locus-tag class description JG540_00005 PF00308 Bacterial dnaA protein JG540_00005 PF08299 Bacterial dnaA protein helix-turn-helix JG540_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JG540_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JG540_00010 PF02767 DNA polymerase III beta subunit, central domain JG540_00015 PF02463 RecF/RecN/SMC N terminal domain JG540_00020 PF05258 Dna[CI] antecedent, DciA JG540_00025 PF00204 DNA gyrase B JG540_00025 PF00986 DNA gyrase B subunit, carboxyl terminus JG540_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_00025 PF01751 Toprim domain JG540_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A JG540_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller JG540_00035 PF12089 Transmembrane domain of unknown function (DUF3566) JG540_00070 PF00248 Aldo/keto reductase family JG540_00080 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JG540_00085 PF01694 Rhomboid family JG540_00090 PF06781 Cell division protein CrgA JG540_00095 PF04203 Sortase domain JG540_00105 PF03793 PASTA domain JG540_00105 PF00069 Protein kinase domain JG540_00110 PF00069 Protein kinase domain JG540_00115 PF00905 Penicillin binding protein transpeptidase domain JG540_00120 PF01098 Cell cycle protein JG540_00130 PF16697 Inner membrane component of T3SS, cytoplasmic domain JG540_00145 PF12401 Protein of unknown function (DUF2662) JG540_00145 PF00498 FHA domain JG540_00160 PF02554 Carbon starvation protein CstA JG540_00160 PF13722 5TM C-terminal transporter carbon starvation CstA JG540_00165 PF00156 Phosphoribosyl transferase domain JG540_00170 PF02080 TrkA-C domain JG540_00170 PF06826 Predicted Permease Membrane Region JG540_00175 PF03601 Conserved hypothetical protein 698 JG540_00185 PF00266 Aminotransferase class-V JG540_00190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JG540_00190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JG540_00190 PF01842 ACT domain JG540_00200 PF13411 MerR HTH family regulatory protein JG540_00200 PF07739 TipAS antibiotic-recognition domain JG540_00205 PF00690 Cation transporter/ATPase, N-terminus JG540_00205 PF00689 Cation transporting ATPase, C-terminus JG540_00210 PF00912 Transglycosylase JG540_00210 PF00905 Penicillin binding protein transpeptidase domain JG540_00215 PF01250 Ribosomal protein S6 JG540_00220 PF00436 Single-strand binding protein family JG540_00225 PF01084 Ribosomal protein S18 JG540_00230 PF03948 Ribosomal protein L9, C-terminal domain JG540_00230 PF01281 Ribosomal protein L9, N-terminal domain JG540_00240 PF03796 DnaB-like helicase C terminal domain JG540_00240 PF00772 DnaB-like helicase N terminal domain JG540_00250 PF02463 RecF/RecN/SMC N terminal domain JG540_00250 PF06470 SMC proteins Flexible Hinge Domain JG540_00255 PF01048 Phosphorylase superfamily JG540_00270 PF12697 Alpha/beta hydrolase family JG540_00280 PF02664 S-Ribosylhomocysteinase (LuxS) JG540_00285 PF00561 alpha/beta hydrolase fold JG540_00290 PF01594 AI-2E family transporter JG540_00295 PF08543 Phosphomethylpyrimidine kinase JG540_00300 PF00128 Alpha amylase, catalytic domain JG540_00305 PF03313 Serine dehydratase alpha chain JG540_00305 PF03315 Serine dehydratase beta chain JG540_00310 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JG540_00315 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system JG540_00325 PF13657 HipA N-terminal domain JG540_00325 PF07804 HipA-like C-terminal domain JG540_00330 PF03780 Asp23 family, cell envelope-related function JG540_00355 PF04542 Sigma-70 region 2 JG540_00355 PF08281 Sigma-70, region 4 JG540_00375 PF00171 Aldehyde dehydrogenase family JG540_00380 PF11941 Domain of unknown function (DUF3459) JG540_00380 PF00128 Alpha amylase, catalytic domain JG540_00405 PF02829 3H domain JG540_00405 PF08279 HTH domain JG540_00410 PF00462 Glutaredoxin JG540_00415 PF07972 NrdI Flavodoxin like JG540_00420 PF00317 Ribonucleotide reductase, all-alpha domain JG540_00420 PF02867 Ribonucleotide reductase, barrel domain JG540_00420 PF08343 Ribonucleotide reductase N-terminal JG540_00445 PF01930 Domain of unknown function DUF83 JG540_00445 PF01867 CRISPR associated protein Cas1 JG540_00450 PF09827 CRISPR associated protein Cas2 JG540_00455 PF00561 alpha/beta hydrolase fold JG540_00475 PF00268 Ribonucleotide reductase, small chain JG540_00490 PF01226 Formate/nitrite transporter JG540_00535 PF01451 Low molecular weight phosphotyrosine protein phosphatase JG540_00545 PF00005 ABC transporter JG540_00545 PF09383 NIL domain JG540_00550 PF00528 Binding-protein-dependent transport system inner membrane component JG540_00560 PF00223 Photosystem I psaA/psaB protein JG540_00560 PF00691 OmpA family JG540_00585 PF04151 Bacterial pre-peptidase C-terminal domain JG540_00585 PF00082 Subtilase family JG540_00590 PF02754 Cysteine-rich domain JG540_00590 PF13183 4Fe-4S dicluster domain JG540_00590 PF02665 Nitrate reductase gamma subunit JG540_00620 PF00528 Binding-protein-dependent transport system inner membrane