C3V41_00020	SM00460	Transglutaminase/protease-like homologues
C3V41_00025	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_00075	SM00382	ATPases associated with a variety of cellular activities
C3V41_00115	SM00331	Sigma factor PP2C-like phosphatases
C3V41_00115	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C3V41_00120	SM00240	Forkhead associated domain
C3V41_00135	SM00421	helix_turn_helix, Lux Regulon
C3V41_00135	SM00448	cheY-homologous receiver domain
C3V41_00155	SM00382	ATPases associated with a variety of cellular activities
C3V41_00180	SM00354	helix_turn _helix lactose operon repressor
C3V41_00225	SM00382	ATPases associated with a variety of cellular activities
C3V41_00230	SM00387	Histidine kinase-like ATPases
C3V41_00235	SM00421	helix_turn_helix, Lux Regulon
C3V41_00235	SM00448	cheY-homologous receiver domain
C3V41_00270	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_00360	SM00937	C3V41_00360
C3V41_00370	SM00382	ATPases associated with a variety of cellular activities
C3V41_00385	SM00382	ATPases associated with a variety of cellular activities
C3V41_00390	SM00387	Histidine kinase-like ATPases
C3V41_00390	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_00395	SM00448	cheY-homologous receiver domain
C3V41_00395	SM00862	Transcriptional regulatory protein, C terminal
C3V41_00440	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_00440	SM00866	C3V41_00440
C3V41_00470	SM00382	ATPases associated with a variety of cellular activities
C3V41_00490	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
C3V41_00490	SM01232	C3V41_00490
C3V41_00555	SM00382	ATPases associated with a variety of cellular activities
C3V41_00575	SM00382	ATPases associated with a variety of cellular activities
C3V41_00575	SM00994	ClpX C4-type zinc finger
C3V41_00575	SM01086	C-terminal, D2-small domain, of ClpB protein
C3V41_00580	SM00830	Chorismate mutase type II
C3V41_00615	SM00382	ATPases associated with a variety of cellular activities
C3V41_00625	SM00382	ATPases associated with a variety of cellular activities
C3V41_00630	SM00382	ATPases associated with a variety of cellular activities
C3V41_00635	SM00382	ATPases associated with a variety of cellular activities
C3V41_00645	SM00642	Alpha-amylase domain
C3V41_00655	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_00655	SM00866	C3V41_00655
C3V41_00680	SM00845	GatB domain
C3V41_00740	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3V41_00750	SM00244	prohibitin homologues
C3V41_00770	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_00770	SM00895	C3V41_00770
C3V41_00785	SM00382	ATPases associated with a variety of cellular activities
C3V41_00790	SM00382	ATPases associated with a variety of cellular activities
C3V41_00795	SM01130	C3V41_00795
C3V41_00810	SM00411	bacterial (prokaryotic) histone like domain
C3V41_00815	SM00382	ATPases associated with a variety of cellular activities
C3V41_00835	SM00487	DEAD-like helicases superfamily
C3V41_01000	SM00861	Transketolase, pyrimidine binding domain
C3V41_01005	SM01091	Transporter associated domain
C3V41_01035	SM00382	ATPases associated with a variety of cellular activities
C3V41_01080	SM00836	DALR anticodon binding domain
C3V41_01080	SM01016	Arginyl tRNA synthetase N terminal dom
C3V41_01100	SM00028	Tetratricopeptide repeats
C3V41_01115	SM00382	ATPases associated with a variety of cellular activities
C3V41_01115	SM00959	Rho termination factor, N-terminal domain
C3V41_01135	SM00937	C3V41_01135
C3V41_01165	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_01205	SM01266	C3V41_01205
C3V41_01250	SM00642	Alpha-amylase domain
C3V41_01320	SM00858	C3V41_01320
C3V41_01330	SM00382	ATPases associated with a variety of cellular activities
C3V41_01370	SM00382	ATPases associated with a variety of cellular activities
C3V41_01380	SM00881	CoA binding domain
C3V41_01390	SM00798	AICARFT/IMPCHase bienzyme
C3V41_01390	SM00851	MGS-like domain
C3V41_01420	SM00382	ATPases associated with a variety of cellular activities
C3V41_01425	SM00382	ATPases associated with a variety of cellular activities
C3V41_01440	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_01530	SM00421	helix_turn_helix, Lux Regulon
C3V41_01530	SM00448	cheY-homologous receiver domain
C3V41_01535	SM00387	Histidine kinase-like ATPases
C3V41_01540	SM00382	ATPases associated with a variety of cellular activities
C3V41_01575	SM00487	DEAD-like helicases superfamily
C3V41_01590	SM00316	Ribosomal protein S1-like RNA-binding domain
C3V41_01590	SM00322	K homology RNA-binding domain
C3V41_01620	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_01630	SM00382	ATPases associated with a variety of cellular activities
C3V41_01655	SM00382	ATPases associated with a variety of cellular activities
C3V41_01715	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3V41_01720	SM00833	Cobalamin synthesis protein cobW C-terminal domain
