locus-tag class description DDD63_00005 PF08299 Bacterial dnaA protein helix-turn-helix DDD63_00005 PF00308 Bacterial dnaA protein DDD63_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DDD63_00010 PF02767 DNA polymerase III beta subunit, central domain DDD63_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DDD63_00015 PF02463 RecF/RecN/SMC N terminal domain DDD63_00020 PF05258 Dna[CI] antecedent, DciA DDD63_00025 PF01751 Toprim domain DDD63_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_00025 PF00986 DNA gyrase B subunit, carboxyl terminus DDD63_00025 PF00204 DNA gyrase B DDD63_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller DDD63_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A DDD63_00060 PF07690 Major Facilitator Superfamily DDD63_00080 PF00324 Amino acid permease DDD63_00090 PF02733 Dak1 domain DDD63_00090 PF02734 DAK2 domain DDD63_00095 PF00107 Zinc-binding dehydrogenase DDD63_00095 PF08240 Alcohol dehydrogenase GroES-like domain DDD63_00120 PF14821 Threonine synthase N terminus DDD63_00120 PF00291 Pyridoxal-phosphate dependent enzyme DDD63_00125 PF00107 Zinc-binding dehydrogenase DDD63_00135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDD63_00150 PF04203 Sortase domain DDD63_00155 PF00117 Glutamine amidotransferase class-I DDD63_00160 PF00069 Protein kinase domain DDD63_00160 PF03793 PASTA domain DDD63_00165 PF00905 Penicillin binding protein transpeptidase domain DDD63_00170 PF01098 Cell cycle protein DDD63_00180 PF16697 Inner membrane component of T3SS, cytoplasmic domain DDD63_00185 PF01061 ABC-2 type transporter DDD63_00185 PF00005 ABC transporter DDD63_00185 PF00498 FHA domain DDD63_00200 PF01053 Cys/Met metabolism PLP-dependent enzyme DDD63_00210 PF00005 ABC transporter DDD63_00210 PF00664 ABC transporter transmembrane region DDD63_00215 PF00664 ABC transporter transmembrane region DDD63_00215 PF00005 ABC transporter DDD63_00230 PF01661 Macro domain DDD63_00235 PF00075 RNase H DDD63_00255 PF00665 Integrase core domain DDD63_00255 PF13276 HTH-like domain DDD63_00280 PF00746 LPXTG cell wall anchor motif DDD63_00280 PF16555 Gram-positive pilin subunit D1, N-terminal domain DDD63_00290 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DDD63_00290 PF00326 Prolyl oligopeptidase family DDD63_00300 PF01048 Phosphorylase superfamily DDD63_00305 PF02664 S-Ribosylhomocysteinase (LuxS) DDD63_00310 PF01475 Ferric uptake regulator family DDD63_00335 PF07972 NrdI Flavodoxin like DDD63_00340 PF08343 Ribonucleotide reductase N-terminal DDD63_00340 PF02867 Ribonucleotide reductase, barrel domain DDD63_00340 PF00317 Ribonucleotide reductase, all-alpha domain DDD63_00350 PF00291 Pyridoxal-phosphate dependent enzyme DDD63_00390 PF00939 Sodium:sulfate symporter transmembrane region DDD63_00420 PF00268 Ribonucleotide reductase, small chain DDD63_00430 PF01914 MarC family integral membrane protein DDD63_00450 PF01451 Low molecular weight phosphotyrosine protein phosphatase DDD63_00515 PF00270 DEAD/DEAH box helicase DDD63_00515 PF04408 Helicase associated domain (HA2) DDD63_00515 PF00271 Helicase conserved C-terminal domain DDD63_00515 PF11898 Domain of unknown function (DUF3418) DDD63_00515 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DDD63_00520 PF13439 Glycosyltransferase Family 4 DDD63_00520 PF00534 Glycosyl transferases group 1 DDD63_00525 PF13439 Glycosyltransferase Family 4 DDD63_00525 PF00534 Glycosyl transferases group 1 DDD63_00530 PF02585 GlcNAc-PI de-N-acetylase DDD63_00615 PF00465 Iron-containing alcohol dehydrogenase DDD63_00640 PF09339 IclR helix-turn-helix domain DDD63_00640 PF01614 Bacterial transcriptional regulator DDD63_00645 PF00701 Dihydrodipicolinate synthetase family DDD63_00650 PF02447 GntP family permease DDD63_00655 PF13378 Enolase C-terminal domain-like DDD63_00660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DDD63_00660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDD63_00665 PF13378 Enolase C-terminal domain-like DDD63_00670 PF02595 Glycerate kinase family DDD63_00690 PF06259 Alpha/beta hydrolase DDD63_00735 PF00005 ABC transporter DDD63_00770 PF00271 Helicase conserved C-terminal domain DDD63_00770 PF08482 ATP-dependent helicase C-terminal DDD63_00770 PF04408 Helicase associated domain (HA2) DDD63_00770 PF00270 DEAD/DEAH box helicase DDD63_00775 PF01197 Ribosomal protein L31 DDD63_00780 PF00471 Ribosomal protein L33 DDD63_00785 PF00830 Ribosomal L28 family DDD63_00790 PF00444 Ribosomal protein L36 DDD63_00810 PF00005 ABC transporter DDD63_00815 PF00950 ABC 3 transport family DDD63_00820 PF00324 Amino acid permease DDD63_00835 PF02388 FemAB family DDD63_00840 PF02308 MgtC family DDD63_00875 PF00486 Transcriptional regulatory protein, C terminal DDD63_00875 PF00072 Response regulator receiver domain DDD63_00880 PF00672 HAMP domain DDD63_00880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_00880 PF00512 His Kinase A (phospho-acceptor) domain DDD63_00890 PF14437 MafB19-like deaminase DDD63_00905 PF00535 Glycosyl transferase family 2 DDD63_00920 PF00800 Prephenate dehydratase DDD63_00925 PF00781 Diacylglycerol kinase catalytic domain DDD63_00930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDD63_00930 PF02403 Seryl-tRNA synthetase N-terminal domain DDD63_00960 PF01300 Telomere recombination DDD63_01010 PF16320 Ribosomal protein L7/L12 dimerisation domain DDD63_01010 PF00542 Ribosomal protein L7/L12 C-terminal domain DDD63_01035 PF08241 Methyltransferase domain DDD63_01045 PF01867 CRISPR associated protein Cas1 DDD63_01060 PF09344 CT1975-like protein DDD63_01080 PF06463 Molybdenum Cofactor Synthesis C DDD63_01080 PF04055 Radical SAM superfamily DDD63_01090 PF02391 MoaE protein DDD63_01095 PF00581 Rhodanese-like domain DDD63_01095 PF00899 ThiF family DDD63_01100 PF00994 Probable molybdopterin binding domain DDD63_01100 PF03454 MoeA C-terminal region (domain IV) DDD63_01100 PF03453 MoeA N-terminal region (domain I and II) DDD63_01120 PF03733 Inner membrane component domain DDD63_01145 PF00005 ABC transporter DDD63_01150 PF01761 3-dehydroquinate synthase DDD63_01160 PF04107 Glutamate-cysteine ligase family 2(GCS2) DDD63_01170 PF02525 Flavodoxin-like fold DDD63_01195 PF00912 Transglycosylase DDD63_01195 PF00905 Penicillin binding protein transpeptidase domain DDD63_01200 PF02467 Transcription factor WhiB DDD63_01215 PF10576 Iron-sulfur binding domain of endonuclease III DDD63_01215 PF00730 HhH-GPD superfamily base excision DNA repair protein DDD63_01215 PF00633 Helix-hairpin-helix motif DDD63_01225 PF00561 alpha/beta hydrolase fold DDD63_01245 PF00437 Type II/IV secretion system protein DDD63_01275 PF09369 Domain of unknown function (DUF1998) DDD63_01275 PF00270 DEAD/DEAH box helicase DDD63_01275 PF00271 Helicase conserved C-terminal domain DDD63_01285 PF04055 Radical SAM superfamily DDD63_01295 PF07690 Major Facilitator Superfamily DDD63_01315 PF02223 Thymidylate kinase DDD63_01325 PF08386 TAP-like protein DDD63_01325 PF00561 alpha/beta hydrolase fold DDD63_01330 PF00561 alpha/beta hydrolase fold DDD63_01350 PF00300 Histidine phosphatase superfamily (branch 1) DDD63_01360 PF02559 CarD-like/TRCF domain DDD63_01365 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DDD63_01370 PF02542 YgbB family DDD63_01375 PF09190 DALR domain DDD63_01375 PF01406 tRNA synthetases class I (C) catalytic domain DDD63_01380 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDD63_01380 PF00588 SpoU rRNA Methylase family DDD63_01425 PF12169 DNA polymerase III subunits gamma and tau domain III DDD63_01435 PF00633 Helix-hairpin-helix motif DDD63_01435 PF02132 RecR protein DDD63_01435 PF13662 Toprim domain DDD63_01440 PF00696 Amino acid kinase family DDD63_01440 PF13840 ACT domain DDD63_01440 PF01842 ACT domain DDD63_01445 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDD63_01445 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDD63_01455 PF17912 MalK OB fold domain DDD63_01455 PF03459 TOBE domain DDD63_01455 PF00005 ABC transporter DDD63_01460 PF13360 PQQ-like domain DDD63_01460 PF00069 Protein kinase domain DDD63_01500 PF12704 MacB-like periplasmic core domain DDD63_01500 PF00005 ABC transporter DDD63_01505 PF03167 Uracil DNA glycosylase superfamily DDD63_01520 PF00118 TCP-1/cpn60 chaperonin family DDD63_01525 PF06259 Alpha/beta hydrolase DDD63_01570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_01570 PF00672 HAMP domain DDD63_01570 PF00512 His Kinase A (phospho-acceptor) domain DDD63_01575 PF00072 Response regulator receiver domain DDD63_01575 PF00486 Transcriptional regulatory protein, C terminal DDD63_01580 PF04012 PspA/IM30 family DDD63_01590 PF00313 'Cold-shock' DNA-binding domain DDD63_01595 PF11228 Protein of unknown function (DUF3027) DDD63_01600 PF01238 Phosphomannose isomerase type I DDD63_01605 PF00860 Permease family DDD63_01615 PF05977 Transmembrane secretion effector DDD63_01625 PF00266 Aminotransferase class-V DDD63_01630 PF18357 Diphteria toxin repressor SH3 domain DDD63_01630 PF02742 Iron dependent repressor, metal binding and dimerisation domain DDD63_01630 PF01325 Iron dependent repressor, N-terminal DNA binding domain DDD63_01635 PF09335 SNARE associated Golgi protein DDD63_01640 PF00877 NlpC/P60 family DDD63_01640 PF01476 LysM domain DDD63_01645 PF00877 NlpC/P60 family DDD63_01645 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain DDD63_01650 PF00582 Universal stress protein family DDD63_01675 PF01741 Large-conductance mechanosensitive channel, MscL DDD63_01690 PF01812 5-formyltetrahydrofolate cyclo-ligase family DDD63_01765 PF06259 Alpha/beta hydrolase DDD63_01835 PF00005 ABC transporter DDD63_01890 PF00005 ABC transporter DDD63_01895 PF13411 MerR HTH family regulatory protein DDD63_01900 PF13732 Domain of unknown function (DUF4162) DDD63_01900 PF00005 ABC transporter DDD63_01930 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDD63_01930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDD63_01935 PF01261 Xylose isomerase-like TIM barrel DDD63_01950 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DDD63_01950 PF01488 Shikimate / quinate 5-dehydrogenase DDD63_01950 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DDD63_01955 PF01208 Uroporphyrinogen decarboxylase (URO-D) DDD63_01960 PF01593 Flavin containing amine oxidoreductase DDD63_01970 PF00490 Delta-aminolevulinic acid dehydratase DDD63_01975 PF00202 Aminotransferase class-III DDD63_01980 PF09015 NgoMIV restriction enzyme DDD63_01985 PF00145 C-5 cytosine-specific DNA methylase DDD63_01990 PF14338 Mrr N-terminal domain DDD63_01990 PF04471 Restriction endonuclease DDD63_01995 PF03466 LysR substrate binding domain DDD63_01995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDD63_02015 PF07885 Ion channel DDD63_02035 PF00248 Aldo/keto reductase family DDD63_02040 PF01791 DeoC/LacD family aldolase DDD63_02045 