locus-tag class description APP7_0001 PF00308 Bacterial dnaA protein APP7_0001 PF08299 Bacterial dnaA protein helix-turn-helix APP7_0001 PF11638 DnaA N-terminal domain APP7_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain APP7_0002 PF02767 DNA polymerase III beta subunit, central domain APP7_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain APP7_0003 PF02463 RecF/RecN/SMC N terminal domain APP7_0004 PF00080 Copper/zinc superoxide dismutase (SODC) APP7_0005 PF02774 Semialdehyde dehydrogenase, dimerisation domain APP7_0005 PF01118 Semialdehyde dehydrogenase, NAD binding domain APP7_0007 PF02684 Lipid-A-disaccharide synthetase APP7_0008 PF08496 Peptidase family S49 N-terminal APP7_0008 PF01343 Peptidase family S49 APP7_0009 PF02381 MraZ protein, putative antitoxin-like APP7_0010 PF01795 MraW methylase family APP7_0011 PF04999 Cell division protein FtsL APP7_0012 PF00905 Penicillin binding protein transpeptidase domain APP7_0012 PF03717 Penicillin-binding Protein dimerisation domain APP7_0013 PF02875 Mur ligase family, glutamate ligase domain APP7_0013 PF08245 Mur ligase middle domain APP7_0013 PF01225 Mur ligase family, catalytic domain APP7_0014 PF01225 Mur ligase family, catalytic domain APP7_0014 PF02875 Mur ligase family, glutamate ligase domain APP7_0014 PF08245 Mur ligase middle domain APP7_0015 PF00953 Glycosyl transferase family 4 APP7_0015 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 APP7_0016 PF08245 Mur ligase middle domain APP7_0016 PF02875 Mur ligase family, glutamate ligase domain APP7_0017 PF01098 Cell cycle protein APP7_0018 PF04101 Glycosyltransferase family 28 C-terminal domain APP7_0018 PF03033 Glycosyltransferase family 28 N-terminal domain APP7_0019 PF02875 Mur ligase family, glutamate ligase domain APP7_0019 PF08245 Mur ligase middle domain APP7_0019 PF01225 Mur ligase family, catalytic domain APP7_0020 PF07478 D-ala D-ala ligase C-terminus APP7_0020 PF01820 D-ala D-ala ligase N-terminus APP7_0021 PF03799 Cell division protein FtsQ APP7_0021 PF08478 POTRA domain, FtsQ-type APP7_0022 PF02491 SHS2 domain inserted in FTSA APP7_0023 PF00091 Tubulin/FtsZ family, GTPase domain APP7_0023 PF12327 FtsZ family, C-terminal domain APP7_0024 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase APP7_0025 PF02463 RecF/RecN/SMC N terminal domain APP7_0026 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APP7_0026 PF00005 ABC transporter APP7_0027 PF12911 N-terminal TM domain of oligopeptide transport permease C APP7_0027 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0028 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0029 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP7_0030 PF16658 Class II release factor RF3, C-terminal domain APP7_0030 PF00009 Elongation factor Tu GTP binding domain APP7_0030 PF03144 Elongation factor Tu domain 2 APP7_0033 PF01195 Peptidyl-tRNA hydrolase APP7_0034 PF06071 Protein of unknown function (DUF933) APP7_0034 PF01926 50S ribosome-binding GTPase APP7_0037 PF05433 Glycine zipper 2TM domain APP7_0038 PF06185 YecM protein APP7_0039 PF03485 Arginyl tRNA synthetase N terminal domain APP7_0039 PF00750 tRNA synthetases class I (R) APP7_0039 PF05746 DALR anticodon binding domain APP7_0040 PF01018 GTP1/OBG APP7_0040 PF01926 50S ribosome-binding GTPase APP7_0041 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) APP7_0042 PF00588 SpoU rRNA Methylase family APP7_0042 PF08032 RNA 2'-O ribose methyltransferase substrate binding APP7_0043 PF13091 PLD-like domain APP7_0044 PF08264 Anticodon-binding domain of tRNA APP7_0044 PF06827 Zinc finger found in FPG and IleRS APP7_0044 PF00133 tRNA synthetases class I (I, L, M and V) APP7_0045 PF06574 FAD synthetase APP7_0045 PF01687 Riboflavin kinase APP7_0046 PF01467 Cytidylyltransferase-like APP7_0046 PF13521 AAA domain APP7_0047 PF00149 Calcineurin-like phosphoesterase APP7_0048 PF00072 Response regulator receiver domain APP7_0048 PF00486 Transcriptional regulatory protein, C terminal APP7_0051 PF01168 Alanine racemase, N-terminal domain APP7_0054 PF00462 Glutaredoxin APP7_0055 PF03725 3' exoribonuclease family, domain 2 APP7_0055 PF01138 3' exoribonuclease family, domain 1 APP7_0056 PF03755 YicC-like family, N-terminal region APP7_0056 PF08340 Domain of unknown function (DUF1732) APP7_0057 PF01571 Aminomethyltransferase folate-binding domain APP7_0058 PF00037 4Fe-4S binding domain APP7_0059 PF00072 Response regulator receiver domain APP7_0059 PF00196 Bacterial regulatory proteins, luxR family APP7_0060 PF01170 Putative RNA methylase family UPF0020 APP7_0060 PF02926 THUMP domain APP7_0060 PF10672 S-adenosylmethionine-dependent methyltransferase APP7_0061 PF00588 SpoU rRNA Methylase family APP7_0062 PF00923 Transaldolase/Fructose-6-phosphate aldolase APP7_0063 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP7_0064 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP7_0065 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0066 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0066 PF12911 N-terminal TM domain of oligopeptide transport permease C APP7_0067 PF00005 ABC transporter APP7_0067 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APP7_0068 PF00005 ABC transporter APP7_0068 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APP7_0069 PF06146 Phosphate-starvation-inducible E APP7_0071 PF01042 Endoribonuclease L-PSP APP7_0072 PF01063 Amino-transferase class IV APP7_0073 PF00462 Glutaredoxin APP7_0074 PF02132 RecR protein APP7_0074 PF13662 Toprim domain APP7_0075 PF02575 YbaB/EbfC DNA-binding family APP7_0076 PF03544 Gram-negative bacterial TonB protein C-terminal APP7_0077 PF02472 Biopolymer transport protein ExbD/TolR APP7_0078 PF01618 MotA/TolQ/ExbB proton channel family APP7_0079 PF00581 Rhodanese-like domain APP7_0081 PF00391 PEP-utilising enzyme, mobile domain APP7_0081 PF05524 PEP-utilising enzyme, N-terminal APP7_0081 PF03610 PTS system fructose IIA component APP7_0081 PF00381 PTS HPr component phosphorylation site APP7_0082 PF02734 DAK2 domain APP7_0083 PF02733 Dak1 domain APP7_0084 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP7_0085 PF02348 Cytidylyltransferase APP7_0086 PF09297 NADH pyrophosphatase zinc ribbon domain APP7_0086 PF00293 NUDIX domain APP7_0087 PF00849 RNA pseudouridylate synthase APP7_0089 PF04186 FxsA cytoplasmic membrane protein APP7_0090 PF00557 Metallopeptidase family M24 APP7_0091 PF01206 Sulfurtransferase TusA APP7_0092 PF06877 Regulator of ribonuclease activity B APP7_0093 PF01926 50S ribosome-binding GTPase APP7_0095 PF02535 ZIP Zinc transporter APP7_0096 PF00920 Dehydratase family APP7_0098 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP7_0098 PF00205 Thiamine pyrophosphate enzyme, central domain APP7_0098 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APP7_0099 PF02335 Cytochrome c552 APP7_0101 PF13247 4Fe-4S dicluster domain APP7_0102 PF03916 Polysulphide reductase, NrfD APP7_0103 PF05658 Head domain of trimeric autotransporter adhesin APP7_0103 PF05662 Coiled stalk of trimeric autotransporter adhesin APP7_0103 PF03895 YadA-like membrane anchor domain APP7_0103 PF13018 Extended Signal Peptide of Type V secretion system APP7_0104 PF13018 Extended Signal Peptide of Type V secretion system APP7_0104 PF05662 Coiled stalk of trimeric autotransporter adhesin APP7_0104 PF13018 Extended Signal Peptide of Type V secretion system APP7_0104 PF03895 YadA-like membrane anchor domain APP7_0104 PF13018 Extended Signal Peptide of Type V secretion system APP7_0104 PF03895 YadA-like membrane anchor domain APP7_0104 PF05658 Head domain of trimeric autotransporter adhesin APP7_0104 PF05658 Head domain of trimeric autotransporter adhesin APP7_0104 PF03895 YadA-like membrane anchor domain APP7_0104 PF05658 Head domain of trimeric autotransporter adhesin APP7_0104 PF05662 Coiled stalk of trimeric autotransporter adhesin APP7_0104 PF05662 Coiled stalk of trimeric autotransporter adhesin APP7_0105 PF00860 Permease family APP7_0106 PF00171 Aldehyde dehydrogenase family APP7_0106 PF18327 Proline utilization A proline dehydrogenase N-terminal domain APP7_0106 PF14850 DNA-binding domain of Proline dehydrogenase APP7_0106 PF01619 Proline dehydrogenase APP7_0107 PF00474 Sodium:solute symporter family APP7_0108 PF01614 Bacterial transcriptional regulator APP7_0108 PF09339 IclR helix-turn-helix domain APP7_0109 PF01812 5-formyltetrahydrofolate cyclo-ligase family APP7_0110 PF05164 Cell division protein ZapA APP7_0111 PF03695 Uncharacterised protein family (UPF0149) APP7_0112 PF01208 Uroporphyrinogen decarboxylase (URO-D) APP7_0113 PF04222 Protein of unknown function (DUF416) APP7_0114 PF00216 Bacterial DNA-binding protein APP7_0115 PF00303 Thymidylate synthase APP7_0118 PF04055 Radical SAM superfamily APP7_0118 PF06968 Biotin and Thiamin Synthesis associated domain APP7_0119 PF00313 'Cold-shock' DNA-binding domain APP7_0120 PF04352 ProQ/FINO family APP7_0121 PF11818 C-terminal domain of tail specific protease (DUF3340) APP7_0121 PF17804 Tail specific protease N-terminal domain APP7_0121 PF03572 Peptidase family S41 APP7_0121 PF00595 PDZ domain APP7_0123 PF03734 L,D-transpeptidase catalytic domain APP7_0124 PF05951 Bacterial protein of unknown function (DUF882) APP7_0125 PF00753 Metallo-beta-lactamase superfamily APP7_0128 PF01230 HIT domain APP7_0129 PF00950 ABC 3 transport family APP7_0130 PF00950 ABC 3 transport family APP7_0131 PF01351 Ribonuclease HII APP7_0132 PF03193 RsgA GTPase APP7_0133 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_0133 PF03466 LysR substrate binding domain APP7_0134 PF13419 Haloacid dehalogenase-like hydrolase APP7_0135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_0135 PF03466 LysR substrate binding domain APP7_0137 PF00710 Asparaginase, N-terminal APP7_0137 PF17763 Glutaminase/Asparaginase C-terminal domain APP7_0138 PF06418 CTP synthase N-terminus APP7_0138 PF00117 Glutamine amidotransferase class-I APP7_0139 PF10063 Uncharacterized integral membrane protein (DUF2301) APP7_0140 PF00694 Aconitase C-terminal domain APP7_0141 PF00330 Aconitase family (aconitate hydratase) APP7_0142 PF13556 PucR C-terminal helix-turn-helix domain APP7_0142 PF17853 GGDEF-like domain APP7_0142 PF05651 Putative sugar diacid recognition APP7_0143 PF02447 GntP family permease APP7_0144 PF02595 Glycerate kinase family APP7_0145 PF00708 Acylphosphatase APP7_0146 PF11398 Protein of unknown function (DUF2813) APP7_0147 PF03641 Possible lysine decarboxylase APP7_0147 PF11892 Domain of unknown function (DUF3412) APP7_0147 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases APP7_0148 PF01207 Dihydrouridine synthase (Dus) APP7_0150 PF02867 Ribonucleotide reductase, barrel domain APP7_0150 PF00317 Ribonucleotide reductase, all-alpha domain APP7_0150 PF03477 ATP cone domain APP7_0151 PF01521 Iron-sulphur cluster biosynthesis APP7_0151 PF01106 NifU-like domain APP7_0152 PF11973 NQRA C-terminal domain APP7_0152 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) APP7_0153 PF03116 NQR2, RnfD, RnfE family APP7_0154 PF04205 FMN-binding domain APP7_0155 PF02508 Rnf-Nqr subunit, membrane protein APP7_0156 PF02508 Rnf-Nqr subunit, membrane protein APP7_0157 PF00111 2Fe-2S iron-sulfur cluster binding domain APP7_0157 PF00970 Oxidoreductase FAD-binding domain APP7_0157 PF00175 Oxidoreductase NAD-binding domain APP7_0158 PF02424 ApbE family APP7_0159 PF04400 (Na+)-NQR maturation NqrM APP7_0161 PF12832 MFS_1 like family APP7_0162 PF03807 NADP oxidoreductase coenzyme F420-dependent APP7_0162 PF14748 Pyrroline-5-carboxylate reductase dimerisation APP7_0163 PF04381 Putative exonuclease, RdgC APP7_0164 PF13419 Haloacid dehalogenase-like hydrolase APP7_0168 PF02508 Rnf-Nqr subunit, membrane protein APP7_0169 PF13375 RnfC Barrel sandwich hybrid domain APP7_0169 PF12838 4Fe-4S dicluster domain APP7_0169 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit APP7_0170 PF03458 UPF0126 domain APP7_0171 PF03116 NQR2, RnfD, RnfE family APP7_0172 PF04205 FMN-binding domain APP7_0173 PF02508 Rnf-Nqr subunit, membrane protein APP7_0174 PF03279 Bacterial lipid A biosynthesis acyltransferase APP7_0177 PF01258 Prokaryotic dksA/traR C4-type zinc finger APP7_0178 PF12627 Probable RNA and SrmB- binding site of polymerase A APP7_0178 PF12626 Polymerase A arginine-rich C-terminus APP7_0178 PF01743 Poly A polymerase head domain APP7_0179 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) APP7_0181 PF11739 Dicarboxylate transport APP7_0183 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APP7_0184 PF00929 Exonuclease APP7_0186 PF02153 Prephenate dehydrogenase APP7_0186 PF01817 Chorismate mutase type II APP7_0187 PF00793 DAHP synthetase I family APP7_0188 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APP7_0189 PF00224 Pyruvate kinase, barrel domain APP7_0189 PF02887 Pyruvate kinase, alpha/beta domain APP7_0190 PF00300 Histidine phosphatase superfamily (branch 1) APP7_0191 PF01207 Dihydrouridine synthase (Dus) APP7_0192 PF02954 Bacterial regulatory protein, Fis family APP7_0193 PF00209 Sodium:neurotransmitter symporter family APP7_0194 PF02086 D12 class N6 adenine-specific DNA methyltransferase APP7_0195 PF01761 3-dehydroquinate synthase APP7_0196 PF01202 Shikimate kinase APP7_0198 PF00905 Penicillin binding protein transpeptidase domain APP7_0198 PF17092 Penicillin-binding protein OB-like domain APP7_0198 PF00912 Transglycosylase APP7_0199 PF11104 Type IV pilus assembly protein PilM; APP7_0203 PF03958 Bacterial type II/III secretion system short domain APP7_0203 PF00263 Bacterial type II and III secretion system protein APP7_0204 PF01029 NusB family APP7_0205 PF02769 AIR synthase related protein, C-terminal domain APP7_0205 PF00586 AIR synthase related protein, N-terminal domain APP7_0206 PF04608 Phosphatidylglycerophosphatase A APP7_0207 PF01810 LysE type translocator APP7_0208 PF08032 RNA 2'-O ribose methyltransferase substrate binding APP7_0208 PF00588 SpoU rRNA Methylase family APP7_0209 PF00459 Inositol monophosphatase family APP7_0210 PF13292 1-deoxy-D-xylulose-5-phosphate synthase APP7_0210 PF02780 Transketolase, C-terminal domain APP7_0210 PF02779 Transketolase, pyrimidine binding domain APP7_0211 PF00665 Integrase core domain APP7_0211 PF13333 Integrase core domain APP7_0213 PF00464 Serine hydroxymethyltransferase APP7_0214 PF01513 ATP-NAD kinase APP7_0215 PF18019 HD domain APP7_0216 PF01867 CRISPR associated protein Cas1 APP7_0218 PF09615 CRISPR-associated protein (Cas_Csy3) APP7_0219 PF09614 CRISPR-associated protein (Cas_Csy2) APP7_0221 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APP7_0221 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APP7_0221 PF03129 Anticodon binding domain APP7_0221 PF02824 TGS domain APP7_0222 PF03783 Curli production assembly/transport component CsgG APP7_0224 PF05643 Putative bacterial lipoprotein (DUF799) APP7_0225 PF05198 Translation initiation factor IF-3, N-terminal domain APP7_0225 PF00707 Translation initiation factor IF-3, C-terminal domain APP7_0226 PF01632 Ribosomal protein L35 APP7_0227 PF00453 Ribosomal protein L20 APP7_0230 PF00571 CBS domain APP7_0230 PF03471 Transporter associated domain APP7_0230 PF01595 Cyclin M transmembrane N-terminal domain APP7_0231 PF00849 RNA pseudouridylate synthase APP7_0232 PF00300 Histidine phosphatase superfamily (branch 1) APP7_0233 PF03652 Holliday junction resolvase APP7_0234 PF02622 Uncharacterized ACR, COG1678 APP7_0235 PF04452 RNA methyltransferase APP7_0237 PF01722 BolA-like protein APP7_0240 PF07516 SecA Wing and Scaffold domain APP7_0240 PF07517 SecA DEAD-like domain APP7_0240 PF02810 SEC-C motif APP7_0240 PF01043 SecA preprotein cross-linking domain APP7_0242 PF00293 NUDIX domain APP7_0243 PF01118 Semialdehyde dehydrogenase, NAD binding domain APP7_0244 PF00696 Amino acid kinase family APP7_0245 PF00202 Aminotransferase class-III APP7_0248 PF07715 TonB-dependent Receptor Plug Domain APP7_0248 PF00593 TonB dependent receptor APP7_0249 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APP7_0249 