C3V41_01755	SM00382	ATPases associated with a variety of cellular activities
C3V41_01835	SM01130	C3V41_01835
C3V41_01945	SM00864	Tubulin/FtsZ family, GTPase domain
C3V41_01945	SM00865	Tubulin/FtsZ family, C-terminal domain
C3V41_01975	SM00363	S4 RNA-binding domain
C3V41_01985	SM00481	DNA polymerase alpha chain like domain
C3V41_02000	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3V41_02015	SM00710	Parallel beta-helix repeats
C3V41_02025	SM00822	C3V41_02025
C3V41_02075	SM00347	helix_turn_helix multiple antibiotic resistance protein
C3V41_02085	SM00487	DEAD-like helicases superfamily
C3V41_02085	SM00490	helicase superfamily c-terminal domain
C3V41_02100	SM00487	DEAD-like helicases superfamily
C3V41_02100	SM00490	helicase superfamily c-terminal domain
C3V41_02130	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3V41_02155	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_02180	SM00382	ATPases associated with a variety of cellular activities
C3V41_02205	SM00382	ATPases associated with a variety of cellular activities
C3V41_02210	SM00062	Bacterial periplasmic substrate-binding proteins
C3V41_02210	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
C3V41_02225	SM00967	RNA 2'-O ribose methyltransferase substrate binding
C3V41_02245	SM00382	ATPases associated with a variety of cellular activities
C3V41_02250	SM00422	helix_turn_helix, mercury resistance
C3V41_02260	SM00873	B3/4 domain
C3V41_02260	SM00874	tRNA synthetase B5 domain
C3V41_02260	SM00896	Ferredoxin-fold anticodon binding domain
C3V41_02335	SM00478	endonuclease III
C3V41_02375	SM00363	S4 RNA-binding domain
C3V41_02440	SM00382	ATPases associated with a variety of cellular activities
C3V41_02475	SM00422	helix_turn_helix, mercury resistance
C3V41_02505	SM00354	helix_turn _helix lactose operon repressor
C3V41_02510	SM00642	Alpha-amylase domain
C3V41_02535	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3V41_02540	SM00400	zinc finger
C3V41_02540	SM00493	C3V41_02540
C3V41_02570	SM00855	Phosphoglycerate mutase family
C3V41_02580	SM00849	Metallo-beta-lactamase superfamily
C3V41_02610	SM00271	DnaJ molecular chaperone homology domain
C3V41_02630	SM00382	ATPases associated with a variety of cellular activities
C3V41_02640	SM00829	Enoylreductase
C3V41_02645	SM00347	helix_turn_helix multiple antibiotic resistance protein
C3V41_02650	SM00382	ATPases associated with a variety of cellular activities
C3V41_02655	SM00382	ATPases associated with a variety of cellular activities
C3V41_02670	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_02670	SM01091	Transporter associated domain
C3V41_02690	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_02700	SM00382	ATPases associated with a variety of cellular activities
C3V41_02705	SM00917	LeuA allosteric (dimerisation) domain
C3V41_02730	SM00382	ATPases associated with a variety of cellular activities
C3V41_02760	SM00855	Phosphoglycerate mutase family
C3V41_02785	SM00382	ATPases associated with a variety of cellular activities
C3V41_02795	SM00244	prohibitin homologues
C3V41_02820	SM00382	ATPases associated with a variety of cellular activities
C3V41_02840	SM00448	cheY-homologous receiver domain
C3V41_02845	SM00563	Phosphate acyltransferases
C3V41_02860	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_02860	SM00740	C3V41_02860
C3V41_02875	SM00382	ATPases associated with a variety of cellular activities
C3V41_02895	SM00450	Rhodanese Homology Domain
C3V41_02905	SM00857	Resolvase, N terminal domain
C3V41_02945	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_02955	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_02975	SM00363	S4 RNA-binding domain
C3V41_03000	SM01350	C3V41_03000
C3V41_03010	SM00240	Forkhead associated domain
C3V41_03015	SM00422	helix_turn_helix, mercury resistance
C3V41_03020	SM00422	helix_turn_helix, mercury resistance
C3V41_03040	SM00640	Glycosyl hydrolases family 32
C3V41_03050	SM00354	helix_turn _helix lactose operon repressor
C3V41_03070	SM01022	C3V41_03070
C3V41_03095	SM00487	DEAD-like helicases superfamily
C3V41_03095	SM00490	helicase superfamily c-terminal domain
C3V41_03095	SM01142	C3V41_03095
C3V41_03115	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_03160	SM00822	C3V41_03160
C3V41_03285	SM00434	DNA Topoisomerase IV
C3V41_03295	SM00387	Histidine kinase-like ATPases
C3V41_03295	SM00433	TopoisomeraseII
C3V41_03320	SM00363	S4 RNA-binding domain
C3V41_03360	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
C3V41_03395	SM01061	CAT RNA binding domain
C3V41_03400	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C3V41_03400	SM00465	GIY-YIG type nucleases (URI domain)
C3V41_03485	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
C3V41_03495	SM00878	Biotin carboxylase C-terminal domain
C3V41_03525	SM00776	C3V41_03525
C3V41_03545	SM01409	C3V41_03545
C3V41_03550	SM00072	Guanylate kinase homologues.
