locus-tag class description DDU33_00005 PF00580 UvrD/REP helicase N-terminal domain DDU33_00005 PF13361 UvrD-like helicase C-terminal domain DDU33_00010 PF01396 Topoisomerase DNA binding C4 zinc finger DDU33_00015 PF01300 Telomere recombination DDU33_00020 PF01520 N-acetylmuramoyl-L-alanine amidase DDU33_00020 PF01476 LysM domain DDU33_00025 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DDU33_00030 PF00929 Exonuclease DDU33_00035 PF01467 Cytidylyltransferase-like DDU33_00040 PF00534 Glycosyl transferases group 1 DDU33_00040 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DDU33_00045 PF04932 O-Antigen ligase DDU33_00060 PF06078 Bacterial protein of unknown function (DUF937) DDU33_00065 PF02348 Cytidylyltransferase DDU33_00070 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDU33_00080 PF00581 Rhodanese-like domain DDU33_00085 PF01618 MotA/TolQ/ExbB proton channel family DDU33_00090 PF02472 Biopolymer transport protein ExbD/TolR DDU33_00095 PF03544 Gram-negative bacterial TonB protein C-terminal DDU33_00100 PF10063 Uncharacterized integral membrane protein (DUF2301) DDU33_00105 PF00694 Aconitase C-terminal domain DDU33_00110 PF00330 Aconitase family (aconitate hydratase) DDU33_00120 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DDU33_00125 PF02661 Fic/DOC family DDU33_00125 PF12728 Helix-turn-helix domain DDU33_00130 PF10431 C-terminal, D2-small domain, of ClpB protein DDU33_00130 PF07724 AAA domain (Cdc48 subfamily) DDU33_00130 PF06689 ClpX C4-type zinc finger DDU33_00135 PF00574 Clp protease DDU33_00140 PF02657 Fe-S metabolism associated domain DDU33_00155 PF00929 Exonuclease DDU33_00160 PF02631 RecX family DDU33_00165 PF00154 recA bacterial DNA recombination protein DDU33_00170 PF02687 FtsX-like permease family DDU33_00170 PF12704 MacB-like periplasmic core domain DDU33_00175 PF00005 ABC transporter DDU33_00180 PF02687 FtsX-like permease family DDU33_00180 PF12704 MacB-like periplasmic core domain DDU33_00185 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDU33_00185 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDU33_00190 PF00037 4Fe-4S binding domain DDU33_00195 PF00196 Bacterial regulatory proteins, luxR family DDU33_00195 PF00072 Response regulator receiver domain DDU33_00200 PF01170 Putative RNA methylase family UPF0020 DDU33_00200 PF02926 THUMP domain DDU33_00200 PF10672 S-adenosylmethionine-dependent methyltransferase DDU33_00205 PF01751 Toprim domain DDU33_00205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_00205 PF00986 DNA gyrase B subunit, carboxyl terminus DDU33_00205 PF00204 DNA gyrase B DDU33_00210 PF07690 Major Facilitator Superfamily DDU33_00215 PF01370 NAD dependent epimerase/dehydratase family DDU33_00220 PF01343 Peptidase family S49 DDU33_00225 PF02653 Branched-chain amino acid transport system / permease component DDU33_00230 PF00005 ABC transporter DDU33_00235 PF13407 Periplasmic binding protein domain DDU33_00240 PF00445 Ribonuclease T2 family DDU33_00245 PF17283 SprT-like zinc ribbon domain DDU33_00245 PF10263 SprT-like family DDU33_00250 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDU33_00255 PF08264 Anticodon-binding domain of tRNA DDU33_00255 PF00133 tRNA synthetases class I (I, L, M and V) DDU33_00255 PF10458 Valyl tRNA synthetase tRNA binding arm DDU33_00270 PF06414 Zeta toxin DDU33_00275 PF13673 Acetyltransferase (GNAT) domain DDU33_00280 PF01502 Phosphoribosyl-AMP cyclohydrolase DDU33_00280 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DDU33_00290 PF00977 Histidine biosynthesis protein DDU33_00295 PF00977 Histidine biosynthesis protein DDU33_00300 PF04480 Protein of unknown function (DUF559) DDU33_00305 PF03473 MOSC domain DDU33_00310 PF00117 Glutamine amidotransferase class-I DDU33_00325 PF00475 Imidazoleglycerol-phosphate dehydratase DDU33_00335 PF00155 Aminotransferase class I and II DDU33_00340 PF00815 Histidinol dehydrogenase DDU33_00350 PF01634 ATP phosphoribosyltransferase DDU33_00350 PF08029 HisG, C-terminal domain DDU33_00355 PF01259 SAICAR synthetase DDU33_00360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDU33_00365 PF04348 LppC putative lipoprotein DDU33_00370 PF02021 Uncharacterised protein family UPF0102 DDU33_00375 PF13580 SIS domain DDU33_00380 PF04972 BON domain DDU33_00390 PF13533 Biotin-lipoyl like DDU33_00395 PF00005 ABC transporter DDU33_00405 PF02321 Outer membrane efflux protein DDU33_00420 PF00462 Glutaredoxin DDU33_00425 PF03725 3' exoribonuclease family, domain 2 DDU33_00425 PF01138 3' exoribonuclease family, domain 1 DDU33_00430 PF03755 YicC-like family, N-terminal region DDU33_00430 PF08340 Domain of unknown function (DUF1732) DDU33_00435 PF01571 Aminomethyltransferase folate-binding domain DDU33_00440 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDU33_00445 PF01722 BolA-like protein DDU33_00455 PF05494 MlaC protein DDU33_00460 PF02470 MlaD protein DDU33_00465 PF02405 Permease MlaE DDU33_00470 PF00005 ABC transporter DDU33_00480 PF00595 PDZ domain DDU33_00485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DDU33_00490 PF00793 DAHP synthetase I family DDU33_00495 PF02153 Prephenate dehydrogenase DDU33_00495 PF01817 Chorismate mutase type II DDU33_00500 PF07233 Protein of unknown function (DUF1425) DDU33_00505 PF01230 HIT domain DDU33_00510 PF01351 Ribonuclease HII DDU33_00515 PF03193 RsgA GTPase DDU33_00520 PF03466 LysR substrate binding domain DDU33_00520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_00530 PF01042 Endoribonuclease L-PSP DDU33_00535 PF01063 Amino-transferase class IV DDU33_00540 PF00462 Glutaredoxin DDU33_00545 PF02132 RecR protein DDU33_00545 PF13662 Toprim domain DDU33_00550 PF02575 YbaB/EbfC DNA-binding family DDU33_00555 PF02843 Phosphoribosylglycinamide synthetase, C domain DDU33_00555 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DDU33_00555 PF02844 Phosphoribosylglycinamide synthetase, N domain DDU33_00560 PF01250 Ribosomal protein S6 DDU33_00565 PF00436 Single-strand binding protein family DDU33_00570 PF01084 Ribosomal protein S18 DDU33_00575 PF01281 Ribosomal protein L9, N-terminal domain DDU33_00575 PF03948 Ribosomal protein L9, C-terminal domain DDU33_00580 PF01479 S4 domain DDU33_00580 PF00849 RNA pseudouridylate synthase DDU33_00585 PF01300 Telomere recombination DDU33_00590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDU33_00590 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DDU33_00605 PF01177 Asp/Glu/Hydantoin racemase DDU33_00610 PF06993 Protein of unknown function (DUF1304) DDU33_00615 PF07690 Major Facilitator Superfamily DDU33_00620 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DDU33_00625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DDU33_00625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DDU33_00630 PF00459 Inositol monophosphatase family DDU33_00635 PF00293 NUDIX domain DDU33_00640 PF01479 S4 domain DDU33_00645 PF01430 Hsp33 protein DDU33_00650 PF06039 Malate:quinone oxidoreductase (Mqo) DDU33_00670 PF01914 MarC family integral membrane protein DDU33_00675 PF01026 TatD related DNase DDU33_00680 PF13361 UvrD-like helicase C-terminal domain DDU33_00680 PF00580 UvrD/REP helicase N-terminal domain DDU33_00685 PF00691 OmpA family DDU33_00685 PF01389 OmpA-like transmembrane domain DDU33_00695 PF04542 Sigma-70 region 2 DDU33_00695 PF08281 Sigma-70, region 4 DDU33_00705 PF00665 Integrase core domain DDU33_00705 PF13936 Helix-turn-helix domain DDU33_00720 PF05930 Prophage CP4-57 regulatory protein (AlpA) DDU33_00745 PF04829 Pre-toxin domain with VENN motif DDU33_00745 PF05860 haemagglutination activity domain DDU33_00745 PF13332 Hemagglutinin repeat DDU33_00745 PF13018 Extended Signal Peptide of Type V secretion system DDU33_00745 PF13018 Extended Signal Peptide of Type V secretion system DDU33_00745 PF04829 Pre-toxin domain with VENN motif DDU33_00745 PF13332 Hemagglutinin repeat DDU33_00745 PF05860 haemagglutination activity domain DDU33_00750 PF08479 POTRA domain, ShlB-type DDU33_00750 PF17287 POTRA domain DDU33_00750 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DDU33_00770 PF00440 Bacterial regulatory proteins, tetR family DDU33_00775 PF07690 Major Facilitator Superfamily DDU33_00780 PF02909 Tetracyclin repressor-like, C-terminal domain DDU33_00780 PF00440 Bacterial regulatory proteins, tetR family DDU33_00800 PF03616 Sodium/glutamate symporter DDU33_00820 PF00589 Phage integrase family DDU33_00820 PF13356 Arm DNA-binding domain DDU33_00830 PF04545 Sigma-70, region 4 DDU33_00830 PF04542 Sigma-70 region 2 DDU33_00830 PF00140 Sigma-70 factor, region 1.2 DDU33_00835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDU33_00840 PF02896 PEP-utilising enzyme, TIM barrel domain DDU33_00840 PF00391 PEP-utilising enzyme, mobile domain DDU33_00840 PF05524 PEP-utilising enzyme, N-terminal DDU33_00845 PF00381 PTS HPr component phosphorylation site DDU33_00850 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_00855 PF00005 ABC transporter DDU33_00860 PF02378 Phosphotransferase system, EIIC DDU33_00860 PF00367 phosphotransferase system, EIIB DDU33_00865 PF04403 Paraquat-inducible protein A DDU33_00870 PF13335 Magnesium chelatase, subunit ChlI C-terminal DDU33_00870 PF01078 Magnesium chelatase, subunit ChlI DDU33_00885 PF12697 Alpha/beta hydrolase family DDU33_00890 PF16582 Middle domain of thiamine pyrophosphate DDU33_00890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDU33_00890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDU33_00895 PF00579 tRNA synthetases class I (W and Y) DDU33_00900 PF12804 MobA-like NTP transferase domain DDU33_00905 PF06288 Protein of unknown function (DUF1040) DDU33_00910 PF01323 DSBA-like thioredoxin domain DDU33_00915 PF07690 Major Facilitator Superfamily DDU33_00920 PF00196 Bacterial regulatory proteins, luxR family DDU33_00920 PF00072 Response regulator receiver domain DDU33_00925 PF07730 Histidine kinase DDU33_00925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_00925 PF05231 MASE1 DDU33_00930 PF07690 Major Facilitator Superfamily DDU33_00935 PF01238 Phosphomannose isomerase type I DDU33_00940 PF05036 Sporulation related domain DDU33_00940 PF05036 Sporulation related domain DDU33_00945 PF04445 Putative SAM-dependent methyltransferase DDU33_00950 PF02557 D-alanyl-D-alanine carboxypeptidase DDU33_00955 PF03150 Di-haem cytochrome c peroxidase DDU33_00955 PF00034 Cytochrome c DDU33_00955 PF14376 Haem-binding domain DDU33_00965 PF07687 Peptidase dimerisation domain DDU33_00965 PF01546 Peptidase family M20/M25/M40 DDU33_00970 PF03960 ArsC family DDU33_00975 PF00809 Pterin binding enzyme DDU33_00980 PF01479 S4 domain DDU33_00980 PF00849 RNA pseudouridylate synthase DDU33_00985 PF05552 Conserved TM helix DDU33_00985 PF00924 Mechanosensitive ion channel DDU33_00990 PF03264 NapC/NirT cytochrome c family, N-terminal region DDU33_00995 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DDU33_01000 PF12837 4Fe-4S binding domain DDU33_01000 PF12801 4Fe-4S binding domain DDU33_01005 PF12800 4Fe-4S binding domain DDU33_01005 PF12838 4Fe-4S dicluster domain DDU33_01010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDU33_01010 PF10518 TAT (twin-arginine translocation) pathway signal sequence DDU33_01010 PF00384 Molybdopterin oxidoreductase DDU33_01010 PF01568 Molydopterin dinucleotide binding domain DDU33_01015 PF03927 NapD protein DDU33_01025 PF02525 Flavodoxin-like fold DDU33_01030 PF01476 LysM domain DDU33_01030 PF01551 Peptidase family M23 DDU33_01045 PF09335 SNARE associated Golgi protein DDU33_01050 PF01975 Survival protein SurE DDU33_01055 PF01142 tRNA pseudouridine synthase D (TruD) DDU33_01060 PF01926 50S ribosome-binding GTPase DDU33_01060 PF06071 Protein of unknown function (DUF933) DDU33_01065 PF01195 Peptidyl-tRNA hydrolase DDU33_01070 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DDU33_01070 PF01243 Pyridoxamine 5'-phosphate oxidase DDU33_01080 PF00271 Helicase conserved C-terminal domain DDU33_01080 PF00270 DEAD/DEAH box helicase DDU33_01085 PF03737 Aldolase/RraA DDU33_01090 PF16360 GTP-binding GTPase Middle Region DDU33_01090 PF13167 GTP-binding GTPase N-terminal DDU33_01090 PF01926 50S ribosome-binding GTPase DDU33_01095 PF17209 Hfq protein DDU33_01105 PF12805 FUSC-like inner membrane protein yccS DDU33_01110 PF03610 PTS system fructose IIA component DDU33_01110 PF03830 PTS system sorbose subfamily IIB component DDU33_01115 PF03609 PTS system sorbose-specific iic component DDU33_01120 PF03613 PTS system mannose/fructose/sorbose family IID component DDU33_01130 PF02142 MGS-like domain DDU33_01140 PF07690 Major Facilitator Superfamily DDU33_01145 PF00291 Pyridoxal-phosphate dependent enzyme DDU33_01145 PF14821 Threonine synthase N terminus DDU33_01150 PF00474 Sodium:solute symporter family DDU33_01155 PF06196 Protein of unknown function (DUF997) DDU33_01160 PF01340 Met Apo-repressor, MetJ DDU33_01165 PF04333 MlaA lipoprotein DDU33_01175 PF01243 Pyridoxamine 5'-phosphate oxidase DDU33_01180 PF06228 Haem utilisation ChuX/HutX DDU33_01185 PF00005 ABC transporter DDU33_01190 PF01032 FecCD transport family DDU33_01195 PF01497 Periplasmic binding protein DDU33_01200 PF00121 Triosephosphate isomerase DDU33_01205 PF02463 RecF/RecN/SMC N terminal domain DDU33_01210 PF01119 DNA mismatch repair protein, C-terminal domain DDU33_01210 PF08676 MutL C terminal dimerisation domain DDU33_01215 PF00171 Aldehyde dehydrogenase family DDU33_01225 PF03099 Biotin/lipoate A/B protein ligase family DDU33_01225 PF02237 Biotin protein ligase C terminal domain DDU33_01230 PF01565 FAD binding domain DDU33_01230 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DDU33_01235 PF00027 Cyclic nucleotide-binding domain DDU33_01235 PF13545 Crp-like helix-turn-helix domain DDU33_01240 PF06794 Uncharacterised protein family (UPF0270) DDU33_01245 PF00440 Bacterial regulatory proteins, tetR family DDU33_01250 PF00692 dUTPase DDU33_01255 PF01501 Glycosyl transferase family 8 DDU33_01260 PF02441 Flavoprotein DDU33_01260 PF04127 DNA / pantothenate metabolism flavoprotein DDU33_01265 PF04002 RadC-like JAB domain DDU33_01270 PF01098 Cell cycle protein DDU33_01275 PF08245 Mur ligase middle domain DDU33_01275 PF02875 Mur ligase family, glutamate ligase domain DDU33_01280 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DDU33_01280 PF00953 Glycosyl transferase family 4 DDU33_01285 PF08245 Mur ligase middle domain DDU33_01285 PF02875 Mur ligase family, glutamate ligase domain DDU33_01285 PF01225 Mur ligase family, catalytic domain DDU33_01295 PF08245 Mur ligase middle domain DDU33_01295 PF01225 Mur ligase family, catalytic domain DDU33_01295 PF02875 Mur ligase family, glutamate ligase domain DDU33_01300 PF03717 Penicillin-binding Protein dimerisation domain DDU33_01300 PF00905 Penicillin binding protein transpeptidase domain DDU33_01305 PF04999 Cell division protein FtsL DDU33_01310 PF01795 MraW methylase family DDU33_01315 PF00773 RNB domain DDU33_01315 PF08206 Ribonuclease B OB domain DDU33_01315 PF00575 S1 RNA binding domain DDU33_01315 PF08461 Ribonuclease R winged-helix domain DDU33_01315 PF17876 Cold shock domain DDU33_01320 PF10410 DnaB-helicase binding domain of primase DDU33_01320 PF08275 DNA primase catalytic core, N-terminal domain DDU33_01320 PF01807 CHC2 zinc finger DDU33_01320 PF08278 DNA primase DnaG DnaB-binding DDU33_01325 PF01165 Ribosomal protein S21 DDU33_01330 PF02397 Bacterial sugar transferase DDU33_01335 PF00535 Glycosyl transferase family 2 DDU33_01340 PF00535 Glycosyl transferase family 2 DDU33_01365 PF00005 ABC transporter DDU33_01370 PF01061 ABC-2 type transporter DDU33_01375 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DDU33_01380 PF04321 RmlD substrate binding domain DDU33_01385 PF00483 Nucleotidyl transferase DDU33_01390 PF16363 