locus-tag class description APL_0001 PF11638 DnaA N-terminal domain APL_0001 PF00308 Bacterial dnaA protein APL_0001 PF08299 Bacterial dnaA protein helix-turn-helix APL_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain APL_0002 PF02767 DNA polymerase III beta subunit, central domain APL_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain APL_0003 PF02463 RecF/RecN/SMC N terminal domain APL_0004 PF00080 Copper/zinc superoxide dismutase (SODC) APL_0005 PF02774 Semialdehyde dehydrogenase, dimerisation domain APL_0005 PF01118 Semialdehyde dehydrogenase, NAD binding domain APL_0007 PF02684 Lipid-A-disaccharide synthetase APL_0008 PF08496 Peptidase family S49 N-terminal APL_0008 PF01343 Peptidase family S49 APL_0009 PF02381 MraZ protein, putative antitoxin-like APL_0010 PF01795 MraW methylase family APL_0011 PF04999 Cell division protein FtsL APL_0012 PF00905 Penicillin binding protein transpeptidase domain APL_0012 PF03717 Penicillin-binding Protein dimerisation domain APL_0013 PF08245 Mur ligase middle domain APL_0013 PF01225 Mur ligase family, catalytic domain APL_0013 PF02875 Mur ligase family, glutamate ligase domain APL_0014 PF08245 Mur ligase middle domain APL_0014 PF02875 Mur ligase family, glutamate ligase domain APL_0014 PF01225 Mur ligase family, catalytic domain APL_0015 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APL_0015 PF00953 Glycosyl transferase family 4 APL_0016 PF02875 Mur ligase family, glutamate ligase domain APL_0016 PF08245 Mur ligase middle domain APL_0017 PF01098 Cell cycle protein APL_0018 PF03033 Glycosyltransferase family 28 N-terminal domain APL_0018 PF04101 Glycosyltransferase family 28 C-terminal domain APL_0019 PF08245 Mur ligase middle domain APL_0019 PF02875 Mur ligase family, glutamate ligase domain APL_0019 PF01225 Mur ligase family, catalytic domain APL_0020 PF07478 D-ala D-ala ligase C-terminus APL_0020 PF01820 D-ala D-ala ligase N-terminus APL_0021 PF08478 POTRA domain, FtsQ-type APL_0021 PF03799 Cell division protein FtsQ APL_0022 PF02491 SHS2 domain inserted in FTSA APL_0023 PF12327 FtsZ family, C-terminal domain APL_0023 PF00091 Tubulin/FtsZ family, GTPase domain APL_0024 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APL_0025 PF02463 RecF/RecN/SMC N terminal domain APL_0026 PF00005 ABC transporter APL_0026 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APL_0027 PF00528 Binding-protein-dependent transport system inner membrane component APL_0027 PF12911 N-terminal TM domain of oligopeptide transport permease C APL_0028 PF00528 Binding-protein-dependent transport system inner membrane component APL_0029 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APL_0030 PF03144 Elongation factor Tu domain 2 APL_0030 PF00009 Elongation factor Tu GTP binding domain APL_0030 PF16658 Class II release factor RF3, C-terminal domain APL_0033 PF01195 Peptidyl-tRNA hydrolase APL_0034 PF06071 Protein of unknown function (DUF933) APL_0034 PF01926 50S ribosome-binding GTPase APL_0037 PF05433 Glycine zipper 2TM domain APL_0038 PF06185 YecM protein APL_0039 PF03485 Arginyl tRNA synthetase N terminal domain APL_0039 PF05746 DALR anticodon binding domain APL_0039 PF00750 tRNA synthetases class I (R) APL_0040 PF01926 50S ribosome-binding GTPase APL_0040 PF01018 GTP1/OBG APL_0041 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) APL_0042 PF08032 RNA 2'-O ribose methyltransferase substrate binding APL_0042 PF00588 SpoU rRNA Methylase family APL_0043 PF13091 PLD-like domain APL_0044 PF00133 tRNA synthetases class I (I, L, M and V) APL_0044 PF06827 Zinc finger found in FPG and IleRS APL_0044 PF08264 Anticodon-binding domain of tRNA APL_0045 PF06574 FAD synthetase APL_0045 PF01687 Riboflavin kinase APL_0046 PF01467 Cytidylyltransferase-like APL_0046 PF13521 AAA domain APL_0047 PF00149 Calcineurin-like phosphoesterase APL_0048 PF00072 Response regulator receiver domain APL_0048 PF00486 Transcriptional regulatory protein, C terminal APL_0052 PF01168 Alanine racemase, N-terminal domain APL_0054 PF00462 Glutaredoxin APL_0055 PF01138 3' exoribonuclease family, domain 1 APL_0055 PF03725 3' exoribonuclease family, domain 2 APL_0056 PF08340 Domain of unknown function (DUF1732) APL_0056 PF03755 YicC-like family, N-terminal region APL_0057 PF01571 Aminomethyltransferase folate-binding domain APL_0058 PF00037 4Fe-4S binding domain APL_0059 PF00072 Response regulator receiver domain APL_0059 PF00196 Bacterial regulatory proteins, luxR family APL_0060 PF02926 THUMP domain APL_0060 PF10672 S-adenosylmethionine-dependent methyltransferase APL_0060 PF01170 Putative RNA methylase family UPF0020 APL_0061 PF00588 SpoU rRNA Methylase family APL_0062 PF00923 Transaldolase/Fructose-6-phosphate aldolase APL_0063 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APL_0064 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APL_0065 PF00528 Binding-protein-dependent transport system inner membrane component APL_0066 PF00528 Binding-protein-dependent transport system inner membrane component APL_0066 PF12911 N-terminal TM domain of oligopeptide transport permease C APL_0067 PF00005 ABC transporter APL_0067 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APL_0068 PF00005 ABC transporter APL_0068 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APL_0069 PF06146 Phosphate-starvation-inducible E APL_0071 PF01042 Endoribonuclease L-PSP APL_0072 PF01063 Amino-transferase class IV APL_0073 PF00462 Glutaredoxin APL_0074 PF13662 Toprim domain APL_0074 PF02132 RecR protein APL_0075 PF02575 YbaB/EbfC DNA-binding family APL_0076 PF03544 Gram-negative bacterial TonB protein C-terminal APL_0077 PF02472 Biopolymer transport protein ExbD/TolR APL_0078 PF01618 MotA/TolQ/ExbB proton channel family APL_0079 PF00581 Rhodanese-like domain APL_0081 PF05524 PEP-utilising enzyme, N-terminal APL_0081 PF00381 PTS HPr component phosphorylation site APL_0081 PF00391 PEP-utilising enzyme, mobile domain APL_0081 PF03610 PTS system fructose IIA component APL_0082 PF02734 DAK2 domain APL_0083 PF02733 Dak1 domain APL_0084 PF07992 Pyridine nucleotide-disulphide oxidoreductase APL_0085 PF02348 Cytidylyltransferase APL_0086 PF06078 Bacterial protein of unknown function (DUF937) APL_0087 PF09297 NADH pyrophosphatase zinc ribbon domain APL_0087 PF00293 NUDIX domain APL_0088 PF00849 RNA pseudouridylate synthase APL_0090 PF04186 FxsA cytoplasmic membrane protein APL_0091 PF00557 Metallopeptidase family M24 APL_0092 PF01206 Sulfurtransferase TusA APL_0093 PF06877 Regulator of ribonuclease activity B APL_0094 PF01926 50S ribosome-binding GTPase APL_0096 PF02535 ZIP Zinc transporter APL_0097 PF00920 Dehydratase family APL_0099 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APL_0099 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APL_0099 PF00205 Thiamine pyrophosphate enzyme, central domain APL_0100 PF02335 Cytochrome c552 APL_0102 PF13247 4Fe-4S dicluster domain APL_0103 PF03916 Polysulphide reductase, NrfD APL_0104 PF13018 Extended Signal Peptide of Type V secretion system APL_0104 PF05662 Coiled stalk of trimeric autotransporter adhesin APL_0104 PF05658 Head domain of trimeric autotransporter adhesin APL_0104 PF03895 YadA-like membrane anchor domain APL_0104 PF05658 Head domain of trimeric autotransporter adhesin APL_0104 PF05662 Coiled stalk of trimeric autotransporter adhesin APL_0104 PF03895 YadA-like membrane anchor domain APL_0104 PF13018 Extended Signal Peptide of Type V secretion system APL_0104 PF13018 Extended Signal Peptide of Type V secretion system APL_0104 PF03895 YadA-like membrane anchor domain APL_0104 PF05658 Head domain of trimeric autotransporter adhesin APL_0104 PF05662 Coiled stalk of trimeric autotransporter adhesin APL_0104 PF05662 Coiled stalk of trimeric autotransporter adhesin APL_0104 PF13018 Extended Signal Peptide of Type V secretion system APL_0104 PF05658 Head domain of trimeric autotransporter adhesin APL_0104 PF03895 YadA-like membrane anchor domain APL_0105 PF00860 Permease family APL_0106 PF01619 Proline dehydrogenase APL_0106 PF14850 DNA-binding domain of Proline dehydrogenase APL_0106 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APL_0106 PF00171 Aldehyde dehydrogenase family APL_0107 PF00474 Sodium:solute symporter family APL_0108 PF09339 IclR helix-turn-helix domain APL_0108 PF01614 Bacterial transcriptional regulator APL_0109 PF01812 5-formyltetrahydrofolate cyclo-ligase family APL_0110 PF05164 Cell division protein ZapA APL_0111 PF03695 Uncharacterised protein family (UPF0149) APL_0112 PF01208 Uroporphyrinogen decarboxylase (URO-D) APL_0113 PF04222 Protein of unknown function (DUF416) APL_0114 PF00216 Bacterial DNA-binding protein APL_0115 PF00303 Thymidylate synthase APL_0117 PF06968 Biotin and Thiamin Synthesis associated domain APL_0117 PF04055 Radical SAM superfamily APL_0118 PF00313 'Cold-shock' DNA-binding domain APL_0119 PF04352 ProQ/FINO family APL_0120 PF17804 Tail specific protease N-terminal domain APL_0120 PF03572 Peptidase family S41 APL_0120 PF00595 PDZ domain APL_0120 PF11818 C-terminal domain of tail specific protease (DUF3340) APL_0121 PF03734 L,D-transpeptidase catalytic domain APL_0122 PF05951 Bacterial protein of unknown function (DUF882) APL_0123 PF00753 Metallo-beta-lactamase superfamily APL_0126 PF01230 HIT domain APL_0127 PF00950 ABC 3 transport family APL_0128 PF00950 ABC 3 transport family APL_0129 PF01351 Ribonuclease HII APL_0130 PF03193 RsgA GTPase APL_0131 PF03466 LysR substrate binding domain APL_0131 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_0132 PF13419 Haloacid dehalogenase-like hydrolase APL_0133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_0133 PF03466 LysR substrate binding domain APL_0135 PF00710 Asparaginase, N-terminal APL_0135 PF17763 Glutaminase/Asparaginase C-terminal domain APL_0136 PF06418 CTP synthase N-terminus APL_0136 PF00117 Glutamine amidotransferase class-I APL_0137 PF10063 Uncharacterized integral membrane protein (DUF2301) APL_0138 PF00694 Aconitase C-terminal domain APL_0139 PF00330 Aconitase family (aconitate hydratase) APL_0140 PF13556 PucR C-terminal helix-turn-helix domain APL_0140 PF17853 GGDEF-like domain APL_0140 PF05651 Putative sugar diacid recognition APL_0141 PF02447 GntP family permease APL_0142 PF02595 Glycerate kinase family APL_0143 PF00708 Acylphosphatase APL_0144 PF11398 Protein of unknown function (DUF2813) APL_0145 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases APL_0145 PF03641 Possible lysine decarboxylase APL_0145 PF11892 Domain of unknown function (DUF3412) APL_0146 PF01207 Dihydrouridine synthase (Dus) APL_0148 PF00317 Ribonucleotide reductase, all-alpha domain APL_0148 PF02867 Ribonucleotide reductase, barrel domain APL_0148 PF03477 ATP cone domain APL_0149 PF01106 NifU-like domain APL_0149 PF01521 Iron-sulphur cluster biosynthesis APL_0150 PF11973 NQRA C-terminal domain APL_0150 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) APL_0151 PF03116 NQR2, RnfD, RnfE family APL_0152 PF04205 FMN-binding domain APL_0153 PF02508 Rnf-Nqr subunit, membrane protein APL_0154 PF02508 Rnf-Nqr subunit, membrane protein APL_0155 PF00175 Oxidoreductase NAD-binding domain APL_0155 PF00111 2Fe-2S iron-sulfur cluster binding domain APL_0155 PF00970 Oxidoreductase FAD-binding domain APL_0156 PF02424 ApbE family APL_0157 PF04400 (Na+)-NQR maturation NqrM APL_0159 PF12832 MFS_1 like family APL_0160 PF03807 NADP oxidoreductase coenzyme F420-dependent APL_0160 PF14748 Pyrroline-5-carboxylate reductase dimerisation APL_0161 PF04381 Putative exonuclease, RdgC APL_0162 PF13419 Haloacid dehalogenase-like hydrolase APL_0165 PF02508 Rnf-Nqr subunit, membrane protein APL_0166 PF04060 Putative Fe-S cluster APL_0167 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APL_0167 PF13375 RnfC Barrel sandwich hybrid domain APL_0167 PF12838 4Fe-4S dicluster domain APL_0168 PF03458 UPF0126 domain APL_0169 PF03116 NQR2, RnfD, RnfE family APL_0170 PF04205 FMN-binding domain APL_0171 PF02508 Rnf-Nqr subunit, membrane protein APL_0172 PF03279 Bacterial lipid A biosynthesis acyltransferase APL_0175 PF01258 Prokaryotic dksA/traR C4-type zinc finger APL_0176 PF12626 Polymerase A arginine-rich C-terminus APL_0176 PF12627 Probable RNA and SrmB- binding site of polymerase A APL_0176 PF01743 Poly A polymerase head domain APL_0177 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APL_0179 PF11739 Dicarboxylate transport APL_0181 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APL_0182 PF00929 Exonuclease APL_0184 PF02153 Prephenate dehydrogenase APL_0184 PF01817 Chorismate mutase type II APL_0185 PF00793 DAHP synthetase I family APL_0186 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APL_0187 PF00224 Pyruvate kinase, barrel domain APL_0187 PF02887 Pyruvate kinase, alpha/beta domain APL_0188 PF00300 Histidine phosphatase superfamily (branch 1) APL_0189 PF01207 Dihydrouridine synthase (Dus) APL_0190 PF02954 Bacterial regulatory protein, Fis family APL_0191 PF00209 Sodium:neurotransmitter symporter family APL_0192 PF02086 D12 class N6 adenine-specific DNA methyltransferase APL_0193 PF01761 3-dehydroquinate synthase APL_0194 PF01202 Shikimate kinase APL_0195 PF00905 Penicillin binding protein transpeptidase domain APL_0195 PF00912 Transglycosylase APL_0195 PF17092 Penicillin-binding protein OB-like domain APL_0196 PF11104 Type IV pilus assembly protein PilM; APL_0200 PF03958 Bacterial type II/III secretion system short domain APL_0200 PF00263 Bacterial type II and III secretion system protein APL_0201 PF01029 NusB family APL_0202 PF02769 AIR synthase related protein, C-terminal domain APL_0202 PF00586 AIR synthase related protein, N-terminal domain APL_0203 PF04608 Phosphatidylglycerophosphatase A APL_0204 PF01810 LysE type translocator APL_0205 PF00588 SpoU rRNA Methylase family APL_0205 PF08032 RNA 2'-O ribose methyltransferase substrate binding APL_0206 PF00459 Inositol monophosphatase family APL_0207 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APL_0207 PF02780 Transketolase, C-terminal domain APL_0207 PF02779 Transketolase, pyrimidine binding domain APL_0208 PF00665 Integrase core domain APL_0208 PF13333 Integrase core domain APL_0209 PF13333 Integrase core domain APL_0209 PF00665 Integrase core domain APL_0209 PF13276 HTH-like domain APL_0211 PF00464 Serine hydroxymethyltransferase APL_0212 PF01513 ATP-NAD kinase APL_0213 PF18019 HD domain APL_0214 PF01867 CRISPR associated protein Cas1 APL_0216 PF09615 CRISPR-associated protein (Cas_Csy3) APL_0217 PF09614 CRISPR-associated protein (Cas_Csy2) APL_0219 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APL_0219 PF02824 TGS domain APL_0219 PF03129 Anticodon binding domain APL_0219 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APL_0220 PF03783 Curli production assembly/transport component CsgG APL_0222 PF05643 Putative bacterial lipoprotein (DUF799) APL_0223 PF05198 Translation initiation factor IF-3, N-terminal domain APL_0223 PF00707 Translation initiation factor IF-3, C-terminal domain APL_0224 PF01632 Ribosomal protein L35 APL_0225 PF00453 Ribosomal protein L20 APL_0228 