C3V41_03560	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
C3V41_03565	SM00851	MGS-like domain
C3V41_03565	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
C3V41_03570	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
C3V41_03605	SM00841	Elongation factor P, C-terminal
C3V41_03605	SM01185	C3V41_03605
C3V41_03640	SM00732	Likely ribonuclease with RNase H fold.
C3V41_03645	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C3V41_03650	SM00363	S4 RNA-binding domain
C3V41_03650	SM01390	C3V41_03650
C3V41_03655	SM00382	ATPases associated with a variety of cellular activities
C3V41_03680	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3V41_03705	SM00487	DEAD-like helicases superfamily
C3V41_03705	SM00490	helicase superfamily c-terminal domain
C3V41_03730	SM00487	DEAD-like helicases superfamily
C3V41_03730	SM00490	helicase superfamily c-terminal domain
C3V41_03765	SM00316	Ribosomal protein S1-like RNA-binding domain
C3V41_03770	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
C3V41_03770	SM00475	5'-3' exonuclease
C3V41_03770	SM00482	DNA polymerase A domain
C3V41_03780	SM00448	cheY-homologous receiver domain
C3V41_03780	SM01012	C3V41_03780
C3V41_03840	SM00382	ATPases associated with a variety of cellular activities
C3V41_03925	SM00014	Acid phosphatase homologues
C3V41_03940	SM00642	Alpha-amylase domain
C3V41_03950	SM00642	Alpha-amylase domain
C3V41_03965	SM00341	Helicase and RNase D C-terminal
C3V41_03965	SM00474	3'-5' exonuclease
C3V41_03985	SM00861	Transketolase, pyrimidine binding domain
C3V41_03995	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_04020	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_04030	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3V41_04055	SM01230	C3V41_04055
C3V41_04060	SM00062	Bacterial periplasmic substrate-binding proteins
C3V41_04070	SM00382	ATPases associated with a variety of cellular activities
C3V41_04075	SM00855	Phosphoglycerate mutase family
C3V41_04085	SM01230	C3V41_04085
C3V41_04100	SM00382	ATPases associated with a variety of cellular activities
C3V41_04110	SM00382	ATPases associated with a variety of cellular activities
C3V41_04125	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3V41_04125	SM00954	Region found in RelA / SpoT proteins
C3V41_04145	SM01323	C3V41_04145
C3V41_04150	SM00382	ATPases associated with a variety of cellular activities
C3V41_04220	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
C3V41_04240	SM00729	Elongator protein 3, MiaB family, Radical SAM
C3V41_04255	SM00838	Elongation factor G C-terminus
C3V41_04310	SM00382	ATPases associated with a variety of cellular activities
C3V41_04335	SM00278	Helix-hairpin-helix DNA-binding motif class 1
C3V41_04355	SM00529	Helix-turn-helix diphteria tox regulatory element
C3V41_04360	SM00756	C3V41_04360
C3V41_04455	SM00825	Beta-ketoacyl synthase
C3V41_04495	SM00855	Phosphoglycerate mutase family
C3V41_04515	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_04515	SM01134	C3V41_04515
C3V41_04535	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
C3V41_04555	SM00316	Ribosomal protein S1-like RNA-binding domain
C3V41_04585	SM00354	helix_turn _helix lactose operon repressor
C3V41_04590	SM00382	ATPases associated with a variety of cellular activities
C3V41_04595	SM00382	ATPases associated with a variety of cellular activities
C3V41_04600	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
C3V41_04600	SM00387	Histidine kinase-like ATPases
C3V41_04605	SM00421	helix_turn_helix, Lux Regulon
C3V41_04605	SM00448	cheY-homologous receiver domain
C3V41_04610	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
C3V41_04610	SM01232	C3V41_04610
C3V41_04615	SM00358	Double-stranded RNA binding motif
C3V41_04615	SM00535	Ribonuclease III family
C3V41_04645	SM00354	helix_turn _helix lactose operon repressor
C3V41_04655	SM00487	DEAD-like helicases superfamily
C3V41_04655	SM00490	helicase superfamily c-terminal domain
