1097_09865 PF00912 Transglycosylase D1097_09870 PF00378 Enoyl-CoA hydratase/isomerase D1097_09875 PF02824 TGS domain D1097_09875 PF04607 Region found in RelA / SpoT proteins D1097_09875 PF13291 ACT domain D1097_09880 PF01192 RNA polymerase Rpb6 D1097_09885 PF00270 DEAD/DEAH box helicase D1097_09885 PF00271 Helicase conserved C-terminal domain D1097_09885 PF17191 RecG wedge domain D1097_09900 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1097_09900 PF03129 Anticodon binding domain D1097_09900 PF04073 Aminoacyl-tRNA editing domain D1097_09910 PF04542 Sigma-70 region 2 D1097_09910 PF08281 Sigma-70, region 4 D1097_09915 PF00174 Oxidoreductase molybdopterin binding domain D1097_09920 PF01794 Ferric reductase like transmembrane component D1097_10025 PF10124 Mu-like prophage major head subunit gpT D1097_10035 PF05069 Phage virion morphogenesis family D1097_10045 PF06074 Protein of unknown function (DUF935) D1097_10110 PF06252 Protein of unknown function (DUF1018) D1097_10145 PF07352 Bacteriophage Mu Gam like protein D1097_10165 PF13401 AAA domain D1097_10165 PF09077 Mu B transposition protein, C terminal D1097_10170 PF02914 Bacteriophage Mu transposase D1097_10170 PF02316 Mu DNA-binding domain D1097_10170 PF09039 Mu DNA binding, I gamma subdomain D1097_10170 PF09299 Mu transposase, C-terminal D1097_10175 PF13693 Winged helix-turn-helix DNA-binding D1097_10180 PF00717 Peptidase S24-like D1097_10180 PF01381 Helix-turn-helix D1097_10185 PF05958 tRNA (Uracil-5-)-methyltransferase D1097_10190 PF04542 Sigma-70 region 2 D1097_10190 PF04545 Sigma-70, region 4 D1097_10190 PF00140 Sigma-70 factor, region 1.2 D1097_10195 PF07690 Major Facilitator Superfamily D1097_10215 PF03590 Aspartate-ammonia ligase D1097_10220 PF13404 AsnC-type helix-turn-helix domain D1097_10220 PF01037 Lrp/AsnC ligand binding domain D1097_10225 PF01048 Phosphorylase superfamily D1097_10230 PF04345 Chorismate lyase D1097_10235 PF01177 Asp/Glu/Hydantoin racemase D1097_10270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D1097_10270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D1097_10275 PF00667 FAD binding domain D1097_10275 PF00258 Flavodoxin D1097_10275 PF00175 Oxidoreductase NAD-binding domain D1097_10280 PF00009 Elongation factor Tu GTP binding domain D1097_10285 PF01507 Phosphoadenosine phosphosulfate reductase family D1097_10290 PF01507 Phosphoadenosine phosphosulfate reductase family D1097_10295 PF14824 Sirohaem biosynthesis protein central D1097_10295 PF10414 Sirohaem synthase dimerisation region D1097_10295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D1097_10305 PF00528 Binding-protein-dependent transport system inner membrane component D1097_10310 PF00528 Binding-protein-dependent transport system inner membrane component D1097_10315 PF00005 ABC transporter D1097_10315 PF17850 CysA C-terminal regulatory domain D1097_10315 PF12857 TOBE-like domain D1097_10320 PF01070 FMN-dependent dehydrogenase D1097_10325 PF08279 HTH domain D1097_10325 PF03099 Biotin/lipoate A/B protein ligase family D1097_10325 PF02237 Biotin protein ligase C terminal domain D1097_10330 PF01565 FAD binding domain D1097_10330 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D1097_10335 PF01389 OmpA-like transmembrane domain D1097_10335 PF00691 OmpA family D1097_10345 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D1097_10345 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D1097_10350 PF04403 Paraquat-inducible protein A D1097_10355 PF01841 Transglutaminase-like superfamily D1097_10365 PF00403 Heavy-metal-associated domain D1097_10370 PF00465 Iron-containing alcohol dehydrogenase D1097_10375 PF03466 LysR substrate binding domain D1097_10375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1097_10380 PF00132 Bacterial transferase hexapeptide (six repeats) D1097_10380 PF14602 Hexapeptide repeat of succinyl-transferase D1097_10380 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D1097_10385 PF01220 Dehydroquinase class II D1097_10390 PF04488 Glycosyltransferase sugar-binding region containing DXD motif D1097_10395 PF00364 Biotin-requiring enzyme D1097_10400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1097_10400 PF02785 Biotin carboxylase C-terminal domain D1097_10400 PF00289 Biotin carboxylase, N-terminal domain D1097_10405 PF12804 MobA-like NTP transferase domain D1097_10410 PF06288 Protein of