locus-tag class description D1099_00005 PF00308 Bacterial dnaA protein D1099_00005 PF08299 Bacterial dnaA protein helix-turn-helix D1099_00005 PF11638 DnaA N-terminal domain D1099_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain D1099_00010 PF02767 DNA polymerase III beta subunit, central domain D1099_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain D1099_00015 PF02463 RecF/RecN/SMC N terminal domain D1099_00020 PF00080 Copper/zinc superoxide dismutase (SODC) D1099_00025 PF02774 Semialdehyde dehydrogenase, dimerisation domain D1099_00025 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1099_00035 PF02684 Lipid-A-disaccharide synthetase D1099_00040 PF01343 Peptidase family S49 D1099_00040 PF08496 Peptidase family S49 N-terminal D1099_00045 PF02381 MraZ protein, putative antitoxin-like D1099_00050 PF01795 MraW methylase family D1099_00055 PF04999 Cell division protein FtsL D1099_00060 PF00905 Penicillin binding protein transpeptidase domain D1099_00060 PF03717 Penicillin-binding Protein dimerisation domain D1099_00065 PF01225 Mur ligase family, catalytic domain D1099_00065 PF02875 Mur ligase family, glutamate ligase domain D1099_00065 PF08245 Mur ligase middle domain D1099_00070 PF01225 Mur ligase family, catalytic domain D1099_00070 PF02875 Mur ligase family, glutamate ligase domain D1099_00070 PF08245 Mur ligase middle domain D1099_00075 PF00953 Glycosyl transferase family 4 D1099_00075 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D1099_00080 PF02875 Mur ligase family, glutamate ligase domain D1099_00080 PF08245 Mur ligase middle domain D1099_00085 PF01098 Cell cycle protein D1099_00090 PF04101 Glycosyltransferase family 28 C-terminal domain D1099_00090 PF03033 Glycosyltransferase family 28 N-terminal domain D1099_00095 PF01225 Mur ligase family, catalytic domain D1099_00095 PF02875 Mur ligase family, glutamate ligase domain D1099_00095 PF08245 Mur ligase middle domain D1099_00100 PF01820 D-ala D-ala ligase N-terminus D1099_00100 PF07478 D-ala D-ala ligase C-terminus D1099_00105 PF03799 Cell division protein FtsQ D1099_00105 PF08478 POTRA domain, FtsQ-type D1099_00110 PF02491 SHS2 domain inserted in FTSA D1099_00115 PF12327 FtsZ family, C-terminal domain D1099_00115 PF00091 Tubulin/FtsZ family, GTPase domain D1099_00120 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D1099_00125 PF02463 RecF/RecN/SMC N terminal domain D1099_00130 PF00005 ABC transporter D1099_00130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1099_00135 PF00528 Binding-protein-dependent transport system inner membrane component D1099_00135 PF12911 N-terminal TM domain of oligopeptide transport permease C D1099_00140 PF00528 Binding-protein-dependent transport system inner membrane component D1099_00145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1099_00150 PF16658 Class II release factor RF3, C-terminal domain D1099_00150 PF03144 Elongation factor Tu domain 2 D1099_00150 PF00009 Elongation factor Tu GTP binding domain D1099_00165 PF01195 Peptidyl-tRNA hydrolase D1099_00170 PF01926 50S ribosome-binding GTPase D1099_00170 PF06071 Protein of unknown function (DUF933) D1099_00185 PF05433 Glycine zipper 2TM domain D1099_00190 PF06185 YecM protein D1099_00195 PF03485 Arginyl tRNA synthetase N terminal domain D1099_00195 PF05746 DALR anticodon binding domain D1099_00195 PF00750 tRNA synthetases class I (R) D1099_00200 PF01018 GTP1/OBG D1099_00200 PF01926 50S ribosome-binding GTPase D1099_00205 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) D1099_00210 PF00588 SpoU rRNA Methylase family D1099_00210 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1099_00215 PF13091 PLD-like domain D1099_00220 PF08264 Anticodon-binding domain of tRNA D1099_00220 PF00133 tRNA synthetases class I (I, L, M and V) D1099_00220 PF06827 Zinc finger found in FPG and IleRS D1099_00225 PF01687 Riboflavin kinase D1099_00225 PF06574 FAD synthetase D1099_00230 PF01467 Cytidylyltransferase-like D1099_00230 PF13521 AAA domain D1099_00235 PF00149 Calcineurin-like phosphoesterase D1099_00240 PF00072 Response regulator receiver domain D1099_00240 PF00486 Transcriptional regulatory protein, C terminal D1099_00255 PF01168 Alanine racemase, N-terminal domain D1099_00265 PF03144 Elongation factor Tu domain 2 D1099_00265 PF00679 Elongation factor G C-terminus D1099_00265 PF00009 Elongation factor Tu GTP binding domain D1099_00270 PF00462 Glutaredoxin D1099_00275 PF01138 3' exoribonuclease family, domain 1 D1099_00275 PF03725 3' exoribonuclease family, domain 2 D1099_00280 PF08340 Domain of unknown function (DUF1732) D1099_00280 PF03755 YicC-like family, N-terminal region D1099_00285 PF01571 Aminomethyltransferase folate-binding domain D1099_00290 PF00037 4Fe-4S binding domain D1099_00295 PF00196 Bacterial regulatory proteins, luxR family D1099_00295 PF00072 Response regulator receiver domain D1099_00300 PF01170 Putative RNA methylase family UPF0020 D1099_00300 PF02926 THUMP domain D1099_00300 PF10672 S-adenosylmethionine-dependent methyltransferase D1099_00305 PF00588 SpoU rRNA Methylase family D1099_00310 PF00923 Transaldolase/Fructose-6-phosphate aldolase D1099_00340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1099_00345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1099_00350 PF00528 Binding-protein-dependent transport system inner membrane component D1099_00355 PF00528 Binding-protein-dependent transport system inner membrane component D1099_00355 PF12911 N-terminal TM domain of oligopeptide transport permease C D1099_00360 PF00005 ABC transporter D1099_00360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1099_00365 PF00005 ABC transporter D1099_00365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1099_00370 PF06146 Phosphate-starvation-inducible E D1099_00380 PF01042 Endoribonuclease L-PSP D1099_00385 PF01063 Amino-transferase class IV D1099_00390 PF00462 Glutaredoxin D1099_00395 PF13662 Toprim domain D1099_00395 PF02132 RecR protein D1099_00400 PF02575 YbaB/EbfC DNA-binding family D1099_00405 PF03544 Gram-negative bacterial TonB protein C-terminal D1099_00410 PF02472 Biopolymer transport protein ExbD/TolR D1099_00415 PF01618 MotA/TolQ/ExbB proton channel family D1099_00420 PF00581 Rhodanese-like domain D1099_00430 PF03610 PTS system fructose IIA component D1099_00430 PF05524 PEP-utilising enzyme, N-terminal D1099_00430 PF00391 PEP-utilising enzyme, mobile domain D1099_00430 PF00381 PTS HPr component phosphorylation site D1099_00435 PF02734 DAK2 domain D1099_00440 PF02733 Dak1 domain D1099_00445 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1099_00450 PF02348 Cytidylyltransferase D1099_00455 PF06078 Bacterial protein of unknown function (DUF937) D1099_00460 PF00293 NUDIX domain D1099_00460 PF09297 NADH pyrophosphatase zinc ribbon domain D1099_00465 PF00849 RNA pseudouridylate synthase D1099_00475 PF04186 FxsA cytoplasmic membrane protein D1099_00480 PF00557 Metallopeptidase family M24 D1099_00485 PF01206 Sulfurtransferase TusA D1099_00490 PF06877 Regulator of ribonuclease activity B D1099_00495 PF01926 50S ribosome-binding GTPase D1099_00505 PF02535 ZIP Zinc transporter D1099_00510 PF00920 Dehydratase family D1099_00520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1099_00520 PF00205 Thiamine pyrophosphate enzyme, central domain D1099_00520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1099_00525 PF02335 Cytochrome c552 D1099_00535 PF13247 4Fe-4S dicluster domain D1099_00540 PF03916 Polysulphide reductase, NrfD D1099_00545 PF13018 Extended Signal Peptide of Type V secretion system D1099_00545 PF03895 YadA-like membrane anchor domain D1099_00545 PF05658 Head domain of trimeric autotransporter adhesin D1099_00545 PF05662 Coiled stalk of trimeric autotransporter adhesin D1099_00550 PF13018 Extended Signal Peptide of Type V secretion system D1099_00550 PF05662 Coiled stalk of trimeric autotransporter adhesin D1099_00550 PF05662 Coiled stalk of trimeric autotransporter adhesin D1099_00550 PF05658 Head domain of trimeric autotransporter adhesin D1099_00550 PF05658 Head domain of trimeric autotransporter adhesin D1099_00550 PF03895 YadA-like membrane anchor domain D1099_00550 PF13018 Extended Signal Peptide of Type V secretion system D1099_00550 PF13018 Extended Signal Peptide of Type V secretion system D1099_00550 PF03895 YadA-like membrane anchor domain D1099_00550 PF03895 YadA-like membrane anchor domain D1099_00550 PF05658 Head domain of trimeric autotransporter adhesin D1099_00550 PF05662 Coiled stalk of trimeric autotransporter adhesin D1099_00555 PF00860 Permease family D1099_00560 PF00171 Aldehyde dehydrogenase family D1099_00560 PF01619 Proline dehydrogenase D1099_00560 PF14850 DNA-binding domain of Proline dehydrogenase D1099_00560 PF18327 Proline utilization A proline dehydrogenase N-terminal domain D1099_00565 PF00474 Sodium:solute symporter family D1099_00570 PF09339 IclR helix-turn-helix domain D1099_00570 PF01614 Bacterial transcriptional regulator D1099_00575 PF01812 5-formyltetrahydrofolate cyclo-ligase family D1099_00585 PF05164 Cell division protein ZapA D1099_00590 PF03695 Uncharacterised protein family (UPF0149) D1099_00595 PF01208 Uroporphyrinogen decarboxylase (URO-D) D1099_00600 PF04222 Protein of unknown function (DUF416) D1099_00605 PF00216 Bacterial DNA-binding protein D1099_00610 PF00303 Thymidylate synthase D1099_00620 PF06968 Biotin and Thiamin Synthesis associated domain D1099_00620 PF04055 Radical SAM superfamily D1099_00625 PF00313 'Cold-shock' DNA-binding domain D1099_00630 PF04352 ProQ/FINO family D1099_00635 PF11818 C-terminal domain of tail specific protease (DUF3340) D1099_00635 PF00595 PDZ domain D1099_00635 PF03572 Peptidase family S41 D1099_00635 PF17804 Tail specific protease N-terminal domain D1099_00640 PF03734 L,D-transpeptidase catalytic domain D1099_00645 PF05951 Bacterial protein of unknown function (DUF882) D1099_00650 PF00753 Metallo-beta-lactamase superfamily D1099_00665 PF01230 HIT domain D1099_00670 PF00950 ABC 3 transport family D1099_00675 PF00950 ABC 3 transport family D1099_00680 PF01351 Ribonuclease HII D1099_00685 PF03193 RsgA GTPase D1099_00690 PF03466 LysR substrate binding domain D1099_00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_00695 PF13419 Haloacid dehalogenase-like hydrolase D1099_00700 PF03466 LysR substrate binding domain D1099_00700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_00710 PF00710 Asparaginase, N-terminal D1099_00710 PF17763 Glutaminase/Asparaginase C-terminal domain D1099_00715 PF06418 CTP synthase N-terminus D1099_00715 PF00117 Glutamine amidotransferase class-I D1099_00720 PF10063 Uncharacterized integral membrane protein (DUF2301) D1099_00725 PF00694 Aconitase C-terminal domain D1099_00730 PF00330 Aconitase family (aconitate hydratase) D1099_00735 PF05651 Putative sugar diacid recognition D1099_00735 PF17853 GGDEF-like domain D1099_00735 PF13556 PucR C-terminal helix-turn-helix domain D1099_00740 PF02447 GntP family permease D1099_00745 PF02595 Glycerate kinase family D1099_00750 PF00708 Acylphosphatase D1099_00755 PF11398 Protein of unknown function (DUF2813) D1099_00760 PF03641 Possible lysine decarboxylase D1099_00760 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases D1099_00760 PF11892 Domain of unknown function (DUF3412) D1099_00765 PF01207 Dihydrouridine synthase (Dus) D1099_00775 PF03477 ATP cone domain D1099_00775 PF02867 Ribonucleotide reductase, barrel domain D1099_00775 PF00317 Ribonucleotide reductase, all-alpha domain D1099_00780 PF01521 Iron-sulphur cluster biosynthesis D1099_00780 PF01106 NifU-like domain D1099_00785 PF11973 NQRA C-terminal domain D1099_00785 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) D1099_00790 PF03116 NQR2, RnfD, RnfE family D1099_00795 PF04205 FMN-binding domain D1099_00800 PF02508 Rnf-Nqr subunit, membrane protein D1099_00805 PF02508 Rnf-Nqr subunit, membrane protein D1099_00810 PF00970 Oxidoreductase FAD-binding domain D1099_00810 PF00111 2Fe-2S iron-sulfur cluster binding domain D1099_00810 PF00175 Oxidoreductase NAD-binding domain D1099_00815 PF02424 ApbE family D1099_00820 PF04400 (Na+)-NQR maturation NqrM D1099_00830 PF12832 MFS_1 like family D1099_00835 PF14748 Pyrroline-5-carboxylate reductase dimerisation D1099_00835 PF03807 NADP oxidoreductase coenzyme F420-dependent D1099_00840 PF04381 Putative exonuclease, RdgC D1099_00845 PF13419 Haloacid dehalogenase-like hydrolase D1099_00865 PF02508 Rnf-Nqr subunit, membrane protein D1099_00870 PF04060 Putative Fe-S cluster D1099_00875 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D1099_00875 PF12838 4Fe-4S dicluster domain D1099_00875 PF13375 RnfC Barrel sandwich hybrid domain D1099_00880 PF03458 UPF0126 domain D1099_00885 PF03116 NQR2, RnfD, RnfE family D1099_00890 PF04205 FMN-binding domain D1099_00895 PF02508 Rnf-Nqr subunit, membrane protein D1099_00900 PF03279 Bacterial lipid A biosynthesis acyltransferase D1099_00915 PF01258 Prokaryotic dksA/traR C4-type zinc finger D1099_00920 PF01743 Poly A polymerase head domain D1099_00920 PF12626 Polymerase A arginine-rich C-terminus D1099_00920 PF12627 Probable RNA and SrmB- binding site of polymerase A D1099_00925 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D1099_00935 PF11739 Dicarboxylate transport D1099_00945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1099_00950 PF00929 Exonuclease D1099_00960 PF01817 Chorismate mutase type II D1099_00960 PF02153 Prephenate dehydrogenase D1099_00965 PF00793 DAHP synthetase I family D1099_00970 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1099_00975 PF00224 Pyruvate kinase, barrel domain D1099_00975 PF02887 Pyruvate kinase, alpha/beta domain D1099_00980 PF00300 Histidine phosphatase superfamily (branch 1) D1099_00985 PF01207 Dihydrouridine synthase (Dus) D1099_00990 PF02954 Bacterial regulatory protein, Fis family D1099_00995 PF00209 Sodium:neurotransmitter symporter family D1099_01000 PF02086 D12 class N6 adenine-specific DNA methyltransferase D1099_01005 PF01761 3-dehydroquinate synthase D1099_01010 PF01202 Shikimate kinase D1099_01015 PF17092 Penicillin-binding protein OB-like domain D1099_01015 PF00912 Transglycosylase D1099_01015 PF00905 Penicillin binding protein transpeptidase domain D1099_01020 PF11104 Type IV pilus assembly protein PilM; D1099_01040 PF03958 Bacterial type II/III secretion system short domain D1099_01040 PF00263 Bacterial type II and III secretion system protein D1099_01045 PF01029 NusB family D1099_01050 PF00586 AIR synthase related protein, N-terminal domain D1099_01050 PF02769 AIR synthase related protein, C-terminal domain D1099_01055 PF04608 Phosphatidylglycerophosphatase A D1099_01060 PF01810 LysE type translocator D1099_01065 PF00588 SpoU rRNA Methylase family D1099_01065 PF08032 RNA 2'-O ribose methyltransferase substrate binding D1099_01070 PF00459 Inositol monophosphatase family D1099_01075 PF02780 Transketolase, C-terminal domain D1099_01075 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D1099_01075 PF02779 Transketolase, pyrimidine binding domain D1099_01085 PF00464 Serine hydroxymethyltransferase D1099_01090 PF01513 ATP-NAD kinase D1099_01095 PF18019 HD domain D1099_01100 PF01867 CRISPR associated protein Cas1 D1099_01110 PF09615 CRISPR-associated protein (Cas_Csy3) D1099_01115 PF09614 CRISPR-associated protein (Cas_Csy2) D1099_01125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1099_01125 PF02824 TGS domain D1099_01125 PF03129 Anticodon binding domain D1099_01125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1099_01130 PF03783 Curli production assembly/transport component CsgG D1099_01140 PF05643 Putative bacterial lipoprotein (DUF799) D1099_01145 PF00707 Translation initiation factor IF-3, C-terminal domain D1099_01145 PF05198 Translation initiation factor IF-3, N-terminal domain D1099_01150 PF01632 Ribosomal protein L35 D1099_01155 PF00453 Ribosomal protein L20 D1099_01170 PF00571 CBS domain D1099_01170 PF03471 Transporter associated domain D1099_01170 PF01595 Cyclin M transmembrane N-terminal domain D1099_01175 PF00849 RNA pseudouridylate synthase D1099_01180 PF00300 Histidine phosphatase