C3V41_04660	SM01120	C3V41_04660
C3V41_04660	SM01121	C3V41_04660
C3V41_04680	SM00382	ATPases associated with a variety of cellular activities
C3V41_04685	SM00382	ATPases associated with a variety of cellular activities
C3V41_04735	SM00382	ATPases associated with a variety of cellular activities
C3V41_04750	SM00984	UDP binding domain
C3V41_04755	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3V41_04755	SM00387	Histidine kinase-like ATPases
C3V41_04755	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_04760	SM00448	cheY-homologous receiver domain
C3V41_04760	SM00862	Transcriptional regulatory protein, C terminal
C3V41_04780	SM00346	helix_turn_helix isocitrate lyase regulation
C3V41_04815	SM00257	Lysin motif
C3V41_04835	SM00491	C3V41_04835
C3V41_04860	SM00316	Ribosomal protein S1-like RNA-binding domain
C3V41_04860	SM00322	K homology RNA-binding domain
C3V41_04865	SM01387	C3V41_04865
C3V41_04870	SM00904	Riboflavin kinase
C3V41_04895	SM00854	Bacterial capsule synthesis protein PGA_cap
C3V41_04900	SM00843	C3V41_04900
C3V41_04915	SM00849	Metallo-beta-lactamase superfamily
C3V41_04975	SM00487	DEAD-like helicases superfamily
C3V41_04975	SM00490	helicase superfamily c-terminal domain
C3V41_05010	SM00382	ATPases associated with a variety of cellular activities
C3V41_05035	SM00479	C3V41_05035
C3V41_05040	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_05040	SM00740	C3V41_05040
C3V41_05045	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_05050	SM00240	Forkhead associated domain
C3V41_05050	SM00382	ATPases associated with a variety of cellular activities
C3V41_05065	SM01329	C3V41_05065
C3V41_05145	SM00852	Probable molybdopterin binding domain
C3V41_05160	SM00852	Probable molybdopterin binding domain
C3V41_05170	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
C3V41_05195	SM00382	ATPases associated with a variety of cellular activities
C3V41_05205	SM00382	ATPases associated with a variety of cellular activities
C3V41_05210	SM00382	ATPases associated with a variety of cellular activities
C3V41_05215	SM00382	ATPases associated with a variety of cellular activities
C3V41_05230	SM00450	Rhodanese Homology Domain
C3V41_05255	SM00382	ATPases associated with a variety of cellular activities
C3V41_05260	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_05340	SM00257	Lysin motif
C3V41_05350	SM00957	SecA DEAD-like domain
C3V41_05350	SM00958	SecA preprotein cross-linking domain
C3V41_05365	SM00909	Sporulation and spore germination
C3V41_05375	SM00448	cheY-homologous receiver domain
C3V41_05375	SM00862	Transcriptional regulatory protein, C terminal
C3V41_05395	SM00382	ATPases associated with a variety of cellular activities
C3V41_05495	SM00833	Cobalamin synthesis protein cobW C-terminal domain
C3V41_05550	SM00382	ATPases associated with a variety of cellular activities
C3V41_05605	SM00421	helix_turn_helix, Lux Regulon
C3V41_05605	SM00448	cheY-homologous receiver domain
C3V41_05655	SM00487	DEAD-like helicases superfamily
C3V41_05655	SM00490	helicase superfamily c-terminal domain
C3V41_05665	SM00481	DNA polymerase alpha chain like domain
C3V41_05680	SM01011	Aminopeptidase P, N-terminal domain
C3V41_05710	SM00327	von Willebrand factor (vWF) type A domain
C3V41_05720	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
C3V41_05730	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_05730	SM00924	MgtE intracellular N domain
C3V41_05780	SM00562	C3V41_05780
C3V41_05830	SM00382	ATPases associated with a variety of cellular activities
C3V41_05835	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_05835	SM01134	C3V41_05835
C3V41_05945	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_05945	SM01134	C3V41_05945
C3V41_06030	SM00382	ATPases associated with a variety of cellular activities
C3V41_06095	SM00644	C3V41_06095
C3V41_06095	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
C3V41_06130	SM01001	AIR carboxylase