PF07498 Rho termination factor, N-terminal domain APP7_0249 PF07497 Rho termination factor, RNA-binding domain APP7_0250 PF00291 Pyridoxal-phosphate dependent enzyme APP7_0251 PF00288 GHMP kinases N terminal domain APP7_0251 PF08544 GHMP kinases C terminal APP7_0252 PF13840 ACT domain APP7_0252 PF00742 Homoserine dehydrogenase APP7_0252 PF01842 ACT domain APP7_0252 PF03447 Homoserine dehydrogenase, NAD binding domain APP7_0252 PF00696 Amino acid kinase family APP7_0253 PF02777 Iron/manganese superoxide dismutases, C-terminal domain APP7_0253 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain APP7_0254 PF00842 Alanine racemase, C-terminal domain APP7_0254 PF01168 Alanine racemase, N-terminal domain APP7_0255 PF13538 UvrD-like helicase C-terminal domain APP7_0256 PF07687 Peptidase dimerisation domain APP7_0256 PF01546 Peptidase family M20/M25/M40 APP7_0257 PF00156 Phosphoribosyl transferase domain APP7_0258 PF00625 Guanylate kinase APP7_0259 PF02321 Outer membrane efflux protein APP7_0260 PF03658 RnfH family Ubiquitin APP7_0261 PF03364 Polyketide cyclase / dehydrase and lipid transport APP7_0262 PF00005 ABC transporter APP7_0262 PF03459 TOBE domain APP7_0263 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0265 PF01061 ABC-2 type transporter APP7_0266 PF00005 ABC transporter APP7_0267 PF12169 DNA polymerase III subunits gamma and tau domain III APP7_0267 PF12170 DNA polymerase III tau subunit V interacting with alpha APP7_0268 PF00156 Phosphoribosyl transferase domain APP7_0270 PF01042 Endoribonuclease L-PSP APP7_0272 PF04073 Aminoacyl-tRNA editing domain APP7_0273 PF00005 ABC transporter APP7_0274 PF01297 Zinc-uptake complex component A periplasmic APP7_0275 PF04358 DsrC like protein APP7_0276 PF01027 Inhibitor of apoptosis-promoting Bax1 APP7_0277 PF01066 CDP-alcohol phosphatidyltransferase APP7_0279 PF01541 GIY-YIG catalytic domain APP7_0279 PF02151 UvrB/uvrC motif APP7_0279 PF08459 UvrC Helix-hairpin-helix N-terminal APP7_0280 PF01026 TatD related DNase APP7_0281 PF13361 UvrD-like helicase C-terminal domain APP7_0281 PF00580 UvrD/REP helicase N-terminal domain APP7_0282 PF08402 TOBE domain APP7_0282 PF00005 ABC transporter APP7_0283 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0284 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0285 PF01330 RuvA N terminal domain APP7_0285 PF07499 RuvA, C-terminal domain APP7_0286 PF05496 Holliday junction DNA helicase RuvB P-loop domain APP7_0286 PF05491 RuvB C-terminal winged helix domain APP7_0286 PF17864 RuvB AAA lid domain APP7_0287 PF05491 RuvB C-terminal winged helix domain APP7_0287 PF17864 RuvB AAA lid domain APP7_0287 PF05496 Holliday junction DNA helicase RuvB P-loop domain APP7_0289 PF03989 DNA gyrase C-terminal domain, beta-propeller APP7_0289 PF00521 DNA gyrase/topoisomerase IV, subunit A APP7_0290 PF12161 HsdM N-terminal domain APP7_0290 PF02384 N-6 DNA Methylase APP7_0295 PF01420 Type I restriction modification DNA specificity domain APP7_0297 PF12008 Type I restriction and modification enzyme - subunit R C terminal APP7_0297 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) APP7_0297 PF18766 SWI2/SNF2 ATPase APP7_0299 PF00899 ThiF family APP7_0300 PF17274 Family of unknown function (DUF5339) APP7_0301 PF01654 Cytochrome bd terminal oxidase subunit I APP7_0302 PF02322 Cytochrome bd terminal oxidase subunit II APP7_0303 PF03061 Thioesterase superfamily APP7_0304 PF01618 MotA/TolQ/ExbB proton channel family APP7_0305 PF02472 Biopolymer transport protein ExbD/TolR APP7_0306 PF06519 TolA C-terminal APP7_0306 PF06519 TolA C-terminal APP7_0307 PF07676 WD40-like Beta Propeller Repeat APP7_0307 PF04052 TolB amino-terminal domain APP7_0308 PF07676 WD40-like Beta Propeller Repeat APP7_0308 PF04052 TolB amino-terminal domain APP7_0309 PF00691 OmpA family APP7_0311 PF00226 DnaJ domain APP7_0311 PF05099 Tellurite resistance protein TerB APP7_0312 PF01207 Dihydrouridine synthase (Dus) APP7_0313 PF05128 Domain of unknown function (DUF697) APP7_0315 PF03454 MoeA C-terminal region (domain IV) APP7_0315 PF03453 MoeA N-terminal region (domain I and II) APP7_0315 PF00994 Probable molybdopterin binding domain APP7_0316 PF00899 ThiF family APP7_0317 PF01938 TRAM domain APP7_0317 PF05958 tRNA (Uracil-5-)-methyltransferase APP7_0318 PF13286 Phosphohydrolase-associated domain APP7_0318 PF01966 HD domain APP7_0319 PF00271 Helicase conserved C-terminal domain APP7_0319 PF12137 RNA polymerase recycling family C-terminal APP7_0319 PF18337 RapA N-terminal Tudor like domain APP7_0319 PF00176 SNF2 family N-terminal domain APP7_0319 PF18339 RapA N-terminal Tudor like domain 1 APP7_0320 PF00849 RNA pseudouridylate synthase APP7_0321 PF01510 N-acetylmuramoyl-L-alanine amidase APP7_0322 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ APP7_0323 PF00156 Phosphoribosyl transferase domain APP7_0324 PF01717 Cobalamin-independent synthase, Catalytic domain APP7_0325 PF01053 Cys/Met metabolism PLP-dependent enzyme APP7_0326 PF02600 Disulfide bond formation protein DsbB APP7_0327 PF06450 Bacterial Na+/H+ antiporter B (NhaB) APP7_0328 PF07840 FadR C-terminal domain APP7_0328 PF00392 Bacterial regulatory proteins, gntR family APP7_0329 PF02562 PhoH-like protein APP7_0331 PF03462 PCRF domain APP7_0331 PF00472 RF-1 domain APP7_0332 PF02769 AIR synthase related protein, C-terminal domain APP7_0332 PF00586 AIR synthase related protein, N-terminal domain APP7_0333 PF00293 NUDIX domain APP7_0334 PF01494 FAD binding domain APP7_0338 PF01494 FAD binding domain APP7_0339 PF03668 P-loop ATPase protein family APP7_0340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP7_0341 PF12399 Branched-chain amino acid ATP-binding cassette transporter APP7_0341 PF00005 ABC transporter APP7_0342 PF03968 OstA-like protein APP7_0344 PF00311 Phosphoenolpyruvate carboxylase APP7_0345 PF04536 TPM domain APP7_0347 PF04011 LemA family APP7_0348 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP7_0349 PF00294 pfkB family carbohydrate kinase APP7_0350 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP7_0350 PF00381 PTS HPr component phosphorylation site APP7_0351 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APP7_0351 PF02806 Alpha amylase, C-terminal all-beta domain APP7_0351 PF00128 Alpha amylase, catalytic domain APP7_0352 PF00128 Alpha amylase, catalytic domain APP7_0352 PF18390 Glycogen debranching enzyme C-terminal domain APP7_0352 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) APP7_0353 PF00483 Nucleotidyl transferase APP7_0354 PF00534 Glycosyl transferases group 1 APP7_0354 PF08323 Starch synthase catalytic domain APP7_0355 PF00343 Carbohydrate phosphorylase APP7_0356 PF00334 Nucleoside diphosphate kinase APP7_0357 PF08264 Anticodon-binding domain of tRNA APP7_0357 PF01588 Putative tRNA binding domain APP7_0357 PF09334 tRNA synthetases class I (M) APP7_0358 PF13378 Enolase C-terminal domain-like APP7_0360 PF01479 S4 domain APP7_0360 PF00849 RNA pseudouridylate synthase APP7_0361 PF07690 Major Facilitator Superfamily APP7_0363 PF12462 DNA helicase IV / RNA helicase N terminal APP7_0363 PF13361 UvrD-like helicase C-terminal domain APP7_0363 PF00580 UvrD/REP helicase N-terminal domain APP7_0365 PF12833 Helix-turn-helix domain APP7_0366 PF00440 Bacterial regulatory proteins, tetR family APP7_0367 PF07690 Major Facilitator Superfamily APP7_0368 PF02909 Tetracyclin repressor-like, C-terminal domain APP7_0368 PF00440 Bacterial regulatory proteins, tetR family APP7_0370 PF07669 Eco57I restriction-modification methylase APP7_0370 PF12950 TaqI-like C-terminal specificity domain APP7_0375 PF00665 Integrase core domain APP7_0377 PF07690 Major Facilitator Superfamily APP7_0380 PF01261 Xylose isomerase-like TIM barrel APP7_0381 PF00877 NlpC/P60 family APP7_0382 PF00717 Peptidase S24-like APP7_0383 PF01228 Glycine radical APP7_0384 PF03167 Uracil DNA glycosylase superfamily APP7_0385 PF04393 Protein of unknown function (DUF535) APP7_0386 PF03797 Autotransporter beta-domain APP7_0386 PF00082 Subtilase family APP7_0387 PF00271 Helicase conserved C-terminal domain APP7_0387 PF04408 Helicase associated domain (HA2) APP7_0387 PF11898 Domain of unknown function (DUF3418) APP7_0387 PF00270 DEAD/DEAH box helicase APP7_0387 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold APP7_0388 PF04284 Protein of unknown function (DUF441) APP7_0389 PF01025 GrpE APP7_0390 PF13416 Bacterial extracellular solute-binding protein APP7_0391 PF01554 MatE APP7_0392 PF00580 UvrD/REP helicase N-terminal domain APP7_0392 PF13361 UvrD-like helicase C-terminal domain APP7_0392 PF12705 PD-(D/E)XK nuclease superfamily APP7_0393 PF00795 Carbon-nitrogen hydrolase APP7_0394 PF03471 Transporter associated domain APP7_0394 PF00571 CBS domain APP7_0395 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) APP7_0396 PF00230 Major intrinsic protein APP7_0397 PF00665 Integrase core domain APP7_0397 PF13936 Helix-turn-helix domain APP7_0398 PF00230 Major intrinsic protein APP7_0399 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP7_0399 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP7_0400 PF02190 ATP-dependent protease La (LON) substrate-binding domain APP7_0400 PF00004 ATPase family associated with various cellular activities (AAA) APP7_0400 PF05362 Lon protease (S16) C-terminal proteolytic domain APP7_0401 PF07690 Major Facilitator Superfamily APP7_0402 PF03009 Glycerophosphoryl diester phosphodiesterase family APP7_0403 PF04324 BFD-like [2Fe-2S] binding domain APP7_0403 PF01266 FAD dependent oxidoreductase APP7_0404 PF00890 FAD binding domain APP7_0405 PF02754 Cysteine-rich domain APP7_0405 PF13183 4Fe-4S dicluster domain APP7_0406 PF01872 RibD C-terminal domain APP7_0406 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APP7_0407 PF00677 Lumazine binding domain APP7_0408 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase APP7_0408 PF00925 GTP cyclohydrolase II APP7_0409 PF00885 6,7-dimethyl-8-ribityllumazine synthase APP7_0410 PF01272 Transcription elongation factor, GreA/GreB, C-term APP7_0410 PF03449 Transcription elongation factor, N-terminal APP7_0411 PF01380 SIS domain APP7_0411 PF00571 CBS domain APP7_0412 PF00883 Cytosol aminopeptidase family, catalytic domain APP7_0412 PF12404 Peptidase APP7_0413 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) APP7_0414 PF01758 Sodium Bile acid symporter family APP7_0415 PF13533 Biotin-lipoyl like APP7_0417 PF00682 HMGL-like APP7_0417 PF08502 LeuA allosteric (dimerisation) domain APP7_0418 PF08281 Sigma-70, region 4 APP7_0418 PF04542 Sigma-70 region 2 APP7_0419 PF03873 Anti sigma-E protein RseA, C-terminal domain APP7_0419 PF03872 Anti sigma-E protein RseA, N-terminal domain APP7_0421 PF00501 AMP-binding enzyme APP7_0421 PF13193 AMP-binding enzyme C-terminal domain APP7_0423 PF00398 Ribosomal RNA adenine dimethylase APP7_0424 PF09312 SurA N-terminal domain APP7_0424 PF00639 PPIC-type PPIASE domain APP7_0425 PF00156 Phosphoribosyl transferase domain APP7_0426 PF01467 Cytidylyltransferase-like APP7_0426 PF00294 pfkB family carbohydrate kinase APP7_0427 PF01926 50S ribosome-binding GTPase APP7_0427 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal APP7_0428 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain APP7_0428 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain APP7_0428 PF01488 Shikimate / quinate 5-dehydrogenase APP7_0429 PF02824 TGS domain APP7_0429 PF04607 Region found in RelA / SpoT proteins APP7_0429 PF13291 ACT domain APP7_0430 PF13288 DXP reductoisomerase C-terminal domain APP7_0430 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase APP7_0430 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain APP7_0431 PF00132 Bacterial transferase hexapeptide (six repeats) APP7_0431 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 APP7_0432 PF07977 FabA-like domain APP7_0433 PF00132 Bacterial transferase hexapeptide (six repeats) APP7_0433 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD APP7_0435 PF07244 Surface antigen variable number repeat APP7_0435 PF01103 Surface antigen APP7_0436 PF02163 Peptidase family M50 APP7_0438 PF01255 Putative undecaprenyl diphosphate synthase APP7_0439 PF16123 Hydroxyacylglutathione hydrolase C-terminus APP7_0439 PF00753 Metallo-beta-lactamase superfamily APP7_0440 PF00480 ROK family APP7_0441 PF01569 PAP2 superfamily APP7_0442 PF01985 CRS1 / YhbY (CRM) domain APP7_0443 PF00535 Glycosyl transferase family 2 APP7_0444 PF00768 D-alanyl-D-alanine carboxypeptidase APP7_0445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APP7_0446 PF00764 Arginosuccinate synthase APP7_0447 PF00075 RNase H APP7_0448 PF02674 Colicin V production protein APP7_0449 PF00156 Phosphoribosyl transferase domain APP7_0451 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase APP7_0451 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain APP7_0452 PF04355 SmpA / OmlA family APP7_0453 PF04245 37-kD nucleoid-associated bacterial protein APP7_0454 PF01042 Endoribonuclease L-PSP APP7_0456 PF00589 Phage integrase family APP7_0463 PF04381 Putative exonuclease, RdgC APP7_0467 PF03837 RecT family APP7_0485 PF05106 Phage holin family (Lysis protein S) APP7_0486 PF00182 Chitinase class I APP7_0491 PF00574 Clp protease APP7_0506 PF07119 Protein of unknown function (DUF1375) APP7_0507 PF00180 Isocitrate/isopropylmalate dehydrogenase APP7_0508 PF01641 SelR domain APP7_0509 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain APP7_0509 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain APP7_0511 PF04085 rod shape-determining protein MreC APP7_0512 PF04093 rod shape-determining protein MreD APP7_0513 PF00004 ATPase family associated with various cellular activities (AAA) APP7_0513 PF16193 AAA C-terminal domain APP7_0513 PF12002 MgsA AAA+ ATPase C terminal APP7_0514 PF00950 ABC 3 transport family APP7_0515 PF13230 Glutamine amidotransferases class-II APP7_0516 PF00561 alpha/beta hydrolase fold APP7_0517 PF02698 DUF218 domain APP7_0518 PF05658 Head domain of trimeric autotransporter adhesin APP7_0518 PF05662 Coiled stalk of trimeric autotransporter adhesin APP7_0518 PF13018 Extended Signal Peptide of Type V secretion system APP7_0518 PF03895 YadA-like membrane anchor domain APP7_0519 PF00665 Integrase core domain APP7_0519 PF13936 Helix-turn-helix domain APP7_0520 PF05662 Coiled stalk of trimeric autotransporter adhesin APP7_0520 PF13018 Extended Signal Peptide of Type V secretion system APP7_0520 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin APP7_0520 PF03895 YadA-like membrane anchor domain APP7_0521 PF02589 LUD domain APP7_0522 PF13183 4Fe-4S dicluster domain APP7_0522 PF02589 LUD domain APP7_0522 PF11870 Domain of unknown function (DUF3390) APP7_0523 PF02754 Cysteine-rich domain APP7_0524 PF02652 L-lactate permease APP7_0525 PF00816 H-NS histone family APP7_0526 PF03553 Na+/H+ antiporter family APP7_0527 PF13407 Periplasmic binding protein domain APP7_0528 PF02629 CoA binding domain APP7_0528 PF00549 CoA-ligase APP7_0529 PF00549 CoA-ligase APP7_0529 PF08442 ATP-grasp domain APP7_0530 PF04393 Protein of unknown function (DUF535) APP7_0531 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP7_0531 PF00364 Biotin-requiring enzyme APP7_0531 PF02817 e3 binding domain APP7_0532 PF16870 2-oxoglutarate dehydrogenase C-terminal APP7_0532 PF16078 2-oxoglutarate dehydrogenase N-terminus APP7_0532 PF02779 Transketolase, pyrimidine binding domain APP7_0532 PF00676 Dehydrogenase E1 component APP7_0533 PF00005 ABC transporter APP7_0534 PF01551 Peptidase family M23 APP7_0534 PF04225 Opacity-associated protein A LysM-like domain APP7_0535 PF13098 Thioredoxin-like domain APP7_0535 PF10411 Disulfide bond isomerase protein N-terminus APP7_0536 PF17768 RecJ OB domain APP7_0536 PF02272 DHHA1 domain APP7_0536 PF01368 DHH family APP7_0537 PF00691 OmpA family APP7_0537 PF01389 OmpA-like transmembrane domain APP7_0539 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP7_0539 PF07730 Histidine kinase APP7_0539 PF00672 HAMP