GDP-mannose 4,6 dehydratase DDU33_01395 PF01521 Iron-sulphur cluster biosynthesis DDU33_01400 PF00230 Major intrinsic protein DDU33_01410 PF18389 TrmO C-terminal domain DDU33_01410 PF01980 tRNA-methyltransferase O DDU33_01415 PF01040 UbiA prenyltransferase family DDU33_01420 PF01479 S4 domain DDU33_01420 PF00579 tRNA synthetases class I (W and Y) DDU33_01425 PF00149 Calcineurin-like phosphoesterase DDU33_01430 PF00293 NUDIX domain DDU33_01435 PF01648 4'-phosphopantetheinyl transferase superfamily DDU33_01440 PF00892 EamA-like transporter family DDU33_01445 PF06965 Na+/H+ antiporter 1 DDU33_01450 PF04488 Glycosyltransferase sugar-binding region containing DXD motif DDU33_01455 PF01220 Dehydroquinase class II DDU33_01460 PF04055 Radical SAM superfamily DDU33_01460 PF06968 Biotin and Thiamin Synthesis associated domain DDU33_01465 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_01465 PF14602 Hexapeptide repeat of succinyl-transferase DDU33_01465 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DDU33_01470 PF02580 D-Tyr-tRNA(Tyr) deacylase DDU33_01475 PF03631 Virulence factor BrkB DDU33_01480 PF04219 Protein of unknown function, DUF DDU33_01485 PF05958 tRNA (Uracil-5-)-methyltransferase DDU33_01495 PF01544 CorA-like Mg2+ transporter protein DDU33_01500 PF02416 mttA/Hcf106 family DDU33_01510 PF00902 Sec-independent protein translocase protein (TatC) DDU33_01515 PF00490 Delta-aminolevulinic acid dehydratase DDU33_01520 PF03144 Elongation factor Tu domain 2 DDU33_01520 PF00009 Elongation factor Tu GTP binding domain DDU33_01520 PF16658 Class II release factor RF3, C-terminal domain DDU33_01525 PF04542 Sigma-70 region 2 DDU33_01525 PF00140 Sigma-70 factor, region 1.2 DDU33_01525 PF03979 Sigma-70 factor, region 1.1 DDU33_01525 PF04546 Sigma-70, non-essential region DDU33_01525 PF04545 Sigma-70, region 4 DDU33_01525 PF04539 Sigma-70 region 3 DDU33_01535 PF05175 Methyltransferase small domain DDU33_01540 PF00719 Inorganic pyrophosphatase DDU33_01550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDU33_01550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDU33_01555 PF03480 Bacterial extracellular solute-binding protein, family 7 DDU33_01560 PF00665 Integrase core domain DDU33_01560 PF13936 Helix-turn-helix domain DDU33_01565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DDU33_01570 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DDU33_01575 PF04074 YhcH/YjgK/YiaL DDU33_01580 PF02615 Malate/L-lactate dehydrogenase DDU33_01585 PF09339 IclR helix-turn-helix domain DDU33_01585 PF01614 Bacterial transcriptional regulator DDU33_01590 PF02080 TrkA-C domain DDU33_01590 PF03600 Citrate transporter DDU33_01595 PF02899 Phage integrase, N-terminal SAM-like domain DDU33_01595 PF00589 Phage integrase family DDU33_01600 PF17347 Family of unknown function (DUF5377) DDU33_01610 PF08241 Methyltransferase domain DDU33_01615 PF04301 Protein of unknown function (DUF452) DDU33_01620 PF00155 Aminotransferase class I and II DDU33_01625 PF00202 Aminotransferase class-III DDU33_01630 PF02092 Glycyl-tRNA synthetase beta subunit DDU33_01630 PF05746 DALR anticodon binding domain DDU33_01645 PF00328 Histidine phosphatase superfamily (branch 2) DDU33_01655 PF13417 Glutathione S-transferase, N-terminal domain DDU33_01660 PF02091 Glycyl-tRNA synthetase alpha subunit DDU33_01670 PF08007 Cupin superfamily protein DDU33_01675 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DDU33_01675 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DDU33_01680 PF12951 Passenger-associated-transport-repeat DDU33_01685 PF03797 Autotransporter beta-domain DDU33_01685 PF03212 Pertactin DDU33_01690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDU33_01690 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DDU33_01695 PF03358 NADPH-dependent FMN reductase DDU33_01700 PF04364 DNA polymerase III chi subunit, HolC DDU33_01710 PF01476 LysM domain DDU33_01715 PF05698 Bacterial trigger factor protein (TF) C-terminus DDU33_01715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDU33_01715 PF05697 Bacterial trigger factor protein (TF) DDU33_01720 PF00581 Rhodanese-like domain DDU33_01725 PF02556 Preprotein translocase subunit SecB DDU33_01730 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DDU33_01730 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DDU33_01735 PF06426 Serine acetyltransferase, N-terminal DDU33_01735 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_01740 PF04304 Protein of unknown function (DUF454) DDU33_01745 PF02709 N-terminal domain of galactosyltransferase DDU33_01745 PF00535 Glycosyl transferase family 2 DDU33_01750 PF00149 Calcineurin-like phosphoesterase DDU33_01755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDU33_01755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDU33_01765 PF00083 Sugar (and other) transporter DDU33_01770 PF12833 Helix-turn-helix domain DDU33_01775 PF07509 Protein of unknown function (DUF1523) DDU33_01780 PF01026 TatD related DNase DDU33_01785 PF01263 Aldose 1-epimerase DDU33_01790 PF00912 Transglycosylase DDU33_01790 PF00905 Penicillin binding protein transpeptidase domain DDU33_01790 PF14814 Bifunctional transglycosylase second domain DDU33_01795 PF00378 Enoyl-CoA hydratase/isomerase DDU33_01800 PF13291 ACT domain DDU33_01800 PF04607 Region found in RelA / SpoT proteins DDU33_01800 PF02824 TGS domain DDU33_01805 PF01192 RNA polymerase Rpb6 DDU33_01810 PF00005 ABC transporter DDU33_01810 PF08402 TOBE domain DDU33_01815 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_01830 PF00444 Ribosomal protein L36 DDU33_01835 PF01197 Ribosomal protein L31 DDU33_01840 PF00834 Ribulose-phosphate 3 epimerase family DDU33_01845 PF00550 Phosphopantetheine attachment site DDU33_01850 PF00289 Biotin carboxylase, N-terminal domain DDU33_01850 PF02785 Biotin carboxylase C-terminal domain DDU33_01850 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDU33_01855 PF00364 Biotin-requiring enzyme DDU33_01860 PF00009 Elongation factor Tu GTP binding domain DDU33_01860 PF03144 Elongation factor Tu domain 2 DDU33_01860 PF03143 Elongation factor Tu C-terminal domain DDU33_01885 PF00485 Phosphoribulokinase / Uridine kinase family DDU33_01890 PF08534 Redoxin DDU33_01900 PF03918 Cytochrome C biogenesis protein DDU33_01905 PF03918 Cytochrome C biogenesis protein DDU33_01910 PF00994 Probable molybdopterin binding domain DDU33_01920 PF01048 Phosphorylase superfamily DDU33_01925 PF04055 Radical SAM superfamily DDU33_01925 PF18693 TRAM domain DDU33_01925 PF00919 Uncharacterized protein family UPF0004 DDU33_01930 PF18254 HMW1 domain 2 DDU33_01930 PF18071 HMW1C N-terminal DDU33_01940 PF13018 Extended Signal Peptide of Type V secretion system DDU33_01940 PF03895 YadA-like membrane anchor domain DDU33_01940 PF05658 Head domain of trimeric autotransporter adhesin DDU33_01940 PF05662 Coiled stalk of trimeric autotransporter adhesin DDU33_01945 PF00258 Flavodoxin DDU33_01955 PF03841 L-seryl-tRNA selenium transferase DDU33_01985 PF01177 Asp/Glu/Hydantoin racemase DDU33_01990 PF03590 Aspartate-ammonia ligase DDU33_01995 PF01037 Lrp/AsnC ligand binding domain DDU33_01995 PF13404 AsnC-type helix-turn-helix domain DDU33_02000 PF09115 DNA polymerase III, delta subunit, C terminal DDU33_02005 PF02223 Thymidylate kinase DDU33_02010 PF02618 YceG-like family DDU33_02030 PF01245 Ribosomal protein L19 DDU33_02035 PF01746 tRNA (Guanine-1)-methyltransferase DDU33_02040 PF05239 PRC-barrel domain DDU33_02040 PF01782 RimM N-terminal domain DDU33_02045 PF00886 Ribosomal protein S16 DDU33_02050 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDU33_02050 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDU33_02055 PF00005 ABC transporter DDU33_02055 PF06472 ABC transporter transmembrane region 2 DDU33_02060 PF05193 Peptidase M16 inactive domain DDU33_02060 PF00675 Insulinase (Peptidase family M16) DDU33_02080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDU33_02080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDU33_02080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDU33_02080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDU33_02085 PF01196 Ribosomal protein L17 DDU33_02090 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DDU33_02090 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DDU33_02090 PF01000 RNA polymerase Rpb3/RpoA insert domain DDU33_02095 PF01479 S4 domain DDU33_02095 PF00163 Ribosomal protein S4/S9 N-terminal domain DDU33_02100 PF00411 Ribosomal protein S11 DDU33_02105 PF00416 Ribosomal protein S13/S18 DDU33_02110 PF00444 Ribosomal protein L36 DDU33_02115 PF00344 SecY translocase DDU33_02120 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DDU33_02125 PF00327 Ribosomal protein L30p/L7e DDU33_02130 PF00333 Ribosomal protein S5, N-terminal domain DDU33_02130 PF03719 Ribosomal protein S5, C-terminal domain DDU33_02135 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DDU33_02140 PF00347 Ribosomal protein L6 DDU33_02145 PF00410 Ribosomal protein S8 DDU33_02150 PF00253 Ribosomal protein S14p/S29e DDU33_02155 PF00673 ribosomal L5P family C-terminus DDU33_02155 PF00281 Ribosomal protein L5 DDU33_02160 PF00467 KOW motif DDU33_02160 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DDU33_02165 PF00238 Ribosomal protein L14p/L23e DDU33_02170 PF01649 Ribosomal protein S20 DDU33_02175 PF03023 Lipid II flippase MurJ DDU33_02180 PF01966 HD domain DDU33_02180 PF13286 Phosphohydrolase-associated domain DDU33_02185 PF17191 RecG wedge domain DDU33_02185 PF00270 DEAD/DEAH box helicase DDU33_02185 PF00271 Helicase conserved C-terminal domain DDU33_02190 PF00571 CBS domain DDU33_02190 PF01380 SIS domain DDU33_02195 PF02595 Glycerate kinase family DDU33_02200 PF02447 GntP family permease DDU33_02205 PF13556 PucR C-terminal helix-turn-helix domain DDU33_02205 PF17853 GGDEF-like domain DDU33_02205 PF05651 Putative sugar diacid recognition DDU33_02215 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DDU33_02215 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DDU33_02220 PF00206 Lyase DDU33_02220 PF10415 Fumarase C C-terminus DDU33_02225 PF03797 Autotransporter beta-domain DDU33_02225 PF12951 Passenger-associated-transport-repeat DDU33_02225 PF00082 Subtilase family DDU33_02230 PF02881 SRP54-type protein, helical bundle domain DDU33_02230 PF00448 SRP54-type protein, GTPase domain DDU33_02230 PF02978 Signal peptide binding domain DDU33_02245 PF01464 Transglycosylase SLT domain DDU33_02245 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DDU33_02250 PF04362 Bacterial Fe(2+) trafficking DDU33_02255 PF14815 NUDIX domain DDU33_02255 PF00730 HhH-GPD superfamily base excision DNA repair protein DDU33_02260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDU33_02265 PF17746 SfsA N-terminal OB domain DDU33_02265 PF03749 Sugar fermentation stimulation protein RE domain DDU33_02270 PF00227 Proteasome subunit DDU33_02280 PF07724 AAA domain (Cdc48 subfamily) DDU33_02280 PF00004 ATPase family associated with various cellular activities (AAA) DDU33_02280 PF10431 C-terminal, D2-small domain, of ClpB protein DDU33_02290 PF00501 AMP-binding enzyme DDU33_02295 PF03313 Serine dehydratase alpha chain DDU33_02305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDU33_02305 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DDU33_02315 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_02320 PF00291 Pyridoxal-phosphate dependent enzyme DDU33_02325 PF00392 Bacterial regulatory proteins, gntR family DDU33_02325 PF00155 Aminotransferase class I and II DDU33_02330 PF00596 Class II Aldolase and Adducin N-terminal domain DDU33_02335 PF01261 Xylose isomerase-like TIM barrel DDU33_02340 PF00455 DeoR C terminal sensor domain DDU33_02340 PF08220 DeoR-like helix-turn-helix domain DDU33_02350 PF03611 PTS system sugar-specific permease component DDU33_02355 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDU33_02360 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DDU33_02375 PF04233 Phage Mu protein F like protein DDU33_02380 PF01381 Helix-turn-helix DDU33_02400 PF01523 Putative modulator of DNA gyrase DDU33_02405 PF04055 Radical SAM superfamily DDU33_02410 PF03099 Biotin/lipoate A/B protein ligase family DDU33_02415 PF04359 Protein of unknown function (DUF493) DDU33_02420 PF07943 Penicillin-binding protein 5, C-terminal domain DDU33_02420 PF00768 D-alanyl-D-alanine carboxypeptidase DDU33_02425 PF03330 Lytic transglycolase DDU33_02430 PF01098 Cell cycle protein DDU33_02435 PF00905 Penicillin binding protein transpeptidase domain DDU33_02435 PF03717 Penicillin-binding Protein dimerisation domain DDU33_02440 PF02590 Predicted SPOUT methyltransferase DDU33_02450 PF05190 MutS family domain IV DDU33_02450 PF00488 MutS domain V DDU33_02450 PF05188 MutS domain II DDU33_02450 PF01624 MutS domain I DDU33_02450 PF05192 MutS domain III DDU33_02455 PF02798 Glutathione S-transferase, N-terminal domain DDU33_02455 PF00043 Glutathione S-transferase, C-terminal domain DDU33_02460 PF01381 Helix-turn-helix DDU33_02465 PF13657 HipA N-terminal domain DDU33_02470 PF07804 HipA-like C-terminal domain DDU33_02480 PF17311 Family of unknown function (DUF5358) DDU33_02495 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DDU33_02505 PF01467 Cytidylyltransferase-like DDU33_02515 PF02563 Polysaccharide biosynthesis/export protein DDU33_02525 PF01061 ABC-2 type transporter DDU33_02530 PF00005 ABC transporter DDU33_02535 PF01678 Diaminopimelate epimerase DDU33_02540 PF03605 Anaerobic c4-dicarboxylate membrane transporter DDU33_02545 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DDU33_02555 PF04102 SlyX DDU33_02560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DDU33_02560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDU33_02565 PF08348 YheO-like PAS domain DDU33_02565 PF13309 HTH domain DDU33_02570 PF02635 DsrE/DsrF-like family DDU33_02575 PF02635 DsrE/DsrF-like family DDU33_02580 PF04077 DsrH like protein DDU33_02585 PF00152 tRNA synthetases class II (D, K and N) DDU33_02590 PF03605 Anaerobic c4-dicarboxylate membrane transporter DDU33_02595 PF02910 Fumarate reductase flavoprotein C-term DDU33_02595 PF00890 FAD binding domain DDU33_02600 PF13183 4Fe-4S dicluster domain DDU33_02600 PF13085 2Fe-2S iron-sulfur cluster binding domain DDU33_02605 PF02300 Fumarate reductase subunit C DDU33_02610 PF02313 Fumarate reductase subunit D DDU33_02620 PF01741 Large-conductance mechanosensitive channel, MscL DDU33_02625 PF12724 Flavodoxin domain DDU33_02630 PF02386 Cation transport protein DDU33_02635 PF09186 Domain of unknown function (DUF1949) DDU33_02635 PF01205 Uncharacterized protein family UPF0029 DDU33_02645 PF00551 Formyl transferase DDU33_02645 PF02911 Formyl transferase, C-terminal domain DDU33_02655 PF01774 UreD urease accessory protein DDU33_02660 PF02492 CobW/HypB/UreG, nucleotide-binding domain DDU33_02665 PF01730 UreF DDU33_02670 PF05194 UreE urease accessory protein, C-terminal domain DDU33_02670 PF02814 UreE urease accessory protein, N-terminal domain DDU33_02680 PF00893 Small Multidrug Resistance protein DDU33_02685 PF00449 Urease alpha-subunit, N-terminal domain DDU33_02685 PF01979 Amidohydrolase family DDU33_02690 PF00699 Urease beta subunit DDU33_02695 PF00547 Urease, gamma subunit DDU33_02705 PF00005 ABC transporter DDU33_02715 PF01891 Cobalt uptake substrate-specific transmembrane region DDU33_02725 PF10670 Domain of unknown function (DUF4198) DDU33_02735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_02735 PF03466 LysR substrate binding domain DDU33_02745 PF02525 Flavodoxin-like fold DDU33_02755 PF00106 short chain dehydrogenase DDU33_02765 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_02775 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DDU33_02780 PF02567 