C3V41_06155	SM00387	Histidine kinase-like ATPases
C3V41_06155	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_06160	SM00448	cheY-homologous receiver domain
C3V41_06160	SM00862	Transcriptional regulatory protein, C terminal
C3V41_06165	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
C3V41_06225	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
C3V41_06225	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
C3V41_06260	SM00919	Malic enzyme, NAD binding domain
C3V41_06260	SM01274	C3V41_06260
C3V41_06275	SM00382	ATPases associated with a variety of cellular activities
C3V41_06330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
C3V41_06335	SM00382	ATPases associated with a variety of cellular activities
C3V41_06365	SM00421	helix_turn_helix, Lux Regulon
C3V41_06365	SM00448	cheY-homologous receiver domain
C3V41_06370	SM00861	Transketolase, pyrimidine binding domain
C3V41_06380	SM00382	ATPases associated with a variety of cellular activities
C3V41_06395	SM00478	endonuclease III
C3V41_06405	SM00421	helix_turn_helix, Lux Regulon
C3V41_06405	SM00448	cheY-homologous receiver domain
C3V41_06430	SM00479	C3V41_06430
C3V41_06435	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_06435	SM01240	C3V41_06435
C3V41_06445	SM00883	Chaperonin 10 Kd subunit
C3V41_06515	SM01005	Alanine racemase, C-terminal domain
C3V41_06550	SM00382	ATPases associated with a variety of cellular activities
C3V41_06560	SM00382	ATPases associated with a variety of cellular activities
C3V41_06560	SM00862	Transcriptional regulatory protein, C terminal
C3V41_06560	SM01043	Bacterial transcriptional activator domain
C3V41_06605	SM00662	RNA polymerases D
C3V41_06700	SM01374	C3V41_06700
C3V41_06720	SM00322	K homology RNA-binding domain
C3V41_06735	SM01382	C3V41_06735
C3V41_06735	SM01383	C3V41_06735
C3V41_06755	SM01403	C3V41_06755
C3V41_06780	SM00838	Elongation factor G C-terminus
C3V41_06780	SM00889	Elongation factor G, domain IV
C3V41_06850	SM00240	Forkhead associated domain
C3V41_06850	SM00382	ATPases associated with a variety of cellular activities
C3V41_06870	SM00331	Sigma factor PP2C-like phosphatases
C3V41_06870	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C3V41_06880	SM00460	Transglutaminase/protease-like homologues
C3V41_06895	SM00060	Fibronectin type 3 domain
C3V41_06900	SM00028	Tetratricopeptide repeats
C3V41_06905	SM00028	Tetratricopeptide repeats
C3V41_06910	SM00028	Tetratricopeptide repeats
C3V41_06980	SM00327	von Willebrand factor (vWF) type A domain
C3V41_07025	SM00421	helix_turn_helix, Lux Regulon
C3V41_07050	SM00382	ATPases associated with a variety of cellular activities
C3V41_07095	SM00663	RNA polymerase I subunit A N-terminus
C3V41_07125	SM00649	Ribosomal protein L11/L12
C3V41_07130	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
C3V41_07165	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
C3V41_07175	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
C3V41_07220	SM00855	Phosphoglycerate mutase family
C3V41_07265	SM00838	Elongation factor G C-terminus
C3V41_07280	SM00382	ATPases associated with a variety of cellular activities
C3V41_07295	SM00382	ATPases associated with a variety of cellular activities
C3V41_07425	SM00382	ATPases associated with a variety of cellular activities
C3V41_07435	SM00028	Tetratricopeptide repeats
C3V41_07440	SM00028	Tetratricopeptide repeats
C3V41_07445	SM00028	Tetratricopeptide repeats
C3V41_07450	SM00028	Tetratricopeptide repeats
C3V41_07525	SM00028	Tetratricopeptide repeats
C3V41_07540	SM00028	Tetratricopeptide repeats
C3V41_07555	SM00382	ATPases associated with a variety of cellular activities
C3V41_07560	SM00382	ATPases associated with a variety of cellular activities
C3V41_07590	SM00382	ATPases associated with a variety of cellular activities
C3V41_07620	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