superfamily (branch 1) D1099_01185 PF03652 Holliday junction resolvase D1099_01190 PF02622 Uncharacterized ACR, COG1678 D1099_01195 PF04452 RNA methyltransferase D1099_01205 PF01722 BolA-like protein D1099_01230 PF07516 SecA Wing and Scaffold domain D1099_01230 PF01043 SecA preprotein cross-linking domain D1099_01230 PF02810 SEC-C motif D1099_01230 PF07517 SecA DEAD-like domain D1099_01240 PF00293 NUDIX domain D1099_01245 PF01118 Semialdehyde dehydrogenase, NAD binding domain D1099_01250 PF00696 Amino acid kinase family D1099_01255 PF00202 Aminotransferase class-III D1099_01260 PF17484 N-Lobe handle Tf-binding protein B D1099_01260 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1099_01260 PF17483 C-lobe handle domain of Tf-binding protein B D1099_01270 PF07497 Rho termination factor, RNA-binding domain D1099_01270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1099_01270 PF07498 Rho termination factor, N-terminal domain D1099_01275 PF00291 Pyridoxal-phosphate dependent enzyme D1099_01280 PF00288 GHMP kinases N terminal domain D1099_01280 PF08544 GHMP kinases C terminal D1099_01285 PF00696 Amino acid kinase family D1099_01285 PF01842 ACT domain D1099_01285 PF13840 ACT domain D1099_01285 PF00742 Homoserine dehydrogenase D1099_01285 PF03447 Homoserine dehydrogenase, NAD binding domain D1099_01290 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D1099_01290 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D1099_01295 PF00842 Alanine racemase, C-terminal domain D1099_01295 PF01168 Alanine racemase, N-terminal domain D1099_01300 PF13538 UvrD-like helicase C-terminal domain D1099_01330 PF01546 Peptidase family M20/M25/M40 D1099_01330 PF07687 Peptidase dimerisation domain D1099_01335 PF00156 Phosphoribosyl transferase domain D1099_01340 PF00625 Guanylate kinase D1099_01345 PF02321 Outer membrane efflux protein D1099_01350 PF03658 RnfH family Ubiquitin D1099_01355 PF03364 Polyketide cyclase / dehydrase and lipid transport D1099_01360 PF03459 TOBE domain D1099_01360 PF00005 ABC transporter D1099_01365 PF00528 Binding-protein-dependent transport system inner membrane component D1099_01375 PF01061 ABC-2 type transporter D1099_01380 PF00005 ABC transporter D1099_01390 PF12169 DNA polymerase III subunits gamma and tau domain III D1099_01390 PF12170 DNA polymerase III tau subunit V interacting with alpha D1099_01395 PF00156 Phosphoribosyl transferase domain D1099_01405 PF01042 Endoribonuclease L-PSP D1099_01410 PF00291 Pyridoxal-phosphate dependent enzyme D1099_01415 PF04073 Aminoacyl-tRNA editing domain D1099_01420 PF00005 ABC transporter D1099_01425 PF01297 Zinc-uptake complex component A periplasmic D1099_01430 PF04358 DsrC like protein D1099_01435 PF01027 Inhibitor of apoptosis-promoting Bax1 D1099_01440 PF01066 CDP-alcohol phosphatidyltransferase D1099_01450 PF01541 GIY-YIG catalytic domain D1099_01450 PF02151 UvrB/uvrC motif D1099_01450 PF08459 UvrC Helix-hairpin-helix N-terminal D1099_01455 PF01026 TatD related DNase D1099_01460 PF00580 UvrD/REP helicase N-terminal domain D1099_01460 PF13361 UvrD-like helicase C-terminal domain D1099_01465 PF00005 ABC transporter D1099_01465 PF08402 TOBE domain D1099_01470 PF00528 Binding-protein-dependent transport system inner membrane component D1099_01475 PF00528 Binding-protein-dependent transport system inner membrane component D1099_01485 PF07499 RuvA, C-terminal domain D1099_01485 PF01330 RuvA N terminal domain D1099_01490 PF05491 RuvB C-terminal winged helix domain D1099_01490 PF05496 Holliday junction DNA helicase RuvB P-loop domain D1099_01490 PF17864 RuvB AAA lid domain D1099_01500 PF00521 DNA gyrase/topoisomerase IV, subunit A D1099_01500 PF03989 DNA gyrase C-terminal domain, beta-propeller D1099_01505 PF02384 N-6 DNA Methylase D1099_01505 PF12161 HsdM N-terminal domain D1099_01520 PF01420 Type I restriction modification DNA specificity domain D1099_01530 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D1099_01530 PF18766 SWI2/SNF2 ATPase D1099_01530 PF12008 Type I restriction and modification enzyme - subunit R C terminal D1099_01535 PF00005 ABC transporter D1099_01535 PF16326 ABC transporter C-terminal domain D1099_01535 PF12848 ABC transporter D1099_01540 PF00899 ThiF family D1099_01545 PF17274 Family of unknown function (DUF5339) D1099_01550 PF01654 Cytochrome bd terminal oxidase subunit I D1099_01555 PF02322 Cytochrome bd terminal oxidase subunit II D1099_01570 PF03061 Thioesterase superfamily D1099_01575 PF01618 MotA/TolQ/ExbB proton channel family D1099_01580 PF02472 Biopolymer transport protein ExbD/TolR D1099_01585 PF06519 TolA C-terminal D1099_01585 PF06519 TolA C-terminal D1099_01590 PF07676 WD40-like Beta Propeller Repeat D1099_01590 PF04052 TolB amino-terminal domain D1099_01595 PF00691 OmpA family D1099_01605 PF00226 DnaJ domain D1099_01605 PF05099 Tellurite resistance protein TerB D1099_01610 PF01207 Dihydrouridine synthase (Dus) D1099_01615 PF05128 Domain of unknown function (DUF697) D1099_01620 PF00005 ABC transporter D1099_01620 PF12848 ABC transporter D1099_01630 PF00994 Probable molybdopterin binding domain D1099_01630 PF03454 MoeA C-terminal region (domain IV) D1099_01630 PF03453 MoeA N-terminal region (domain I and II) D1099_01635 PF00899 ThiF family D1099_01645 PF05958 tRNA (Uracil-5-)-methyltransferase D1099_01645 PF01938 TRAM domain D1099_01650 PF01966 HD domain D1099_01650 PF13286 Phosphohydrolase-associated domain D1099_01655 PF18339 RapA N-terminal Tudor like domain 1 D1099_01655 PF18337 RapA N-terminal Tudor like domain D1099_01655 PF00176 SNF2 family N-terminal domain D1099_01655 PF12137 RNA polymerase recycling family C-terminal D1099_01655 PF00271 Helicase conserved C-terminal domain D1099_01660 PF00849 RNA pseudouridylate synthase D1099_01665 PF01510 N-acetylmuramoyl-L-alanine amidase D1099_01670 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D1099_01675 PF00156 Phosphoribosyl transferase domain D1099_01680 PF01717 Cobalamin-independent synthase, Catalytic domain D1099_01685 PF01053 Cys/Met metabolism PLP-dependent enzyme D1099_01690 PF02600 Disulfide bond formation protein DsbB D1099_01695 PF06450 Bacterial Na+/H+ antiporter B (NhaB) D1099_01700 PF07840 FadR C-terminal domain D1099_01700 PF00392 Bacterial regulatory proteins, gntR family D1099_01705 PF02562 PhoH-like protein D1099_01740 PF02146 Sir2 family D1099_01760 PF02146 Sir2 family D1099_01785 PF00293 NUDIX domain D1099_01790 PF01494 FAD binding domain D1099_01810 PF01494 FAD binding domain D1099_01815 PF03668 P-loop ATPase protein family D1099_01820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1099_01825 PF00005 ABC transporter D1099_01825 PF12399 Branched-chain amino acid ATP-binding cassette transporter D1099_01830 PF03968 OstA-like protein D1099_01840 PF00311 Phosphoenolpyruvate carboxylase D1099_01845 PF04536 TPM domain D1099_01855 PF04011 LemA family D1099_01860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D1099_01865 PF00294 pfkB family carbohydrate kinase D1099_01870 PF00381 PTS HPr component phosphorylation site D1099_01870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1099_01875 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D1099_01875 PF00128 Alpha amylase, catalytic domain D1099_01875 PF02806 Alpha amylase, C-terminal all-beta domain D1099_01880 PF00128 Alpha amylase, catalytic domain D1099_01880 PF18390 Glycogen debranching enzyme C-terminal domain D1099_01880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D1099_01885 PF00483 Nucleotidyl transferase D1099_01890 PF00534 Glycosyl transferases group 1 D1099_01890 PF08323 Starch synthase catalytic domain D1099_01895 PF00343 Carbohydrate phosphorylase D1099_01900 PF00334 Nucleoside diphosphate kinase D1099_01905 PF09334 tRNA synthetases class I (M) D1099_01905 PF01588 Putative tRNA binding domain D1099_01905 PF08264 Anticodon-binding domain of tRNA D1099_01910 PF13378 Enolase C-terminal domain-like D1099_01920 PF00849 RNA pseudouridylate synthase D1099_01920 PF01479 S4 domain D1099_01925 PF07690 Major Facilitator Superfamily D1099_01940 PF01261 Xylose isomerase-like TIM barrel D1099_01945 PF00877 NlpC/P60 family D1099_01950 PF00717 Peptidase S24-like D1099_01955 PF01228 Glycine radical D1099_01960 PF03167 Uracil DNA glycosylase superfamily D1099_01965 PF04393 Protein of unknown function (DUF535) D1099_01970 PF03797 Autotransporter beta-domain D1099_01970 PF00082 Subtilase family D1099_01975 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D1099_01975 PF00271 Helicase conserved C-terminal domain D1099_01975 PF04408 Helicase associated domain (HA2) D1099_01975 PF11898 Domain of unknown function (DUF3418) D1099_01975 PF00270 DEAD/DEAH box helicase D1099_01980 PF04284 Protein of unknown function (DUF441) D1099_01985 PF01025 GrpE D1099_01990 PF13416 Bacterial extracellular solute-binding protein D1099_01995 PF01554 MatE D1099_02000 PF00580 UvrD/REP helicase N-terminal domain D1099_02000 PF12705 PD-(D/E)XK nuclease superfamily D1099_02000 PF13361 UvrD-like helicase C-terminal domain D1099_02005 PF00795 Carbon-nitrogen hydrolase D1099_02010 PF00571 CBS domain D1099_02010 PF03471 Transporter associated domain D1099_02015 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D1099_02020 PF00230 Major intrinsic protein D1099_02025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1099_02025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1099_02030 PF05362 Lon protease (S16) C-terminal proteolytic domain D1099_02030 PF02190 ATP-dependent protease La (LON) substrate-binding domain D1099_02030 PF00004 ATPase family associated with various cellular activities (AAA) D1099_02035 PF07690 Major Facilitator Superfamily D1099_02040 PF03009 Glycerophosphoryl diester phosphodiesterase family D1099_02045 PF01266 FAD dependent oxidoreductase D1099_02045 PF04324 BFD-like [2Fe-2S] binding domain D1099_02050 PF00890 FAD binding domain D1099_02055 PF02754 Cysteine-rich domain D1099_02055 PF13183 4Fe-4S dicluster domain D1099_02060 PF01872 RibD C-terminal domain D1099_02060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1099_02065 PF00677 Lumazine binding domain D1099_02070 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D1099_02070 PF00925 GTP cyclohydrolase II D1099_02075 PF00885 6,7-dimethyl-8-ribityllumazine synthase D1099_02080 PF01272 Transcription elongation factor, GreA/GreB, C-term D1099_02080 PF03449 Transcription elongation factor, N-terminal D1099_02085 PF00571 CBS domain D1099_02085 PF01380 SIS domain D1099_02090 PF12404 Peptidase D1099_02090 PF00883 Cytosol aminopeptidase family, catalytic domain D1099_02095 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) D1099_02100 PF01758 Sodium Bile acid symporter family D1099_02105 PF13533 Biotin-lipoyl like D1099_02115 PF08502 LeuA allosteric (dimerisation) domain D1099_02115 PF00682 HMGL-like D1099_02120 PF04542 Sigma-70 region 2 D1099_02120 PF08281 Sigma-70, region 4 D1099_02125 PF03873 Anti sigma-E protein RseA, C-terminal domain D1099_02125 PF03872 Anti sigma-E protein RseA, N-terminal domain D1099_02135 PF13193 AMP-binding enzyme C-terminal domain D1099_02135 PF00501 AMP-binding enzyme D1099_02145 PF00398 Ribosomal RNA adenine dimethylase D1099_02150 PF09312 SurA N-terminal domain D1099_02150 PF00639 PPIC-type PPIASE domain D1099_02155 PF00156 Phosphoribosyl transferase domain D1099_02160 PF01467 Cytidylyltransferase-like D1099_02160 PF00294 pfkB family carbohydrate kinase D1099_02165 PF01926 50S ribosome-binding GTPase D1099_02165 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D1099_02170 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D1099_02170 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D1099_02170 PF01488 Shikimate / quinate 5-dehydrogenase D1099_02175 PF13291 ACT domain D1099_02175 PF04607 Region found in RelA / SpoT proteins D1099_02175 PF02824 TGS domain D1099_02180 PF13288 DXP reductoisomerase C-terminal domain D1099_02180 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D1099_02180 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D1099_02185 PF00132 Bacterial transferase hexapeptide (six repeats) D1099_02185 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D1099_02190 PF07977 FabA-like domain D1099_02195 PF00132 Bacterial transferase hexapeptide (six repeats) D1099_02195 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D1099_02205 PF01103 Surface antigen D1099_02205 PF07244 Surface antigen variable number repeat D1099_02210 PF02163 Peptidase family M50 D1099_02220 PF01255 Putative undecaprenyl diphosphate synthase D1099_02225 PF16123 Hydroxyacylglutathione hydrolase C-terminus D1099_02225 PF00753 Metallo-beta-lactamase superfamily D1099_02230 PF00480 ROK family D1099_02235 PF01569 PAP2 superfamily D1099_02240 PF01985 CRS1 / YhbY (CRM) domain D1099_02245 PF00535 Glycosyl transferase family 2 D1099_02250 PF00768 D-alanyl-D-alanine carboxypeptidase D1099_02255 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1099_02260 PF00764 Arginosuccinate synthase D1099_02265 PF00075 RNase H D1099_02270 PF02674 Colicin V production protein D1099_02275 PF00156 Phosphoribosyl transferase domain D1099_02285 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D1099_02285 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D1099_02290 PF04355 SmpA / OmlA family D1099_02295 PF04245 37-kD nucleoid-associated bacterial protein D1099_02300 PF01042 Endoribonuclease L-PSP D1099_02305 PF02578 Multi-copper polyphenol oxidoreductase laccase D1099_02315 PF07119 Protein of unknown function (DUF1375) D1099_02320 PF00180 Isocitrate/isopropylmalate dehydrogenase D1099_02325 PF01641 SelR domain D1099_02330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D1099_02330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D1099_02340 PF04085 rod shape-determining protein MreC D1099_02345 PF04093 rod shape-determining protein MreD D1099_02350 PF12002 MgsA AAA+ ATPase C terminal D1099_02350 PF16193 AAA C-terminal domain D1099_02350 PF00004 ATPase family associated with various cellular activities (AAA) D1099_02355 PF00950 ABC 3 transport family D1099_02360 PF13230 Glutamine amidotransferases class-II D1099_02365 PF00561 alpha/beta hydrolase fold D1099_02370 PF02698 DUF218 domain D1099_02380 PF02589 LUD domain D1099_02385 PF11870 Domain of unknown function (DUF3390) D1099_02385 PF13183 4Fe-4S dicluster domain D1099_02385 PF02589 LUD domain D1099_02390 PF02754 Cysteine-rich domain D1099_02395 PF02652 L-lactate permease D1099_02400 PF00816 H-NS histone family D1099_02405 PF03553 Na+/H+ antiporter family D1099_02410 PF13407 Periplasmic binding protein domain D1099_02415 PF00549 CoA-ligase D1099_02415 PF02629 CoA binding domain D1099_02420 PF08442 ATP-grasp domain D1099_02420 PF00549 CoA-ligase D1099_02425 PF04393 Protein of unknown function (DUF535) D1099_02430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1099_02430 PF02817 e3 binding domain D1099_02430 PF00364 Biotin-requiring enzyme D1099_02435 PF16870 2-oxoglutarate dehydrogenase C-terminal D1099_02435 PF00676 Dehydrogenase E1 component D1099_02435 PF16078 2-oxoglutarate dehydrogenase N-terminus D1099_02435 PF02779 Transketolase, pyrimidine binding domain D1099_02440 PF00005 ABC transporter D1099_02445 PF01551 Peptidase family M23 D1099_02445 PF04225 Opacity-associated protein A LysM-like domain D1099_02450 PF13098 Thioredoxin-like domain D1099_02450 PF10411 Disulfide bond isomerase protein N-terminus D1099_02455 PF01368 DHH family D1099_02455 PF02272 DHHA1 domain D1099_02455 PF17768 RecJ OB domain D1099_02460 PF01389 OmpA-like transmembrane domain D1099_02460 PF00691 OmpA family D1099_02470 PF00672 HAMP domain D1099_02470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1099_02470 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D1099_02470 PF07730 Histidine kinase D1099_02480 PF01725 Ham1 family D1099_02485 PF01906 Putative heavy-metal-binding D1099_02490 PF01268 Formate--tetrahydrofolate ligase D1099_02495 PF03692 Putative zinc- or iron-chelating domain D1099_02500 PF00106 short chain dehydrogenase D1099_02505 PF00291 Pyridoxal-phosphate dependent enzyme D1099_02510 PF00290 Tryptophan synthase alpha chain