unknown function (DUF1040) D1097_10415 PF01323 DSBA-like thioredoxin domain D1097_10425 PF05036 Sporulation related domain D1097_10425 PF05036 Sporulation related domain D1097_10430 PF04445 Putative SAM-dependent methyltransferase D1097_10435 PF02557 D-alanyl-D-alanine carboxypeptidase D1097_10440 PF07687 Peptidase dimerisation domain D1097_10440 PF01546 Peptidase family M20/M25/M40 D1097_10445 PF03960 ArsC family D1097_10455 PF00809 Pterin binding enzyme D1097_10460 PF00849 RNA pseudouridylate synthase D1097_10460 PF01479 S4 domain D1097_10470 PF00924 Mechanosensitive ion channel D1097_10470 PF05552 Conserved TM helix D1097_10475 PF02785 Biotin carboxylase C-terminal domain D1097_10475 PF00289 Biotin carboxylase, N-terminal domain D1097_10475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1097_10485 PF00675 Insulinase (Peptidase family M16) D1097_10485 PF05193 Peptidase M16 inactive domain D1097_10485 PF16187 Middle or third domain of peptidase_M16 D1097_10490 PF17946 RecC C-terminal domain D1097_10515 PF07977 FabA-like domain D1097_10520 PF05362 Lon protease (S16) C-terminal proteolytic domain D1097_10520 PF13654 AAA domain D1097_10525 PF17414 MatP C-terminal ribbon-helix-helix domain D1097_10525 PF06303 MatP N-terminal domain D1097_10530 PF00579 tRNA synthetases class I (W and Y) D1097_10535 PF13419 Haloacid dehalogenase-like hydrolase D1097_10545 PF01790 Prolipoprotein diacylglyceryl transferase D1097_10550 PF01925 Sulfite exporter TauE/SafE D1097_10555 PF00293 NUDIX domain D1097_10565 PF00719 Inorganic pyrophosphatase D1097_10570 PF05175 Methyltransferase small domain D1097_10575 PF03737 Aldolase/RraA D1097_10600 PF00684 DnaJ central domain D1097_10600 PF01556 DnaJ C terminal domain D1097_10600 PF00226 DnaJ domain D1097_10605 PF00012 Hsp70 protein D1097_10610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1097_10610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1097_10620 PF13407 Periplasmic binding protein domain D1097_10625 PF00005 ABC transporter D1097_10630 PF02653 Branched-chain amino acid transport system / permease component D1097_10635 PF12833 Helix-turn-helix domain D1097_10640 PF01431 Peptidase family M13 D1097_10640 PF05649 Peptidase family M13 D1097_10645 PF10571 Uncharacterised protein family UPF0547 D1097_10650 PF00474 Sodium:solute symporter family D1097_10655 PF06196 Protein of unknown function (DUF997) D1097_10660 PF01340 Met Apo-repressor, MetJ D1097_10665 PF04333 MlaA lipoprotein D1097_10670 PF01263 Aldose 1-epimerase D1097_10685 PF01522 Polysaccharide deacetylase D1097_10685 PF14883 Hypothetical glycosyl hydrolase family 13 D1097_10690 PF00535 Glycosyl transferase family 2 D1097_10700 PF00121 Triosephosphate isomerase D1097_10705 PF01142 tRNA pseudouridine synthase D (TruD) D1097_10710 PF01975 Survival protein SurE D1097_10715 PF09335 SNARE associated Golgi protein D1097_10730 PF01476 LysM domain D1097_10730 PF01551 Peptidase family M23 D1097_10735 PF03352 Methyladenine glycosylase D1097_10745 PF07670 Nucleoside recognition D1097_10750 PF07670 Nucleoside recognition D1097_10755 PF00762 Ferrochelatase D1097_10760 PF00468 Ribosomal protein L34 D1097_10765 PF00825 Ribonuclease P D1097_10770 PF01809 Putative membrane protein insertion efficiency factor D1097_10775 PF00120 Glutamine synthetase, catalytic domain D1097_10775 PF03951 Glutamine synthetase, beta-Grasp domain D1097_10780 PF00149 Calcineurin-like phosphoesterase D1097_10785 PF00293 NUDIX domain D1097_10790 PF06146 Phosphate-starvation-inducible E D1097_10795 PF01648 4'-phosphopantetheinyl transferase superfamily D1097_10800 PF00892 EamA-like transporter family D1097_10805 PF06965 Na+/H+ antiporter 1 D1097_10815 PF02580 D-Tyr-tRNA(Tyr) deacylase D1097_10820 PF03631 Virulence factor BrkB D1097_10825 PF00171 Aldehyde dehydrogenase family D1097_10845 PF01119 DNA mismatch repair protein, C-terminal domain D1097_10845 PF08676 MutL C terminal dimerisation domain D1097_10850 PF08240 Alcohol dehydrogenase GroES-like domain D1097_10850 PF00107 Zinc-binding dehydrogenase D1097_10860 PF17209 Hfq protein D1097_10865 PF16360 GTP-binding GTPase Middle Region D1097_10865 PF13167 GTP-binding GTPase N-terminal D1097_10865 PF01926 50S ribosome-binding GTPase D1097_10870 PF03641 Possible lysine decarboxylase D1097_10875 PF03819 MazG nucleotide pyrophosphohydrolase domain D1097_10880 PF00027 Cyclic