domain APP7_0539 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term APP7_0541 PF01725 Ham1 family APP7_0542 PF01906 Putative heavy-metal-binding APP7_0543 PF01268 Formate--tetrahydrofolate ligase APP7_0544 PF03692 Putative zinc- or iron-chelating domain APP7_0545 PF00106 short chain dehydrogenase APP7_0546 PF00291 Pyridoxal-phosphate dependent enzyme APP7_0547 PF00290 Tryptophan synthase alpha chain APP7_0548 PF12441 CopG antitoxin of type II toxin-antitoxin system APP7_0550 PF01367 5'-3' exonuclease, C-terminal SAM fold APP7_0550 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain APP7_0550 PF00476 DNA polymerase family A APP7_0550 PF01612 3'-5' exonuclease APP7_0552 PF03548 Outer membrane lipoprotein carrier protein LolA APP7_0553 PF01371 Trp repressor protein APP7_0554 PF00912 Transglycosylase APP7_0555 PF02627 Carboxymuconolactone decarboxylase family APP7_0561 PF00881 Nitroreductase family APP7_0562 PF18030 RimK PreATP-grasp domain APP7_0562 PF08443 RimK-like ATP-grasp domain APP7_0563 PF02698 DUF218 domain APP7_0564 PF01515 Phosphate acetyl/butaryl transferase APP7_0564 PF03949 Malic enzyme, NAD binding domain APP7_0564 PF00390 Malic enzyme, N-terminal domain APP7_0565 PF01386 Ribosomal L25p family APP7_0566 PF06226 Protein of unknown function (DUF1007) APP7_0567 PF03824 High-affinity nickel-transport protein APP7_0568 PF01235 Sodium:alanine symporter family APP7_0569 PF00005 ABC transporter APP7_0570 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0571 PF00899 ThiF family APP7_0572 PF00899 ThiF family APP7_0573 PF02597 ThiS family APP7_0574 PF05690 Thiazole biosynthesis protein ThiG APP7_0575 PF05690 Thiazole biosynthesis protein ThiG APP7_0576 PF06968 Biotin and Thiamin Synthesis associated domain APP7_0576 PF04055 Radical SAM superfamily APP7_0577 PF03070 TENA/THI-4/PQQC family APP7_0578 PF09084 NMT1/THI5 like APP7_0579 PF09084 NMT1/THI5 like APP7_0580 PF08543 Phosphomethylpyrimidine kinase APP7_0581 PF08543 Phosphomethylpyrimidine kinase APP7_0582 PF02581 Thiamine monophosphate synthase APP7_0583 PF03144 Elongation factor Tu domain 2 APP7_0583 PF06421 GTP-binding protein LepA C-terminus APP7_0583 PF00679 Elongation factor G C-terminus APP7_0583 PF00009 Elongation factor Tu GTP binding domain APP7_0584 PF10502 Signal peptidase, peptidase S26 APP7_0585 PF14622 Ribonuclease-III-like APP7_0585 PF00035 Double-stranded RNA binding motif APP7_0586 PF07650 KH domain APP7_0586 PF01926 50S ribosome-binding GTPase APP7_0587 PF02565 Recombination protein O C terminal APP7_0587 PF11967 Recombination protein O N terminal APP7_0593 PF00437 Type II/IV secretion system protein APP7_0596 PF00263 Bacterial type II and III secretion system protein APP7_0596 PF03958 Bacterial type II/III secretion system short domain APP7_0601 PF00271 Helicase conserved C-terminal domain APP7_0601 PF00270 DEAD/DEAH box helicase APP7_0603 PF05872 Bacterial protein of unknown function (DUF853) APP7_0605 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0609 PF00005 ABC transporter APP7_0609 PF06472 ABC transporter transmembrane region 2 APP7_0610 PF00318 Ribosomal protein S2 APP7_0611 PF00889 Elongation factor TS APP7_0612 PF00884 Sulfatase APP7_0613 PF00696 Amino acid kinase family APP7_0614 PF01765 Ribosome recycling factor APP7_0615 PF00155 Aminotransferase class I and II APP7_0615 PF00392 Bacterial regulatory proteins, gntR family APP7_0616 PF01680 SOR/SNZ family APP7_0617 PF01174 SNO glutamine amidotransferase family APP7_0618 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APP7_0619 PF03880 DbpA RNA binding domain APP7_0619 PF00270 DEAD/DEAH box helicase APP7_0619 PF00271 Helicase conserved C-terminal domain APP7_0621 PF00013 KH domain APP7_0621 PF03725 3' exoribonuclease family, domain 2 APP7_0621 PF00575 S1 RNA binding domain APP7_0621 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain APP7_0621 PF01138 3' exoribonuclease family, domain 1 APP7_0622 PF00521 DNA gyrase/topoisomerase IV, subunit A APP7_0622 PF03989 DNA gyrase C-terminal domain, beta-propeller APP7_0623 PF17192 MukF middle domain APP7_0623 PF03882 MukF winged-helix domain APP7_0623 PF17193 MukF C-terminal domain APP7_0624 PF04288 MukE-like family APP7_0625 PF04310 MukB N-terminal APP7_0625 PF16330 MukB hinge domain APP7_0626 PF07690 Major Facilitator Superfamily APP7_0627 PF11893 Domain of unknown function (DUF3413) APP7_0627 PF00884 Sulfatase APP7_0628 PF07208 Protein of unknown function (DUF1414) APP7_0629 PF00440 Bacterial regulatory proteins, tetR family APP7_0630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APP7_0631 PF00873 AcrB/AcrD/AcrF family APP7_0632 PF00873 AcrB/AcrD/AcrF family APP7_0633 PF12804 MobA-like NTP transferase domain APP7_0633 PF00132 Bacterial transferase hexapeptide (six repeats) APP7_0635 PF08942 Domain of unknown function (DUF1919) APP7_0636 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APP7_0636 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APP7_0636 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APP7_0636 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APP7_0637 PF02540 NAD synthase APP7_0637 PF00958 GMP synthase C terminal domain APP7_0637 PF00117 Glutamine amidotransferase class-I APP7_0639 PF00478 IMP dehydrogenase / GMP reductase domain APP7_0639 PF00571 CBS domain APP7_0640 PF01728 FtsJ-like methyltransferase APP7_0641 PF00004 ATPase family associated with various cellular activities (AAA) APP7_0641 PF01434 Peptidase family M41 APP7_0641 PF17862 AAA+ lid domain APP7_0641 PF06480 FtsH Extracellular APP7_0642 PF03222 Tryptophan/tyrosine permease family APP7_0643 PF03222 Tryptophan/tyrosine permease family APP7_0644 PF01966 HD domain APP7_0644 PF08335 GlnD PII-uridylyltransferase APP7_0645 PF06295 Protein of unknown function (DUF1043) APP7_0646 PF00572 Ribosomal protein L13 APP7_0647 PF00380 Ribosomal protein S9/S16 APP7_0648 PF03883 Peroxide stress protein YaaA APP7_0650 PF16916 Dimerisation domain of Zinc Transporter APP7_0650 PF01545 Cation efflux family APP7_0651 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) APP7_0652 PF00375 Sodium:dicarboxylate symporter family APP7_0653 PF00881 Nitroreductase family APP7_0654 PF01409 tRNA synthetases class II core domain (F) APP7_0654 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain APP7_0655 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain APP7_0655 PF03483 B3/4 domain APP7_0655 PF03147 Ferredoxin-fold anticodon binding domain APP7_0655 PF03484 tRNA synthetase B5 domain APP7_0655 PF01588 Putative tRNA binding domain APP7_0656 PF00216 Bacterial DNA-binding protein APP7_0657 PF00877 NlpC/P60 family APP7_0658 PF00665 Integrase core domain APP7_0658 PF13333 Integrase core domain APP7_0661 PF00480 ROK family APP7_0661 PF01047 MarR family APP7_0662 PF00570 HRDC domain APP7_0662 PF01612 3'-5' exonuclease APP7_0663 PF01037 Lrp/AsnC ligand binding domain APP7_0664 PF01580 FtsK/SpoIIIE family APP7_0664 PF09397 Ftsk gamma domain APP7_0664 PF17854 FtsK alpha domain APP7_0664 PF13491 4TM region of DNA translocase FtsK/SpoIIIE APP7_0665 PF04228 Putative neutral zinc metallopeptidase APP7_0666 PF00793 DAHP synthetase I family APP7_0667 PF00814 Glycoprotease family APP7_0668 PF00265 Thymidine kinase APP7_0669 PF06005 Cell division protein ZapB APP7_0670 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded APP7_0671 PF01784 NIF3 (NGG1p interacting factor 3) APP7_0672 PF02687 FtsX-like permease family APP7_0672 PF12704 MacB-like periplasmic core domain APP7_0672 PF00005 ABC transporter APP7_0673 PF00512 His Kinase A (phospho-acceptor) domain APP7_0673 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP7_0673 PF00672 HAMP domain APP7_0673 PF16527 Two-component sensor protein CpxA, periplasmic domain APP7_0674 PF00486 Transcriptional regulatory protein, C terminal APP7_0674 PF00072 Response regulator receiver domain APP7_0675 PF03819 MazG nucleotide pyrophosphohydrolase domain APP7_0676 PF17848 Acetyl-coA carboxylase zinc finger domain APP7_0676 PF01039 Carboxyl transferase domain APP7_0677 PF08245 Mur ligase middle domain APP7_0678 PF17384 RimP C-terminal SH3 domain APP7_0678 PF02576 RimP N-terminal domain APP7_0679 PF13184 NusA-like KH domain APP7_0679 PF08529 NusA N-terminal domain APP7_0679 PF00575 S1 RNA binding domain APP7_0680 PF00009 Elongation factor Tu GTP binding domain APP7_0680 PF11987 Translation-initiation factor 2 APP7_0680 PF04760 Translation initiation factor IF-2, N-terminal region APP7_0681 PF02033 Ribosome-binding factor A APP7_0682 PF16198 tRNA pseudouridylate synthase B C-terminal domain APP7_0682 PF09157 Pseudouridine synthase II TruB, C-terminal APP7_0682 PF01509 TruB family pseudouridylate synthase (N terminal domain) APP7_0683 PF13406 Transglycosylase SLT domain APP7_0684 PF07411 Domain of unknown function (DUF1508) APP7_0685 PF01515 Phosphate acetyl/butaryl transferase APP7_0685 PF07085 DRTGG domain APP7_0686 PF00871 Acetokinase family APP7_0687 PF02872 5'-nucleotidase, C-terminal domain APP7_0687 PF00149 Calcineurin-like phosphoesterase APP7_0689 PF13609 Gram-negative porin APP7_0691 PF00483 Nucleotidyl transferase APP7_0692 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APP7_0692 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APP7_0692 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APP7_0692 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APP7_0693 PF02599 Global regulator protein family APP7_0694 PF02272 DHHA1 domain APP7_0694 PF01411 tRNA synthetases class II (A) APP7_0694 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain APP7_0695 PF00582 Universal stress protein family APP7_0696 PF00027 Cyclic nucleotide-binding domain APP7_0696 PF00325 Bacterial regulatory proteins, crp family APP7_0697 PF04386 Stringent starvation protein B APP7_0698 PF00043 Glutathione S-transferase, C-terminal domain APP7_0698 PF02798 Glutathione S-transferase, N-terminal domain APP7_0699 PF00731 AIR carboxylase APP7_0700 PF17763 Glutaminase/Asparaginase C-terminal domain APP7_0700 PF00710 Asparaginase, N-terminal APP7_0701 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain APP7_0701 PF02222 ATP-grasp domain APP7_0702 PF00155 Aminotransferase class I and II APP7_0703 PF00557 Metallopeptidase family M24 APP7_0703 PF05195 Aminopeptidase P, N-terminal domain APP7_0704 PF13635 Domain of unknown function (DUF4143) APP7_0704 PF13173 AAA domain APP7_0705 PF01850 PIN domain APP7_0707 PF00271 Helicase conserved C-terminal domain APP7_0707 PF04851 Type III restriction enzyme, res subunit APP7_0707 PF02151 UvrB/uvrC motif APP7_0707 PF17757 UvrB interaction domain APP7_0707 PF12344 Ultra-violet resistance protein B APP7_0708 PF09375 Imelysin APP7_0709 PF04261 Dyp-type peroxidase family APP7_0709 PF10518 TAT (twin-arginine translocation) pathway signal sequence APP7_0711 PF02811 PHP domain APP7_0713 PF00929 Exonuclease APP7_0713 PF08411 Exonuclease C-terminal APP7_0714 PF00654 Voltage gated chloride channel APP7_0715 PF01336 OB-fold nucleic acid binding domain APP7_0715 PF00152 tRNA synthetases class II (D, K and N) APP7_0716 PF04055 Radical SAM superfamily APP7_0718 PF01132 Elongation factor P (EF-P) OB domain APP7_0718 PF08207 Elongation factor P (EF-P) KOW-like domain APP7_0718 PF09285 Elongation factor P, C-terminal APP7_0719 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain APP7_0719 PF00749 tRNA synthetases class I (E and Q), catalytic domain APP7_0720 PF07690 Major Facilitator Superfamily APP7_0721 PF14718 Soluble lytic murein transglycosylase L domain APP7_0721 PF01464 Transglycosylase SLT domain APP7_0722 PF00156 Phosphoribosyl transferase domain APP7_0723 PF01053 Cys/Met metabolism PLP-dependent enzyme APP7_0724 PF05173 Dihydrodipicolinate reductase, C-terminus APP7_0724 PF01113 Dihydrodipicolinate reductase, N-terminus APP7_0727 PF01728 FtsJ-like methyltransferase APP7_0727 PF18125 RlmM ferredoxin-like domain APP7_0728 PF04241 Protein of unknown function (DUF423) APP7_0729 PF01565 FAD binding domain APP7_0729 PF09330 D-lactate dehydrogenase, membrane binding APP7_0730 PF00384 Molybdopterin oxidoreductase APP7_0730 PF18364 Molybdopterin oxidoreductase N-terminal domain APP7_0730 PF01568 Molydopterin dinucleotide binding domain APP7_0731 PF03264 NapC/NirT cytochrome c family, N-terminal region APP7_0732 PF04055 Radical SAM superfamily APP7_0732 PF06463 Molybdenum Cofactor Synthesis C APP7_0733 PF01967 MoaC family APP7_0734 PF02597 ThiS family APP7_0735 PF02391 MoaE protein APP7_0736 PF02130 Uncharacterized protein family UPF0054 APP7_0737 PF13718 GNAT acetyltransferase 2 APP7_0737 PF05127 Helicase APP7_0737 PF17176 tRNA-binding domain APP7_0738 PF08272 Topoisomerase I zinc-ribbon-like APP7_0738 PF01751 Toprim domain APP7_0738 PF01131 DNA topoisomerase APP7_0738 PF01396 Topoisomerase DNA binding C4 zinc finger APP7_0739 PF03466 LysR substrate binding domain APP7_0739 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_0740 PF00696 Amino acid kinase family APP7_0740 PF00583 Acetyltransferase (GNAT) family APP7_0741 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APP7_0742 PF00155 Aminotransferase class I and II APP7_0743 PF01053 Cys/Met metabolism PLP-dependent enzyme APP7_0744 PF00266 Aminotransferase class-V APP7_0745 PF00271 Helicase conserved C-terminal domain APP7_0745 PF00176 SNF2 family N-terminal domain APP7_0747 PF01555 DNA methylase APP7_0748 PF01418 Helix-turn-helix domain, rpiR family APP7_0748 PF01380 SIS domain APP7_0749 PF04074 YhcH/YjgK/YiaL APP7_0750 PF02541 Ppx/GppA phosphatase family APP7_0751 PF04363 Protein of unknown function (DUF496) APP7_0752 PF00696 Amino acid kinase family APP7_0752 PF01842 ACT domain APP7_0753 PF03477 ATP cone domain APP7_0754 PF05166 YcgL domain APP7_0755 PF03796 DnaB-like helicase C terminal domain APP7_0755 PF00772 DnaB-like helicase N terminal domain APP7_0756 PF01497 Periplasmic binding protein APP7_0757 PF01032 FecCD transport family APP7_0758 PF01032 FecCD transport family APP7_0759 PF00005 ABC transporter APP7_0760 PF01865 Protein of unknown function DUF47 APP7_0761 PF01384 Phosphate transporter family APP7_0762 PF08239 Bacterial SH3 domain APP7_0764 PF01814 Hemerythrin HHE cation binding domain APP7_0765 PF01702 Queuine tRNA-ribosyltransferase APP7_0768 PF00313 'Cold-shock' DNA-binding domain APP7_0769 PF00484 Carbonic anhydrase APP7_0770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP7_0770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APP7_0770 PF00205 Thiamine pyrophosphate enzyme, central domain APP7_0771 PF10369 Small subunit of acetolactate synthase APP7_0772 PF01523 Putative modulator of DNA gyrase APP7_0773 PF04751 Protein of unknown function (DUF615) APP7_0774 PF04247 Invasion gene expression up-regulator, SirB APP7_0775 PF02441 Flavoprotein APP7_0776 PF04474 Protein of unknown function (DUF554) APP7_0778 PF01253 Translation initiation factor SUI1 APP7_0779 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APP7_0780 PF18073 Rubredoxin metal binding domain APP7_0781 PF06305 Lipopolysaccharide assembly protein A domain APP7_0782 PF00216 Bacterial DNA-binding protein APP7_0783 PF00575 S1 RNA binding domain APP7_0784 PF02224 Cytidylate kinase APP7_0785 PF13180 PDZ domain APP7_0786 PF13180 PDZ domain APP7_0787 PF03840 Preprotein translocase SecG subunit APP7_0788 PF01131 DNA topoisomerase APP7_0788 PF01751 Toprim domain APP7_0789 PF00245 Alkaline phosphatase APP7_0790 PF03411 Penicillin-insensitive murein endopeptidase APP7_0791 PF01264 Chorismate synthase APP7_0792 PF12795 Mechanosensitive ion channel porin domain APP7_0792 PF12794 Mechanosensitive ion channel inner membrane domain 1 APP7_0792 PF00924 Mechanosensitive ion channel APP7_0793 PF12794 Mechanosensitive ion channel inner membrane domain 1 APP7_0793 PF00924 Mechanosensitive ion channel APP7_0793 PF12795 Mechanosensitive ion channel porin domain APP7_0794 PF00501 AMP-binding enzyme APP7_0795 PF03925 SeqA protein C-terminal domain APP7_0795 PF17206 SeqA protein N-terminal