component JG540_00625 PF00005 ABC transporter JG540_00625 PF08402 TOBE domain JG540_00630 PF00528 Binding-protein-dependent transport system inner membrane component JG540_00630 PF12911 N-terminal TM domain of oligopeptide transport permease C JG540_00635 PF00528 Binding-protein-dependent transport system inner membrane component JG540_00645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JG540_00645 PF00005 ABC transporter JG540_00700 PF00005 ABC transporter JG540_00700 PF08402 TOBE domain JG540_00705 PF00528 Binding-protein-dependent transport system inner membrane component JG540_00715 PF00486 Transcriptional regulatory protein, C terminal JG540_00715 PF00072 Response regulator receiver domain JG540_00720 PF00512 His Kinase A (phospho-acceptor) domain JG540_00720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_00730 PF07690 Major Facilitator Superfamily JG540_00855 PF01032 FecCD transport family JG540_00860 PF00005 ABC transporter JG540_00865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_00865 PF07730 Histidine kinase JG540_00865 PF00672 HAMP domain JG540_00870 PF00072 Response regulator receiver domain JG540_00870 PF00196 Bacterial regulatory proteins, luxR family JG540_00880 PF02627 Carboxymuconolactone decarboxylase family JG540_00890 PF00012 Hsp70 protein JG540_00895 PF01025 GrpE JG540_00900 PF00684 DnaJ central domain JG540_00900 PF00226 DnaJ domain JG540_00900 PF01556 DnaJ C terminal domain JG540_00905 PF13411 MerR HTH family regulatory protein JG540_00935 PF00152 tRNA synthetases class II (D, K and N) JG540_00935 PF01336 OB-fold nucleic acid binding domain JG540_00935 PF16995 Transmembrane region of lysyl-tRNA synthetase JG540_00935 PF09924 Uncharacterised conserved protein (DUF2156) JG540_00950 PF10431 C-terminal, D2-small domain, of ClpB protein JG540_00950 PF00004 ATPase family associated with various cellular activities (AAA) JG540_00950 PF07724 AAA domain (Cdc48 subfamily) JG540_00950 PF17871 AAA lid domain JG540_00950 PF02861 Clp amino terminal domain, pathogenicity island component JG540_00955 PF08360 QacR-like protein, C-terminal region JG540_00955 PF00440 Bacterial regulatory proteins, tetR family JG540_00960 PF03009 Glycerophosphoryl diester phosphodiesterase family JG540_00965 PF02540 NAD synthase JG540_00965 PF00795 Carbon-nitrogen hydrolase JG540_01005 PF00274 Fructose-bisphosphate aldolase class-I JG540_01010 PF02542 YgbB family JG540_01020 PF09190 DALR domain JG540_01020 PF01406 tRNA synthetases class I (C) catalytic domain JG540_01025 PF08032 RNA 2'-O ribose methyltransferase substrate binding JG540_01025 PF00588 SpoU rRNA Methylase family JG540_01045 PF00005 ABC transporter JG540_01045 PF17912 MalK OB fold domain JG540_01050 PF13570 PQQ-like domain JG540_01050 PF00069 Protein kinase domain JG540_01050 PF13360 PQQ-like domain JG540_01050 PF01011 PQQ enzyme repeat JG540_01065 PF03167 Uracil DNA glycosylase superfamily JG540_01090 PF13091 PLD-like domain JG540_01090 PF13396 Phospholipase_D-nuclease N-terminal JG540_01095 PF00270 DEAD/DEAH box helicase JG540_01095 PF11898 Domain of unknown function (DUF3418) JG540_01095 PF04408 Helicase associated domain (HA2) JG540_01095 PF00271 Helicase conserved C-terminal domain JG540_01095 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JG540_01110 PF08267 Cobalamin-independent synthase, N-terminal domain JG540_01110 PF01717 Cobalamin-independent synthase, Catalytic domain JG540_01115 PF03932 CutC family JG540_01120 PF00664 ABC transporter transmembrane region JG540_01120 PF00005 ABC transporter JG540_01125 PF00664 ABC transporter transmembrane region JG540_01125 PF00005 ABC transporter JG540_01130 PF01545 Cation efflux family JG540_01130 PF16916 Dimerisation domain of Zinc Transporter JG540_01135 PF03458 UPF0126 domain JG540_01150 PF01580 FtsK/SpoIIIE family JG540_01185 PF01129 NAD:arginine ADP-ribosyltransferase JG540_01205 PF09594 Glycosyltransferase family 87 JG540_01235 PF17863 AAA lid domain JG540_01235 PF07726 ATPase family associated with various cellular activities (AAA) JG540_01285 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) JG540_01295 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase JG540_01295 PF13088 BNR repeat-like domain JG540_01295 PF00754 F5/8 type C domain JG540_01300 PF00929 Exonuclease JG540_01300 PF11490 DNA polymerase III polC-type N-terminus II JG540_01300 PF02811 PHP domain JG540_01300 PF14579 Helix-hairpin-helix motif JG540_01300 PF07733 Bacterial DNA polymerase III alpha NTPase domain JG540_01300 PF14480 DNA polymerase III polC-type N-terminus I JG540_01300 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JG540_01310 PF00728 Glycosyl hydrolase family 20, catalytic domain JG540_01310 PF02838 Glycosyl hydrolase family 20, domain 2 JG540_01315 PF00881 Nitroreductase family JG540_01335 PF00528 Binding-protein-dependent transport system inner membrane component JG540_01340 PF00528 Binding-protein-dependent transport system inner membrane component JG540_01345 