PF04198 Putative sugar-binding domain DDD63_02050 PF00465 Iron-containing alcohol dehydrogenase DDD63_02055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_02055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_02060 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_02060 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_02070 PF09370 Phosphoenolpyruvate hydrolase-like DDD63_02090 PF00392 Bacterial regulatory proteins, gntR family DDD63_02090 PF07702 UTRA domain DDD63_02095 PF00171 Aldehyde dehydrogenase family DDD63_02105 PF01470 Pyroglutamyl peptidase DDD63_02155 PF00005 ABC transporter DDD63_02175 PF03591 AzlC protein DDD63_02180 PF00005 ABC transporter DDD63_02185 PF01497 Periplasmic binding protein DDD63_02190 PF01032 FecCD transport family DDD63_02265 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDD63_02270 PF00561 alpha/beta hydrolase fold DDD63_02280 PF07690 Major Facilitator Superfamily DDD63_02285 PF00384 Molybdopterin oxidoreductase DDD63_02285 PF01568 Molydopterin dinucleotide binding domain DDD63_02290 PF13247 4Fe-4S dicluster domain DDD63_02290 PF14711 Respiratory nitrate reductase beta C-terminal DDD63_02300 PF02665 Nitrate reductase gamma subunit DDD63_02300 PF02613 Nitrate reductase delta subunit DDD63_02300 PF00384 Molybdopterin oxidoreductase DDD63_02325 PF01717 Cobalamin-independent synthase, Catalytic domain DDD63_02325 PF08267 Cobalamin-independent synthase, N-terminal domain DDD63_02345 PF16123 Hydroxyacylglutathione hydrolase C-terminus DDD63_02345 PF00753 Metallo-beta-lactamase superfamily DDD63_02350 PF13180 PDZ domain DDD63_02350 PF17820 PDZ domain DDD63_02355 PF00196 Bacterial regulatory proteins, luxR family DDD63_02355 PF00072 Response regulator receiver domain DDD63_02370 PF00005 ABC transporter DDD63_02375 PF00171 Aldehyde dehydrogenase family DDD63_02380 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DDD63_02380 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase DDD63_02385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDD63_02410 PF00857 Isochorismatase family DDD63_02420 PF01026 TatD related DNase DDD63_02435 PF00398 Ribosomal RNA adenine dimethylase DDD63_02445 PF08544 GHMP kinases C terminal DDD63_02445 PF00288 GHMP kinases N terminal domain DDD63_02450 PF12848 ABC transporter DDD63_02450 PF16326 ABC transporter C-terminal domain DDD63_02450 PF00005 ABC transporter DDD63_02455 PF04198 Putative sugar-binding domain DDD63_02455 PF00325 Bacterial regulatory proteins, crp family DDD63_02460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_02460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_02470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDD63_02470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDD63_02470 PF01842 ACT domain DDD63_02480 PF13732 Domain of unknown function (DUF4162) DDD63_02480 PF00005 ABC transporter DDD63_02525 PF12804 MobA-like NTP transferase domain DDD63_02530 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DDD63_02530 PF14572 Phosphoribosyl synthetase-associated domain DDD63_02560 PF01386 Ribosomal L25p family DDD63_02560 PF14693 Ribosomal protein TL5, C-terminal domain DDD63_02565 PF01195 Peptidyl-tRNA hydrolase DDD63_02570 PF00270 DEAD/DEAH box helicase DDD63_02570 PF02559 CarD-like/TRCF domain DDD63_02570 PF00271 Helicase conserved C-terminal domain DDD63_02570 PF03461 TRCF domain DDD63_02570 PF17757 UvrB interaction domain DDD63_02605 PF01565 FAD binding domain DDD63_02605 PF02913 FAD linked oxidases, C-terminal domain DDD63_02620 PF02541 Ppx/GppA phosphatase family DDD63_02625 PF06965 Na+/H+ antiporter 1 DDD63_02660 PF00005 ABC transporter DDD63_02680 PF00005 ABC transporter DDD63_02690 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DDD63_02690 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDD63_02695 PF00999 Sodium/hydrogen exchanger family DDD63_02700 PF01625 Peptide methionine sulfoxide reductase DDD63_02705 PF03449 Transcription elongation factor, N-terminal DDD63_02705 PF01272 Transcription elongation factor, GreA/GreB, C-term DDD63_02710 PF02585 GlcNAc-PI de-N-acetylase DDD63_02715 PF01979 Amidohydrolase family DDD63_02725 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DDD63_02730 PF03976 Polyphosphate kinase 2 (PPK2) DDD63_02735 PF03006 Haemolysin-III related DDD63_02740 PF01255 Putative undecaprenyl diphosphate synthase DDD63_02775 PF02646 RmuC family DDD63_02790 PF01926 50S ribosome-binding GTPase DDD63_02790 PF06071 Protein of unknown function (DUF933) DDD63_02795 PF02384 N-6 DNA Methylase DDD63_02815 PF01850 PIN domain DDD63_02825 PF05731 TROVE domain DDD63_02850 PF01113 Dihydrodipicolinate reductase, N-terminus DDD63_02850 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain DDD63_02880 PF00270 DEAD/DEAH box helicase DDD63_02880 PF00271 Helicase conserved C-terminal domain DDD63_02885 PF12728 Helix-turn-helix domain DDD63_02920 PF12137 RNA polymerase recycling family C-terminal DDD63_02920 PF00176 SNF2 family N-terminal domain DDD63_02920 PF18339 RapA N-terminal Tudor like domain 1 DDD63_02920 PF18337 RapA N-terminal Tudor like domain DDD63_02920 PF00271 Helicase conserved C-terminal domain DDD63_02935 PF12419 SNF2 Helicase protein DDD63_02935 PF00271 Helicase conserved C-terminal domain DDD63_02935 PF00176 SNF2 family N-terminal domain DDD63_02940 PF00176 SNF2 family N-terminal domain DDD63_02940 PF00271 Helicase conserved C-terminal domain DDD63_02940 PF12419 SNF2 Helicase protein DDD63_02955 PF00248 Aldo/keto reductase family DDD63_02975 PF03951 Glutamine synthetase, beta-Grasp domain DDD63_02975 PF00120 Glutamine synthetase, catalytic domain DDD63_02980 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDD63_02980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDD63_03000 PF05525 Branched-chain amino acid transport protein DDD63_03020 PF07859 alpha/beta hydrolase fold DDD63_03035 PF00324 Amino acid permease DDD63_03045 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DDD63_03045 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DDD63_03055 PF00209 Sodium:neurotransmitter symporter family DDD63_03085 PF01734 Patatin-like phospholipase DDD63_03095 PF13722 5TM C-terminal transporter carbon starvation CstA DDD63_03095 PF02554 Carbon starvation protein CstA DDD63_03100 PF00375 Sodium:dicarboxylate symporter family DDD63_03105 PF00324 Amino acid permease DDD63_03110 PF00501 AMP-binding enzyme DDD63_03140 PF13732 Domain of unknown function (DUF4162) DDD63_03140 PF00005 ABC transporter DDD63_03165 PF02127 Aminopeptidase I zinc metalloprotease (M18) DDD63_03170 PF13193 AMP-binding enzyme C-terminal domain DDD63_03170 PF00501 AMP-binding enzyme DDD63_03180 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_03185 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_03185 PF12911 N-terminal TM domain of oligopeptide transport permease C DDD63_03190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDD63_03190 PF00005 ABC transporter DDD63_03215 PF00037 4Fe-4S binding domain DDD63_03220 PF00155 Aminotransferase class I and II DDD63_03225 PF00285 Citrate synthase, C-terminal domain DDD63_03230 PF14602 Hexapeptide repeat of succinyl-transferase DDD63_03230 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle DDD63_03235 PF00293 NUDIX domain DDD63_03235 PF02545 Maf-like protein DDD63_03255 PF02222 ATP-grasp domain DDD63_03255 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DDD63_03260 PF00731 AIR carboxylase DDD63_03265 PF03816 Cell envelope-related transcriptional attenuator domain DDD63_03275 PF03816 Cell envelope-related transcriptional attenuator domain DDD63_03290 PF16363 GDP-mannose 4,6 dehydratase DDD63_03295 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DDD63_03295 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DDD63_03295 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDD63_03315 PF00535 Glycosyl transferase family 2 DDD63_03325 PF01061 ABC-2 type transporter DDD63_03330 PF14524 Wzt C-terminal domain DDD63_03330 PF00005 ABC transporter DDD63_03345 PF14307 Glycosyltransferase WbsX DDD63_03345 PF05045 Rhamnan synthesis protein F DDD63_03355 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DDD63_03360 PF04321 RmlD substrate binding domain DDD63_03375 PF01758 Sodium Bile acid symporter family DDD63_03380 PF00534 Glycosyl transferases group 1 DDD63_03385 PF01370 NAD dependent epimerase/dehydratase family DDD63_03400 PF00483 Nucleotidyl transferase DDD63_03410 PF00459 Inositol monophosphatase family DDD63_03415 PF02467 Transcription factor WhiB DDD63_03440 PF00486 Transcriptional regulatory protein, C terminal DDD63_03440 PF00072 Response regulator receiver domain DDD63_03445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_03445 PF00512 His Kinase A (phospho-acceptor) domain DDD63_03445 PF00672 HAMP domain DDD63_03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_03450 PF00512 His Kinase A (phospho-acceptor) domain DDD63_03450 PF00672 HAMP domain DDD63_03455 PF10647 Lipoprotein LpqB beta-propeller domain DDD63_03470 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DDD63_03470 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DDD63_03475 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDD63_03480 PF04461 Protein of unknown function (DUF520) DDD63_03500 PF00471 Ribosomal protein L33 DDD63_03515 PF00962 Adenosine/AMP deaminase DDD63_03525 PF00155 Aminotransferase class I and II DDD63_03535 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DDD63_03540 PF02357 Transcription termination factor nusG DDD63_03545 PF00298 Ribosomal protein L11, RNA binding domain DDD63_03545 PF03946 Ribosomal protein L11, N-terminal domain DDD63_03550 PF00687 Ribosomal protein L1p/L10e family DDD63_03560 PF00485 Phosphoribulokinase / Uridine kinase family DDD63_03565 PF00466 Ribosomal protein L10 DDD63_03575 PF04565 RNA polymerase Rpb2, domain 3 DDD63_03575 PF10385 RNA polymerase beta subunit external 1 domain DDD63_03575 PF04561 RNA polymerase Rpb2, domain 2 DDD63_03575 PF04560 RNA polymerase Rpb2, domain 7 DDD63_03575 PF04563 RNA polymerase beta subunit DDD63_03575 PF00562 RNA polymerase Rpb2, domain 6 DDD63_03580 PF05000 RNA polymerase Rpb1, domain 4 DDD63_03580 PF04997 RNA polymerase Rpb1, domain 1 DDD63_03580 PF00623 RNA polymerase Rpb1, domain 2 DDD63_03580 PF04983 RNA polymerase Rpb1, domain 3 DDD63_03580 PF04998 RNA polymerase Rpb1, domain 5 DDD63_03585 PF00164 Ribosomal protein S12/S23 DDD63_03590 PF00177 Ribosomal protein S7p/S5e DDD63_03595 PF03144 Elongation factor Tu domain 2 DDD63_03595 PF14492 Elongation Factor G, domain II DDD63_03595 PF03764 Elongation factor G, domain IV DDD63_03595 PF00009 Elongation factor Tu GTP binding domain DDD63_03595 PF00679 Elongation factor G C-terminus DDD63_03600 PF03144 Elongation factor Tu domain 2 DDD63_03600 PF03143 Elongation