C3V41_07630	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_07635	SM00382	ATPases associated with a variety of cellular activities
C3V41_07635	SM01086	C-terminal, D2-small domain, of ClpB protein
C3V41_07660	SM00422	helix_turn_helix, mercury resistance
C3V41_07665	SM00271	DnaJ molecular chaperone homology domain
C3V41_07685	SM00382	ATPases associated with a variety of cellular activities
C3V41_07695	SM00421	helix_turn_helix, Lux Regulon
C3V41_07695	SM00448	cheY-homologous receiver domain
C3V41_07745	SM00530	Helix-turn-helix XRE-family like proteins 
C3V41_07780	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_07785	SM00382	ATPases associated with a variety of cellular activities
C3V41_07825	SM00478	endonuclease III
C3V41_07830	SM00100	Cyclic nucleotide-monophosphate binding domain
C3V41_07830	SM00419	helix_turn_helix, cAMP Regulatory protein
C3V41_07900	SM00382	ATPases associated with a variety of cellular activities
C3V41_07905	SM00493	C3V41_07905
C3V41_07910	SM00422	helix_turn_helix, mercury resistance
C3V41_07920	SM00382	ATPases associated with a variety of cellular activities
C3V41_07980	SM00859	Semialdehyde dehydrogenase, NAD binding domain
C3V41_08015	SM00919	Malic enzyme, NAD binding domain
C3V41_08015	SM01274	C3V41_08015
C3V41_08035	SM00382	ATPases associated with a variety of cellular activities
C3V41_08070	SM00382	ATPases associated with a variety of cellular activities
C3V41_08120	SM00967	RNA 2'-O ribose methyltransferase substrate binding
C3V41_08125	SM00840	C3V41_08125
C3V41_08145	SM00093	SERine  Proteinase INhibitors
C3V41_08150	SM00093	SERine  Proteinase INhibitors
C3V41_08190	SM00382	ATPases associated with a variety of cellular activities
C3V41_08200	SM00650	Ribosomal RNA adenine dimethylases
C3V41_08205	SM01208	C3V41_08205
C3V41_08210	SM01208	C3V41_08210
C3V41_08255	SM00870	C3V41_08255
C3V41_08265	SM00382	ATPases associated with a variety of cellular activities
C3V41_08280	SM00731	SprT homologues.
C3V41_08300	SM01058	CarD-like/TRCF domain
C3V41_08305	SM00448	cheY-homologous receiver domain
C3V41_08305	SM00862	Transcriptional regulatory protein, C terminal
C3V41_08310	SM00387	Histidine kinase-like ATPases
C3V41_08310	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_08355	SM00487	DEAD-like helicases superfamily
C3V41_08355	SM00490	helicase superfamily c-terminal domain
C3V41_08355	SM00982	C3V41_08355
C3V41_08355	SM01058	CarD-like/TRCF domain
C3V41_08390	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_08395	SM00240	Forkhead associated domain
C3V41_08400	SM00460	Transglutaminase/protease-like homologues
C3V41_08420	SM00060	Fibronectin type 3 domain
C3V41_08550	SM01400	C3V41_08550
C3V41_08660	SM01101	C3V41_08660
C3V41_08710	SM00354	helix_turn _helix lactose operon repressor
C3V41_08715	SM01038	Beta galactosidase small chain
C3V41_08770	SM00507	HNH nucleases
C3V41_08785	SM00448	cheY-homologous receiver domain
C3V41_08790	SM00387	Histidine kinase-like ATPases
C3V41_08835	SM00382	ATPases associated with a variety of cellular activities
C3V41_08855	SM00448	cheY-homologous receiver domain
C3V41_08855	SM00862	Transcriptional regulatory protein, C terminal
C3V41_08860	SM00387	Histidine kinase-like ATPases
C3V41_08860	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_08880	SM01120	C3V41_08880
C3V41_08955	SM00382	ATPases associated with a variety of cellular activities
C3V41_09030	SM00382	ATPases associated with a variety of cellular activities
C3V41_09040	SM00421	helix_turn_helix, Lux Regulon
C3V41_09040	SM00448	cheY-homologous receiver domain
C3V41_09210	SM00354	helix_turn _helix lactose operon repressor
C3V41_09270	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
C3V41_09325	SM00829	Enoylreductase
C3V41_09340	SM00470	ParB-like nuclease domain
C3V41_09355	SM00393	Putative single-stranded nucleic acids-binding domain
C3V41_09365	SM01234	C3V41_09365
C3V41_09380	SM00382	ATPases associated with a variety of cellular activities