domain APP7_0796 PF00561 alpha/beta hydrolase fold APP7_0797 PF13649 Methyltransferase domain APP7_0801 PF00575 S1 RNA binding domain APP7_0801 PF00773 RNB domain APP7_0801 PF08206 Ribonuclease B OB domain APP7_0802 PF03788 LrgA family APP7_0803 PF04172 LrgB-like family APP7_0804 PF00149 Calcineurin-like phosphoesterase APP7_0805 PF13356 Arm DNA-binding domain APP7_0805 PF00589 Phage integrase family APP7_0815 PF03354 Phage Terminase APP7_0823 PF13649 Methyltransferase domain APP7_0824 PF01594 AI-2E family transporter APP7_0825 PF01933 Uncharacterised protein family UPF0052 APP7_0826 PF02547 Queuosine biosynthesis protein APP7_0827 PF03772 Competence protein APP7_0827 PF13567 Domain of unknown function (DUF4131) APP7_0827 PF00753 Metallo-beta-lactamase superfamily APP7_0828 PF00375 Sodium:dicarboxylate symporter family APP7_0829 PF01219 Prokaryotic diacylglycerol kinase APP7_0830 PF02872 5'-nucleotidase, C-terminal domain APP7_0830 PF00149 Calcineurin-like phosphoesterase APP7_0832 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APP7_0832 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP7_0833 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) APP7_0833 PF00364 Biotin-requiring enzyme APP7_0833 PF02817 e3 binding domain APP7_0834 PF17831 Pyruvate dehydrogenase E1 component middle domain APP7_0834 PF00456 Transketolase, thiamine diphosphate binding domain APP7_0835 PF01180 Dihydroorotate dehydrogenase APP7_0836 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase APP7_0836 PF14572 Phosphoribosyl synthetase-associated domain APP7_0837 PF00288 GHMP kinases N terminal domain APP7_0837 PF08544 GHMP kinases C terminal APP7_0838 PF03550 Outer membrane lipoprotein LolB APP7_0839 PF00664 ABC transporter transmembrane region APP7_0839 PF00005 ABC transporter APP7_0840 PF04172 LrgB-like family APP7_0842 PF06733 DEAD_2 APP7_0842 PF13307 Helicase C-terminal domain APP7_0844 PF17760 UvrA interaction domain APP7_0844 PF17755 UvrA DNA-binding domain APP7_0845 PF00436 Single-strand binding protein family APP7_0849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_0849 PF03466 LysR substrate binding domain APP7_0850 PF03060 Nitronate monooxygenase APP7_0852 PF04237 YjbR APP7_0853 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APP7_0853 PF00005 ABC transporter APP7_0854 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0854 PF12911 N-terminal TM domain of oligopeptide transport permease C APP7_0855 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0856 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP7_0857 PF18024 Helix-turn-helix domain APP7_0857 PF00158 Sigma-54 interaction domain APP7_0858 PF13580 SIS domain APP7_0859 PF01293 Phosphoenolpyruvate carboxykinase APP7_0860 PF04977 Septum formation initiator APP7_0861 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase APP7_0862 PF02542 YgbB family APP7_0863 PF00884 Sulfatase APP7_0864 PF03476 MOSC N-terminal beta barrel domain APP7_0864 PF03473 MOSC domain APP7_0864 PF00111 2Fe-2S iron-sulfur cluster binding domain APP7_0865 PF02609 Exonuclease VII small subunit APP7_0866 PF00348 Polyprenyl synthetase APP7_0868 PF00152 tRNA synthetases class II (D, K and N) APP7_0868 PF01336 OB-fold nucleic acid binding domain APP7_0869 PF10150 Ribonuclease E/G family APP7_0869 PF00575 S1 RNA binding domain APP7_0870 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding APP7_0870 PF18381 YcaO cyclodehydratase C-terminal domain APP7_0871 PF08003 Protein of unknown function (DUF1698) APP7_0873 PF03562 MltA specific insert domain APP7_0873 PF06725 3D domain APP7_0874 PF02601 Exonuclease VII, large subunit APP7_0874 PF13742 OB-fold nucleic acid binding domain APP7_0875 PF00576 HIUase/Transthyretin family APP7_0876 PF00356 Bacterial regulatory proteins, lacI family APP7_0876 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APP7_0877 PF09335 SNARE associated Golgi protein APP7_0878 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP7_0878 PF00986 DNA gyrase B subunit, carboxyl terminus APP7_0878 PF01751 Toprim domain APP7_0878 PF18053 DNA gyrase B subunit insert domain APP7_0878 PF00204 DNA gyrase B APP7_0879 PF01040 UbiA prenyltransferase family APP7_0880 PF00455 DeoR C terminal sensor domain APP7_0880 PF08220 DeoR-like helix-turn-helix domain APP7_0881 PF00206 Lyase APP7_0881 PF08328 Adenylosuccinate lyase C-terminal APP7_0882 PF04356 Protein of unknown function (DUF489) APP7_0883 PF00664 ABC transporter transmembrane region APP7_0883 PF00005 ABC transporter APP7_0884 PF00005 ABC transporter APP7_0884 PF00664 ABC transporter transmembrane region APP7_0885 PF04357 TamB, inner membrane protein subunit of TAM complex APP7_0886 PF17243 POTRA domain TamA domain 1 APP7_0886 PF01103 Surface antigen APP7_0887 PF04748 Divergent polysaccharide deacetylase APP7_0888 PF01551 Peptidase family M23 APP7_0889 PF00300 Histidine phosphatase superfamily (branch 1) APP7_0891 PF00485 Phosphoribulokinase / Uridine kinase family APP7_0892 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) APP7_0893 PF00440 Bacterial regulatory proteins, tetR family APP7_0893 PF14278 Transcriptional regulator C-terminal region APP7_0894 PF13533 Biotin-lipoyl like APP7_0895 PF00005 ABC transporter APP7_0897 PF02321 Outer membrane efflux protein APP7_0898 PF02233 NAD(P) transhydrogenase beta subunit APP7_0899 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch APP7_0899 PF05222 Alanine dehydrogenase/PNT, N-terminal domain APP7_0899 PF01262 Alanine dehydrogenase/PNT, C-terminal domain APP7_0900 PF00588 SpoU rRNA Methylase family APP7_0901 PF14489 QueF-like protein APP7_0901 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term APP7_0903 PF00578 AhpC/TSA family APP7_0904 PF06969 HemN C-terminal domain APP7_0904 PF04055 Radical SAM superfamily APP7_0905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP7_0906 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0907 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0908 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APP7_0908 PF00005 ABC transporter APP7_0909 PF00005 ABC transporter APP7_0909 PF08352 Oligopeptide/dipeptide transporter, C-terminal region APP7_0910 PF00890 FAD binding domain APP7_0911 PF01717 Cobalamin-independent synthase, Catalytic domain APP7_0912 PF02219 Methylenetetrahydrofolate reductase APP7_0913 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP7_0914 PF03222 Tryptophan/tyrosine permease family APP7_0915 PF03313 Serine dehydratase alpha chain APP7_0915 PF03315 Serine dehydratase beta chain APP7_0916 PF01266 FAD dependent oxidoreductase APP7_0916 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APP7_0917 PF01266 FAD dependent oxidoreductase APP7_0917 PF05430 S-adenosyl-L-methionine-dependent methyltransferase APP7_0918 PF00218 Indole-3-glycerol phosphate synthase APP7_0918 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase APP7_0919 PF12728 Helix-turn-helix domain APP7_0919 PF02661 Fic/DOC family APP7_0920 PF04287 tRNA pseudouridine synthase C APP7_0921 PF00849 RNA pseudouridylate synthase APP7_0922 PF03701 Uncharacterised protein family (UPF0181) APP7_0924 PF01928 CYTH domain APP7_0925 PF04317 YcjX-like family, DUF463 APP7_0926 PF01668 SmpB protein APP7_0927 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APP7_0927 PF02403 Seryl-tRNA synthetase N-terminal domain APP7_0928 PF07687 Peptidase dimerisation domain APP7_0928 PF01546 Peptidase family M20/M25/M40 APP7_0929 PF03606 C4-dicarboxylate anaerobic carrier APP7_0930 PF03575 Peptidase family S51 APP7_0931 PF08264 Anticodon-binding domain of tRNA APP7_0931 PF13603 Leucyl-tRNA synthetase, Domain 2 APP7_0931 PF00133 tRNA synthetases class I (I, L, M and V) APP7_0932 PF04390 Lipopolysaccharide-assembly APP7_0933 PF14840 Processivity clamp loader gamma complex DNA pol III C-term APP7_0933 PF06144 DNA polymerase III, delta subunit APP7_0934 PF03884 DNA gyrase inhibitor YacG APP7_0935 PF01121 Dephospho-CoA kinase APP7_0937 PF00482 Type II secretion system (T2SS), protein F APP7_0938 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain APP7_0938 PF00437 Type II/IV secretion system protein APP7_0939 PF07963 Prokaryotic N-terminal methylation motif APP7_0940 PF18073 Rubredoxin metal binding domain APP7_0942 PF00186 Dihydrofolate reductase APP7_0943 PF00696 Amino acid kinase family APP7_0943 PF01472 PUA domain APP7_0944 PF01925 Sulfite exporter TauE/SafE APP7_0945 PF00730 HhH-GPD superfamily base excision DNA repair protein APP7_0945 PF10576 Iron-sulfur binding domain of endonuclease III APP7_0945 PF00633 Helix-hairpin-helix motif APP7_0946 PF00108 Thiolase, N-terminal domain APP7_0946 PF02803 Thiolase, C-terminal domain APP7_0947 PF00378 Enoyl-CoA hydratase/isomerase APP7_0947 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain APP7_0947 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain APP7_0950 PF02634 FdhD/NarQ family APP7_0951 PF01568 Molydopterin dinucleotide binding domain APP7_0951 PF00384 Molybdopterin oxidoreductase APP7_0951 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APP7_0952 PF01568 Molydopterin dinucleotide binding domain APP7_0952 PF00384 Molybdopterin oxidoreductase APP7_0952 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APP7_0953 PF09163 Formate dehydrogenase N, transmembrane APP7_0953 PF13247 4Fe-4S dicluster domain APP7_0954 PF01292 Prokaryotic cytochrome b561 APP7_0955 PF04216 Protein involved in formate dehydrogenase formation APP7_0956 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain APP7_0956 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain APP7_0958 PF00701 Dihydrodipicolinate synthetase family APP7_0959 PF03279 Bacterial lipid A biosynthesis acyltransferase APP7_0960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein APP7_0961 PF01416 tRNA pseudouridine synthase APP7_0962 PF01227 GTP cyclohydrolase I APP7_0965 PF12464 Maltose acetyltransferase APP7_0965 PF14602 Hexapeptide repeat of succinyl-transferase APP7_0966 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APP7_0967 PF02129 X-Pro dipeptidyl-peptidase (S15 family) APP7_0968 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_0968 PF03466 LysR substrate binding domain APP7_0969 PF03180 NLPA lipoprotein APP7_0970 PF03180 NLPA lipoprotein APP7_0971 PF00528 Binding-protein-dependent transport system inner membrane component APP7_0972 PF00005 ABC transporter APP7_0972 PF09383 NIL domain APP7_0973 PF01406 tRNA synthetases class I (C) catalytic domain APP7_0973 PF09190 DALR domain APP7_0974 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APP7_0975 PF01966 HD domain APP7_0975 PF12627 Probable RNA and SrmB- binding site of polymerase A APP7_0975 PF01743 Poly A polymerase head domain APP7_0977 PF13333 Integrase core domain APP7_0977 PF00665 Integrase core domain APP7_0978 PF07715 TonB-dependent Receptor Plug Domain APP7_0978 PF00593 TonB dependent receptor APP7_0981 PF04384 Iron-sulphur cluster assembly APP7_0982 PF00111 2Fe-2S iron-sulfur cluster binding domain APP7_0983 PF00012 Hsp70 protein APP7_0984 PF10946 Protein of unknown function DUF2625 APP7_0986 PF07743 HSCB C-terminal oligomerisation domain APP7_0987 PF01521 Iron-sulphur cluster biosynthesis APP7_0988 PF01592 NifU-like N terminal domain APP7_0989 PF00266 Aminotransferase class-V APP7_0990 PF02082 Transcriptional regulator APP7_0991 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) APP7_0992 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain APP7_0992 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain APP7_0993 PF00072 Response regulator receiver domain APP7_0993 PF00989 PAS fold APP7_0993 PF01627 Hpt domain APP7_0993 PF18415 Histidine kinase receptor ArcB trans-membrane domain APP7_0993 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP7_0993 PF00512 His Kinase A (phospho-acceptor) domain APP7_0995 PF01713 Smr domain APP7_0997 PF08241 Methyltransferase domain APP7_0998 PF04301 Protein of unknown function (DUF452) APP7_0999 PF00155 Aminotransferase class I and II APP7_1000 PF00202 Aminotransferase class-III APP7_1001 PF05175 Methyltransferase small domain APP7_1002 PF03449 Transcription elongation factor, N-terminal APP7_1002 PF01272 Transcription elongation factor, GreA/GreB, C-term APP7_1003 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family APP7_1007 PF00664 ABC transporter transmembrane region APP7_1007 PF00005 ABC transporter APP7_1007 PF03412 Peptidase C39 family APP7_1008 PF08339 RTX C-terminal domain APP7_1008 PF02382 N-terminal domain in RTX protein APP7_1008 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) APP7_1009 PF02794 RTX toxin acyltransferase family APP7_1010 PF13718 GNAT acetyltransferase 2 APP7_1010 PF17176 tRNA-binding domain APP7_1010 PF05127 Helicase APP7_1011 PF01808 AICARFT/IMPCHase bienzyme APP7_1011 PF02142 MGS-like domain APP7_1014 PF13332 Hemagglutinin repeat APP7_1014 PF05860 haemagglutination activity domain APP7_1014 PF13018 Extended Signal Peptide of Type V secretion system APP7_1014 PF04829 Pre-toxin domain with VENN motif APP7_1015 PF17287 POTRA domain APP7_1015 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APP7_1015 PF08479 POTRA domain, ShlB-type APP7_1016 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB APP7_1016 PF08479 POTRA domain, ShlB-type APP7_1016 PF17287 POTRA domain APP7_1017 PF04453 LPS transport system D APP7_1017 PF03968 OstA-like protein APP7_1018 PF06969 HemN C-terminal domain APP7_1018 PF04055 Radical SAM superfamily APP7_1020 PF04220 Der GTPase activator (YihI) APP7_1021 PF02080 TrkA-C domain APP7_1021 PF06826 Predicted Permease Membrane Region APP7_1022 PF03616 Sodium/glutamate symporter APP7_1023 PF06062 Uncharacterised protein family (UPF0231) APP7_1024 PF08335 GlnD PII-uridylyltransferase APP7_1024 PF03710 Glutamate-ammonia ligase adenylyltransferase APP7_1025 PF03795 YCII-related domain APP7_1026 PF03061 Thioesterase superfamily APP7_1027 PF04279 Intracellular septation protein A APP7_1029 PF04217 Protein of unknown function, DUF412 APP7_1031 PF01171 PP-loop family APP7_1032 PF13726 Na+-H+ antiporter family APP7_1032 PF03553 Na+/H+ antiporter family APP7_1033 PF03372 Endonuclease/Exonuclease/phosphatase family APP7_1034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_1034 PF03466 LysR substrate binding domain APP7_1038 PF01197 Ribosomal protein L31 APP7_1039 PF02780 Transketolase, C-terminal domain APP7_1039 PF00456 Transketolase, thiamine diphosphate binding domain APP7_1039 PF02779 Transketolase, pyrimidine binding domain APP7_1040 PF00183 Hsp90 protein APP7_1040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP7_1041 PF06628 Catalase-related immune-responsive APP7_1041 PF00199 Catalase APP7_1043 PF00665 Integrase core domain APP7_1043 PF13333 Integrase core domain APP7_1044 PF00149 Calcineurin-like phosphoesterase APP7_1045 PF02867 Ribonucleotide reductase, barrel domain APP7_1045 PF03477 ATP cone domain APP7_1045 PF00317 Ribonucleotide reductase, all-alpha domain APP7_1046 PF00268 Ribonucleotide reductase, small chain APP7_1047 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain APP7_1047 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain APP7_1048 PF08544 GHMP kinases C terminal APP7_1048 PF00288 GHMP kinases N terminal domain APP7_1048 PF10509 Galactokinase galactose-binding signature APP7_1049 PF01263 Aldose 1-epimerase APP7_1050 PF02836 Glycosyl hydrolases family 2, TIM barrel domain APP7_1050 PF00703 Glycosyl hydrolases family 2 APP7_1050 PF16353 Domain of unknown function(DUF4981) APP7_1050 PF02929 Beta galactosidase small chain APP7_1050 PF02837 Glycosyl hydrolases family 2, sugar binding domain APP7_1053 PF06594 Haemolysin-type calcium binding protein related domain APP7_1053 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) APP7_1054 PF13936 Helix-turn-helix domain APP7_1054 PF00665 Integrase core domain APP7_1057 PF10609 NUBPL iron-transfer P-loop NTPase APP7_1059 PF01914 MarC family integral membrane protein APP7_1060 PF13145 