factor Tu C-terminal domain DDD63_03600 PF00009 Elongation factor Tu GTP binding domain DDD63_03605 PF01791 DeoC/LacD family aldolase DDD63_03610 PF01380 SIS domain DDD63_03620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_03620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_03625 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDD63_03625 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDD63_03630 PF00392 Bacterial regulatory proteins, gntR family DDD63_03630 PF07702 UTRA domain DDD63_03635 PF00338 Ribosomal protein S10p/S20e DDD63_03640 PF00297 Ribosomal protein L3 DDD63_03645 PF00573 Ribosomal protein L4/L1 family DDD63_03650 PF00276 Ribosomal protein L23 DDD63_03660 PF00203 Ribosomal protein S19 DDD63_03665 PF00237 Ribosomal protein L22p/L17e DDD63_03670 PF07650 KH domain DDD63_03670 PF00189 Ribosomal protein S3, C-terminal domain DDD63_03675 PF00252 Ribosomal protein L16p/L10e DDD63_03680 PF00831 Ribosomal L29 protein DDD63_03685 PF00366 Ribosomal protein S17 DDD63_03695 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DDD63_03700 PF00673 ribosomal L5P family C-terminus DDD63_03700 PF00281 Ribosomal protein L5 DDD63_03705 PF00253 Ribosomal protein S14p/S29e DDD63_03710 PF00410 Ribosomal protein S8 DDD63_03715 PF00347 Ribosomal protein L6 DDD63_03720 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DDD63_03725 PF00333 Ribosomal protein S5, N-terminal domain DDD63_03725 PF03719 Ribosomal protein S5, C-terminal domain DDD63_03730 PF00327 Ribosomal protein L30p/L7e DDD63_03735 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DDD63_03740 PF00344 SecY translocase DDD63_03750 PF00557 Metallopeptidase family M24 DDD63_03755 PF01176 Translation initiation factor 1A / IF-1 DDD63_03760 PF00444 Ribosomal protein L36 DDD63_03765 PF00416 Ribosomal protein S13/S18 DDD63_03770 PF00411 Ribosomal protein S11 DDD63_03775 PF01000 RNA polymerase Rpb3/RpoA insert domain DDD63_03775 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DDD63_03775 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DDD63_03780 PF01196 Ribosomal protein L17 DDD63_03790 PF01416 tRNA pseudouridine synthase DDD63_03800 PF13685 Iron-containing alcohol dehydrogenase DDD63_03805 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_03805 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_03810 PF00572 Ribosomal protein L13 DDD63_03815 PF00380 Ribosomal protein S9/S16 DDD63_03820 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDD63_03820 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDD63_03820 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDD63_03820 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDD63_03825 PF06259 Alpha/beta hydrolase DDD63_03840 PF00485 Phosphoribulokinase / Uridine kinase family DDD63_03850 PF01380 SIS domain DDD63_03855 PF03853 YjeF-related protein N-terminus DDD63_03860 PF00842 Alanine racemase, C-terminal domain DDD63_03860 PF01168 Alanine racemase, N-terminal domain DDD63_03865 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DDD63_03875 PF00814 Glycoprotease family DDD63_03890 PF02910 Fumarate reductase flavoprotein C-term DDD63_03890 PF00890 FAD binding domain DDD63_03895 PF13183 4Fe-4S dicluster domain DDD63_03895 PF13085 2Fe-2S iron-sulfur cluster binding domain DDD63_03900 PF00814 Glycoprotease family DDD63_03910 PF00166 Chaperonin 10 Kd subunit DDD63_03915 PF00144 Beta-lactamase DDD63_03920 PF00571 CBS domain DDD63_03920 PF00478 IMP dehydrogenase / GMP reductase domain DDD63_03925 PF00929 Exonuclease DDD63_03950 PF06259 Alpha/beta hydrolase DDD63_03980 PF00795 Carbon-nitrogen hydrolase DDD63_03980 PF02540 NAD synthase DDD63_03990 PF01869 BadF/BadG/BcrA/BcrD ATPase family DDD63_04015 PF16859 Tetracyclin repressor-like, C-terminal domain DDD63_04015 PF00440 Bacterial regulatory proteins, tetR family DDD63_04020 PF00005 ABC transporter DDD63_04020 PF13732 Domain of unknown function (DUF4162) DDD63_04040 PF00474 Sodium:solute symporter family DDD63_04060 PF07859 alpha/beta hydrolase fold DDD63_04070 PF02515 CoA-transferase family III DDD63_04075 PF00501 AMP-binding enzyme DDD63_04075 PF13193 AMP-binding enzyme C-terminal domain DDD63_04085 PF00083 Sugar (and other) transporter DDD63_04100 PF00766 Electron transfer flavoprotein FAD-binding domain DDD63_04100 PF01012 Electron transfer flavoprotein domain DDD63_04105 PF01494 FAD binding domain DDD63_04115 PF00871 Acetokinase family DDD63_04120 PF07085 DRTGG domain DDD63_04120 PF01515 Phosphate acetyl/butaryl transferase DDD63_04135 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DDD63_04135 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DDD63_04140 PF00561 alpha/beta hydrolase fold DDD63_04180 PF02384 N-6 DNA Methylase DDD63_04195 PF00589 Phage integrase family DDD63_04195 PF02899 Phage integrase, N-terminal SAM-like domain DDD63_04200 PF00561 alpha/beta hydrolase fold DDD63_04220 PF00144 Beta-lactamase DDD63_04300 PF00753 Metallo-beta-lactamase superfamily DDD63_04340 PF00549 CoA-ligase DDD63_04340 PF02629 CoA binding domain DDD63_04360 PF00005 ABC transporter DDD63_04370 PF00072 Response regulator receiver domain DDD63_04370 PF00196 Bacterial regulatory proteins, luxR family DDD63_04380 PF00551 Formyl transferase DDD63_04385 PF01808 AICARFT/IMPCHase bienzyme DDD63_04385 PF02142 MGS-like domain DDD63_04395 PF00571 CBS domain DDD63_04395 PF01595 Cyclin M transmembrane N-terminal domain DDD63_04395 PF03471 Transporter associated domain DDD63_04400 PF00180 Isocitrate/isopropylmalate dehydrogenase DDD63_04405 PF00375 Sodium:dicarboxylate symporter family DDD63_04410 PF00365 Phosphofructokinase DDD63_04415 PF02806 Alpha amylase, C-terminal all-beta domain DDD63_04415 PF00128 Alpha amylase, catalytic domain DDD63_04415 PF03714 Bacterial pullanase-associated domain DDD63_04420 PF00342 Phosphoglucose isomerase DDD63_04425 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DDD63_04425 PF00056 lactate/malate dehydrogenase, NAD binding domain DDD63_04430 PF02237 Biotin protein ligase C terminal domain DDD63_04430 PF03099 Biotin/lipoate A/B protein ligase family DDD63_04430 PF08279 HTH domain DDD63_04440 PF01039 Carboxyl transferase domain DDD63_04450 PF01648 4'-phosphopantetheinyl transferase superfamily DDD63_04455 PF00464 Serine hydroxymethyltransferase DDD63_04460 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DDD63_04460 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DDD63_04470 PF01050 Mannose-6-phosphate isomerase DDD63_04470 PF00483 Nucleotidyl transferase DDD63_04475 PF02608 ABC transporter substrate-binding protein PnrA-like DDD63_04495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDD63_04500 PF02885 Glycosyl transferase family, helical bundle domain DDD63_04500 PF00591 Glycosyl transferase family, a/b domain DDD63_04500 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DDD63_04505 PF01791 DeoC/LacD family aldolase DDD63_04515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDD63_04515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDD63_04515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDD63_04515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDD63_04525 PF03641 Possible lysine decarboxylase DDD63_04535 PF01596 O-methyltransferase DDD63_04540 PF01883 Iron-sulfur cluster assembly protein DDD63_04540 PF10609 NUBPL iron-transfer P-loop NTPase DDD63_04550 PF03448 MgtE intracellular N domain DDD63_04550 PF01769 Divalent cation transporter DDD63_04550 PF00571 CBS domain DDD63_04560 PF01497 Periplasmic binding protein DDD63_04565 PF01032 FecCD transport family DDD63_04570 PF01032 FecCD transport family DDD63_04575 PF00005 ABC transporter DDD63_04585 PF01914 MarC family integral membrane protein DDD63_04590 PF00270 DEAD/DEAH box helicase DDD63_04590 PF00271 Helicase conserved C-terminal domain DDD63_04600 PF00535 Glycosyl transferase family 2 DDD63_04610 PF02350 UDP-N-acetylglucosamine 2-epimerase DDD63_04625 PF00580 UvrD/REP helicase N-terminal domain DDD63_04625 PF13361 UvrD-like helicase C-terminal domain DDD63_04630 PF00580 UvrD/REP helicase N-terminal domain DDD63_04630 PF13361 UvrD-like helicase C-terminal domain DDD63_04640 PF00437 Type II/IV secretion system protein DDD63_04675 PF03462 PCRF domain DDD63_04675 PF00472 RF-1 domain DDD63_04680 PF00005 ABC transporter DDD63_04685 PF18075 FtsX extracellular domain DDD63_04685 PF02687 FtsX-like permease family DDD63_04695 PF04225 Opacity-associated protein A LysM-like domain DDD63_04695 PF01551 Peptidase family M23 DDD63_04700 PF01668 SmpB protein DDD63_04710 PF00583 Acetyltransferase (GNAT) family DDD63_04730 PF00216 Bacterial DNA-binding protein DDD63_04745 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DDD63_04745 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DDD63_04750 PF02617 ATP-dependent Clp protease adaptor protein ClpS DDD63_04760 PF01177 Asp/Glu/Hydantoin racemase DDD63_04765 PF12706 Beta-lactamase superfamily domain DDD63_04775 PF01725 Ham1 family DDD63_04800 PF02515 CoA-transferase family III DDD63_04805 PF00501 AMP-binding enzyme DDD63_04805 PF13193 AMP-binding enzyme C-terminal domain DDD63_04810 PF07690 Major Facilitator Superfamily DDD63_04810 PF00083 Sugar (and other) transporter DDD63_04815 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDD63_04815 PF02770 Acyl-CoA dehydrogenase, middle domain DDD63_04815 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDD63_04820 PF17938 Tetracyclin repressor-like, C-terminal domain DDD63_04820 PF00440 Bacterial regulatory proteins, tetR family DDD63_04830 PF13732 Domain of unknown function (DUF4162) DDD63_04830 PF00005 ABC transporter DDD63_04840 PF00155 Aminotransferase class I and II DDD63_04855 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDD63_04880 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_04885 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_04890 PF01547 Bacterial extracellular solute-binding protein DDD63_04920 PF00330 Aconitase family (aconitate hydratase) DDD63_04925 PF00694 Aconitase C-terminal domain DDD63_04945 PF07478 D-ala D-ala ligase C-terminus DDD63_04945 PF01820 D-ala D-ala ligase N-terminus DDD63_04950 PF02769 AIR synthase related protein, C-terminal domain DDD63_04950 PF00586 AIR synthase related protein, N-terminal domain DDD63_04970 PF06259 Alpha/beta hydrolase DDD63_04975 PF00830 Ribosomal L28 family DDD63_04980 PF00270 DEAD/DEAH box helicase DDD63_04980 PF00271 Helicase conserved C-terminal domain DDD63_04980 PF17191 RecG wedge domain DDD63_04990 PF01467 Cytidylyltransferase-like DDD63_05000 PF02620 Large ribosomal RNA subunit accumulation protein YceD DDD63_05005 PF14622 Ribonuclease-III-like DDD63_05005 PF00035 Double-stranded RNA binding motif DDD63_05010 PF06827 Zinc finger found in FPG and IleRS DDD63_05010 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DDD63_05010 