C3V41_09380	SM00760	Bacterial dnaA protein helix-turn-helix domain
C3V41_09385	SM00480	DNA polymerase III beta subunit
C3V41_09405	SM00382	ATPases associated with a variety of cellular activities
C3V41_09425	SM00387	Histidine kinase-like ATPases
C3V41_09425	SM00433	TopoisomeraseII
C3V41_09430	SM00434	DNA Topoisomerase IV
C3V41_09520	SM00240	Forkhead associated domain
C3V41_09525	SM00240	Forkhead associated domain
C3V41_09530	SM00331	Sigma factor PP2C-like phosphatases
C3V41_09530	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
C3V41_09550	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_09550	SM00740	C3V41_09550
C3V41_09660	SM00831	Cation transporter/ATPase, N-terminus
C3V41_09705	SM00382	ATPases associated with a variety of cellular activities
C3V41_09750	SM00487	DEAD-like helicases superfamily
C3V41_09750	SM00490	helicase superfamily c-terminal domain
C3V41_09830	SM00226	Low molecular weight phosphatase family
C3V41_09855	SM00382	ATPases associated with a variety of cellular activities
C3V41_09880	SM00382	ATPases associated with a variety of cellular activities
C3V41_09955	SM00244	prohibitin homologues
C3V41_09975	SM00382	ATPases associated with a variety of cellular activities
C3V41_10060	SM00382	ATPases associated with a variety of cellular activities
C3V41_10070	SM00116	Domain in cystathionine beta-synthase and other proteins.
C3V41_10070	SM01240	C3V41_10070
C3V41_10120	SM00858	C3V41_10120
C3V41_10155	SM00382	ATPases associated with a variety of cellular activities
C3V41_10180	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
C3V41_10180	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
C3V41_10180	SM00493	C3V41_10180
C3V41_10245	SM00858	C3V41_10245
C3V41_10255	SM00852	Probable molybdopterin binding domain
C3V41_10270	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3V41_10270	SM00387	Histidine kinase-like ATPases
C3V41_10270	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_10275	SM00448	cheY-homologous receiver domain
C3V41_10275	SM00862	Transcriptional regulatory protein, C terminal
C3V41_10290	SM00986	Uracil DNA glycosylase superfamily
C3V41_10290	SM00987	UreE urease accessory protein, C-terminal domain 
C3V41_10320	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3V41_10320	SM00387	Histidine kinase-like ATPases
C3V41_10320	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_10325	SM00448	cheY-homologous receiver domain
C3V41_10325	SM00862	Transcriptional regulatory protein, C terminal
C3V41_10370	SM00487	DEAD-like helicases superfamily
C3V41_10370	SM00490	helicase superfamily c-terminal domain
C3V41_10395	SM00529	Helix-turn-helix diphteria tox regulatory element
C3V41_10415	SM00855	Phosphoglycerate mutase family
C3V41_10420	SM01192	C3V41_10420
C3V41_10420	SM01193	C3V41_10420
C3V41_10475	SM00226	Low molecular weight phosphatase family
C3V41_10505	SM00421	helix_turn_helix, Lux Regulon
C3V41_10505	SM00448	cheY-homologous receiver domain
C3V41_10520	SM00382	ATPases associated with a variety of cellular activities
C3V41_10600	SM00670	Large family of predicted nucleotide-binding domains
C3V41_10625	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_10715	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
C3V41_10760	SM00240	Forkhead associated domain
C3V41_10760	SM00382	ATPases associated with a variety of cellular activities
C3V41_10780	SM00306	Hint (Hedgehog/Intein) domain N-terminal region
C3V41_10815	SM00740	C3V41_10815
C3V41_10815	SM00894	Excalibur calcium-binding domain
C3V41_10870	SM00382	ATPases associated with a variety of cellular activities
C3V41_10910	SM00382	ATPases associated with a variety of cellular activities
C3V41_10920	SM00382	ATPases associated with a variety of cellular activities
C3V41_10920	SM00487	DEAD-like helicases superfamily
C3V41_10920	SM00490	helicase superfamily c-terminal domain
C3V41_10920	SM00847	Helicase associated domain (HA2)  Add an annotation