PPIC-type PPIASE domain APP7_1061 PF00999 Sodium/hydrogen exchanger family APP7_1062 PF00312 Ribosomal protein S15 APP7_1063 PF05661 Protein of unknown function (DUF808) APP7_1064 PF07219 HemY protein N-terminus APP7_1065 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase APP7_1066 PF02602 Uroporphyrinogen-III synthase HemD APP7_1067 PF03900 Porphobilinogen deaminase, C-terminal domain APP7_1067 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain APP7_1068 PF00171 Aldehyde dehydrogenase family APP7_1068 PF00465 Iron-containing alcohol dehydrogenase APP7_1069 PF00118 TCP-1/cpn60 chaperonin family APP7_1070 PF00166 Chaperonin 10 Kd subunit APP7_1071 PF01048 Phosphorylase superfamily APP7_1072 PF01791 DeoC/LacD family aldolase APP7_1073 PF01773 Na+ dependent nucleoside transporter N-terminus APP7_1073 PF07662 Na+ dependent nucleoside transporter C-terminus APP7_1073 PF07670 Nucleoside recognition APP7_1075 PF01081 KDPG and KHG aldolase APP7_1076 PF00294 pfkB family carbohydrate kinase APP7_1077 PF02614 Glucuronate isomerase APP7_1078 PF01055 Glycosyl hydrolases family 31 APP7_1078 PF13802 Galactose mutarotase-like APP7_1078 PF17137 Domain of unknown function (DUF5110) APP7_1078 PF16338 Domain of unknown function (DUF4968) APP7_1079 PF07729 FCD domain APP7_1079 PF00392 Bacterial regulatory proteins, gntR family APP7_1080 PF01641 SelR domain APP7_1080 PF01625 Peptide methionine sulfoxide reductase APP7_1081 PF00535 Glycosyl transferase family 2 APP7_1082 PF00535 Glycosyl transferase family 2 APP7_1084 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) APP7_1086 PF04230 Polysaccharide pyruvyl transferase APP7_1087 PF02698 DUF218 domain APP7_1088 PF17764 3′ DNA-binding domain (3′BD) APP7_1088 PF00271 Helicase conserved C-terminal domain APP7_1088 PF18074 Primosomal protein N C-terminal domain APP7_1088 PF18319 PriA DNA helicase Cys-rich region (CRR) domain APP7_1088 PF00270 DEAD/DEAH box helicase APP7_1089 PF00800 Prephenate dehydratase APP7_1089 PF01817 Chorismate mutase type II APP7_1090 PF01432 Peptidase family M3 APP7_1091 PF04055 Radical SAM superfamily APP7_1092 PF01228 Glycine radical APP7_1092 PF02901 Pyruvate formate lyase-like APP7_1093 PF01226 Formate/nitrite transporter APP7_1095 PF01435 Peptidase family M48 APP7_1096 PF11798 IMS family HHH motif APP7_1096 PF11799 impB/mucB/samB family C-terminal domain APP7_1096 PF00817 impB/mucB/samB family APP7_1097 PF03956 Lysine exporter LysO APP7_1098 PF00425 chorismate binding enzyme APP7_1099 PF00155 Aminotransferase class I and II APP7_1100 PF00892 EamA-like transporter family APP7_1101 PF00892 EamA-like transporter family APP7_1102 PF01810 LysE type translocator APP7_1103 PF04886 PT repeat APP7_1103 PF07715 TonB-dependent Receptor Plug Domain APP7_1103 PF00593 TonB dependent receptor APP7_1104 PF01243 Pyridoxamine 5'-phosphate oxidase APP7_1106 PF03918 Cytochrome C biogenesis protein APP7_1107 PF08534 Redoxin APP7_1108 PF01578 Cytochrome C assembly protein APP7_1108 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APP7_1109 PF00999 Sodium/hydrogen exchanger family APP7_1109 PF02254 TrkA-N domain APP7_1110 PF00999 Sodium/hydrogen exchanger family APP7_1110 PF02254 TrkA-N domain APP7_1111 PF12633 Adenylate cyclase NT domain APP7_1111 PF01295 Adenylate cyclase, class-I APP7_1112 PF00109 Beta-ketoacyl synthase, N-terminal domain APP7_1112 PF02801 Beta-ketoacyl synthase, C-terminal domain APP7_1115 PF00665 Integrase core domain APP7_1115 PF13276 HTH-like domain APP7_1115 PF13333 Integrase core domain APP7_1116 PF13333 Integrase core domain APP7_1116 PF00665 Integrase core domain APP7_1117 PF04076 Bacterial OB fold (BOF) protein APP7_1121 PF00072 Response regulator receiver domain APP7_1121 PF00486 Transcriptional regulatory protein, C terminal APP7_1122 PF08521 Two-component sensor kinase N-terminal APP7_1122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP7_1122 PF00512 His Kinase A (phospho-acceptor) domain APP7_1123 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) APP7_1124 PF02699 Preprotein translocase subunit APP7_1125 PF07549 SecD/SecF GG Motif APP7_1125 PF02355 Protein export membrane protein APP7_1125 PF13721 SecD export protein N-terminal TM region APP7_1126 PF07549 SecD/SecF GG Motif APP7_1126 PF02355 Protein export membrane protein APP7_1127 PF00210 Ferritin-like domain APP7_1128 PF00210 Ferritin-like domain APP7_1129 PF00860 Permease family APP7_1130 PF02545 Maf-like protein APP7_1132 PF02568 Thiamine biosynthesis protein (ThiI) APP7_1132 PF02926 THUMP domain APP7_1133 PF00709 Adenylosuccinate synthetase APP7_1134 PF01145 SPFH domain / Band 7 family APP7_1135 PF01145 SPFH domain / Band 7 family APP7_1136 PF00085 Thioredoxin APP7_1137 PF00860 Permease family APP7_1138 PF00438 S-adenosylmethionine synthetase, N-terminal domain APP7_1138 PF02772 S-adenosylmethionine synthetase, central domain APP7_1138 PF02773 S-adenosylmethionine synthetase, C-terminal domain APP7_1140 PF13520 Amino acid permease APP7_1141 PF13520 Amino acid permease APP7_1143 PF01546 Peptidase family M20/M25/M40 APP7_1143 PF07687 Peptidase dimerisation domain APP7_1144 PF03922 OmpW family APP7_1145 PF07724 AAA domain (Cdc48 subfamily) APP7_1145 PF00004 ATPase family associated with various cellular activities (AAA) APP7_1145 PF17871 AAA lid domain APP7_1145 PF10431 C-terminal, D2-small domain, of ClpB protein APP7_1145 PF02861 Clp amino terminal domain, pathogenicity island component APP7_1146 PF01758 Sodium Bile acid symporter family APP7_1147 PF03960 ArsC family APP7_1149 PF10415 Fumarase C C-terminus APP7_1149 PF00206 Lyase APP7_1151 PF02769 AIR synthase related protein, C-terminal domain APP7_1151 PF00586 AIR synthase related protein, N-terminal domain APP7_1152 PF07501 G5 domain APP7_1152 PF00746 LPXTG cell wall anchor motif APP7_1152 PF04650 YSIRK type signal peptide APP7_1152 PF00728 Glycosyl hydrolase family 20, catalytic domain APP7_1153 PF06508 Queuosine biosynthesis protein QueC APP7_1154 PF01242 6-pyruvoyl tetrahydropterin synthase APP7_1155 PF04055 Radical SAM superfamily APP7_1157 PF02789 Cytosol aminopeptidase family, N-terminal domain APP7_1157 PF00883 Cytosol aminopeptidase family, catalytic domain APP7_1159 PF03739 Lipopolysaccharide export system permease LptF/LptG APP7_1160 PF03739 Lipopolysaccharide export system permease LptF/LptG APP7_1161 PF01336 OB-fold nucleic acid binding domain APP7_1161 PF02811 PHP domain APP7_1161 PF17657 Bacterial DNA polymerase III alpha subunit finger domain APP7_1161 PF07733 Bacterial DNA polymerase III alpha NTPase domain APP7_1161 PF14579 Helix-hairpin-helix motif APP7_1162 PF02222 ATP-grasp domain APP7_1162 PF01370 NAD dependent epimerase/dehydratase family APP7_1163 PF01370 NAD dependent epimerase/dehydratase family APP7_1163 PF02222 ATP-grasp domain APP7_1164 PF01553 Acyltransferase APP7_1165 PF00717 Peptidase S24-like APP7_1165 PF01726 LexA DNA binding domain APP7_1166 PF02976 DNA mismatch repair enzyme MutH APP7_1167 PF03741 Integral membrane protein TerC family APP7_1168 PF00933 Glycosyl hydrolase family 3 N terminal domain APP7_1169 PF00665 Integrase core domain APP7_1169 PF13936 Helix-turn-helix domain APP7_1170 PF05958 tRNA (Uracil-5-)-methyltransferase APP7_1171 PF03952 Enolase, N-terminal domain APP7_1171 PF00113 Enolase, C-terminal TIM barrel domain APP7_1172 PF00293 NUDIX domain APP7_1173 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) APP7_1174 PF09382 RQC domain APP7_1174 PF16124 RecQ zinc-binding APP7_1174 PF00570 HRDC domain APP7_1174 PF00271 Helicase conserved C-terminal domain APP7_1174 PF00270 DEAD/DEAH box helicase APP7_1175 PF01491 Frataxin-like domain APP7_1176 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) APP7_1177 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) APP7_1178 PF00814 Glycoprotease family APP7_1179 PF13525 Outer membrane lipoprotein APP7_1180 PF01479 S4 domain APP7_1180 PF00849 RNA pseudouridylate synthase APP7_1181 PF14256 YwiC-like protein APP7_1182 PF00365 Phosphofructokinase APP7_1183 PF00266 Aminotransferase class-V APP7_1184 PF00565 Staphylococcal nuclease homologue APP7_1185 PF01235 Sodium:alanine symporter family APP7_1186 PF01594 AI-2E family transporter APP7_1189 PF04932 O-Antigen ligase APP7_1190 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) APP7_1190 PF00534 Glycosyl transferases group 1 APP7_1191 PF01467 Cytidylyltransferase-like APP7_1192 PF00929 Exonuclease APP7_1193 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE APP7_1194 PF01520 N-acetylmuramoyl-L-alanine amidase APP7_1194 PF01476 LysM domain APP7_1195 PF00342 Phosphoglucose isomerase APP7_1196 PF04380 Membrane fusogenic activity APP7_1197 PF08501 Shikimate dehydrogenase substrate binding domain APP7_1197 PF01488 Shikimate / quinate 5-dehydrogenase APP7_1197 PF18317 Shikimate 5'-dehydrogenase C-terminal domain APP7_1198 PF01300 Telomere recombination APP7_1201 PF02631 RecX family APP7_1202 PF00154 recA bacterial DNA recombination protein APP7_1203 PF01063 Amino-transferase class IV APP7_1204 PF00425 chorismate binding enzyme APP7_1205 PF02646 RmuC family APP7_1206 PF00117 Glutamine amidotransferase class-I APP7_1207 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APP7_1207 PF03625 Domain of unknown function DUF302 APP7_1208 PF01336 OB-fold nucleic acid binding domain APP7_1208 PF00152 tRNA synthetases class II (D, K and N) APP7_1208 PF02938 GAD domain APP7_1209 PF00293 NUDIX domain APP7_1210 PF01709 Transcriptional regulator APP7_1212 PF02075 Crossover junction endodeoxyribonuclease RuvC APP7_1213 PF05193 Peptidase M16 inactive domain APP7_1213 PF00675 Insulinase (Peptidase family M16) APP7_1214 PF01717 Cobalamin-independent synthase, Catalytic domain APP7_1214 PF08267 Cobalamin-independent synthase, N-terminal domain APP7_1215 PF00939 Sodium:sulfate symporter transmembrane region APP7_1216 PF03466 LysR substrate binding domain APP7_1216 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_1217 PF01298 C-lobe and N-lobe beta barrels of Tf-binding protein B APP7_1218 PF01479 S4 domain APP7_1218 PF00849 RNA pseudouridylate synthase APP7_1219 PF01300 Telomere recombination APP7_1220 PF04261 Dyp-type peroxidase family APP7_1221 PF00425 chorismate binding enzyme APP7_1221 PF04715 Anthranilate synthase component I, N terminal region APP7_1222 PF00117 Glutamine amidotransferase class-I APP7_1223 PF00591 Glycosyl transferase family, a/b domain APP7_1223 PF02885 Glycosyl transferase family, helical bundle domain APP7_1224 PF08241 Methyltransferase domain APP7_1225 PF16036 Chalcone isomerase-like APP7_1226 PF04325 Protein of unknown function (DUF465) APP7_1227 PF03948 Ribosomal protein L9, C-terminal domain APP7_1227 PF01281 Ribosomal protein L9, N-terminal domain APP7_1228 PF01084 Ribosomal protein S18 APP7_1229 PF00436 Single-strand binding protein family APP7_1230 PF01250 Ribosomal protein S6 APP7_1231 PF02843 Phosphoribosylglycinamide synthetase, C domain APP7_1231 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain APP7_1231 PF02844 Phosphoribosylglycinamide synthetase, N domain APP7_1232 PF04973 Nicotinamide mononucleotide transporter APP7_1233 PF09976 Tetratricopeptide repeat-like domain APP7_1234 PF13393 Histidyl-tRNA synthetase APP7_1234 PF03129 Anticodon binding domain APP7_1235 PF04551 GcpE protein APP7_1236 PF13464 Domain of unknown function (DUF4115) APP7_1237 PF01740 STAS domain APP7_1237 PF00916 Sulfate permease family APP7_1238 PF14698 Argininosuccinate lyase C-terminal APP7_1238 PF00206 Lyase APP7_1239 PF02894 Oxidoreductase family, C-terminal alpha/beta domain APP7_1239 PF01408 Oxidoreductase family, NAD-binding Rossmann fold APP7_1240 PF00999 Sodium/hydrogen exchanger family APP7_1240 PF02254 TrkA-N domain APP7_1243 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_1243 PF03466 LysR substrate binding domain APP7_1246 PF06719 AraC-type transcriptional regulator N-terminus APP7_1246 PF12833 Helix-turn-helix domain APP7_1247 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_1247 PF03466 LysR substrate binding domain APP7_1248 PF00724 NADH:flavin oxidoreductase / NADH oxidase family APP7_1249 PF00296 Luciferase-like monooxygenase APP7_1251 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APP7_1251 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase APP7_1252 PF00881 Nitroreductase family APP7_1253 PF01914 MarC family integral membrane protein APP7_1255 PF00756 Putative esterase APP7_1256 PF02798 Glutathione S-transferase, N-terminal domain APP7_1259 PF08240 Alcohol dehydrogenase GroES-like domain APP7_1259 PF00107 Zinc-binding dehydrogenase APP7_1260 PF02028 BCCT, betaine/carnitine/choline family transporter APP7_1263 PF03595 Voltage-dependent anion channel APP7_1264 PF13419 Haloacid dehalogenase-like hydrolase APP7_1266 PF00005 ABC transporter APP7_1266 PF00664 ABC transporter transmembrane region APP7_1267 PF02664 S-Ribosylhomocysteinase (LuxS) APP7_1268 PF02470 MlaD protein APP7_1269 PF01475 Ferric uptake regulator family APP7_1270 PF00258 Flavodoxin APP7_1271 PF01402 Ribbon-helix-helix protein, copG family APP7_1272 PF04073 Aminoacyl-tRNA editing domain APP7_1274 PF00860 Permease family APP7_1275 PF02635 DsrE/DsrF-like family APP7_1277 PF01176 Translation initiation factor 1A / IF-1 APP7_1278 PF10144 Bacterial virulence factor haemolysin APP7_1279 PF18429 Domain of unknown function (DUF5609) APP7_1280 PF04461 Protein of unknown function (DUF520) APP7_1282 PF00343 Carbohydrate phosphorylase APP7_1283 PF17874 MalT-like TPR region APP7_1283 PF00196 Bacterial regulatory proteins, luxR family APP7_1284 PF07148 Maltose operon periplasmic protein precursor (MalM) APP7_1285 PF02264 LamB porin APP7_1286 PF17912 MalK OB fold domain APP7_1286 PF00005 ABC transporter APP7_1287 PF01547 Bacterial extracellular solute-binding protein APP7_1288 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1288 PF14785 Maltose transport system permease protein MalF P2 domain APP7_1289 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1290 PF02446 4-alpha-glucanotransferase APP7_1291 PF02554 Carbon starvation protein CstA APP7_1292 PF01026 TatD related DNase APP7_1293 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP7_1293 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain APP7_1294 PF03350 Uncharacterized protein family, UPF0114 APP7_1295 PF00881 Nitroreductase family APP7_1298 PF00005 ABC transporter APP7_1299 PF01116 Fructose-bisphosphate aldolase class-II APP7_1300 PF00162 Phosphoglycerate kinase APP7_1301 PF00939 Sodium:sulfate symporter transmembrane region APP7_1302 PF00939 Sodium:sulfate symporter transmembrane region APP7_1303 PF00939 Sodium:sulfate symporter transmembrane region APP7_1304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP7_1304 PF00986 DNA gyrase B subunit, carboxyl terminus APP7_1304 PF00204 DNA gyrase B APP7_1304 PF01751 Toprim domain APP7_1305 PF00512 His Kinase A (phospho-acceptor) domain APP7_1305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase APP7_1306 PF00486 Transcriptional regulatory protein, C terminal APP7_1306 PF00072 Response regulator receiver domain APP7_1307 PF00005 ABC transporter APP7_1308 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1309 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1310 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1311 PF12849 PBP superfamily domain APP7_1312 PF09278 MerR, DNA binding APP7_1312 PF00376 MerR family regulatory protein APP7_1314 PF00403 Heavy-metal-associated domain APP7_1315 PF00403 Heavy-metal-associated domain APP7_1316 PF00106 short chain dehydrogenase APP7_1317 PF00881 Nitroreductase family APP7_1318 PF01343 Peptidase family S49 APP7_1319 PF00445 Ribonuclease T2 family APP7_1320 PF10263 SprT-like family APP7_1320 PF17283 SprT-like zinc ribbon domain APP7_1321 PF07992 Pyridine nucleotide-disulphide oxidoreductase APP7_1322 PF09371 Tex-like protein N-terminal domain APP7_1322 PF00575 S1 RNA binding domain APP7_1322 PF17674 HHH domain APP7_1322 PF16921 