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DDD63_05015 PF00072 Response regulator receiver domain DDD63_05015 PF00196 Bacterial regulatory proteins, luxR family DDD63_05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_05020 PF13492 GAF domain DDD63_05020 PF13185 GAF domain DDD63_05020 PF07730 Histidine kinase DDD63_05025 PF00005 ABC transporter DDD63_05025 PF00664 ABC transporter transmembrane region DDD63_05030 PF00005 ABC transporter DDD63_05030 PF00664 ABC transporter transmembrane region DDD63_05035 PF02322 Cytochrome bd terminal oxidase subunit II DDD63_05040 PF01654 Cytochrome bd terminal oxidase subunit I DDD63_05045 PF10150 Ribonuclease E/G family DDD63_05050 PF00829 Ribosomal prokaryotic L21 protein DDD63_05055 PF01016 Ribosomal L27 protein DDD63_05065 PF01472 PUA domain DDD63_05065 PF00696 Amino acid kinase family DDD63_05090 PF00085 Thioredoxin DDD63_05095 PF00171 Aldehyde dehydrogenase family DDD63_05100 PF01467 Cytidylyltransferase-like DDD63_05115 PF00300 Histidine phosphatase superfamily (branch 1) DDD63_05125 PF00365 Phosphofructokinase DDD63_05130 PF17760 UvrA interaction domain DDD63_05130 PF17755 UvrA DNA-binding domain DDD63_05140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDD63_05140 PF03466 LysR substrate binding domain DDD63_05150 PF00248 Aldo/keto reductase family DDD63_05160 PF07690 Major Facilitator Superfamily DDD63_05165 PF00933 Glycosyl hydrolase family 3 N terminal domain DDD63_05165 PF14310 Fibronectin type III-like domain DDD63_05165 PF01915 Glycosyl hydrolase family 3 C-terminal domain DDD63_05170 PF08240 Alcohol dehydrogenase GroES-like domain DDD63_05170 PF00107 Zinc-binding dehydrogenase DDD63_05185 PF02661 Fic/DOC family DDD63_05185 PF13784 Fic/DOC family N-terminal DDD63_05215 PF01381 Helix-turn-helix DDD63_05225 PF00196 Bacterial regulatory proteins, luxR family DDD63_05225 PF00072 Response regulator receiver domain DDD63_05230 PF00144 Beta-lactamase DDD63_05235 PF07730 Histidine kinase DDD63_05240 PF00005 ABC transporter DDD63_05255 PF00391 PEP-utilising enzyme, mobile domain DDD63_05255 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DDD63_05275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DDD63_05275 PF00925 GTP cyclohydrolase II DDD63_05280 PF00885 6,7-dimethyl-8-ribityllumazine synthase DDD63_05295 PF02126 Phosphotriesterase family DDD63_05300 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DDD63_05305 PF01261 Xylose isomerase-like TIM barrel DDD63_05310 PF00596 Class II Aldolase and Adducin N-terminal domain DDD63_05320 PF00083 Sugar (and other) transporter DDD63_05360 PF07732 Multicopper oxidase DDD63_05365 PF03180 NLPA lipoprotein DDD63_05370 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_05375 PF09383 NIL domain DDD63_05375 PF00005 ABC transporter DDD63_05385 PF01048 Phosphorylase superfamily DDD63_05405 PF00005 ABC transporter DDD63_05410 PF01032 FecCD transport family DDD63_05415 PF01032 FecCD transport family DDD63_05430 PF01230 HIT domain DDD63_05440 PF10531 SLBB domain DDD63_05455 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DDD63_05455 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DDD63_05455 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DDD63_05460 PF02233 NAD(P) transhydrogenase beta subunit DDD63_05470 PF01649 Ribosomal protein S20 DDD63_05490 PF00679 Elongation factor G C-terminus DDD63_05490 PF06421 GTP-binding protein LepA C-terminus DDD63_05490 PF00009 Elongation factor Tu GTP binding domain DDD63_05495 PF02390 Putative methyltransferase DDD63_05500 PF04055 Radical SAM superfamily DDD63_05515 PF08220 DeoR-like helix-turn-helix domain DDD63_05515 PF01628 HrcA protein C terminal domain DDD63_05520 PF01556 DnaJ C terminal domain DDD63_05520 PF00684 DnaJ central domain DDD63_05520 PF00226 DnaJ domain DDD63_05525 PF04452 RNA methyltransferase DDD63_05530 PF02562 PhoH-like protein DDD63_05535 PF02130 Uncharacterized protein family UPF0054 DDD63_05540 PF03471 Transporter associated domain DDD63_05540 PF01595 Cyclin M transmembrane N-terminal domain DDD63_05540 PF00571 CBS domain DDD63_05545 PF01926 50S ribosome-binding GTPase DDD63_05545 PF07650 KH domain DDD63_05565 PF00069 Protein kinase domain DDD63_05565 PF03793 PASTA domain DDD63_05570 PF13191 AAA ATPase domain DDD63_05570 PF00069 Protein kinase domain DDD63_05575 PF00682 HMGL-like DDD63_05575 PF08502 LeuA allosteric (dimerisation) domain DDD63_05580 PF11967 Recombination protein O N terminal DDD63_05580 PF02565 Recombination protein O C terminal DDD63_05585 PF01255 Putative undecaprenyl diphosphate synthase DDD63_05590 PF00815 Histidinol dehydrogenase DDD63_05605 PF00155 Aminotransferase class I and II DDD63_05610 PF00475 Imidazoleglycerol-phosphate dehydratase DDD63_05620 PF00117 Glutamine amidotransferase class-I DDD63_05625 PF00977 Histidine biosynthesis protein DDD63_05635 PF00707 Translation initiation factor IF-3, C-terminal domain DDD63_05635 PF05198 Translation initiation factor IF-3, N-terminal domain DDD63_05640 PF01632 Ribosomal protein L35 DDD63_05645 PF00453 Ribosomal protein L20 DDD63_05650 PF00588 SpoU rRNA Methylase family DDD63_05660 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DDD63_05660 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DDD63_05665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDD63_05670 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDD63_05670 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DDD63_05680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDD63_05685 PF00072 Response regulator receiver domain DDD63_05685 PF00196 Bacterial regulatory proteins, luxR family DDD63_05715 PF01409 tRNA synthetases class II core domain (F) DDD63_05715 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DDD63_05720 PF03483 B3/4 domain DDD63_05720 PF03484 tRNA synthetase B5 domain DDD63_05720 PF03147 Ferredoxin-fold anticodon binding domain DDD63_05720 PF01588 Putative tRNA binding domain DDD63_05720 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DDD63_05725 PF03880 DbpA RNA binding domain DDD63_05725 PF00270 DEAD/DEAH box helicase DDD63_05725 PF00271 Helicase conserved C-terminal domain DDD63_05730 PF07690 Major Facilitator Superfamily DDD63_05735 PF02938 GAD domain DDD63_05735 PF01336 OB-fold nucleic acid binding domain DDD63_05735 PF00152 tRNA synthetases class II (D, K and N) DDD63_05760 PF00082 Subtilase family DDD63_05760 PF02225 PA domain DDD63_05760 PF13860 FlgD Ig-like domain DDD63_05760 PF05922 Peptidase inhibitor I9 DDD63_05770 PF00248 Aldo/keto reductase family DDD63_05775 PF02673 Bacitracin resistance protein BacA DDD63_05780 PF01406 tRNA synthetases class I (C) catalytic domain DDD63_05785 PF13419 Haloacid dehalogenase-like hydrolase DDD63_05790 PF00474 Sodium:solute symporter family DDD63_05800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_05800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_05805 PF04198 Putative sugar-binding domain DDD63_05810 PF04198 Putative sugar-binding domain DDD63_05815 PF00107 Zinc-binding dehydrogenase DDD63_05815 PF08240 Alcohol dehydrogenase GroES-like domain DDD63_05820 PF08704 tRNA methyltransferase complex GCD14 subunit DDD63_05825 PF00004 ATPase family associated with various cellular activities (AAA) DDD63_05825 PF16450 Proteasomal ATPase OB C-terminal domain DDD63_05825 PF17758 Proteasomal ATPase OB N-terminal domain DDD63_05830 PF03136 Pup-ligase protein DDD63_05840 PF03136 Pup-ligase protein DDD63_05855 PF00977 Histidine biosynthesis protein DDD63_05860 PF01502 Phosphoribosyl-AMP cyclohydrolase DDD63_05870 PF00218 Indole-3-glycerol phosphate synthase DDD63_05875 PF00291 Pyridoxal-phosphate dependent enzyme DDD63_05900 PF03861 ANTAR domain DDD63_05900 PF00072 Response regulator receiver domain DDD63_05905 PF03061 Thioesterase superfamily DDD63_05915 PF00575 S1 RNA binding domain DDD63_05925 PF00005 ABC transporter DDD63_05925 PF09383 NIL domain DDD63_05935 PF03180 NLPA lipoprotein DDD63_05940 PF12002 MgsA AAA+ ATPase C terminal DDD63_05940 PF16193 AAA C-terminal domain DDD63_05940 PF00004 ATPase family associated with various cellular activities (AAA) DDD63_05945 PF01479 S4 domain DDD63_05945 PF00163 Ribosomal protein S4/S9 N-terminal domain DDD63_05955 PF02272 DHHA1 domain DDD63_05955 PF01411 tRNA synthetases class II (A) DDD63_05955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDD63_05960 PF03652 Holliday junction resolvase DDD63_05975 PF01264 Chorismate synthase DDD63_05985 PF01761 3-dehydroquinate synthase DDD63_06005 PF08207 Elongation factor P (EF-P) KOW-like domain DDD63_06005 PF09285 Elongation factor P, C-terminal DDD63_06005 PF01132 Elongation factor P (EF-P) OB domain DDD63_06010 PF01029 NusB family DDD63_06015 PF00156 Phosphoribosyl transferase domain DDD63_06020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDD63_06020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDD63_06025 PF01979 Amidohydrolase family DDD63_06035 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DDD63_06035 PF02142 MGS-like domain DDD63_06035 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDD63_06040 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DDD63_06045 PF00625 Guanylate kinase DDD63_06055 PF01192 RNA polymerase Rpb6 DDD63_06060 PF02441 Flavoprotein DDD63_06060 PF04127 DNA / pantothenate metabolism flavoprotein DDD63_06065 PF02773 S-adenosylmethionine synthetase, C-terminal domain DDD63_06065 PF02772 S-adenosylmethionine synthetase, central domain DDD63_06065 PF00438 S-adenosylmethionine synthetase, N-terminal domain DDD63_06080 PF17764 3′ DNA-binding domain (3′BD) DDD63_06085 PF00551 Formyl transferase DDD63_06085 PF02911 Formyl transferase, C-terminal domain DDD63_06090 PF01029 NusB family DDD63_06090 PF01189 16S rRNA methyltransferase RsmB/F DDD63_06095 PF00834 Ribulose-phosphate 3 epimerase family DDD63_06100 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_06105 PF09084 NMT1/THI5 like DDD63_06110 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DDD63_06115 PF08029 HisG, C-terminal domain DDD63_06115 PF01634 ATP phosphoribosyltransferase DDD63_06135 PF00781 Diacylglycerol kinase catalytic domain DDD63_06140 PF08148 DSHCT (NUC185) domain DDD63_06140 PF00270 DEAD/DEAH box helicase DDD63_06140 PF00271 Helicase conserved C-terminal domain DDD63_06145 PF00795 Carbon-nitrogen hydrolase DDD63_06150 PF00535 Glycosyl transferase family 2 DDD63_06155 PF13397 RNA polymerase-binding protein DDD63_06160 PF00005 ABC transporter DDD63_06160 PF02687 FtsX-like permease family DDD63_06160 PF12704 MacB-like periplasmic core domain DDD63_06175 PF00012 Hsp70 protein DDD63_06185 PF13411 MerR HTH family regulatory protein DDD63_06190 PF00376 MerR family regulatory protein DDD63_06195 PF00498 FHA domain DDD63_06225 PF08241 Methyltransferase domain DDD63_06235 