D1099_02515 PF12441 CopG antitoxin of type II toxin-antitoxin system D1099_02525 PF01367 5'-3' exonuclease, C-terminal SAM fold D1099_02525 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D1099_02525 PF01612 3'-5' exonuclease D1099_02525 PF00476 DNA polymerase family A D1099_02540 PF03548 Outer membrane lipoprotein carrier protein LolA D1099_02545 PF01371 Trp repressor protein D1099_02550 PF00912 Transglycosylase D1099_02555 PF02627 Carboxymuconolactone decarboxylase family D1099_02585 PF00881 Nitroreductase family D1099_02590 PF08443 RimK-like ATP-grasp domain D1099_02590 PF18030 RimK PreATP-grasp domain D1099_02595 PF02698 DUF218 domain D1099_02600 PF01515 Phosphate acetyl/butaryl transferase D1099_02600 PF03949 Malic enzyme, NAD binding domain D1099_02600 PF00390 Malic enzyme, N-terminal domain D1099_02605 PF01386 Ribosomal L25p family D1099_02650 PF04381 Putative exonuclease, RdgC D1099_02740 PF03796 DnaB-like helicase C terminal domain D1099_02740 PF00772 DnaB-like helicase N terminal domain D1099_02780 PF05106 Phage holin family (Lysis protein S) D1099_02785 PF00182 Chitinase class I D1099_02800 PF03592 Terminase small subunit D1099_02965 PF04381 Putative exonuclease, RdgC D1099_03050 PF03796 DnaB-like helicase C terminal domain D1099_03050 PF00772 DnaB-like helicase N terminal domain D1099_03090 PF05106 Phage holin family (Lysis protein S) D1099_03095 PF00182 Chitinase class I D1099_03110 PF03592 Terminase small subunit D1099_03240 PF06226 Protein of unknown function (DUF1007) D1099_03245 PF03824 High-affinity nickel-transport protein D1099_03250 PF01235 Sodium:alanine symporter family D1099_03255 PF00005 ABC transporter D1099_03260 PF00005 ABC transporter D1099_03265 PF00899 ThiF family D1099_03270 PF02597 ThiS family D1099_03280 PF04055 Radical SAM superfamily D1099_03280 PF06968 Biotin and Thiamin Synthesis associated domain D1099_03285 PF03070 TENA/THI-4/PQQC family D1099_03290 PF09084 NMT1/THI5 like D1099_03295 PF09084 NMT1/THI5 like D1099_03300 PF08543 Phosphomethylpyrimidine kinase D1099_03305 PF08543 Phosphomethylpyrimidine kinase D1099_03310 PF02581 Thiamine monophosphate synthase D1099_03315 PF06421 GTP-binding protein LepA C-terminus D1099_03315 PF03144 Elongation factor Tu domain 2 D1099_03315 PF00009 Elongation factor Tu GTP binding domain D1099_03315 PF00679 Elongation factor G C-terminus D1099_03320 PF10502 Signal peptidase, peptidase S26 D1099_03325 PF14622 Ribonuclease-III-like D1099_03325 PF00035 Double-stranded RNA binding motif D1099_03330 PF01926 50S ribosome-binding GTPase D1099_03330 PF07650 KH domain D1099_03335 PF11967 Recombination protein O N terminal D1099_03335 PF02565 Recombination protein O C terminal D1099_03370 PF00437 Type II/IV secretion system protein D1099_03385 PF13629 Pilus formation protein N terminal region D1099_03385 PF00263 Bacterial type II and III secretion system protein D1099_03385 PF04972 BON domain D1099_03400 PF07715 TonB-dependent Receptor Plug Domain D1099_03400 PF00593 TonB dependent receptor D1099_03405 PF00005 ABC transporter D1099_03405 PF06472 ABC transporter transmembrane region 2 D1099_03410 PF00318 Ribosomal protein S2 D1099_03415 PF00889 Elongation factor TS D1099_03420 PF00884 Sulfatase D1099_03425 PF00696 Amino acid kinase family D1099_03430 PF01765 Ribosome recycling factor D1099_03435 PF00392 Bacterial regulatory proteins, gntR family D1099_03435 PF00155 Aminotransferase class I and II D1099_03440 PF01680 SOR/SNZ family D1099_03445 PF01174 SNO glutamine amidotransferase family D1099_03450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1099_03455 PF00271 Helicase conserved C-terminal domain D1099_03455 PF00270 DEAD/DEAH box helicase D1099_03455 PF03880 DbpA RNA binding domain D1099_03465 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D1099_03465 PF00013 KH domain D1099_03465 PF03725 3' exoribonuclease family, domain 2 D1099_03465 PF00575 S1 RNA binding domain D1099_03465 PF01138 3' exoribonuclease family, domain 1 D1099_03470 PF00521 DNA gyrase/topoisomerase IV, subunit A D1099_03470 PF03989 DNA gyrase C-terminal domain, beta-propeller D1099_03475 PF17192 MukF middle domain D1099_03475 PF17193 MukF C-terminal domain D1099_03475 PF03882 MukF winged-helix domain D1099_03480 PF04288 MukE-like family D1099_03485 PF16330 MukB hinge domain D1099_03485 PF04310 MukB N-terminal D1099_03490 PF07690 Major Facilitator Superfamily D1099_03495 PF11893 Domain of unknown function (DUF3413) D1099_03495 PF00884 Sulfatase D1099_03500 PF07208 Protein of unknown function (DUF1414) D1099_03505 PF00440 Bacterial regulatory proteins, tetR family D1099_03510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1099_03515 PF00873 AcrB/AcrD/AcrF family D1099_03520 PF12804 MobA-like NTP transferase domain D1099_03520 PF00132 Bacterial transferase hexapeptide (six repeats) D1099_03530 PF08942 Domain of unknown function (DUF1919) D1099_03535 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1099_03535 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1099_03535 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1099_03535 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1099_03540 PF02540 NAD synthase D1099_03540 PF00958 GMP synthase C terminal domain D1099_03540 PF00117 Glutamine amidotransferase class-I D1099_03550 PF00571 CBS domain D1099_03550 PF00478 IMP dehydrogenase / GMP reductase domain D1099_03555 PF01728 FtsJ-like methyltransferase D1099_03560 PF00004 ATPase family associated with various cellular activities (AAA) D1099_03560 PF17862 AAA+ lid domain D1099_03560 PF01434 Peptidase family M41 D1099_03560 PF06480 FtsH Extracellular D1099_03565 PF03222 Tryptophan/tyrosine permease family D1099_03570 PF03222 Tryptophan/tyrosine permease family D1099_03575 PF08335 GlnD PII-uridylyltransferase D1099_03575 PF01966 HD domain D1099_03580 PF06295 Protein of unknown function (DUF1043) D1099_03585 PF00572 Ribosomal protein L13 D1099_03590 PF00380 Ribosomal protein S9/S16 D1099_03595 PF03883 Peroxide stress protein YaaA D1099_03605 PF01545 Cation efflux family D1099_03605 PF16916 Dimerisation domain of Zinc Transporter D1099_03610 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) D1099_03615 PF00375 Sodium:dicarboxylate symporter family D1099_03620 PF00881 Nitroreductase family D1099_03625 PF01409 tRNA synthetases class II core domain (F) D1099_03625 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D1099_03630 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D1099_03630 PF01588 Putative tRNA binding domain D1099_03630 PF03147 Ferredoxin-fold anticodon binding domain D1099_03630 PF03483 B3/4 domain D1099_03630 PF03484 tRNA synthetase B5 domain D1099_03635 PF00216 Bacterial DNA-binding protein D1099_03640 PF00877 NlpC/P60 family D1099_03655 PF00480 ROK family D1099_03655 PF01047 MarR family D1099_03660 PF00570 HRDC domain D1099_03660 PF01612 3'-5' exonuclease D1099_03665 PF01037 Lrp/AsnC ligand binding domain D1099_03670 PF01580 FtsK/SpoIIIE family D1099_03670 PF09397 Ftsk gamma domain D1099_03670 PF17854 FtsK alpha domain D1099_03670 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D1099_03675 PF04228 Putative neutral zinc metallopeptidase D1099_03680 PF00793 DAHP synthetase I family D1099_03685 PF00814 Glycoprotease family D1099_03690 PF00265 Thymidine kinase D1099_03695 PF06005 Cell division protein ZapB D1099_03700 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D1099_03705 PF01784 NIF3 (NGG1p interacting factor 3) D1099_03710 PF00005 ABC transporter D1099_03710 PF02687 FtsX-like permease family D1099_03710 PF12704 MacB-like periplasmic core domain D1099_03720 PF00486 Transcriptional regulatory protein, C terminal D1099_03720 PF00072 Response regulator receiver domain D1099_03725 PF03819 MazG nucleotide pyrophosphohydrolase domain D1099_03730 PF01039 Carboxyl transferase domain D1099_03730 PF17848 Acetyl-coA carboxylase zinc finger domain D1099_03735 PF08245 Mur ligase middle domain D1099_03745 PF17384 RimP C-terminal SH3 domain D1099_03745 PF02576 RimP N-terminal domain D1099_03750 PF00575 S1 RNA binding domain D1099_03750 PF08529 NusA N-terminal domain D1099_03750 PF13184 NusA-like KH domain D1099_03755 PF04760 Translation initiation factor IF-2, N-terminal region D1099_03755 PF11987 Translation-initiation factor 2 D1099_03755 PF00009 Elongation factor Tu GTP binding domain D1099_03760 PF02033 Ribosome-binding factor A D1099_03765 PF01509 TruB family pseudouridylate synthase (N terminal domain) D1099_03765 PF16198 tRNA pseudouridylate synthase B C-terminal domain D1099_03765 PF09157 Pseudouridine synthase II TruB, C-terminal D1099_03770 PF13406 Transglycosylase SLT domain D1099_03775 PF07411 Domain of unknown function (DUF1508) D1099_03780 PF07085 DRTGG domain D1099_03780 PF01515 Phosphate acetyl/butaryl transferase D1099_03785 PF00871 Acetokinase family D1099_03790 PF02872 5'-nucleotidase, C-terminal domain D1099_03790 PF00149 Calcineurin-like phosphoesterase D1099_03805 PF13609 Gram-negative porin D1099_03815 PF00483 Nucleotidyl transferase D1099_03820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1099_03820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1099_03820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1099_03820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1099_03825 PF02599 Global regulator protein family D1099_03830 PF01411 tRNA synthetases class II (A) D1099_03830 PF02272 DHHA1 domain D1099_03830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D1099_03835 PF00582 Universal stress protein family D1099_03840 PF00325 Bacterial regulatory proteins, crp family D1099_03840 PF00027 Cyclic nucleotide-binding domain D1099_03845 PF04386 Stringent starvation protein B D1099_03850 PF02798 Glutathione S-transferase, N-terminal domain D1099_03850 PF00043 Glutathione S-transferase, C-terminal domain D1099_03855 PF00731 AIR carboxylase D1099_03860 PF17763 Glutaminase/Asparaginase C-terminal domain D1099_03860 PF00710 Asparaginase, N-terminal D1099_03865 PF02222 ATP-grasp domain D1099_03865 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D1099_03870 PF00155 Aminotransferase class I and II D1099_03880 PF05195 Aminopeptidase P, N-terminal domain D1099_03880 PF00557 Metallopeptidase family M24 D1099_03890 PF17757 UvrB interaction domain D1099_03890 PF12344 Ultra-violet resistance protein B D1099_03890 PF02151 UvrB/uvrC motif D1099_03890 PF04851 Type III restriction enzyme, res subunit D1099_03890 PF00271 Helicase conserved C-terminal domain D1099_03895 PF09375 Imelysin D1099_03900 PF10518 TAT (twin-arginine translocation) pathway signal sequence D1099_03900 PF04261 Dyp-type peroxidase family D1099_03910 PF02811 PHP domain D1099_03920 PF00929 Exonuclease D1099_03920 PF08411 Exonuclease C-terminal D1099_03925 PF00654 Voltage gated chloride channel D1099_03930 PF01336 OB-fold nucleic acid binding domain D1099_03930 PF00152 tRNA synthetases class II (D, K and N) D1099_03935 PF04055 Radical SAM superfamily D1099_03945 PF09285 Elongation factor P, C-terminal D1099_03945 PF08207 Elongation factor P (EF-P) KOW-like domain D1099_03945 PF01132 Elongation factor P (EF-P) OB domain D1099_03965 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D1099_03965 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1099_03980 PF14718 Soluble lytic murein transglycosylase L domain D1099_03980 PF01464 Transglycosylase SLT domain D1099_03985 PF00156 Phosphoribosyl transferase domain D1099_03990 PF01053 Cys/Met metabolism PLP-dependent enzyme D1099_03995 PF05173 Dihydrodipicolinate reductase, C-terminus D1099_03995 PF01113 Dihydrodipicolinate reductase, N-terminus D1099_04010 PF01728 FtsJ-like methyltransferase D1099_04010 PF18125 RlmM ferredoxin-like domain D1099_04015 PF04241 Protein of unknown function (DUF423) D1099_04020 PF01565 FAD binding domain D1099_04020 PF09330 D-lactate dehydrogenase, membrane binding D1099_04025 PF00384 Molybdopterin oxidoreductase D1099_04025 PF18364 Molybdopterin oxidoreductase N-terminal domain D1099_04025 PF01568 Molydopterin dinucleotide binding domain D1099_04030 PF03264 NapC/NirT cytochrome c family, N-terminal region D1099_04035 PF06463 Molybdenum Cofactor Synthesis C D1099_04035 PF04055 Radical SAM superfamily D1099_04040 PF01967 MoaC family D1099_04045 PF02597 ThiS family D1099_04050 PF02391 MoaE protein D1099_04055 PF02130 Uncharacterized protein family UPF0054 D1099_04060 PF05127 Helicase D1099_04060 PF17176 tRNA-binding domain D1099_04060 PF13718 GNAT acetyltransferase 2 D1099_04065 PF01751 Toprim domain D1099_04065 PF01396 Topoisomerase DNA binding C4 zinc finger D1099_04065 PF08272 Topoisomerase I zinc-ribbon-like D1099_04065 PF01131 DNA topoisomerase D1099_04070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_04070 PF03466 LysR substrate binding domain D1099_04075 PF00583 Acetyltransferase (GNAT) family D1099_04075 PF00696 Amino acid kinase family D1099_04080 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1099_04085 PF00155 Aminotransferase class I and II D1099_04090 PF01053 Cys/Met metabolism PLP-dependent enzyme D1099_04095 PF00266 Aminotransferase class-V D1099_04100 PF00271 Helicase conserved C-terminal domain D1099_04100 PF00176 SNF2 family N-terminal domain D1099_04110 PF01555 DNA methylase D1099_04115 PF01380 SIS domain D1099_04115 PF01418 Helix-turn-helix domain, rpiR family D1099_04120 PF04074 YhcH/YjgK/YiaL D1099_04125 PF02541 Ppx/GppA phosphatase family D1099_04130 PF04363 Protein of unknown function (DUF496) D1099_04135 PF01842 ACT domain D1099_04135 PF00696 Amino acid kinase family D1099_04140 PF03477 ATP cone domain D1099_04145 PF05166 YcgL domain D1099_04150 PF03796 DnaB-like helicase C terminal domain D1099_04150 PF00772 DnaB-like helicase N terminal domain D1099_04155 PF01497 Periplasmic binding protein D1099_04160 PF01032 FecCD transport family D1099_04165 PF01032 FecCD transport family D1099_04170 PF00005 ABC transporter D1099_04175 PF01865 Protein of unknown function DUF47 D1099_04180 PF01384 Phosphate transporter family D1099_04185 PF08239 Bacterial SH3 domain D1099_04195 PF01814 Hemerythrin HHE cation binding domain D1099_04200 PF01702 Queuine tRNA-ribosyltransferase D1099_04210 PF00313 'Cold-shock' DNA-binding domain D1099_04215 PF00484 Carbonic anhydrase D1099_04220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1099_04220 PF00205 Thiamine pyrophosphate enzyme, central domain D1099_04220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1099_04225 PF10369 Small subunit of acetolactate synthase D1099_04230 PF01523 Putative modulator of DNA gyrase D1099_04235 PF04751 Protein of unknown function (DUF615) D1099_04240 PF04247 Invasion gene expression up-regulator, SirB D1099_04245 PF02441 Flavoprotein D1099_04250 PF04474 Protein of unknown function (DUF554) D1099_04260 PF01253 Translation initiation factor SUI1 D1099_04265 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1099_04270 PF18073 Rubredoxin metal binding domain D1099_04275 PF06305 Lipopolysaccharide assembly protein A domain D1099_04280 PF00216 Bacterial DNA-binding protein D1099_04285 PF00575 S1 RNA binding domain D1099_04290 PF02224 Cytidylate kinase D1099_04295 PF13180 PDZ domain D1099_04305 PF03840 Preprotein translocase SecG subunit D1099_04310 PF01131 DNA topoisomerase D1099_04310 PF01751 Toprim domain D1099_04315 PF00245 Alkaline phosphatase D1099_04320 PF03411 Penicillin-insensitive murein endopeptidase D1099_04325 PF01264 Chorismate synthase D1099_04330 PF00924 Mechanosensitive ion channel D1099_04330 PF12795 Mechanosensitive ion channel porin domain D1099_04330 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1099_04335 PF12794 Mechanosensitive ion channel inner membrane domain 1 D1099_04335 PF12795 Mechanosensitive ion channel porin domain D1099_04335 PF00924 Mechanosensitive ion channel D1099_04340 PF00501 AMP-binding enzyme D1099_04345 PF17206 SeqA protein N-terminal domain D1099_04345 PF03925 SeqA protein C-terminal domain D1099_04350 PF00561 alpha/beta hydrolase fold D1099_04355 PF13649 Methyltransferase domain D1099_04375 PF08206 Ribonuclease B OB domain D1099_04375 PF00773 RNB domain D1099_04375 PF00575 S1 RNA binding domain