PF01595 Cyclin M transmembrane N-terminal domain APL_0228 PF03471 Transporter associated domain APL_0228 PF00571 CBS domain APL_0229 PF00849 RNA pseudouridylate synthase APL_0230 PF00300 Histidine phosphatase superfamily (branch 1) APL_0231 PF03652 Holliday junction resolvase APL_0232 PF02622 Uncharacterized ACR, COG1678 APL_0233 PF04452 RNA methyltransferase APL_0235 PF01722 BolA-like protein APL_0239 PF07516 SecA Wing and Scaffold domain APL_0239 PF01043 SecA preprotein cross-linking domain APL_0239 PF07517 SecA DEAD-like domain APL_0239 PF02810 SEC-C motif APL_0241 PF00293 NUDIX domain APL_0242 PF01118 Semialdehyde dehydrogenase, NAD binding domain APL_0243 PF00696 Amino acid kinase family APL_0244 PF00202 Aminotransferase class-III APL_0246 PF07715 TonB-dependent Receptor Plug Domain APL_0246 PF00593 TonB dependent receptor APL_0247 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APL_0247 PF07498 Rho termination factor, N-terminal domain APL_0247 PF07497 Rho termination factor, RNA-binding domain APL_0248 PF00291 Pyridoxal-phosphate dependent enzyme APL_0249 PF00288 GHMP kinases N terminal domain APL_0249 PF08544 GHMP kinases C terminal APL_0250 PF00742 Homoserine dehydrogenase APL_0250 PF03447 Homoserine dehydrogenase, NAD binding domain APL_0250 PF00696 Amino acid kinase family APL_0250 PF01842 ACT domain APL_0250 PF13840 ACT domain APL_0251 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APL_0251 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APL_0252 PF01168 Alanine racemase, N-terminal domain APL_0252 PF00842 Alanine racemase, C-terminal domain APL_0253 PF13538 UvrD-like helicase C-terminal domain APL_0254 PF07687 Peptidase dimerisation domain APL_0254 PF01546 Peptidase family M20/M25/M40 APL_0255 PF00156 Phosphoribosyl transferase domain APL_0256 PF00625 Guanylate kinase APL_0257 PF02321 Outer membrane efflux protein APL_0258 PF03658 RnfH family Ubiquitin APL_0259 PF03364 Polyketide cyclase / dehydrase and lipid transport APL_0260 PF03459 TOBE domain APL_0260 PF00005 ABC transporter APL_0261 PF00528 Binding-protein-dependent transport system inner membrane component APL_0263 PF01061 ABC-2 type transporter APL_0264 PF00005 ABC transporter APL_0265 PF12170 DNA polymerase III tau subunit V interacting with alpha APL_0265 PF12169 DNA polymerase III subunits gamma and tau domain III APL_0266 PF00156 Phosphoribosyl transferase domain APL_0268 PF01042 Endoribonuclease L-PSP APL_0269 PF00291 Pyridoxal-phosphate dependent enzyme APL_0270 PF04073 Aminoacyl-tRNA editing domain APL_0271 PF00005 ABC transporter APL_0272 PF01297 Zinc-uptake complex component A periplasmic APL_0273 PF04358 DsrC like protein APL_0274 PF01027 Inhibitor of apoptosis-promoting Bax1 APL_0275 PF01066 CDP-alcohol phosphatidyltransferase APL_0277 PF08459 UvrC Helix-hairpin-helix N-terminal APL_0277 PF01541 GIY-YIG catalytic domain APL_0277 PF02151 UvrB/uvrC motif APL_0278 PF01026 TatD related DNase APL_0279 PF00580 UvrD/REP helicase N-terminal domain APL_0279 PF13361 UvrD-like helicase C-terminal domain APL_0280 PF08402 TOBE domain APL_0280 PF00005 ABC transporter APL_0281 PF00528 Binding-protein-dependent transport system inner membrane component APL_0282 PF00528 Binding-protein-dependent transport system inner membrane component APL_0283 PF07499 RuvA, C-terminal domain APL_0283 PF01330 RuvA N terminal domain APL_0284 PF17864 RuvB AAA lid domain APL_0284 PF05491 RuvB C-terminal winged helix domain APL_0284 PF05496 Holliday junction DNA helicase RuvB P-loop domain APL_0286 PF03989 DNA gyrase C-terminal domain, beta-propeller APL_0286 PF00521 DNA gyrase/topoisomerase IV, subunit A APL_0290 PF01420 Type I restriction modification DNA specificity domain APL_0293 PF18766 SWI2/SNF2 ATPase APL_0293 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APL_0293 PF12008 Type I restriction and modification enzyme - subunit R C terminal APL_0295 PF00899 ThiF family APL_0296 PF17274 Family of unknown function (DUF5339) APL_0297 PF01654 Cytochrome bd terminal oxidase subunit I APL_0298 PF02322 Cytochrome bd terminal oxidase subunit II APL_0299 PF03061 Thioesterase superfamily APL_0300 PF01618 MotA/TolQ/ExbB proton channel family APL_0301 PF02472 Biopolymer transport protein ExbD/TolR APL_0302 PF06519 TolA C-terminal APL_0302 PF06519 TolA C-terminal APL_0303 PF04052 TolB amino-terminal domain APL_0303 PF07676 WD40-like Beta Propeller Repeat APL_0304 PF00691 OmpA family APL_0306 PF00226 DnaJ domain APL_0306 PF05099 Tellurite resistance protein TerB APL_0307 PF01207 Dihydrouridine synthase (Dus) APL_0308 PF05128 Domain of unknown function (DUF697) APL_0310 PF00994 Probable molybdopterin binding domain APL_0310 PF03454 MoeA C-terminal region (domain IV) APL_0310 PF03453 MoeA N-terminal region (domain I and II) APL_0311 PF00899 ThiF family APL_0312 PF05958 tRNA (Uracil-5-)-methyltransferase APL_0312 PF01938 TRAM domain APL_0313 PF01966 HD domain APL_0313 PF13286 Phosphohydrolase-associated domain APL_0314 PF12137 RNA polymerase recycling family C-terminal APL_0314 PF18337 RapA N-terminal Tudor like domain APL_0314 PF18339 RapA N-terminal Tudor like domain 1 APL_0314 PF00176 SNF2 family N-terminal domain APL_0314 PF00271 Helicase conserved C-terminal domain APL_0315 PF00849 RNA pseudouridylate synthase APL_0316 PF01510 N-acetylmuramoyl-L-alanine amidase APL_0317 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APL_0318 PF00156 Phosphoribosyl transferase domain APL_0319 PF01717 Cobalamin-independent synthase, Catalytic domain APL_0320 PF01053 Cys/Met metabolism PLP-dependent enzyme APL_0321 PF02600 Disulfide bond formation protein DsbB APL_0322 PF06450 Bacterial Na+/H+ antiporter B (NhaB) APL_0323 PF00392 Bacterial regulatory proteins, gntR family APL_0323 PF07840 FadR C-terminal domain APL_0324 PF02562 PhoH-like protein APL_0326 PF00472 RF-1 domain APL_0326 PF03462 PCRF domain APL_0327 PF00586 AIR synthase related protein, N-terminal domain APL_0327 PF02769 AIR synthase related protein, C-terminal domain APL_0328 PF00293 NUDIX domain APL_0329 PF01494 FAD binding domain APL_0333 PF01494 FAD binding domain APL_0334 PF03668 P-loop ATPase protein family APL_0335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APL_0336 PF00005 ABC transporter APL_0336 PF12399 Branched-chain amino acid ATP-binding cassette transporter APL_0337 PF03968 OstA-like protein APL_0339 PF00311 Phosphoenolpyruvate carboxylase APL_0340 PF04536 TPM domain APL_0342 PF04011 LemA family APL_0343 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APL_0344 PF00294 pfkB family carbohydrate kinase APL_0345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APL_0345 PF00381 PTS HPr component phosphorylation site APL_0346 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APL_0346 PF02806 Alpha amylase, C-terminal all-beta domain APL_0346 PF00128 Alpha amylase, catalytic domain APL_0347 PF00128 Alpha amylase, catalytic domain APL_0347 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APL_0347 PF18390 Glycogen debranching enzyme C-terminal domain APL_0348 PF00483 Nucleotidyl transferase APL_0349 PF00534 Glycosyl transferases group 1 APL_0349 PF08323 Starch synthase catalytic domain APL_0350 PF00343 Carbohydrate phosphorylase APL_0351 PF00334 Nucleoside diphosphate kinase APL_0352 PF09334 tRNA synthetases class I (M) APL_0352 PF08264 Anticodon-binding domain of tRNA APL_0352 PF01588 Putative tRNA binding domain APL_0353 PF13378 Enolase C-terminal domain-like APL_0354 PF01479 S4 domain APL_0354 PF00849 RNA pseudouridylate synthase APL_0355 PF07690 Major Facilitator Superfamily APL_0358 PF01261 Xylose isomerase-like TIM barrel APL_0359 PF00877 NlpC/P60 family APL_0360 PF00717 Peptidase S24-like APL_0361 PF01228 Glycine radical APL_0362 PF03167 Uracil DNA glycosylase superfamily APL_0363 PF04393 Protein of unknown function (DUF535) APL_0364 PF00082 Subtilase family APL_0364 PF03797 Autotransporter beta-domain APL_0365 PF00271 Helicase conserved C-terminal domain APL_0365 PF04408 Helicase associated domain (HA2) APL_0365 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APL_0365 PF11898 Domain of unknown function (DUF3418) APL_0365 PF00270 DEAD/DEAH box helicase APL_0366 PF04284 Protein of unknown function (DUF441) APL_0367 PF01025 GrpE APL_0368 PF13416 Bacterial extracellular solute-binding protein APL_0369 PF01554 MatE APL_0370 PF12705 PD-(D/E)XK nuclease superfamily APL_0370 PF00580 UvrD/REP helicase N-terminal domain APL_0370 PF13361 UvrD-like helicase C-terminal domain APL_0371 PF00795 Carbon-nitrogen hydrolase APL_0372 PF00571 CBS domain APL_0372 PF03471 Transporter associated domain APL_0373 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) APL_0374 PF00230 Major intrinsic protein APL_0375 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APL_0375 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APL_0376 PF02190 ATP-dependent protease La (LON) substrate-binding domain APL_0376 PF00004 ATPase family associated with various cellular activities (AAA) APL_0376 PF05362 Lon protease (S16) C-terminal proteolytic domain APL_0377 PF07690 Major Facilitator Superfamily APL_0378 PF03009 Glycerophosphoryl diester phosphodiesterase family APL_0379 PF01266 FAD dependent oxidoreductase APL_0379 PF04324 BFD-like [2Fe-2S] binding domain APL_0380 PF00890 FAD binding domain APL_0381 PF13183 4Fe-4S dicluster domain APL_0381 PF02754 Cysteine-rich domain APL_0382 PF01872 RibD C-terminal domain APL_0382 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APL_0383 PF00677 Lumazine binding domain APL_0384 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APL_0384 PF00925 GTP cyclohydrolase II APL_0385 PF00885 6,7-dimethyl-8-ribityllumazine synthase APL_0386 PF01272 Transcription elongation factor, GreA/GreB, C-term APL_0386 PF03449 Transcription elongation factor, N-terminal APL_0387 PF01380 SIS domain APL_0387 PF00571 CBS domain APL_0388 PF00883 Cytosol aminopeptidase family, catalytic domain APL_0388 PF12404 Peptidase APL_0389 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) APL_0390 PF01758 Sodium Bile acid symporter family APL_0391 PF13533 Biotin-lipoyl like APL_0393 PF00682 HMGL-like APL_0393 PF08502 LeuA allosteric (dimerisation) domain APL_0394 PF08281 Sigma-70, region 4 APL_0394 PF04542 Sigma-70 region 2 APL_0395 PF03872 Anti sigma-E protein RseA, N-terminal domain APL_0395 PF03873 Anti sigma-E protein RseA, C-terminal domain APL_0397 PF13193 AMP-binding enzyme C-terminal domain APL_0397 PF00501 AMP-binding enzyme APL_0399 PF00398 Ribosomal RNA adenine dimethylase APL_0400 PF00639 PPIC-type PPIASE domain APL_0400 PF09312 SurA N-terminal domain APL_0401 PF00156 Phosphoribosyl transferase domain APL_0402 PF01467 Cytidylyltransferase-like APL_0402 PF00294 pfkB family carbohydrate kinase APL_0403 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APL_0403 PF01926 50S ribosome-binding GTPase APL_0404 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APL_0404 PF01488 Shikimate / quinate 5-dehydrogenase APL_0404 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APL_0405 PF13291 ACT domain APL_0405 PF04607 Region found in RelA / SpoT proteins APL_0405 PF02824 TGS domain APL_0406 PF13288 DXP reductoisomerase C-terminal domain APL_0406 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APL_0406 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APL_0407 PF00132 Bacterial transferase hexapeptide (six repeats) APL_0407 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APL_0408 PF07977 FabA-like domain APL_0409 PF00132 Bacterial transferase hexapeptide (six repeats) APL_0409 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APL_0411 PF07244 Surface antigen variable number repeat APL_0411 PF01103 Surface antigen APL_0412 PF02163 Peptidase family M50 APL_0414 PF01255 Putative undecaprenyl diphosphate synthase APL_0415 PF00753 Metallo-beta-lactamase superfamily APL_0415 PF16123 Hydroxyacylglutathione hydrolase C-terminus APL_0416 PF00480 ROK family APL_0417 PF01569 PAP2 superfamily APL_0418 PF01985 CRS1 / YhbY (CRM) domain APL_0419 PF00535 Glycosyl transferase family 2 APL_0420 PF00768 D-alanyl-D-alanine carboxypeptidase APL_0421 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APL_0422 PF00764 Arginosuccinate synthase APL_0423 PF00075 RNase H APL_0424 PF02674 Colicin V production protein APL_0425 PF00156 Phosphoribosyl transferase domain APL_0427 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APL_0427 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APL_0428 PF04355 SmpA / OmlA family APL_0429 PF04245 37-kD nucleoid-associated bacterial protein APL_0430 PF01042 Endoribonuclease L-PSP APL_0432 PF00180 Isocitrate/isopropylmalate dehydrogenase APL_0433 PF01641 SelR domain APL_0434 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APL_0434 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APL_0436 PF04085 rod shape-determining protein MreC APL_0437 PF04093 rod shape-determining protein MreD APL_0438 PF00004 ATPase family associated with various cellular activities (AAA) APL_0438 PF16193 AAA C-terminal domain APL_0438 PF12002 MgsA AAA+ ATPase C terminal APL_0439 PF00950 ABC 3 transport family APL_0440 PF13230 Glutamine amidotransferases class-II APL_0441 PF00561 alpha/beta hydrolase fold APL_0442 PF02698 DUF218 domain APL_0443 PF13018 Extended Signal Peptide of Type V secretion system APL_0443 PF03895 YadA-like membrane anchor domain APL_0443 PF05662 Coiled stalk of trimeric autotransporter adhesin APL_0443 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin APL_0444 PF02589 LUD domain APL_0445 PF11870 Domain of unknown function (DUF3390) APL_0445 PF13183 4Fe-4S dicluster domain APL_0445 PF02589 LUD domain APL_0446 PF02754 Cysteine-rich domain APL_0447 PF02652 L-lactate permease APL_0448 PF00816 H-NS histone family APL_0449 PF03553 Na+/H+ antiporter family APL_0450 PF13407 Periplasmic binding protein domain APL_0451 PF00549 CoA-ligase APL_0451 PF02629 CoA binding domain APL_0452 PF00549 CoA-ligase APL_0452 PF08442 ATP-grasp domain APL_0453 PF04393 Protein of unknown function (DUF535) APL_0454 PF00364 Biotin-requiring enzyme APL_0454 PF02817 e3 binding domain APL_0454 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APL_0455 PF16078 2-oxoglutarate dehydrogenase N-terminus APL_0455 PF00676 Dehydrogenase E1 component APL_0455 PF02779 Transketolase, pyrimidine binding domain APL_0455 PF16870 2-oxoglutarate dehydrogenase C-terminal APL_0456 PF00005 ABC transporter APL_0457 PF04225 Opacity-associated protein A LysM-like domain APL_0457 PF01551 Peptidase family M23 APL_0458 PF10411 Disulfide bond isomerase protein N-terminus APL_0458 PF13098 Thioredoxin-like domain APL_0459 PF01368 DHH family APL_0459 PF02272 DHHA1 domain APL_0459 PF17768 RecJ OB domain APL_0460 PF00691 OmpA family APL_0460 PF01389 OmpA-like transmembrane domain APL_0462 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APL_0462 PF00672 HAMP domain APL_0462 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APL_0462 PF07730 Histidine kinase APL_0464 PF01725 Ham1 family APL_0465 PF01906 Putative heavy-metal-binding