Phenazine biosynthesis-like protein DDU33_02785 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DDU33_02800 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DDU33_02810 PF13173 AAA domain DDU33_02810 PF13635 Domain of unknown function (DUF4143) DDU33_02815 PF03466 LysR substrate binding domain DDU33_02815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_02835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDU33_02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_02845 PF03466 LysR substrate binding domain DDU33_02870 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDU33_02870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDU33_02875 PF01022 Bacterial regulatory protein, arsR family DDU33_02890 PF07690 Major Facilitator Superfamily DDU33_02910 PF02384 N-6 DNA Methylase DDU33_02910 PF12161 HsdM N-terminal domain DDU33_02920 PF01420 Type I restriction modification DNA specificity domain DDU33_02925 PF08676 MutL C terminal dimerisation domain DDU33_02925 PF01119 DNA mismatch repair protein, C-terminal domain DDU33_02930 PF18766 SWI2/SNF2 ATPase DDU33_02930 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DDU33_02930 PF11867 Domain of unknown function (DUF3387) DDU33_02945 PF00665 Integrase core domain DDU33_02945 PF13936 Helix-turn-helix domain DDU33_02955 PF13936 Helix-turn-helix domain DDU33_02955 PF00665 Integrase core domain DDU33_02970 PF00873 AcrB/AcrD/AcrF family DDU33_02975 PF12706 Beta-lactamase superfamily domain DDU33_02980 PF12833 Helix-turn-helix domain DDU33_03005 PF13411 MerR HTH family regulatory protein DDU33_03010 PF01545 Cation efflux family DDU33_03015 PF13460 NAD(P)H-binding DDU33_03025 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDU33_03025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDU33_03030 PF01022 Bacterial regulatory protein, arsR family DDU33_03035 PF06719 AraC-type transcriptional regulator N-terminus DDU33_03035 PF12833 Helix-turn-helix domain DDU33_03045 PF03328 HpcH/HpaI aldolase/citrate lyase family DDU33_03055 PF02566 OsmC-like protein DDU33_03070 PF01758 Sodium Bile acid symporter family DDU33_03075 PF03960 ArsC family DDU33_03085 PF01638 HxlR-like helix-turn-helix DDU33_03090 PF02527 rRNA small subunit methyltransferase G DDU33_03095 PF01134 Glucose inhibited division protein A DDU33_03095 PF13932 GidA associated domain DDU33_03100 PF02810 SEC-C motif DDU33_03110 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDU33_03115 PF05159 Capsule polysaccharide biosynthesis protein DDU33_03120 PF05159 Capsule polysaccharide biosynthesis protein DDU33_03125 PF01841 Transglutaminase-like superfamily DDU33_03135 PF00403 Heavy-metal-associated domain DDU33_03140 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) DDU33_03145 PF00356 Bacterial regulatory proteins, lacI family DDU33_03145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DDU33_03150 PF01202 Shikimate kinase DDU33_03155 PF02447 GntP family permease DDU33_03160 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_03165 PF00005 ABC transporter DDU33_03170 PF04175 Protein of unknown function (DUF406) DDU33_03180 PF00119 ATP synthase A chain DDU33_03185 PF00137 ATP synthase subunit C DDU33_03190 PF00430 ATP synthase B/B' CF(0) DDU33_03195 PF00213 ATP synthase delta (OSCP) subunit DDU33_03200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDU33_03200 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDU33_03200 PF00306 ATP synthase alpha/beta chain, C terminal domain DDU33_03205 PF00231 ATP synthase DDU33_03210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDU33_03210 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDU33_03215 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DDU33_03220 PF00356 Bacterial regulatory proteins, lacI family DDU33_03225 PF05025 RbsD / FucU transport protein family DDU33_03230 PF00005 ABC transporter DDU33_03235 PF02653 Branched-chain amino acid transport system / permease component DDU33_03240 PF13407 Periplasmic binding protein domain DDU33_03245 PF00294 pfkB family carbohydrate kinase DDU33_03275 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) DDU33_03280 PF00710 Asparaginase, N-terminal DDU33_03280 PF17763 Glutaminase/Asparaginase C-terminal domain DDU33_03295 PF13286 Phosphohydrolase-associated domain DDU33_03295 PF01966 HD domain DDU33_03300 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DDU33_03300 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DDU33_03300 PF02769 AIR synthase related protein, C-terminal domain DDU33_03305 PF07274 Protein of unknown function (DUF1440) DDU33_03310 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDU33_03310 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDU33_03315 PF00230 Major intrinsic protein DDU33_03320 PF03009 Glycerophosphoryl diester phosphodiesterase family DDU33_03330 PF07690 Major Facilitator Superfamily DDU33_03335 PF04324 BFD-like [2Fe-2S] binding domain DDU33_03335 PF01266 FAD dependent oxidoreductase DDU33_03340 PF00890 FAD binding domain DDU33_03345 PF02754 Cysteine-rich domain DDU33_03345 PF13183 4Fe-4S dicluster domain DDU33_03350 PF00171 Aldehyde dehydrogenase family DDU33_03365 PF00893 Small Multidrug Resistance protein DDU33_03370 PF01814 Hemerythrin HHE cation binding domain DDU33_03370 PF04405 Domain of Unknown function (DUF542) DDU33_03375 PF01370 NAD dependent epimerase/dehydratase family DDU33_03380 PF00593 TonB dependent receptor DDU33_03380 PF07715 TonB-dependent Receptor Plug Domain DDU33_03390 PF01327 Polypeptide deformylase DDU33_03395 PF17782 DprA winged helix domain DDU33_03395 PF02481 DNA recombination-mediator protein A DDU33_03400 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DDU33_03405 PF00467 KOW motif DDU33_03405 PF02357 Transcription termination factor nusG DDU33_03410 PF03946 Ribosomal protein L11, N-terminal domain DDU33_03410 PF00298 Ribosomal protein L11, RNA binding domain DDU33_03415 PF00687 Ribosomal protein L1p/L10e family DDU33_03420 PF00466 Ribosomal protein L10 DDU33_03425 PF16320 Ribosomal protein L7/L12 dimerisation domain DDU33_03425 PF00542 Ribosomal protein L7/L12 C-terminal domain DDU33_03430 PF00596 Class II Aldolase and Adducin N-terminal domain DDU33_03435 PF05025 RbsD / FucU transport protein family DDU33_03440 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDU33_03440 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDU33_03445 PF07882 L-fucose isomerase, second N-terminal domain DDU33_03445 PF07881 L-fucose isomerase, first N-terminal domain DDU33_03445 PF02952 L-fucose isomerase, C-terminal domain DDU33_03450 PF03783 Curli production assembly/transport component CsgG DDU33_03460 PF05643 Putative bacterial lipoprotein (DUF799) DDU33_03465 PF08220 DeoR-like helix-turn-helix domain DDU33_03465 PF00455 DeoR C terminal sensor domain DDU33_03470 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDU33_03470 PF02378 Phosphotransferase system, EIIC DDU33_03470 PF00367 phosphotransferase system, EIIB DDU33_03475 PF00465 Iron-containing alcohol dehydrogenase DDU33_03480 PF13407 Periplasmic binding protein domain DDU33_03485 PF02653 Branched-chain amino acid transport system / permease component DDU33_03490 PF00005 ABC transporter DDU33_03495 PF04563 RNA polymerase beta subunit DDU33_03495 PF04561 RNA polymerase Rpb2, domain 2 DDU33_03495 PF10385 RNA polymerase beta subunit external 1 domain DDU33_03495 PF00562 RNA polymerase Rpb2, domain 6 DDU33_03495 PF04560 RNA polymerase Rpb2, domain 7 DDU33_03495 PF04565 RNA polymerase Rpb2, domain 3 DDU33_03500 PF04998 RNA polymerase Rpb1, domain 5 DDU33_03500 PF04997 RNA polymerase Rpb1, domain 1 DDU33_03500 PF05000 RNA polymerase Rpb1, domain 4 DDU33_03500 PF04983 RNA polymerase Rpb1, domain 3 DDU33_03500 PF00623 RNA polymerase Rpb1, domain 2 DDU33_03515 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DDU33_03520 PF00768 D-alanyl-D-alanine carboxypeptidase DDU33_03525 PF04994 TfoX C-terminal domain DDU33_03525 PF04993 TfoX N-terminal domain DDU33_03530 PF00338 Ribosomal protein S10p/S20e DDU33_03535 PF00297 Ribosomal protein L3 DDU33_03540 PF00573 Ribosomal protein L4/L1 family DDU33_03545 PF00276 Ribosomal protein L23 DDU33_03550 PF03947 Ribosomal Proteins L2, C-terminal domain DDU33_03550 PF00181 Ribosomal Proteins L2, RNA binding domain DDU33_03555 PF00203 Ribosomal protein S19 DDU33_03560 PF00237 Ribosomal protein L22p/L17e DDU33_03565 PF07650 KH domain DDU33_03565 PF00189 Ribosomal protein S3, C-terminal domain DDU33_03570 PF00252 Ribosomal protein L16p/L10e DDU33_03575 PF00831 Ribosomal L29 protein DDU33_03580 PF00366 Ribosomal protein S17 DDU33_03585 PF02080 TrkA-C domain DDU33_03585 PF02254 TrkA-N domain DDU33_03590 PF01029 NusB family DDU33_03590 PF01189 16S rRNA methyltransferase RsmB/F DDU33_03595 PF00009 Elongation factor Tu GTP binding domain DDU33_03595 PF09107 Elongation factor SelB, winged helix DDU33_03595 PF09106 Elongation factor SelB, winged helix DDU33_03595 PF03144 Elongation factor Tu domain 2 DDU33_03600 PF04073 Aminoacyl-tRNA editing domain DDU33_03600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDU33_03600 PF03129 Anticodon binding domain DDU33_03615 PF00455 DeoR C terminal sensor domain DDU33_03615 PF08220 DeoR-like helix-turn-helix domain DDU33_03620 PF01380 SIS domain DDU33_03625 PF02627 Carboxymuconolactone decarboxylase family DDU33_03635 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DDU33_03640 PF07732 Multicopper oxidase DDU33_03640 PF07731 Multicopper oxidase DDU33_03645 PF01553 Acyltransferase DDU33_03650 PF08534 Redoxin DDU33_03655 PF00293 NUDIX domain DDU33_03660 PF01925 Sulfite exporter TauE/SafE DDU33_03665 PF01790 Prolipoprotein diacylglyceryl transferase DDU33_03670 PF08218 Citrate lyase ligase C-terminal domain DDU33_03675 PF13419 Haloacid dehalogenase-like hydrolase DDU33_03690 PF04175 Protein of unknown function (DUF406) DDU33_03695 PF03222 Tryptophan/tyrosine permease family DDU33_03705 PF00953 Glycosyl transferase family 4 DDU33_03710 PF00202 Aminotransferase class-III DDU33_03715 PF00535 Glycosyl transferase family 2 DDU33_03715 PF01501 Glycosyl transferase family 8 DDU33_03720 PF08543 Phosphomethylpyrimidine kinase DDU33_03725 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DDU33_03725 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DDU33_03730 PF00258 Flavodoxin DDU33_03730 PF00175 Oxidoreductase NAD-binding domain DDU33_03730 PF00667 FAD binding domain DDU33_03735 PF03702 Anhydro-N-acetylmuramic acid kinase DDU33_03740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDU33_03740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDU33_03745 PF02613 Nitrate reductase delta subunit DDU33_03750 PF18364 Molybdopterin oxidoreductase N-terminal domain DDU33_03750 PF00384 Molybdopterin oxidoreductase DDU33_03750 PF01568 Molydopterin dinucleotide binding domain DDU33_03755 PF03264 NapC/NirT cytochrome c family, N-terminal region DDU33_03770 PF01380 SIS domain DDU33_03790 PF02678 Pirin DDU33_03790 PF17954 Quercetinase C-terminal cupin domain DDU33_03795 PF01507 Phosphoadenosine phosphosulfate reductase family DDU33_03800 PF01507 Phosphoadenosine phosphosulfate reductase family DDU33_03805 PF00009 Elongation factor Tu GTP binding domain DDU33_03810 PF00543 Nitrogen regulatory protein P-II DDU33_03815 PF01252 Signal peptidase (SPase) II DDU33_03820 PF02401 LytB protein DDU33_03825 PF03937 Flavinator of succinate dehydrogenase DDU33_03830 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DDU33_03835 PF00164 Ribosomal protein S12/S23 DDU33_03840 PF00177 Ribosomal protein S7p/S5e DDU33_03845 PF00679 Elongation factor G C-terminus DDU33_03845 PF03144 Elongation factor Tu domain 2 DDU33_03845 PF00009 Elongation factor Tu GTP binding domain DDU33_03845 PF03764 Elongation factor G, domain IV DDU33_03845 PF14492 Elongation Factor G, domain II DDU33_03850 PF03143 Elongation factor Tu C-terminal domain DDU33_03850 PF03144 Elongation factor Tu domain 2 DDU33_03850 PF00009 Elongation factor Tu GTP binding domain DDU33_03865 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DDU33_03875 PF02666 Phosphatidylserine decarboxylase DDU33_03885 PF04225 Opacity-associated protein A LysM-like domain DDU33_03885 PF08525 Opacity-associated protein A N-terminal motif DDU33_03895 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DDU33_03910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDU33_03910 PF10414 Sirohaem synthase dimerisation region DDU33_03910 PF14824 Sirohaem biosynthesis protein central DDU33_03920 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_03925 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_03930 PF17850 CysA C-terminal regulatory domain DDU33_03930 PF12857 TOBE-like domain DDU33_03930 PF00005 ABC transporter DDU33_03940 PF04076 Bacterial OB fold (BOF) protein DDU33_03945 PF04303 PrpF protein DDU33_03950 PF00939 Sodium:sulfate symporter transmembrane region DDU33_03955 PF07702 UTRA domain DDU33_03955 PF00392 Bacterial regulatory proteins, gntR family DDU33_03960 PF06434 Aconitate hydratase 2 N-terminus DDU33_03960 PF00330 Aconitase family (aconitate hydratase) DDU33_03960 PF11791 Aconitate B N-terminal domain DDU33_03975 PF00175 Oxidoreductase NAD-binding domain DDU33_03975 PF00970 Oxidoreductase FAD-binding domain DDU33_03975 PF00111 2Fe-2S iron-sulfur cluster binding domain DDU33_03980 PF03063 Prismane/CO dehydrogenase family DDU33_03990 PF00120 Glutamine synthetase, catalytic domain DDU33_03990 PF03951 Glutamine synthetase, beta-Grasp domain DDU33_04045 PF02899 Phage integrase, N-terminal SAM-like domain DDU33_04045 PF00589 Phage integrase family DDU33_04050 PF09179 TilS substrate binding domain DDU33_04050 PF11734 TilS substrate C-terminal domain DDU33_04050 PF01171 PP-loop family DDU33_04055 PF01926 50S ribosome-binding GTPase DDU33_04055 PF12631 MnmE helical domain DDU33_04055 PF10396 GTP-binding protein TrmE N-terminus DDU33_04060 PF02096 60Kd inner membrane protein DDU33_04060 PF14849 YidC periplasmic domain DDU33_04065 PF03061 Thioesterase superfamily DDU33_04070 PF02913 FAD linked oxidases, C-terminal domain DDU33_04070 PF01565 FAD binding domain DDU33_04070 PF13183 4Fe-4S dicluster domain DDU33_04075 PF00691 OmpA family DDU33_04075 PF01389 OmpA-like transmembrane domain DDU33_04080 PF00691 OmpA family DDU33_04080 PF01389 OmpA-like transmembrane domain DDU33_04085 PF17414 MatP C-terminal ribbon-helix-helix domain DDU33_04085 PF06303 MatP N-terminal domain DDU33_04090 PF13654 AAA domain DDU33_04090 PF05362 Lon protease (S16) C-terminal proteolytic domain DDU33_04095 PF07977 FabA-like domain DDU33_04120 PF17946 RecC C-terminal domain DDU33_04125 PF00675 Insulinase (Peptidase family M16) DDU33_04125 PF05193 Peptidase M16 inactive domain DDU33_04125 PF16187 Middle or third domain of peptidase_M16 DDU33_04130 PF00171 Aldehyde dehydrogenase family DDU33_04130 PF01619 Proline dehydrogenase DDU33_04130 PF14850 DNA-binding domain of Proline dehydrogenase DDU33_04130 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DDU33_04135 PF00474 Sodium:solute symporter family DDU33_04140 PF03222 Tryptophan/tyrosine permease family DDU33_04145 PF00684 DnaJ central domain DDU33_04145 PF01556 DnaJ C terminal domain DDU33_04145 PF00226 DnaJ domain DDU33_04150 PF00012 Hsp70 protein DDU33_04155 PF01431 Peptidase family M13 DDU33_04155 PF05649 Peptidase family M13 DDU33_04160 PF10571 Uncharacterised protein family UPF0547 DDU33_04170 PF03352 Methyladenine glycosylase DDU33_04180 PF02446 4-alpha-glucanotransferase DDU33_04185 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_04190 PF14785 Maltose transport system permease protein MalF P2 domain DDU33_04190 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_04195 PF01547 Bacterial extracellular solute-binding