PF13302 Acetyltransferase (GNAT) domain DDD63_06250 PF02811 PHP domain DDD63_06250 PF07733 Bacterial DNA polymerase III alpha NTPase domain DDD63_06250 PF14579 Helix-hairpin-helix motif DDD63_06250 PF01336 OB-fold nucleic acid binding domain DDD63_06250 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DDD63_06260 PF11799 impB/mucB/samB family C-terminal domain DDD63_06260 PF00817 impB/mucB/samB family DDD63_06275 PF00083 Sugar (and other) transporter DDD63_06275 PF07690 Major Facilitator Superfamily DDD63_06280 PF00294 pfkB family carbohydrate kinase DDD63_06285 PF01081 KDPG and KHG aldolase DDD63_06290 PF03786 D-mannonate dehydratase (UxuA) DDD63_06295 PF01232 Mannitol dehydrogenase Rossmann domain DDD63_06295 PF08125 Mannitol dehydrogenase C-terminal domain DDD63_06305 PF01161 Phosphatidylethanolamine-binding protein DDD63_06310 PF00588 SpoU rRNA Methylase family DDD63_06320 PF00588 SpoU rRNA Methylase family DDD63_06325 PF01145 SPFH domain / Band 7 family DDD63_06335 PF00005 ABC transporter DDD63_06345 PF00483 Nucleotidyl transferase DDD63_06365 PF00300 Histidine phosphatase superfamily (branch 1) DDD63_06370 PF00005 ABC transporter DDD63_06370 PF12848 ABC transporter DDD63_06375 PF04228 Putative neutral zinc metallopeptidase DDD63_06380 PF01883 Iron-sulfur cluster assembly protein DDD63_06390 PF00266 Aminotransferase class-V DDD63_06395 PF00005 ABC transporter DDD63_06405 PF01458 Uncharacterized protein family (UPF0051) DDD63_06420 PF03358 NADPH-dependent FMN reductase DDD63_06420 PF01566 Natural resistance-associated macrophage protein DDD63_06430 PF06418 CTP synthase N-terminus DDD63_06430 PF00117 Glutamine amidotransferase class-I DDD63_06435 PF03023 Lipid II flippase MurJ DDD63_06445 PF11382 Copper transport outer membrane protein, MctB DDD63_06455 PF02463 RecF/RecN/SMC N terminal domain DDD63_06460 PF01513 ATP-NAD kinase DDD63_06465 PF01728 FtsJ-like methyltransferase DDD63_06465 PF01479 S4 domain DDD63_06470 PF13344 Haloacid dehalogenase-like hydrolase DDD63_06470 PF18407 GCN5-related N-acetyltransferase like domain DDD63_06495 PF00579 tRNA synthetases class I (W and Y) DDD63_06505 PF02245 Methylpurine-DNA glycosylase (MPG) DDD63_06510 PF14698 Argininosuccinate lyase C-terminal DDD63_06510 PF00206 Lyase DDD63_06515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDD63_06515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDD63_06520 PF00881 Nitroreductase family DDD63_06525 PF00764 Arginosuccinate synthase DDD63_06530 PF02863 Arginine repressor, C-terminal domain DDD63_06530 PF01316 Arginine repressor, DNA binding domain DDD63_06535 PF00202 Aminotransferase class-III DDD63_06540 PF00696 Amino acid kinase family DDD63_06545 PF01960 ArgJ family DDD63_06550 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDD63_06550 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDD63_06565 PF13393 Histidyl-tRNA synthetase DDD63_06565 PF03129 Anticodon binding domain DDD63_06575 PF03993 Domain of Unknown Function (DUF349) DDD63_06580 PF04607 Region found in RelA / SpoT proteins DDD63_06580 PF02824 TGS domain DDD63_06580 PF13291 ACT domain DDD63_06585 PF00156 Phosphoribosyl transferase domain DDD63_06590 PF07549 SecD/SecF GG Motif DDD63_06590 PF02355 Protein export membrane protein DDD63_06595 PF07549 SecD/SecF GG Motif DDD63_06595 PF02355 Protein export membrane protein DDD63_06605 PF05491 RuvB C-terminal winged helix domain DDD63_06605 PF17864 RuvB AAA lid domain DDD63_06605 PF05496 Holliday junction DNA helicase RuvB P-loop domain DDD63_06610 PF01330 RuvA N terminal domain DDD63_06610 PF07499 RuvA, C-terminal domain DDD63_06615 PF02075 Crossover junction endodeoxyribonuclease RuvC DDD63_06620 PF01709 Transcriptional regulator DDD63_06625 PF00293 NUDIX domain DDD63_06640 PF13439 Glycosyltransferase Family 4 DDD63_06645 PF03279 Bacterial lipid A biosynthesis acyltransferase DDD63_06655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDD63_06655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDD63_06655 PF03129 Anticodon binding domain DDD63_06685 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDD63_06685 PF00128 Alpha amylase, catalytic domain DDD63_06690 PF00128 Alpha amylase, catalytic domain DDD63_06695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDD63_06695 PF00128 Alpha amylase, catalytic domain DDD63_06705 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_06710 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_06720 PF00356 Bacterial regulatory proteins, lacI family DDD63_06745 PF02779 Transketolase, pyrimidine binding domain DDD63_06745 PF02780 Transketolase, C-terminal domain DDD63_06745 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DDD63_06750 PF02780 Transketolase, C-terminal domain DDD63_06750 PF02779 Transketolase, pyrimidine binding domain DDD63_06750 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DDD63_06760 PF00330 Aconitase family (aconitate hydratase) DDD63_06760 PF00694 Aconitase C-terminal domain DDD63_06765 PF01938 TRAM domain DDD63_06765 PF05958 tRNA (Uracil-5-)-methyltransferase DDD63_06780 PF02080 TrkA-C domain DDD63_06780 PF02254 TrkA-N domain DDD63_06785 PF02080 TrkA-C domain DDD63_06785 PF02254 TrkA-N domain DDD63_06810 PF11268 Protein of unknown function (DUF3071) DDD63_06815 PF00265 Thymidine kinase DDD63_06840 PF00521 DNA gyrase/topoisomerase IV, subunit A DDD63_06840 PF03989 DNA gyrase C-terminal domain, beta-propeller DDD63_06845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_06845 PF01751 Toprim domain DDD63_06845 PF00204 DNA gyrase B DDD63_06845 PF00986 DNA gyrase B subunit, carboxyl terminus DDD63_06855 PF00929 Exonuclease DDD63_06860 PF00140 Sigma-70 factor, region 1.2 DDD63_06860 PF04539 Sigma-70 region 3 DDD63_06860 PF04542 Sigma-70 region 2 DDD63_06860 PF04545 Sigma-70, region 4 DDD63_06880 PF05257 CHAP domain DDD63_06880 PF01476 LysM domain DDD63_06885 PF03793 PASTA domain DDD63_06885 PF00069 Protein kinase domain DDD63_06890 PF01474 Class-II DAHP synthetase family DDD63_06900 PF00365 Phosphofructokinase DDD63_06910 PF00929 Exonuclease DDD63_06910 PF01541 GIY-YIG catalytic domain DDD63_06940 PF08402 TOBE domain DDD63_06940 PF00005 ABC transporter DDD63_06950 PF02885 Glycosyl transferase family, helical bundle domain DDD63_06950 PF00591 Glycosyl transferase family, a/b domain DDD63_06960 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DDD63_06960 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DDD63_06965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDD63_06970 PF01521 Iron-sulphur cluster biosynthesis DDD63_06980 PF07687 Peptidase dimerisation domain DDD63_06980 PF01546 Peptidase family M20/M25/M40 DDD63_06990 PF01180 Dihydroorotate dehydrogenase DDD63_07005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDD63_07005 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDD63_07010 PF02817 e3 binding domain DDD63_07010 PF00364 Biotin-requiring enzyme DDD63_07010 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDD63_07025 PF03951 Glutamine synthetase, beta-Grasp domain DDD63_07025 PF00120 Glutamine synthetase, catalytic domain DDD63_07030 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDD63_07035 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_07045 PF00300 Histidine phosphatase superfamily (branch 1) DDD63_07045 PF00934 PE family DDD63_07050 PF08335 GlnD PII-uridylyltransferase DDD63_07050 PF03710 Glutamate-ammonia ligase adenylyltransferase DDD63_07055 PF03951 Glutamine synthetase, beta-Grasp domain DDD63_07055 PF00120 Glutamine synthetase, catalytic domain DDD63_07065 PF02548 Ketopantoate hydroxymethyltransferase DDD63_07070 PF00557 Metallopeptidase family M24 DDD63_07075 PF00480 ROK family DDD63_07090 PF01784 NIF3 (NGG1p interacting factor 3) DDD63_07100 PF00005 ABC transporter DDD63_07100 PF02687 FtsX-like permease family DDD63_07100 PF12704 MacB-like periplasmic core domain DDD63_07120 PF11253 Protein of unknown function (DUF3052) DDD63_07125 PF17831 Pyruvate dehydrogenase E1 component middle domain DDD63_07125 PF00456 Transketolase, thiamine diphosphate binding domain DDD63_07130 PF00664 ABC transporter transmembrane region DDD63_07130 PF00005 ABC transporter DDD63_07135 PF00005 ABC transporter DDD63_07135 PF00664 ABC transporter transmembrane region DDD63_07150 PF01300 Telomere recombination DDD63_07165 PF01327 Polypeptide deformylase DDD63_07205 PF02028 BCCT, betaine/carnitine/choline family transporter DDD63_07215 PF01966 HD domain DDD63_07215 PF13286 Phosphohydrolase-associated domain DDD63_07220 PF01207 Dihydrouridine synthase (Dus) DDD63_07240 PF06259 Alpha/beta hydrolase DDD63_07250 PF01297 Zinc-uptake complex component A periplasmic DDD63_07255 PF00005 ABC transporter DDD63_07260 PF00950 ABC 3 transport family DDD63_07265 PF01475 Ferric uptake regulator family DDD63_07280 PF13673 Acetyltransferase (GNAT) domain DDD63_07285 PF00849 RNA pseudouridylate synthase DDD63_07290 PF01252 Signal peptidase (SPase) II DDD63_07305 PF04472 Cell division protein SepF DDD63_07325 PF08245 Mur ligase middle domain DDD63_07325 PF01225 Mur ligase family, catalytic domain DDD63_07325 PF02875 Mur ligase family, glutamate ligase domain DDD63_07330 PF04101 Glycosyltransferase family 28 C-terminal domain DDD63_07330 PF03033 Glycosyltransferase family 28 N-terminal domain DDD63_07335 PF01098 Cell cycle protein DDD63_07345 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DDD63_07345 PF00953 Glycosyl transferase family 4 DDD63_07370 PF01795 MraW methylase family DDD63_07375 PF02381 MraZ protein, putative antitoxin-like DDD63_07385 PF11799 impB/mucB/samB family C-terminal domain DDD63_07385 PF00817 impB/mucB/samB family DDD63_07405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDD63_07405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDD63_07455 PF00501 AMP-binding enzyme DDD63_07455 PF13193 AMP-binding enzyme C-terminal domain DDD63_07460 PF03477 ATP cone domain DDD63_07470 PF00717 Peptidase S24-like DDD63_07470 PF01726 LexA DNA binding domain DDD63_07480 PF13307 Helicase C-terminal domain DDD63_07485 PF01926 50S ribosome-binding GTPase DDD63_07485 PF13167 GTP-binding GTPase N-terminal DDD63_07485 PF16360 GTP-binding GTPase Middle Region DDD63_07490 PF05175 Methyltransferase small domain DDD63_07490 PF08468 Methyltransferase small domain N-terminal DDD63_07495 PF05675 Protein of unknown function (DUF817) DDD63_07505 PF00919 Uncharacterized protein family UPF0004 DDD63_07505 PF04055 Radical SAM superfamily DDD63_07510 PF02631 RecX family DDD63_07530 PF00994 Probable molybdopterin binding domain DDD63_07530 PF02464 Competence-damaged protein DDD63_07530 PF18146 Damage-inducible protein CinA KH domain DDD63_07550 PF01048 Phosphorylase superfamily DDD63_07555 PF12706 Beta-lactamase superfamily domain DDD63_07555 PF17770 Ribonuclease J C-terminal domain