APL_0466 PF01268 Formate--tetrahydrofolate ligase APL_0467 PF03692 Putative zinc- or iron-chelating domain APL_0468 PF00106 short chain dehydrogenase APL_0469 PF00291 Pyridoxal-phosphate dependent enzyme APL_0470 PF00290 Tryptophan synthase alpha chain APL_0471 PF12441 CopG antitoxin of type II toxin-antitoxin system APL_0473 PF00476 DNA polymerase family A APL_0473 PF01367 5'-3' exonuclease, C-terminal SAM fold APL_0473 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APL_0473 PF01612 3'-5' exonuclease APL_0474 PF03548 Outer membrane lipoprotein carrier protein LolA APL_0475 PF01371 Trp repressor protein APL_0476 PF00912 Transglycosylase APL_0477 PF02627 Carboxymuconolactone decarboxylase family APL_0483 PF00881 Nitroreductase family APL_0484 PF18030 RimK PreATP-grasp domain APL_0484 PF08443 RimK-like ATP-grasp domain APL_0485 PF02698 DUF218 domain APL_0486 PF03949 Malic enzyme, NAD binding domain APL_0486 PF01515 Phosphate acetyl/butaryl transferase APL_0486 PF00390 Malic enzyme, N-terminal domain APL_0487 PF01386 Ribosomal L25p family APL_0494 PF04381 Putative exonuclease, RdgC APL_0502 PF06147 Protein of unknown function (DUF968) APL_0510 PF00574 Clp protease APL_0522 PF00877 NlpC/P60 family APL_0526 PF06226 Protein of unknown function (DUF1007) APL_0527 PF03824 High-affinity nickel-transport protein APL_0528 PF01235 Sodium:alanine symporter family APL_0531 PF00528 Binding-protein-dependent transport system inner membrane component APL_0532 PF00899 ThiF family APL_0533 PF00899 ThiF family APL_0534 PF02597 ThiS family APL_0535 PF05690 Thiazole biosynthesis protein ThiG APL_0536 PF06968 Biotin and Thiamin Synthesis associated domain APL_0536 PF04055 Radical SAM superfamily APL_0537 PF03070 TENA/THI-4/PQQC family APL_0538 PF09084 NMT1/THI5 like APL_0539 PF08543 Phosphomethylpyrimidine kinase APL_0540 PF02581 Thiamine monophosphate synthase APL_0541 PF00679 Elongation factor G C-terminus APL_0541 PF00009 Elongation factor Tu GTP binding domain APL_0541 PF03144 Elongation factor Tu domain 2 APL_0541 PF06421 GTP-binding protein LepA C-terminus APL_0542 PF10502 Signal peptidase, peptidase S26 APL_0543 PF00035 Double-stranded RNA binding motif APL_0543 PF14622 Ribonuclease-III-like APL_0544 PF01926 50S ribosome-binding GTPase APL_0544 PF07650 KH domain APL_0545 PF02565 Recombination protein O C terminal APL_0545 PF11967 Recombination protein O N terminal APL_0552 PF00437 Type II/IV secretion system protein APL_0555 PF03958 Bacterial type II/III secretion system short domain APL_0555 PF00263 Bacterial type II and III secretion system protein APL_0560 PF00271 Helicase conserved C-terminal domain APL_0560 PF00270 DEAD/DEAH box helicase APL_0562 PF05872 Bacterial protein of unknown function (DUF853) APL_0564 PF00528 Binding-protein-dependent transport system inner membrane component APL_0565 PF06472 ABC transporter transmembrane region 2 APL_0565 PF00005 ABC transporter APL_0566 PF00318 Ribosomal protein S2 APL_0567 PF00889 Elongation factor TS APL_0568 PF00884 Sulfatase APL_0569 PF00696 Amino acid kinase family APL_0570 PF01765 Ribosome recycling factor APL_0571 PF00155 Aminotransferase class I and II APL_0571 PF00392 Bacterial regulatory proteins, gntR family APL_0572 PF01680 SOR/SNZ family APL_0573 PF01174 SNO glutamine amidotransferase family APL_0574 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APL_0575 PF00270 DEAD/DEAH box helicase APL_0575 PF03880 DbpA RNA binding domain APL_0575 PF00271 Helicase conserved C-terminal domain APL_0577 PF01138 3' exoribonuclease family, domain 1 APL_0577 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APL_0577 PF00013 KH domain APL_0577 PF03725 3' exoribonuclease family, domain 2 APL_0577 PF00575 S1 RNA binding domain APL_0578 PF03989 DNA gyrase C-terminal domain, beta-propeller APL_0578 PF00521 DNA gyrase/topoisomerase IV, subunit A APL_0579 PF17192 MukF middle domain APL_0579 PF17193 MukF C-terminal domain APL_0579 PF03882 MukF winged-helix domain APL_0580 PF04288 MukE-like family APL_0581 PF16330 MukB hinge domain APL_0581 PF04310 MukB N-terminal APL_0582 PF07690 Major Facilitator Superfamily APL_0583 PF11893 Domain of unknown function (DUF3413) APL_0583 PF00884 Sulfatase APL_0584 PF07208 Protein of unknown function (DUF1414) APL_0585 PF00440 Bacterial regulatory proteins, tetR family APL_0586 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APL_0587 PF00873 AcrB/AcrD/AcrF family APL_0588 PF12804 MobA-like NTP transferase domain APL_0588 PF00132 Bacterial transferase hexapeptide (six repeats) APL_0590 PF08942 Domain of unknown function (DUF1919) APL_0591 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APL_0591 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APL_0591 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APL_0591 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APL_0592 PF00958 GMP synthase C terminal domain APL_0592 PF00117 Glutamine amidotransferase class-I APL_0592 PF02540 NAD synthase APL_0593 PF00478 IMP dehydrogenase / GMP reductase domain APL_0593 PF00571 CBS domain APL_0594 PF01728 FtsJ-like methyltransferase APL_0595 PF06480 FtsH Extracellular APL_0595 PF17862 AAA+ lid domain APL_0595 PF01434 Peptidase family M41 APL_0595 PF00004 ATPase family associated with various cellular activities (AAA) APL_0596 PF03222 Tryptophan/tyrosine permease family APL_0597 PF03222 Tryptophan/tyrosine permease family APL_0598 PF01966 HD domain APL_0598 PF08335 GlnD PII-uridylyltransferase APL_0599 PF06295 Protein of unknown function (DUF1043) APL_0600 PF00572 Ribosomal protein L13 APL_0601 PF00380 Ribosomal protein S9/S16 APL_0602 PF03883 Peroxide stress protein YaaA APL_0604 PF16916 Dimerisation domain of Zinc Transporter APL_0604 PF01545 Cation efflux family APL_0605 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) APL_0606 PF00375 Sodium:dicarboxylate symporter family APL_0607 PF00881 Nitroreductase family APL_0608 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APL_0608 PF01409 tRNA synthetases class II core domain (F) APL_0609 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APL_0609 PF03147 Ferredoxin-fold anticodon binding domain APL_0609 PF03484 tRNA synthetase B5 domain APL_0609 PF01588 Putative tRNA binding domain APL_0609 PF03483 B3/4 domain APL_0610 PF00216 Bacterial DNA-binding protein APL_0611 PF00877 NlpC/P60 family APL_0612 PF00665 Integrase core domain APL_0612 PF13333 Integrase core domain APL_0615 PF00480 ROK family APL_0615 PF01047 MarR family APL_0616 PF00570 HRDC domain APL_0616 PF01612 3'-5' exonuclease APL_0617 PF01037 Lrp/AsnC ligand binding domain APL_0618 PF09397 Ftsk gamma domain APL_0618 PF17854 FtsK alpha domain APL_0618 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APL_0618 PF01580 FtsK/SpoIIIE family APL_0619 PF04228 Putative neutral zinc metallopeptidase APL_0620 PF00793 DAHP synthetase I family APL_0621 PF00814 Glycoprotease family APL_0622 PF00265 Thymidine kinase APL_0623 PF06005 Cell division protein ZapB APL_0624 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APL_0625 PF01784 NIF3 (NGG1p interacting factor 3) APL_0626 PF12704 MacB-like periplasmic core domain APL_0626 PF02687 FtsX-like permease family APL_0626 PF00005 ABC transporter APL_0627 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APL_0627 PF00512 His Kinase A (phospho-acceptor) domain APL_0627 PF16527 Two-component sensor protein CpxA, periplasmic domain APL_0627 PF00672 HAMP domain APL_0629 PF00072 Response regulator receiver domain APL_0629 PF00486 Transcriptional regulatory protein, C terminal APL_0630 PF03819 MazG nucleotide pyrophosphohydrolase domain APL_0631 PF17848 Acetyl-coA carboxylase zinc finger domain APL_0631 PF01039 Carboxyl transferase domain APL_0632 PF08245 Mur ligase middle domain APL_0633 PF02384 N-6 DNA Methylase APL_0634 PF01420 Type I restriction modification DNA specificity domain APL_0636 PF18766 SWI2/SNF2 ATPase APL_0636 PF11867 Domain of unknown function (DUF3387) APL_0636 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APL_0637 PF02576 RimP N-terminal domain APL_0637 PF17384 RimP C-terminal SH3 domain APL_0638 PF08529 NusA N-terminal domain APL_0638 PF13184 NusA-like KH domain APL_0638 PF00575 S1 RNA binding domain APL_0639 PF11987 Translation-initiation factor 2 APL_0639 PF04760 Translation initiation factor IF-2, N-terminal region APL_0639 PF00009 Elongation factor Tu GTP binding domain APL_0640 PF02033 Ribosome-binding factor A APL_0641 PF01509 TruB family pseudouridylate synthase (N terminal domain) APL_0641 PF16198 tRNA pseudouridylate synthase B C-terminal domain APL_0641 PF09157 Pseudouridine synthase II TruB, C-terminal APL_0642 PF13406 Transglycosylase SLT domain APL_0643 PF07411 Domain of unknown function (DUF1508) APL_0644 PF01515 Phosphate acetyl/butaryl transferase APL_0644 PF07085 DRTGG domain APL_0645 PF00871 Acetokinase family APL_0646 PF00149 Calcineurin-like phosphoesterase APL_0646 PF02872 5'-nucleotidase, C-terminal domain APL_0649 PF13609 Gram-negative porin APL_0651 PF00483 Nucleotidyl transferase APL_0652 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APL_0652 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APL_0652 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APL_0652 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APL_0653 PF02599 Global regulator protein family APL_0654 PF01411 tRNA synthetases class II (A) APL_0654 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APL_0654 PF02272 DHHA1 domain APL_0655 PF00582 Universal stress protein family APL_0656 PF00325 Bacterial regulatory proteins, crp family APL_0656 PF00027 Cyclic nucleotide-binding domain APL_0657 PF04386 Stringent starvation protein B APL_0658 PF02798 Glutathione S-transferase, N-terminal domain APL_0658 PF00043 Glutathione S-transferase, C-terminal domain APL_0659 PF00731 AIR carboxylase APL_0660 PF00710 Asparaginase, N-terminal APL_0660 PF17763 Glutaminase/Asparaginase C-terminal domain APL_0661 PF02222 ATP-grasp domain APL_0661 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APL_0662 PF00155 Aminotransferase class I and II APL_0663 PF00557 Metallopeptidase family M24 APL_0663 PF05195 Aminopeptidase P, N-terminal domain APL_0664 PF13173 AAA domain APL_0664 PF13635 Domain of unknown function (DUF4143) APL_0665 PF01850 PIN domain APL_0667 PF04851 Type III restriction enzyme, res subunit APL_0667 PF12344 Ultra-violet resistance protein B APL_0667 PF00271 Helicase conserved C-terminal domain APL_0667 PF02151 UvrB/uvrC motif APL_0667 PF17757 UvrB interaction domain APL_0668 PF09375 Imelysin APL_0669 PF10518 TAT (twin-arginine translocation) pathway signal sequence APL_0669 PF04261 Dyp-type peroxidase family APL_0671 PF02811 PHP domain APL_0673 PF00929 Exonuclease APL_0673 PF08411 Exonuclease C-terminal APL_0674 PF00654 Voltage gated chloride channel APL_0675 PF01336 OB-fold nucleic acid binding domain APL_0675 PF00152 tRNA synthetases class II (D, K and N) APL_0676 PF04055 Radical SAM superfamily APL_0678 PF01132 Elongation factor P (EF-P) OB domain APL_0678 PF08207 Elongation factor P (EF-P) KOW-like domain APL_0678 PF09285 Elongation factor P, C-terminal APL_0679 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APL_0679 PF00749 tRNA synthetases class I (E and Q), catalytic domain APL_0680 PF07690 Major Facilitator Superfamily APL_0681 PF01464 Transglycosylase SLT domain APL_0681 PF14718 Soluble lytic murein transglycosylase L domain APL_0682 PF00156 Phosphoribosyl transferase domain APL_0683 PF01053 Cys/Met metabolism PLP-dependent enzyme APL_0684 PF01113 Dihydrodipicolinate reductase, N-terminus APL_0684 PF05173 Dihydrodipicolinate reductase, C-terminus APL_0685 PF01728 FtsJ-like methyltransferase APL_0685 PF18125 RlmM ferredoxin-like domain APL_0686 PF04241 Protein of unknown function (DUF423) APL_0687 PF01565 FAD binding domain APL_0687 PF09330 D-lactate dehydrogenase, membrane binding APL_0688 PF00384 Molybdopterin oxidoreductase APL_0688 PF18364 Molybdopterin oxidoreductase N-terminal domain APL_0688 PF01568 Molydopterin dinucleotide binding domain APL_0689 PF03264 NapC/NirT cytochrome c family, N-terminal region APL_0690 PF06463 Molybdenum Cofactor Synthesis C APL_0690 PF04055 Radical SAM superfamily APL_0691 PF01967 MoaC family APL_0692 PF02597 ThiS family APL_0693 PF02391 MoaE protein APL_0694 PF02130 Uncharacterized protein family UPF0054 APL_0695 PF17176 tRNA-binding domain APL_0695 PF13718 GNAT acetyltransferase 2 APL_0695 PF05127 Helicase APL_0696 PF01396 Topoisomerase DNA binding C4 zinc finger APL_0696 PF01751 Toprim domain APL_0696 PF08272 Topoisomerase I zinc-ribbon-like APL_0696 PF01131 DNA topoisomerase APL_0697 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_0697 PF03466 LysR substrate binding domain APL_0698 PF00583 Acetyltransferase (GNAT) family APL_0698 PF00696 Amino acid kinase family APL_0699 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APL_0700 PF00155 Aminotransferase class I and II APL_0701 PF01053 Cys/Met metabolism PLP-dependent enzyme APL_0702 PF00266 Aminotransferase class-V APL_0703 PF00271 Helicase conserved C-terminal domain APL_0703 PF00176 SNF2 family N-terminal domain APL_0705 PF01555 DNA methylase APL_0706 PF01380 SIS domain APL_0706 PF01418 Helix-turn-helix domain, rpiR family APL_0707 PF04074 YhcH/YjgK/YiaL APL_0708 PF02541 Ppx/GppA phosphatase family APL_0709 PF04363 Protein of unknown function (DUF496) APL_0710 PF00696 Amino acid kinase family APL_0710 PF01842 ACT domain APL_0711 PF03477 ATP cone domain APL_0712 PF05166 YcgL domain APL_0713 PF00772 DnaB-like helicase N terminal domain APL_0713 PF03796 DnaB-like helicase C terminal domain APL_0714 PF01497 Periplasmic binding protein APL_0715 PF01032 FecCD transport family APL_0716 PF01032 FecCD transport family APL_0717 PF00005 ABC transporter APL_0718 PF01865 Protein of unknown function DUF47 APL_0719 PF01384 Phosphate transporter family APL_0720 PF08239 Bacterial SH3 domain APL_0722 PF01814 Hemerythrin HHE cation binding domain APL_0723 PF01702 Queuine tRNA-ribosyltransferase APL_0725 PF00313 'Cold-shock' DNA-binding domain APL_0726 PF00484 Carbonic anhydrase APL_0727 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APL_0727 PF00205 Thiamine pyrophosphate enzyme, central domain APL_0727 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APL_0728 PF10369 Small subunit of acetolactate synthase APL_0729 PF01523 Putative modulator of DNA gyrase APL_0730 PF04751 Protein of unknown function (DUF615) APL_0731 PF04247 Invasion gene expression up-regulator, SirB APL_0732 PF02441 Flavoprotein APL_0733 PF04474 Protein of unknown function (DUF554) APL_0735 PF01253 Translation initiation factor SUI1 APL_0736 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APL_0737 PF18073 Rubredoxin metal binding domain APL_0738 PF06305 Lipopolysaccharide assembly protein A domain APL_0739 PF00216 Bacterial DNA-binding protein APL_0740 PF00575 S1 RNA binding domain APL_0741 PF02224 Cytidylate kinase APL_0742 PF13180 PDZ domain APL_0743 PF03840 Preprotein translocase SecG subunit APL_0744 PF01131 DNA topoisomerase APL_0744 