Tex protein YqgF-like domain APP7_1324 PF04055 Radical SAM superfamily APP7_1325 PF04055 Radical SAM superfamily APP7_1326 PF00749 tRNA synthetases class I (E and Q), catalytic domain APP7_1327 PF03966 Trm112p-like protein APP7_1328 PF02606 Tetraacyldisaccharide-1-P 4'-kinase APP7_1329 PF07724 AAA domain (Cdc48 subfamily) APP7_1329 PF06689 ClpX C4-type zinc finger APP7_1329 PF10431 C-terminal, D2-small domain, of ClpB protein APP7_1330 PF00574 Clp protease APP7_1331 PF02657 Fe-S metabolism associated domain APP7_1332 PF00929 Exonuclease APP7_1333 PF00005 ABC transporter APP7_1333 PF12848 ABC transporter APP7_1334 PF02627 Carboxymuconolactone decarboxylase family APP7_1337 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) APP7_1338 PF01722 BolA-like protein APP7_1340 PF05494 MlaC protein APP7_1341 PF02470 MlaD protein APP7_1342 PF02405 Permease MlaE APP7_1343 PF00005 ABC transporter APP7_1344 PF00595 PDZ domain APP7_1345 PF01370 NAD dependent epimerase/dehydratase family APP7_1345 PF08338 Domain of unknown function (DUF1731) APP7_1346 PF02863 Arginine repressor, C-terminal domain APP7_1346 PF01316 Arginine repressor, DNA binding domain APP7_1347 PF00056 lactate/malate dehydrogenase, NAD binding domain APP7_1347 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain APP7_1349 PF05191 Adenylate kinase, active site lid APP7_1351 PF07690 Major Facilitator Superfamily APP7_1352 PF01370 NAD dependent epimerase/dehydratase family APP7_1353 PF00533 BRCA1 C Terminus (BRCT) domain APP7_1353 PF01653 NAD-dependent DNA ligase adenylation domain APP7_1353 PF12826 Helix-hairpin-helix motif APP7_1353 PF03120 NAD-dependent DNA ligase OB-fold domain APP7_1353 PF03119 NAD-dependent DNA ligase C4 zinc finger domain APP7_1354 PF04354 ZipA, C-terminal FtsZ-binding domain APP7_1357 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain APP7_1357 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase APP7_1359 PF01177 Asp/Glu/Hydantoin racemase APP7_1360 PF07690 Major Facilitator Superfamily APP7_1361 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APP7_1362 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain APP7_1362 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain APP7_1363 PF00459 Inositol monophosphatase family APP7_1364 PF00293 NUDIX domain APP7_1365 PF01479 S4 domain APP7_1366 PF01430 Hsp33 protein APP7_1367 PF03605 Anaerobic c4-dicarboxylate membrane transporter APP7_1368 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain APP7_1368 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain APP7_1369 PF00696 Amino acid kinase family APP7_1370 PF02378 Phosphotransferase system, EIIC APP7_1370 PF00367 phosphotransferase system, EIIB APP7_1371 PF00005 ABC transporter APP7_1372 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1373 PF00381 PTS HPr component phosphorylation site APP7_1374 PF02896 PEP-utilising enzyme, TIM barrel domain APP7_1374 PF00391 PEP-utilising enzyme, mobile domain APP7_1374 PF05524 PEP-utilising enzyme, N-terminal APP7_1375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 APP7_1376 PF04055 Radical SAM superfamily APP7_1376 PF01938 TRAM domain APP7_1376 PF00919 Uncharacterized protein family UPF0004 APP7_1377 PF13361 UvrD-like helicase C-terminal domain APP7_1377 PF00580 UvrD/REP helicase N-terminal domain APP7_1378 PF02492 CobW/HypB/UreG, nucleotide-binding domain APP7_1379 PF01924 Hydrogenase formation hypA family APP7_1380 PF02769 AIR synthase related protein, C-terminal domain APP7_1380 PF00586 AIR synthase related protein, N-terminal domain APP7_1381 PF00708 Acylphosphatase APP7_1381 PF17788 HypF Kae1-like domain APP7_1381 PF01300 Telomere recombination APP7_1381 PF07503 HypF finger APP7_1382 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit APP7_1382 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal APP7_1383 PF13247 4Fe-4S dicluster domain APP7_1384 PF03916 Polysulphide reductase, NrfD APP7_1385 PF00374 Nickel-dependent hydrogenase APP7_1386 PF01750 Hydrogenase maturation protease APP7_1387 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE APP7_1388 PF01455 HupF/HypC family APP7_1389 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA APP7_1390 PF02559 CarD-like/TRCF domain APP7_1390 PF00270 DEAD/DEAH box helicase APP7_1390 PF03461 TRCF domain APP7_1390 PF17757 UvrB interaction domain APP7_1390 PF00271 Helicase conserved C-terminal domain APP7_1391 PF00271 Helicase conserved C-terminal domain APP7_1391 PF02559 CarD-like/TRCF domain APP7_1391 PF03461 TRCF domain APP7_1391 PF00270 DEAD/DEAH box helicase APP7_1391 PF17757 UvrB interaction domain APP7_1392 PF01433 Peptidase family M1 domain APP7_1392 PF11940 Domain of unknown function (DUF3458) Ig-like fold APP7_1392 PF17432 Domain of unknown function (DUF3458_C) ARM repeats APP7_1393 PF02660 Glycerol-3-phosphate acyltransferase APP7_1394 PF02152 Dihydroneopterin aldolase APP7_1395 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region APP7_1395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region APP7_1396 PF18075 FtsX extracellular domain APP7_1397 PF00005 ABC transporter APP7_1398 PF02881 SRP54-type protein, helical bundle domain APP7_1398 PF00448 SRP54-type protein, GTPase domain APP7_1400 PF04269 Protein of unknown function, DUF440 APP7_1401 PF01613 Flavin reductase like domain APP7_1402 PF03848 Tellurite resistance protein TehB APP7_1402 PF09313 Domain of unknown function (DUF1971) APP7_1403 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1404 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1405 PF00497 Bacterial extracellular solute-binding proteins, family 3 APP7_1406 PF00005 ABC transporter APP7_1407 PF01161 Phosphatidylethanolamine-binding protein APP7_1408 PF01699 Sodium/calcium exchanger protein APP7_1409 PF01381 Helix-turn-helix APP7_1410 PF02683 Cytochrome C biogenesis protein transmembrane region APP7_1410 PF13098 Thioredoxin-like domain APP7_1410 PF11412 Disulphide bond corrector protein DsbC APP7_1411 PF04315 Elongation factor P hydroxylase APP7_1412 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APP7_1413 PF04348 LppC putative lipoprotein APP7_1414 PF02021 Uncharacterised protein family UPF0102 APP7_1415 PF13580 SIS domain APP7_1416 PF04972 BON domain APP7_1417 PF01464 Transglycosylase SLT domain APP7_1417 PF00497 Bacterial extracellular solute-binding proteins, family 3 APP7_1418 PF01578 Cytochrome C assembly protein APP7_1418 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal APP7_1419 PF03100 CcmE APP7_1420 PF04995 Heme exporter protein D (CcmD) APP7_1421 PF01578 Cytochrome C assembly protein APP7_1422 PF03379 CcmB protein APP7_1423 PF00005 ABC transporter APP7_1424 PF00308 Bacterial dnaA protein APP7_1426 PF04277 Oxaloacetate decarboxylase, gamma chain APP7_1427 PF02436 Conserved carboxylase domain APP7_1427 PF00364 Biotin-requiring enzyme APP7_1427 PF00682 HMGL-like APP7_1428 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit APP7_1429 PF08274 PhnA Zinc-Ribbon APP7_1429 PF03831 PhnA domain APP7_1430 PF00034 Cytochrome c APP7_1430 PF03150 Di-haem cytochrome c peroxidase APP7_1430 PF14376 Haem-binding domain APP7_1431 PF02594 Uncharacterised ACR, YggU family COG1872 APP7_1432 PF02325 YGGT family APP7_1433 PF04320 Protein with unknown function (DUF469) APP7_1434 PF02390 Putative methyltransferase APP7_1435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III APP7_1435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal APP7_1436 PF02504 Fatty acid synthesis protein APP7_1437 PF01783 Ribosomal L32p protein family APP7_1438 PF02620 Large ribosomal RNA subunit accumulation protein YceD APP7_1439 PF01578 Cytochrome C assembly protein APP7_1440 PF03471 Transporter associated domain APP7_1440 PF01595 Cyclin M transmembrane N-terminal domain APP7_1440 PF00571 CBS domain APP7_1441 PF00209 Sodium:neurotransmitter symporter family APP7_1442 PF03830 PTS system sorbose subfamily IIB component APP7_1442 PF03610 PTS system fructose IIA component APP7_1443 PF03609 PTS system sorbose-specific iic component APP7_1444 PF03613 PTS system mannose/fructose/sorbose family IID component APP7_1445 PF06173 Protein of unknown function (DUF986) APP7_1446 PF01238 Phosphomannose isomerase type I APP7_1449 PF00005 ABC transporter APP7_1449 PF00664 ABC transporter transmembrane region APP7_1449 PF03412 Peptidase C39 family APP7_1450 PF02382 N-terminal domain in RTX protein APP7_1450 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) APP7_1450 PF08339 RTX C-terminal domain APP7_1452 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1453 PF08402 TOBE domain APP7_1453 PF00005 ABC transporter APP7_1454 PF08245 Mur ligase middle domain APP7_1454 PF02875 Mur ligase family, glutamate ligase domain APP7_1454 PF01225 Mur ligase family, catalytic domain APP7_1455 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain APP7_1457 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APP7_1457 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APP7_1458 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) APP7_1459 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I APP7_1459 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III APP7_1459 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II APP7_1459 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain APP7_1460 PF00291 Pyridoxal-phosphate dependent enzyme APP7_1460 PF00585 C-terminal regulatory domain of Threonine dehydratase APP7_1461 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APP7_1464 PF00230 Major intrinsic protein APP7_1466 PF01980 tRNA-methyltransferase O APP7_1466 PF18389 TrmO C-terminal domain APP7_1467 PF17761 DUF1016 N-terminal domain APP7_1467 PF06250 YhcG PDDEXK nuclease domain APP7_1468 PF01040 UbiA prenyltransferase family APP7_1469 PF01521 Iron-sulphur cluster biosynthesis APP7_1471 PF16363 GDP-mannose 4,6 dehydratase APP7_1472 PF00483 Nucleotidyl transferase APP7_1473 PF04321 RmlD substrate binding domain APP7_1474 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase APP7_1476 PF00535 Glycosyl transferase family 2 APP7_1477 PF00535 Glycosyl transferase family 2 APP7_1479 PF00535 Glycosyl transferase family 2 APP7_1480 PF02397 Bacterial sugar transferase APP7_1481 PF01165 Ribosomal protein S21 APP7_1482 PF08275 DNA primase catalytic core, N-terminal domain APP7_1482 PF01807 CHC2 zinc finger APP7_1482 PF10410 DnaB-helicase binding domain of primase APP7_1482 PF08278 DNA primase DnaG DnaB-binding APP7_1483 PF04546 Sigma-70, non-essential region APP7_1483 PF04545 Sigma-70, region 4 APP7_1483 PF00140 Sigma-70 factor, region 1.2 APP7_1483 PF03979 Sigma-70 factor, region 1.1 APP7_1483 PF04542 Sigma-70 region 2 APP7_1483 PF04539 Sigma-70 region 3 APP7_1484 PF01479 S4 domain APP7_1484 PF00579 tRNA synthetases class I (W and Y) APP7_1486 PF00575 S1 RNA binding domain APP7_1486 PF08461 Ribonuclease R winged-helix domain APP7_1486 PF17876 Cold shock domain APP7_1486 PF08206 Ribonuclease B OB domain APP7_1486 PF00773 RNB domain APP7_1487 PF00578 AhpC/TSA family APP7_1488 PF00440 Bacterial regulatory proteins, tetR family APP7_1489 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_1489 PF03466 LysR substrate binding domain APP7_1490 PF08534 Redoxin APP7_1490 PF00462 Glutaredoxin APP7_1492 PF01297 Zinc-uptake complex component A periplasmic APP7_1493 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase APP7_1494 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family APP7_1496 PF00575 S1 RNA binding domain APP7_1496 PF10150 Ribonuclease E/G family APP7_1496 PF12111 Polyribonucleotide phosphorylase C terminal APP7_1499 PF13333 Integrase core domain APP7_1499 PF00665 Integrase core domain APP7_1500 PF13333 Integrase core domain APP7_1500 PF00665 Integrase core domain APP7_1501 PF02525 Flavodoxin-like fold APP7_1502 PF12838 4Fe-4S dicluster domain APP7_1502 PF13187 4Fe-4S dicluster domain APP7_1504 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APP7_1504 PF01568 Molydopterin dinucleotide binding domain APP7_1504 PF00384 Molybdopterin oxidoreductase APP7_1504 PF10518 TAT (twin-arginine translocation) pathway signal sequence APP7_1505 PF12838 4Fe-4S dicluster domain APP7_1505 PF12800 4Fe-4S binding domain APP7_1506 PF12801 4Fe-4S binding domain APP7_1506 PF12837 4Fe-4S binding domain APP7_1507 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) APP7_1508 PF03264 NapC/NirT cytochrome c family, N-terminal region APP7_1509 PF14849 YidC periplasmic domain APP7_1509 PF02096 60Kd inner membrane protein APP7_1510 PF03061 Thioesterase superfamily APP7_1511 PF02913 FAD linked oxidases, C-terminal domain APP7_1511 PF01565 FAD binding domain APP7_1511 PF13183 4Fe-4S dicluster domain APP7_1512 PF00691 OmpA family APP7_1512 PF01389 OmpA-like transmembrane domain APP7_1513 PF13407 Periplasmic binding protein domain APP7_1514 PF00005 ABC transporter APP7_1515 PF02653 Branched-chain amino acid transport system / permease component APP7_1519 PF06039 Malate:quinone oxidoreductase (Mqo) APP7_1520 PF00501 AMP-binding enzyme APP7_1521 PF00248 Aldo/keto reductase family APP7_1522 PF04175 Protein of unknown function (DUF406) APP7_1523 PF03222 Tryptophan/tyrosine permease family APP7_1525 PF04262 Glutamate-cysteine ligase APP7_1525 PF18419 ATP-grasp-like domain APP7_1525 PF02655 ATP-grasp domain APP7_1526 PF01420 Type I restriction modification DNA specificity domain APP7_1527 PF02899 Phage integrase, N-terminal SAM-like domain APP7_1527 PF00589 Phage integrase family APP7_1528 PF01420 Type I restriction modification DNA specificity domain APP7_1530 PF02384 N-6 DNA Methylase APP7_1530 PF12161 HsdM N-terminal domain APP7_1531 PF08463 EcoEI R protein C-terminal APP7_1531 PF04851 Type III restriction enzyme, res subunit APP7_1531 PF00271 Helicase conserved C-terminal domain APP7_1531 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) APP7_1532 PF02666 Phosphatidylserine decarboxylase APP7_1534 PF08525 Opacity-associated protein A N-terminal motif APP7_1534 PF04225 Opacity-associated protein A LysM-like domain APP7_1536 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APP7_1537 PF01075 Glycosyltransferase family 9 (heptosyltransferase) APP7_1538 PF00164 Ribosomal protein S12/S23 APP7_1539 PF00177 Ribosomal protein S7p/S5e APP7_1540 PF00679 Elongation factor G C-terminus APP7_1540 PF03764 Elongation factor G, domain IV APP7_1540 PF03144 Elongation factor Tu domain 2 APP7_1540 PF14492 Elongation Factor G, domain II APP7_1540 PF00009 Elongation factor Tu GTP binding domain APP7_1541 PF00009 Elongation factor Tu GTP binding domain APP7_1541 PF03143 Elongation factor Tu C-terminal domain APP7_1541 PF03144 Elongation factor Tu domain 2 APP7_1545 PF08543 Phosphomethylpyrimidine kinase APP7_1546 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit APP7_1547 PF07731 Multicopper oxidase APP7_1547 PF07732 Multicopper oxidase APP7_1548 PF01553 Acyltransferase APP7_1549 PF08534 Redoxin APP7_1550 PF01926 50S ribosome-binding GTPase APP7_1550 PF12631 MnmE helical domain APP7_1550 PF10396 GTP-binding protein TrmE N-terminus APP7_1551 PF05167 Uncharacterised ACR (DUF711) APP7_1553 PF02678 Pirin APP7_1553 PF17954 Quercetinase C-terminal cupin domain APP7_1554 PF00210 Ferritin-like domain APP7_1557 PF12805 FUSC-like inner membrane protein yccS APP7_1558 PF02142 MGS-like domain APP7_1559 PF14821 Threonine synthase N terminus APP7_1559 PF00291 Pyridoxal-phosphate dependent enzyme APP7_1561 PF13333 Integrase core domain APP7_1561 PF00665 Integrase core domain APP7_1562 PF08264 Anticodon-binding domain of tRNA APP7_1562 PF00133 tRNA synthetases class I (I, L, M and V) APP7_1562 PF10458 Valyl tRNA synthetase tRNA binding arm APP7_1564 PF13673 Acetyltransferase (GNAT) domain APP7_1565 PF04364 DNA polymerase III chi subunit, HolC APP7_1566 PF01476 LysM domain APP7_1567 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APP7_1567 PF05697 Bacterial trigger factor protein (TF) APP7_1567 PF05698 Bacterial trigger factor protein (TF) C-terminus