PF00106 short chain dehydrogenase JG540_01350 PF08534 Redoxin JG540_01360 PF02335 Cytochrome c552 JG540_01370 PF02683 Cytochrome C biogenesis protein transmembrane region JG540_01375 PF05140 ResB-like family JG540_01380 PF01578 Cytochrome C assembly protein JG540_01385 PF00578 AhpC/TSA family JG540_01390 PF00156 Phosphoribosyl transferase domain JG540_01395 PF08032 RNA 2'-O ribose methyltransferase substrate binding JG540_01395 PF00588 SpoU rRNA Methylase family JG540_01400 PF01116 Fructose-bisphosphate aldolase class-II JG540_01410 PF00528 Binding-protein-dependent transport system inner membrane component JG540_01415 PF00528 Binding-protein-dependent transport system inner membrane component JG540_01430 PF00709 Adenylosuccinate synthetase JG540_01450 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain JG540_01450 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain JG540_01470 PF00128 Alpha amylase, catalytic domain JG540_01470 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JG540_01475 PF01066 CDP-alcohol phosphatidyltransferase JG540_01485 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JG540_01485 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JG540_01490 PF00565 Staphylococcal nuclease homologue JG540_01490 PF00149 Calcineurin-like phosphoesterase JG540_01490 PF00746 LPXTG cell wall anchor motif JG540_01490 PF02872 5'-nucleotidase, C-terminal domain JG540_01500 PF17876 Cold shock domain JG540_01500 PF00773 RNB domain JG540_01500 PF00575 S1 RNA binding domain JG540_01505 PF02687 FtsX-like permease family JG540_01505 PF12704 MacB-like periplasmic core domain JG540_01505 PF00005 ABC transporter JG540_01515 PF07690 Major Facilitator Superfamily JG540_01520 PF00440 Bacterial regulatory proteins, tetR family JG540_01545 PF00933 Glycosyl hydrolase family 3 N terminal domain JG540_01550 PF02687 FtsX-like permease family JG540_01550 PF12704 MacB-like periplasmic core domain JG540_01555 PF12704 MacB-like periplasmic core domain JG540_01555 PF02687 FtsX-like permease family JG540_01555 PF00005 ABC transporter JG540_01610 PF01641 SelR domain JG540_01625 PF00106 short chain dehydrogenase JG540_01645 PF00270 DEAD/DEAH box helicase JG540_01645 PF00271 Helicase conserved C-terminal domain JG540_01680 PF13089 Polyphosphate kinase N-terminal domain JG540_01680 PF02503 Polyphosphate kinase middle domain JG540_01680 PF13090 Polyphosphate kinase C-terminal domain 2 JG540_01680 PF17941 Polyphosphate kinase C-terminal domain 1 JG540_01685 PF00293 NUDIX domain JG540_01685 PF00300 Histidine phosphatase superfamily (branch 1) JG540_01695 PF00486 Transcriptional regulatory protein, C terminal JG540_01710 PF01571 Aminomethyltransferase folate-binding domain JG540_01725 PF02580 D-Tyr-tRNA(Tyr) deacylase JG540_01735 PF02896 PEP-utilising enzyme, TIM barrel domain JG540_01735 PF00391 PEP-utilising enzyme, mobile domain JG540_01735 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JG540_01750 PF00561 alpha/beta hydrolase fold JG540_01755 PF01053 Cys/Met metabolism PLP-dependent enzyme JG540_01760 PF00877 NlpC/P60 family JG540_01765 PF00719 Inorganic pyrophosphatase JG540_01770 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JG540_01785 PF01867 CRISPR associated protein Cas1 JG540_01790 PF09827 CRISPR associated protein Cas2 JG540_01835 PF00156 Phosphoribosyl transferase domain JG540_01850 PF00004 ATPase family associated with various cellular activities (AAA) JG540_01850 PF01434 Peptidase family M41 JG540_01850 PF17862 AAA+ lid domain JG540_01855 PF01227 GTP cyclohydrolase I JG540_01865 PF00072 Response regulator receiver domain JG540_01865 PF00196 Bacterial regulatory proteins, luxR family JG540_01875 PF00005 ABC transporter JG540_01875 PF02687 FtsX-like permease family JG540_01875 PF12704 MacB-like periplasmic core domain JG540_01880 PF00809 Pterin binding enzyme JG540_01885 PF02152 Dihydroneopterin aldolase JG540_01910 PF00152 tRNA synthetases class II (D, K and N) JG540_01910 PF01336 OB-fold nucleic acid binding domain JG540_01915 PF02261 Aspartate decarboxylase JG540_01920 PF02569 Pantoate-beta-alanine ligase JG540_01930 PF01070 FMN-dependent dehydrogenase JG540_01940 PF02589 LUD domain JG540_01945 PF11870 Domain of unknown function (DUF3390) JG540_01945 PF02589 LUD domain JG540_01945 PF13183 4Fe-4S dicluster domain JG540_01950 PF02754 Cysteine-rich domain JG540_01960 PF02652 L-lactate permease JG540_01970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JG540_01970 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_01975 PF02583 Metal-sensitive transcriptional repressor JG540_01980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JG540_01980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JG540_01985 PF00230 Major intrinsic protein JG540_01990 PF04324 BFD-like [2Fe-2S] binding domain JG540_01990 PF01266 FAD dependent oxidoreductase JG540_01995 PF00890 FAD binding domain JG540_02000 PF13183 4Fe-4S dicluster domain JG540_02000 PF02754 Cysteine-rich domain