PF01751 Toprim domain APL_0747 PF03411 Penicillin-insensitive murein endopeptidase APL_0748 PF01264 Chorismate synthase APL_0749 PF00924 Mechanosensitive ion channel APL_0749 PF12795 Mechanosensitive ion channel porin domain APL_0749 PF12794 Mechanosensitive ion channel inner membrane domain 1 APL_0750 PF00924 Mechanosensitive ion channel APL_0750 PF12794 Mechanosensitive ion channel inner membrane domain 1 APL_0750 PF12795 Mechanosensitive ion channel porin domain APL_0751 PF00501 AMP-binding enzyme APL_0752 PF03925 SeqA protein C-terminal domain APL_0752 PF17206 SeqA protein N-terminal domain APL_0753 PF00561 alpha/beta hydrolase fold APL_0754 PF13649 Methyltransferase domain APL_0757 PF08206 Ribonuclease B OB domain APL_0757 PF00575 S1 RNA binding domain APL_0757 PF00773 RNB domain APL_0758 PF03788 LrgA family APL_0759 PF04172 LrgB-like family APL_0760 PF00149 Calcineurin-like phosphoesterase APL_0761 PF03889 Alternative ribosome-rescue factor A APL_0762 PF13649 Methyltransferase domain APL_0763 PF01594 AI-2E family transporter APL_0764 PF01933 Uncharacterised protein family UPF0052 APL_0765 PF02547 Queuosine biosynthesis protein APL_0766 PF13567 Domain of unknown function (DUF4131) APL_0766 PF03772 Competence protein APL_0766 PF00753 Metallo-beta-lactamase superfamily APL_0767 PF00375 Sodium:dicarboxylate symporter family APL_0768 PF01219 Prokaryotic diacylglycerol kinase APL_0769 PF00149 Calcineurin-like phosphoesterase APL_0769 PF02872 5'-nucleotidase, C-terminal domain APL_0771 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APL_0771 PF07992 Pyridine nucleotide-disulphide oxidoreductase APL_0772 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APL_0772 PF00364 Biotin-requiring enzyme APL_0772 PF02817 e3 binding domain APL_0773 PF17831 Pyruvate dehydrogenase E1 component middle domain APL_0773 PF00456 Transketolase, thiamine diphosphate binding domain APL_0774 PF01180 Dihydroorotate dehydrogenase APL_0775 PF14572 Phosphoribosyl synthetase-associated domain APL_0775 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APL_0776 PF00288 GHMP kinases N terminal domain APL_0776 PF08544 GHMP kinases C terminal APL_0777 PF03550 Outer membrane lipoprotein LolB APL_0778 PF00005 ABC transporter APL_0778 PF00664 ABC transporter transmembrane region APL_0779 PF04172 LrgB-like family APL_0781 PF13307 Helicase C-terminal domain APL_0781 PF06733 DEAD_2 APL_0782 PF17755 UvrA DNA-binding domain APL_0782 PF17760 UvrA interaction domain APL_0783 PF00436 Single-strand binding protein family APL_0788 PF03466 LysR substrate binding domain APL_0788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_0789 PF03060 Nitronate monooxygenase APL_0792 PF04237 YjbR APL_0793 PF00005 ABC transporter APL_0793 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APL_0794 PF00528 Binding-protein-dependent transport system inner membrane component APL_0794 PF12911 N-terminal TM domain of oligopeptide transport permease C APL_0795 PF00528 Binding-protein-dependent transport system inner membrane component APL_0796 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APL_0797 PF00158 Sigma-54 interaction domain APL_0797 PF18024 Helix-turn-helix domain APL_0798 PF13580 SIS domain APL_0800 PF01293 Phosphoenolpyruvate carboxykinase APL_0801 PF04977 Septum formation initiator APL_0802 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APL_0803 PF02542 YgbB family APL_0804 PF00884 Sulfatase APL_0805 PF00111 2Fe-2S iron-sulfur cluster binding domain APL_0805 PF03473 MOSC domain APL_0805 PF03476 MOSC N-terminal beta barrel domain APL_0806 PF02609 Exonuclease VII small subunit APL_0807 PF00348 Polyprenyl synthetase APL_0809 PF01336 OB-fold nucleic acid binding domain APL_0809 PF00152 tRNA synthetases class II (D, K and N) APL_0810 PF10150 Ribonuclease E/G family APL_0810 PF00575 S1 RNA binding domain APL_0811 PF18381 YcaO cyclodehydratase C-terminal domain APL_0811 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding APL_0812 PF04851 Type III restriction enzyme, res subunit APL_0812 PF08774 VRR-NUC domain APL_0813 PF18273 Type III R-M EcoP15I C-terminal domain APL_0813 PF01555 DNA methylase APL_0814 PF08003 Protein of unknown function (DUF1698) APL_0816 PF06725 3D domain APL_0816 PF03562 MltA specific insert domain APL_0817 PF13742 OB-fold nucleic acid binding domain APL_0817 PF02601 Exonuclease VII, large subunit APL_0818 PF00576 HIUase/Transthyretin family APL_0819 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APL_0819 PF00356 Bacterial regulatory proteins, lacI family APL_0820 PF09335 SNARE associated Golgi protein APL_0821 PF01751 Toprim domain APL_0821 PF00986 DNA gyrase B subunit, carboxyl terminus APL_0821 PF18053 DNA gyrase B subunit insert domain APL_0821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APL_0821 PF00204 DNA gyrase B APL_0822 PF01040 UbiA prenyltransferase family APL_0823 PF00455 DeoR C terminal sensor domain APL_0823 PF08220 DeoR-like helix-turn-helix domain APL_0824 PF08328 Adenylosuccinate lyase C-terminal APL_0824 PF00206 Lyase APL_0825 PF04356 Protein of unknown function (DUF489) APL_0826 PF00664 ABC transporter transmembrane region APL_0826 PF00005 ABC transporter APL_0827 PF00664 ABC transporter transmembrane region APL_0827 PF00005 ABC transporter APL_0828 PF04357 TamB, inner membrane protein subunit of TAM complex APL_0829 PF17243 POTRA domain TamA domain 1 APL_0829 PF01103 Surface antigen APL_0830 PF04748 Divergent polysaccharide deacetylase APL_0831 PF01551 Peptidase family M23 APL_0832 PF00300 Histidine phosphatase superfamily (branch 1) APL_0834 PF00485 Phosphoribulokinase / Uridine kinase family APL_0835 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) APL_0836 PF00440 Bacterial regulatory proteins, tetR family APL_0836 PF14278 Transcriptional regulator C-terminal region APL_0837 PF13533 Biotin-lipoyl like APL_0838 PF00005 ABC transporter APL_0840 PF02321 Outer membrane efflux protein APL_0841 PF02233 NAD(P) transhydrogenase beta subunit APL_0842 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APL_0842 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APL_0842 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APL_0843 PF00588 SpoU rRNA Methylase family APL_0844 PF14489 QueF-like protein APL_0844 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APL_0846 PF00578 AhpC/TSA family APL_0847 PF06969 HemN C-terminal domain APL_0847 PF04055 Radical SAM superfamily APL_0848 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APL_0849 PF00528 Binding-protein-dependent transport system inner membrane component APL_0850 PF00005 ABC transporter APL_0850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APL_0851 PF00005 ABC transporter APL_0851 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APL_0852 PF00890 FAD binding domain APL_0853 PF01717 Cobalamin-independent synthase, Catalytic domain APL_0854 PF02219 Methylenetetrahydrofolate reductase APL_0855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APL_0856 PF03222 Tryptophan/tyrosine permease family APL_0857 PF03315 Serine dehydratase beta chain APL_0857 PF03313 Serine dehydratase alpha chain APL_0858 PF01266 FAD dependent oxidoreductase APL_0858 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APL_0859 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APL_0859 PF00218 Indole-3-glycerol phosphate synthase APL_0860 PF02661 Fic/DOC family APL_0860 PF12728 Helix-turn-helix domain APL_0861 PF04287 tRNA pseudouridine synthase C APL_0862 PF00849 RNA pseudouridylate synthase APL_0863 PF03701 Uncharacterised protein family (UPF0181) APL_0865 PF01928 CYTH domain APL_0866 PF04317 YcjX-like family, DUF463 APL_0867 PF01668 SmpB protein APL_0868 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APL_0868 PF02403 Seryl-tRNA synthetase N-terminal domain APL_0869 PF01546 Peptidase family M20/M25/M40 APL_0869 PF07687 Peptidase dimerisation domain APL_0870 PF03606 C4-dicarboxylate anaerobic carrier APL_0871 PF03575 Peptidase family S51 APL_0872 PF13603 Leucyl-tRNA synthetase, Domain 2 APL_0872 PF00133 tRNA synthetases class I (I, L, M and V) APL_0872 PF08264 Anticodon-binding domain of tRNA APL_0873 PF04390 Lipopolysaccharide-assembly APL_0874 PF06144 DNA polymerase III, delta subunit APL_0874 PF14840 Processivity clamp loader gamma complex DNA pol III C-term APL_0875 PF03884 DNA gyrase inhibitor YacG APL_0876 PF01121 Dephospho-CoA kinase APL_0878 PF00482 Type II secretion system (T2SS), protein F APL_0879 PF00437 Type II/IV secretion system protein APL_0879 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APL_0880 PF07963 Prokaryotic N-terminal methylation motif APL_0881 PF18073 Rubredoxin metal binding domain APL_0883 PF00186 Dihydrofolate reductase APL_0884 PF00696 Amino acid kinase family APL_0884 PF01472 PUA domain APL_0885 PF01925 Sulfite exporter TauE/SafE APL_0886 PF10576 Iron-sulfur binding domain of endonuclease III APL_0886 PF00633 Helix-hairpin-helix motif APL_0886 PF00730 HhH-GPD superfamily base excision DNA repair protein APL_0887 PF00108 Thiolase, N-terminal domain APL_0887 PF02803 Thiolase, C-terminal domain APL_0888 PF00378 Enoyl-CoA hydratase/isomerase APL_0888 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APL_0888 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APL_0891 PF02634 FdhD/NarQ family APL_0892 PF01568 Molydopterin dinucleotide binding domain APL_0892 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APL_0892 PF00384 Molybdopterin oxidoreductase APL_0893 PF01568 Molydopterin dinucleotide binding domain APL_0893 PF00384 Molybdopterin oxidoreductase APL_0893 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APL_0894 PF09163 Formate dehydrogenase N, transmembrane APL_0894 PF13247 4Fe-4S dicluster domain APL_0895 PF01292 Prokaryotic cytochrome b561 APL_0896 PF04216 Protein involved in formate dehydrogenase formation APL_0897 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APL_0897 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APL_0899 PF00701 Dihydrodipicolinate synthetase family APL_0900 PF03279 Bacterial lipid A biosynthesis acyltransferase APL_0901 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APL_0902 PF01416 tRNA pseudouridine synthase APL_0903 PF01227 GTP cyclohydrolase I APL_0906 PF12464 Maltose acetyltransferase APL_0906 PF14602 Hexapeptide repeat of succinyl-transferase APL_0907 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APL_0908 PF03466 LysR substrate binding domain APL_0908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_0909 PF03180 NLPA lipoprotein APL_0910 PF03180 NLPA lipoprotein APL_0911 PF00528 Binding-protein-dependent transport system inner membrane component APL_0912 PF09383 NIL domain APL_0912 PF00005 ABC transporter APL_0913 PF01406 tRNA synthetases class I (C) catalytic domain APL_0913 PF09190 DALR domain APL_0914 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APL_0915 PF12627 Probable RNA and SrmB- binding site of polymerase A APL_0915 PF01743 Poly A polymerase head domain APL_0915 PF01966 HD domain APL_0917 PF13333 Integrase core domain APL_0917 PF00665 Integrase core domain APL_0917 PF13276 HTH-like domain APL_0918 PF00665 Integrase core domain APL_0918 PF13333 Integrase core domain APL_0919 PF00593 TonB dependent receptor APL_0919 PF07715 TonB-dependent Receptor Plug Domain APL_0923 PF04384 Iron-sulphur cluster assembly APL_0924 PF00111 2Fe-2S iron-sulfur cluster binding domain APL_0925 PF00012 Hsp70 protein APL_0926 PF10946 Protein of unknown function DUF2625 APL_0928 PF07743 HSCB C-terminal oligomerisation domain APL_0929 PF01521 Iron-sulphur cluster biosynthesis APL_0930 PF01592 NifU-like N terminal domain APL_0931 PF00266 Aminotransferase class-V APL_0932 PF02082 Transcriptional regulator APL_0933 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) APL_0934 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APL_0934 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APL_0935 PF00072 Response regulator receiver domain APL_0935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APL_0935 PF00512 His Kinase A (phospho-acceptor) domain APL_0935 PF18415 Histidine kinase receptor ArcB trans-membrane domain APL_0935 PF01627 Hpt domain APL_0935 PF00989 PAS fold APL_0937 PF01713 Smr domain APL_0939 PF08241 Methyltransferase domain APL_0940 PF04301 Protein of unknown function (DUF452) APL_0941 PF00155 Aminotransferase class I and II APL_0942 PF00202 Aminotransferase class-III APL_0943 PF05175 Methyltransferase small domain APL_0944 PF03449 Transcription elongation factor, N-terminal APL_0944 PF01272 Transcription elongation factor, GreA/GreB, C-term APL_0945 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APL_0950 PF06114 IrrE N-terminal-like domain APL_0951 PF01381 Helix-turn-helix APL_0955 PF00005 ABC transporter APL_0955 PF03412 Peptidase C39 family APL_0955 PF00664 ABC transporter transmembrane region APL_0956 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) APL_0956 PF02382 N-terminal domain in RTX protein APL_0956 PF08339 RTX C-terminal domain APL_0957 PF05127 Helicase APL_0957 PF17176 tRNA-binding domain APL_0957 PF13718 GNAT acetyltransferase 2 APL_0958 PF02142 MGS-like domain APL_0958 PF01808 AICARFT/IMPCHase bienzyme APL_0959 PF13018 Extended Signal Peptide of Type V secretion system APL_0959 PF13332 Hemagglutinin repeat APL_0959 PF04829 Pre-toxin domain with VENN motif APL_0959 PF05860 haemagglutination activity domain APL_0962 PF04453 LPS transport system D APL_0962 PF03968 OstA-like protein APL_0963 PF04055 Radical SAM superfamily APL_0963 PF06969 HemN C-terminal domain APL_0965 PF04220 Der GTPase activator (YihI) APL_0966 PF06826 Predicted Permease Membrane Region APL_0966 PF02080 TrkA-C domain APL_0967 PF03616 Sodium/glutamate symporter APL_0968 PF06062 Uncharacterised protein family (UPF0231) APL_0969 PF03710 Glutamate-ammonia ligase adenylyltransferase APL_0969 PF08335 GlnD PII-uridylyltransferase APL_0970 PF03795 YCII-related domain APL_0971 PF03061 Thioesterase superfamily APL_0972 PF04279 Intracellular septation protein A APL_0974 PF04217 Protein of unknown function, DUF412 APL_0975 PF01171 PP-loop family APL_0976 PF13726 Na+-H+ antiporter family APL_0976 PF03553 Na+/H+ antiporter family APL_0977 PF03372 Endonuclease/Exonuclease/phosphatase family APL_0978 PF03466 LysR substrate binding domain APL_0978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_0982 PF01197 Ribosomal protein L31 APL_0983 PF02779 Transketolase, pyrimidine binding domain APL_0983 PF02780 Transketolase, C-terminal domain APL_0983 PF00456 Transketolase, thiamine diphosphate binding domain APL_0985 PF13333 Integrase core domain APL_0985 PF00665 Integrase core domain APL_0985 PF13276 HTH-like domain APL_0986 PF13333 Integrase core domain APL_0986 PF00665 Integrase core domain APL_0987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APL_0987 PF00183 Hsp90 protein APL_0988 PF06628 Catalase-related immune-responsive APL_0988 PF00199 Catalase APL_0990 PF00665 Integrase core domain APL_0990 PF13333 Integrase core domain APL_0991 PF00149 Calcineurin-like phosphoesterase