DDD63_07555 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DDD63_07560 PF00701 Dihydrodipicolinate synthetase family DDD63_07570 PF05173 Dihydrodipicolinate reductase, C-terminus DDD63_07570 PF01113 Dihydrodipicolinate reductase, N-terminus DDD63_07575 PF05193 Peptidase M16 inactive domain DDD63_07575 PF00675 Insulinase (Peptidase family M16) DDD63_07580 PF00575 S1 RNA binding domain DDD63_07580 PF00013 KH domain DDD63_07580 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DDD63_07580 PF01138 3' exoribonuclease family, domain 1 DDD63_07585 PF00312 Ribosomal protein S15 DDD63_07590 PF01687 Riboflavin kinase DDD63_07590 PF06574 FAD synthetase DDD63_07600 PF09142 tRNA Pseudouridine synthase II, C terminal DDD63_07600 PF01509 TruB family pseudouridylate synthase (N terminal domain) DDD63_07600 PF16198 tRNA pseudouridylate synthase B C-terminal domain DDD63_07605 PF02033 Ribosome-binding factor A DDD63_07610 PF11987 Translation-initiation factor 2 DDD63_07610 PF00009 Elongation factor Tu GTP binding domain DDD63_07610 PF04760 Translation initiation factor IF-2, N-terminal region DDD63_07610 PF11987 Translation-initiation factor 2 DDD63_07610 PF00009 Elongation factor Tu GTP binding domain DDD63_07610 PF04760 Translation initiation factor IF-2, N-terminal region DDD63_07625 PF08529 NusA N-terminal domain DDD63_07625 PF13184 NusA-like KH domain DDD63_07630 PF02576 RimP N-terminal domain DDD63_07630 PF17384 RimP C-terminal SH3 domain DDD63_07690 PF03129 Anticodon binding domain DDD63_07690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDD63_07690 PF04073 Aminoacyl-tRNA editing domain DDD63_07705 PF04551 GcpE protein DDD63_07740 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DDD63_07740 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DDD63_07740 PF13288 DXP reductoisomerase C-terminal domain DDD63_07755 PF04055 Radical SAM superfamily DDD63_07765 PF01765 Ribosome recycling factor DDD63_07785 PF03352 Methyladenine glycosylase DDD63_07795 PF05167 Uncharacterised ACR (DUF711) DDD63_07815 PF00318 Ribosomal protein S2 DDD63_07820 PF01551 Peptidase family M23 DDD63_07825 PF02899 Phage integrase, N-terminal SAM-like domain DDD63_07825 PF00589 Phage integrase family DDD63_07830 PF17782 DprA winged helix domain DDD63_07830 PF02481 DNA recombination-mediator protein A DDD63_07835 PF13335 Magnesium chelatase, subunit ChlI C-terminal DDD63_07835 PF01078 Magnesium chelatase, subunit ChlI DDD63_07840 PF02021 Uncharacterised protein family UPF0102 DDD63_07845 PF10611 Protein of unknown function (DUF2469) DDD63_07850 PF01351 Ribonuclease HII DDD63_07855 PF10502 Signal peptidase, peptidase S26 DDD63_07860 PF01245 Ribosomal protein L19 DDD63_07865 PF01746 tRNA (Guanine-1)-methyltransferase DDD63_07870 PF05239 PRC-barrel domain DDD63_07870 PF01782 RimM N-terminal domain DDD63_07880 PF00886 Ribosomal protein S16 DDD63_07885 PF01545 Cation efflux family DDD63_07885 PF16916 Dimerisation domain of Zinc Transporter DDD63_07905 PF03030 Inorganic H+ pyrophosphatase DDD63_07940 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_07950 PF00005 ABC transporter DDD63_07950 PF00571 CBS domain DDD63_07960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDD63_08010 PF01926 50S ribosome-binding GTPase DDD63_08010 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DDD63_08015 PF02224 Cytidylate kinase DDD63_08020 PF01479 S4 domain DDD63_08020 PF00849 RNA pseudouridylate synthase DDD63_08025 PF04079 Segregation and condensation complex subunit ScpB DDD63_08030 PF02616 Segregation and condensation protein ScpA DDD63_08035 PF13614 AAA domain DDD63_08045 PF00456 Transketolase, thiamine diphosphate binding domain DDD63_08045 PF02779 Transketolase, pyrimidine binding domain DDD63_08045 PF02780 Transketolase, C-terminal domain DDD63_08050 PF03840 Preprotein translocase SecG subunit DDD63_08055 PF00121 Triosephosphate isomerase DDD63_08060 PF00162 Phosphoglycerate kinase DDD63_08065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDD63_08065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DDD63_08070 PF02650 WhiA C-terminal HTH domain DDD63_08070 PF10298 WhiA N-terminal LAGLIDADG-like domain DDD63_08070 PF14527 WhiA LAGLIDADG-like domain DDD63_08075 PF01933 Uncharacterised protein family UPF0052 DDD63_08100 PF03741 Integral membrane protein TerC family DDD63_08105 PF00271 Helicase conserved C-terminal domain DDD63_08105 PF12344 Ultra-violet resistance protein B DDD63_08105 PF04851 Type III restriction enzyme, res subunit DDD63_08105 PF02151 UvrB/uvrC motif DDD63_08105 PF17757 UvrB interaction domain DDD63_08110 PF00004 ATPase family associated with various cellular activities (AAA) DDD63_08110 PF01434 Peptidase family M41 DDD63_08110 PF17862 AAA+ lid domain DDD63_08115 PF01121 Dephospho-CoA kinase DDD63_08120 PF00248 Aldo/keto reductase family DDD63_08125 PF02502 Ribose/Galactose Isomerase DDD63_08135 PF01925 Sulfite exporter TauE/SafE DDD63_08140 PF01979 Amidohydrolase family DDD63_08145 PF02881 SRP54-type protein, helical bundle domain DDD63_08145 PF02978 Signal peptide binding domain DDD63_08145 PF00448 SRP54-type protein, GTPase domain DDD63_08160 PF06470 SMC proteins Flexible Hinge Domain DDD63_08160 PF02463 RecF/RecN/SMC N terminal domain DDD63_08165 PF05524 PEP-utilising enzyme, N-terminal DDD63_08165 PF00391 PEP-utilising enzyme, mobile domain DDD63_08165 PF03610 PTS system fructose IIA component DDD63_08165 PF00381 PTS HPr component phosphorylation site DDD63_08170 PF02734 DAK2 domain DDD63_08175 PF02733 Dak1 domain DDD63_08180 PF00334 Nucleoside diphosphate kinase DDD63_08185 PF08245 Mur ligase middle domain DDD63_08185 PF02875 Mur ligase family, glutamate ligase domain DDD63_08190 PF08264 Anticodon-binding domain of tRNA DDD63_08190 PF00133 tRNA synthetases class I (I, L, M and V) DDD63_08200 PF00106 short chain dehydrogenase DDD63_08205 PF03807 NADP oxidoreductase coenzyme F420-dependent DDD63_08205 PF14748 Pyrroline-5-carboxylate reductase dimerisation DDD63_08215 PF00501 AMP-binding enzyme DDD63_08220 PF02153 Prephenate dehydrogenase DDD63_08220 PF01817 Chorismate mutase type II DDD63_08225 PF07724 AAA domain (Cdc48 subfamily) DDD63_08225 PF10431 C-terminal, D2-small domain, of ClpB protein DDD63_08225 PF06689 ClpX C4-type zinc finger DDD63_08230 PF00574 Clp protease DDD63_08235 PF00574 Clp protease DDD63_08265 PF18393 MotY N-terminal domain DDD63_08265 PF00691 OmpA family DDD63_08290 PF03176 MMPL family DDD63_08320 PF01783 Ribosomal L32p protein family DDD63_08325 PF09186 Domain of unknown function (DUF1949) DDD63_08325 PF01205 Uncharacterized protein family UPF0029 DDD63_08330 PF00291 Pyridoxal-phosphate dependent enzyme DDD63_08335 PF00132 Bacterial transferase hexapeptide (six repeats) DDD63_08345 PF02502 Ribose/Galactose Isomerase DDD63_08380 PF01433 Peptidase family M1 domain DDD63_08380 PF11838 ERAP1-like C-terminal domain DDD63_08385 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDD63_08390 PF00367 phosphotransferase system, EIIB DDD63_08390 PF02378 Phosphotransferase system, EIIC DDD63_08395 PF02446 4-alpha-glucanotransferase DDD63_08405 PF04055 Radical SAM superfamily DDD63_08410 PF02901 Pyruvate formate lyase-like DDD63_08410 PF01228 Glycine radical DDD63_08415 PF01228 Glycine radical DDD63_08415 PF02901 Pyruvate formate lyase-like DDD63_08445 PF12848 ABC transporter DDD63_08445 PF00005 ABC transporter DDD63_08465 PF01926 50S ribosome-binding GTPase DDD63_08465 PF12631 MnmE helical domain DDD63_08465 PF10396 GTP-binding protein TrmE N-terminus DDD63_08480 PF00929 Exonuclease DDD63_08485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDD63_08495 PF00005 ABC transporter DDD63_08515 PF00083 Sugar (and other) transporter DDD63_08520 PF00294 pfkB family carbohydrate kinase DDD63_08525 PF07690 Major Facilitator Superfamily DDD63_08535 PF01694 Rhomboid family DDD63_08540 PF00677 Lumazine binding domain DDD63_08545 PF02566 OsmC-like protein DDD63_08605 PF13166 AAA domain DDD63_08645 PF02687 FtsX-like permease family DDD63_08645 PF00005 ABC transporter DDD63_08645 PF12704 MacB-like periplasmic core domain DDD63_08650 PF00005 ABC transporter DDD63_08650 PF02687 FtsX-like permease family DDD63_08650 PF12704 MacB-like periplasmic core domain DDD63_08655 PF07730 Histidine kinase DDD63_08655 PF17200 Single Cache domain 2 DDD63_08660 PF00072 Response regulator receiver domain DDD63_08660 PF00196 Bacterial regulatory proteins, luxR family DDD63_08670 PF08148 DSHCT (NUC185) domain DDD63_08670 PF00270 DEAD/DEAH box helicase DDD63_08670 PF00271 Helicase conserved C-terminal domain DDD63_08675 PF01168 Alanine racemase, N-terminal domain DDD63_08685 PF08502 LeuA allosteric (dimerisation) domain DDD63_08685 PF00682 HMGL-like DDD63_08690 PF01063 Amino-transferase class IV DDD63_08695 PF00180 Isocitrate/isopropylmalate dehydrogenase DDD63_08715 PF02698 DUF218 domain DDD63_08720 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DDD63_08720 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DDD63_08725 PF01842 ACT domain DDD63_08725 PF10369 Small subunit of acetolactate synthase DDD63_08730 PF00205 Thiamine pyrophosphate enzyme, central domain DDD63_08730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDD63_08730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDD63_08740 PF06826 Predicted Permease Membrane Region DDD63_08740 PF02080 TrkA-C domain DDD63_08745 PF00920 Dehydratase family DDD63_08750 PF00005 ABC transporter DDD63_08750 PF00664 ABC transporter transmembrane region DDD63_08755 PF00664 ABC transporter transmembrane region DDD63_08755 PF00005 ABC transporter DDD63_08765 PF00005 ABC transporter DDD63_08770 PF01032 FecCD transport family DDD63_08810 PF02934 GatB/GatE catalytic domain DDD63_08810 PF02637 GatB domain DDD63_08815 PF01425 Amidase DDD63_08820 PF02686 Glu-tRNAGln amidotransferase C subunit DDD63_08825 PF13091 PLD-like domain DDD63_08825 PF13396 Phospholipase_D-nuclease N-terminal DDD63_08835 PF02586 SOS response associated peptidase (SRAP) DDD63_08840 PF02467 Transcription factor WhiB DDD63_08845 PF12282 Signal transduction histidine kinase DDD63_08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_08845 PF07568 Histidine kinase DDD63_08855 PF00011 Hsp20/alpha crystallin family DDD63_08860 PF00303 Thymidylate synthase DDD63_08865 PF00186 Dihydrofolate reductase DDD63_08875 PF00005 ABC transporter DDD63_08875 PF00664 ABC transporter transmembrane region DDD63_08890 PF10415 Fumarase C C-terminus DDD63_08890 PF00206 Lyase DDD63_08925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_08925 PF00183 Hsp90 protein DDD63_08940 PF02899 Phage integrase, N-terminal SAM-like domain DDD63_08940 PF00589 Phage integrase family DDD63_08975 PF01551 Peptidase family M23 DDD63_08975 PF10145 Phage-related minor tail protein DDD63_08975 PF01464 Transglycosylase SLT