C3V41_10935	SM00220	Serine/Threonine protein kinases, catalytic domain
C3V41_11015	SM00382	ATPases associated with a variety of cellular activities
C3V41_11020	SM00382	ATPases associated with a variety of cellular activities
C3V41_11175	SM00479	C3V41_11175
C3V41_11280	SM00448	cheY-homologous receiver domain
C3V41_11315	SM00382	ATPases associated with a variety of cellular activities
C3V41_11380	SM01209	C3V41_11380
C3V41_11380	SM01210	C3V41_11380
C3V41_11430	SM01211	C3V41_11430
C3V41_11465	SM00422	helix_turn_helix, mercury resistance
C3V41_11515	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
C3V41_11520	SM00420	helix_turn_helix, Deoxyribose operon repressor
C3V41_11520	SM01134	C3V41_11520
C3V41_11570	SM00382	ATPases associated with a variety of cellular activities
C3V41_11620	SM00487	DEAD-like helicases superfamily
C3V41_11620	SM00490	helicase superfamily c-terminal domain
C3V41_11630	SM00382	ATPases associated with a variety of cellular activities
C3V41_11685	SM00382	ATPases associated with a variety of cellular activities
C3V41_11820	SM00382	ATPases associated with a variety of cellular activities
C3V41_11870	SM00421	helix_turn_helix, Lux Regulon
C3V41_11870	SM00448	cheY-homologous receiver domain
C3V41_11880	SM00382	ATPases associated with a variety of cellular activities
C3V41_11890	SM00905	Dihydroneopterin aldolase
C3V41_11975	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
C3V41_11975	SM00387	Histidine kinase-like ATPases
C3V41_11975	SM00388	His Kinase A (phosphoacceptor) domain
C3V41_11980	SM00448	cheY-homologous receiver domain
C3V41_11980	SM00862	Transcriptional regulatory protein, C terminal
C3V41_11995	SM00382	ATPases associated with a variety of cellular activities
C3V41_12050	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
C3V41_12055	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
C3V41_12110	SM01101	C3V41_12110
C3V41_12135	SM00487	DEAD-like helicases superfamily
C3V41_12150	SM00341	Helicase and RNase D C-terminal
C3V41_12210	SM00382	ATPases associated with a variety of cellular activities
C3V41_12220	SM01133	C3V41_12220
C3V41_12225	SM00642	Alpha-amylase domain
C3V41_12245	SM00382	ATPases associated with a variety of cellular activities
C3V41_12285	SM01155	C3V41_12285
C3V41_12315	SM00382	ATPases associated with a variety of cellular activities
C3V41_12330	SM00862	Transcriptional regulatory protein, C terminal
C3V41_12345	SM00382	ATPases associated with a variety of cellular activities
C3V41_12350	SM00968	SMC proteins Flexible Hinge Domain
C3V41_12370	SM00382	ATPases associated with a variety of cellular activities
C3V41_12370	SM00962	SRP54-type protein, GTPase domain
C3V41_12370	SM00963	SRP54-type protein, helical bundle domain
C3V41_12380	SM00421	helix_turn_helix, Lux Regulon
C3V41_12380	SM00448	cheY-homologous receiver domain
C3V41_12395	SM00382	ATPases associated with a variety of cellular activities
C3V41_12400	SM00382	ATPases associated with a variety of cellular activities
C3V41_12400	SM00962	SRP54-type protein, GTPase domain
C3V41_12400	SM00963	SRP54-type protein, helical bundle domain
C3V41_12405	SM00642	Alpha-amylase domain
C3V41_12415	SM00642	Alpha-amylase domain
C3V41_12425	SM00382	ATPases associated with a variety of cellular activities
C3V41_12445	SM00642	Alpha-amylase domain
C3V41_12450	SM00893	Electron transfer flavoprotein domain
C3V41_12460	SM00382	ATPases associated with a variety of cellular activities
C3V41_12470	SM00327	von Willebrand factor (vWF) type A domain
C3V41_12495	SM00567	E-Z type HEAT repeats
C3V41_12530	SM00387	Histidine kinase-like ATPases
C3V41_12550	SM00292	breast cancer carboxy-terminal domain
C3V41_12550	SM00532	Ligase N family
C3V41_12585	SM00506	Appr-1"-p processing enzyme
C3V41_12605	SM00382	ATPases associated with a variety of cellular activities
C3V41_12605	SM01086	C-terminal, D2-small domain, of ClpB protein
C3V41_12670	SM00363	S4 RNA-binding domain