protein DDU33_04200 PF00005 ABC transporter DDU33_04200 PF17912 MalK OB fold domain DDU33_04205 PF02264 LamB porin DDU33_04210 PF07148 Maltose operon periplasmic protein precursor (MalM) DDU33_04220 PF00128 Alpha amylase, catalytic domain DDU33_04225 PF17874 MalT-like TPR region DDU33_04225 PF00196 Bacterial regulatory proteins, luxR family DDU33_04230 PF00343 Carbohydrate phosphorylase DDU33_04235 PF00762 Ferrochelatase DDU33_04240 PF00468 Ribosomal protein L34 DDU33_04245 PF00825 Ribonuclease P DDU33_04250 PF01809 Putative membrane protein insertion efficiency factor DDU33_04260 PF00892 EamA-like transporter family DDU33_04265 PF00892 EamA-like transporter family DDU33_04270 PF01016 Ribosomal L27 protein DDU33_04275 PF00829 Ribosomal prokaryotic L21 protein DDU33_04280 PF00348 Polyprenyl synthetase DDU33_04285 PF02677 Epoxyqueuosine reductase QueH DDU33_04290 PF00698 Acyl transferase domain DDU33_04300 PF05525 Branched-chain amino acid transport protein DDU33_04305 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DDU33_04305 PF06827 Zinc finger found in FPG and IleRS DDU33_04305 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DDU33_04310 PF00282 Pyridoxal-dependent decarboxylase conserved domain DDU33_04315 PF00202 Aminotransferase class-III DDU33_04320 PF00471 Ribosomal protein L33 DDU33_04325 PF00830 Ribosomal L28 family DDU33_04330 PF03033 Glycosyltransferase family 28 N-terminal domain DDU33_04330 PF04101 Glycosyltransferase family 28 C-terminal domain DDU33_04335 PF01225 Mur ligase family, catalytic domain DDU33_04335 PF08245 Mur ligase middle domain DDU33_04335 PF02875 Mur ligase family, glutamate ligase domain DDU33_04340 PF01820 D-ala D-ala ligase N-terminus DDU33_04340 PF07478 D-ala D-ala ligase C-terminus DDU33_04345 PF03799 Cell division protein FtsQ DDU33_04345 PF08478 POTRA domain, FtsQ-type DDU33_04350 PF02491 SHS2 domain inserted in FTSA DDU33_04355 PF12327 FtsZ family, C-terminal domain DDU33_04355 PF00091 Tubulin/FtsZ family, GTPase domain DDU33_04360 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DDU33_04365 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDU33_04370 PF00291 Pyridoxal-phosphate dependent enzyme DDU33_04370 PF00585 C-terminal regulatory domain of Threonine dehydratase DDU33_04375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDU33_04375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDU33_04375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDU33_04375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDU33_04380 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DDU33_04385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDU33_04385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDU33_04390 PF08274 PhnA Zinc-Ribbon DDU33_04390 PF03831 PhnA domain DDU33_04395 PF04393 Protein of unknown function (DUF535) DDU33_04400 PF02594 Uncharacterised ACR, YggU family COG1872 DDU33_04405 PF02325 YGGT family DDU33_04410 PF04320 Protein with unknown function (DUF469) DDU33_04415 PF02390 Putative methyltransferase DDU33_04420 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DDU33_04420 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DDU33_04425 PF02504 Fatty acid synthesis protein DDU33_04430 PF01783 Ribosomal L32p protein family DDU33_04435 PF02620 Large ribosomal RNA subunit accumulation protein YceD DDU33_04440 PF01578 Cytochrome C assembly protein DDU33_04445 PF03471 Transporter associated domain DDU33_04445 PF00571 CBS domain DDU33_04445 PF01595 Cyclin M transmembrane N-terminal domain DDU33_04450 PF00209 Sodium:neurotransmitter symporter family DDU33_04460 PF03458 UPF0126 domain DDU33_04470 PF07732 Multicopper oxidase DDU33_04475 PF00294 pfkB family carbohydrate kinase DDU33_04480 PF00251 Glycosyl hydrolases family 32 N-terminal domain DDU33_04480 PF08244 Glycosyl hydrolases family 32 C terminal DDU33_04485 PF13407 Periplasmic binding protein domain DDU33_04485 PF00356 Bacterial regulatory proteins, lacI family DDU33_04495 PF00881 Nitroreductase family DDU33_04510 PF00005 ABC transporter DDU33_04515 PF01116 Fructose-bisphosphate aldolase class-II DDU33_04520 PF00162 Phosphoglycerate kinase DDU33_04525 PF00939 Sodium:sulfate symporter transmembrane region DDU33_04530 PF03610 PTS system fructose IIA component DDU33_04530 PF03830 PTS system sorbose subfamily IIB component DDU33_04535 PF03609 PTS system sorbose-specific iic component DDU33_04540 PF03613 PTS system mannose/fructose/sorbose family IID component DDU33_04545 PF06173 Protein of unknown function (DUF986) DDU33_04550 PF13520 Amino acid permease DDU33_04560 PF00583 Acetyltransferase (GNAT) family DDU33_04565 PF00696 Amino acid kinase family DDU33_04570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDU33_04570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDU33_04575 PF08019 Phosphoethanolamine transferase EptA/EptB DDU33_04575 PF00884 Sulfatase DDU33_04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_04580 PF00512 His Kinase A (phospho-acceptor) domain DDU33_04580 PF08521 Two-component sensor kinase N-terminal DDU33_04585 PF00486 Transcriptional regulatory protein, C terminal DDU33_04585 PF00072 Response regulator receiver domain DDU33_04590 PF07681 DoxX DDU33_04595 PF03466 LysR substrate binding domain DDU33_04595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_04600 PF00156 Phosphoribosyl transferase domain DDU33_04605 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DDU33_04610 PF00364 Biotin-requiring enzyme DDU33_04610 PF00682 HMGL-like DDU33_04610 PF02436 Conserved carboxylase domain DDU33_04615 PF04277 Oxaloacetate decarboxylase, gamma chain DDU33_04620 PF02080 TrkA-C domain DDU33_04620 PF03600 Citrate transporter DDU33_04625 PF14743 DNA ligase OB-like domain DDU33_04625 PF01068 ATP dependent DNA ligase domain DDU33_04660 PF00308 Bacterial dnaA protein DDU33_04665 PF00005 ABC transporter DDU33_04670 PF03379 CcmB protein DDU33_04675 PF01578 Cytochrome C assembly protein DDU33_04680 PF04995 Heme exporter protein D (CcmD) DDU33_04685 PF03100 CcmE DDU33_04690 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DDU33_04690 PF01578 Cytochrome C assembly protein DDU33_04695 PF00543 Nitrogen regulatory protein P-II DDU33_04700 PF00909 Ammonium Transporter Family DDU33_04720 PF01266 FAD dependent oxidoreductase DDU33_04725 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDU33_04725 PF01464 Transglycosylase SLT domain DDU33_04730 PF13419 Haloacid dehalogenase-like hydrolase DDU33_04735 PF03466 LysR substrate binding domain DDU33_04735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_04740 PF05191 Adenylate kinase, active site lid DDU33_04745 PF01063 Amino-transferase class IV DDU33_04750 PF00425 chorismate binding enzyme DDU33_04760 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDU33_04790 PF02463 RecF/RecN/SMC N terminal domain DDU33_04795 PF00712 DNA polymerase III beta subunit, N-terminal domain DDU33_04795 PF02767 DNA polymerase III beta subunit, central domain DDU33_04795 PF02768 DNA polymerase III beta subunit, C-terminal domain DDU33_04800 PF11638 DnaA N-terminal domain DDU33_04800 PF08299 Bacterial dnaA protein helix-turn-helix DDU33_04800 PF00308 Bacterial dnaA protein DDU33_04805 PF03462 PCRF domain DDU33_04805 PF00472 RF-1 domain DDU33_04815 PF13847 Methyltransferase domain DDU33_04815 PF17827 PrmC N-terminal domain DDU33_04820 PF13369 Transglutaminase-like superfamily DDU33_04825 PF00793 DAHP synthetase I family DDU33_04830 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDU33_04830 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDU33_04840 PF00293 NUDIX domain DDU33_04845 PF01709 Transcriptional regulator DDU33_04855 PF02075 Crossover junction endodeoxyribonuclease RuvC DDU33_04860 PF00708 Acylphosphatase DDU33_04865 PF01207 Dihydrouridine synthase (Dus) DDU33_04875 PF02867 Ribonucleotide reductase, barrel domain DDU33_04875 PF03477 ATP cone domain DDU33_04875 PF00317 Ribonucleotide reductase, all-alpha domain DDU33_04880 PF04973 Nicotinamide mononucleotide transporter DDU33_04885 PF06418 CTP synthase N-terminus DDU33_04885 PF00117 Glutamine amidotransferase class-I DDU33_04890 PF03916 Polysulphide reductase, NrfD DDU33_04895 PF13247 4Fe-4S dicluster domain DDU33_04905 PF02335 Cytochrome c552 DDU33_04910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDU33_04910 PF00205 Thiamine pyrophosphate enzyme, central domain DDU33_04910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDU33_04925 PF04269 Protein of unknown function, DUF440 DDU33_04930 PF03848 Tellurite resistance protein TehB DDU33_04930 PF09313 Domain of unknown function (DUF1971) DDU33_04935 PF05258 Dna[CI] antecedent, DciA DDU33_04945 PF02554 Carbon starvation protein CstA DDU33_04950 PF02646 RmuC family DDU33_04955 PF00117 Glutamine amidotransferase class-I DDU33_04960 PF12832 MFS_1 like family DDU33_04965 PF03807 NADP oxidoreductase coenzyme F420-dependent DDU33_04965 PF14748 Pyrroline-5-carboxylate reductase dimerisation DDU33_04970 PF16036 Chalcone isomerase-like DDU33_04975 PF04325 Protein of unknown function (DUF465) DDU33_04985 PF02684 Lipid-A-disaccharide synthetase DDU33_04990 PF08496 Peptidase family S49 N-terminal DDU33_04990 PF01343 Peptidase family S49 DDU33_04995 PF03466 LysR substrate binding domain DDU33_04995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_05000 PF01176 Translation initiation factor 1A / IF-1 DDU33_05005 PF10144 Bacterial virulence factor haemolysin DDU33_05010 PF18429 Domain of unknown function (DUF5609) DDU33_05015 PF04461 Protein of unknown function (DUF520) DDU33_05020 PF08338 Domain of unknown function (DUF1731) DDU33_05020 PF01370 NAD dependent epimerase/dehydratase family DDU33_05025 PF01316 Arginine repressor, DNA binding domain DDU33_05025 PF02863 Arginine repressor, C-terminal domain DDU33_05030 PF00056 lactate/malate dehydrogenase, NAD binding domain DDU33_05030 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DDU33_05040 PF01161 Phosphatidylethanolamine-binding protein DDU33_05045 PF00005 ABC transporter DDU33_05050 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDU33_05055 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_05060 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_05065 PF00313 'Cold-shock' DNA-binding domain DDU33_05070 PF04352 ProQ/FINO family DDU33_05075 PF11818 C-terminal domain of tail specific protease (DUF3340) DDU33_05075 PF03572 Peptidase family S41 DDU33_05075 PF00595 PDZ domain DDU33_05075 PF17804 Tail specific protease N-terminal domain DDU33_05080 PF03734 L,D-transpeptidase catalytic domain DDU33_05085 PF05951 Bacterial protein of unknown function (DUF882) DDU33_05090 PF00753 Metallo-beta-lactamase superfamily DDU33_05095 PF00206 Lyase DDU33_05095 PF14698 Argininosuccinate lyase C-terminal DDU33_05100 PF17674 HHH domain DDU33_05100 PF00575 S1 RNA binding domain DDU33_05100 PF16921 Tex protein YqgF-like domain DDU33_05100 PF09371 Tex-like protein N-terminal domain DDU33_05110 PF04055 Radical SAM superfamily DDU33_05115 PF01018 GTP1/OBG DDU33_05115 PF01926 50S ribosome-binding GTPase DDU33_05120 PF05746 DALR anticodon binding domain DDU33_05120 PF00750 tRNA synthetases class I (R) DDU33_05120 PF03485 Arginyl tRNA synthetase N terminal domain DDU33_05125 PF06185 YecM protein DDU33_05130 PF05433 Glycine zipper 2TM domain DDU33_05140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDU33_05145 PF01184 GPR1/FUN34/yaaH family DDU33_05150 PF13416 Bacterial extracellular solute-binding protein DDU33_05155 PF00005 ABC transporter DDU33_05165 PF05658 Head domain of trimeric autotransporter adhesin DDU33_05165 PF05662 Coiled stalk of trimeric autotransporter adhesin DDU33_05165 PF05658 Head domain of trimeric autotransporter adhesin DDU33_05165 PF13018 Extended Signal Peptide of Type V secretion system DDU33_05165 PF03895 YadA-like membrane anchor domain DDU33_05165 PF03895 YadA-like membrane anchor domain DDU33_05165 PF13018 Extended Signal Peptide of Type V secretion system DDU33_05165 PF05662 Coiled stalk of trimeric autotransporter adhesin DDU33_05170 PF01699 Sodium/calcium exchanger protein DDU33_05175 PF11412 Disulphide bond corrector protein DsbC DDU33_05175 PF02683 Cytochrome C biogenesis protein transmembrane region DDU33_05175 PF13098 Thioredoxin-like domain DDU33_05180 PF04315 Elongation factor P hydroxylase DDU33_05185 PF01168 Alanine racemase, N-terminal domain DDU33_05200 PF00072 Response regulator receiver domain DDU33_05200 PF00486 Transcriptional regulatory protein, C terminal DDU33_05205 PF00149 Calcineurin-like phosphoesterase DDU33_05210 PF13521 AAA domain DDU33_05210 PF01467 Cytidylyltransferase-like DDU33_05215 PF01687 Riboflavin kinase DDU33_05215 PF06574 FAD synthetase DDU33_05220 PF06827 Zinc finger found in FPG and IleRS DDU33_05220 PF00133 tRNA synthetases class I (I, L, M and V) DDU33_05220 PF08264 Anticodon-binding domain of tRNA DDU33_05225 PF13091 PLD-like domain DDU33_05230 PF00588 SpoU rRNA Methylase family DDU33_05230 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDU33_05235 PF10150 Ribonuclease E/G family DDU33_05235 PF12111 Polyribonucleotide phosphorylase C terminal DDU33_05235 PF00575 S1 RNA binding domain DDU33_05240 PF01297 Zinc-uptake complex component A periplasmic DDU33_05245 PF03603 DNA polymerase III psi subunit DDU33_05250 PF08468 Methyltransferase small domain N-terminal DDU33_05250 PF05175 Methyltransferase small domain DDU33_05255 PF00440 Bacterial regulatory proteins, tetR family DDU33_05260 PF03466 LysR substrate binding domain DDU33_05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_05265 PF00462 Glutaredoxin DDU33_05265 PF08534 Redoxin DDU33_05270 PF08245 Mur ligase middle domain DDU33_05270 PF02875 Mur ligase family, glutamate ligase domain DDU33_05270 PF01225 Mur ligase family, catalytic domain DDU33_05275 PF00919 Uncharacterized protein family UPF0004 DDU33_05275 PF01938 TRAM domain DDU33_05275 PF04055 Radical SAM superfamily DDU33_05280 PF00557 Metallopeptidase family M24 DDU33_05285 PF02592 Putative vitamin uptake transporter DDU33_05290 PF00923 Transaldolase/Fructose-6-phosphate aldolase DDU33_05320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDU33_05330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDU33_05335 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_05340 PF12911 N-terminal TM domain of oligopeptide transport permease C DDU33_05340 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_05345 PF00005 ABC transporter DDU33_05345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDU33_05350 PF00005 ABC transporter DDU33_05350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDU33_05355 PF00118 TCP-1/cpn60 chaperonin family DDU33_05360 PF00166 Chaperonin 10 Kd subunit DDU33_05365 PF01235 Sodium:alanine symporter family DDU33_05370 PF02887 Pyruvate kinase, alpha/beta domain DDU33_05370 PF00224 Pyruvate kinase, barrel domain DDU33_05375 PF00300 Histidine phosphatase superfamily (branch 1) DDU33_05380 PF01207 Dihydrouridine synthase (Dus) DDU33_05385 PF02954 Bacterial regulatory protein, Fis family DDU33_05390 PF07715 TonB-dependent Receptor Plug Domain DDU33_05390 PF00593 TonB dependent receptor DDU33_05405 PF08267 Cobalamin-independent synthase, N-terminal domain DDU33_05405 PF01717 Cobalamin-independent synthase, Catalytic domain DDU33_05415 PF02635 DsrE/DsrF-like family DDU33_05420 PF00860 Permease family DDU33_05430 PF04073 Aminoacyl-tRNA editing domain DDU33_05440 PF03129 Anticodon binding domain DDU33_05440 PF13393 Histidyl-tRNA synthetase DDU33_05445 PF04551 GcpE protein DDU33_05450 PF13464 Domain of unknown function (DUF4115) DDU33_05455 PF01740 STAS domain DDU33_05455 PF00916 Sulfate permease family DDU33_05460 PF03922 OmpW family DDU33_05465 PF17871 AAA lid domain