JG540_02005 PF13936 Helix-turn-helix domain JG540_02005 PF04198 Putative sugar-binding domain JG540_02015 PF18073 Rubredoxin metal binding domain JG540_02020 PF00456 Transketolase, thiamine diphosphate binding domain JG540_02020 PF02780 Transketolase, C-terminal domain JG540_02020 PF02779 Transketolase, pyrimidine binding domain JG540_02030 PF01263 Aldose 1-epimerase JG540_02035 PF02080 TrkA-C domain JG540_02035 PF02254 TrkA-N domain JG540_02040 PF02386 Cation transport protein JG540_02045 PF12728 Helix-turn-helix domain JG540_02055 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JG540_02055 PF01565 FAD binding domain JG540_02065 PF00962 Adenosine/AMP deaminase JG540_02075 PF01235 Sodium:alanine symporter family JG540_02080 PF00155 Aminotransferase class I and II JG540_02095 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JG540_02100 PF02357 Transcription termination factor nusG JG540_02105 PF00298 Ribosomal protein L11, RNA binding domain JG540_02105 PF03946 Ribosomal protein L11, N-terminal domain JG540_02110 PF00687 Ribosomal protein L1p/L10e family JG540_02115 PF00223 Photosystem I psaA/psaB protein JG540_02115 PF00691 OmpA family JG540_02120 PF00691 OmpA family JG540_02120 PF05736 OprF membrane domain JG540_02140 PF00069 Protein kinase domain JG540_02145 PF00691 OmpA family JG540_02150 PF00466 Ribosomal protein L10 JG540_02155 PF00542 Ribosomal protein L7/L12 C-terminal domain JG540_02155 PF16320 Ribosomal protein L7/L12 dimerisation domain JG540_02165 PF00562 RNA polymerase Rpb2, domain 6 JG540_02165 PF10385 RNA polymerase beta subunit external 1 domain JG540_02165 PF04561 RNA polymerase Rpb2, domain 2 JG540_02165 PF04563 RNA polymerase beta subunit JG540_02165 PF04560 RNA polymerase Rpb2, domain 7 JG540_02165 PF04565 RNA polymerase Rpb2, domain 3 JG540_02170 PF04997 RNA polymerase Rpb1, domain 1 JG540_02170 PF04998 RNA polymerase Rpb1, domain 5 JG540_02170 PF05000 RNA polymerase Rpb1, domain 4 JG540_02170 PF00623 RNA polymerase Rpb1, domain 2 JG540_02170 PF04983 RNA polymerase Rpb1, domain 3 JG540_02180 PF17863 AAA lid domain JG540_02180 PF07726 ATPase family associated with various cellular activities (AAA) JG540_02210 PF00069 Protein kinase domain JG540_02210 PF03793 PASTA domain JG540_02220 PF01580 FtsK/SpoIIIE family JG540_02220 PF12538 DNA transporter JG540_02310 PF00164 Ribosomal protein S12/S23 JG540_02315 PF00177 Ribosomal protein S7p/S5e JG540_02320 PF03144 Elongation factor Tu domain 2 JG540_02320 PF00009 Elongation factor Tu GTP binding domain JG540_02320 PF03764 Elongation factor G, domain IV JG540_02320 PF14492 Elongation Factor G, domain II JG540_02320 PF00679 Elongation factor G C-terminus JG540_02325 PF00009 Elongation factor Tu GTP binding domain JG540_02325 PF03144 Elongation factor Tu domain 2 JG540_02325 PF03143 Elongation factor Tu C-terminal domain JG540_02345 PF00746 LPXTG cell wall anchor motif JG540_02345 PF16555 Gram-positive pilin subunit D1, N-terminal domain JG540_02350 PF00746 LPXTG cell wall anchor motif JG540_02350 PF16555 Gram-positive pilin subunit D1, N-terminal domain JG540_02355 PF04203 Sortase domain JG540_02370 PF00746 LPXTG cell wall anchor motif JG540_02370 PF16555 Gram-positive pilin subunit D1, N-terminal domain JG540_02380 PF00338 Ribosomal protein S10p/S20e JG540_02385 PF00297 Ribosomal protein L3 JG540_02390 PF00573 Ribosomal protein L4/L1 family JG540_02395 PF00276 Ribosomal protein L23 JG540_02400 PF03947 Ribosomal Proteins L2, C-terminal domain JG540_02400 PF00181 Ribosomal Proteins L2, RNA binding domain JG540_02405 PF00203 Ribosomal protein S19 JG540_02410 PF00237 Ribosomal protein L22p/L17e JG540_02415 PF00189 Ribosomal protein S3, C-terminal domain JG540_02415 PF07650 KH domain JG540_02420 PF00252 Ribosomal protein L16p/L10e JG540_02425 PF00831 Ribosomal L29 protein JG540_02430 PF00366 Ribosomal protein S17 JG540_02435 PF00238 Ribosomal protein L14p/L23e JG540_02440 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JG540_02445 PF00281 Ribosomal protein L5 JG540_02445 PF00673 ribosomal L5P family C-terminus JG540_02450 PF00253 Ribosomal protein S14p/S29e JG540_02455 PF00410 Ribosomal protein S8 JG540_02460 PF00347 Ribosomal protein L6 JG540_02465 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JG540_02470 PF00333 Ribosomal protein S5, N-terminal domain JG540_02470 PF03719 Ribosomal protein S5, C-terminal domain JG540_02475 PF00327 Ribosomal protein L30p/L7e JG540_02480 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JG540_02485 PF00344 SecY translocase JG540_02495 PF00557 Metallopeptidase family M24 JG540_02510 PF01176 Translation initiation factor 1A / IF-1 JG540_02515 PF00444 Ribosomal protein L36 JG540_02520 PF00416 Ribosomal protein S13/S18 JG540_02525 PF00411 Ribosomal protein S11 JG540_02530 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JG540_02530 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JG540_02530 PF01000 RNA polymerase Rpb3/RpoA insert domain JG540_02535 PF01196 