APP7_1568 PF00581 Rhodanese-like domain APP7_1569 PF02556 Preprotein translocase subunit SecB APP7_1570 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus APP7_1570 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus APP7_1571 PF00132 Bacterial transferase hexapeptide (six repeats) APP7_1571 PF06426 Serine acetyltransferase, N-terminal APP7_1572 PF00009 Elongation factor Tu GTP binding domain APP7_1572 PF03143 Elongation factor Tu C-terminal domain APP7_1572 PF03144 Elongation factor Tu domain 2 APP7_1573 PF00485 Phosphoribulokinase / Uridine kinase family APP7_1574 PF08534 Redoxin APP7_1575 PF03918 Cytochrome C biogenesis protein APP7_1576 PF03918 Cytochrome C biogenesis protein APP7_1577 PF00994 Probable molybdopterin binding domain APP7_1578 PF00543 Nitrogen regulatory protein P-II APP7_1579 PF01252 Signal peptidase (SPase) II APP7_1580 PF02401 LytB protein APP7_1581 PF03937 Flavinator of succinate dehydrogenase APP7_1583 PF04055 Radical SAM superfamily APP7_1584 PF02798 Glutathione S-transferase, N-terminal domain APP7_1584 PF00043 Glutathione S-transferase, C-terminal domain APP7_1585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain APP7_1585 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain APP7_1587 PF02313 Fumarate reductase subunit D APP7_1588 PF02300 Fumarate reductase subunit C APP7_1589 PF13085 2Fe-2S iron-sulfur cluster binding domain APP7_1589 PF13183 4Fe-4S dicluster domain APP7_1590 PF02910 Fumarate reductase flavoprotein C-term APP7_1590 PF00890 FAD binding domain APP7_1591 PF00152 tRNA synthetases class II (D, K and N) APP7_1592 PF01678 Diaminopimelate epimerase APP7_1593 PF03605 Anaerobic c4-dicarboxylate membrane transporter APP7_1594 PF02537 CrcB-like protein, Camphor Resistance (CrcB) APP7_1596 PF03702 Anhydro-N-acetylmuramic acid kinase APP7_1597 PF01380 SIS domain APP7_1601 PF01523 Putative modulator of DNA gyrase APP7_1602 PF09179 TilS substrate binding domain APP7_1602 PF01171 PP-loop family APP7_1602 PF11734 TilS substrate C-terminal domain APP7_1604 PF02899 Phage integrase, N-terminal SAM-like domain APP7_1604 PF00589 Phage integrase family APP7_1605 PF03808 Glycosyl transferase WecB/TagA/CpsF family APP7_1606 PF06899 WzyE protein, O-antigen assembly polymerase APP7_1607 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 APP7_1608 PF03063 Prismane/CO dehydrogenase family APP7_1609 PF00970 Oxidoreductase FAD-binding domain APP7_1609 PF00175 Oxidoreductase NAD-binding domain APP7_1609 PF00111 2Fe-2S iron-sulfur cluster binding domain APP7_1610 PF01943 Polysaccharide biosynthesis protein APP7_1611 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family APP7_1613 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain APP7_1613 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain APP7_1613 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain APP7_1614 PF02350 UDP-N-acetylglucosamine 2-epimerase APP7_1616 PF00953 Glycosyl transferase family 4 APP7_1617 PF00202 Aminotransferase class-III APP7_1619 PF03023 Lipid II flippase MurJ APP7_1620 PF01649 Ribosomal protein S20 APP7_1621 PF02080 TrkA-C domain APP7_1621 PF02254 TrkA-N domain APP7_1622 PF01189 16S rRNA methyltransferase RsmB/F APP7_1622 PF01029 NusB family APP7_1623 PF09107 Elongation factor SelB, winged helix APP7_1623 PF09106 Elongation factor SelB, winged helix APP7_1623 PF03144 Elongation factor Tu domain 2 APP7_1623 PF00009 Elongation factor Tu GTP binding domain APP7_1624 PF12390 Selenocysteine synthase N terminal APP7_1624 PF03841 L-seryl-tRNA selenium transferase APP7_1625 PF00258 Flavodoxin APP7_1626 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP7_1626 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP7_1629 PF07715 TonB-dependent Receptor Plug Domain APP7_1629 PF00593 TonB dependent receptor APP7_1631 PF02472 Biopolymer transport protein ExbD/TolR APP7_1632 PF01618 MotA/TolQ/ExbB proton channel family APP7_1634 PF03956 Lysine exporter LysO APP7_1635 PF02615 Malate/L-lactate dehydrogenase APP7_1637 PF17311 Family of unknown function (DUF5358) APP7_1639 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase APP7_1641 PF01467 Cytidylyltransferase-like APP7_1643 PF00665 Integrase core domain APP7_1643 PF13936 Helix-turn-helix domain APP7_1644 PF02563 Polysaccharide biosynthesis/export protein APP7_1646 PF01061 ABC-2 type transporter APP7_1647 PF00005 ABC transporter APP7_1648 PF00005 ABC transporter APP7_1649 PF02911 Formyl transferase, C-terminal domain APP7_1649 PF00551 Formyl transferase APP7_1651 PF01205 Uncharacterized protein family UPF0029 APP7_1651 PF09186 Domain of unknown function (DUF1949) APP7_1652 PF02386 Cation transport protein APP7_1653 PF12724 Flavodoxin domain APP7_1654 PF01741 Large-conductance mechanosensitive channel, MscL APP7_1655 PF04055 Radical SAM superfamily APP7_1656 PF03099 Biotin/lipoate A/B protein ligase family APP7_1657 PF04359 Protein of unknown function (DUF493) APP7_1658 PF00768 D-alanyl-D-alanine carboxypeptidase APP7_1658 PF07943 Penicillin-binding protein 5, C-terminal domain APP7_1659 PF03330 Lytic transglycolase APP7_1660 PF01098 Cell cycle protein APP7_1661 PF03717 Penicillin-binding Protein dimerisation domain APP7_1661 PF00905 Penicillin binding protein transpeptidase domain APP7_1662 PF02590 Predicted SPOUT methyltransferase APP7_1664 PF00488 MutS domain V APP7_1664 PF05192 MutS domain III APP7_1664 PF05188 MutS domain II APP7_1664 PF01624 MutS domain I APP7_1664 PF05190 MutS family domain IV APP7_1665 PF00005 ABC transporter APP7_1666 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1667 PF03313 Serine dehydratase alpha chain APP7_1668 PF01814 Hemerythrin HHE cation binding domain APP7_1668 PF04405 Domain of Unknown function (DUF542) APP7_1669 PF00893 Small Multidrug Resistance protein APP7_1670 PF04175 Protein of unknown function (DUF406) APP7_1673 PF01774 UreD urease accessory protein APP7_1674 PF02492 CobW/HypB/UreG, nucleotide-binding domain APP7_1675 PF01730 UreF APP7_1676 PF05194 UreE urease accessory protein, C-terminal domain APP7_1676 PF02814 UreE urease accessory protein, N-terminal domain APP7_1678 PF01979 Amidohydrolase family APP7_1678 PF00449 Urease alpha-subunit, N-terminal domain APP7_1679 PF00699 Urease beta subunit APP7_1680 PF00547 Urease, gamma subunit APP7_1682 PF00005 ABC transporter APP7_1684 PF01891 Cobalt uptake substrate-specific transmembrane region APP7_1686 PF10670 Domain of unknown function (DUF4198) APP7_1687 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_1687 PF03466 LysR substrate binding domain APP7_1689 PF02080 TrkA-C domain APP7_1689 PF03600 Citrate transporter APP7_1690 PF05068 Mannitol repressor APP7_1691 PF08125 Mannitol dehydrogenase C-terminal domain APP7_1691 PF01232 Mannitol dehydrogenase Rossmann domain APP7_1692 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP7_1692 PF02378 Phosphotransferase system, EIIC APP7_1692 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit APP7_1693 PF01380 SIS domain APP7_1694 PF08220 DeoR-like helix-turn-helix domain APP7_1694 PF00455 DeoR C terminal sensor domain APP7_1697 PF18254 HMW1 domain 2 APP7_1697 PF18071 HMW1C N-terminal APP7_1698 PF04055 Radical SAM superfamily APP7_1698 PF18693 TRAM domain APP7_1698 PF00919 Uncharacterized protein family UPF0004 APP7_1699 PF01048 Phosphorylase superfamily APP7_1701 PF04102 SlyX APP7_1702 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APP7_1702 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APP7_1703 PF08348 YheO-like PAS domain APP7_1703 PF13309 HTH domain APP7_1704 PF02635 DsrE/DsrF-like family APP7_1705 PF02635 DsrE/DsrF-like family APP7_1706 PF04077 DsrH like protein APP7_1707 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain APP7_1708 PF02874 ATP synthase alpha/beta family, beta-barrel domain APP7_1708 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APP7_1709 PF00231 ATP synthase APP7_1710 PF02874 ATP synthase alpha/beta family, beta-barrel domain APP7_1710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain APP7_1710 PF00306 ATP synthase alpha/beta chain, C terminal domain APP7_1711 PF00213 ATP synthase delta (OSCP) subunit APP7_1712 PF00430 ATP synthase B/B' CF(0) APP7_1713 PF00137 ATP synthase subunit C APP7_1714 PF00119 ATP synthase A chain APP7_1716 PF02527 rRNA small subunit methyltransferase G APP7_1717 PF01134 Glucose inhibited division protein A APP7_1717 PF13932 GidA associated domain APP7_1719 PF00497 Bacterial extracellular solute-binding proteins, family 3 APP7_1720 PF02810 SEC-C motif APP7_1722 PF03613 PTS system mannose/fructose/sorbose family IID component APP7_1723 PF03609 PTS system sorbose-specific iic component APP7_1724 PF03830 PTS system sorbose subfamily IIB component APP7_1724 PF03610 PTS system fructose IIA component APP7_1725 PF02447 GntP family permease APP7_1726 PF01202 Shikimate kinase APP7_1727 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family APP7_1727 PF00356 Bacterial regulatory proteins, lacI family APP7_1728 PF00356 Bacterial regulatory proteins, lacI family APP7_1729 PF05025 RbsD / FucU transport protein family APP7_1730 PF00005 ABC transporter APP7_1731 PF02653 Branched-chain amino acid transport system / permease component APP7_1732 PF13407 Periplasmic binding protein domain APP7_1733 PF00294 pfkB family carbohydrate kinase APP7_1734 PF01568 Molydopterin dinucleotide binding domain APP7_1734 PF00384 Molybdopterin oxidoreductase APP7_1734 PF04879 Molybdopterin oxidoreductase Fe4S4 domain APP7_1735 PF13247 4Fe-4S dicluster domain APP7_1735 PF12800 4Fe-4S binding domain APP7_1736 PF04976 DMSO reductase anchor subunit (DmsC) APP7_1737 PF02613 Nitrate reductase delta subunit APP7_1738 PF00037 4Fe-4S binding domain APP7_1738 PF12838 4Fe-4S dicluster domain APP7_1743 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain APP7_1743 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal APP7_1743 PF02769 AIR synthase related protein, C-terminal domain APP7_1744 PF00455 DeoR C terminal sensor domain APP7_1744 PF08220 DeoR-like helix-turn-helix domain APP7_1745 PF07881 L-fucose isomerase, first N-terminal domain APP7_1745 PF07882 L-fucose isomerase, second N-terminal domain APP7_1745 PF02952 L-fucose isomerase, C-terminal domain APP7_1746 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP7_1746 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP7_1747 PF05025 RbsD / FucU transport protein family APP7_1748 PF00596 Class II Aldolase and Adducin N-terminal domain APP7_1749 PF07690 Major Facilitator Superfamily APP7_1750 PF00465 Iron-containing alcohol dehydrogenase APP7_1751 PF07274 Protein of unknown function (DUF1440) APP7_1753 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1754 PF00005 ABC transporter APP7_1755 PF00497 Bacterial extracellular solute-binding proteins, family 3 APP7_1756 PF05159 Capsule polysaccharide biosynthesis protein APP7_1757 PF05159 Capsule polysaccharide biosynthesis protein APP7_1759 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family APP7_1760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 APP7_1761 PF03611 PTS system sugar-specific permease component APP7_1763 PF08220 DeoR-like helix-turn-helix domain APP7_1763 PF00455 DeoR C terminal sensor domain APP7_1764 PF01261 Xylose isomerase-like TIM barrel APP7_1765 PF00596 Class II Aldolase and Adducin N-terminal domain APP7_1766 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase APP7_1766 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase APP7_1770 PF01370 NAD dependent epimerase/dehydratase family APP7_1771 PF01327 Polypeptide deformylase APP7_1772 PF17782 DprA winged helix domain APP7_1772 PF02481 DNA recombination-mediator protein A APP7_1773 PF03169 OPT oligopeptide transporter protein APP7_1774 PF03611 PTS system sugar-specific permease component APP7_1776 PF00584 SecE/Sec61-gamma subunits of protein translocation complex APP7_1777 PF00467 KOW motif APP7_1777 PF02357 Transcription termination factor nusG APP7_1778 PF03946 Ribosomal protein L11, N-terminal domain APP7_1778 PF00298 Ribosomal protein L11, RNA binding domain APP7_1779 PF00687 Ribosomal protein L1p/L10e family APP7_1780 PF00466 Ribosomal protein L10 APP7_1781 PF16320 Ribosomal protein L7/L12 dimerisation domain APP7_1781 PF00542 Ribosomal protein L7/L12 C-terminal domain APP7_1788 PF04561 RNA polymerase Rpb2, domain 2 APP7_1788 PF04563 RNA polymerase beta subunit APP7_1788 PF04560 RNA polymerase Rpb2, domain 7 APP7_1788 PF00562 RNA polymerase Rpb2, domain 6 APP7_1788 PF04565 RNA polymerase Rpb2, domain 3 APP7_1788 PF10385 RNA polymerase beta subunit external 1 domain APP7_1789 PF04998 RNA polymerase Rpb1, domain 5 APP7_1789 PF05000 RNA polymerase Rpb1, domain 4 APP7_1789 PF04983 RNA polymerase Rpb1, domain 3 APP7_1789 PF00623 RNA polymerase Rpb1, domain 2 APP7_1789 PF04997 RNA polymerase Rpb1, domain 1 APP7_1791 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin APP7_1792 PF01850 PIN domain APP7_1796 PF07724 AAA domain (Cdc48 subfamily) APP7_1796 PF10431 C-terminal, D2-small domain, of ClpB protein APP7_1796 PF00004 ATPase family associated with various cellular activities (AAA) APP7_1797 PF00227 Proteasome subunit APP7_1798 PF17746 SfsA N-terminal OB domain APP7_1798 PF03749 Sugar fermentation stimulation protein RE domain APP7_1799 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily APP7_1800 PF14815 NUDIX domain APP7_1800 PF00730 HhH-GPD superfamily base excision DNA repair protein APP7_1801 PF04362 Bacterial Fe(2+) trafficking APP7_1802 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain APP7_1802 PF01464 Transglycosylase SLT domain APP7_1804 PF00589 Phage integrase family APP7_1804 PF02899 Phage integrase, N-terminal SAM-like domain APP7_1808 PF03412 Peptidase C39 family APP7_1808 PF00005 ABC transporter APP7_1808 PF00664 ABC transporter transmembrane region APP7_1809 PF00529 HlyD membrane-fusion protein of T1SS APP7_1809 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APP7_1810 PF02881 SRP54-type protein, helical bundle domain APP7_1810 PF02978 Signal peptide binding domain APP7_1810 PF00448 SRP54-type protein, GTPase domain APP7_1813 PF00149 Calcineurin-like phosphoesterase APP7_1813 PF02872 5'-nucleotidase, C-terminal domain APP7_1814 PF01494 FAD binding domain APP7_1815 PF01381 Helix-turn-helix APP7_1816 PF01078 Magnesium chelatase, subunit ChlI APP7_1816 PF13335 Magnesium chelatase, subunit ChlI C-terminal APP7_1818 PF00580 UvrD/REP helicase N-terminal domain APP7_1818 PF12462 DNA helicase IV / RNA helicase N terminal APP7_1818 PF13361 UvrD-like helicase C-terminal domain APP7_1820 PF12833 Helix-turn-helix domain APP7_1821 PF00440 Bacterial regulatory proteins, tetR family APP7_1822 PF07690 Major Facilitator Superfamily APP7_1823 PF02909 Tetracyclin repressor-like, C-terminal domain APP7_1823 PF00440 Bacterial regulatory proteins, tetR family APP7_1825 PF07669 Eco57I restriction-modification methylase APP7_1825 PF12950 TaqI-like C-terminal specificity domain APP7_1830 PF00665 Integrase core domain APP7_1832 PF01078 Magnesium chelatase, subunit ChlI APP7_1832 PF13335 Magnesium chelatase, subunit ChlI C-terminal APP7_1834 PF00561 alpha/beta hydrolase fold APP7_1835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain APP7_1835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain APP7_1835 PF16582 Middle domain of thiamine pyrophosphate APP7_1836 PF13472 GDSL-like Lipase/Acylhydrolase family APP7_1836 PF02348 Cytidylyltransferase APP7_1837 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase APP7_1838 PF00480 ROK family APP7_1839 PF00701 Dihydrodipicolinate synthetase family APP7_1840 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase APP7_1841 PF01979 Amidohydrolase family APP7_1842 PF10415 Fumarase C C-terminus APP7_1842 PF00206 Lyase APP7_1844 PF00338 Ribosomal protein S10p/S20e APP7_1845 PF00297 Ribosomal protein L3 APP7_1846 PF00573 Ribosomal protein L4/L1 family APP7_1847 PF00276 Ribosomal protein L23 APP7_1848 PF00181 Ribosomal