DDU33_05465 PF07724 AAA domain (Cdc48 subfamily) DDU33_05465 PF10431 C-terminal, D2-small domain, of ClpB protein DDU33_05465 PF00004 ATPase family associated with various cellular activities (AAA) DDU33_05465 PF02861 Clp amino terminal domain, pathogenicity island component DDU33_05485 PF10415 Fumarase C C-terminus DDU33_05485 PF00206 Lyase DDU33_05495 PF00586 AIR synthase related protein, N-terminal domain DDU33_05495 PF02769 AIR synthase related protein, C-terminal domain DDU33_05500 PF06508 Queuosine biosynthesis protein QueC DDU33_05505 PF01242 6-pyruvoyl tetrahydropterin synthase DDU33_05510 PF04055 Radical SAM superfamily DDU33_05515 PF01106 NifU-like domain DDU33_05515 PF01521 Iron-sulphur cluster biosynthesis DDU33_05520 PF11973 NQRA C-terminal domain DDU33_05520 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DDU33_05525 PF03116 NQR2, RnfD, RnfE family DDU33_05530 PF04205 FMN-binding domain DDU33_05535 PF02508 Rnf-Nqr subunit, membrane protein DDU33_05540 PF02508 Rnf-Nqr subunit, membrane protein DDU33_05545 PF00970 Oxidoreductase FAD-binding domain DDU33_05545 PF00111 2Fe-2S iron-sulfur cluster binding domain DDU33_05545 PF00175 Oxidoreductase NAD-binding domain DDU33_05550 PF02424 ApbE family DDU33_05555 PF04400 (Na+)-NQR maturation NqrM DDU33_05565 PF00588 SpoU rRNA Methylase family DDU33_05570 PF03350 Uncharacterized protein family, UPF0114 DDU33_05575 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDU33_05575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDU33_05585 PF00425 chorismate binding enzyme DDU33_05585 PF04715 Anthranilate synthase component I, N terminal region DDU33_05590 PF00117 Glutamine amidotransferase class-I DDU33_05595 PF02885 Glycosyl transferase family, helical bundle domain DDU33_05595 PF00591 Glycosyl transferase family, a/b domain DDU33_05600 PF08241 Methyltransferase domain DDU33_05620 PF12838 4Fe-4S dicluster domain DDU33_05620 PF00037 4Fe-4S binding domain DDU33_05625 PF04381 Putative exonuclease, RdgC DDU33_05630 PF03222 Tryptophan/tyrosine permease family DDU33_05635 PF03222 Tryptophan/tyrosine permease family DDU33_05640 PF13419 Haloacid dehalogenase-like hydrolase DDU33_05645 PF00929 Exonuclease DDU33_05650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDU33_05660 PF11739 Dicarboxylate transport DDU33_05670 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DDU33_05675 PF01743 Poly A polymerase head domain DDU33_05675 PF12626 Polymerase A arginine-rich C-terminus DDU33_05675 PF12627 Probable RNA and SrmB- binding site of polymerase A DDU33_05680 PF01258 Prokaryotic dksA/traR C4-type zinc finger DDU33_05700 PF00152 tRNA synthetases class II (D, K and N) DDU33_05700 PF02938 GAD domain DDU33_05700 PF01336 OB-fold nucleic acid binding domain DDU33_05705 PF02545 Maf-like protein DDU33_05725 PF13936 Helix-turn-helix domain DDU33_05725 PF00665 Integrase core domain DDU33_05735 PF09704 CRISPR-associated protein (Cas_Cas5) DDU33_05760 PF01867 CRISPR associated protein Cas1 DDU33_05765 PF09827 CRISPR associated protein Cas2 DDU33_05770 PF00800 Prephenate dehydratase DDU33_05770 PF01817 Chorismate mutase type II DDU33_05775 PF01432 Peptidase family M3 DDU33_05780 PF04055 Radical SAM superfamily DDU33_05785 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DDU33_05790 PF02901 Pyruvate formate lyase-like DDU33_05790 PF01228 Glycine radical DDU33_05795 PF01226 Formate/nitrite transporter DDU33_05810 PF01435 Peptidase family M48 DDU33_05815 PF00817 impB/mucB/samB family DDU33_05815 PF11799 impB/mucB/samB family C-terminal domain DDU33_05815 PF11798 IMS family HHH motif DDU33_05820 PF03956 Lysine exporter LysO DDU33_05825 PF02080 TrkA-C domain DDU33_05825 PF06826 Predicted Permease Membrane Region DDU33_05830 PF00425 chorismate binding enzyme DDU33_05835 PF00155 Aminotransferase class I and II DDU33_05840 PF00892 EamA-like transporter family DDU33_05845 PF00892 EamA-like transporter family DDU33_05850 PF01810 LysE type translocator DDU33_05855 PF17764 3′ DNA-binding domain (3′BD) DDU33_05855 PF00271 Helicase conserved C-terminal domain DDU33_05855 PF18074 Primosomal protein N C-terminal domain DDU33_05855 PF00270 DEAD/DEAH box helicase DDU33_05855 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DDU33_05860 PF07715 TonB-dependent Receptor Plug Domain DDU33_05860 PF00593 TonB dependent receptor DDU33_05865 PF00665 Integrase core domain DDU33_05865 PF13936 Helix-turn-helix domain DDU33_05870 PF01032 FecCD transport family DDU33_05875 PF01497 Periplasmic binding protein DDU33_05880 PF00005 ABC transporter DDU33_05885 PF02698 DUF218 domain DDU33_05890 PF04230 Polysaccharide pyruvyl transferase DDU33_05900 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) DDU33_05910 PF00535 Glycosyl transferase family 2 DDU33_05915 PF00535 Glycosyl transferase family 2 DDU33_05920 PF01625 Peptide methionine sulfoxide reductase DDU33_05920 PF08534 Redoxin DDU33_05920 PF01641 SelR domain DDU33_05930 PF07662 Na+ dependent nucleoside transporter C-terminus DDU33_05930 PF01773 Na+ dependent nucleoside transporter N-terminus DDU33_05930 PF07670 Nucleoside recognition DDU33_05935 PF01791 DeoC/LacD family aldolase DDU33_05945 PF01048 Phosphorylase superfamily DDU33_05950 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDU33_05955 PF00696 Amino acid kinase family DDU33_05960 PF00202 Aminotransferase class-III DDU33_05965 PF15401 Tryptophan-ring motif of head of Trimeric autotransporter adhesin DDU33_05965 PF05662 Coiled stalk of trimeric autotransporter adhesin DDU33_05965 PF13018 Extended Signal Peptide of Type V secretion system DDU33_05965 PF03895 YadA-like membrane anchor domain DDU33_05970 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DDU33_05980 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DDU33_05980 PF01433 Peptidase family M1 domain DDU33_05980 PF11940 Domain of unknown function (DUF3458) Ig-like fold DDU33_05985 PF07690 Major Facilitator Superfamily DDU33_05990 PF17757 UvrB interaction domain DDU33_05990 PF00270 DEAD/DEAH box helicase DDU33_05990 PF03461 TRCF domain DDU33_05990 PF00271 Helicase conserved C-terminal domain DDU33_05990 PF02559 CarD-like/TRCF domain DDU33_06015 PF17274 Family of unknown function (DUF5339) DDU33_06020 PF01654 Cytochrome bd terminal oxidase subunit I DDU33_06025 PF02322 Cytochrome bd terminal oxidase subunit II DDU33_06045 PF03061 Thioesterase superfamily DDU33_06050 PF01618 MotA/TolQ/ExbB proton channel family DDU33_06055 PF02472 Biopolymer transport protein ExbD/TolR DDU33_06065 PF07676 WD40-like Beta Propeller Repeat DDU33_06065 PF04052 TolB amino-terminal domain DDU33_06070 PF00691 OmpA family DDU33_06075 PF13520 Amino acid permease DDU33_06085 PF01546 Peptidase family M20/M25/M40 DDU33_06085 PF07687 Peptidase dimerisation domain DDU33_06090 PF00565 Staphylococcal nuclease homologue DDU33_06095 PF00266 Aminotransferase class-V DDU33_06100 PF00365 Phosphofructokinase DDU33_06105 PF14256 YwiC-like protein DDU33_06110 PF01594 AI-2E family transporter DDU33_06115 PF02789 Cytosol aminopeptidase family, N-terminal domain DDU33_06115 PF00883 Cytosol aminopeptidase family, catalytic domain DDU33_06120 PF03739 Lipopolysaccharide export system permease LptF/LptG DDU33_06125 PF03739 Lipopolysaccharide export system permease LptF/LptG DDU33_06130 PF01513 ATP-NAD kinase DDU33_06135 PF00464 Serine hydroxymethyltransferase DDU33_06140 PF00551 Formyl transferase DDU33_06145 PF00486 Transcriptional regulatory protein, C terminal DDU33_06145 PF00072 Response regulator receiver domain DDU33_06150 PF00512 His Kinase A (phospho-acceptor) domain DDU33_06150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_06150 PF08521 Two-component sensor kinase N-terminal DDU33_06155 PF05496 Holliday junction DNA helicase RuvB P-loop domain DDU33_06155 PF17864 RuvB AAA lid domain DDU33_06155 PF05491 RuvB C-terminal winged helix domain DDU33_06160 PF01330 RuvA N terminal domain DDU33_06160 PF07499 RuvA, C-terminal domain DDU33_06165 PF00571 CBS domain DDU33_06165 PF01595 Cyclin M transmembrane N-terminal domain DDU33_06165 PF03471 Transporter associated domain DDU33_06170 PF00849 RNA pseudouridylate synthase DDU33_06175 PF00300 Histidine phosphatase superfamily (branch 1) DDU33_06180 PF01810 LysE type translocator DDU33_06185 PF04608 Phosphatidylglycerophosphatase A DDU33_06190 PF02769 AIR synthase related protein, C-terminal domain DDU33_06190 PF00586 AIR synthase related protein, N-terminal domain DDU33_06195 PF01029 NusB family DDU33_06200 PF03958 Bacterial type II/III secretion system short domain DDU33_06200 PF00263 Bacterial type II and III secretion system protein DDU33_06220 PF11104 Type IV pilus assembly protein PilM; DDU33_06225 PF00905 Penicillin binding protein transpeptidase domain DDU33_06225 PF17092 Penicillin-binding protein OB-like domain DDU33_06225 PF00912 Transglycosylase DDU33_06230 PF01202 Shikimate kinase DDU33_06235 PF01761 3-dehydroquinate synthase DDU33_06240 PF02086 D12 class N6 adenine-specific DNA methyltransferase DDU33_06245 PF01206 Sulfurtransferase TusA DDU33_06250 PF04143 Sulphur transport DDU33_06255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDU33_06255 PF03129 Anticodon binding domain DDU33_06255 PF02824 TGS domain DDU33_06255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDU33_06260 PF01255 Putative undecaprenyl diphosphate synthase DDU33_06270 PF02163 Peptidase family M50 DDU33_06275 PF01103 Surface antigen DDU33_06275 PF07244 Surface antigen variable number repeat DDU33_06285 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DDU33_06285 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_06290 PF07977 FabA-like domain DDU33_06295 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_06295 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DDU33_06310 PF02811 PHP domain DDU33_06310 PF01336 OB-fold nucleic acid binding domain DDU33_06310 PF14579 Helix-hairpin-helix motif DDU33_06310 PF07733 Bacterial DNA polymerase III alpha NTPase domain DDU33_06310 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DDU33_06325 PF02785 Biotin carboxylase C-terminal domain DDU33_06325 PF00289 Biotin carboxylase, N-terminal domain DDU33_06325 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDU33_06330 PF01370 NAD dependent epimerase/dehydratase family DDU33_06330 PF02222 ATP-grasp domain DDU33_06335 PF00593 TonB dependent receptor DDU33_06335 PF07715 TonB-dependent Receptor Plug Domain DDU33_06345 PF01032 FecCD transport family DDU33_06350 PF00005 ABC transporter DDU33_06380 PF08676 MutL C terminal dimerisation domain DDU33_06380 PF01119 DNA mismatch repair protein, C-terminal domain DDU33_06385 PF00145 C-5 cytosine-specific DNA methylase DDU33_06390 PF02607 B12 binding domain DDU33_06390 PF00809 Pterin binding enzyme DDU33_06390 PF02965 Vitamin B12 dependent methionine synthase, activation domain DDU33_06390 PF02574 Homocysteine S-methyltransferase DDU33_06390 PF02310 B12 binding domain DDU33_06395 PF01553 Acyltransferase DDU33_06400 PF00717 Peptidase S24-like DDU33_06400 PF01726 LexA DNA binding domain DDU33_06405 PF02976 DNA mismatch repair enzyme MutH DDU33_06410 PF03741 Integral membrane protein TerC family DDU33_06415 PF00933 Glycosyl hydrolase family 3 N terminal domain DDU33_06420 PF05958 tRNA (Uracil-5-)-methyltransferase DDU33_06425 PF03952 Enolase, N-terminal domain DDU33_06425 PF00113 Enolase, C-terminal TIM barrel domain DDU33_06430 PF10008 Uncharacterized protein conserved in bacteria (DUF2251) DDU33_06435 PF16124 RecQ zinc-binding DDU33_06435 PF00570 HRDC domain DDU33_06435 PF00270 DEAD/DEAH box helicase DDU33_06435 PF09382 RQC domain DDU33_06435 PF00271 Helicase conserved C-terminal domain DDU33_06440 PF01491 Frataxin-like domain DDU33_06445 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) DDU33_06455 PF00814 Glycoprotease family DDU33_06460 PF13525 Outer membrane lipoprotein DDU33_06465 PF00849 RNA pseudouridylate synthase DDU33_06465 PF01479 S4 domain DDU33_06470 PF02699 Preprotein translocase subunit DDU33_06475 PF13721 SecD export protein N-terminal TM region DDU33_06475 PF02355 Protein export membrane protein DDU33_06475 PF07549 SecD/SecF GG Motif DDU33_06480 PF07549 SecD/SecF GG Motif DDU33_06480 PF02355 Protein export membrane protein DDU33_06485 PF00210 Ferritin-like domain DDU33_06490 PF00210 Ferritin-like domain DDU33_06495 PF00860 Permease family DDU33_06500 PF00149 Calcineurin-like phosphoesterase DDU33_06505 PF06628 Catalase-related immune-responsive DDU33_06505 PF00199 Catalase DDU33_06510 PF01053 Cys/Met metabolism PLP-dependent enzyme DDU33_06515 PF02600 Disulfide bond formation protein DsbB DDU33_06520 PF06450 Bacterial Na+/H+ antiporter B (NhaB) DDU33_06525 PF07840 FadR C-terminal domain DDU33_06525 PF00392 Bacterial regulatory proteins, gntR family DDU33_06565 PF07859 alpha/beta hydrolase fold DDU33_06570 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_06570 PF12464 Maltose acetyltransferase DDU33_06575 PF01638 HxlR-like helix-turn-helix DDU33_06580 PF00753 Metallo-beta-lactamase superfamily DDU33_06585 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDU33_06595 PF03466 LysR substrate binding domain DDU33_06595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_06605 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_06605 PF12464 Maltose acetyltransferase DDU33_06610 PF01638 HxlR-like helix-turn-helix DDU33_06630 PF03466 LysR substrate binding domain DDU33_06630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_06635 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DDU33_06645 PF01197 Ribosomal protein L31 DDU33_06650 PF02779 Transketolase, pyrimidine binding domain DDU33_06650 PF00456 Transketolase, thiamine diphosphate binding domain DDU33_06650 PF02780 Transketolase, C-terminal domain DDU33_06655 PF00209 Sodium:neurotransmitter symporter family DDU33_06675 PF03668 P-loop ATPase protein family DDU33_06680 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDU33_06685 PF00005 ABC transporter DDU33_06685 PF12399 Branched-chain amino acid ATP-binding cassette transporter DDU33_06690 PF03968 OstA-like protein DDU33_06695 PF06835 Lipopolysaccharide-assembly, LptC-related DDU33_06700 PF00311 Phosphoenolpyruvate carboxylase DDU33_06705 PF04536 TPM domain DDU33_06715 PF04011 LemA family DDU33_06720 PF01546 Peptidase family M20/M25/M40 DDU33_06720 PF07687 Peptidase dimerisation domain DDU33_06725 PF00156 Phosphoribosyl transferase domain DDU33_06730 PF00625 Guanylate kinase DDU33_06735 PF02321 Outer membrane efflux protein DDU33_06740 PF03658 RnfH family Ubiquitin DDU33_06745 PF03459 TOBE domain DDU33_06745 PF00005 ABC transporter DDU33_06750 PF00899 ThiF family DDU33_06765 PF00465 Iron-containing alcohol dehydrogenase DDU33_06765 PF00171 Aldehyde dehydrogenase family DDU33_06770 PF08264 Anticodon-binding domain of tRNA DDU33_06770 PF09334 tRNA synthetases class I (M) DDU33_06770 PF01588 Putative tRNA binding domain DDU33_06775 PF00334 Nucleoside diphosphate kinase DDU33_06780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDU33_06780 PF00381 PTS HPr component phosphorylation site DDU33_06785 PF00294 pfkB family carbohydrate kinase DDU33_06790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDU33_06795 PF01985 CRS1 / YhbY (CRM) domain DDU33_06800 PF01569 PAP2 superfamily DDU33_06805 PF00480 ROK family DDU33_06810 PF16123 Hydroxyacylglutathione hydrolase C-terminus DDU33_06810 PF00753 Metallo-beta-lactamase superfamily DDU33_06815 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DDU33_06815 PF03900 Porphobilinogen deaminase, C-terminal domain DDU33_06825 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DDU33_06830 PF07219 HemY protein N-terminus DDU33_06835 PF03652 Holliday junction resolvase DDU33_06840 PF01510 