Ribosomal protein L17 JG540_02555 PF01416 tRNA pseudouridine synthase JG540_02560 PF00572 Ribosomal protein L13 JG540_02565 PF00380 Ribosomal protein S9/S16 JG540_02570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JG540_02570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JG540_02570 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JG540_02570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JG540_02575 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_02575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JG540_02575 PF00403 Heavy-metal-associated domain JG540_02580 PF00485 Phosphoribulokinase / Uridine kinase family JG540_02585 PF01380 SIS domain JG540_02590 PF01648 4'-phosphopantetheinyl transferase superfamily JG540_02595 PF03853 YjeF-related protein N-terminus JG540_02595 PF01256 Carbohydrate kinase JG540_02600 PF00842 Alanine racemase, C-terminal domain JG540_02600 PF01168 Alanine racemase, N-terminal domain JG540_02605 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JG540_02615 PF00814 Glycoprotease family JG540_02620 PF00583 Acetyltransferase (GNAT) family JG540_02630 PF00890 FAD binding domain JG540_02630 PF02910 Fumarate reductase flavoprotein C-term JG540_02635 PF13085 2Fe-2S iron-sulfur cluster binding domain JG540_02635 PF13183 4Fe-4S dicluster domain JG540_02660 PF00814 Glycoprotease family JG540_02665 PF18096 THUMP domain-like JG540_02670 PF02698 DUF218 domain JG540_02675 PF00166 Chaperonin 10 Kd subunit JG540_02680 PF02467 Transcription factor WhiB JG540_02685 PF00478 IMP dehydrogenase / GMP reductase domain JG540_02685 PF00571 CBS domain JG540_02705 PF00478 IMP dehydrogenase / GMP reductase domain JG540_02715 PF00075 RNase H JG540_02720 PF00871 Acetokinase family JG540_02725 PF07085 DRTGG domain JG540_02725 PF01515 Phosphate acetyl/butaryl transferase JG540_02730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JG540_02730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JG540_02735 PF00923 Transaldolase/Fructose-6-phosphate aldolase JG540_02750 PF00392 Bacterial regulatory proteins, gntR family JG540_02750 PF07702 UTRA domain JG540_02755 PF00294 pfkB family carbohydrate kinase JG540_02765 PF04962 KduI/IolB family JG540_02770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JG540_02770 PF00205 Thiamine pyrophosphate enzyme, central domain JG540_02770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JG540_02775 PF00171 Aldehyde dehydrogenase family JG540_02780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JG540_02780 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JG540_02785 PF00005 ABC transporter JG540_02790 PF02653 Branched-chain amino acid transport system / permease component JG540_02795 PF13407 Periplasmic binding protein domain JG540_02800 PF00107 Zinc-binding dehydrogenase JG540_02800 PF08240 Alcohol dehydrogenase GroES-like domain JG540_02805 PF01261 Xylose isomerase-like TIM barrel JG540_02815 PF00117 Glutamine amidotransferase class-I JG540_02815 PF00958 GMP synthase C terminal domain JG540_02815 PF02540 NAD synthase JG540_02830 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JG540_02830 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JG540_02835 PF03551 Transcriptional regulator PadR-like family JG540_02835 PF13847 Methyltransferase domain JG540_02840 PF00857 Isochorismatase family JG540_02845 PF00005 ABC transporter JG540_02850 PF00128 Alpha amylase, catalytic domain JG540_02850 PF09154 Domain of unknown function (DUF1939) JG540_02875 PF00196 Bacterial regulatory proteins, luxR family JG540_02875 PF00072 Response regulator receiver domain JG540_02890 PF01300 Telomere recombination JG540_02895 PF00953 Glycosyl transferase family 4 JG540_02905 PF00119 ATP synthase A chain JG540_02910 PF00137 ATP synthase subunit C JG540_02915 PF00430 ATP synthase B/B' CF(0) JG540_02920 PF00213 ATP synthase delta (OSCP) subunit JG540_02920 PF00430 ATP synthase B/B' CF(0) JG540_02925 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JG540_02925 PF00306 ATP synthase alpha/beta chain, C terminal domain JG540_02925 PF02874 ATP synthase alpha/beta family, beta-barrel domain JG540_02930 PF00231 ATP synthase JG540_02935 PF02874 ATP synthase alpha/beta family, beta-barrel domain JG540_02935 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JG540_02940 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JG540_02950 PF01939 Endonuclease NucS JG540_02960 PF01979 Amidohydrolase family JG540_02965 PF00484 Carbonic anhydrase JG540_02970 PF00551 Formyl transferase JG540_02985 PF01867 CRISPR associated protein Cas1 JG540_03000 PF09344 CT1975-like protein JG540_03010 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) JG540_03015 PF18395 Cas3 C-terminal domain JG540_03015 PF00270 DEAD/DEAH box helicase JG540_03015 PF18019 HD domain JG540_03020 PF00444 Ribosomal protein L36 JG540_03025 PF01197 Ribosomal protein L31 JG540_03030 PF00253 Ribosomal protein S14p/S29e JG540_03035 PF00471 Ribosomal protein L33 JG540_03040 