APL_0992 PF03477 ATP cone domain APL_0992 PF02867 Ribonucleotide reductase, barrel domain APL_0992 PF00317 Ribonucleotide reductase, all-alpha domain APL_0993 PF00268 Ribonucleotide reductase, small chain APL_0994 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain APL_0994 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain APL_0995 PF10509 Galactokinase galactose-binding signature APL_0995 PF08544 GHMP kinases C terminal APL_0995 PF00288 GHMP kinases N terminal domain APL_0996 PF01263 Aldose 1-epimerase APL_0997 PF02837 Glycosyl hydrolases family 2, sugar binding domain APL_0997 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APL_0997 PF00703 Glycosyl hydrolases family 2 APL_0997 PF16353 Domain of unknown function(DUF4981) APL_0997 PF02929 Beta galactosidase small chain APL_0998 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) APL_0998 PF06594 Haemolysin-type calcium binding protein related domain APL_1000 PF10609 NUBPL iron-transfer P-loop NTPase APL_1002 PF01914 MarC family integral membrane protein APL_1003 PF13145 PPIC-type PPIASE domain APL_1004 PF00999 Sodium/hydrogen exchanger family APL_1005 PF00312 Ribosomal protein S15 APL_1006 PF05661 Protein of unknown function (DUF808) APL_1007 PF07219 HemY protein N-terminus APL_1008 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase APL_1009 PF02602 Uroporphyrinogen-III synthase HemD APL_1010 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APL_1010 PF03900 Porphobilinogen deaminase, C-terminal domain APL_1011 PF00171 Aldehyde dehydrogenase family APL_1011 PF00465 Iron-containing alcohol dehydrogenase APL_1012 PF00118 TCP-1/cpn60 chaperonin family APL_1013 PF00166 Chaperonin 10 Kd subunit APL_1014 PF01048 Phosphorylase superfamily APL_1015 PF01791 DeoC/LacD family aldolase APL_1016 PF01773 Na+ dependent nucleoside transporter N-terminus APL_1016 PF07662 Na+ dependent nucleoside transporter C-terminus APL_1016 PF07670 Nucleoside recognition APL_1018 PF01081 KDPG and KHG aldolase APL_1019 PF00294 pfkB family carbohydrate kinase APL_1020 PF02614 Glucuronate isomerase APL_1021 PF17137 Domain of unknown function (DUF5110) APL_1021 PF13802 Galactose mutarotase-like APL_1021 PF01055 Glycosyl hydrolases family 31 APL_1021 PF16338 Domain of unknown function (DUF4968) APL_1022 PF00392 Bacterial regulatory proteins, gntR family APL_1022 PF07729 FCD domain APL_1024 PF01641 SelR domain APL_1024 PF01625 Peptide methionine sulfoxide reductase APL_1025 PF00535 Glycosyl transferase family 2 APL_1026 PF00535 Glycosyl transferase family 2 APL_1028 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) APL_1030 PF04230 Polysaccharide pyruvyl transferase APL_1031 PF02698 DUF218 domain APL_1032 PF18074 Primosomal protein N C-terminal domain APL_1032 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APL_1032 PF17764 3′ DNA-binding domain (3′BD) APL_1032 PF00270 DEAD/DEAH box helicase APL_1032 PF00271 Helicase conserved C-terminal domain APL_1033 PF01817 Chorismate mutase type II APL_1033 PF00800 Prephenate dehydratase APL_1034 PF01432 Peptidase family M3 APL_1035 PF04055 Radical SAM superfamily APL_1036 PF01228 Glycine radical APL_1036 PF02901 Pyruvate formate lyase-like APL_1037 PF01226 Formate/nitrite transporter APL_1039 PF01435 Peptidase family M48 APL_1040 PF00817 impB/mucB/samB family APL_1040 PF11799 impB/mucB/samB family C-terminal domain APL_1040 PF11798 IMS family HHH motif APL_1041 PF03956 Lysine exporter LysO APL_1042 PF00425 chorismate binding enzyme APL_1043 PF00155 Aminotransferase class I and II APL_1044 PF00892 EamA-like transporter family APL_1045 PF00892 EamA-like transporter family APL_1046 PF01810 LysE type translocator APL_1047 PF07715 TonB-dependent Receptor Plug Domain APL_1047 PF00593 TonB dependent receptor APL_1047 PF04886 PT repeat APL_1048 PF01243 Pyridoxamine 5'-phosphate oxidase APL_1051 PF08534 Redoxin APL_1052 PF01578 Cytochrome C assembly protein APL_1052 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APL_1053 PF00999 Sodium/hydrogen exchanger family APL_1053 PF02254 TrkA-N domain APL_1054 PF12633 Adenylate cyclase NT domain APL_1054 PF01295 Adenylate cyclase, class-I APL_1055 PF02801 Beta-ketoacyl synthase, C-terminal domain APL_1055 PF00109 Beta-ketoacyl synthase, N-terminal domain APL_1058 PF13276 HTH-like domain APL_1058 PF00665 Integrase core domain APL_1058 PF13333 Integrase core domain APL_1059 PF00665 Integrase core domain APL_1059 PF13333 Integrase core domain APL_1060 PF04076 Bacterial OB fold (BOF) protein APL_1063 PF00486 Transcriptional regulatory protein, C terminal APL_1063 PF00072 Response regulator receiver domain APL_1064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APL_1064 PF00512 His Kinase A (phospho-acceptor) domain APL_1064 PF08521 Two-component sensor kinase N-terminal APL_1065 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) APL_1066 PF02699 Preprotein translocase subunit APL_1067 PF07549 SecD/SecF GG Motif APL_1067 PF13721 SecD export protein N-terminal TM region APL_1067 PF02355 Protein export membrane protein APL_1068 PF02355 Protein export membrane protein APL_1068 PF07549 SecD/SecF GG Motif APL_1069 PF00210 Ferritin-like domain APL_1070 PF00210 Ferritin-like domain APL_1071 PF00860 Permease family APL_1072 PF02545 Maf-like protein APL_1074 PF02926 THUMP domain APL_1074 PF02568 Thiamine biosynthesis protein (ThiI) APL_1075 PF00709 Adenylosuccinate synthetase APL_1076 PF01145 SPFH domain / Band 7 family APL_1077 PF01145 SPFH domain / Band 7 family APL_1078 PF00085 Thioredoxin APL_1079 PF00860 Permease family APL_1080 PF00438 S-adenosylmethionine synthetase, N-terminal domain APL_1080 PF02773 S-adenosylmethionine synthetase, C-terminal domain APL_1080 PF02772 S-adenosylmethionine synthetase, central domain APL_1082 PF13520 Amino acid permease APL_1083 PF13520 Amino acid permease APL_1085 PF07687 Peptidase dimerisation domain APL_1085 PF01546 Peptidase family M20/M25/M40 APL_1086 PF03922 OmpW family APL_1087 PF02861 Clp amino terminal domain, pathogenicity island component APL_1087 PF07724 AAA domain (Cdc48 subfamily) APL_1087 PF00004 ATPase family associated with various cellular activities (AAA) APL_1087 PF17871 AAA lid domain APL_1087 PF10431 C-terminal, D2-small domain, of ClpB protein APL_1088 PF01758 Sodium Bile acid symporter family APL_1089 PF03960 ArsC family APL_1091 PF00206 Lyase APL_1091 PF10415 Fumarase C C-terminus APL_1095 PF02769 AIR synthase related protein, C-terminal domain APL_1095 PF00586 AIR synthase related protein, N-terminal domain APL_1096 PF00746 LPXTG cell wall anchor motif APL_1096 PF07501 G5 domain APL_1096 PF00728 Glycosyl hydrolase family 20, catalytic domain APL_1096 PF04650 YSIRK type signal peptide APL_1097 PF06508 Queuosine biosynthesis protein QueC APL_1098 PF01242 6-pyruvoyl tetrahydropterin synthase APL_1099 PF04055 Radical SAM superfamily APL_1101 PF02789 Cytosol aminopeptidase family, N-terminal domain APL_1101 PF00883 Cytosol aminopeptidase family, catalytic domain APL_1103 PF03739 Lipopolysaccharide export system permease LptF/LptG APL_1104 PF03739 Lipopolysaccharide export system permease LptF/LptG APL_1105 PF02811 PHP domain APL_1105 PF14579 Helix-hairpin-helix motif APL_1105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APL_1105 PF07733 Bacterial DNA polymerase III alpha NTPase domain APL_1105 PF01336 OB-fold nucleic acid binding domain APL_1106 PF01370 NAD dependent epimerase/dehydratase family APL_1106 PF02222 ATP-grasp domain APL_1107 PF01553 Acyltransferase APL_1108 PF01726 LexA DNA binding domain APL_1108 PF00717 Peptidase S24-like APL_1109 PF02976 DNA mismatch repair enzyme MutH APL_1110 PF03741 Integral membrane protein TerC family APL_1111 PF00933 Glycosyl hydrolase family 3 N terminal domain APL_1112 PF05958 tRNA (Uracil-5-)-methyltransferase APL_1113 PF03952 Enolase, N-terminal domain APL_1113 PF00113 Enolase, C-terminal TIM barrel domain APL_1114 PF00293 NUDIX domain APL_1115 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) APL_1116 PF09382 RQC domain APL_1116 PF16124 RecQ zinc-binding APL_1116 PF00570 HRDC domain APL_1116 PF00270 DEAD/DEAH box helicase APL_1116 PF00271 Helicase conserved C-terminal domain APL_1117 PF01491 Frataxin-like domain APL_1120 PF00814 Glycoprotease family APL_1121 PF13525 Outer membrane lipoprotein APL_1122 PF00849 RNA pseudouridylate synthase APL_1122 PF01479 S4 domain APL_1123 PF14256 YwiC-like protein APL_1124 PF00365 Phosphofructokinase APL_1125 PF00266 Aminotransferase class-V APL_1126 PF00565 Staphylococcal nuclease homologue APL_1127 PF01235 Sodium:alanine symporter family APL_1128 PF01594 AI-2E family transporter APL_1131 PF04932 O-Antigen ligase APL_1132 PF00534 Glycosyl transferases group 1 APL_1132 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APL_1133 PF01467 Cytidylyltransferase-like APL_1134 PF00929 Exonuclease APL_1135 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APL_1136 PF01520 N-acetylmuramoyl-L-alanine amidase APL_1136 PF01476 LysM domain APL_1137 PF00342 Phosphoglucose isomerase APL_1138 PF04380 Membrane fusogenic activity APL_1139 PF08501 Shikimate dehydrogenase substrate binding domain APL_1139 PF01488 Shikimate / quinate 5-dehydrogenase APL_1139 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APL_1140 PF01300 Telomere recombination APL_1142 PF02631 RecX family APL_1143 PF00154 recA bacterial DNA recombination protein APL_1144 PF01063 Amino-transferase class IV APL_1145 PF00425 chorismate binding enzyme APL_1146 PF02646 RmuC family APL_1146 PF02646 RmuC family APL_1147 PF00117 Glutamine amidotransferase class-I APL_1148 PF03625 Domain of unknown function DUF302 APL_1148 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APL_1149 PF00152 tRNA synthetases class II (D, K and N) APL_1149 PF01336 OB-fold nucleic acid binding domain APL_1149 PF02938 GAD domain APL_1150 PF00293 NUDIX domain APL_1151 PF01709 Transcriptional regulator APL_1153 PF02075 Crossover junction endodeoxyribonuclease RuvC APL_1154 PF00675 Insulinase (Peptidase family M16) APL_1154 PF05193 Peptidase M16 inactive domain APL_1155 PF08267 Cobalamin-independent synthase, N-terminal domain APL_1155 PF01717 Cobalamin-independent synthase, Catalytic domain APL_1158 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_1158 PF03466 LysR substrate binding domain APL_1159 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B APL_1160 PF00849 RNA pseudouridylate synthase APL_1160 PF01479 S4 domain APL_1161 PF01300 Telomere recombination APL_1162 PF04261 Dyp-type peroxidase family APL_1163 PF04715 Anthranilate synthase component I, N terminal region APL_1163 PF00425 chorismate binding enzyme APL_1164 PF00117 Glutamine amidotransferase class-I APL_1165 PF00591 Glycosyl transferase family, a/b domain APL_1165 PF02885 Glycosyl transferase family, helical bundle domain APL_1166 PF08241 Methyltransferase domain APL_1167 PF16036 Chalcone isomerase-like APL_1168 PF04325 Protein of unknown function (DUF465) APL_1169 PF01281 Ribosomal protein L9, N-terminal domain APL_1169 PF03948 Ribosomal protein L9, C-terminal domain APL_1170 PF00436 Single-strand binding protein family APL_1171 PF01250 Ribosomal protein S6 APL_1172 PF02843 Phosphoribosylglycinamide synthetase, C domain APL_1172 PF02844 Phosphoribosylglycinamide synthetase, N domain APL_1172 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APL_1173 PF04973 Nicotinamide mononucleotide transporter APL_1174 PF09976 Tetratricopeptide repeat-like domain APL_1175 PF03129 Anticodon binding domain APL_1175 PF13393 Histidyl-tRNA synthetase APL_1176 PF04551 GcpE protein APL_1177 PF13464 Domain of unknown function (DUF4115) APL_1178 PF00916 Sulfate permease family APL_1178 PF01740 STAS domain APL_1179 PF00206 Lyase APL_1179 PF14698 Argininosuccinate lyase C-terminal APL_1180 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APL_1180 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APL_1181 PF02254 TrkA-N domain APL_1181 PF00999 Sodium/hydrogen exchanger family APL_1182 PF13173 AAA domain APL_1182 PF13635 Domain of unknown function (DUF4143) APL_1186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_1186 PF03466 LysR substrate binding domain APL_1189 PF10114 Sensory domain found in PocR APL_1189 PF12833 Helix-turn-helix domain APL_1190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_1190 PF03466 LysR substrate binding domain APL_1191 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APL_1192 PF00296 Luciferase-like monooxygenase APL_1196 PF18766 SWI2/SNF2 ATPase APL_1196 PF11867 Domain of unknown function (DUF3387) APL_1196 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APL_1197 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APL_1197 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APL_1198 PF00881 Nitroreductase family APL_1199 PF01914 MarC family integral membrane protein APL_1200 PF03852 DNA mismatch endonuclease Vsr APL_1202 PF00145 C-5 cytosine-specific DNA methylase APL_1204 PF00756 Putative esterase APL_1205 PF02798 Glutathione S-transferase, N-terminal domain APL_1208 PF00107 Zinc-binding dehydrogenase APL_1208 PF08240 Alcohol dehydrogenase GroES-like domain APL_1209 PF02028 BCCT, betaine/carnitine/choline family transporter APL_1212 PF03595 Voltage-dependent anion channel APL_1213 PF13419 Haloacid dehalogenase-like hydrolase APL_1215 PF00005 ABC transporter APL_1215 PF00664 ABC transporter transmembrane region APL_1216 PF02664 S-Ribosylhomocysteinase (LuxS) APL_1217 PF02470 MlaD protein APL_1218 PF01475 Ferric uptake regulator family APL_1219 PF00258 Flavodoxin APL_1220 PF01402 Ribbon-helix-helix protein, copG family APL_1221 PF04073 Aminoacyl-tRNA editing domain APL_1223 PF00860 Permease family APL_1224 PF02635 DsrE/DsrF-like family APL_1228 PF01176 Translation initiation factor 1A / IF-1 APL_1229 PF10144 Bacterial virulence factor haemolysin APL_1230 PF18429 Domain of unknown function (DUF5609) APL_1231 PF04461 Protein of unknown function (DUF520) APL_1232 PF00343 Carbohydrate phosphorylase APL_1233 PF00196 Bacterial regulatory proteins, luxR family APL_1233 PF17874 MalT-like TPR region APL_1234 PF07148 Maltose operon periplasmic protein precursor (MalM) APL_1235 PF02264 LamB porin APL_1236 PF17912 MalK OB fold domain APL_1236 PF00005 ABC transporter APL_1237 PF01547 Bacterial extracellular solute-binding protein APL_1238 PF00528 Binding-protein-dependent transport system inner membrane component APL_1238 PF14785 Maltose transport system permease protein MalF P2 domain APL_1239 PF00528 Binding-protein-dependent transport system inner membrane component APL_1240 PF02446 4-alpha-glucanotransferase APL_1241 PF02554 Carbon starvation protein CstA APL_1242 PF01026 TatD related DNase APL_1243 PF07992 Pyridine nucleotide-disulphide oxidoreductase APL_1243 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APL_1245 PF03350 Uncharacterized protein family, UPF0114 APL_1246 PF00881 Nitroreductase family APL_1249 PF00005 ABC transporter APL_1250 PF01116 Fructose-bisphosphate aldolase class-II APL_1251 PF00162 Phosphoglycerate kinase APL_1252 PF00939 