domain DDD63_09045 PF03699 Uncharacterised protein family (UPF0182) DDD63_09055 PF05362 Lon protease (S16) C-terminal proteolytic domain DDD63_09055 PF13180 PDZ domain DDD63_09075 PF00570 HRDC domain DDD63_09075 PF00580 UvrD/REP helicase N-terminal domain DDD63_09075 PF13361 UvrD-like helicase C-terminal domain DDD63_09080 PF10437 Bacterial lipoate protein ligase C-terminus DDD63_09080 PF03099 Biotin/lipoate A/B protein ligase family DDD63_09085 PF09297 NADH pyrophosphatase zinc ribbon domain DDD63_09085 PF00293 NUDIX domain DDD63_09085 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DDD63_09090 PF18390 Glycogen debranching enzyme C-terminal domain DDD63_09090 PF00128 Alpha amylase, catalytic domain DDD63_09090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDD63_09095 PF00579 tRNA synthetases class I (W and Y) DDD63_09110 PF18085 Maltokinase N-terminal cap domain DDD63_09110 PF01636 Phosphotransferase enzyme family DDD63_09115 PF02806 Alpha amylase, C-terminal all-beta domain DDD63_09115 PF00128 Alpha amylase, catalytic domain DDD63_09115 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDD63_09120 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_09125 PF14785 Maltose transport system permease protein MalF P2 domain DDD63_09125 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_09145 PF00085 Thioredoxin DDD63_09175 PF01939 Endonuclease NucS DDD63_09185 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DDD63_09190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDD63_09190 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDD63_09200 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDD63_09200 PF00306 ATP synthase alpha/beta chain, C terminal domain DDD63_09200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDD63_09205 PF00213 ATP synthase delta (OSCP) subunit DDD63_09210 PF00430 ATP synthase B/B' CF(0) DDD63_09215 PF00137 ATP synthase subunit C DDD63_09220 PF00119 ATP synthase A chain DDD63_09230 PF00953 Glycosyl transferase family 4 DDD63_09235 PF01300 Telomere recombination DDD63_09240 PF17827 PrmC N-terminal domain DDD63_09240 PF13649 Methyltransferase domain DDD63_09245 PF00472 RF-1 domain DDD63_09245 PF03462 PCRF domain DDD63_09250 PF01197 Ribosomal protein L31 DDD63_09255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDD63_09255 PF07497 Rho termination factor, RNA-binding domain DDD63_09255 PF07498 Rho termination factor, N-terminal domain DDD63_09260 PF00288 GHMP kinases N terminal domain DDD63_09265 PF00742 Homoserine dehydrogenase DDD63_09265 PF03447 Homoserine dehydrogenase, NAD binding domain DDD63_09265 PF01842 ACT domain DDD63_09270 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDD63_09270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDD63_09275 PF08501 Shikimate dehydrogenase substrate binding domain DDD63_09275 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DDD63_09280 PF07690 Major Facilitator Superfamily DDD63_09285 PF01487 Type I 3-dehydroquinase DDD63_09290 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DDD63_09290 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DDD63_09295 PF00750 tRNA synthetases class I (R) DDD63_09295 PF05746 DALR anticodon binding domain DDD63_09295 PF03485 Arginyl tRNA synthetase N terminal domain DDD63_09305 PF03009 Glycerophosphoryl diester phosphodiesterase family DDD63_09310 PF01551 Peptidase family M23 DDD63_09310 PF10145 Phage-related minor tail protein DDD63_09310 PF01464 Transglycosylase SLT domain DDD63_09330 PF12704 MacB-like periplasmic core domain DDD63_09330 PF00005 ABC transporter DDD63_09330 PF02687 FtsX-like permease family DDD63_09355 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDD63_09370 PF12320 Type 5 capsule protein repressor C-terminal domain DDD63_09370 PF00149 Calcineurin-like phosphoesterase DDD63_09375 PF13476 AAA domain DDD63_09380 PF13476 AAA domain DDD63_09385 PF13476 AAA domain DDD63_09425 PF07516 SecA Wing and Scaffold domain DDD63_09425 PF07517 SecA DEAD-like domain DDD63_09425 PF01043 SecA preprotein cross-linking domain DDD63_09430 PF02872 5'-nucleotidase, C-terminal domain DDD63_09430 PF00149 Calcineurin-like phosphoesterase DDD63_09440 PF00361 Proton-conducting membrane transporter DDD63_09445 PF00361 Proton-conducting membrane transporter DDD63_09450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DDD63_09450 PF00361 Proton-conducting membrane transporter DDD63_09455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DDD63_09460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DDD63_09465 PF12838 4Fe-4S dicluster domain DDD63_09470 PF00146 NADH dehydrogenase DDD63_09475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DDD63_09475 PF00384 Molybdopterin oxidoreductase DDD63_09475 PF01568 Molydopterin dinucleotide binding domain DDD63_09480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DDD63_09480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DDD63_09480 PF10531 SLBB domain DDD63_09490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DDD63_09495 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DDD63_09500 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DDD63_09505 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DDD63_09510 PF01494 FAD binding domain DDD63_09515 PF01209 ubiE/COQ5 methyltransferase family DDD63_09540 PF00378 Enoyl-CoA hydratase/isomerase DDD63_09545 PF00501 AMP-binding enzyme DDD63_09545 PF13193 AMP-binding enzyme C-terminal domain DDD63_09550 PF01040 UbiA prenyltransferase family DDD63_09575 PF12728 Helix-turn-helix domain DDD63_09580 PF02386 Cation transport protein DDD63_09590 PF18073 Rubredoxin metal binding domain DDD63_09590 PF06745 KaiC DDD63_09600 PF10576 Iron-sulfur binding domain of endonuclease III DDD63_09600 PF00633 Helix-hairpin-helix motif DDD63_09600 PF00730 HhH-GPD superfamily base excision DNA repair protein DDD63_09615 PF00583 Acetyltransferase (GNAT) family DDD63_09625 PF01266 FAD dependent oxidoreductase DDD63_09625 PF04324 BFD-like [2Fe-2S] binding domain DDD63_09630 PF00890 FAD binding domain DDD63_09635 PF13183 4Fe-4S dicluster domain DDD63_09635 PF02754 Cysteine-rich domain DDD63_09650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DDD63_09650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DDD63_09655 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_09655 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_09665 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_09665 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_09670 PF00005 ABC transporter DDD63_09670 PF02687 FtsX-like permease family DDD63_09670 PF12704 MacB-like periplasmic core domain DDD63_09690 PF13657 HipA N-terminal domain DDD63_09690 PF07804 HipA-like C-terminal domain DDD63_09700 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DDD63_09700 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DDD63_09705 PF00596 Class II Aldolase and Adducin N-terminal domain DDD63_09710 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_09710 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_09715 PF13685 Iron-containing alcohol dehydrogenase DDD63_09720 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_09720 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_09725 PF13344 Haloacid dehalogenase-like hydrolase DDD63_09740 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_09740 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_09745 PF02652 L-lactate permease DDD63_09755 PF11870 Domain of unknown function (DUF3390) DDD63_09755 PF13183 4Fe-4S dicluster domain DDD63_09755 PF02589 LUD domain DDD63_09760 PF02589 LUD domain DDD63_09800 PF06259 Alpha/beta hydrolase DDD63_09805 PF02261 Aspartate decarboxylase DDD63_09810 PF02569 Pantoate-beta-alanine ligase DDD63_09835 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DDD63_09840 PF00809 Pterin binding enzyme DDD63_09845 PF01227 GTP cyclohydrolase I DDD63_09860 PF01171 PP-loop family DDD63_09860 PF09179 TilS substrate binding domain DDD63_09870 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DDD63_09895 PF13276 HTH-like domain DDD63_09895 PF01527 Transposase DDD63_09895 PF00665 Integrase core domain DDD63_09895 PF13333 Integrase core domain DDD63_09905 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain DDD63_09905 PF00877 NlpC/P60 family DDD63_09910 PF01053 Cys/Met metabolism PLP-dependent enzyme DDD63_09925 PF13183 4Fe-4S dicluster domain DDD63_09925 PF01565 FAD binding domain DDD63_09925 PF02913 FAD linked oxidases, C-terminal domain DDD63_09935 PF02421 Ferrous iron transport protein B DDD63_09935 PF07670 Nucleoside recognition DDD63_09935 PF17910 FeoB cytosolic helical domain DDD63_09935 PF07664 Ferrous iron transport protein B C terminus DDD63_09945 PF00455 DeoR C terminal sensor domain DDD63_09945 PF08220 DeoR-like helix-turn-helix domain DDD63_09950 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DDD63_09955 PF07005 Sugar-binding N-terminal domain DDD63_09955 PF17042 Nucleotide-binding C-terminal domain DDD63_09960 PF02447 GntP family permease DDD63_09985 PF05524 PEP-utilising enzyme, N-terminal DDD63_09985 PF00391 PEP-utilising enzyme, mobile domain DDD63_09985 PF02896 PEP-utilising enzyme, TIM barrel domain DDD63_09990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDD63_09990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDD63_10000 PF00005 ABC transporter DDD63_10005 PF02653 Branched-chain amino acid transport system / permease component DDD63_10010 PF13407 Periplasmic binding protein domain DDD63_10015 PF01261 Xylose isomerase-like TIM barrel DDD63_10020 PF00456 Transketolase, thiamine diphosphate binding domain DDD63_10040 PF05025 RbsD / FucU transport protein family DDD63_10045 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DDD63_10045 PF00294 pfkB family carbohydrate kinase DDD63_10055 PF02734 DAK2 domain DDD63_10060 PF02733 Dak1 domain DDD63_10065 PF01970 Tripartite tricarboxylate transporter TctA family DDD63_10080 PF00701 Dihydrodipicolinate synthetase family DDD63_10085 PF09339 IclR helix-turn-helix domain DDD63_10085 PF01614 Bacterial transcriptional regulator DDD63_10100 PF07724 AAA domain (Cdc48 subfamily) DDD63_10100 PF17871 AAA lid domain DDD63_10100 PF02861 Clp amino terminal domain, pathogenicity island component DDD63_10100 PF00004 ATPase family associated with various cellular activities (AAA) DDD63_10100 PF10431 C-terminal, D2-small domain, of ClpB protein DDD63_10105 PF02580 D-Tyr-tRNA(Tyr) deacylase DDD63_10120 PF01571 Aminomethyltransferase folate-binding domain DDD63_10120 PF08669 Glycine cleavage T-protein C-terminal barrel domain DDD63_10125 PF08768 Domain of unknown function (DUF1794) DDD63_10140 PF01384 Phosphate transporter family DDD63_10150 PF00293 NUDIX domain DDD63_10155 PF13089 Polyphosphate kinase N-terminal domain DDD63_10155 PF17941 