PF00830 Ribosomal L28 family JG540_03050 PF00464 Serine hydroxymethyltransferase JG540_03055 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JG540_03055 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JG540_03060 PF00708 Acylphosphatase JG540_03070 PF12704 MacB-like periplasmic core domain JG540_03070 PF02687 FtsX-like permease family JG540_03075 PF02687 FtsX-like permease family JG540_03075 PF12704 MacB-like periplasmic core domain JG540_03075 PF00005 ABC transporter JG540_03085 PF10509 Galactokinase galactose-binding signature JG540_03085 PF08544 GHMP kinases C terminal JG540_03085 PF00288 GHMP kinases N terminal domain JG540_03090 PF00455 DeoR C terminal sensor domain JG540_03090 PF08220 DeoR-like helix-turn-helix domain JG540_03105 PF01050 Mannose-6-phosphate isomerase JG540_03105 PF00483 Nucleotidyl transferase JG540_03115 PF07687 Peptidase dimerisation domain JG540_03115 PF01546 Peptidase family M20/M25/M40 JG540_03125 PF01297 Zinc-uptake complex component A periplasmic JG540_03130 PF00005 ABC transporter JG540_03145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JG540_03145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JG540_03145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JG540_03145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JG540_03150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JG540_03150 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_03155 PF03641 Possible lysine decarboxylase JG540_03165 PF01596 O-methyltransferase JG540_03175 PF01883 Iron-sulfur cluster assembly protein JG540_03175 PF10609 NUBPL iron-transfer P-loop NTPase JG540_03185 PF00571 CBS domain JG540_03185 PF01769 Divalent cation transporter JG540_03185 PF03448 MgtE intracellular N domain JG540_03195 PF01261 Xylose isomerase-like TIM barrel JG540_03200 PF01545 Cation efflux family JG540_03205 PF01022 Bacterial regulatory protein, arsR family JG540_03210 PF00557 Metallopeptidase family M24 JG540_03210 PF05195 Aminopeptidase P, N-terminal domain JG540_03220 PF01914 MarC family integral membrane protein JG540_03225 PF01384 Phosphate transporter family JG540_03230 PF00270 DEAD/DEAH box helicase JG540_03230 PF00271 Helicase conserved C-terminal domain JG540_03245 PF04237 YjbR JG540_03250 PF00206 Lyase JG540_03250 PF10415 Fumarase C C-terminus JG540_03255 PF08240 Alcohol dehydrogenase GroES-like domain JG540_03255 PF00107 Zinc-binding dehydrogenase JG540_03260 PF00206 Lyase JG540_03260 PF10415 Fumarase C C-terminus JG540_03270 PF00571 CBS domain JG540_03270 PF00005 ABC transporter JG540_03275 PF00528 Binding-protein-dependent transport system inner membrane component JG540_03295 PF00186 Dihydrofolate reductase JG540_03300 PF00303 Thymidylate synthase JG540_03310 PF02566 OsmC-like protein JG540_03320 PF07568 Histidine kinase JG540_03320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_03320 PF12282 Signal transduction histidine kinase JG540_03325 PF02467 Transcription factor WhiB JG540_03330 PF01580 FtsK/SpoIIIE family JG540_03330 PF12538 DNA transporter JG540_03335 PF00533 BRCA1 C Terminus (BRCT) domain JG540_03335 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JG540_03335 PF03120 NAD-dependent DNA ligase OB-fold domain JG540_03335 PF01653 NAD-dependent DNA ligase adenylation domain JG540_03335 PF12826 Helix-hairpin-helix motif JG540_03345 PF02686 Glu-tRNAGln amidotransferase C subunit JG540_03350 PF01425 Amidase JG540_03355 PF02637 GatB domain JG540_03355 PF02934 GatB/GatE catalytic domain JG540_03360 PF03949 Malic enzyme, NAD binding domain JG540_03360 PF00390 Malic enzyme, N-terminal domain JG540_03385 PF02080 TrkA-C domain JG540_03385 PF06826 Predicted Permease Membrane Region JG540_03390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JG540_03390 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JG540_03390 PF00205 Thiamine pyrophosphate enzyme, central domain JG540_03395 PF01842 ACT domain JG540_03395 PF10369 Small subunit of acetolactate synthase JG540_03400 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JG540_03400 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JG540_03405 PF02463 RecF/RecN/SMC N terminal domain JG540_03415 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JG540_03415 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JG540_03415 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JG540_03420 PF00180 Isocitrate/isopropylmalate dehydrogenase JG540_03435 PF01063 Amino-transferase class IV JG540_03440 PF13614 AAA domain JG540_03440 PF13807 G-rich domain on putative tyrosine kinase JG540_03440 PF02706 Chain length determinant protein JG540_03445 PF01451 Low molecular weight phosphotyrosine protein phosphatase JG540_03450 PF02397 Bacterial sugar transferase JG540_03465 PF04991 LicD family JG540_03470 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JG540_03495 PF03816 Cell envelope-related transcriptional attenuator domain JG540_03510 PF02350 UDP-N-acetylglucosamine 2-epimerase JG540_03535 PF17782 DprA