D1099_04380 PF03788 LrgA family D1099_04385 PF04172 LrgB-like family D1099_04390 PF00149 Calcineurin-like phosphoesterase D1099_04400 PF00589 Phage integrase family D1099_04400 PF13356 Arm DNA-binding domain D1099_04450 PF03354 Phage Terminase D1099_04490 PF03889 Alternative ribosome-rescue factor A D1099_04495 PF13649 Methyltransferase domain D1099_04500 PF01594 AI-2E family transporter D1099_04505 PF01933 Uncharacterised protein family UPF0052 D1099_04510 PF02547 Queuosine biosynthesis protein D1099_04515 PF00753 Metallo-beta-lactamase superfamily D1099_04515 PF13567 Domain of unknown function (DUF4131) D1099_04515 PF03772 Competence protein D1099_04520 PF00375 Sodium:dicarboxylate symporter family D1099_04525 PF01219 Prokaryotic diacylglycerol kinase D1099_04530 PF00149 Calcineurin-like phosphoesterase D1099_04530 PF02872 5'-nucleotidase, C-terminal domain D1099_04550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1099_04550 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1099_04555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D1099_04555 PF02817 e3 binding domain D1099_04555 PF00364 Biotin-requiring enzyme D1099_04560 PF00456 Transketolase, thiamine diphosphate binding domain D1099_04560 PF17831 Pyruvate dehydrogenase E1 component middle domain D1099_04565 PF01180 Dihydroorotate dehydrogenase D1099_04570 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D1099_04570 PF14572 Phosphoribosyl synthetase-associated domain D1099_04575 PF08544 GHMP kinases C terminal D1099_04575 PF00288 GHMP kinases N terminal domain D1099_04580 PF03550 Outer membrane lipoprotein LolB D1099_04585 PF00005 ABC transporter D1099_04585 PF00664 ABC transporter transmembrane region D1099_04590 PF04172 LrgB-like family D1099_04600 PF13307 Helicase C-terminal domain D1099_04600 PF06733 DEAD_2 D1099_04610 PF17760 UvrA interaction domain D1099_04610 PF17755 UvrA DNA-binding domain D1099_04615 PF00436 Single-strand binding protein family D1099_04645 PF03466 LysR substrate binding domain D1099_04645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_04650 PF03060 Nitronate monooxygenase D1099_04660 PF04237 YjbR D1099_04665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1099_04665 PF00005 ABC transporter D1099_04670 PF12911 N-terminal TM domain of oligopeptide transport permease C D1099_04670 PF00528 Binding-protein-dependent transport system inner membrane component D1099_04675 PF00528 Binding-protein-dependent transport system inner membrane component D1099_04680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1099_04685 PF00158 Sigma-54 interaction domain D1099_04685 PF18024 Helix-turn-helix domain D1099_04690 PF13580 SIS domain D1099_04695 PF01293 Phosphoenolpyruvate carboxykinase D1099_04700 PF04977 Septum formation initiator D1099_04705 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D1099_04710 PF02542 YgbB family D1099_04720 PF00884 Sulfatase D1099_04725 PF00111 2Fe-2S iron-sulfur cluster binding domain D1099_04725 PF03473 MOSC domain D1099_04725 PF03476 MOSC N-terminal beta barrel domain D1099_04730 PF02609 Exonuclease VII small subunit D1099_04735 PF00348 Polyprenyl synthetase D1099_04745 PF01336 OB-fold nucleic acid binding domain D1099_04745 PF00152 tRNA synthetases class II (D, K and N) D1099_04750 PF10150 Ribonuclease E/G family D1099_04750 PF00575 S1 RNA binding domain D1099_04755 PF18381 YcaO cyclodehydratase C-terminal domain D1099_04755 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding D1099_04760 PF04851 Type III restriction enzyme, res subunit D1099_04760 PF08774 VRR-NUC domain D1099_04765 PF01555 DNA methylase D1099_04765 PF18273 Type III R-M EcoP15I C-terminal domain D1099_04770 PF08003 Protein of unknown function (DUF1698) D1099_04780 PF06725 3D domain D1099_04780 PF03562 MltA specific insert domain D1099_04790 PF13742 OB-fold nucleic acid binding domain D1099_04790 PF02601 Exonuclease VII, large subunit D1099_04805 PF03796 DnaB-like helicase C terminal domain D1099_04805 PF00772 DnaB-like helicase N terminal domain D1099_04835 PF00436 Single-strand binding protein family D1099_04850 PF01751 Toprim domain D1099_04850 PF01131 DNA topoisomerase D1099_05035 PF00239 Resolvase, N terminal domain D1099_05035 PF02796 Helix-turn-helix domain of resolvase D1099_05045 PF00589 Phage integrase family D1099_05055 PF00576 HIUase/Transthyretin family D1099_05060 PF00356 Bacterial regulatory proteins, lacI family D1099_05060 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D1099_05065 PF09335 SNARE associated Golgi protein D1099_05070 PF00204 DNA gyrase B D1099_05070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1099_05070 PF00986 DNA gyrase B subunit, carboxyl terminus D1099_05070 PF01751 Toprim domain D1099_05070 PF18053 DNA gyrase B subunit insert domain D1099_05075 PF01040 UbiA prenyltransferase family D1099_05080 PF00455 DeoR C terminal sensor domain D1099_05080 PF08220 DeoR-like helix-turn-helix domain D1099_05085 PF08328 Adenylosuccinate lyase C-terminal D1099_05085 PF00206 Lyase D1099_05090 PF04356 Protein of unknown function (DUF489) D1099_05095 PF00664 ABC transporter transmembrane region D1099_05095 PF00005 ABC transporter D1099_05100 PF00664 ABC transporter transmembrane region D1099_05100 PF00005 ABC transporter D1099_05105 PF04357 TamB, inner membrane protein subunit of TAM complex D1099_05110 PF01103 Surface antigen D1099_05110 PF17243 POTRA domain TamA domain 1 D1099_05115 PF04748 Divergent polysaccharide deacetylase D1099_05120 PF01551 Peptidase family M23 D1099_05125 PF00300 Histidine phosphatase superfamily (branch 1) D1099_05130 PF01810 LysE type translocator D1099_05135 PF00485 Phosphoribulokinase / Uridine kinase family D1099_05140 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) D1099_05145 PF00440 Bacterial regulatory proteins, tetR family D1099_05145 PF14278 Transcriptional regulator C-terminal region D1099_05150 PF13533 Biotin-lipoyl like D1099_05155 PF00005 ABC transporter D1099_05165 PF02321 Outer membrane efflux protein D1099_05170 PF02233 NAD(P) transhydrogenase beta subunit D1099_05175 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D1099_05175 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D1099_05175 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D1099_05180 PF00588 SpoU rRNA Methylase family D1099_05195 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D1099_05195 PF14489 QueF-like protein D1099_05205 PF00578 AhpC/TSA family D1099_05210 PF04055 Radical SAM superfamily D1099_05210 PF06969 HemN C-terminal domain D1099_05215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1099_05220 PF00528 Binding-protein-dependent transport system inner membrane component D1099_05225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1099_05225 PF00005 ABC transporter D1099_05230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D1099_05230 PF00005 ABC transporter D1099_05235 PF00890 FAD binding domain D1099_05240 PF01717 Cobalamin-independent synthase, Catalytic domain D1099_05245 PF02219 Methylenetetrahydrofolate reductase D1099_05250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1099_05255 PF03222 Tryptophan/tyrosine permease family D1099_05260 PF03315 Serine dehydratase beta chain D1099_05260 PF03313 Serine dehydratase alpha chain D1099_05265 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D1099_05265 PF01266 FAD dependent oxidoreductase D1099_05270 PF00218 Indole-3-glycerol phosphate synthase D1099_05270 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D1099_05275 PF02661 Fic/DOC family D1099_05275 PF12728 Helix-turn-helix domain D1099_05280 PF04287 tRNA pseudouridine synthase C D1099_05285 PF00849 RNA pseudouridylate synthase D1099_05290 PF03701 Uncharacterised protein family (UPF0181) D1099_05300 PF01928 CYTH domain D1099_05305 PF04317 YcjX-like family, DUF463 D1099_05310 PF01668 SmpB protein D1099_05315 PF02403 Seryl-tRNA synthetase N-terminal domain D1099_05315 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1099_05320 PF07687 Peptidase dimerisation domain D1099_05320 PF01546 Peptidase family M20/M25/M40 D1099_05325 PF03606 C4-dicarboxylate anaerobic carrier D1099_05330 PF03575 Peptidase family S51 D1099_05335 PF13603 Leucyl-tRNA synthetase, Domain 2 D1099_05335 PF00133 tRNA synthetases class I (I, L, M and V) D1099_05335 PF08264 Anticodon-binding domain of tRNA D1099_05340 PF04390 Lipopolysaccharide-assembly D1099_05345 PF06144 DNA polymerase III, delta subunit D1099_05345 PF14840 Processivity clamp loader gamma complex DNA pol III C-term D1099_05350 PF03884 DNA gyrase inhibitor YacG D1099_05355 PF01121 Dephospho-CoA kinase D1099_05365 PF00482 Type II secretion system (T2SS), protein F D1099_05370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D1099_05370 PF00437 Type II/IV secretion system protein D1099_05375 PF07963 Prokaryotic N-terminal methylation motif D1099_05380 PF18073 Rubredoxin metal binding domain D1099_05390 PF00186 Dihydrofolate reductase D1099_05395 PF01472 PUA domain D1099_05395 PF00696 Amino acid kinase family D1099_05400 PF01925 Sulfite exporter TauE/SafE D1099_05405 PF00730 HhH-GPD superfamily base excision DNA repair protein D1099_05405 PF00633 Helix-hairpin-helix motif D1099_05405 PF10576 Iron-sulfur binding domain of endonuclease III D1099_05410 PF00108 Thiolase, N-terminal domain D1099_05410 PF02803 Thiolase, C-terminal domain D1099_05415 PF00378 Enoyl-CoA hydratase/isomerase D1099_05415 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D1099_05415 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D1099_05430 PF02634 FdhD/NarQ family D1099_05435 PF01568 Molydopterin dinucleotide binding domain D1099_05435 PF00384 Molybdopterin oxidoreductase D1099_05435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1099_05440 PF00384 Molybdopterin oxidoreductase D1099_05440 PF01568 Molydopterin dinucleotide binding domain D1099_05440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1099_05445 PF13247 4Fe-4S dicluster domain D1099_05445 PF09163 Formate dehydrogenase N, transmembrane D1099_05450 PF01292 Prokaryotic cytochrome b561 D1099_05455 PF04216 Protein involved in formate dehydrogenase formation D1099_05470 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D1099_05470 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D1099_05480 PF00701 Dihydrodipicolinate synthetase family D1099_05485 PF03279 Bacterial lipid A biosynthesis acyltransferase D1099_05490 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D1099_05495 PF01416 tRNA pseudouridine synthase D1099_05500 PF01227 GTP cyclohydrolase I D1099_05515 PF12464 Maltose acetyltransferase D1099_05515 PF14602 Hexapeptide repeat of succinyl-transferase D1099_05520 PF02129 X-Pro dipeptidyl-peptidase (S15 family) D1099_05525 PF03466 LysR substrate binding domain D1099_05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_05530 PF03180 NLPA lipoprotein D1099_05535 PF03180 NLPA lipoprotein D1099_05540 PF00528 Binding-protein-dependent transport system inner membrane component D1099_05545 PF09383 NIL domain D1099_05545 PF00005 ABC transporter D1099_05550 PF01406 tRNA synthetases class I (C) catalytic domain D1099_05550 PF09190 DALR domain D1099_05555 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1099_05560 PF12627 Probable RNA and SrmB- binding site of polymerase A D1099_05560 PF01966 HD domain D1099_05560 PF01743 Poly A polymerase head domain D1099_05570 PF00593 TonB dependent receptor D1099_05570 PF07715 TonB-dependent Receptor Plug Domain D1099_05590 PF04384 Iron-sulphur cluster assembly D1099_05595 PF00111 2Fe-2S iron-sulfur cluster binding domain D1099_05600 PF00012 Hsp70 protein D1099_05605 PF10946 Protein of unknown function DUF2625 D1099_05615 PF07743 HSCB C-terminal oligomerisation domain D1099_05620 PF01521 Iron-sulphur cluster biosynthesis D1099_05625 PF01592 NifU-like N terminal domain D1099_05630 PF00266 Aminotransferase class-V D1099_05635 PF02082 Transcriptional regulator D1099_05640 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D1099_05645 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D1099_05645 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D1099_05650 PF00072 Response regulator receiver domain D1099_05650 PF00989 PAS fold D1099_05650 PF01627 Hpt domain D1099_05650 PF18415 Histidine kinase receptor ArcB trans-membrane domain D1099_05650 PF00512 His Kinase A (phospho-acceptor) domain D1099_05650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1099_05660 PF01713 Smr domain D1099_05670 PF08241 Methyltransferase domain D1099_05675 PF04301 Protein of unknown function (DUF452) D1099_05680 PF00155 Aminotransferase class I and II D1099_05685 PF00202 Aminotransferase class-III D1099_05690 PF05175 Methyltransferase small domain D1099_05695 PF03449 Transcription elongation factor, N-terminal D1099_05695 PF01272 Transcription elongation factor, GreA/GreB, C-term D1099_05700 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D1099_05730 PF06114 IrrE N-terminal-like domain D1099_05735 PF01381 Helix-turn-helix D1099_05755 PF03412 Peptidase C39 family D1099_05755 PF00005 ABC transporter D1099_05755 PF00664 ABC transporter transmembrane region D1099_05760 PF08339 RTX C-terminal domain D1099_05760 PF02382 N-terminal domain in RTX protein D1099_05760 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1099_05765 PF02794 RTX toxin acyltransferase family D1099_05775 PF02130 Uncharacterized protein family UPF0054 D1099_05780 PF01808 AICARFT/IMPCHase bienzyme D1099_05780 PF02142 MGS-like domain D1099_05805 PF04829 Pre-toxin domain with VENN motif D1099_05805 PF05860 haemagglutination activity domain D1099_05805 PF13332 Hemagglutinin repeat D1099_05815 PF04829 Pre-toxin domain with VENN motif D1099_05815 PF13332 Hemagglutinin repeat D1099_05815 PF13018 Extended Signal Peptide of Type V secretion system D1099_05815 PF05860 haemagglutination activity domain D1099_05825 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB D1099_05825 PF17287 POTRA domain D1099_05825 PF08479 POTRA domain, ShlB-type D1099_05830 PF03968 OstA-like protein D1099_05830 PF04453 LPS transport system D D1099_05835 PF04055 Radical SAM superfamily D1099_05835 PF06969 HemN C-terminal domain D1099_05845 PF04220 Der GTPase activator (YihI) D1099_05850 PF06826 Predicted Permease Membrane Region D1099_05850 PF02080 TrkA-C domain D1099_05855 PF03616 Sodium/glutamate symporter D1099_05860 PF06062 Uncharacterised protein family (UPF0231) D1099_05865 PF08335 GlnD PII-uridylyltransferase D1099_05865 PF03710 Glutamate-ammonia ligase adenylyltransferase D1099_05870 PF03795 YCII-related domain D1099_05875 PF03061 Thioesterase superfamily D1099_05880 PF04279 Intracellular septation protein A D1099_05890 PF04217 Protein of unknown function, DUF412 D1099_05895 PF01171 PP-loop family D1099_05900 PF13726 Na+-H+ antiporter family D1099_05900 PF03553 Na+/H+ antiporter family D1099_05905 PF03372 Endonuclease/Exonuclease/phosphatase family D1099_05910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_05910 PF03466 LysR substrate binding domain D1099_05920 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1099_05935 PF01197 Ribosomal protein L31 D1099_05940 PF00456 Transketolase, thiamine diphosphate binding domain D1099_05940 PF02780 Transketolase, C-terminal domain D1099_05940 PF02779 Transketolase, pyrimidine binding domain D1099_05945 PF00183 Hsp90 protein D1099_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1099_05950 PF06628 Catalase-related immune-responsive D1099_05950 PF00199 Catalase D1099_05960 PF00149 Calcineurin-like phosphoesterase D1099_05965 PF02867 Ribonucleotide reductase, barrel domain D1099_05965 PF00317 Ribonucleotide reductase, all-alpha domain D1099_05965 PF03477 ATP cone domain D1099_05970 PF00268 Ribonucleotide reductase, small chain D1099_05975 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D1099_05975 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D1099_05980 PF00288 GHMP kinases N terminal domain D1099_05980 PF08544 GHMP kinases C terminal D1099_05980 PF10509 Galactokinase galactose-binding signature D1099_05985 PF01263 Aldose 1-epimerase D1099_05990 PF02929 Beta galactosidase small