Polyphosphate kinase C-terminal domain 1 DDD63_10155 PF13090 Polyphosphate kinase C-terminal domain 2 DDD63_10155 PF02503 Polyphosphate kinase middle domain DDD63_10175 PF00583 Acetyltransferase (GNAT) family DDD63_10190 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDD63_10190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDD63_10200 PF00210 Ferritin-like domain DDD63_10205 PF00128 Alpha amylase, catalytic domain DDD63_10230 PF00892 EamA-like transporter family DDD63_10240 PF01641 SelR domain DDD63_10265 PF01546 Peptidase family M20/M25/M40 DDD63_10265 PF07687 Peptidase dimerisation domain DDD63_10280 PF13419 Haloacid dehalogenase-like hydrolase DDD63_10300 PF00586 AIR synthase related protein, N-terminal domain DDD63_10300 PF02769 AIR synthase related protein, C-terminal domain DDD63_10315 PF02872 5'-nucleotidase, C-terminal domain DDD63_10315 PF17936 Bacterial Ig domain DDD63_10315 PF00149 Calcineurin-like phosphoesterase DDD63_10320 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DDD63_10320 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DDD63_10330 PF02769 AIR synthase related protein, C-terminal domain DDD63_10330 PF00586 AIR synthase related protein, N-terminal domain DDD63_10330 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DDD63_10345 PF01259 SAICAR synthetase DDD63_10350 PF02843 Phosphoribosylglycinamide synthetase, C domain DDD63_10350 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DDD63_10350 PF02844 Phosphoribosylglycinamide synthetase, N domain DDD63_10355 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain DDD63_10355 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain DDD63_10380 PF00343 Carbohydrate phosphorylase DDD63_10395 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_10400 PF00528 Binding-protein-dependent transport system inner membrane component DDD63_10415 PF01116 Fructose-bisphosphate aldolase class-II DDD63_10425 PF02146 Sir2 family DDD63_10435 PF00156 Phosphoribosyl transferase domain DDD63_10485 PF00005 ABC transporter DDD63_10500 PF02770 Acyl-CoA dehydrogenase, middle domain DDD63_10500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDD63_10500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDD63_10505 PF01144 Coenzyme A transferase DDD63_10510 PF07690 Major Facilitator Superfamily DDD63_10515 PF13193 AMP-binding enzyme C-terminal domain DDD63_10515 PF00501 AMP-binding enzyme DDD63_10540 PF00106 short chain dehydrogenase DDD63_10550 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDD63_10550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDD63_10555 PF13344 Haloacid dehalogenase-like hydrolase DDD63_10570 PF02861 Clp amino terminal domain, pathogenicity island component DDD63_10570 PF07724 AAA domain (Cdc48 subfamily) DDD63_10570 PF00004 ATPase family associated with various cellular activities (AAA) DDD63_10570 PF10431 C-terminal, D2-small domain, of ClpB protein DDD63_10570 PF17871 AAA lid domain DDD63_10580 PF06827 Zinc finger found in FPG and IleRS DDD63_10580 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DDD63_10580 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DDD63_10585 PF01580 FtsK/SpoIIIE family DDD63_10605 PF00082 Subtilase family DDD63_10610 PF00440 Bacterial regulatory proteins, tetR family DDD63_10610 PF08361 MAATS-type transcriptional repressor, C-terminal region DDD63_10695 PF04073 Aminoacyl-tRNA editing domain DDD63_10710 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDD63_10715 PF03051 Peptidase C1-like family DDD63_10725 PF13977 BetI-type transcriptional repressor, C-terminal DDD63_10725 PF00440 Bacterial regulatory proteins, tetR family DDD63_10735 PF00005 ABC transporter DDD63_10790 PF12833 Helix-turn-helix domain DDD63_10790 PF01965 DJ-1/PfpI family DDD63_10795 PF03747 ADP-ribosylglycohydrolase DDD63_10800 PF05958 tRNA (Uracil-5-)-methyltransferase DDD63_10810 PF08240 Alcohol dehydrogenase GroES-like domain DDD63_10810 PF00107 Zinc-binding dehydrogenase DDD63_10825 PF00534 Glycosyl transferases group 1 DDD63_10825 PF13439 Glycosyltransferase Family 4 DDD63_10855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDD63_10855 PF00672 HAMP domain DDD63_10855 PF00512 His Kinase A (phospho-acceptor) domain DDD63_10860 PF00072 Response regulator receiver domain DDD63_10860 PF00486 Transcriptional regulatory protein, C terminal DDD63_10870 PF13411 MerR HTH family regulatory protein DDD63_10875 PF01556 DnaJ C terminal domain DDD63_10875 PF00226 DnaJ domain DDD63_10875 PF00684 DnaJ central domain DDD63_10880 PF01025 GrpE DDD63_10885 PF00012 Hsp70 protein DDD63_10910 PF04205 FMN-binding domain DDD63_10910 PF04205 FMN-binding domain DDD63_10910 PF00890 FAD binding domain DDD63_10910 PF00890 FAD binding domain DDD63_10920 PF00480 ROK family DDD63_10930 PF07690 Major Facilitator Superfamily DDD63_10945 PF00893 Small Multidrug Resistance protein DDD63_10970 PF00005 ABC transporter DDD63_10980 PF02634 FdhD/NarQ family DDD63_10995 PF00005 ABC transporter DDD63_10995 PF08402 TOBE domain DDD63_11030 PF00589 Phage integrase family DDD63_11030 PF14659 Phage integrase, N-terminal SAM-like domain DDD63_11050 PF01548 Transposase DDD63_11050 PF02371 Transposase IS116/IS110/IS902 family DDD63_11075 PF00005 ABC transporter DDD63_11080 PF00293 NUDIX domain DDD63_11085 PF01487 Type I 3-dehydroquinase DDD63_11110 PF01882 Protein of unknown function DUF58 DDD63_11115 PF17863 AAA lid domain DDD63_11115 PF07726 ATPase family associated with various cellular activities (AAA) DDD63_11125 PF14256 YwiC-like protein DDD63_11140 PF13411 MerR HTH family regulatory protein DDD63_11140 PF07739 TipAS antibiotic-recognition domain DDD63_11150 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV DDD63_11165 PF00206 Lyase DDD63_11165 PF08328 Adenylosuccinate lyase C-terminal DDD63_11170 PF09335 SNARE associated Golgi protein DDD63_11175 PF12704 MacB-like periplasmic core domain DDD63_11175 PF02687 FtsX-like permease family DDD63_11175 PF00005 ABC transporter DDD63_11185 PF00005 ABC transporter DDD63_11215 PF08240 Alcohol dehydrogenase GroES-like domain DDD63_11215 PF00107 Zinc-binding dehydrogenase DDD63_11240 PF00403 Heavy-metal-associated domain DDD63_11260 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DDD63_11260 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDD63_11265 PF00701 Dihydrodipicolinate synthetase family DDD63_11270 PF00920 Dehydratase family DDD63_11275 PF00392 Bacterial regulatory proteins, gntR family DDD63_11275 PF07702 UTRA domain DDD63_11280 PF08125 Mannitol dehydrogenase C-terminal domain DDD63_11280 PF01232 Mannitol dehydrogenase Rossmann domain DDD63_11285 PF02447 GntP family permease DDD63_11315 PF00072 Response regulator receiver domain DDD63_11315 PF00196 Bacterial regulatory proteins, luxR family DDD63_11325 PF01661 Macro domain DDD63_11335 PF01235 Sodium:alanine symporter family DDD63_11340 PF00873 AcrB/AcrD/AcrF family DDD63_11365 PF00069 Protein kinase domain DDD63_11365 PF03793 PASTA domain DDD63_11405 PF07726 ATPase family associated with various cellular activities (AAA) DDD63_11405 PF17863 AAA lid domain DDD63_11435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDD63_11435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDD63_11440 PF01081 KDPG and KHG aldolase DDD63_11470 PF01702 Queuine tRNA-ribosyltransferase DDD63_11505 PF00291 Pyridoxal-phosphate dependent enzyme DDD63_11505 PF00585 C-terminal regulatory domain of Threonine dehydratase DDD63_11515 PF00440 Bacterial regulatory proteins, tetR family DDD63_11530 PF00561 alpha/beta hydrolase fold DDD63_11565 PF01875 Memo-like protein DDD63_11570 PF00248 Aldo/keto reductase family DDD63_11575 PF00248 Aldo/keto reductase family DDD63_11580 PF08543 Phosphomethylpyrimidine kinase DDD63_11600 PF03796 DnaB-like helicase C terminal domain DDD63_11600 PF00772 DnaB-like helicase N terminal domain DDD63_11605 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DDD63_11615 PF17763 Glutaminase/Asparaginase C-terminal domain DDD63_11615 PF00710 Asparaginase, N-terminal DDD63_11620 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDD63_11620 PF00205 Thiamine pyrophosphate enzyme, central domain DDD63_11620 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDD63_11630 PF02780 Transketolase, C-terminal domain DDD63_11630 PF02779 Transketolase, pyrimidine binding domain DDD63_11635 PF00456 Transketolase, thiamine diphosphate binding domain DDD63_11635 PF02779 Transketolase, pyrimidine binding domain DDD63_11635 PF02780 Transketolase, C-terminal domain DDD63_11645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDD63_11645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDD63_11650 PF01979 Amidohydrolase family DDD63_11655 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DDD63_11665 PF01177 Asp/Glu/Hydantoin racemase DDD63_11670 PF01614 Bacterial transcriptional regulator DDD63_11670 PF09339 IclR helix-turn-helix domain DDD63_11680 PF00356 Bacterial regulatory proteins, lacI family DDD63_11685 PF01263 Aldose 1-epimerase DDD63_11695 PF00288 GHMP kinases N terminal domain DDD63_11695 PF10509 Galactokinase galactose-binding signature DDD63_11695 PF08544 GHMP kinases C terminal DDD63_11710 PF16363 GDP-mannose 4,6 dehydratase DDD63_11720 PF02447 GntP family permease DDD63_11725 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DDD63_11725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDD63_11735 PF07729 FCD domain DDD63_11735 PF00392 Bacterial regulatory proteins, gntR family DDD63_11740 PF01281 Ribosomal protein L9, N-terminal domain DDD63_11740 PF03948 Ribosomal protein L9, C-terminal domain DDD63_11745 PF01084 Ribosomal protein S18 DDD63_11750 PF00436 Single-strand binding protein family DDD63_11755 PF01250 Ribosomal protein S6 DDD63_11760 PF00905 Penicillin binding protein transpeptidase domain DDD63_11760 PF00912 Transglycosylase DDD63_11765 PF01594 AI-2E family transporter DDD63_11780 PF01658 Myo-inositol-1-phosphate synthase DDD63_11785 PF02384 N-6 DNA Methylase DDD63_11790 PF09572 XamI restriction endonuclease DDD63_11795 PF00665 Integrase core domain DDD63_11795 PF13276 HTH-like domain DDD63_11800 PF13333 Integrase core domain DDD63_11800 PF00665 Integrase core domain DDD63_11800 PF13276 HTH-like domain DDD63_11815 PF00293 NUDIX domain DDD63_11865 PF00155 Aminotransferase class I and II DDD63_11870 PF01820 D-ala D-ala ligase N-terminus DDD63_11870 PF07478 D-ala D-ala ligase C-terminus DDD63_11875 PF02195 ParB-like nuclease domain DDD63_11875 PF17762 HTH domain found in ParB protein DDD63_11880 PF13614 AAA domain DDD63_11885 PF02527 rRNA small subunit methyltransferase G DDD63_11900 PF02096 60Kd inner membrane protein DDD63_11905 PF01809 Putative membrane protein insertion efficiency factor DDD63_11910 PF00825 Ribonuclease P DDD63_11915 PF00468 Ribosomal protein L34