N-acetylmuramoyl-L-alanine amidase DDU33_06845 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DDU33_06850 PF00156 Phosphoribosyl transferase domain DDU33_06855 PF13936 Helix-turn-helix domain DDU33_06855 PF00665 Integrase core domain DDU33_06860 PF01717 Cobalamin-independent synthase, Catalytic domain DDU33_06865 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_06875 PF01061 ABC-2 type transporter DDU33_06880 PF00005 ABC transporter DDU33_06885 PF12169 DNA polymerase III subunits gamma and tau domain III DDU33_06885 PF12170 DNA polymerase III tau subunit V interacting with alpha DDU33_06890 PF00156 Phosphoribosyl transferase domain DDU33_06895 PF04358 DsrC like protein DDU33_06900 PF01027 Inhibitor of apoptosis-promoting Bax1 DDU33_06905 PF01066 CDP-alcohol phosphatidyltransferase DDU33_06910 PF02151 UvrB/uvrC motif DDU33_06910 PF01541 GIY-YIG catalytic domain DDU33_06910 PF08459 UvrC Helix-hairpin-helix N-terminal DDU33_06915 PF13378 Enolase C-terminal domain-like DDU33_06920 PF01479 S4 domain DDU33_06920 PF00849 RNA pseudouridylate synthase DDU33_06925 PF07690 Major Facilitator Superfamily DDU33_06930 PF00521 DNA gyrase/topoisomerase IV, subunit A DDU33_06930 PF03989 DNA gyrase C-terminal domain, beta-propeller DDU33_06935 PF00860 Permease family DDU33_06940 PF00085 Thioredoxin DDU33_06950 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DDU33_06950 PF13288 DXP reductoisomerase C-terminal domain DDU33_06950 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DDU33_06960 PF00453 Ribosomal protein L20 DDU33_06965 PF01632 Ribosomal protein L35 DDU33_06970 PF05198 Translation initiation factor IF-3, N-terminal domain DDU33_06970 PF00707 Translation initiation factor IF-3, C-terminal domain DDU33_06975 PF01554 MatE DDU33_06980 PF13361 UvrD-like helicase C-terminal domain DDU33_06980 PF12705 PD-(D/E)XK nuclease superfamily DDU33_06980 PF00580 UvrD/REP helicase N-terminal domain DDU33_06990 PF07664 Ferrous iron transport protein B C terminus DDU33_06990 PF02421 Ferrous iron transport protein B DDU33_06990 PF07670 Nucleoside recognition DDU33_07000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDU33_07000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDU33_07005 PF02566 OsmC-like protein DDU33_07010 PF12833 Helix-turn-helix domain DDU33_07010 PF06719 AraC-type transcriptional regulator N-terminus DDU33_07015 PF02190 ATP-dependent protease La (LON) substrate-binding domain DDU33_07015 PF00004 ATPase family associated with various cellular activities (AAA) DDU33_07015 PF05362 Lon protease (S16) C-terminal proteolytic domain DDU33_07020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDU33_07020 PF01872 RibD C-terminal domain DDU33_07025 PF00677 Lumazine binding domain DDU33_07030 PF00925 GTP cyclohydrolase II DDU33_07030 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DDU33_07035 PF00885 6,7-dimethyl-8-ribityllumazine synthase DDU33_07055 PF01042 Endoribonuclease L-PSP DDU33_07060 PF04245 37-kD nucleoid-associated bacterial protein DDU33_07065 PF04355 SmpA / OmlA family DDU33_07070 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DDU33_07070 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DDU33_07075 PF02824 TGS domain DDU33_07075 PF04607 Region found in RelA / SpoT proteins DDU33_07075 PF13291 ACT domain DDU33_07080 PF00300 Histidine phosphatase superfamily (branch 1) DDU33_07085 PF01551 Peptidase family M23 DDU33_07090 PF04748 Divergent polysaccharide deacetylase DDU33_07095 PF17243 POTRA domain TamA domain 1 DDU33_07095 PF01103 Surface antigen DDU33_07100 PF04357 TamB, inner membrane protein subunit of TAM complex DDU33_07105 PF00005 ABC transporter DDU33_07105 PF00664 ABC transporter transmembrane region DDU33_07115 PF13193 AMP-binding enzyme C-terminal domain DDU33_07115 PF00501 AMP-binding enzyme DDU33_07125 PF03888 MucB/RseB N-terminal domain DDU33_07125 PF17188 MucB/RseB C-terminal domain DDU33_07130 PF03873 Anti sigma-E protein RseA, C-terminal domain DDU33_07130 PF03872 Anti sigma-E protein RseA, N-terminal domain DDU33_07135 PF08281 Sigma-70, region 4 DDU33_07135 PF04542 Sigma-70 region 2 DDU33_07140 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDU33_07140 PF00588 SpoU rRNA Methylase family DDU33_07145 PF02773 S-adenosylmethionine synthetase, C-terminal domain DDU33_07145 PF02772 S-adenosylmethionine synthetase, central domain DDU33_07145 PF00438 S-adenosylmethionine synthetase, N-terminal domain DDU33_07150 PF05099 Tellurite resistance protein TerB DDU33_07150 PF00226 DnaJ domain DDU33_07155 PF01207 Dihydrouridine synthase (Dus) DDU33_07160 PF05128 Domain of unknown function (DUF697) DDU33_07165 PF07715 TonB-dependent Receptor Plug Domain DDU33_07165 PF00593 TonB dependent receptor DDU33_07165 PF04886 PT repeat DDU33_07170 PF02589 LUD domain DDU33_07175 PF02589 LUD domain DDU33_07175 PF13183 4Fe-4S dicluster domain DDU33_07175 PF11870 Domain of unknown function (DUF3390) DDU33_07180 PF02754 Cysteine-rich domain DDU33_07185 PF02652 L-lactate permease DDU33_07195 PF06969 HemN C-terminal domain DDU33_07195 PF04055 Radical SAM superfamily DDU33_07200 PF00578 AhpC/TSA family DDU33_07210 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DDU33_07210 PF14489 QueF-like protein DDU33_07215 PF00149 Calcineurin-like phosphoesterase DDU33_07215 PF02872 5'-nucleotidase, C-terminal domain DDU33_07220 PF01219 Prokaryotic diacylglycerol kinase DDU33_07225 PF00375 Sodium:dicarboxylate symporter family DDU33_07230 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DDU33_07230 PF01266 FAD dependent oxidoreductase DDU33_07255 PF08502 LeuA allosteric (dimerisation) domain DDU33_07255 PF00682 HMGL-like DDU33_07265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDU33_07270 PF02817 e3 binding domain DDU33_07270 PF00364 Biotin-requiring enzyme DDU33_07270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDU33_07275 PF02779 Transketolase, pyrimidine binding domain DDU33_07275 PF16078 2-oxoglutarate dehydrogenase N-terminus DDU33_07275 PF16870 2-oxoglutarate dehydrogenase C-terminal DDU33_07275 PF00676 Dehydrogenase E1 component DDU33_07280 PF17287 POTRA domain DDU33_07280 PF08479 POTRA domain, ShlB-type DDU33_07280 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DDU33_07285 PF13018 Extended Signal Peptide of Type V secretion system DDU33_07285 PF13018 Extended Signal Peptide of Type V secretion system DDU33_07285 PF13332 Hemagglutinin repeat DDU33_07285 PF05860 haemagglutination activity domain DDU33_07285 PF05860 haemagglutination activity domain DDU33_07285 PF04829 Pre-toxin domain with VENN motif DDU33_07285 PF13332 Hemagglutinin repeat DDU33_07285 PF04829 Pre-toxin domain with VENN motif DDU33_07295 PF05594 Haemagluttinin repeat DDU33_07295 PF13332 Hemagglutinin repeat DDU33_07295 PF04829 Pre-toxin domain with VENN motif DDU33_07295 PF14436 Bacterial EndoU nuclease DDU33_07295 PF05860 haemagglutination activity domain DDU33_07310 PF00005 ABC transporter DDU33_07315 PF04225 Opacity-associated protein A LysM-like domain DDU33_07315 PF01551 Peptidase family M23 DDU33_07320 PF10411 Disulfide bond isomerase protein N-terminus DDU33_07320 PF13098 Thioredoxin-like domain DDU33_07325 PF01368 DHH family DDU33_07325 PF17768 RecJ OB domain DDU33_07325 PF02272 DHHA1 domain DDU33_07330 PF01389 OmpA-like transmembrane domain DDU33_07330 PF00691 OmpA family DDU33_07340 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DDU33_07340 PF00672 HAMP domain DDU33_07340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_07340 PF07730 Histidine kinase DDU33_07350 PF00005 ABC transporter DDU33_07350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDU33_07355 PF00005 ABC transporter DDU33_07355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDU33_07360 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_07365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDU33_07370 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DDU33_07375 PF00480 ROK family DDU33_07380 PF00701 Dihydrodipicolinate synthetase family DDU33_07385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DDU33_07390 PF01979 Amidohydrolase family DDU33_07395 PF00149 Calcineurin-like phosphoesterase DDU33_07400 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDU33_07405 PF00271 Helicase conserved C-terminal domain DDU33_07405 PF03880 DbpA RNA binding domain DDU33_07405 PF00270 DEAD/DEAH box helicase DDU33_07415 PF00575 S1 RNA binding domain DDU33_07415 PF01138 3' exoribonuclease family, domain 1 DDU33_07415 PF03725 3' exoribonuclease family, domain 2 DDU33_07415 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DDU33_07415 PF00013 KH domain DDU33_07420 PF00521 DNA gyrase/topoisomerase IV, subunit A DDU33_07420 PF03989 DNA gyrase C-terminal domain, beta-propeller DDU33_07425 PF03882 MukF winged-helix domain DDU33_07425 PF17193 MukF C-terminal domain DDU33_07425 PF17192 MukF middle domain DDU33_07430 PF04288 MukE-like family DDU33_07435 PF16330 MukB hinge domain DDU33_07435 PF04310 MukB N-terminal DDU33_07440 PF01966 HD domain DDU33_07440 PF08335 GlnD PII-uridylyltransferase DDU33_07445 PF06295 Protein of unknown function (DUF1043) DDU33_07450 PF00572 Ribosomal protein L13 DDU33_07455 PF00380 Ribosomal protein S9/S16 DDU33_07460 PF03883 Peroxide stress protein YaaA DDU33_07470 PF06421 GTP-binding protein LepA C-terminus DDU33_07470 PF03144 Elongation factor Tu domain 2 DDU33_07470 PF00679 Elongation factor G C-terminus DDU33_07470 PF00009 Elongation factor Tu GTP binding domain DDU33_07475 PF10502 Signal peptidase, peptidase S26 DDU33_07480 PF14622 Ribonuclease-III-like DDU33_07480 PF00035 Double-stranded RNA binding motif DDU33_07485 PF07650 KH domain DDU33_07485 PF01926 50S ribosome-binding GTPase DDU33_07490 PF11967 Recombination protein O N terminal DDU33_07490 PF02565 Recombination protein O C terminal DDU33_07495 PF07715 TonB-dependent Receptor Plug Domain DDU33_07495 PF00593 TonB dependent receptor DDU33_07500 PF07690 Major Facilitator Superfamily DDU33_07505 PF11893 Domain of unknown function (DUF3413) DDU33_07505 PF00884 Sulfatase DDU33_07510 PF07208 Protein of unknown function (DUF1414) DDU33_07520 PF00665 Integrase core domain DDU33_07520 PF13936 Helix-turn-helix domain DDU33_07530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDU33_07535 PF00873 AcrB/AcrD/AcrF family DDU33_07540 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DDU33_07540 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDU33_07545 PF01206 Sulfurtransferase TusA DDU33_07550 PF04143 Sulphur transport DDU33_07555 PF00132 Bacterial transferase hexapeptide (six repeats) DDU33_07555 PF12804 MobA-like NTP transferase domain DDU33_07565 PF00575 S1 RNA binding domain DDU33_07565 PF00773 RNB domain DDU33_07565 PF08206 Ribonuclease B OB domain DDU33_07570 PF13180 PDZ domain DDU33_07575 PF02224 Cytidylate kinase DDU33_07580 PF00575 S1 RNA binding domain DDU33_07585 PF00216 Bacterial DNA-binding protein DDU33_07590 PF06305 Lipopolysaccharide assembly protein A domain DDU33_07595 PF18073 Rubredoxin metal binding domain DDU33_07600 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DDU33_07605 PF01253 Translation initiation factor SUI1 DDU33_07610 PF00696 Amino acid kinase family DDU33_07610 PF01842 ACT domain DDU33_07705 PF00589 Phage integrase family DDU33_07710 PF04363 Protein of unknown function (DUF496) DDU33_07715 PF02541 Ppx/GppA phosphatase family DDU33_07720 PF04074 YhcH/YjgK/YiaL DDU33_07725 PF01380 SIS domain DDU33_07725 PF01418 Helix-turn-helix domain, rpiR family DDU33_07730 PF00266 Aminotransferase class-V DDU33_07735 PF00155 Aminotransferase class I and II DDU33_07745 PF02811 PHP domain DDU33_07755 PF02899 Phage integrase, N-terminal SAM-like domain DDU33_07755 PF00589 Phage integrase family DDU33_07805 PF05840 Bacteriophage replication gene A protein (GPA) DDU33_07965 PF02391 MoaE protein DDU33_07970 PF02597 ThiS family DDU33_07975 PF01967 MoaC family DDU33_07980 PF04055 Radical SAM superfamily DDU33_07980 PF06463 Molybdenum Cofactor Synthesis C DDU33_07985 PF04241 Protein of unknown function (DUF423) DDU33_07990 PF07995 Glucose / Sorbosone dehydrogenase DDU33_08000 PF12802 MarR family DDU33_08005 PF02311 AraC-like ligand binding domain DDU33_08005 PF12833 Helix-turn-helix domain DDU33_08030 PF07409 Phage protein GP46 DDU33_08080 PF04851 Type III restriction enzyme, res subunit DDU33_08085 PF07669 Eco57I restriction-modification methylase DDU33_08095 PF01381 Helix-turn-helix DDU33_08110 PF00672 HAMP domain DDU33_08110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_08110 PF00512 His Kinase A (phospho-acceptor) domain DDU33_08115 PF00072 Response regulator receiver domain DDU33_08115 PF00486 Transcriptional regulatory protein, C terminal DDU33_08135 PF07731 Multicopper oxidase DDU33_08135 PF07732 Multicopper oxidase DDU33_08145 PF01728 FtsJ-like methyltransferase DDU33_08145 PF18125 RlmM ferredoxin-like domain DDU33_08150 PF17757 UvrB interaction domain DDU33_08150 PF02151 UvrB/uvrC motif DDU33_08150 PF04851 Type III restriction enzyme, res subunit DDU33_08150 PF00271 Helicase conserved C-terminal domain DDU33_08150 PF12344 Ultra-violet resistance protein B DDU33_08160 PF00005 ABC transporter DDU33_08165 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_08185 PF00929 Exonuclease DDU33_08185 PF08411 Exonuclease C-terminal DDU33_08190 PF04247 Invasion gene expression up-regulator, SirB DDU33_08195 PF04751 Protein of unknown function (DUF615) DDU33_08200 PF01523 Putative modulator of DNA gyrase DDU33_08205 PF02222 ATP-grasp domain DDU33_08205 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DDU33_08210 PF00710 Asparaginase, N-terminal DDU33_08210 PF17763 Glutaminase/Asparaginase C-terminal domain DDU33_08215 PF00731 AIR carboxylase DDU33_08220 PF00043 Glutathione S-transferase, C-terminal domain DDU33_08220 PF02798 Glutathione S-transferase, N-terminal domain DDU33_08225 PF04386 Stringent starvation protein B DDU33_08230 PF01113 Dihydrodipicolinate reductase, N-terminus DDU33_08230 PF05173 Dihydrodipicolinate reductase, C-terminus DDU33_08235 PF01053 Cys/Met metabolism PLP-dependent enzyme DDU33_08240 PF01297 Zinc-uptake complex component A periplasmic DDU33_08245 PF00005 ABC transporter DDU33_08250 PF00950 ABC 3 transport family DDU33_08255 PF00950 ABC 3 transport family DDU33_08260 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DDU33_08260 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDU33_08270 PF02576 RimP N-terminal domain DDU33_08270 PF17384 RimP C-terminal SH3 domain DDU33_08275 PF00575 S1 RNA binding domain DDU33_08275 PF13184 NusA-like KH domain DDU33_08275 PF08529 NusA N-terminal domain DDU33_08280 PF00009 Elongation factor Tu GTP binding domain DDU33_08280 PF11987 Translation-initiation factor 2 DDU33_08280 PF04760 Translation initiation factor IF-2, N-terminal region DDU33_08290 PF13419 Haloacid dehalogenase-like hydrolase DDU33_08295 PF03797 Autotransporter beta-domain DDU33_08295 PF00082 Subtilase family DDU33_08300 PF02033 Ribosome-binding factor A DDU33_08305 PF09157 Pseudouridine synthase II TruB, C-terminal DDU33_08305 PF16198 tRNA pseudouridylate synthase B C-terminal domain DDU33_08305 PF01509 TruB family pseudouridylate synthase (N terminal domain) DDU33_08310 PF13406 Transglycosylase SLT domain DDU33_08315 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDU33_08315 PF02806 Alpha amylase, C-terminal all-beta domain DDU33_08315 PF00128 Alpha amylase, catalytic domain DDU33_08320 PF00128 Alpha amylase, catalytic domain DDU33_08320 PF18390 Glycogen debranching enzyme C-terminal domain DDU33_08320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDU33_08325 PF00483 Nucleotidyl transferase DDU33_08330 PF08323 Starch synthase catalytic domain DDU33_08330 PF00534 