Sodium:sulfate symporter transmembrane region APL_1253 PF00939 Sodium:sulfate symporter transmembrane region APL_1254 PF00939 Sodium:sulfate symporter transmembrane region APL_1255 PF00204 DNA gyrase B APL_1255 PF00986 DNA gyrase B subunit, carboxyl terminus APL_1255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APL_1255 PF01751 Toprim domain APL_1256 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APL_1256 PF00512 His Kinase A (phospho-acceptor) domain APL_1257 PF00072 Response regulator receiver domain APL_1257 PF00486 Transcriptional regulatory protein, C terminal APL_1258 PF00005 ABC transporter APL_1259 PF00528 Binding-protein-dependent transport system inner membrane component APL_1260 PF00528 Binding-protein-dependent transport system inner membrane component APL_1261 PF12849 PBP superfamily domain APL_1262 PF00376 MerR family regulatory protein APL_1262 PF09278 MerR, DNA binding APL_1264 PF00403 Heavy-metal-associated domain APL_1265 PF00403 Heavy-metal-associated domain APL_1266 PF00106 short chain dehydrogenase APL_1267 PF00881 Nitroreductase family APL_1268 PF01343 Peptidase family S49 APL_1269 PF00445 Ribonuclease T2 family APL_1270 PF10263 SprT-like family APL_1270 PF17283 SprT-like zinc ribbon domain APL_1271 PF07992 Pyridine nucleotide-disulphide oxidoreductase APL_1272 PF17674 HHH domain APL_1272 PF00575 S1 RNA binding domain APL_1272 PF09371 Tex-like protein N-terminal domain APL_1272 PF16921 Tex protein YqgF-like domain APL_1274 PF04055 Radical SAM superfamily APL_1275 PF00749 tRNA synthetases class I (E and Q), catalytic domain APL_1276 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system APL_1277 PF03966 Trm112p-like protein APL_1278 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APL_1279 PF07724 AAA domain (Cdc48 subfamily) APL_1279 PF10431 C-terminal, D2-small domain, of ClpB protein APL_1279 PF06689 ClpX C4-type zinc finger APL_1280 PF00574 Clp protease APL_1281 PF02657 Fe-S metabolism associated domain APL_1282 PF00929 Exonuclease APL_1283 PF00005 ABC transporter APL_1283 PF12848 ABC transporter APL_1284 PF02627 Carboxymuconolactone decarboxylase family APL_1286 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APL_1287 PF01722 BolA-like protein APL_1289 PF05494 MlaC protein APL_1290 PF02470 MlaD protein APL_1291 PF02405 Permease MlaE APL_1292 PF00005 ABC transporter APL_1293 PF00595 PDZ domain APL_1294 PF01370 NAD dependent epimerase/dehydratase family APL_1294 PF08338 Domain of unknown function (DUF1731) APL_1295 PF01316 Arginine repressor, DNA binding domain APL_1295 PF02863 Arginine repressor, C-terminal domain APL_1296 PF00056 lactate/malate dehydrogenase, NAD binding domain APL_1296 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APL_1298 PF05191 Adenylate kinase, active site lid APL_1300 PF07690 Major Facilitator Superfamily APL_1301 PF01370 NAD dependent epimerase/dehydratase family APL_1302 PF12826 Helix-hairpin-helix motif APL_1302 PF00533 BRCA1 C Terminus (BRCT) domain APL_1302 PF01653 NAD-dependent DNA ligase adenylation domain APL_1302 PF03120 NAD-dependent DNA ligase OB-fold domain APL_1302 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APL_1303 PF04354 ZipA, C-terminal FtsZ-binding domain APL_1305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APL_1305 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APL_1309 PF07690 Major Facilitator Superfamily APL_1310 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APL_1311 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APL_1311 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APL_1312 PF00459 Inositol monophosphatase family APL_1313 PF00293 NUDIX domain APL_1314 PF01479 S4 domain APL_1315 PF01430 Hsp33 protein APL_1316 PF03605 Anaerobic c4-dicarboxylate membrane transporter APL_1317 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APL_1317 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APL_1318 PF00696 Amino acid kinase family APL_1319 PF02378 Phosphotransferase system, EIIC APL_1319 PF00367 phosphotransferase system, EIIB APL_1320 PF00005 ABC transporter APL_1321 PF00528 Binding-protein-dependent transport system inner membrane component APL_1322 PF00381 PTS HPr component phosphorylation site APL_1323 PF05524 PEP-utilising enzyme, N-terminal APL_1323 PF00391 PEP-utilising enzyme, mobile domain APL_1323 PF02896 PEP-utilising enzyme, TIM barrel domain APL_1324 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APL_1325 PF00919 Uncharacterized protein family UPF0004 APL_1325 PF04055 Radical SAM superfamily APL_1325 PF01938 TRAM domain APL_1326 PF13361 UvrD-like helicase C-terminal domain APL_1326 PF00580 UvrD/REP helicase N-terminal domain APL_1327 PF02492 CobW/HypB/UreG, nucleotide-binding domain APL_1328 PF01924 Hydrogenase formation hypA family APL_1329 PF00586 AIR synthase related protein, N-terminal domain APL_1329 PF02769 AIR synthase related protein, C-terminal domain APL_1330 PF17788 HypF Kae1-like domain APL_1330 PF01300 Telomere recombination APL_1330 PF00708 Acylphosphatase APL_1330 PF07503 HypF finger APL_1331 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APL_1331 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal APL_1332 PF13247 4Fe-4S dicluster domain APL_1333 PF03916 Polysulphide reductase, NrfD APL_1334 PF00374 Nickel-dependent hydrogenase APL_1335 PF01750 Hydrogenase maturation protease APL_1336 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE APL_1337 PF01455 HupF/HypC family APL_1338 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA APL_1339 PF02559 CarD-like/TRCF domain APL_1339 PF00270 DEAD/DEAH box helicase APL_1339 PF00271 Helicase conserved C-terminal domain APL_1339 PF03461 TRCF domain APL_1339 PF17757 UvrB interaction domain APL_1340 PF01433 Peptidase family M1 domain APL_1340 PF17432 Domain of unknown function (DUF3458_C) ARM repeats APL_1340 PF11940 Domain of unknown function (DUF3458) Ig-like fold APL_1341 PF02660 Glycerol-3-phosphate acyltransferase APL_1342 PF02152 Dihydroneopterin aldolase APL_1343 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region APL_1343 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APL_1344 PF18075 FtsX extracellular domain APL_1345 PF00005 ABC transporter APL_1346 PF02881 SRP54-type protein, helical bundle domain APL_1346 PF00448 SRP54-type protein, GTPase domain APL_1348 PF04269 Protein of unknown function, DUF440 APL_1349 PF01613 Flavin reductase like domain APL_1350 PF03848 Tellurite resistance protein TehB APL_1350 PF09313 Domain of unknown function (DUF1971) APL_1351 PF00528 Binding-protein-dependent transport system inner membrane component APL_1352 PF00528 Binding-protein-dependent transport system inner membrane component APL_1353 PF00497 Bacterial extracellular solute-binding proteins, family 3 APL_1354 PF00005 ABC transporter APL_1355 PF01161 Phosphatidylethanolamine-binding protein APL_1356 PF01699 Sodium/calcium exchanger protein APL_1357 PF01381 Helix-turn-helix APL_1359 PF02683 Cytochrome C biogenesis protein transmembrane region APL_1359 PF13098 Thioredoxin-like domain APL_1359 PF11412 Disulphide bond corrector protein DsbC APL_1360 PF04315 Elongation factor P hydroxylase APL_1361 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APL_1362 PF04348 LppC putative lipoprotein APL_1363 PF02021 Uncharacterised protein family UPF0102 APL_1364 PF13580 SIS domain APL_1365 PF04972 BON domain APL_1366 PF01464 Transglycosylase SLT domain APL_1366 PF00497 Bacterial extracellular solute-binding proteins, family 3 APL_1367 PF01578 Cytochrome C assembly protein APL_1367 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APL_1368 PF03100 CcmE APL_1369 PF04995 Heme exporter protein D (CcmD) APL_1370 PF01578 Cytochrome C assembly protein APL_1371 PF03379 CcmB protein APL_1372 PF00005 ABC transporter APL_1373 PF00308 Bacterial dnaA protein APL_1375 PF04277 Oxaloacetate decarboxylase, gamma chain APL_1376 PF00364 Biotin-requiring enzyme APL_1376 PF02436 Conserved carboxylase domain APL_1376 PF00682 HMGL-like APL_1377 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit APL_1378 PF08274 PhnA Zinc-Ribbon APL_1378 PF03831 PhnA domain APL_1379 PF03150 Di-haem cytochrome c peroxidase APL_1379 PF14376 Haem-binding domain APL_1379 PF00034 Cytochrome c APL_1380 PF02594 Uncharacterised ACR, YggU family COG1872 APL_1381 PF02325 YGGT family APL_1382 PF04320 Protein with unknown function (DUF469) APL_1383 PF02390 Putative methyltransferase APL_1384 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APL_1384 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APL_1385 PF02504 Fatty acid synthesis protein APL_1386 PF01783 Ribosomal L32p protein family APL_1387 PF02620 Large ribosomal RNA subunit accumulation protein YceD APL_1388 PF01578 Cytochrome C assembly protein APL_1389 PF01595 Cyclin M transmembrane N-terminal domain APL_1389 PF03471 Transporter associated domain APL_1389 PF00571 CBS domain APL_1390 PF00209 Sodium:neurotransmitter symporter family APL_1391 PF03830 PTS system sorbose subfamily IIB component APL_1391 PF03610 PTS system fructose IIA component APL_1392 PF03609 PTS system sorbose-specific iic component APL_1393 PF03613 PTS system mannose/fructose/sorbose family IID component APL_1394 PF06173 Protein of unknown function (DUF986) APL_1395 PF01238 Phosphomannose isomerase type I APL_1398 PF00009 Elongation factor Tu GTP binding domain APL_1398 PF03144 Elongation factor Tu domain 2 APL_1398 PF03143 Elongation factor Tu C-terminal domain APL_1399 PF03144 Elongation factor Tu domain 2 APL_1399 PF00679 Elongation factor G C-terminus APL_1399 PF00009 Elongation factor Tu GTP binding domain APL_1399 PF03764 Elongation factor G, domain IV APL_1399 PF14492 Elongation Factor G, domain II APL_1400 PF00177 Ribosomal protein S7p/S5e APL_1401 PF00164 Ribosomal protein S12/S23 APL_1402 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APL_1403 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APL_1405 PF08525 Opacity-associated protein A N-terminal motif APL_1405 PF04225 Opacity-associated protein A LysM-like domain APL_1407 PF02666 Phosphatidylserine decarboxylase APL_1408 PF02655 ATP-grasp domain APL_1408 PF04262 Glutamate-cysteine ligase APL_1408 PF18419 ATP-grasp-like domain APL_1410 PF03222 Tryptophan/tyrosine permease family APL_1411 PF04175 Protein of unknown function (DUF406) APL_1412 PF00248 Aldo/keto reductase family APL_1413 PF00501 AMP-binding enzyme APL_1414 PF06039 Malate:quinone oxidoreductase (Mqo) APL_1418 PF02653 Branched-chain amino acid transport system / permease component APL_1419 PF00005 ABC transporter APL_1420 PF13407 Periplasmic binding protein domain APL_1421 PF01389 OmpA-like transmembrane domain APL_1421 PF00691 OmpA family APL_1422 PF02913 FAD linked oxidases, C-terminal domain APL_1422 PF01565 FAD binding domain APL_1422 PF13183 4Fe-4S dicluster domain APL_1423 PF03061 Thioesterase superfamily APL_1424 PF02096 60Kd inner membrane protein APL_1424 PF14849 YidC periplasmic domain APL_1425 PF03264 NapC/NirT cytochrome c family, N-terminal region APL_1426 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) APL_1427 PF12837 4Fe-4S binding domain APL_1427 PF12801 4Fe-4S binding domain APL_1428 PF12838 4Fe-4S dicluster domain APL_1428 PF12800 4Fe-4S binding domain APL_1429 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APL_1429 PF00384 Molybdopterin oxidoreductase APL_1429 PF01568 Molydopterin dinucleotide binding domain APL_1429 PF10518 TAT (twin-arginine translocation) pathway signal sequence APL_1431 PF12838 4Fe-4S dicluster domain APL_1431 PF13187 4Fe-4S dicluster domain APL_1432 PF02525 Flavodoxin-like fold APL_1433 PF00665 Integrase core domain APL_1433 PF13333 Integrase core domain APL_1436 PF00575 S1 RNA binding domain APL_1436 PF10150 Ribonuclease E/G family APL_1436 PF12111 Polyribonucleotide phosphorylase C terminal APL_1438 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family APL_1439 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APL_1440 PF01297 Zinc-uptake complex component A periplasmic APL_1443 PF00005 ABC transporter APL_1443 PF00664 ABC transporter transmembrane region APL_1443 PF03412 Peptidase C39 family APL_1444 PF08339 RTX C-terminal domain APL_1444 PF02382 N-terminal domain in RTX protein APL_1444 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) APL_1445 PF02794 RTX toxin acyltransferase family APL_1447 PF00528 Binding-protein-dependent transport system inner membrane component APL_1448 PF00005 ABC transporter APL_1448 PF08402 TOBE domain APL_1449 PF08245 Mur ligase middle domain APL_1449 PF02875 Mur ligase family, glutamate ligase domain APL_1449 PF01225 Mur ligase family, catalytic domain APL_1450 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APL_1452 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APL_1452 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APL_1453 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APL_1454 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APL_1454 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APL_1454 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APL_1454 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APL_1455 PF00291 Pyridoxal-phosphate dependent enzyme APL_1455 PF00585 C-terminal regulatory domain of Threonine dehydratase APL_1456 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APL_1457 PF00230 Major intrinsic protein APL_1459 PF01980 tRNA-methyltransferase O APL_1459 PF18389 TrmO C-terminal domain APL_1460 PF17761 DUF1016 N-terminal domain APL_1460 PF06250 YhcG PDDEXK nuclease domain APL_1461 PF01040 UbiA prenyltransferase family APL_1462 PF01521 Iron-sulphur cluster biosynthesis APL_1463 PF01061 ABC-2 type transporter APL_1464 PF00005 ABC transporter APL_1467 PF03275 UDP-galactopyranose mutase APL_1469 PF00535 Glycosyl transferase family 2 APL_1469 PF00795 Carbon-nitrogen hydrolase APL_1471 PF02397 Bacterial sugar transferase APL_1472 PF16363 GDP-mannose 4,6 dehydratase APL_1473 PF01165 Ribosomal protein S21 APL_1474 PF01807 CHC2 zinc finger APL_1474 PF08278 DNA primase DnaG DnaB-binding APL_1474 PF10410 DnaB-helicase binding domain of primase APL_1474 PF08275 DNA primase catalytic core, N-terminal domain APL_1475 PF00140 Sigma-70 factor, region 1.2 APL_1475 PF04539 Sigma-70 region 3 APL_1475 PF04546 Sigma-70, non-essential region APL_1475 PF04542 Sigma-70 region 2 APL_1475 PF04545 Sigma-70, region 4 APL_1475 PF03979 Sigma-70 factor, region 1.1 APL_1476 PF00579 tRNA synthetases class I (W and Y) APL_1476 PF01479 S4 domain APL_1478 PF08206 Ribonuclease B OB domain APL_1478 PF17876 Cold shock domain APL_1478 PF00773 RNB domain APL_1478 PF00575 S1 RNA binding domain APL_1478 PF08461 Ribonuclease R winged-helix domain APL_1479 PF00578 AhpC/TSA family APL_1480 PF00440 Bacterial regulatory proteins, tetR family APL_1481 PF03466 LysR substrate binding domain APL_1481 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_1482 PF08534 Redoxin APL_1482 PF00462 Glutaredoxin APL_1485 PF08543 Phosphomethylpyrimidine kinase APL_1486 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APL_1487 