winged helix domain JG540_03535 PF02481 DNA recombination-mediator protein A JG540_03560 PF00929 Exonuclease JG540_03565 PF01061 ABC-2 type transporter JG540_03565 PF00005 ABC transporter JG540_03565 PF00498 FHA domain JG540_03590 PF00005 ABC transporter JG540_03595 PF02687 FtsX-like permease family JG540_03595 PF18075 FtsX extracellular domain JG540_03605 PF01668 SmpB protein JG540_03615 PF00860 Permease family JG540_03635 PF07729 FCD domain JG540_03635 PF00392 Bacterial regulatory proteins, gntR family JG540_03640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JG540_03645 PF00528 Binding-protein-dependent transport system inner membrane component JG540_03650 PF00005 ABC transporter JG540_03650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JG540_03655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JG540_03655 PF00005 ABC transporter JG540_03660 PF00701 Dihydrodipicolinate synthetase family JG540_03665 PF00480 ROK family JG540_03670 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase JG540_03675 PF00216 Bacterial DNA-binding protein JG540_03680 PF00005 ABC transporter JG540_03680 PF13732 Domain of unknown function (DUF4162) JG540_03690 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JG540_03700 PF04851 Type III restriction enzyme, res subunit JG540_03705 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JG540_03705 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JG540_03710 PF02617 ATP-dependent Clp protease adaptor protein ClpS JG540_03720 PF01177 Asp/Glu/Hydantoin racemase JG540_03725 PF12706 Beta-lactamase superfamily domain JG540_03750 PF01725 Ham1 family JG540_03755 PF03725 3' exoribonuclease family, domain 2 JG540_03755 PF01138 3' exoribonuclease family, domain 1 JG540_03775 PF00578 AhpC/TSA family JG540_03800 PF00561 alpha/beta hydrolase fold JG540_03810 PF03733 Inner membrane component domain JG540_03815 PF00005 ABC transporter JG540_03835 PF01235 Sodium:alanine symporter family JG540_03840 PF01235 Sodium:alanine symporter family JG540_03845 PF01235 Sodium:alanine symporter family JG540_03850 PF01235 Sodium:alanine symporter family JG540_03855 PF01557 Fumarylacetoacetate (FAA) hydrolase family JG540_03860 PF00155 Aminotransferase class I and II JG540_03865 PF00749 tRNA synthetases class I (E and Q), catalytic domain JG540_03890 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JG540_03890 PF12706 Beta-lactamase superfamily domain JG540_03890 PF17770 Ribonuclease J C-terminal domain JG540_03900 PF17854 FtsK alpha domain JG540_03900 PF01580 FtsK/SpoIIIE family JG540_03900 PF09397 Ftsk gamma domain JG540_03910 PF01066 CDP-alcohol phosphatidyltransferase JG540_03915 PF02464 Competence-damaged protein JG540_03915 PF18146 Damage-inducible protein CinA KH domain JG540_03915 PF00994 Probable molybdopterin binding domain JG540_03930 PF00154 recA bacterial DNA recombination protein JG540_03935 PF02631 RecX family JG540_03950 PF01268 Formate--tetrahydrofolate ligase JG540_03955 PF00919 Uncharacterized protein family UPF0004 JG540_03955 PF04055 Radical SAM superfamily JG540_03970 PF01678 Diaminopimelate epimerase JG540_03975 PF05525 Branched-chain amino acid transport protein JG540_03980 PF05175 Methyltransferase small domain JG540_03980 PF08468 Methyltransferase small domain N-terminal JG540_03985 PF13167 GTP-binding GTPase N-terminal JG540_03985 PF01926 50S ribosome-binding GTPase JG540_03985 PF16360 GTP-binding GTPase Middle Region JG540_03990 PF13307 Helicase C-terminal domain JG540_03995 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JG540_03995 PF00056 lactate/malate dehydrogenase, NAD binding domain JG540_04000 PF01726 LexA DNA binding domain JG540_04000 PF00717 Peptidase S24-like JG540_04010 PF03477 ATP cone domain JG540_04015 PF00728 Glycosyl hydrolase family 20, catalytic domain JG540_04015 PF03173 Putative carbohydrate binding domain JG540_04015 PF02838 Glycosyl hydrolase family 20, domain 2 JG540_04020 PF05173 Dihydrodipicolinate reductase, C-terminus JG540_04020 PF01113 Dihydrodipicolinate reductase, N-terminus JG540_04030 PF00701 Dihydrodipicolinate synthetase family JG540_04035 PF00501 AMP-binding enzyme JG540_04035 PF13193 AMP-binding enzyme C-terminal domain JG540_04055 PF00817 impB/mucB/samB family JG540_04055 PF11799 impB/mucB/samB family C-terminal domain JG540_04065 PF02381 MraZ protein, putative antitoxin-like JG540_04070 PF01795 MraW methylase family JG540_04080 PF03717 Penicillin-binding Protein dimerisation domain JG540_04080 PF00905 Penicillin binding protein transpeptidase domain JG540_04085 PF08245 Mur ligase middle domain JG540_04085 PF02875 Mur ligase family, glutamate ligase domain JG540_04085 PF01225 Mur ligase family, catalytic domain JG540_04090 PF01225 Mur ligase family, catalytic domain JG540_04090 PF02875 Mur ligase family, glutamate ligase domain JG540_04090 PF08245 Mur ligase middle domain JG540_04095 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JG540_04095 PF00953 Glycosyl transferase family 