Glycosyl transferases group 1 DDU33_08335 PF00343 Carbohydrate phosphorylase DDU33_08340 PF01565 FAD binding domain DDU33_08340 PF09330 D-lactate dehydrogenase, membrane binding DDU33_08345 PF01515 Phosphate acetyl/butaryl transferase DDU33_08345 PF07085 DRTGG domain DDU33_08350 PF00871 Acetokinase family DDU33_08355 PF02678 Pirin DDU33_08355 PF05726 Pirin C-terminal cupin domain DDU33_08360 PF05726 Pirin C-terminal cupin domain DDU33_08360 PF02678 Pirin DDU33_08370 PF02254 TrkA-N domain DDU33_08370 PF00999 Sodium/hydrogen exchanger family DDU33_08375 PF02130 Uncharacterized protein family UPF0054 DDU33_08380 PF17176 tRNA-binding domain DDU33_08380 PF13718 GNAT acetyltransferase 2 DDU33_08380 PF05127 Helicase DDU33_08385 PF00155 Aminotransferase class I and II DDU33_08390 PF02794 RTX toxin acyltransferase family DDU33_08395 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DDU33_08395 PF02382 N-terminal domain in RTX protein DDU33_08395 PF08339 RTX C-terminal domain DDU33_08400 PF00005 ABC transporter DDU33_08400 PF00664 ABC transporter transmembrane region DDU33_08400 PF03412 Peptidase C39 family DDU33_08410 PF08245 Mur ligase middle domain DDU33_08415 PF17848 Acetyl-coA carboxylase zinc finger domain DDU33_08415 PF01039 Carboxyl transferase domain DDU33_08420 PF03819 MazG nucleotide pyrophosphohydrolase domain DDU33_08425 PF00486 Transcriptional regulatory protein, C terminal DDU33_08425 PF00072 Response regulator receiver domain DDU33_08430 PF16527 Two-component sensor protein CpxA, periplasmic domain DDU33_08430 PF00672 HAMP domain DDU33_08430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_08430 PF00512 His Kinase A (phospho-acceptor) domain DDU33_08435 PF00005 ABC transporter DDU33_08435 PF02687 FtsX-like permease family DDU33_08435 PF12704 MacB-like periplasmic core domain DDU33_08440 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DDU33_08445 PF06005 Cell division protein ZapB DDU33_08450 PF00265 Thymidine kinase DDU33_08455 PF00814 Glycoprotease family DDU33_08460 PF00793 DAHP synthetase I family DDU33_08465 PF04228 Putative neutral zinc metallopeptidase DDU33_08470 PF17854 FtsK alpha domain DDU33_08470 PF09397 Ftsk gamma domain DDU33_08470 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DDU33_08470 PF01580 FtsK/SpoIIIE family DDU33_08475 PF01037 Lrp/AsnC ligand binding domain DDU33_08480 PF00570 HRDC domain DDU33_08480 PF01612 3'-5' exonuclease DDU33_08485 PF00480 ROK family DDU33_08485 PF01047 MarR family DDU33_08495 PF05872 Bacterial protein of unknown function (DUF853) DDU33_08505 PF00271 Helicase conserved C-terminal domain DDU33_08505 PF00270 DEAD/DEAH box helicase DDU33_08510 PF08272 Topoisomerase I zinc-ribbon-like DDU33_08510 PF01396 Topoisomerase DNA binding C4 zinc finger DDU33_08510 PF01131 DNA topoisomerase DDU33_08510 PF01751 Toprim domain DDU33_08515 PF03466 LysR substrate binding domain DDU33_08515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_08520 PF00583 Acetyltransferase (GNAT) family DDU33_08520 PF00696 Amino acid kinase family DDU33_08525 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDU33_08530 PF01784 NIF3 (NGG1p interacting factor 3) DDU33_08535 PF03477 ATP cone domain DDU33_08540 PF00877 NlpC/P60 family DDU33_08545 PF00216 Bacterial DNA-binding protein DDU33_08550 PF03147 Ferredoxin-fold anticodon binding domain DDU33_08550 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DDU33_08550 PF01588 Putative tRNA binding domain DDU33_08550 PF03484 tRNA synthetase B5 domain DDU33_08550 PF03483 B3/4 domain DDU33_08555 PF01409 tRNA synthetases class II core domain (F) DDU33_08555 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DDU33_08565 PF08501 Shikimate dehydrogenase substrate binding domain DDU33_08570 PF05166 YcgL domain DDU33_08575 PF00772 DnaB-like helicase N terminal domain DDU33_08575 PF03796 DnaB-like helicase C terminal domain DDU33_08580 PF04055 Radical SAM superfamily DDU33_08590 PF01132 Elongation factor P (EF-P) OB domain DDU33_08590 PF08207 Elongation factor P (EF-P) KOW-like domain DDU33_08590 PF09285 Elongation factor P, C-terminal DDU33_08595 PF01497 Periplasmic binding protein DDU33_08600 PF01032 FecCD transport family DDU33_08605 PF01032 FecCD transport family DDU33_08610 PF00005 ABC transporter DDU33_08615 PF01865 Protein of unknown function DUF47 DDU33_08620 PF01384 Phosphate transporter family DDU33_08625 PF08239 Bacterial SH3 domain DDU33_08630 PF01336 OB-fold nucleic acid binding domain DDU33_08630 PF00152 tRNA synthetases class II (D, K and N) DDU33_08635 PF14718 Soluble lytic murein transglycosylase L domain DDU33_08635 PF01464 Transglycosylase SLT domain DDU33_08640 PF00156 Phosphoribosyl transferase domain DDU33_08645 PF05195 Aminopeptidase P, N-terminal domain DDU33_08645 PF00557 Metallopeptidase family M24 DDU33_08650 PF07411 Domain of unknown function (DUF1508) DDU33_08660 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system DDU33_08675 PF03840 Preprotein translocase SecG subunit DDU33_08680 PF01131 DNA topoisomerase DDU33_08680 PF01751 Toprim domain DDU33_08685 PF03411 Penicillin-insensitive murein endopeptidase DDU33_08690 PF00375 Sodium:dicarboxylate symporter family DDU33_08695 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) DDU33_08700 PF01545 Cation efflux family DDU33_08700 PF16916 Dimerisation domain of Zinc Transporter DDU33_08705 PF01765 Ribosome recycling factor DDU33_08710 PF00696 Amino acid kinase family DDU33_08715 PF00884 Sulfatase DDU33_08720 PF01264 Chorismate synthase DDU33_08725 PF00924 Mechanosensitive ion channel DDU33_08725 PF12795 Mechanosensitive ion channel porin domain DDU33_08725 PF12794 Mechanosensitive ion channel inner membrane domain 1 DDU33_08730 PF00924 Mechanosensitive ion channel DDU33_08730 PF12794 Mechanosensitive ion channel inner membrane domain 1 DDU33_08730 PF12795 Mechanosensitive ion channel porin domain DDU33_08735 PF00501 AMP-binding enzyme DDU33_08740 PF03925 SeqA protein C-terminal domain DDU33_08740 PF17206 SeqA protein N-terminal domain DDU33_08745 PF00561 alpha/beta hydrolase fold DDU33_08750 PF13649 Methyltransferase domain DDU33_08755 PF00889 Elongation factor TS DDU33_08760 PF00318 Ribosomal protein S2 DDU33_08765 PF00005 ABC transporter DDU33_08765 PF06472 ABC transporter transmembrane region 2 DDU33_08770 PF01434 Peptidase family M41 DDU33_08770 PF06480 FtsH Extracellular DDU33_08770 PF00004 ATPase family associated with various cellular activities (AAA) DDU33_08770 PF17862 AAA+ lid domain DDU33_08775 PF01728 FtsJ-like methyltransferase DDU33_08780 PF00571 CBS domain DDU33_08780 PF00478 IMP dehydrogenase / GMP reductase domain DDU33_08795 PF00117 Glutamine amidotransferase class-I DDU33_08795 PF00958 GMP synthase C terminal domain DDU33_08795 PF02540 NAD synthase DDU33_08800 PF13609 Gram-negative porin DDU33_08810 PF08942 Domain of unknown function (DUF1919) DDU33_08815 PF01235 Sodium:alanine symporter family DDU33_08820 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDU33_08820 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDU33_08825 PF02817 e3 binding domain DDU33_08825 PF00364 Biotin-requiring enzyme DDU33_08825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDU33_08830 PF17831 Pyruvate dehydrogenase E1 component middle domain DDU33_08830 PF00456 Transketolase, thiamine diphosphate binding domain DDU33_08840 PF01180 Dihydroorotate dehydrogenase DDU33_08845 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DDU33_08845 PF14572 Phosphoribosyl synthetase-associated domain DDU33_08850 PF00288 GHMP kinases N terminal domain DDU33_08850 PF08544 GHMP kinases C terminal DDU33_08855 PF03550 Outer membrane lipoprotein LolB DDU33_08860 PF13230 Glutamine amidotransferases class-II DDU33_08865 PF00950 ABC 3 transport family DDU33_08870 PF16193 AAA C-terminal domain DDU33_08870 PF12002 MgsA AAA+ ATPase C terminal DDU33_08870 PF00004 ATPase family associated with various cellular activities (AAA) DDU33_08875 PF04093 rod shape-determining protein MreD DDU33_08880 PF04085 rod shape-determining protein MreC DDU33_08890 PF01810 LysE type translocator DDU33_08895 PF00485 Phosphoribulokinase / Uridine kinase family DDU33_08900 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) DDU33_08905 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DDU33_08905 PF02779 Transketolase, pyrimidine binding domain DDU33_08905 PF02780 Transketolase, C-terminal domain DDU33_08910 PF00459 Inositol monophosphatase family DDU33_08915 PF00701 Dihydrodipicolinate synthetase family DDU33_08920 PF01293 Phosphoenolpyruvate carboxykinase DDU33_08925 PF04977 Septum formation initiator DDU33_08930 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DDU33_08935 PF02542 YgbB family DDU33_08945 PF03610 PTS system fructose IIA component DDU33_08945 PF05524 PEP-utilising enzyme, N-terminal DDU33_08945 PF00391 PEP-utilising enzyme, mobile domain DDU33_08945 PF00381 PTS HPr component phosphorylation site DDU33_08950 PF02734 DAK2 domain DDU33_08955 PF02733 Dak1 domain DDU33_08960 PF00884 Sulfatase DDU33_08965 PF02609 Exonuclease VII small subunit DDU33_08970 PF00348 Polyprenyl synthetase DDU33_08975 PF03279 Bacterial lipid A biosynthesis acyltransferase DDU33_08980 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DDU33_08985 PF01416 tRNA pseudouridine synthase DDU33_08990 PF01227 GTP cyclohydrolase I DDU33_09000 PF03824 High-affinity nickel-transport protein DDU33_09015 PF01206 Sulfurtransferase TusA DDU33_09020 PF01814 Hemerythrin HHE cation binding domain DDU33_09025 PF01702 Queuine tRNA-ribosyltransferase DDU33_09035 PF00484 Carbonic anhydrase DDU33_09040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDU33_09040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDU33_09040 PF00205 Thiamine pyrophosphate enzyme, central domain DDU33_09045 PF10369 Small subunit of acetolactate synthase DDU33_09050 PF03889 Alternative ribosome-rescue factor A DDU33_09055 PF13649 Methyltransferase domain DDU33_09060 PF01594 AI-2E family transporter DDU33_09065 PF01933 Uncharacterised protein family UPF0052 DDU33_09070 PF02547 Queuosine biosynthesis protein DDU33_09080 PF03772 Competence protein DDU33_09080 PF00753 Metallo-beta-lactamase superfamily DDU33_09080 PF13567 Domain of unknown function (DUF4131) DDU33_09085 PF00218 Indole-3-glycerol phosphate synthase DDU33_09085 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DDU33_09090 PF04287 tRNA pseudouridine synthase C DDU33_09095 PF00849 RNA pseudouridylate synthase DDU33_09100 PF03701 Uncharacterised protein family (UPF0181) DDU33_09110 PF01928 CYTH domain DDU33_09115 PF04317 YcjX-like family, DUF463 DDU33_09120 PF01668 SmpB protein DDU33_09125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDU33_09125 PF02403 Seryl-tRNA synthetase N-terminal domain DDU33_09130 PF02233 NAD(P) transhydrogenase beta subunit DDU33_09135 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DDU33_09135 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DDU33_09135 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DDU33_09140 PF00588 SpoU rRNA Methylase family DDU33_09145 PF00483 Nucleotidyl transferase DDU33_09150 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDU33_09150 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDU33_09150 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDU33_09150 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDU33_09155 PF02599 Global regulator protein family DDU33_09160 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDU33_09160 PF01411 tRNA synthetases class II (A) DDU33_09160 PF02272 DHHA1 domain DDU33_09165 PF00582 Universal stress protein family DDU33_09170 PF00027 Cyclic nucleotide-binding domain DDU33_09170 PF00325 Bacterial regulatory proteins, crp family DDU33_09175 PF01386 Ribosomal L25p family DDU33_09185 PF13936 Helix-turn-helix domain DDU33_09185 PF00665 Integrase core domain DDU33_09195 PF00939 Sodium:sulfate symporter transmembrane region DDU33_09200 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DDU33_09200 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DDU33_09205 PF04223 Citrate lyase, alpha subunit (CitF) DDU33_09210 PF03328 HpcH/HpaI aldolase/citrate lyase family DDU33_09215 PF06857 Malonate decarboxylase delta subunit (MdcD) DDU33_09220 PF02219 Methylenetetrahydrofolate reductase DDU33_09235 PF03884 DNA gyrase inhibitor YacG DDU33_09240 PF01121 Dephospho-CoA kinase DDU33_09250 PF00482 Type II secretion system (T2SS), protein F DDU33_09255 PF00437 Type II/IV secretion system protein DDU33_09255 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DDU33_09260 PF07963 Prokaryotic N-terminal methylation motif DDU33_09265 PF18073 Rubredoxin metal binding domain DDU33_09270 PF00186 Dihydrofolate reductase DDU33_09275 PF00696 Amino acid kinase family DDU33_09275 PF01472 PUA domain DDU33_09280 PF01925 Sulfite exporter TauE/SafE DDU33_09285 PF00730 HhH-GPD superfamily base excision DNA repair protein DDU33_09285 PF00633 Helix-hairpin-helix motif DDU33_09285 PF10576 Iron-sulfur binding domain of endonuclease III DDU33_09295 PF05016 ParE toxin of type II toxin-antitoxin system, parDE DDU33_09300 PF04221 RelB antitoxin DDU33_09335 PF08279 HTH domain DDU33_09335 PF13280 WYL domain DDU33_09345 PF01406 tRNA synthetases class I (C) catalytic domain DDU33_09345 PF09190 DALR domain DDU33_09350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDU33_09355 PF12627 Probable RNA and SrmB- binding site of polymerase A DDU33_09355 PF01966 HD domain DDU33_09355 PF01743 Poly A polymerase head domain DDU33_09360 PF01381 Helix-turn-helix DDU33_09375 PF00149 Calcineurin-like phosphoesterase DDU33_09375 PF02872 5'-nucleotidase, C-terminal domain DDU33_09380 PF04384 Iron-sulphur cluster assembly DDU33_09385 PF00111 2Fe-2S iron-sulfur cluster binding domain DDU33_09390 PF00012 Hsp70 protein DDU33_09400 PF10946 Protein of unknown function DUF2625 DDU33_09405 PF01501 Glycosyl transferase family 8 DDU33_09405 PF00535 Glycosyl transferase family 2 DDU33_09410 PF07743 HSCB C-terminal oligomerisation domain DDU33_09415 PF01521 Iron-sulphur cluster biosynthesis DDU33_09420 PF01592 NifU-like N terminal domain DDU33_09425 PF00266 Aminotransferase class-V DDU33_09430 PF02082 Transcriptional regulator DDU33_09435 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DDU33_09440 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DDU33_09440 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DDU33_09445 PF00072 Response regulator receiver domain DDU33_09445 PF18415 Histidine kinase receptor ArcB trans-membrane domain DDU33_09445 PF01627 Hpt domain DDU33_09445 PF00512 His Kinase A (phospho-acceptor) domain DDU33_09445 PF00989 PAS fold DDU33_09445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_09455 PF01713 Smr domain DDU33_09460 PF05175 Methyltransferase small domain DDU33_09465 PF01272 Transcription elongation factor, GreA/GreB, C-term DDU33_09465 PF03449 Transcription elongation factor, N-terminal DDU33_09470 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DDU33_09475 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DDU33_09475 PF01488 Shikimate / quinate 5-dehydrogenase DDU33_09475 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DDU33_09480 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DDU33_09480 PF01926 50S ribosome-binding GTPase DDU33_09485 PF00294 pfkB family carbohydrate kinase DDU33_09485 PF01467 Cytidylyltransferase-like DDU33_09490 PF00639 PPIC-type PPIASE domain DDU33_09490 PF09312 SurA N-terminal domain DDU33_09495 PF00398 Ribosomal RNA adenine dimethylase DDU33_09500 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDU33_09500 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DDU33_09505 PF01641 SelR domain DDU33_09510 PF04172 LrgB-like family