chain D1099_05990 PF16353 Domain of unknown function(DUF4981) D1099_05990 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D1099_05990 PF02837 Glycosyl hydrolases family 2, sugar binding domain D1099_05990 PF00703 Glycosyl hydrolases family 2 D1099_05995 PF06594 Haemolysin-type calcium binding protein related domain D1099_05995 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1099_06005 PF10609 NUBPL iron-transfer P-loop NTPase D1099_06015 PF01914 MarC family integral membrane protein D1099_06020 PF13145 PPIC-type PPIASE domain D1099_06025 PF00999 Sodium/hydrogen exchanger family D1099_06030 PF00312 Ribosomal protein S15 D1099_06035 PF05661 Protein of unknown function (DUF808) D1099_06040 PF07219 HemY protein N-terminus D1099_06045 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D1099_06050 PF02602 Uroporphyrinogen-III synthase HemD D1099_06055 PF03900 Porphobilinogen deaminase, C-terminal domain D1099_06055 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D1099_06060 PF00171 Aldehyde dehydrogenase family D1099_06060 PF00465 Iron-containing alcohol dehydrogenase D1099_06065 PF00118 TCP-1/cpn60 chaperonin family D1099_06070 PF00166 Chaperonin 10 Kd subunit D1099_06075 PF01048 Phosphorylase superfamily D1099_06080 PF01791 DeoC/LacD family aldolase D1099_06085 PF01773 Na+ dependent nucleoside transporter N-terminus D1099_06085 PF07662 Na+ dependent nucleoside transporter C-terminus D1099_06085 PF07670 Nucleoside recognition D1099_06095 PF01081 KDPG and KHG aldolase D1099_06100 PF00294 pfkB family carbohydrate kinase D1099_06105 PF02614 Glucuronate isomerase D1099_06115 PF07729 FCD domain D1099_06115 PF00392 Bacterial regulatory proteins, gntR family D1099_06125 PF01641 SelR domain D1099_06125 PF01625 Peptide methionine sulfoxide reductase D1099_06130 PF00535 Glycosyl transferase family 2 D1099_06135 PF00535 Glycosyl transferase family 2 D1099_06145 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D1099_06155 PF04230 Polysaccharide pyruvyl transferase D1099_06160 PF02698 DUF218 domain D1099_06165 PF00270 DEAD/DEAH box helicase D1099_06165 PF00271 Helicase conserved C-terminal domain D1099_06165 PF17764 3′ DNA-binding domain (3′BD) D1099_06165 PF18074 Primosomal protein N C-terminal domain D1099_06165 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D1099_06170 PF00800 Prephenate dehydratase D1099_06170 PF01817 Chorismate mutase type II D1099_06175 PF01432 Peptidase family M3 D1099_06180 PF04055 Radical SAM superfamily D1099_06185 PF02901 Pyruvate formate lyase-like D1099_06185 PF01228 Glycine radical D1099_06190 PF01226 Formate/nitrite transporter D1099_06200 PF01435 Peptidase family M48 D1099_06205 PF00817 impB/mucB/samB family D1099_06205 PF11798 IMS family HHH motif D1099_06205 PF11799 impB/mucB/samB family C-terminal domain D1099_06210 PF03956 Lysine exporter LysO D1099_06215 PF00425 chorismate binding enzyme D1099_06220 PF00155 Aminotransferase class I and II D1099_06225 PF00892 EamA-like transporter family D1099_06230 PF00892 EamA-like transporter family D1099_06235 PF01810 LysE type translocator D1099_06240 PF07715 TonB-dependent Receptor Plug Domain D1099_06240 PF00593 TonB dependent receptor D1099_06240 PF04886 PT repeat D1099_06245 PF01243 Pyridoxamine 5'-phosphate oxidase D1099_06255 PF03918 Cytochrome C biogenesis protein D1099_06260 PF08534 Redoxin D1099_06265 PF01578 Cytochrome C assembly protein D1099_06265 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1099_06270 PF02254 TrkA-N domain D1099_06270 PF00999 Sodium/hydrogen exchanger family D1099_06275 PF01295 Adenylate cyclase, class-I D1099_06275 PF12633 Adenylate cyclase NT domain D1099_06280 PF02801 Beta-ketoacyl synthase, C-terminal domain D1099_06280 PF00109 Beta-ketoacyl synthase, N-terminal domain D1099_06290 PF04076 Bacterial OB fold (BOF) protein D1099_06305 PF00072 Response regulator receiver domain D1099_06305 PF00486 Transcriptional regulatory protein, C terminal D1099_06310 PF08521 Two-component sensor kinase N-terminal D1099_06310 PF00512 His Kinase A (phospho-acceptor) domain D1099_06310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1099_06315 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) D1099_06320 PF02699 Preprotein translocase subunit D1099_06325 PF02355 Protein export membrane protein D1099_06325 PF13721 SecD export protein N-terminal TM region D1099_06325 PF07549 SecD/SecF GG Motif D1099_06330 PF02355 Protein export membrane protein D1099_06330 PF07549 SecD/SecF GG Motif D1099_06335 PF00210 Ferritin-like domain D1099_06340 PF00210 Ferritin-like domain D1099_06345 PF00860 Permease family D1099_06350 PF02545 Maf-like protein D1099_06360 PF02926 THUMP domain D1099_06360 PF02568 Thiamine biosynthesis protein (ThiI) D1099_06365 PF00709 Adenylosuccinate synthetase D1099_06370 PF01145 SPFH domain / Band 7 family D1099_06375 PF01145 SPFH domain / Band 7 family D1099_06380 PF00085 Thioredoxin D1099_06385 PF00860 Permease family D1099_06390 PF00438 S-adenosylmethionine synthetase, N-terminal domain D1099_06390 PF02772 S-adenosylmethionine synthetase, central domain D1099_06390 PF02773 S-adenosylmethionine synthetase, C-terminal domain D1099_06400 PF13520 Amino acid permease D1099_06405 PF13520 Amino acid permease D1099_06415 PF01546 Peptidase family M20/M25/M40 D1099_06415 PF07687 Peptidase dimerisation domain D1099_06420 PF03922 OmpW family D1099_06425 PF10431 C-terminal, D2-small domain, of ClpB protein D1099_06425 PF17871 AAA lid domain D1099_06425 PF02861 Clp amino terminal domain, pathogenicity island component D1099_06425 PF07724 AAA domain (Cdc48 subfamily) D1099_06425 PF00004 ATPase family associated with various cellular activities (AAA) D1099_06435 PF03960 ArsC family D1099_06445 PF00206 Lyase D1099_06445 PF10415 Fumarase C C-terminus D1099_06455 PF00586 AIR synthase related protein, N-terminal domain D1099_06455 PF02769 AIR synthase related protein, C-terminal domain D1099_06460 PF07501 G5 domain D1099_06460 PF00746 LPXTG cell wall anchor motif D1099_06460 PF04650 YSIRK type signal peptide D1099_06460 PF00728 Glycosyl hydrolase family 20, catalytic domain D1099_06465 PF06508 Queuosine biosynthesis protein QueC D1099_06470 PF01242 6-pyruvoyl tetrahydropterin synthase D1099_06475 PF04055 Radical SAM superfamily D1099_06490 PF02789 Cytosol aminopeptidase family, N-terminal domain D1099_06490 PF00883 Cytosol aminopeptidase family, catalytic domain D1099_06500 PF03739 Lipopolysaccharide export system permease LptF/LptG D1099_06505 PF03739 Lipopolysaccharide export system permease LptF/LptG D1099_06510 PF01336 OB-fold nucleic acid binding domain D1099_06510 PF02811 PHP domain D1099_06510 PF14579 Helix-hairpin-helix motif D1099_06510 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D1099_06510 PF07733 Bacterial DNA polymerase III alpha NTPase domain D1099_06530 PF01370 NAD dependent epimerase/dehydratase family D1099_06530 PF02222 ATP-grasp domain D1099_06535 PF01553 Acyltransferase D1099_06540 PF00717 Peptidase S24-like D1099_06540 PF01726 LexA DNA binding domain D1099_06545 PF02976 DNA mismatch repair enzyme MutH D1099_06550 PF03741 Integral membrane protein TerC family D1099_06555 PF00933 Glycosyl hydrolase family 3 N terminal domain D1099_06560 PF05958 tRNA (Uracil-5-)-methyltransferase D1099_06565 PF03952 Enolase, N-terminal domain D1099_06565 PF00113 Enolase, C-terminal TIM barrel domain D1099_06570 PF00293 NUDIX domain D1099_06575 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) D1099_06580 PF09382 RQC domain D1099_06580 PF16124 RecQ zinc-binding D1099_06580 PF00570 HRDC domain D1099_06580 PF00271 Helicase conserved C-terminal domain D1099_06580 PF00270 DEAD/DEAH box helicase D1099_06585 PF01491 Frataxin-like domain D1099_06595 PF00814 Glycoprotease family D1099_06600 PF13525 Outer membrane lipoprotein D1099_06605 PF01479 S4 domain D1099_06605 PF00849 RNA pseudouridylate synthase D1099_06610 PF14256 YwiC-like protein D1099_06615 PF00365 Phosphofructokinase D1099_06620 PF00266 Aminotransferase class-V D1099_06625 PF00565 Staphylococcal nuclease homologue D1099_06630 PF01235 Sodium:alanine symporter family D1099_06635 PF01594 AI-2E family transporter D1099_06645 PF01136 Peptidase family U32 D1099_06645 PF16325 Peptidase family U32 C-terminal domain D1099_06650 PF04932 O-Antigen ligase D1099_06655 PF00534 Glycosyl transferases group 1 D1099_06655 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D1099_06660 PF01467 Cytidylyltransferase-like D1099_06665 PF00929 Exonuclease D1099_06670 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D1099_06675 PF01520 N-acetylmuramoyl-L-alanine amidase D1099_06675 PF01476 LysM domain D1099_06680 PF00342 Phosphoglucose isomerase D1099_06685 PF04380 Membrane fusogenic activity D1099_06710 PF08501 Shikimate dehydrogenase substrate binding domain D1099_06710 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D1099_06710 PF01488 Shikimate / quinate 5-dehydrogenase D1099_06715 PF01300 Telomere recombination D1099_06720 PF01396 Topoisomerase DNA binding C4 zinc finger D1099_06725 PF04266 ASCH domain D1099_06730 PF02631 RecX family D1099_06735 PF00154 recA bacterial DNA recombination protein D1099_06740 PF01063 Amino-transferase class IV D1099_06745 PF00425 chorismate binding enzyme D1099_06750 PF02646 RmuC family D1099_06755 PF00117 Glutamine amidotransferase class-I D1099_06760 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D1099_06760 PF03625 Domain of unknown function DUF302 D1099_06765 PF00152 tRNA synthetases class II (D, K and N) D1099_06765 PF01336 OB-fold nucleic acid binding domain D1099_06765 PF02938 GAD domain D1099_06770 PF00293 NUDIX domain D1099_06775 PF01709 Transcriptional regulator D1099_06785 PF02075 Crossover junction endodeoxyribonuclease RuvC D1099_06790 PF05193 Peptidase M16 inactive domain D1099_06790 PF00675 Insulinase (Peptidase family M16) D1099_06795 PF01717 Cobalamin-independent synthase, Catalytic domain D1099_06795 PF08267 Cobalamin-independent synthase, N-terminal domain D1099_06800 PF00939 Sodium:sulfate symporter transmembrane region D1099_06805 PF03466 LysR substrate binding domain D1099_06805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_06810 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1099_06820 PF00849 RNA pseudouridylate synthase D1099_06820 PF01479 S4 domain D1099_06825 PF01300 Telomere recombination D1099_06830 PF04261 Dyp-type peroxidase family D1099_06835 PF04715 Anthranilate synthase component I, N terminal region D1099_06835 PF00425 chorismate binding enzyme D1099_06840 PF00117 Glutamine amidotransferase class-I D1099_06845 PF00591 Glycosyl transferase family, a/b domain D1099_06845 PF02885 Glycosyl transferase family, helical bundle domain D1099_06850 PF08241 Methyltransferase domain D1099_06855 PF16036 Chalcone isomerase-like D1099_06860 PF04325 Protein of unknown function (DUF465) D1099_06865 PF01281 Ribosomal protein L9, N-terminal domain D1099_06865 PF03948 Ribosomal protein L9, C-terminal domain D1099_06870 PF01084 Ribosomal protein S18 D1099_06875 PF00436 Single-strand binding protein family D1099_06880 PF01250 Ribosomal protein S6 D1099_06885 PF02844 Phosphoribosylglycinamide synthetase, N domain D1099_06885 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D1099_06885 PF02843 Phosphoribosylglycinamide synthetase, C domain D1099_06890 PF04973 Nicotinamide mononucleotide transporter D1099_06895 PF09976 Tetratricopeptide repeat-like domain D1099_06900 PF13393 Histidyl-tRNA synthetase D1099_06900 PF03129 Anticodon binding domain D1099_06905 PF04551 GcpE protein D1099_06910 PF13464 Domain of unknown function (DUF4115) D1099_06915 PF00916 Sulfate permease family D1099_06915 PF01740 STAS domain D1099_06920 PF00206 Lyase D1099_06920 PF14698 Argininosuccinate lyase C-terminal D1099_06925 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D1099_06925 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D1099_06930 PF00999 Sodium/hydrogen exchanger family D1099_06930 PF02254 TrkA-N domain D1099_06945 PF03466 LysR substrate binding domain D1099_06945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_06960 PF12833 Helix-turn-helix domain D1099_06960 PF06719 AraC-type transcriptional regulator N-terminus D1099_06965 PF03466 LysR substrate binding domain D1099_06965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_06970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D1099_06975 PF00296 Luciferase-like monooxygenase D1099_06980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D1099_06980 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D1099_06985 PF00881 Nitroreductase family D1099_06990 PF01914 MarC family integral membrane protein D1099_07000 PF00756 Putative esterase D1099_07005 PF02798 Glutathione S-transferase, N-terminal domain D1099_07020 PF08240 Alcohol dehydrogenase GroES-like domain D1099_07020 PF00107 Zinc-binding dehydrogenase D1099_07025 PF02028 BCCT, betaine/carnitine/choline family transporter D1099_07040 PF03595 Voltage-dependent anion channel D1099_07045 PF13419 Haloacid dehalogenase-like hydrolase D1099_07060 PF00005 ABC transporter D1099_07060 PF00664 ABC transporter transmembrane region D1099_07065 PF02664 S-Ribosylhomocysteinase (LuxS) D1099_07070 PF02470 MlaD protein D1099_07075 PF01475 Ferric uptake regulator family D1099_07080 PF00258 Flavodoxin D1099_07085 PF01402 Ribbon-helix-helix protein, copG family D1099_07090 PF04073 Aminoacyl-tRNA editing domain D1099_07100 PF00860 Permease family D1099_07105 PF02635 DsrE/DsrF-like family D1099_07115 PF01176 Translation initiation factor 1A / IF-1 D1099_07120 PF10144 Bacterial virulence factor haemolysin D1099_07125 PF18429 Domain of unknown function (DUF5609) D1099_07130 PF04461 Protein of unknown function (DUF520) D1099_07140 PF00343 Carbohydrate phosphorylase D1099_07145 PF00196 Bacterial regulatory proteins, luxR family D1099_07145 PF17874 MalT-like TPR region D1099_07150 PF07148 Maltose operon periplasmic protein precursor (MalM) D1099_07155 PF02264 LamB porin D1099_07160 PF17912 MalK OB fold domain D1099_07160 PF00005 ABC transporter D1099_07165 PF01547 Bacterial extracellular solute-binding protein D1099_07170 PF14785 Maltose transport system permease protein MalF P2 domain D1099_07170 PF00528 Binding-protein-dependent transport system inner membrane component D1099_07175 PF00528 Binding-protein-dependent transport system inner membrane component D1099_07180 PF02446 4-alpha-glucanotransferase D1099_07185 PF02554 Carbon starvation protein CstA D1099_07190 PF01026 TatD related DNase D1099_07195 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1099_07195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D1099_07200 PF03350 Uncharacterized protein family, UPF0114 D1099_07205 PF00881 Nitroreductase family D1099_07220 PF00005 ABC transporter D1099_07225 PF01116 Fructose-bisphosphate aldolase class-II D1099_07230 PF00162 Phosphoglycerate kinase D1099_07235 PF00939 Sodium:sulfate symporter transmembrane region D1099_07240 PF00939 Sodium:sulfate symporter transmembrane region D1099_07245 PF00939 Sodium:sulfate symporter transmembrane region D1099_07250 PF01751 Toprim domain D1099_07250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1099_07250 PF00986 DNA gyrase B subunit, carboxyl terminus D1099_07250 PF00204 DNA gyrase B D1099_07255 PF00512 His Kinase A (phospho-acceptor) domain D1099_07255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D1099_07260 PF00072 Response regulator receiver domain D1099_07260 PF00486 Transcriptional regulatory protein, C terminal D1099_07265 PF00005 ABC transporter D1099_07275 PF00528 Binding-protein-dependent transport system inner membrane component D1099_07280 PF12849 PBP superfamily domain D1099_07285 PF09278 MerR, DNA binding D1099_07285 PF00376 MerR family regulatory protein D1099_07295 PF00403 Heavy-metal-associated domain D1099_07300 PF00403 Heavy-metal-associated domain D1099_07305 PF00106 short chain dehydrogenase D1099_07310 PF00881 Nitroreductase family D1099_07315 PF01343 Peptidase family S49 D1099_07320 PF00445 Ribonuclease T2 family D1099_07325 PF17283 SprT-like zinc ribbon domain D1099_07325 PF10263 SprT-like