PF07731 Multicopper oxidase APL_1487 PF07732 Multicopper oxidase APL_1488 PF01553 Acyltransferase APL_1489 PF08534 Redoxin APL_1490 PF01926 50S ribosome-binding GTPase APL_1490 PF12631 MnmE helical domain APL_1490 PF10396 GTP-binding protein TrmE N-terminus APL_1491 PF05167 Uncharacterised ACR (DUF711) APL_1493 PF02678 Pirin APL_1493 PF17954 Quercetinase C-terminal cupin domain APL_1494 PF00210 Ferritin-like domain APL_1497 PF12805 FUSC-like inner membrane protein yccS APL_1498 PF02142 MGS-like domain APL_1499 PF00291 Pyridoxal-phosphate dependent enzyme APL_1499 PF14821 Threonine synthase N terminus APL_1501 PF00665 Integrase core domain APL_1501 PF13333 Integrase core domain APL_1502 PF08264 Anticodon-binding domain of tRNA APL_1502 PF00133 tRNA synthetases class I (I, L, M and V) APL_1502 PF10458 Valyl tRNA synthetase tRNA binding arm APL_1504 PF13673 Acetyltransferase (GNAT) domain APL_1505 PF04364 DNA polymerase III chi subunit, HolC APL_1506 PF01476 LysM domain APL_1507 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APL_1507 PF05697 Bacterial trigger factor protein (TF) APL_1507 PF05698 Bacterial trigger factor protein (TF) C-terminus APL_1508 PF00581 Rhodanese-like domain APL_1509 PF02556 Preprotein translocase subunit SecB APL_1510 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APL_1510 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APL_1511 PF06426 Serine acetyltransferase, N-terminal APL_1511 PF00132 Bacterial transferase hexapeptide (six repeats) APL_1512 PF03143 Elongation factor Tu C-terminal domain APL_1512 PF03144 Elongation factor Tu domain 2 APL_1512 PF00009 Elongation factor Tu GTP binding domain APL_1513 PF00485 Phosphoribulokinase / Uridine kinase family APL_1514 PF08534 Redoxin APL_1515 PF03918 Cytochrome C biogenesis protein APL_1516 PF03918 Cytochrome C biogenesis protein APL_1517 PF00994 Probable molybdopterin binding domain APL_1518 PF00543 Nitrogen regulatory protein P-II APL_1519 PF01252 Signal peptidase (SPase) II APL_1520 PF02401 LytB protein APL_1521 PF03937 Flavinator of succinate dehydrogenase APL_1523 PF04055 Radical SAM superfamily APL_1524 PF00043 Glutathione S-transferase, C-terminal domain APL_1524 PF02798 Glutathione S-transferase, N-terminal domain APL_1525 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APL_1525 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APL_1526 PF02313 Fumarate reductase subunit D APL_1527 PF02300 Fumarate reductase subunit C APL_1528 PF13085 2Fe-2S iron-sulfur cluster binding domain APL_1528 PF13183 4Fe-4S dicluster domain APL_1529 PF02910 Fumarate reductase flavoprotein C-term APL_1529 PF00890 FAD binding domain APL_1530 PF00152 tRNA synthetases class II (D, K and N) APL_1531 PF01678 Diaminopimelate epimerase APL_1532 PF03605 Anaerobic c4-dicarboxylate membrane transporter APL_1533 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APL_1535 PF03702 Anhydro-N-acetylmuramic acid kinase APL_1536 PF01380 SIS domain APL_1540 PF01523 Putative modulator of DNA gyrase APL_1541 PF09179 TilS substrate binding domain APL_1541 PF01171 PP-loop family APL_1541 PF11734 TilS substrate C-terminal domain APL_1542 PF00589 Phage integrase family APL_1542 PF02899 Phage integrase, N-terminal SAM-like domain APL_1543 PF03808 Glycosyl transferase WecB/TagA/CpsF family APL_1544 PF06899 WzyE protein, O-antigen assembly polymerase APL_1545 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 APL_1546 PF03063 Prismane/CO dehydrogenase family APL_1547 PF00970 Oxidoreductase FAD-binding domain APL_1547 PF00175 Oxidoreductase NAD-binding domain APL_1547 PF00111 2Fe-2S iron-sulfur cluster binding domain APL_1548 PF01943 Polysaccharide biosynthesis protein APL_1549 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APL_1551 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APL_1551 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APL_1551 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APL_1552 PF02350 UDP-N-acetylglucosamine 2-epimerase APL_1554 PF00953 Glycosyl transferase family 4 APL_1555 PF00202 Aminotransferase class-III APL_1557 PF03023 Lipid II flippase MurJ APL_1558 PF01649 Ribosomal protein S20 APL_1559 PF02080 TrkA-C domain APL_1559 PF02254 TrkA-N domain APL_1560 PF01029 NusB family APL_1560 PF01189 16S rRNA methyltransferase RsmB/F APL_1561 PF00009 Elongation factor Tu GTP binding domain APL_1561 PF09107 Elongation factor SelB, winged helix APL_1561 PF03144 Elongation factor Tu domain 2 APL_1561 PF09106 Elongation factor SelB, winged helix APL_1562 PF03841 L-seryl-tRNA selenium transferase APL_1563 PF00258 Flavodoxin APL_1564 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APL_1564 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APL_1567 PF00593 TonB dependent receptor APL_1567 PF07715 TonB-dependent Receptor Plug Domain APL_1569 PF02472 Biopolymer transport protein ExbD/TolR APL_1570 PF01618 MotA/TolQ/ExbB proton channel family APL_1572 PF03956 Lysine exporter LysO APL_1573 PF02615 Malate/L-lactate dehydrogenase APL_1574 PF06821 Serine hydrolase APL_1575 PF17311 Family of unknown function (DUF5358) APL_1576 PF01380 SIS domain APL_1576 PF00571 CBS domain APL_1577 PF02348 Cytidylyltransferase APL_1578 PF00793 DAHP synthetase I family APL_1582 PF02563 Polysaccharide biosynthesis/export protein APL_1584 PF01061 ABC-2 type transporter APL_1585 PF00005 ABC transporter APL_1586 PF00005 ABC transporter APL_1587 PF00551 Formyl transferase APL_1587 PF02911 Formyl transferase, C-terminal domain APL_1589 PF09186 Domain of unknown function (DUF1949) APL_1589 PF01205 Uncharacterized protein family UPF0029 APL_1590 PF02386 Cation transport protein APL_1591 PF12724 Flavodoxin domain APL_1592 PF01741 Large-conductance mechanosensitive channel, MscL APL_1593 PF04055 Radical SAM superfamily APL_1594 PF03099 Biotin/lipoate A/B protein ligase family APL_1595 PF04359 Protein of unknown function (DUF493) APL_1596 PF00768 D-alanyl-D-alanine carboxypeptidase APL_1596 PF07943 Penicillin-binding protein 5, C-terminal domain APL_1597 PF03330 Lytic transglycolase APL_1598 PF01098 Cell cycle protein APL_1599 PF00905 Penicillin binding protein transpeptidase domain APL_1599 PF03717 Penicillin-binding Protein dimerisation domain APL_1600 PF02590 Predicted SPOUT methyltransferase APL_1602 PF05192 MutS domain III APL_1602 PF00488 MutS domain V APL_1602 PF05190 MutS family domain IV APL_1602 PF05188 MutS domain II APL_1602 PF01624 MutS domain I APL_1603 PF00005 ABC transporter APL_1604 PF00528 Binding-protein-dependent transport system inner membrane component APL_1605 PF03313 Serine dehydratase alpha chain APL_1606 PF04405 Domain of Unknown function (DUF542) APL_1606 PF01814 Hemerythrin HHE cation binding domain APL_1607 PF00893 Small Multidrug Resistance protein APL_1608 PF04175 Protein of unknown function (DUF406) APL_1611 PF01774 UreD urease accessory protein APL_1612 PF02492 CobW/HypB/UreG, nucleotide-binding domain APL_1613 PF01730 UreF APL_1614 PF02814 UreE urease accessory protein, N-terminal domain APL_1614 PF05194 UreE urease accessory protein, C-terminal domain APL_1616 PF01979 Amidohydrolase family APL_1616 PF00449 Urease alpha-subunit, N-terminal domain APL_1617 PF00699 Urease beta subunit APL_1618 PF00547 Urease, gamma subunit APL_1620 PF00005 ABC transporter APL_1622 PF01891 Cobalt uptake substrate-specific transmembrane region APL_1624 PF10670 Domain of unknown function (DUF4198) APL_1627 PF02080 TrkA-C domain APL_1627 PF03600 Citrate transporter APL_1628 PF05068 Mannitol repressor APL_1629 PF01232 Mannitol dehydrogenase Rossmann domain APL_1629 PF08125 Mannitol dehydrogenase C-terminal domain APL_1630 PF02378 Phosphotransferase system, EIIC APL_1630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APL_1630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APL_1631 PF01380 SIS domain APL_1632 PF00455 DeoR C terminal sensor domain APL_1632 PF08220 DeoR-like helix-turn-helix domain APL_1635 PF18254 HMW1 domain 2 APL_1635 PF18071 HMW1C N-terminal APL_1636 PF00919 Uncharacterized protein family UPF0004 APL_1636 PF04055 Radical SAM superfamily APL_1636 PF18693 TRAM domain APL_1637 PF01048 Phosphorylase superfamily APL_1639 PF04102 SlyX APL_1640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APL_1640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APL_1641 PF13309 HTH domain APL_1641 PF08348 YheO-like PAS domain APL_1642 PF02635 DsrE/DsrF-like family APL_1643 PF02635 DsrE/DsrF-like family APL_1644 PF04077 DsrH like protein APL_1645 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APL_1646 PF02874 ATP synthase alpha/beta family, beta-barrel domain APL_1646 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APL_1647 PF00231 ATP synthase APL_1648 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APL_1648 PF00306 ATP synthase alpha/beta chain, C terminal domain APL_1648 PF02874 ATP synthase alpha/beta family, beta-barrel domain APL_1649 PF00213 ATP synthase delta (OSCP) subunit APL_1650 PF00430 ATP synthase B/B' CF(0) APL_1651 PF00137 ATP synthase subunit C APL_1652 PF00119 ATP synthase A chain APL_1654 PF02527 rRNA small subunit methyltransferase G APL_1655 PF01134 Glucose inhibited division protein A APL_1655 PF13932 GidA associated domain APL_1657 PF00497 Bacterial extracellular solute-binding proteins, family 3 APL_1658 PF02810 SEC-C motif APL_1660 PF03613 PTS system mannose/fructose/sorbose family IID component APL_1661 PF03609 PTS system sorbose-specific iic component APL_1662 PF03830 PTS system sorbose subfamily IIB component APL_1662 PF03610 PTS system fructose IIA component APL_1663 PF00665 Integrase core domain APL_1663 PF13333 Integrase core domain APL_1665 PF02447 GntP family permease APL_1666 PF01202 Shikimate kinase APL_1667 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APL_1667 PF00356 Bacterial regulatory proteins, lacI family APL_1668 PF00356 Bacterial regulatory proteins, lacI family APL_1669 PF05025 RbsD / FucU transport protein family APL_1670 PF00005 ABC transporter APL_1671 PF02653 Branched-chain amino acid transport system / permease component APL_1672 PF13407 Periplasmic binding protein domain APL_1673 PF00294 pfkB family carbohydrate kinase APL_1674 PF01568 Molydopterin dinucleotide binding domain APL_1674 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APL_1674 PF00384 Molybdopterin oxidoreductase APL_1675 PF12800 4Fe-4S binding domain APL_1675 PF13247 4Fe-4S dicluster domain APL_1676 PF04976 DMSO reductase anchor subunit (DmsC) APL_1677 PF02613 Nitrate reductase delta subunit APL_1678 PF00037 4Fe-4S binding domain APL_1678 PF12838 4Fe-4S dicluster domain APL_1682 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APL_1682 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APL_1682 PF02769 AIR synthase related protein, C-terminal domain APL_1683 PF08220 DeoR-like helix-turn-helix domain APL_1683 PF00455 DeoR C terminal sensor domain APL_1684 PF07882 L-fucose isomerase, second N-terminal domain APL_1684 PF07881 L-fucose isomerase, first N-terminal domain APL_1684 PF02952 L-fucose isomerase, C-terminal domain APL_1685 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APL_1685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APL_1686 PF05025 RbsD / FucU transport protein family APL_1687 PF00596 Class II Aldolase and Adducin N-terminal domain APL_1688 PF07690 Major Facilitator Superfamily APL_1689 PF00465 Iron-containing alcohol dehydrogenase APL_1690 PF07274 Protein of unknown function (DUF1440) APL_1692 PF00528 Binding-protein-dependent transport system inner membrane component APL_1693 PF00005 ABC transporter APL_1694 PF00497 Bacterial extracellular solute-binding proteins, family 3 APL_1695 PF05159 Capsule polysaccharide biosynthesis protein APL_1696 PF05159 Capsule polysaccharide biosynthesis protein APL_1698 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APL_1699 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APL_1700 PF03611 PTS system sugar-specific permease component APL_1702 PF08220 DeoR-like helix-turn-helix domain APL_1702 PF00455 DeoR C terminal sensor domain APL_1703 PF01261 Xylose isomerase-like TIM barrel APL_1704 PF00596 Class II Aldolase and Adducin N-terminal domain APL_1705 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APL_1705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APL_1710 PF01370 NAD dependent epimerase/dehydratase family APL_1711 PF01327 Polypeptide deformylase APL_1712 PF17782 DprA winged helix domain APL_1712 PF02481 DNA recombination-mediator protein A APL_1713 PF03169 OPT oligopeptide transporter protein APL_1714 PF03611 PTS system sugar-specific permease component APL_1716 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APL_1717 PF00467 KOW motif APL_1717 PF02357 Transcription termination factor nusG APL_1718 PF00298 Ribosomal protein L11, RNA binding domain APL_1718 PF03946 Ribosomal protein L11, N-terminal domain APL_1719 PF00687 Ribosomal protein L1p/L10e family APL_1720 PF00466 Ribosomal protein L10 APL_1721 PF00542 Ribosomal protein L7/L12 C-terminal domain APL_1721 PF16320 Ribosomal protein L7/L12 dimerisation domain APL_1727 PF04563 RNA polymerase beta subunit APL_1727 PF00562 RNA polymerase Rpb2, domain 6 APL_1727 PF04565 RNA polymerase Rpb2, domain 3 APL_1727 PF04561 RNA polymerase Rpb2, domain 2 APL_1727 PF04560 RNA polymerase Rpb2, domain 7 APL_1727 PF10385 RNA polymerase beta subunit external 1 domain APL_1728 PF04998 RNA polymerase Rpb1, domain 5 APL_1728 PF05000 RNA polymerase Rpb1, domain 4 APL_1728 PF00623 RNA polymerase Rpb1, domain 2 APL_1728 PF04983 RNA polymerase Rpb1, domain 3 APL_1728 PF04997 RNA polymerase Rpb1, domain 1 APL_1730 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APL_1731 PF01850 PIN domain APL_1735 PF00004 ATPase family associated with various cellular activities (AAA) APL_1735 PF07724 AAA domain (Cdc48 subfamily) APL_1735 PF10431 C-terminal, D2-small domain, of ClpB protein APL_1736 PF00227 Proteasome subunit APL_1737 PF17746 SfsA N-terminal OB domain APL_1737 PF03749 Sugar fermentation stimulation protein RE domain APL_1738 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APL_1739 PF00730 HhH-GPD superfamily base excision DNA repair protein APL_1739 PF14815 NUDIX domain APL_1740 PF04362 Bacterial Fe(2+) trafficking APL_1741 PF01464 Transglycosylase SLT domain APL_1741 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APL_1742 PF00448 SRP54-type protein, GTPase domain APL_1742 PF02881 SRP54-type protein, helical bundle domain APL_1742 PF02978 Signal peptide binding domain APL_1743 PF00149 Calcineurin-like phosphoesterase APL_1743 PF02872 5'-nucleotidase, C-terminal domain APL_1744 PF01494 FAD binding domain APL_1745 PF01381 Helix-turn-helix APL_1746 PF05973 Phage derived protein Gp49-like (DUF891) APL_1747 PF01078 Magnesium chelatase, subunit ChlI APL_1747 PF13335 Magnesium chelatase, subunit ChlI C-terminal APL_1749 PF00561 alpha/beta hydrolase fold APL_1750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APL_1750 PF16582 Middle domain of thiamine pyrophosphate APL_1750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APL_1751 