Proteins L2, RNA binding domain APP7_1848 PF03947 Ribosomal Proteins L2, C-terminal domain APP7_1849 PF00203 Ribosomal protein S19 APP7_1850 PF00237 Ribosomal protein L22p/L17e APP7_1851 PF07650 KH domain APP7_1851 PF00189 Ribosomal protein S3, C-terminal domain APP7_1852 PF00252 Ribosomal protein L16p/L10e APP7_1853 PF00831 Ribosomal L29 protein APP7_1854 PF00366 Ribosomal protein S17 APP7_1855 PF00238 Ribosomal protein L14p/L23e APP7_1856 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 APP7_1856 PF00467 KOW motif APP7_1857 PF00281 Ribosomal protein L5 APP7_1857 PF00673 ribosomal L5P family C-terminus APP7_1858 PF00253 Ribosomal protein S14p/S29e APP7_1859 PF00410 Ribosomal protein S8 APP7_1860 PF00347 Ribosomal protein L6 APP7_1861 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast APP7_1862 PF03719 Ribosomal protein S5, C-terminal domain APP7_1862 PF00333 Ribosomal protein S5, N-terminal domain APP7_1863 PF00327 Ribosomal protein L30p/L7e APP7_1864 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A APP7_1865 PF00344 SecY translocase APP7_1866 PF00444 Ribosomal protein L36 APP7_1867 PF00416 Ribosomal protein S13/S18 APP7_1868 PF00411 Ribosomal protein S11 APP7_1869 PF00163 Ribosomal protein S4/S9 N-terminal domain APP7_1869 PF01479 S4 domain APP7_1870 PF01000 RNA polymerase Rpb3/RpoA insert domain APP7_1870 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain APP7_1870 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain APP7_1871 PF01196 Ribosomal protein L17 APP7_1872 PF00886 Ribosomal protein S16 APP7_1873 PF05239 PRC-barrel domain APP7_1873 PF01782 RimM N-terminal domain APP7_1874 PF01746 tRNA (Guanine-1)-methyltransferase APP7_1875 PF01245 Ribosomal protein L19 APP7_1876 PF08007 Cupin superfamily protein APP7_1878 PF01032 FecCD transport family APP7_1879 PF00005 ABC transporter APP7_1880 PF00127 Copper binding proteins, plastocyanin/azurin family APP7_1883 PF02613 Nitrate reductase delta subunit APP7_1884 PF01568 Molydopterin dinucleotide binding domain APP7_1884 PF18364 Molybdopterin oxidoreductase N-terminal domain APP7_1884 PF00384 Molybdopterin oxidoreductase APP7_1886 PF02091 Glycyl-tRNA synthetase alpha subunit APP7_1887 PF04480 Protein of unknown function (DUF559) APP7_1889 PF05746 DALR anticodon binding domain APP7_1889 PF02092 Glycyl-tRNA synthetase beta subunit APP7_1891 PF17347 Family of unknown function (DUF5377) APP7_1892 PF02899 Phage integrase, N-terminal SAM-like domain APP7_1892 PF00589 Phage integrase family APP7_1893 PF04304 Protein of unknown function (DUF454) APP7_1894 PF00535 Glycosyl transferase family 2 APP7_1895 PF00149 Calcineurin-like phosphoesterase APP7_1896 PF07509 Protein of unknown function (DUF1523) APP7_1897 PF01026 TatD related DNase APP7_1899 PF00005 ABC transporter APP7_1899 PF02687 FtsX-like permease family APP7_1899 PF12704 MacB-like periplasmic core domain APP7_1900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion APP7_1901 PF06629 MltA-interacting protein MipA APP7_1902 PF09115 DNA polymerase III, delta subunit, C terminal APP7_1903 PF02223 Thymidylate kinase APP7_1904 PF02618 YceG-like family APP7_1905 PF00550 Phosphopantetheine attachment site APP7_1906 PF00834 Ribulose-phosphate 3 epimerase family APP7_1907 PF01197 Ribosomal protein L31 APP7_1908 PF00444 Ribosomal protein L36 APP7_1909 PF14814 Bifunctional transglycosylase second domain APP7_1909 PF00905 Penicillin binding protein transpeptidase domain APP7_1909 PF00912 Transglycosylase APP7_1910 PF00378 Enoyl-CoA hydratase/isomerase APP7_1911 PF02824 TGS domain APP7_1911 PF13291 ACT domain APP7_1911 PF04607 Region found in RelA / SpoT proteins APP7_1912 PF01192 RNA polymerase Rpb6 APP7_1913 PF17191 RecG wedge domain APP7_1913 PF00271 Helicase conserved C-terminal domain APP7_1913 PF00270 DEAD/DEAH box helicase APP7_1916 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) APP7_1916 PF04073 Aminoacyl-tRNA editing domain APP7_1916 PF03129 Anticodon binding domain APP7_1918 PF04542 Sigma-70 region 2 APP7_1918 PF08281 Sigma-70, region 4 APP7_1919 PF00174 Oxidoreductase molybdopterin binding domain APP7_1920 PF01794 Ferric reductase like transmembrane component APP7_1921 PF04542 Sigma-70 region 2 APP7_1921 PF04545 Sigma-70, region 4 APP7_1921 PF00140 Sigma-70 factor, region 1.2 APP7_1922 PF07690 Major Facilitator Superfamily APP7_1924 PF03590 Aspartate-ammonia ligase APP7_1925 PF13404 AsnC-type helix-turn-helix domain APP7_1925 PF01037 Lrp/AsnC ligand binding domain APP7_1926 PF01048 Phosphorylase superfamily APP7_1927 PF04345 Chorismate lyase APP7_1928 PF01177 Asp/Glu/Hydantoin racemase APP7_1929 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain APP7_1929 PF01077 Nitrite and sulphite reductase 4Fe-4S domain APP7_1930 PF00258 Flavodoxin APP7_1930 PF00175 Oxidoreductase NAD-binding domain APP7_1930 PF00667 FAD binding domain APP7_1931 PF00009 Elongation factor Tu GTP binding domain APP7_1932 PF01507 Phosphoadenosine phosphosulfate reductase family APP7_1933 PF01507 Phosphoadenosine phosphosulfate reductase family APP7_1934 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases APP7_1934 PF14824 Sirohaem biosynthesis protein central APP7_1934 PF10414 Sirohaem synthase dimerisation region APP7_1936 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1937 PF00528 Binding-protein-dependent transport system inner membrane component APP7_1938 PF00005 ABC transporter APP7_1938 PF17850 CysA C-terminal regulatory domain APP7_1938 PF12857 TOBE-like domain APP7_1939 PF01070 FMN-dependent dehydrogenase APP7_1940 PF08279 HTH domain APP7_1940 PF03099 Biotin/lipoate A/B protein ligase family APP7_1940 PF02237 Biotin protein ligase C terminal domain APP7_1941 PF01565 FAD binding domain APP7_1941 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain APP7_1942 PF01389 OmpA-like transmembrane domain APP7_1942 PF00691 OmpA family APP7_1943 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APP7_1943 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APP7_1944 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain APP7_1944 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain APP7_1945 PF04403 Paraquat-inducible protein A APP7_1946 PF01841 Transglutaminase-like superfamily APP7_1948 PF00403 Heavy-metal-associated domain APP7_1949 PF00465 Iron-containing alcohol dehydrogenase APP7_1950 PF03466 LysR substrate binding domain APP7_1950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family APP7_1951 PF00132 Bacterial transferase hexapeptide (six repeats) APP7_1951 PF14602 Hexapeptide repeat of succinyl-transferase APP7_1951 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal APP7_1952 PF01220 Dehydroquinase class II APP7_1953 PF04488 Glycosyltransferase sugar-binding region containing DXD motif APP7_1954 PF00364 Biotin-requiring enzyme APP7_1955 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP7_1955 PF02785 Biotin carboxylase C-terminal domain APP7_1955 PF00289 Biotin carboxylase, N-terminal domain APP7_1956 PF12804 MobA-like NTP transferase domain APP7_1957 PF01323 DSBA-like thioredoxin domain APP7_1958 PF05036 Sporulation related domain APP7_1958 PF05036 Sporulation related domain APP7_1959 PF04445 Putative SAM-dependent methyltransferase APP7_1960 PF02557 D-alanyl-D-alanine carboxypeptidase APP7_1961 PF07687 Peptidase dimerisation domain APP7_1961 PF01546 Peptidase family M20/M25/M40 APP7_1962 PF03960 ArsC family APP7_1964 PF00809 Pterin binding enzyme APP7_1965 PF00849 RNA pseudouridylate synthase APP7_1965 PF01479 S4 domain APP7_1967 PF00924 Mechanosensitive ion channel APP7_1967 PF05552 Conserved TM helix APP7_1968 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain APP7_1968 PF00289 Biotin carboxylase, N-terminal domain APP7_1968 PF02785 Biotin carboxylase C-terminal domain APP7_1970 PF05193 Peptidase M16 inactive domain APP7_1970 PF16187 Middle or third domain of peptidase_M16 APP7_1970 PF00675 Insulinase (Peptidase family M16) APP7_1971 PF17946 RecC C-terminal domain APP7_1976 PF07977 FabA-like domain APP7_1977 PF13654 AAA domain APP7_1977 PF05362 Lon protease (S16) C-terminal proteolytic domain APP7_1978 PF06303 MatP N-terminal domain APP7_1978 PF17414 MatP C-terminal ribbon-helix-helix domain APP7_1979 PF00579 tRNA synthetases class I (W and Y) APP7_1980 PF13419 Haloacid dehalogenase-like hydrolase APP7_1982 PF01790 Prolipoprotein diacylglyceryl transferase APP7_1983 PF01925 Sulfite exporter TauE/SafE APP7_1984 PF00293 NUDIX domain APP7_1986 PF00719 Inorganic pyrophosphatase APP7_1987 PF05175 Methyltransferase small domain APP7_1988 PF03737 Aldolase/RraA APP7_1989 PF01226 Formate/nitrite transporter APP7_1991 PF13333 Integrase core domain APP7_1991 PF00665 Integrase core domain APP7_1994 PF00226 DnaJ domain APP7_1994 PF00684 DnaJ central domain APP7_1994 PF01556 DnaJ C terminal domain APP7_1995 PF00012 Hsp70 protein APP7_1996 PF02782 FGGY family of carbohydrate kinases, C-terminal domain APP7_1996 PF00370 FGGY family of carbohydrate kinases, N-terminal domain APP7_1998 PF13407 Periplasmic binding protein domain APP7_1999 PF00005 ABC transporter APP7_2000 PF02653 Branched-chain amino acid transport system / permease component APP7_2001 PF12833 Helix-turn-helix domain APP7_2002 PF01431 Peptidase family M13 APP7_2002 PF05649 Peptidase family M13 APP7_2003 PF10571 Uncharacterised protein family UPF0547 APP7_2004 PF00474 Sodium:solute symporter family APP7_2005 PF06196 Protein of unknown function (DUF997) APP7_2006 PF01340 Met Apo-repressor, MetJ APP7_2007 PF04333 MlaA lipoprotein APP7_2008 PF01263 Aldose 1-epimerase APP7_2011 PF01522 Polysaccharide deacetylase APP7_2011 PF14883 Hypothetical glycosyl hydrolase family 13 APP7_2012 PF00535 Glycosyl transferase family 2 APP7_2014 PF00121 Triosephosphate isomerase APP7_2015 PF01142 tRNA pseudouridine synthase D (TruD) APP7_2016 PF01975 Survival protein SurE APP7_2017 PF09335 SNARE associated Golgi protein APP7_2020 PF01551 Peptidase family M23 APP7_2020 PF01476 LysM domain APP7_2021 PF03352 Methyladenine glycosylase APP7_2023 PF07670 Nucleoside recognition APP7_2024 PF07670 Nucleoside recognition APP7_2025 PF00762 Ferrochelatase APP7_2026 PF00468 Ribosomal protein L34 APP7_2027 PF00825 Ribonuclease P APP7_2028 PF01809 Putative membrane protein insertion efficiency factor APP7_2029 PF03951 Glutamine synthetase, beta-Grasp domain APP7_2029 PF00120 Glutamine synthetase, catalytic domain APP7_2030 PF00149 Calcineurin-like phosphoesterase APP7_2031 PF00293 NUDIX domain APP7_2032 PF06146 Phosphate-starvation-inducible E APP7_2033 PF01648 4'-phosphopantetheinyl transferase superfamily APP7_2034 PF00892 EamA-like transporter family APP7_2035 PF06965 Na+/H+ antiporter 1 APP7_2037 PF02580 D-Tyr-tRNA(Tyr) deacylase APP7_2038 PF03631 Virulence factor BrkB APP7_2039 PF00171 Aldehyde dehydrogenase family APP7_2041 PF07715 TonB-dependent Receptor Plug Domain APP7_2041 PF00593 TonB dependent receptor APP7_2043 PF07715 TonB-dependent Receptor Plug Domain APP7_2043 PF04886 PT repeat APP7_2043 PF00593 TonB dependent receptor APP7_2046 PF08676 MutL C terminal dimerisation domain APP7_2046 PF01119 DNA mismatch repair protein, C-terminal domain APP7_2047 PF08240 Alcohol dehydrogenase GroES-like domain APP7_2047 PF00107 Zinc-binding dehydrogenase APP7_2049 PF17209 Hfq protein APP7_2050 PF13167 GTP-binding GTPase N-terminal APP7_2050 PF16360 GTP-binding GTPase Middle Region APP7_2050 PF01926 50S ribosome-binding GTPase APP7_2051 PF03641 Possible lysine decarboxylase APP7_2052 PF03819 MazG nucleotide pyrophosphohydrolase domain APP7_2053 PF13545 Crp-like helix-turn-helix domain APP7_2053 PF00027 Cyclic nucleotide-binding domain APP7_2054 PF06794 Uncharacterised protein family (UPF0270) APP7_2055 PF00440 Bacterial regulatory proteins, tetR family APP7_2056 PF00692 dUTPase APP7_2057 PF02441 Flavoprotein APP7_2057 PF04127 DNA / pantothenate metabolism flavoprotein APP7_2058 PF04002 RadC-like JAB domain APP7_2059 PF00830 Ribosomal L28 family APP7_2060 PF00471 Ribosomal protein L33 APP7_2062 PF00202 Aminotransferase class-III APP7_2063 PF00282 Pyridoxal-dependent decarboxylase conserved domain APP7_2064 PF01206 Sulfurtransferase TusA APP7_2065 PF04143 Sulphur transport APP7_2066 PF04219 Protein of unknown function, DUF APP7_2067 PF05958 tRNA (Uracil-5-)-methyltransferase APP7_2068 PF01544 CorA-like Mg2+ transporter protein APP7_2069 PF01209 ubiE/COQ5 methyltransferase family APP7_2071 PF03109 ABC1 family APP7_2072 PF02416 mttA/Hcf106 family APP7_2074 PF00902 Sec-independent protein translocase protein (TatC) APP7_2075 PF00490 Delta-aminolevulinic acid dehydratase APP7_2077 PF06827 Zinc finger found in FPG and IleRS APP7_2077 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain APP7_2077 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain APP7_2078 PF05525 Branched-chain amino acid transport protein APP7_2080 PF00698 Acyl transferase domain APP7_2081 PF02677 Epoxyqueuosine reductase QueH APP7_2082 PF00348 Polyprenyl synthetase APP7_2084 PF03358 NADPH-dependent FMN reductase APP7_2085 PF07681 DoxX APP7_2086 PF00829 Ribosomal prokaryotic L21 protein APP7_2087 PF01016 Ribosomal L27 protein APP7_2088 PF00892 EamA-like transporter family APP7_2090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD APP7_2091 PF00156 Phosphoribosyl transferase domain APP7_2092 PF05175 Methyltransferase small domain APP7_2092 PF08468 Methyltransferase small domain N-terminal APP7_2094 PF00583 Acetyltransferase (GNAT) family APP7_2095 PF00271 Helicase conserved C-terminal domain APP7_2095 PF00270 DEAD/DEAH box helicase APP7_2096 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region APP7_2096 PF01243 Pyridoxamine 5'-phosphate oxidase APP7_2097 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle APP7_2098 PF00171 Aldehyde dehydrogenase family APP7_2099 PF01184 GPR1/FUN34/yaaH family APP7_2100 PF00005 ABC transporter APP7_2101 PF01497 Periplasmic binding protein APP7_2102 PF01032 FecCD transport family APP7_2103 PF07715 TonB-dependent Receptor Plug Domain APP7_2103 PF00593 TonB dependent receptor APP7_2105 PF01259 SAICAR synthetase APP7_2106 PF01634 ATP phosphoribosyltransferase APP7_2106 PF08029 HisG, C-terminal domain APP7_2107 PF00815 Histidinol dehydrogenase APP7_2108 PF00155 Aminotransferase class I and II APP7_2110 PF00475 Imidazoleglycerol-phosphate dehydratase APP7_2112 PF00117 Glutamine amidotransferase class-I APP7_2113 PF00977 Histidine biosynthesis protein APP7_2114 PF00977 Histidine biosynthesis protein APP7_2115 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase APP7_2115 PF01502 Phosphoribosyl-AMP cyclohydrolase APP7_2116 PF02592 Putative vitamin uptake transporter APP7_2117 PF00557 Metallopeptidase family M24 APP7_2119 PF13407 Periplasmic binding protein domain APP7_2119 PF00356 Bacterial regulatory proteins, lacI family APP7_2120 PF08244 Glycosyl hydrolases family 32 C terminal APP7_2120 PF00251 Glycosyl hydrolases family 32 N-terminal domain APP7_2121 PF00294 pfkB family carbohydrate kinase APP7_2122 PF07732 Multicopper oxidase APP7_2123 PF02687 FtsX-like permease family APP7_2123 PF12704 MacB-like periplasmic core domain APP7_2124 PF00005 ABC transporter APP7_2125 PF02687 FtsX-like permease family APP7_2125 PF12704 MacB-like periplasmic core domain APP7_2126 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain APP7_2126 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain APP7_2127 PF00793 DAHP synthetase I family APP7_2128 PF13369 Transglutaminase-like superfamily APP7_2129 PF13847 Methyltransferase domain APP7_2129 PF17827 PrmC N-terminal domain APP7_2131 PF03462 PCRF domain APP7_2131 PF00472 RF-1 domain APP7_A0002 PF13936 Helix-turn-helix domain APP7_A0002 PF00665 Integrase core domain APP7_A0005 PF04837 MbeB-like, N-term conserved region APP7_B0002 PF03432 Relaxase/Mobilisation nuclease domain APP7_B0003 PF00809 Pterin binding enzyme APP7_B0004 PF01636 Phosphotransferase enzyme family APP7_C0001 PF03432 Relaxase/Mobilisation nuclease domain