family D1099_07330 PF07992 Pyridine nucleotide-disulphide oxidoreductase D1099_07335 PF16921 Tex protein YqgF-like domain D1099_07335 PF09371 Tex-like protein N-terminal domain D1099_07335 PF17674 HHH domain D1099_07335 PF00575 S1 RNA binding domain D1099_07345 PF04055 Radical SAM superfamily D1099_07370 PF00749 tRNA synthetases class I (E and Q), catalytic domain D1099_07380 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D1099_07385 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D1099_07390 PF03966 Trm112p-like protein D1099_07395 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D1099_07400 PF07724 AAA domain (Cdc48 subfamily) D1099_07400 PF10431 C-terminal, D2-small domain, of ClpB protein D1099_07400 PF06689 ClpX C4-type zinc finger D1099_07405 PF00574 Clp protease D1099_07410 PF02657 Fe-S metabolism associated domain D1099_07425 PF00929 Exonuclease D1099_07430 PF12848 ABC transporter D1099_07430 PF00005 ABC transporter D1099_07435 PF02627 Carboxymuconolactone decarboxylase family D1099_07450 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D1099_07455 PF01722 BolA-like protein D1099_07465 PF05494 MlaC protein D1099_07470 PF02470 MlaD protein D1099_07475 PF02405 Permease MlaE D1099_07480 PF00005 ABC transporter D1099_07485 PF00595 PDZ domain D1099_07490 PF01370 NAD dependent epimerase/dehydratase family D1099_07490 PF08338 Domain of unknown function (DUF1731) D1099_07495 PF02863 Arginine repressor, C-terminal domain D1099_07495 PF01316 Arginine repressor, DNA binding domain D1099_07500 PF00056 lactate/malate dehydrogenase, NAD binding domain D1099_07500 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D1099_07510 PF05191 Adenylate kinase, active site lid D1099_07520 PF07690 Major Facilitator Superfamily D1099_07525 PF01370 NAD dependent epimerase/dehydratase family D1099_07530 PF01653 NAD-dependent DNA ligase adenylation domain D1099_07530 PF03120 NAD-dependent DNA ligase OB-fold domain D1099_07530 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D1099_07530 PF12826 Helix-hairpin-helix motif D1099_07530 PF00533 BRCA1 C Terminus (BRCT) domain D1099_07535 PF04354 ZipA, C-terminal FtsZ-binding domain D1099_07550 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D1099_07550 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D1099_07560 PF01177 Asp/Glu/Hydantoin racemase D1099_07565 PF07690 Major Facilitator Superfamily D1099_07570 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1099_07575 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D1099_07575 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D1099_07580 PF00459 Inositol monophosphatase family D1099_07585 PF00293 NUDIX domain D1099_07590 PF01479 S4 domain D1099_07595 PF01430 Hsp33 protein D1099_07600 PF03605 Anaerobic c4-dicarboxylate membrane transporter D1099_07605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D1099_07605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D1099_07610 PF00696 Amino acid kinase family D1099_07615 PF00367 phosphotransferase system, EIIB D1099_07615 PF02378 Phosphotransferase system, EIIC D1099_07620 PF00005 ABC transporter D1099_07625 PF00528 Binding-protein-dependent transport system inner membrane component D1099_07630 PF00381 PTS HPr component phosphorylation site D1099_07635 PF05524 PEP-utilising enzyme, N-terminal D1099_07635 PF00391 PEP-utilising enzyme, mobile domain D1099_07635 PF02896 PEP-utilising enzyme, TIM barrel domain D1099_07640 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D1099_07645 PF00919 Uncharacterized protein family UPF0004 D1099_07645 PF01938 TRAM domain D1099_07645 PF04055 Radical SAM superfamily D1099_07650 PF13361 UvrD-like helicase C-terminal domain D1099_07650 PF00580 UvrD/REP helicase N-terminal domain D1099_07655 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1099_07660 PF01924 Hydrogenase formation hypA family D1099_07665 PF00586 AIR synthase related protein, N-terminal domain D1099_07665 PF02769 AIR synthase related protein, C-terminal domain D1099_07670 PF13533 Biotin-lipoyl like D1099_07675 PF03412 Peptidase C39 family D1099_07675 PF00005 ABC transporter D1099_07675 PF00664 ABC transporter transmembrane region D1099_07680 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1099_07680 PF02382 N-terminal domain in RTX protein D1099_07680 PF08339 RTX C-terminal domain D1099_07685 PF02794 RTX toxin acyltransferase family D1099_07690 PF00708 Acylphosphatase D1099_07690 PF17788 HypF Kae1-like domain D1099_07690 PF07503 HypF finger D1099_07690 PF01300 Telomere recombination D1099_07695 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal D1099_07695 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D1099_07700 PF13247 4Fe-4S dicluster domain D1099_07705 PF03916 Polysulphide reductase, NrfD D1099_07710 PF00374 Nickel-dependent hydrogenase D1099_07715 PF01750 Hydrogenase maturation protease D1099_07720 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE D1099_07725 PF01455 HupF/HypC family D1099_07730 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D1099_07765 PF02559 CarD-like/TRCF domain D1099_07765 PF17757 UvrB interaction domain D1099_07765 PF03461 TRCF domain D1099_07765 PF00270 DEAD/DEAH box helicase D1099_07765 PF00271 Helicase conserved C-terminal domain D1099_07770 PF01433 Peptidase family M1 domain D1099_07770 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D1099_07770 PF11940 Domain of unknown function (DUF3458) Ig-like fold D1099_07775 PF02660 Glycerol-3-phosphate acyltransferase D1099_07780 PF02152 Dihydroneopterin aldolase D1099_07785 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region D1099_07785 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D1099_07790 PF18075 FtsX extracellular domain D1099_07795 PF00005 ABC transporter D1099_07800 PF02881 SRP54-type protein, helical bundle domain D1099_07800 PF00448 SRP54-type protein, GTPase domain D1099_07810 PF04269 Protein of unknown function, DUF440 D1099_07815 PF01613 Flavin reductase like domain D1099_07820 PF09313 Domain of unknown function (DUF1971) D1099_07820 PF03848 Tellurite resistance protein TehB D1099_07825 PF00528 Binding-protein-dependent transport system inner membrane component D1099_07830 PF00528 Binding-protein-dependent transport system inner membrane component D1099_07835 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1099_07840 PF00005 ABC transporter D1099_07845 PF01161 Phosphatidylethanolamine-binding protein D1099_07850 PF01699 Sodium/calcium exchanger protein D1099_07855 PF01381 Helix-turn-helix D1099_07865 PF13098 Thioredoxin-like domain D1099_07865 PF02683 Cytochrome C biogenesis protein transmembrane region D1099_07865 PF11412 Disulphide bond corrector protein DsbC D1099_07870 PF04315 Elongation factor P hydroxylase D1099_07875 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D1099_07880 PF04348 LppC putative lipoprotein D1099_07885 PF02021 Uncharacterised protein family UPF0102 D1099_07890 PF13580 SIS domain D1099_07895 PF04972 BON domain D1099_07905 PF01464 Transglycosylase SLT domain D1099_07905 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1099_07925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D1099_07925 PF01578 Cytochrome C assembly protein D1099_07930 PF03100 CcmE D1099_07935 PF04995 Heme exporter protein D (CcmD) D1099_07940 PF01578 Cytochrome C assembly protein D1099_07945 PF03379 CcmB protein D1099_07950 PF00005 ABC transporter D1099_07955 PF00308 Bacterial dnaA protein D1099_07985 PF04277 Oxaloacetate decarboxylase, gamma chain D1099_07990 PF00364 Biotin-requiring enzyme D1099_07990 PF00682 HMGL-like D1099_07990 PF02436 Conserved carboxylase domain D1099_07995 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit D1099_08000 PF03831 PhnA domain D1099_08000 PF08274 PhnA Zinc-Ribbon D1099_08005 PF14376 Haem-binding domain D1099_08005 PF00034 Cytochrome c D1099_08005 PF03150 Di-haem cytochrome c peroxidase D1099_08010 PF02594 Uncharacterised ACR, YggU family COG1872 D1099_08015 PF02325 YGGT family D1099_08020 PF04320 Protein with unknown function (DUF469) D1099_08025 PF02390 Putative methyltransferase D1099_08030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D1099_08030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D1099_08035 PF02504 Fatty acid synthesis protein D1099_08040 PF01783 Ribosomal L32p protein family D1099_08045 PF02620 Large ribosomal RNA subunit accumulation protein YceD D1099_08050 PF01578 Cytochrome C assembly protein D1099_08055 PF01595 Cyclin M transmembrane N-terminal domain D1099_08055 PF03471 Transporter associated domain D1099_08055 PF00571 CBS domain D1099_08060 PF00209 Sodium:neurotransmitter symporter family D1099_08070 PF03830 PTS system sorbose subfamily IIB component D1099_08070 PF03610 PTS system fructose IIA component D1099_08075 PF03609 PTS system sorbose-specific iic component D1099_08080 PF03613 PTS system mannose/fructose/sorbose family IID component D1099_08085 PF06173 Protein of unknown function (DUF986) D1099_08090 PF01238 Phosphomannose isomerase type I D1099_08105 PF00005 ABC transporter D1099_08105 PF00664 ABC transporter transmembrane region D1099_08105 PF03412 Peptidase C39 family D1099_08110 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D1099_08110 PF02382 N-terminal domain in RTX protein D1099_08110 PF08339 RTX C-terminal domain D1099_08120 PF00528 Binding-protein-dependent transport system inner membrane component D1099_08125 PF00005 ABC transporter D1099_08125 PF08402 TOBE domain D1099_08130 PF01225 Mur ligase family, catalytic domain D1099_08130 PF02875 Mur ligase family, glutamate ligase domain D1099_08130 PF08245 Mur ligase middle domain D1099_08135 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D1099_08145 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1099_08145 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1099_08150 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D1099_08155 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D1099_08155 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D1099_08155 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D1099_08155 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D1099_08160 PF00585 C-terminal regulatory domain of Threonine dehydratase D1099_08160 PF00291 Pyridoxal-phosphate dependent enzyme D1099_08165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1099_08175 PF00230 Major intrinsic protein D1099_08185 PF01980 tRNA-methyltransferase O D1099_08185 PF18389 TrmO C-terminal domain D1099_08195 PF01521 Iron-sulphur cluster biosynthesis D1099_08210 PF00534 Glycosyl transferases group 1 D1099_08210 PF13439 Glycosyltransferase Family 4 D1099_08215 PF00535 Glycosyl transferase family 2 D1099_08230 PF01943 Polysaccharide biosynthesis protein D1099_08235 PF03275 UDP-galactopyranose mutase D1099_08240 PF02397 Bacterial sugar transferase D1099_08245 PF01757 Acyltransferase family D1099_08260 PF16363 GDP-mannose 4,6 dehydratase D1099_08265 PF01165 Ribosomal protein S21 D1099_08270 PF10410 DnaB-helicase binding domain of primase D1099_08270 PF08278 DNA primase DnaG DnaB-binding D1099_08270 PF01807 CHC2 zinc finger D1099_08270 PF08275 DNA primase catalytic core, N-terminal domain D1099_08275 PF04539 Sigma-70 region 3 D1099_08275 PF04545 Sigma-70, region 4 D1099_08275 PF04542 Sigma-70 region 2 D1099_08275 PF00140 Sigma-70 factor, region 1.2 D1099_08275 PF03979 Sigma-70 factor, region 1.1 D1099_08275 PF04546 Sigma-70, non-essential region D1099_08280 PF01479 S4 domain D1099_08280 PF00579 tRNA synthetases class I (W and Y) D1099_08290 PF00773 RNB domain D1099_08290 PF08206 Ribonuclease B OB domain D1099_08290 PF08461 Ribonuclease R winged-helix domain D1099_08290 PF17876 Cold shock domain D1099_08290 PF00575 S1 RNA binding domain D1099_08295 PF00578 AhpC/TSA family D1099_08300 PF00440 Bacterial regulatory proteins, tetR family D1099_08305 PF03466 LysR substrate binding domain D1099_08305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_08310 PF00462 Glutaredoxin D1099_08310 PF08534 Redoxin D1099_08320 PF01297 Zinc-uptake complex component A periplasmic D1099_08325 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D1099_08330 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family D1099_08340 PF12111 Polyribonucleotide phosphorylase C terminal D1099_08340 PF10150 Ribonuclease E/G family D1099_08340 PF00575 S1 RNA binding domain D1099_08355 PF02525 Flavodoxin-like fold D1099_08360 PF13187 4Fe-4S dicluster domain D1099_08360 PF12838 4Fe-4S dicluster domain D1099_08370 PF10518 TAT (twin-arginine translocation) pathway signal sequence D1099_08370 PF01568 Molydopterin dinucleotide binding domain D1099_08370 PF00384 Molybdopterin oxidoreductase D1099_08370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1099_08375 PF12838 4Fe-4S dicluster domain D1099_08375 PF12800 4Fe-4S binding domain D1099_08380 PF12837 4Fe-4S binding domain D1099_08380 PF12801 4Fe-4S binding domain D1099_08385 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D1099_08390 PF03264 NapC/NirT cytochrome c family, N-terminal region D1099_08395 PF02096 60Kd inner membrane protein D1099_08395 PF14849 YidC periplasmic domain D1099_08400 PF03061 Thioesterase superfamily D1099_08405 PF13183 4Fe-4S dicluster domain D1099_08405 PF01565 FAD binding domain D1099_08405 PF02913 FAD linked oxidases, C-terminal domain D1099_08410 PF01389 OmpA-like transmembrane domain D1099_08410 PF00691 OmpA family D1099_08415 PF13407 Periplasmic binding protein domain D1099_08420 PF00005 ABC transporter D1099_08425 PF02653 Branched-chain amino acid transport system / permease component D1099_08445 PF06039 Malate:quinone oxidoreductase (Mqo) D1099_08450 PF00501 AMP-binding enzyme D1099_08455 PF00248 Aldo/keto reductase family D1099_08460 PF04175 Protein of unknown function (DUF406) D1099_08465 PF03222 Tryptophan/tyrosine permease family D1099_08475 PF02655 ATP-grasp domain D1099_08475 PF18419 ATP-grasp-like domain D1099_08475 PF04262 Glutamate-cysteine ligase D1099_08480 PF01420 Type I restriction modification DNA specificity domain D1099_08485 PF02899 Phage integrase, N-terminal SAM-like domain D1099_08485 PF00589 Phage integrase family D1099_08490 PF01420 Type I restriction modification DNA specificity domain D1099_08500 PF02384 N-6 DNA Methylase D1099_08500 PF12161 HsdM N-terminal domain D1099_08505 PF08463 EcoEI R protein C-terminal D1099_08505 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D1099_08505 PF00271 Helicase conserved C-terminal domain D1099_08505 PF04851 Type III restriction enzyme, res subunit D1099_08510 PF02666 Phosphatidylserine decarboxylase D1099_08520 PF04225 Opacity-associated protein A LysM-like domain D1099_08520 PF08525 Opacity-associated protein A N-terminal motif D1099_08530 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1099_08535 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D1099_08540 PF00164 Ribosomal protein S12/S23 D1099_08545 PF00177 Ribosomal protein S7p/S5e D1099_08550 PF03144 Elongation factor Tu domain 2 D1099_08550 PF00009 Elongation factor Tu GTP binding domain D1099_08550 PF14492 Elongation Factor G, domain II D1099_08550 PF00679 Elongation factor G C-terminus D1099_08550 PF03764 Elongation factor G, domain IV D1099_08555 PF03143 Elongation factor Tu C-terminal domain D1099_08555 PF00009 Elongation factor Tu GTP binding domain D1099_08555 PF03144 Elongation factor Tu domain 2 D1099_08570 PF08543 Phosphomethylpyrimidine kinase D1099_08580 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D1099_08585 PF07732 Multicopper oxidase D1099_08585 PF07731 Multicopper oxidase D1099_08590 PF01553 Acyltransferase D1099_08595 PF08534 Redoxin D1099_08600 PF10396 GTP-binding protein TrmE N-terminus D1099_08600 PF12631 MnmE helical domain D1099_08600 PF01926 50S ribosome-binding GTPase D1099_08605 PF05167 Uncharacterised ACR (DUF711) D1099_08615 PF02678 Pirin D1099_08615 PF17954 Quercetinase C-terminal cupin domain D1099_08620 PF00210 Ferritin-like domain D1099_08635 PF12805 FUSC-like inner membrane protein yccS D1099_08640 PF02142 MGS-like domain D1099_08645 PF14821 Threonine synthase N terminus D1099_08645 PF00291 Pyridoxal-phosphate