nucleotide-binding domain D1097_10880 PF13545 Crp-like helix-turn-helix domain D1097_10885 PF06794 Uncharacterised protein family (UPF0270) D1097_10890 PF00440 Bacterial regulatory proteins, tetR family D1097_10895 PF00692 dUTPase D1097_10900 PF04127 DNA / pantothenate metabolism flavoprotein D1097_10900 PF02441 Flavoprotein D1097_10905 PF04002 RadC-like JAB domain D1097_10910 PF00830 Ribosomal L28 family D1097_10915 PF00471 Ribosomal protein L33 D1097_10930 PF00202 Aminotransferase class-III D1097_10935 PF00282 Pyridoxal-dependent decarboxylase conserved domain D1097_10940 PF01206 Sulfurtransferase TusA D1097_10945 PF04143 Sulphur transport D1097_10950 PF04219 Protein of unknown function, DUF D1097_10955 PF05958 tRNA (Uracil-5-)-methyltransferase D1097_10970 PF01544 CorA-like Mg2+ transporter protein D1097_10975 PF01209 ubiE/COQ5 methyltransferase family D1097_10985 PF03109 ABC1 family D1097_10990 PF02416 mttA/Hcf106 family D1097_11000 PF00902 Sec-independent protein translocase protein (TatC) D1097_11005 PF00490 Delta-aminolevulinic acid dehydratase D1097_11015 PF06827 Zinc finger found in FPG and IleRS D1097_11015 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D1097_11015 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D1097_11020 PF05525 Branched-chain amino acid transport protein D1097_11030 PF00698 Acyl transferase domain D1097_11035 PF02677 Epoxyqueuosine reductase QueH D1097_11040 PF00348 Polyprenyl synthetase D1097_11050 PF03358 NADPH-dependent FMN reductase D1097_11055 PF07681 DoxX D1097_11060 PF00829 Ribosomal prokaryotic L21 protein D1097_11065 PF01016 Ribosomal L27 protein D1097_11070 PF00892 EamA-like transporter family D1097_11085 PF04575 Protein of unknown function (DUF560) D1097_11090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1097_11095 PF00156 Phosphoribosyl transferase domain D1097_11100 PF08468 Methyltransferase small domain N-terminal D1097_11100 PF05175 Methyltransferase small domain D1097_11110 PF00583 Acetyltransferase (GNAT) family D1097_11115 PF00271 Helicase conserved C-terminal domain D1097_11115 PF00270 DEAD/DEAH box helicase D1097_11120 PF01243 Pyridoxamine 5'-phosphate oxidase D1097_11120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D1097_11125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1097_11130 PF00171 Aldehyde dehydrogenase family D1097_11135 PF01184 GPR1/FUN34/yaaH family D1097_11140 PF00005 ABC transporter D1097_11150 PF01032 FecCD transport family D1097_11155 PF07715 TonB-dependent Receptor Plug Domain D1097_11155 PF00593 TonB dependent receptor D1097_11165 PF01259 SAICAR synthetase D1097_11170 PF01634 ATP phosphoribosyltransferase D1097_11170 PF08029 HisG, C-terminal domain D1097_11175 PF00815 Histidinol dehydrogenase D1097_11180 PF00155 Aminotransferase class I and II D1097_11190 PF00475 Imidazoleglycerol-phosphate dehydratase D1097_11200 PF17761 DUF1016 N-terminal domain D1097_11200 PF06250 YhcG PDDEXK nuclease domain D1097_11205 PF00117 Glutamine amidotransferase class-I D1097_11210 PF00977 Histidine biosynthesis protein D1097_11215 PF00977 Histidine biosynthesis protein D1097_11225 PF01502 Phosphoribosyl-AMP cyclohydrolase D1097_11225 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D1097_11230 PF02592 Putative vitamin uptake transporter D1097_11235 PF00557 Metallopeptidase family M24 D1097_11245 PF00356 Bacterial regulatory proteins, lacI family D1097_11245 PF13407 Periplasmic binding protein domain D1097_11250 PF08244 Glycosyl hydrolases family 32 C terminal D1097_11250 PF00251 Glycosyl hydrolases family 32 N-terminal domain D1097_11255 PF00294 pfkB family carbohydrate kinase D1097_11260 PF07732 Multicopper oxidase D1097_11265 PF02687 FtsX-like permease family D1097_11265 PF12704 MacB-like periplasmic core domain D1097_11270 PF00005 ABC transporter D1097_11275 PF12704 MacB-like periplasmic core domain D1097_11275 PF02687 FtsX-like permease family D1097_11280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1097_11280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1097_11285 PF00793 DAHP synthetase I family D1097_11290 PF13369 Transglutaminase-like superfamily D1097_11295 PF13847 Methyltransferase domain D1097_11295 PF17827 PrmC N-terminal domain D1097_11305 PF03462 PCRF domain D1097_11305 PF00472 RF-1 domain D1097_11310 PF00581 Rhodanese-like domain D1097_11315 PF04143 Sulphur transport