PF13472 GDSL-like Lipase/Acylhydrolase family APL_1751 PF02348 Cytidylyltransferase APL_1752 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase APL_1753 PF00480 ROK family APL_1754 PF00701 Dihydrodipicolinate synthetase family APL_1755 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APL_1756 PF01979 Amidohydrolase family APL_1757 PF10415 Fumarase C C-terminus APL_1757 PF00206 Lyase APL_1759 PF00338 Ribosomal protein S10p/S20e APL_1760 PF00297 Ribosomal protein L3 APL_1761 PF00573 Ribosomal protein L4/L1 family APL_1762 PF00276 Ribosomal protein L23 APL_1763 PF00181 Ribosomal Proteins L2, RNA binding domain APL_1763 PF03947 Ribosomal Proteins L2, C-terminal domain APL_1764 PF00203 Ribosomal protein S19 APL_1765 PF00237 Ribosomal protein L22p/L17e APL_1766 PF07650 KH domain APL_1766 PF00189 Ribosomal protein S3, C-terminal domain APL_1767 PF00252 Ribosomal protein L16p/L10e APL_1768 PF00831 Ribosomal L29 protein APL_1769 PF00366 Ribosomal protein S17 APL_1770 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APL_1770 PF00467 KOW motif APL_1771 PF00281 Ribosomal protein L5 APL_1771 PF00673 ribosomal L5P family C-terminus APL_1772 PF00253 Ribosomal protein S14p/S29e APL_1773 PF00410 Ribosomal protein S8 APL_1774 PF00347 Ribosomal protein L6 APL_1775 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APL_1776 PF00333 Ribosomal protein S5, N-terminal domain APL_1776 PF03719 Ribosomal protein S5, C-terminal domain APL_1777 PF00327 Ribosomal protein L30p/L7e APL_1778 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APL_1779 PF00344 SecY translocase APL_1780 PF00444 Ribosomal protein L36 APL_1781 PF00416 Ribosomal protein S13/S18 APL_1782 PF00411 Ribosomal protein S11 APL_1783 PF00163 Ribosomal protein S4/S9 N-terminal domain APL_1783 PF01479 S4 domain APL_1784 PF01000 RNA polymerase Rpb3/RpoA insert domain APL_1784 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APL_1784 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APL_1785 PF01196 Ribosomal protein L17 APL_1786 PF00886 Ribosomal protein S16 APL_1787 PF05239 PRC-barrel domain APL_1787 PF01782 RimM N-terminal domain APL_1788 PF01746 tRNA (Guanine-1)-methyltransferase APL_1789 PF01245 Ribosomal protein L19 APL_1790 PF08007 Cupin superfamily protein APL_1792 PF01032 FecCD transport family APL_1793 PF00005 ABC transporter APL_1794 PF00127 Copper binding proteins, plastocyanin/azurin family APL_1797 PF02613 Nitrate reductase delta subunit APL_1798 PF00384 Molybdopterin oxidoreductase APL_1798 PF01568 Molydopterin dinucleotide binding domain APL_1798 PF18364 Molybdopterin oxidoreductase N-terminal domain APL_1800 PF02091 Glycyl-tRNA synthetase alpha subunit APL_1801 PF04480 Protein of unknown function (DUF559) APL_1803 PF02092 Glycyl-tRNA synthetase beta subunit APL_1803 PF05746 DALR anticodon binding domain APL_1804 PF17347 Family of unknown function (DUF5377) APL_1805 PF02899 Phage integrase, N-terminal SAM-like domain APL_1805 PF00589 Phage integrase family APL_1808 PF00149 Calcineurin-like phosphoesterase APL_1809 PF07509 Protein of unknown function (DUF1523) APL_1810 PF01026 TatD related DNase APL_1814 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APL_1815 PF06629 MltA-interacting protein MipA APL_1816 PF09115 DNA polymerase III, delta subunit, C terminal APL_1817 PF02223 Thymidylate kinase APL_1818 PF02618 YceG-like family APL_1819 PF00550 Phosphopantetheine attachment site APL_1820 PF00834 Ribulose-phosphate 3 epimerase family APL_1821 PF01197 Ribosomal protein L31 APL_1822 PF00444 Ribosomal protein L36 APL_1823 PF00912 Transglycosylase APL_1823 PF14814 Bifunctional transglycosylase second domain APL_1823 PF00905 Penicillin binding protein transpeptidase domain APL_1824 PF00378 Enoyl-CoA hydratase/isomerase APL_1825 PF13291 ACT domain APL_1825 PF04607 Region found in RelA / SpoT proteins APL_1825 PF02824 TGS domain APL_1826 PF01192 RNA polymerase Rpb6 APL_1827 PF00271 Helicase conserved C-terminal domain APL_1827 PF17191 RecG wedge domain APL_1827 PF00270 DEAD/DEAH box helicase APL_1830 PF03129 Anticodon binding domain APL_1830 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APL_1830 PF04073 Aminoacyl-tRNA editing domain APL_1831 PF04542 Sigma-70 region 2 APL_1831 PF08281 Sigma-70, region 4 APL_1832 PF00174 Oxidoreductase molybdopterin binding domain APL_1833 PF01794 Ferric reductase like transmembrane component APL_1834 PF04545 Sigma-70, region 4 APL_1834 PF04542 Sigma-70 region 2 APL_1834 PF00140 Sigma-70 factor, region 1.2 APL_1835 PF07690 Major Facilitator Superfamily APL_1837 PF03590 Aspartate-ammonia ligase APL_1838 PF13404 AsnC-type helix-turn-helix domain APL_1838 PF01037 Lrp/AsnC ligand binding domain APL_1839 PF01048 Phosphorylase superfamily APL_1840 PF04345 Chorismate lyase APL_1841 PF01177 Asp/Glu/Hydantoin racemase APL_1842 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APL_1842 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APL_1843 PF00667 FAD binding domain APL_1843 PF00258 Flavodoxin APL_1843 PF00175 Oxidoreductase NAD-binding domain APL_1844 PF00009 Elongation factor Tu GTP binding domain APL_1846 PF00528 Binding-protein-dependent transport system inner membrane component APL_1847 PF00528 Binding-protein-dependent transport system inner membrane component APL_1848 PF12857 TOBE-like domain APL_1848 PF17850 CysA C-terminal regulatory domain APL_1848 PF00005 ABC transporter APL_1849 PF01070 FMN-dependent dehydrogenase APL_1850 PF08279 HTH domain APL_1850 PF03099 Biotin/lipoate A/B protein ligase family APL_1850 PF02237 Biotin protein ligase C terminal domain APL_1851 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APL_1851 PF01565 FAD binding domain APL_1852 PF01389 OmpA-like transmembrane domain APL_1852 PF00691 OmpA family APL_1853 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APL_1853 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APL_1854 PF04403 Paraquat-inducible protein A APL_1855 PF01841 Transglutaminase-like superfamily APL_1857 PF00403 Heavy-metal-associated domain APL_1859 PF00465 Iron-containing alcohol dehydrogenase APL_1860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APL_1860 PF03466 LysR substrate binding domain APL_1861 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APL_1861 PF14602 Hexapeptide repeat of succinyl-transferase APL_1861 PF00132 Bacterial transferase hexapeptide (six repeats) APL_1862 PF01220 Dehydroquinase class II APL_1863 PF04488 Glycosyltransferase sugar-binding region containing DXD motif APL_1864 PF00364 Biotin-requiring enzyme APL_1865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APL_1865 PF02785 Biotin carboxylase C-terminal domain APL_1865 PF00289 Biotin carboxylase, N-terminal domain APL_1866 PF12804 MobA-like NTP transferase domain APL_1867 PF06288 Protein of unknown function (DUF1040) APL_1868 PF01323 DSBA-like thioredoxin domain APL_1870 PF05036 Sporulation related domain APL_1870 PF05036 Sporulation related domain APL_1871 PF04445 Putative SAM-dependent methyltransferase APL_1872 PF02557 D-alanyl-D-alanine carboxypeptidase APL_1873 PF07687 Peptidase dimerisation domain APL_1873 PF01546 Peptidase family M20/M25/M40 APL_1874 PF03960 ArsC family APL_1876 PF00809 Pterin binding enzyme APL_1877 PF01479 S4 domain APL_1877 PF00849 RNA pseudouridylate synthase APL_1880 PF05552 Conserved TM helix APL_1880 PF00924 Mechanosensitive ion channel APL_1881 PF02785 Biotin carboxylase C-terminal domain APL_1881 PF00289 Biotin carboxylase, N-terminal domain APL_1881 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APL_1883 PF00675 Insulinase (Peptidase family M16) APL_1883 PF05193 Peptidase M16 inactive domain APL_1883 PF16187 Middle or third domain of peptidase_M16 APL_1884 PF17946 RecC C-terminal domain APL_1889 PF07977 FabA-like domain APL_1890 PF05362 Lon protease (S16) C-terminal proteolytic domain APL_1890 PF13654 AAA domain APL_1891 PF06303 MatP N-terminal domain APL_1891 PF17414 MatP C-terminal ribbon-helix-helix domain APL_1892 PF00579 tRNA synthetases class I (W and Y) APL_1893 PF13419 Haloacid dehalogenase-like hydrolase APL_1895 PF01790 Prolipoprotein diacylglyceryl transferase APL_1896 PF01925 Sulfite exporter TauE/SafE APL_1897 PF00293 NUDIX domain APL_1899 PF00719 Inorganic pyrophosphatase APL_1900 PF05175 Methyltransferase small domain APL_1901 PF03737 Aldolase/RraA APL_1902 PF01226 Formate/nitrite transporter APL_1905 PF00226 DnaJ domain APL_1905 PF00684 DnaJ central domain APL_1905 PF01556 DnaJ C terminal domain APL_1906 PF00012 Hsp70 protein APL_1907 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APL_1907 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APL_1909 PF13407 Periplasmic binding protein domain APL_1910 PF00005 ABC transporter APL_1911 PF02653 Branched-chain amino acid transport system / permease component APL_1912 PF12833 Helix-turn-helix domain APL_1913 PF01431 Peptidase family M13 APL_1913 PF05649 Peptidase family M13 APL_1914 PF10571 Uncharacterised protein family UPF0547 APL_1915 PF00474 Sodium:solute symporter family APL_1916 PF06196 Protein of unknown function (DUF997) APL_1917 PF01340 Met Apo-repressor, MetJ APL_1918 PF04333 MlaA lipoprotein APL_1919 PF01263 Aldose 1-epimerase APL_1922 PF01522 Polysaccharide deacetylase APL_1922 PF14883 Hypothetical glycosyl hydrolase family 13 APL_1923 PF00535 Glycosyl transferase family 2 APL_1925 PF00121 Triosephosphate isomerase APL_1926 PF01142 tRNA pseudouridine synthase D (TruD) APL_1927 PF01975 Survival protein SurE APL_1928 PF09335 SNARE associated Golgi protein APL_1930 PF01551 Peptidase family M23 APL_1930 PF01476 LysM domain APL_1931 PF03352 Methyladenine glycosylase APL_1934 PF07670 Nucleoside recognition APL_1935 PF07670 Nucleoside recognition APL_1937 PF00762 Ferrochelatase APL_1938 PF00468 Ribosomal protein L34 APL_1939 PF00825 Ribonuclease P APL_1940 PF01809 Putative membrane protein insertion efficiency factor APL_1941 PF03951 Glutamine synthetase, beta-Grasp domain APL_1941 PF00120 Glutamine synthetase, catalytic domain APL_1942 PF00149 Calcineurin-like phosphoesterase APL_1943 PF00293 NUDIX domain APL_1944 PF06146 Phosphate-starvation-inducible E APL_1945 PF01648 4'-phosphopantetheinyl transferase superfamily APL_1946 PF00892 EamA-like transporter family APL_1947 PF06965 Na+/H+ antiporter 1 APL_1949 PF02580 D-Tyr-tRNA(Tyr) deacylase APL_1950 PF03631 Virulence factor BrkB APL_1951 PF00171 Aldehyde dehydrogenase family APL_1958 PF08676 MutL C terminal dimerisation domain APL_1958 PF01119 DNA mismatch repair protein, C-terminal domain APL_1959 PF08240 Alcohol dehydrogenase GroES-like domain APL_1959 PF00107 Zinc-binding dehydrogenase APL_1961 PF17209 Hfq protein APL_1962 PF13167 GTP-binding GTPase N-terminal APL_1962 PF01926 50S ribosome-binding GTPase APL_1962 PF16360 GTP-binding GTPase Middle Region APL_1963 PF03641 Possible lysine decarboxylase APL_1964 PF03819 MazG nucleotide pyrophosphohydrolase domain APL_1965 PF13545 Crp-like helix-turn-helix domain APL_1965 PF00027 Cyclic nucleotide-binding domain APL_1966 PF06794 Uncharacterised protein family (UPF0270) APL_1967 PF00440 Bacterial regulatory proteins, tetR family APL_1968 PF00692 dUTPase APL_1969 PF02441 Flavoprotein APL_1969 PF04127 DNA / pantothenate metabolism flavoprotein APL_1970 PF04002 RadC-like JAB domain APL_1971 PF00830 Ribosomal L28 family APL_1972 PF00471 Ribosomal protein L33 APL_1974 PF00202 Aminotransferase class-III APL_1975 PF00282 Pyridoxal-dependent decarboxylase conserved domain APL_1976 PF01206 Sulfurtransferase TusA APL_1977 PF04143 Sulphur transport APL_1978 PF04219 Protein of unknown function, DUF APL_1979 PF05958 tRNA (Uracil-5-)-methyltransferase APL_1981 PF01544 CorA-like Mg2+ transporter protein APL_1982 PF01209 ubiE/COQ5 methyltransferase family APL_1984 PF03109 ABC1 family APL_1985 PF02416 mttA/Hcf106 family APL_1987 PF00902 Sec-independent protein translocase protein (TatC) APL_1988 PF00490 Delta-aminolevulinic acid dehydratase APL_1990 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APL_1990 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APL_1990 PF06827 Zinc finger found in FPG and IleRS APL_1991 PF05525 Branched-chain amino acid transport protein APL_1993 PF00698 Acyl transferase domain APL_1994 PF02677 Epoxyqueuosine reductase QueH APL_1995 PF00348 Polyprenyl synthetase APL_1997 PF03358 NADPH-dependent FMN reductase APL_1998 PF07681 DoxX APL_1999 PF00829 Ribosomal prokaryotic L21 protein APL_2000 PF01016 Ribosomal L27 protein APL_2001 PF00892 EamA-like transporter family APL_2003 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APL_2004 PF00156 Phosphoribosyl transferase domain APL_2005 PF05175 Methyltransferase small domain APL_2005 PF08468 Methyltransferase small domain N-terminal APL_2007 PF00583 Acetyltransferase (GNAT) family APL_2008 PF00271 Helicase conserved C-terminal domain APL_2008 PF00270 DEAD/DEAH box helicase APL_2009 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APL_2009 PF01243 Pyridoxamine 5'-phosphate oxidase APL_2010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APL_2011 PF00171 Aldehyde dehydrogenase family APL_2012 PF01184 GPR1/FUN34/yaaH family APL_2013 PF00005 ABC transporter APL_2014 PF01497 Periplasmic binding protein APL_2015 PF01032 FecCD transport family APL_2016 PF07715 TonB-dependent Receptor Plug Domain APL_2016 PF00593 TonB dependent receptor APL_2018 PF01259 SAICAR synthetase APL_2019 PF08029 HisG, C-terminal domain APL_2019 PF01634 ATP phosphoribosyltransferase APL_2020 PF00815 Histidinol dehydrogenase APL_2021 PF00155 Aminotransferase class I and II APL_2023 PF00475 Imidazoleglycerol-phosphate dehydratase APL_2024 PF17761 DUF1016 N-terminal domain APL_2024 PF06250 YhcG PDDEXK nuclease domain APL_2025 PF00117 Glutamine amidotransferase class-I APL_2026 PF00977 Histidine biosynthesis protein APL_2027 PF00977 Histidine biosynthesis protein APL_2028 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APL_2028 PF01502 Phosphoribosyl-AMP cyclohydrolase APL_2029 PF02592 Putative vitamin uptake transporter APL_2030 PF00557 Metallopeptidase family M24 APL_2032 PF00356 Bacterial regulatory proteins, lacI family APL_2032 PF13407 Periplasmic binding protein domain APL_2033 PF08244 Glycosyl hydrolases family 32 C terminal APL_2033 PF00251 Glycosyl hydrolases family 32 N-terminal domain APL_2034 PF00294 pfkB family carbohydrate kinase APL_2035 PF07732 Multicopper oxidase APL_2036 PF12704 MacB-like periplasmic core domain APL_2036 PF02687 FtsX-like permease family APL_2037 PF00005 ABC transporter APL_2038 PF02687 FtsX-like permease family APL_2038 PF12704 MacB-like periplasmic core domain APL_2039 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APL_2039 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APL_2040 PF00793 DAHP synthetase I family APL_2041 PF13369 Transglutaminase-like superfamily APL_2042 PF13847 Methyltransferase domain APL_2042 PF17827 PrmC N-terminal domain APL_2044 PF00472 RF-1 domain APL_2044 PF03462 PCRF domain APL_2045 PF00581 Rhodanese-like domain APL_2046 PF04143 Sulphur transport