dependent enzyme D1099_08655 PF10458 Valyl tRNA synthetase tRNA binding arm D1099_08655 PF00133 tRNA synthetases class I (I, L, M and V) D1099_08655 PF08264 Anticodon-binding domain of tRNA D1099_08670 PF13673 Acetyltransferase (GNAT) domain D1099_08675 PF04364 DNA polymerase III chi subunit, HolC D1099_08680 PF01476 LysM domain D1099_08685 PF05697 Bacterial trigger factor protein (TF) D1099_08685 PF05698 Bacterial trigger factor protein (TF) C-terminus D1099_08685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1099_08690 PF00581 Rhodanese-like domain D1099_08695 PF02556 Preprotein translocase subunit SecB D1099_08700 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D1099_08700 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D1099_08705 PF06426 Serine acetyltransferase, N-terminal D1099_08705 PF00132 Bacterial transferase hexapeptide (six repeats) D1099_08710 PF03143 Elongation factor Tu C-terminal domain D1099_08710 PF03144 Elongation factor Tu domain 2 D1099_08710 PF00009 Elongation factor Tu GTP binding domain D1099_08735 PF00485 Phosphoribulokinase / Uridine kinase family D1099_08740 PF08534 Redoxin D1099_08745 PF03918 Cytochrome C biogenesis protein D1099_08750 PF03918 Cytochrome C biogenesis protein D1099_08755 PF00994 Probable molybdopterin binding domain D1099_08760 PF00543 Nitrogen regulatory protein P-II D1099_08765 PF01252 Signal peptidase (SPase) II D1099_08770 PF02401 LytB protein D1099_08775 PF03937 Flavinator of succinate dehydrogenase D1099_08785 PF04055 Radical SAM superfamily D1099_08790 PF00043 Glutathione S-transferase, C-terminal domain D1099_08790 PF02798 Glutathione S-transferase, N-terminal domain D1099_08795 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D1099_08795 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D1099_08805 PF02313 Fumarate reductase subunit D D1099_08810 PF02300 Fumarate reductase subunit C D1099_08815 PF13085 2Fe-2S iron-sulfur cluster binding domain D1099_08815 PF13183 4Fe-4S dicluster domain D1099_08820 PF00890 FAD binding domain D1099_08820 PF02910 Fumarate reductase flavoprotein C-term D1099_08825 PF00152 tRNA synthetases class II (D, K and N) D1099_08830 PF01678 Diaminopimelate epimerase D1099_08835 PF03605 Anaerobic c4-dicarboxylate membrane transporter D1099_08840 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D1099_08850 PF03702 Anhydro-N-acetylmuramic acid kinase D1099_08855 PF01380 SIS domain D1099_08875 PF01523 Putative modulator of DNA gyrase D1099_08880 PF11734 TilS substrate C-terminal domain D1099_08880 PF09179 TilS substrate binding domain D1099_08880 PF01171 PP-loop family D1099_08890 PF00589 Phage integrase family D1099_08890 PF02899 Phage integrase, N-terminal SAM-like domain D1099_08935 PF01177 Asp/Glu/Hydantoin racemase D1099_08940 PF04345 Chorismate lyase D1099_08945 PF01048 Phosphorylase superfamily D1099_08950 PF13404 AsnC-type helix-turn-helix domain D1099_08950 PF01037 Lrp/AsnC ligand binding domain D1099_08955 PF03590 Aspartate-ammonia ligase D1099_08975 PF07690 Major Facilitator Superfamily D1099_08980 PF00140 Sigma-70 factor, region 1.2 D1099_08980 PF04545 Sigma-70, region 4 D1099_08980 PF04542 Sigma-70 region 2 D1099_08985 PF01794 Ferric reductase like transmembrane component D1099_08990 PF00174 Oxidoreductase molybdopterin binding domain D1099_08995 PF04542 Sigma-70 region 2 D1099_08995 PF08281 Sigma-70, region 4 D1099_09005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D1099_09005 PF04073 Aminoacyl-tRNA editing domain D1099_09005 PF03129 Anticodon binding domain D1099_09020 PF17191 RecG wedge domain D1099_09020 PF00271 Helicase conserved C-terminal domain D1099_09020 PF00270 DEAD/DEAH box helicase D1099_09025 PF01192 RNA polymerase Rpb6 D1099_09030 PF04607 Region found in RelA / SpoT proteins D1099_09030 PF02824 TGS domain D1099_09030 PF13291 ACT domain D1099_09035 PF00378 Enoyl-CoA hydratase/isomerase D1099_09040 PF00905 Penicillin binding protein transpeptidase domain D1099_09040 PF14814 Bifunctional transglycosylase second domain D1099_09040 PF00912 Transglycosylase D1099_09045 PF00444 Ribosomal protein L36 D1099_09050 PF01197 Ribosomal protein L31 D1099_09055 PF00834 Ribulose-phosphate 3 epimerase family D1099_09060 PF00550 Phosphopantetheine attachment site D1099_09080 PF02618 YceG-like family D1099_09085 PF02223 Thymidylate kinase D1099_09090 PF09115 DNA polymerase III, delta subunit, C terminal D1099_09095 PF06629 MltA-interacting protein MipA D1099_09100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1099_09105 PF02687 FtsX-like permease family D1099_09105 PF12704 MacB-like periplasmic core domain D1099_09105 PF00005 ABC transporter D1099_09115 PF01026 TatD related DNase D1099_09120 PF07509 Protein of unknown function (DUF1523) D1099_09125 PF00149 Calcineurin-like phosphoesterase D1099_09130 PF00535 Glycosyl transferase family 2 D1099_09140 PF00589 Phage integrase family D1099_09140 PF02899 Phage integrase, N-terminal SAM-like domain D1099_09145 PF17347 Family of unknown function (DUF5377) D1099_09150 PF02092 Glycyl-tRNA synthetase beta subunit D1099_09150 PF05746 DALR anticodon binding domain D1099_09160 PF04480 Protein of unknown function (DUF559) D1099_09165 PF02091 Glycyl-tRNA synthetase alpha subunit D1099_09175 PF01568 Molydopterin dinucleotide binding domain D1099_09175 PF00384 Molybdopterin oxidoreductase D1099_09175 PF18364 Molybdopterin oxidoreductase N-terminal domain D1099_09180 PF02613 Nitrate reductase delta subunit D1099_09195 PF00127 Copper binding proteins, plastocyanin/azurin family D1099_09200 PF00005 ABC transporter D1099_09205 PF01032 FecCD transport family D1099_09210 PF01497 Periplasmic binding protein D1099_09215 PF08007 Cupin superfamily protein D1099_09220 PF01245 Ribosomal protein L19 D1099_09225 PF01746 tRNA (Guanine-1)-methyltransferase D1099_09230 PF05239 PRC-barrel domain D1099_09230 PF01782 RimM N-terminal domain D1099_09235 PF00886 Ribosomal protein S16 D1099_09240 PF01196 Ribosomal protein L17 D1099_09245 PF01000 RNA polymerase Rpb3/RpoA insert domain D1099_09245 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D1099_09245 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D1099_09250 PF00163 Ribosomal protein S4/S9 N-terminal domain D1099_09250 PF01479 S4 domain D1099_09255 PF00411 Ribosomal protein S11 D1099_09260 PF00416 Ribosomal protein S13/S18 D1099_09265 PF00444 Ribosomal protein L36 D1099_09270 PF00344 SecY translocase D1099_09275 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D1099_09280 PF00327 Ribosomal protein L30p/L7e D1099_09285 PF03719 Ribosomal protein S5, C-terminal domain D1099_09285 PF00333 Ribosomal protein S5, N-terminal domain D1099_09290 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D1099_09295 PF00347 Ribosomal protein L6 D1099_09300 PF00410 Ribosomal protein S8 D1099_09305 PF00253 Ribosomal protein S14p/S29e D1099_09310 PF00673 ribosomal L5P family C-terminus D1099_09310 PF00281 Ribosomal protein L5 D1099_09315 PF00467 KOW motif D1099_09315 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D1099_09320 PF00238 Ribosomal protein L14p/L23e D1099_09325 PF00366 Ribosomal protein S17 D1099_09330 PF00831 Ribosomal L29 protein D1099_09335 PF00252 Ribosomal protein L16p/L10e D1099_09340 PF07650 KH domain D1099_09340 PF00189 Ribosomal protein S3, C-terminal domain D1099_09345 PF00237 Ribosomal protein L22p/L17e D1099_09350 PF00203 Ribosomal protein S19 D1099_09355 PF03947 Ribosomal Proteins L2, C-terminal domain D1099_09355 PF00181 Ribosomal Proteins L2, RNA binding domain D1099_09360 PF00276 Ribosomal protein L23 D1099_09365 PF00573 Ribosomal protein L4/L1 family D1099_09370 PF00297 Ribosomal protein L3 D1099_09375 PF00338 Ribosomal protein S10p/S20e D1099_09385 PF10415 Fumarase C C-terminus D1099_09385 PF00206 Lyase D1099_09390 PF01979 Amidohydrolase family D1099_09395 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D1099_09400 PF00701 Dihydrodipicolinate synthetase family D1099_09405 PF00480 ROK family D1099_09410 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase D1099_09415 PF02348 Cytidylyltransferase D1099_09415 PF13472 GDSL-like Lipase/Acylhydrolase family D1099_09420 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D1099_09420 PF16582 Middle domain of thiamine pyrophosphate D1099_09420 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D1099_09425 PF00561 alpha/beta hydrolase fold D1099_09435 PF01078 Magnesium chelatase, subunit ChlI D1099_09435 PF13335 Magnesium chelatase, subunit ChlI C-terminal D1099_09440 PF01381 Helix-turn-helix D1099_09445 PF01494 FAD binding domain D1099_09450 PF00149 Calcineurin-like phosphoesterase D1099_09450 PF02872 5'-nucleotidase, C-terminal domain D1099_09455 PF02978 Signal peptide binding domain D1099_09455 PF02881 SRP54-type protein, helical bundle domain D1099_09455 PF00448 SRP54-type protein, GTPase domain D1099_09470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D1099_09470 PF00529 HlyD membrane-fusion protein of T1SS D1099_09475 PF00664 ABC transporter transmembrane region D1099_09475 PF03412 Peptidase C39 family D1099_09475 PF00005 ABC transporter D1099_09495 PF02899 Phage integrase, N-terminal SAM-like domain D1099_09495 PF00589 Phage integrase family D1099_09505 PF00772 DnaB-like helicase N terminal domain D1099_09505 PF03796 DnaB-like helicase C terminal domain D1099_09535 PF01464 Transglycosylase SLT domain D1099_09535 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D1099_09540 PF04362 Bacterial Fe(2+) trafficking D1099_09545 PF00730 HhH-GPD superfamily base excision DNA repair protein D1099_09545 PF14815 NUDIX domain D1099_09550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D1099_09555 PF17746 SfsA N-terminal OB domain D1099_09555 PF03749 Sugar fermentation stimulation protein RE domain D1099_09560 PF00227 Proteasome subunit D1099_09565 PF10431 C-terminal, D2-small domain, of ClpB protein D1099_09565 PF07724 AAA domain (Cdc48 subfamily) D1099_09565 PF00004 ATPase family associated with various cellular activities (AAA) D1099_09585 PF01850 PIN domain D1099_09590 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D1099_09610 PF04998 RNA polymerase Rpb1, domain 5 D1099_09610 PF05000 RNA polymerase Rpb1, domain 4 D1099_09610 PF04983 RNA polymerase Rpb1, domain 3 D1099_09610 PF00623 RNA polymerase Rpb1, domain 2 D1099_09610 PF04997 RNA polymerase Rpb1, domain 1 D1099_09615 PF04561 RNA polymerase Rpb2, domain 2 D1099_09615 PF04565 RNA polymerase Rpb2, domain 3 D1099_09615 PF10385 RNA polymerase beta subunit external 1 domain D1099_09615 PF00562 RNA polymerase Rpb2, domain 6 D1099_09615 PF04560 RNA polymerase Rpb2, domain 7 D1099_09615 PF04563 RNA polymerase beta subunit D1099_09650 PF00542 Ribosomal protein L7/L12 C-terminal domain D1099_09650 PF16320 Ribosomal protein L7/L12 dimerisation domain D1099_09655 PF00466 Ribosomal protein L10 D1099_09660 PF00687 Ribosomal protein L1p/L10e family D1099_09665 PF00298 Ribosomal protein L11, RNA binding domain D1099_09665 PF03946 Ribosomal protein L11, N-terminal domain D1099_09670 PF00467 KOW motif D1099_09670 PF02357 Transcription termination factor nusG D1099_09675 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D1099_09685 PF03611 PTS system sugar-specific permease component D1099_09690 PF03169 OPT oligopeptide transporter protein D1099_09695 PF17782 DprA winged helix domain D1099_09695 PF02481 DNA recombination-mediator protein A D1099_09700 PF01327 Polypeptide deformylase D1099_09705 PF01370 NAD dependent epimerase/dehydratase family D1099_09730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D1099_09730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1099_09735 PF00596 Class II Aldolase and Adducin N-terminal domain D1099_09740 PF01261 Xylose isomerase-like TIM barrel D1099_09745 PF00455 DeoR C terminal sensor domain D1099_09745 PF08220 DeoR-like helix-turn-helix domain D1099_09755 PF03611 PTS system sugar-specific permease component D1099_09760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1099_09765 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D1099_09775 PF05159 Capsule polysaccharide biosynthesis protein D1099_09780 PF05159 Capsule polysaccharide biosynthesis protein D1099_09785 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1099_09790 PF00005 ABC transporter D1099_09795 PF00528 Binding-protein-dependent transport system inner membrane component D1099_09800 PF00528 Binding-protein-dependent transport system inner membrane component D1099_09805 PF07274 Protein of unknown function (DUF1440) D1099_09810 PF00465 Iron-containing alcohol dehydrogenase D1099_09815 PF07690 Major Facilitator Superfamily D1099_09820 PF00596 Class II Aldolase and Adducin N-terminal domain D1099_09825 PF05025 RbsD / FucU transport protein family D1099_09830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1099_09830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1099_09835 PF07882 L-fucose isomerase, second N-terminal domain D1099_09835 PF07881 L-fucose isomerase, first N-terminal domain D1099_09835 PF02952 L-fucose isomerase, C-terminal domain D1099_09840 PF08220 DeoR-like helix-turn-helix domain D1099_09840 PF00455 DeoR C terminal sensor domain D1099_09845 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D1099_09845 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal D1099_09845 PF02769 AIR synthase related protein, C-terminal domain D1099_09870 PF00037 4Fe-4S binding domain D1099_09870 PF12838 4Fe-4S dicluster domain D1099_09875 PF02613 Nitrate reductase delta subunit D1099_09880 PF04976 DMSO reductase anchor subunit (DmsC) D1099_09885 PF12800 4Fe-4S binding domain D1099_09885 PF13247 4Fe-4S dicluster domain D1099_09890 PF01568 Molydopterin dinucleotide binding domain D1099_09890 PF00384 Molybdopterin oxidoreductase D1099_09890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D1099_09895 PF00294 pfkB family carbohydrate kinase D1099_09900 PF13407 Periplasmic binding protein domain D1099_09905 PF02653 Branched-chain amino acid transport system / permease component D1099_09910 PF00005 ABC transporter D1099_09915 PF05025 RbsD / FucU transport protein family D1099_09920 PF00356 Bacterial regulatory proteins, lacI family D1099_09925 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D1099_09925 PF00356 Bacterial regulatory proteins, lacI family D1099_09930 PF01202 Shikimate kinase D1099_09935 PF02447 GntP family permease D1099_09940 PF03830 PTS system sorbose subfamily IIB component D1099_09940 PF03610 PTS system fructose IIA component D1099_09945 PF03609 PTS system sorbose-specific iic component D1099_09950 PF03613 PTS system mannose/fructose/sorbose family IID component D1099_09960 PF02810 SEC-C motif D1099_09965 PF00497 Bacterial extracellular solute-binding proteins, family 3 D1099_09975 PF01134 Glucose inhibited division protein A D1099_09975 PF13932 GidA associated domain D1099_09980 PF02527 rRNA small subunit methyltransferase G D1099_09990 PF00119 ATP synthase A chain D1099_09995 PF00137 ATP synthase subunit C D1099_10000 PF00430 ATP synthase B/B' CF(0) D1099_10005 PF00213 ATP synthase delta (OSCP) subunit D1099_10010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1099_10010 PF00306 ATP synthase alpha/beta chain, C terminal domain D1099_10010 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1099_10015 PF00231 ATP synthase D1099_10020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D1099_10020 PF02874 ATP synthase alpha/beta family, beta-barrel domain D1099_10025 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D1099_10050 PF04077 DsrH like protein D1099_10055 PF02635 DsrE/DsrF-like family D1099_10060 PF02635 DsrE/DsrF-like family D1099_10065 PF08348 YheO-like PAS domain D1099_10065 PF13309 HTH domain D1099_10070 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D1099_10070 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D1099_10075 PF04102 SlyX D1099_10085 PF01048 Phosphorylase superfamily D1099_10090 PF04055 Radical SAM superfamily D1099_10090 PF18693 TRAM domain D1099_10090 PF00919 Uncharacterized protein family UPF0004 D1099_10095 PF18071 HMW1C N-terminal D1099_10095 PF18254 HMW1 domain 2 D1099_10110 