DDU33_09515 PF03788 LrgA family DDU33_09520 PF06733 DEAD_2 DDU33_09520 PF13307 Helicase C-terminal domain DDU33_09525 PF00005 ABC transporter DDU33_09535 PF03459 TOBE domain DDU33_09535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDU33_09540 PF17760 UvrA interaction domain DDU33_09540 PF17755 UvrA DNA-binding domain DDU33_09545 PF00436 Single-strand binding protein family DDU33_09550 PF00080 Copper/zinc superoxide dismutase (SODC) DDU33_09555 PF00005 ABC transporter DDU33_09555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDU33_09560 PF12911 N-terminal TM domain of oligopeptide transport permease C DDU33_09560 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_09565 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_09570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDU33_09575 PF00158 Sigma-54 interaction domain DDU33_09575 PF18024 Helix-turn-helix domain DDU33_09580 PF13580 SIS domain DDU33_09590 PF03222 Tryptophan/tyrosine permease family DDU33_09595 PF00155 Aminotransferase class I and II DDU33_09610 PF13407 Periplasmic binding protein domain DDU33_09615 PF03553 Na+/H+ antiporter family DDU33_09620 PF00816 H-NS histone family DDU33_09625 PF01842 ACT domain DDU33_09625 PF00551 Formyl transferase DDU33_09630 PF02698 DUF218 domain DDU33_09635 PF00561 alpha/beta hydrolase fold DDU33_09640 PF00356 Bacterial regulatory proteins, lacI family DDU33_09640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DDU33_09645 PF09335 SNARE associated Golgi protein DDU33_09650 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DDU33_09650 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DDU33_09665 PF08264 Anticodon-binding domain of tRNA DDU33_09665 PF00133 tRNA synthetases class I (I, L, M and V) DDU33_09665 PF13603 Leucyl-tRNA synthetase, Domain 2 DDU33_09670 PF04390 Lipopolysaccharide-assembly DDU33_09675 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DDU33_09675 PF06144 DNA polymerase III, delta subunit DDU33_09680 PF04453 LPS transport system D DDU33_09680 PF03968 OstA-like protein DDU33_09685 PF04055 Radical SAM superfamily DDU33_09685 PF06969 HemN C-terminal domain DDU33_09695 PF04220 Der GTPase activator (YihI) DDU33_09700 PF03616 Sodium/glutamate symporter DDU33_09705 PF06062 Uncharacterised protein family (UPF0231) DDU33_09710 PF08335 GlnD PII-uridylyltransferase DDU33_09710 PF03710 Glutamate-ammonia ligase adenylyltransferase DDU33_09715 PF00312 Ribosomal protein S15 DDU33_09720 PF05661 Protein of unknown function (DUF808) DDU33_09725 PF00665 Integrase core domain DDU33_09725 PF13936 Helix-turn-helix domain DDU33_09730 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DDU33_09735 PF03471 Transporter associated domain DDU33_09735 PF00571 CBS domain DDU33_09740 PF00795 Carbon-nitrogen hydrolase DDU33_09745 PF00210 Ferritin-like domain DDU33_09750 PF18030 RimK PreATP-grasp domain DDU33_09750 PF08443 RimK-like ATP-grasp domain DDU33_09760 PF00912 Transglycosylase DDU33_09765 PF01371 Trp repressor protein DDU33_09770 PF03548 Outer membrane lipoprotein carrier protein LolA DDU33_09775 PF01367 5'-3' exonuclease, C-terminal SAM fold DDU33_09775 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DDU33_09775 PF01612 3'-5' exonuclease DDU33_09775 PF00476 DNA polymerase family A DDU33_09795 PF00290 Tryptophan synthase alpha chain DDU33_09800 PF00291 Pyridoxal-phosphate dependent enzyme DDU33_09805 PF00106 short chain dehydrogenase DDU33_09810 PF03692 Putative zinc- or iron-chelating domain DDU33_09815 PF01906 Putative heavy-metal-binding DDU33_09820 PF01725 Ham1 family DDU33_09825 PF00180 Isocitrate/isopropylmalate dehydrogenase DDU33_09830 PF07119 Protein of unknown function (DUF1375) DDU33_09835 PF02803 Thiolase, C-terminal domain DDU33_09835 PF00108 Thiolase, N-terminal domain DDU33_09840 PF00378 Enoyl-CoA hydratase/isomerase DDU33_09840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDU33_09840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DDU33_09850 PF03315 Serine dehydratase beta chain DDU33_09850 PF03313 Serine dehydratase alpha chain DDU33_09860 PF02634 FdhD/NarQ family DDU33_09865 PF00384 Molybdopterin oxidoreductase DDU33_09865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDU33_09865 PF01568 Molydopterin dinucleotide binding domain DDU33_09870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDU33_09870 PF00384 Molybdopterin oxidoreductase DDU33_09870 PF01568 Molydopterin dinucleotide binding domain DDU33_09875 PF13247 4Fe-4S dicluster domain DDU33_09875 PF09163 Formate dehydrogenase N, transmembrane DDU33_09880 PF01292 Prokaryotic cytochrome b561 DDU33_09885 PF04216 Protein involved in formate dehydrogenase formation DDU33_09895 PF03449 Transcription elongation factor, N-terminal DDU33_09895 PF01272 Transcription elongation factor, GreA/GreB, C-term DDU33_09900 PF00883 Cytosol aminopeptidase family, catalytic domain DDU33_09900 PF12404 Peptidase DDU33_09905 PF01758 Sodium Bile acid symporter family DDU33_09910 PF00549 CoA-ligase DDU33_09910 PF08442 ATP-grasp domain DDU33_09915 PF02629 CoA binding domain DDU33_09915 PF00549 CoA-ligase DDU33_09920 PF01751 Toprim domain DDU33_09920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDU33_09920 PF18053 DNA gyrase B subunit insert domain DDU33_09920 PF00986 DNA gyrase B subunit, carboxyl terminus DDU33_09920 PF00204 DNA gyrase B DDU33_09925 PF08328 Adenylosuccinate lyase C-terminal DDU33_09925 PF00206 Lyase DDU33_09930 PF11941 Domain of unknown function (DUF3459) DDU33_09930 PF00128 Alpha amylase, catalytic domain DDU33_09935 PF02378 Phosphotransferase system, EIIC DDU33_09935 PF00367 phosphotransferase system, EIIB DDU33_09940 PF00356 Bacterial regulatory proteins, lacI family DDU33_09945 PF04356 Protein of unknown function (DUF489) DDU33_09950 PF00664 ABC transporter transmembrane region DDU33_09950 PF00005 ABC transporter DDU33_09960 PF13742 OB-fold nucleic acid binding domain DDU33_09960 PF02601 Exonuclease VII, large subunit DDU33_09970 PF03562 MltA specific insert domain DDU33_09970 PF06725 3D domain DDU33_09980 PF08003 Protein of unknown function (DUF1698) DDU33_09985 PF18381 YcaO cyclodehydratase C-terminal domain DDU33_09985 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DDU33_09990 PF00575 S1 RNA binding domain DDU33_09990 PF10150 Ribonuclease E/G family DDU33_09995 PF01336 OB-fold nucleic acid binding domain DDU33_09995 PF00152 tRNA synthetases class II (D, K and N) DDU33_10005 PF01914 MarC family integral membrane protein DDU33_10015 PF04452 RNA methyltransferase DDU33_10020 PF02622 Uncharacterized ACR, COG1678 DDU33_10025 PF00849 RNA pseudouridylate synthase DDU33_10030 PF18337 RapA N-terminal Tudor like domain DDU33_10030 PF00176 SNF2 family N-terminal domain DDU33_10030 PF12137 RNA polymerase recycling family C-terminal DDU33_10030 PF00271 Helicase conserved C-terminal domain DDU33_10030 PF18339 RapA N-terminal Tudor like domain 1 DDU33_10040 PF05958 tRNA (Uracil-5-)-methyltransferase DDU33_10040 PF01938 TRAM domain DDU33_10045 PF01048 Phosphorylase superfamily DDU33_10050 PF11398 Protein of unknown function (DUF2813) DDU33_10055 PF11892 Domain of unknown function (DUF3412) DDU33_10055 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DDU33_10055 PF03641 Possible lysine decarboxylase DDU33_10065 PF02837 Glycosyl hydrolases family 2, sugar binding domain DDU33_10065 PF16353 Domain of unknown function(DUF4981) DDU33_10065 PF00703 Glycosyl hydrolases family 2 DDU33_10065 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DDU33_10065 PF02929 Beta galactosidase small chain DDU33_10070 PF01263 Aldose 1-epimerase DDU33_10075 PF00288 GHMP kinases N terminal domain DDU33_10075 PF10509 Galactokinase galactose-binding signature DDU33_10075 PF08544 GHMP kinases C terminal DDU33_10080 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DDU33_10080 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DDU33_10085 PF16874 Glycosyl hydrolase family 36 C-terminal domain DDU33_10085 PF16875 Glycosyl hydrolase family 36 N-terminal domain DDU33_10090 PF01306 LacY proton/sugar symporter DDU33_10095 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DDU33_10095 PF00356 Bacterial regulatory proteins, lacI family DDU33_10105 PF00899 ThiF family DDU33_10110 PF03453 MoeA N-terminal region (domain I and II) DDU33_10110 PF03454 MoeA C-terminal region (domain IV) DDU33_10110 PF00994 Probable molybdopterin binding domain DDU33_10115 PF00156 Phosphoribosyl transferase domain DDU33_10120 PF02674 Colicin V production protein DDU33_10125 PF00075 RNase H DDU33_10130 PF00764 Arginosuccinate synthase DDU33_10135 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DDU33_10140 PF00768 D-alanyl-D-alanine carboxypeptidase DDU33_10145 PF00535 Glycosyl transferase family 2 DDU33_10150 PF13416 Bacterial extracellular solute-binding protein DDU33_10155 PF01025 GrpE DDU33_10160 PF04284 Protein of unknown function (DUF441) DDU33_10165 PF00271 Helicase conserved C-terminal domain DDU33_10165 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DDU33_10165 PF04408 Helicase associated domain (HA2) DDU33_10165 PF11898 Domain of unknown function (DUF3418) DDU33_10165 PF00270 DEAD/DEAH box helicase DDU33_10180 PF00005 ABC transporter DDU33_10180 PF00664 ABC transporter transmembrane region DDU33_10185 PF00005 ABC transporter DDU33_10185 PF00664 ABC transporter transmembrane region DDU33_10190 PF03167 Uracil DNA glycosylase superfamily DDU33_10195 PF01228 Glycine radical DDU33_10200 PF00717 Peptidase S24-like DDU33_10205 PF00877 NlpC/P60 family DDU33_10210 PF01261 Xylose isomerase-like TIM barrel DDU33_10245 PF10609 NUBPL iron-transfer P-loop NTPase DDU33_10250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDU33_10255 PF13145 PPIC-type PPIASE domain DDU33_10260 PF00999 Sodium/hydrogen exchanger family DDU33_10270 PF02142 MGS-like domain DDU33_10270 PF01808 AICARFT/IMPCHase bienzyme DDU33_10280 PF00005 ABC transporter DDU33_10280 PF09383 NIL domain DDU33_10285 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_10290 PF03180 NLPA lipoprotein DDU33_10295 PF03180 NLPA lipoprotein DDU33_10300 PF00005 ABC transporter DDU33_10300 PF00664 ABC transporter transmembrane region DDU33_10305 PF03795 YCII-related domain DDU33_10310 PF03061 Thioesterase superfamily DDU33_10315 PF04279 Intracellular septation protein A DDU33_10325 PF04217 Protein of unknown function, DUF412 DDU33_10330 PF01171 PP-loop family DDU33_10335 PF03553 Na+/H+ antiporter family DDU33_10335 PF13726 Na+-H+ antiporter family DDU33_10340 PF03372 Endonuclease/Exonuclease/phosphatase family DDU33_10350 PF02926 THUMP domain DDU33_10350 PF02568 Thiamine biosynthesis protein (ThiI) DDU33_10355 PF00709 Adenylosuccinate synthetase DDU33_10360 PF01145 SPFH domain / Band 7 family DDU33_10365 PF01145 SPFH domain / Band 7 family DDU33_10390 PF13538 UvrD-like helicase C-terminal domain DDU33_10395 PF01168 Alanine racemase, N-terminal domain DDU33_10395 PF00842 Alanine racemase, C-terminal domain DDU33_10400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DDU33_10400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DDU33_10430 PF00742 Homoserine dehydrogenase DDU33_10430 PF01842 ACT domain DDU33_10430 PF00696 Amino acid kinase family DDU33_10430 PF13840 ACT domain DDU33_10430 PF03447 Homoserine dehydrogenase, NAD binding domain DDU33_10435 PF00288 GHMP kinases N terminal domain DDU33_10435 PF08544 GHMP kinases C terminal DDU33_10440 PF00291 Pyridoxal-phosphate dependent enzyme DDU33_10445 PF07498 Rho termination factor, N-terminal domain DDU33_10445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDU33_10445 PF07497 Rho termination factor, RNA-binding domain DDU33_10455 PF00939 Sodium:sulfate symporter transmembrane region DDU33_10460 PF00860 Permease family DDU33_10465 PF00474 Sodium:solute symporter family DDU33_10470 PF01812 5-formyltetrahydrofolate cyclo-ligase family DDU33_10480 PF05164 Cell division protein ZapA DDU33_10485 PF03695 Uncharacterised protein family (UPF0149) DDU33_10490 PF01208 Uroporphyrinogen decarboxylase (URO-D) DDU33_10495 PF04222 Protein of unknown function (DUF416) DDU33_10500 PF00216 Bacterial DNA-binding protein DDU33_10510 PF04354 ZipA, C-terminal FtsZ-binding domain DDU33_10515 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DDU33_10515 PF03120 NAD-dependent DNA ligase OB-fold domain DDU33_10515 PF01653 NAD-dependent DNA ligase adenylation domain DDU33_10515 PF00533 BRCA1 C Terminus (BRCT) domain DDU33_10515 PF12826 Helix-hairpin-helix motif DDU33_10535 PF02508 Rnf-Nqr subunit, membrane protein DDU33_10540 PF04060 Putative Fe-S cluster DDU33_10545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DDU33_10545 PF13375 RnfC Barrel sandwich hybrid domain DDU33_10545 PF12838 4Fe-4S dicluster domain DDU33_10550 PF03116 NQR2, RnfD, RnfE family DDU33_10555 PF04205 FMN-binding domain DDU33_10560 PF14602 Hexapeptide repeat of succinyl-transferase DDU33_10560 PF12464 Maltose acetyltransferase DDU33_10565 PF02508 Rnf-Nqr subunit, membrane protein DDU33_10570 PF03471 Transporter associated domain DDU33_10570 PF03741 Integral membrane protein TerC family DDU33_10575 PF03279 Bacterial lipid A biosynthesis acyltransferase DDU33_10580 PF02470 MlaD protein DDU33_10585 PF02664 S-Ribosylhomocysteinase (LuxS) DDU33_10590 PF00664 ABC transporter transmembrane region DDU33_10590 PF00005 ABC transporter DDU33_10595 PF02535 ZIP Zinc transporter DDU33_10605 PF01926 50S ribosome-binding GTPase DDU33_10610 PF06877 Regulator of ribonuclease activity B DDU33_10615 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) DDU33_10620 PF01206 Sulfurtransferase TusA DDU33_10625 PF04186 FxsA cytoplasmic membrane protein DDU33_10635 PF00849 RNA pseudouridylate synthase DDU33_10640 PF00293 NUDIX domain DDU33_10640 PF09297 NADH pyrophosphatase zinc ribbon domain DDU33_10645 PF01402 Ribbon-helix-helix protein, copG family DDU33_10650 PF00258 Flavodoxin DDU33_10655 PF01475 Ferric uptake regulator family DDU33_10660 PF02660 Glycerol-3-phosphate acyltransferase DDU33_10665 PF02152 Dihydroneopterin aldolase DDU33_10675 PF18075 FtsX extracellular domain DDU33_10680 PF00005 ABC transporter DDU33_10685 PF02881 SRP54-type protein, helical bundle domain DDU33_10685 PF00448 SRP54-type protein, GTPase domain DDU33_10690 PF00303 Thymidylate synthase DDU33_10700 PF02801 Beta-ketoacyl synthase, C-terminal domain DDU33_10700 PF00109 Beta-ketoacyl synthase, N-terminal domain DDU33_10705 PF12633 Adenylate cyclase NT domain DDU33_10705 PF01295 Adenylate cyclase, class-I DDU33_10715 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DDU33_10715 PF01578 Cytochrome C assembly protein DDU33_10720 PF08534 Redoxin DDU33_10725 PF03918 Cytochrome C biogenesis protein DDU33_10735 PF00293 NUDIX domain DDU33_10745 PF07516 SecA Wing and Scaffold domain DDU33_10745 PF02810 SEC-C motif DDU33_10745 PF01043 SecA preprotein cross-linking domain DDU33_10745 PF07517 SecA DEAD-like domain DDU33_10755 PF00376 MerR family regulatory protein DDU33_10755 PF09278 MerR, DNA binding DDU33_10765 PF00403 Heavy-metal-associated domain DDU33_10770 PF00106 short chain dehydrogenase DDU33_10775 PF00881 Nitroreductase family DDU33_10780 PF00920 Dehydratase family DDU33_10785 PF00342 Phosphoglucose isomerase DDU33_10810 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DDU33_10810 PF01488 Shikimate / quinate 5-dehydrogenase DDU33_10810 PF08501 Shikimate dehydrogenase substrate binding domain DDU33_10815 PF12848 ABC transporter DDU33_10815 PF00005 ABC transporter DDU33_10825 PF01722 BolA-like protein DDU33_10830 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_10835 PF00528 Binding-protein-dependent transport system inner membrane component DDU33_10840 PF00005 ABC transporter DDU33_10840 PF08402 TOBE domain