PF08220 DeoR-like helix-turn-helix domain D1099_10110 PF00455 DeoR C terminal sensor domain D1099_10115 PF01380 SIS domain D1099_10120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D1099_10120 PF02378 Phosphotransferase system, EIIC D1099_10120 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D1099_10125 PF01232 Mannitol dehydrogenase Rossmann domain D1099_10125 PF08125 Mannitol dehydrogenase C-terminal domain D1099_10130 PF05068 Mannitol repressor D1099_10135 PF02080 TrkA-C domain D1099_10135 PF03600 Citrate transporter D1099_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_10145 PF03466 LysR substrate binding domain D1099_10150 PF10670 Domain of unknown function (DUF4198) D1099_10160 PF01891 Cobalt uptake substrate-specific transmembrane region D1099_10170 PF00005 ABC transporter D1099_10180 PF00547 Urease, gamma subunit D1099_10185 PF00699 Urease beta subunit D1099_10190 PF00449 Urease alpha-subunit, N-terminal domain D1099_10190 PF01979 Amidohydrolase family D1099_10200 PF02814 UreE urease accessory protein, N-terminal domain D1099_10200 PF05194 UreE urease accessory protein, C-terminal domain D1099_10205 PF01730 UreF D1099_10210 PF02492 CobW/HypB/UreG, nucleotide-binding domain D1099_10215 PF01774 UreD urease accessory protein D1099_10230 PF04175 Protein of unknown function (DUF406) D1099_10235 PF00893 Small Multidrug Resistance protein D1099_10240 PF01814 Hemerythrin HHE cation binding domain D1099_10240 PF04405 Domain of Unknown function (DUF542) D1099_10245 PF03313 Serine dehydratase alpha chain D1099_10250 PF00528 Binding-protein-dependent transport system inner membrane component D1099_10255 PF00005 ABC transporter D1099_10260 PF00488 MutS domain V D1099_10260 PF05190 MutS family domain IV D1099_10260 PF05192 MutS domain III D1099_10260 PF01624 MutS domain I D1099_10260 PF05188 MutS domain II D1099_10270 PF02590 Predicted SPOUT methyltransferase D1099_10275 PF03717 Penicillin-binding Protein dimerisation domain D1099_10275 PF00905 Penicillin binding protein transpeptidase domain D1099_10280 PF01098 Cell cycle protein D1099_10285 PF03330 Lytic transglycolase D1099_10290 PF07943 Penicillin-binding protein 5, C-terminal domain D1099_10290 PF00768 D-alanyl-D-alanine carboxypeptidase D1099_10295 PF04359 Protein of unknown function (DUF493) D1099_10300 PF03099 Biotin/lipoate A/B protein ligase family D1099_10305 PF04055 Radical SAM superfamily D1099_10310 PF01741 Large-conductance mechanosensitive channel, MscL D1099_10315 PF12724 Flavodoxin domain D1099_10320 PF02386 Cation transport protein D1099_10325 PF09186 Domain of unknown function (DUF1949) D1099_10325 PF01205 Uncharacterized protein family UPF0029 D1099_10335 PF02911 Formyl transferase, C-terminal domain D1099_10335 PF00551 Formyl transferase D1099_10345 PF00005 ABC transporter D1099_10350 PF01061 ABC-2 type transporter D1099_10360 PF02563 Polysaccharide biosynthesis/export protein D1099_10370 PF01467 Cytidylyltransferase-like D1099_10380 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D1099_10385 PF00535 Glycosyl transferase family 2 D1099_10420 PF06821 Serine hydrolase D1099_10425 PF02615 Malate/L-lactate dehydrogenase D1099_10435 PF03956 Lysine exporter LysO D1099_10445 PF01618 MotA/TolQ/ExbB proton channel family D1099_10450 PF02472 Biopolymer transport protein ExbD/TolR D1099_10455 PF17484 N-Lobe handle Tf-binding protein B D1099_10455 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B D1099_10455 PF17483 C-lobe handle domain of Tf-binding protein B D1099_10460 PF00593 TonB dependent receptor D1099_10460 PF07715 TonB-dependent Receptor Plug Domain D1099_10480 PF00258 Flavodoxin D1099_10490 PF03841 L-seryl-tRNA selenium transferase D1099_10490 PF12390 Selenocysteine synthase N terminal D1099_10495 PF00009 Elongation factor Tu GTP binding domain D1099_10495 PF03144 Elongation factor Tu domain 2 D1099_10495 PF09106 Elongation factor SelB, winged helix D1099_10495 PF09107 Elongation factor SelB, winged helix D1099_10500 PF01189 16S rRNA methyltransferase RsmB/F D1099_10500 PF01029 NusB family D1099_10505 PF02080 TrkA-C domain D1099_10505 PF02254 TrkA-N domain D1099_10510 PF01649 Ribosomal protein S20 D1099_10515 PF03023 Lipid II flippase MurJ D1099_10525 PF00202 Aminotransferase class-III D1099_10530 PF00953 Glycosyl transferase family 4 D1099_10540 PF02350 UDP-N-acetylglucosamine 2-epimerase D1099_10545 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D1099_10545 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D1099_10545 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D1099_10555 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D1099_10560 PF01943 Polysaccharide biosynthesis protein D1099_10565 PF00970 Oxidoreductase FAD-binding domain D1099_10565 PF00111 2Fe-2S iron-sulfur cluster binding domain D1099_10565 PF00175 Oxidoreductase NAD-binding domain D1099_10570 PF03063 Prismane/CO dehydrogenase family D1099_10575 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 D1099_10580 PF06899 WzyE protein, O-antigen assembly polymerase D1099_10585 PF03808 Glycosyl transferase WecB/TagA/CpsF family D1099_10630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D1099_10630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D1099_10635 PF00175 Oxidoreductase NAD-binding domain D1099_10635 PF00667 FAD binding domain D1099_10635 PF00258 Flavodoxin D1099_10640 PF00009 Elongation factor Tu GTP binding domain D1099_10645 PF01507 Phosphoadenosine phosphosulfate reductase family D1099_10650 PF01507 Phosphoadenosine phosphosulfate reductase family D1099_10655 PF10414 Sirohaem synthase dimerisation region D1099_10655 PF14824 Sirohaem biosynthesis protein central D1099_10655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D1099_10665 PF00528 Binding-protein-dependent transport system inner membrane component D1099_10670 PF00528 Binding-protein-dependent transport system inner membrane component D1099_10675 PF12857 TOBE-like domain D1099_10675 PF17850 CysA C-terminal regulatory domain D1099_10675 PF00005 ABC transporter D1099_10680 PF01070 FMN-dependent dehydrogenase D1099_10685 PF03099 Biotin/lipoate A/B protein ligase family D1099_10685 PF02237 Biotin protein ligase C terminal domain D1099_10685 PF08279 HTH domain D1099_10690 PF01565 FAD binding domain D1099_10690 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D1099_10695 PF00691 OmpA family D1099_10695 PF01389 OmpA-like transmembrane domain D1099_10700 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D1099_10700 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D1099_10705 PF04403 Paraquat-inducible protein A D1099_10710 PF01841 Transglutaminase-like superfamily D1099_10720 PF00403 Heavy-metal-associated domain D1099_10725 PF00465 Iron-containing alcohol dehydrogenase D1099_10730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D1099_10730 PF03466 LysR substrate binding domain D1099_10740 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D1099_10740 PF00132 Bacterial transferase hexapeptide (six repeats) D1099_10740 PF14602 Hexapeptide repeat of succinyl-transferase D1099_10745 PF01220 Dehydroquinase class II D1099_10750 PF04488 Glycosyltransferase sugar-binding region containing DXD motif D1099_10755 PF00364 Biotin-requiring enzyme D1099_10760 PF02785 Biotin carboxylase C-terminal domain D1099_10760 PF00289 Biotin carboxylase, N-terminal domain D1099_10760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1099_10765 PF12804 MobA-like NTP transferase domain D1099_10770 PF06288 Protein of unknown function (DUF1040) D1099_10775 PF01323 DSBA-like thioredoxin domain D1099_10785 PF05036 Sporulation related domain D1099_10785 PF05036 Sporulation related domain D1099_10790 PF04445 Putative SAM-dependent methyltransferase D1099_10795 PF02557 D-alanyl-D-alanine carboxypeptidase D1099_10800 PF01546 Peptidase family M20/M25/M40 D1099_10800 PF07687 Peptidase dimerisation domain D1099_10805 PF03960 ArsC family D1099_10815 PF00809 Pterin binding enzyme D1099_10820 PF00849 RNA pseudouridylate synthase D1099_10820 PF01479 S4 domain D1099_10830 PF00924 Mechanosensitive ion channel D1099_10830 PF05552 Conserved TM helix D1099_10835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D1099_10835 PF02785 Biotin carboxylase C-terminal domain D1099_10835 PF00289 Biotin carboxylase, N-terminal domain D1099_10845 PF00675 Insulinase (Peptidase family M16) D1099_10845 PF05193 Peptidase M16 inactive domain D1099_10845 PF16187 Middle or third domain of peptidase_M16 D1099_10850 PF17946 RecC C-terminal domain D1099_10875 PF07977 FabA-like domain D1099_10880 PF13654 AAA domain D1099_10880 PF05362 Lon protease (S16) C-terminal proteolytic domain D1099_10885 PF17414 MatP C-terminal ribbon-helix-helix domain D1099_10885 PF06303 MatP N-terminal domain D1099_10890 PF00579 tRNA synthetases class I (W and Y) D1099_10895 PF13419 Haloacid dehalogenase-like hydrolase D1099_10905 PF01790 Prolipoprotein diacylglyceryl transferase D1099_10910 PF01925 Sulfite exporter TauE/SafE D1099_10915 PF00293 NUDIX domain D1099_10925 PF00719 Inorganic pyrophosphatase D1099_10930 PF05175 Methyltransferase small domain D1099_10935 PF03737 Aldolase/RraA D1099_10940 PF01226 Formate/nitrite transporter D1099_10960 PF00684 DnaJ central domain D1099_10960 PF00226 DnaJ domain D1099_10960 PF01556 DnaJ C terminal domain D1099_10965 PF00012 Hsp70 protein D1099_10970 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D1099_10970 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D1099_10980 PF13407 Periplasmic binding protein domain D1099_10985 PF00005 ABC transporter D1099_10990 PF02653 Branched-chain amino acid transport system / permease component D1099_10995 PF12833 Helix-turn-helix domain D1099_11000 PF05649 Peptidase family M13 D1099_11000 PF01431 Peptidase family M13 D1099_11005 PF10571 Uncharacterised protein family UPF0547 D1099_11010 PF00474 Sodium:solute symporter family D1099_11015 PF06196 Protein of unknown function (DUF997) D1099_11020 PF01340 Met Apo-repressor, MetJ D1099_11025 PF04333 MlaA lipoprotein D1099_11030 PF01263 Aldose 1-epimerase D1099_11045 PF14883 Hypothetical glycosyl hydrolase family 13 D1099_11045 PF01522 Polysaccharide deacetylase D1099_11050 PF00535 Glycosyl transferase family 2 D1099_11060 PF00121 Triosephosphate isomerase D1099_11065 PF01142 tRNA pseudouridine synthase D (TruD) D1099_11070 PF01975 Survival protein SurE D1099_11075 PF09335 SNARE associated Golgi protein D1099_11090 PF01476 LysM domain D1099_11090 PF01551 Peptidase family M23 D1099_11095 PF03352 Methyladenine glycosylase D1099_11105 PF07670 Nucleoside recognition D1099_11110 PF07670 Nucleoside recognition D1099_11115 PF00762 Ferrochelatase D1099_11120 PF00468 Ribosomal protein L34 D1099_11125 PF00825 Ribonuclease P D1099_11130 PF01809 Putative membrane protein insertion efficiency factor D1099_11135 PF00120 Glutamine synthetase, catalytic domain D1099_11135 PF03951 Glutamine synthetase, beta-Grasp domain D1099_11140 PF00149 Calcineurin-like phosphoesterase D1099_11145 PF00293 NUDIX domain D1099_11150 PF06146 Phosphate-starvation-inducible E D1099_11155 PF01648 4'-phosphopantetheinyl transferase superfamily D1099_11160 PF00892 EamA-like transporter family D1099_11165 PF06965 Na+/H+ antiporter 1 D1099_11175 PF02580 D-Tyr-tRNA(Tyr) deacylase D1099_11180 PF03631 Virulence factor BrkB D1099_11185 PF00171 Aldehyde dehydrogenase family D1099_11205 PF01119 DNA mismatch repair protein, C-terminal domain D1099_11205 PF08676 MutL C terminal dimerisation domain D1099_11210 PF08240 Alcohol dehydrogenase GroES-like domain D1099_11210 PF00107 Zinc-binding dehydrogenase D1099_11220 PF17209 Hfq protein D1099_11225 PF16360 GTP-binding GTPase Middle Region D1099_11225 PF01926 50S ribosome-binding GTPase D1099_11225 PF13167 GTP-binding GTPase N-terminal D1099_11230 PF03641 Possible lysine decarboxylase D1099_11235 PF03819 MazG nucleotide pyrophosphohydrolase domain D1099_11240 PF00027 Cyclic nucleotide-binding domain D1099_11240 PF13545 Crp-like helix-turn-helix domain D1099_11245 PF06794 Uncharacterised protein family (UPF0270) D1099_11250 PF00440 Bacterial regulatory proteins, tetR family D1099_11255 PF00692 dUTPase D1099_11260 PF04127 DNA / pantothenate metabolism flavoprotein D1099_11260 PF02441 Flavoprotein D1099_11265 PF04002 RadC-like JAB domain D1099_11270 PF00830 Ribosomal L28 family D1099_11275 PF00471 Ribosomal protein L33 D1099_11285 PF00202 Aminotransferase class-III D1099_11290 PF00282 Pyridoxal-dependent decarboxylase conserved domain D1099_11295 PF01206 Sulfurtransferase TusA D1099_11300 PF04143 Sulphur transport D1099_11305 PF04219 Protein of unknown function, DUF D1099_11310 PF05958 tRNA (Uracil-5-)-methyltransferase D1099_11325 PF01544 CorA-like Mg2+ transporter protein D1099_11330 PF01209 ubiE/COQ5 methyltransferase family D1099_11340 PF03109 ABC1 family D1099_11345 PF02416 mttA/Hcf106 family D1099_11355 PF00902 Sec-independent protein translocase protein (TatC) D1099_11360 PF00490 Delta-aminolevulinic acid dehydratase D1099_11370 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D1099_11370 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D1099_11370 PF06827 Zinc finger found in FPG and IleRS D1099_11375 PF05525 Branched-chain amino acid transport protein D1099_11385 PF00698 Acyl transferase domain D1099_11390 PF02677 Epoxyqueuosine reductase QueH D1099_11395 PF00348 Polyprenyl synthetase D1099_11405 PF03358 NADPH-dependent FMN reductase D1099_11410 PF07681 DoxX D1099_11415 PF00829 Ribosomal prokaryotic L21 protein D1099_11420 PF01016 Ribosomal L27 protein D1099_11425 PF00892 EamA-like transporter family D1099_11435 PF04575 Protein of unknown function (DUF560) D1099_11440 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D1099_11445 PF00156 Phosphoribosyl transferase domain D1099_11450 PF05175 Methyltransferase small domain D1099_11450 PF08468 Methyltransferase small domain N-terminal D1099_11460 PF00583 Acetyltransferase (GNAT) family D1099_11465 PF00271 Helicase conserved C-terminal domain D1099_11465 PF00270 DEAD/DEAH box helicase D1099_11470 PF01243 Pyridoxamine 5'-phosphate oxidase D1099_11470 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D1099_11475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D1099_11480 PF00171 Aldehyde dehydrogenase family D1099_11485 PF01184 GPR1/FUN34/yaaH family D1099_11490 PF00005 ABC transporter D1099_11500 PF01032 FecCD transport family D1099_11505 PF07715 TonB-dependent Receptor Plug Domain D1099_11505 PF00593 TonB dependent receptor D1099_11515 PF01259 SAICAR synthetase D1099_11520 PF08029 HisG, C-terminal domain D1099_11520 PF01634 ATP phosphoribosyltransferase D1099_11525 PF00815 Histidinol dehydrogenase D1099_11530 PF00155 Aminotransferase class I and II D1099_11540 PF00475 Imidazoleglycerol-phosphate dehydratase D1099_11550 PF00117 Glutamine amidotransferase class-I D1099_11555 PF00977 Histidine biosynthesis protein D1099_11560 PF00977 Histidine biosynthesis protein D1099_11570 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D1099_11570 PF01502 Phosphoribosyl-AMP cyclohydrolase D1099_11575 PF02592 Putative vitamin uptake transporter D1099_11580 PF00557 Metallopeptidase family M24 D1099_11590 PF00356 Bacterial regulatory proteins, lacI family D1099_11590 PF13407 Periplasmic binding protein domain D1099_11595 PF08244 Glycosyl hydrolases family 32 C terminal D1099_11595 PF00251 Glycosyl hydrolases family 32 N-terminal domain D1099_11600 PF00294 pfkB family carbohydrate kinase D1099_11605 PF07732 Multicopper oxidase D1099_11610 PF02687 FtsX-like permease family D1099_11610 PF12704 MacB-like periplasmic core domain D1099_11615 PF00005 ABC transporter D1099_11620 PF12704 MacB-like periplasmic core domain D1099_11620 PF02687 FtsX-like permease family D1099_11625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D1099_11625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D1099_11630 PF00793 DAHP synthetase I family D1099_11635 PF13369 Transglutaminase-like superfamily D1099_11640 PF13847 Methyltransferase domain D1099_11640 PF17827 PrmC N-terminal domain D1099_11650 PF03462 PCRF domain D1099_11650 PF00472 RF-1 domain