4 JG540_04100 PF08245 Mur ligase middle domain JG540_04100 PF02875 Mur ligase family, glutamate ligase domain JG540_04105 PF01098 Cell cycle protein JG540_04110 PF03033 Glycosyltransferase family 28 N-terminal domain JG540_04110 PF04101 Glycosyltransferase family 28 C-terminal domain JG540_04115 PF08245 Mur ligase middle domain JG540_04115 PF02875 Mur ligase family, glutamate ligase domain JG540_04115 PF01225 Mur ligase family, catalytic domain JG540_04125 PF00091 Tubulin/FtsZ family, GTPase domain JG540_04125 PF12327 FtsZ family, C-terminal domain JG540_04130 PF02578 Multi-copper polyphenol oxidoreductase laccase JG540_04135 PF04472 Cell division protein SepF JG540_04145 PF05103 DivIVA protein JG540_04150 PF01252 Signal peptidase (SPase) II JG540_04155 PF00849 RNA pseudouridylate synthase JG540_04165 PF07733 Bacterial DNA polymerase III alpha NTPase domain JG540_04165 PF14579 Helix-hairpin-helix motif JG540_04165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JG540_04165 PF02811 PHP domain JG540_04185 PF02350 UDP-N-acetylglucosamine 2-epimerase JG540_04200 PF00815 Histidinol dehydrogenase JG540_04205 PF00999 Sodium/hydrogen exchanger family JG540_04210 PF00155 Aminotransferase class I and II JG540_04215 PF00475 Imidazoleglycerol-phosphate dehydratase JG540_04225 PF13191 AAA ATPase domain JG540_04225 PF00069 Protein kinase domain JG540_04235 PF00117 Glutamine amidotransferase class-I JG540_04240 PF00977 Histidine biosynthesis protein JG540_04255 PF01632 Ribosomal protein L35 JG540_04260 PF00453 Ribosomal protein L20 JG540_04270 PF00588 SpoU rRNA Methylase family JG540_04270 PF08032 RNA 2'-O ribose methyltransferase substrate binding JG540_04275 PF00367 phosphotransferase system, EIIB JG540_04275 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JG540_04275 PF02378 Phosphotransferase system, EIIC JG540_04285 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JG540_04285 PF01409 tRNA synthetases class II core domain (F) JG540_04290 PF03484 tRNA synthetase B5 domain JG540_04290 PF03147 Ferredoxin-fold anticodon binding domain JG540_04290 PF01588 Putative tRNA binding domain JG540_04290 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JG540_04290 PF03483 B3/4 domain JG540_04300 PF01316 Arginine repressor, DNA binding domain JG540_04300 PF02863 Arginine repressor, C-terminal domain JG540_04305 PF00764 Arginosuccinate synthase JG540_04315 PF14698 Argininosuccinate lyase C-terminal JG540_04315 PF00206 Lyase JG540_04320 PF02245 Methylpurine-DNA glycosylase (MPG) JG540_04335 PF00579 tRNA synthetases class I (W and Y) JG540_04360 PF13344 Haloacid dehalogenase-like hydrolase JG540_04365 PF01479 S4 domain JG540_04365 PF01728 FtsJ-like methyltransferase JG540_04370 PF01513 ATP-NAD kinase JG540_04375 PF02463 RecF/RecN/SMC N terminal domain JG540_04385 PF11382 Copper transport outer membrane protein, MctB JG540_04405 PF00293 NUDIX domain JG540_04415 PF01458 Uncharacterized protein family (UPF0051) JG540_04420 PF01458 Uncharacterized protein family (UPF0051) JG540_04425 PF00005 ABC transporter JG540_04430 PF00266 Aminotransferase class-V JG540_04435 PF01592 NifU-like N terminal domain JG540_04440 PF01883 Iron-sulfur cluster assembly protein JG540_04470 PF02675 S-adenosylmethionine decarboxylase JG540_04490 PF04228 Putative neutral zinc metallopeptidase JG540_04495 PF01180 Dihydroorotate dehydrogenase JG540_04500 PF11241 Protein of unknown function (DUF3043) JG540_04505 PF01546 Peptidase family M20/M25/M40 JG540_04505 PF07687 Peptidase dimerisation domain JG540_04510 PF02595 Glycerate kinase family JG540_04515 PF00356 Bacterial regulatory proteins, lacI family JG540_04520 PF01966 HD domain JG540_04520 PF13286 Phosphohydrolase-associated domain JG540_04525 PF10410 DnaB-helicase binding domain of primase JG540_04525 PF08278 DNA primase DnaG DnaB-binding JG540_04525 PF13662 Toprim domain JG540_04525 PF08275 DNA primase catalytic core, N-terminal domain JG540_04525 PF01807 CHC2 zinc finger JG540_04530 PF01327 Polypeptide deformylase JG540_04555 PF00109 Beta-ketoacyl synthase, N-terminal domain JG540_04555 PF02801 Beta-ketoacyl synthase, C-terminal domain JG540_04560 PF00550 Phosphopantetheine attachment site JG540_04565 PF00698 Acyl transferase domain JG540_04570 PF13556 PucR C-terminal helix-turn-helix domain JG540_04570 PF17853 GGDEF-like domain JG540_04580 PF17831 Pyruvate dehydrogenase E1 component middle domain JG540_04580 PF00456 Transketolase, thiamine diphosphate binding domain JG540_04585 PF11253 Protein of unknown function (DUF3052) JG540_04600 PF06628 Catalase-related immune-responsive JG540_04600 PF00199 Catalase JG540_04630 PF01784 NIF3 (NGG1p interacting factor 3) JG540_04640 PF03883 Peroxide stress protein YaaA JG540_04655 PF00557 Metallopeptidase family M24 JG540_04665 PF02548 Ketopantoate hydroxymethyltransferase JG540_04670 PF03951 Glutamine synthetase, beta-Grasp domain JG540_04670 PF00120 Glutamine synthetase, catalytic domain JG540_04675 PF03710 Glutamate-ammonia ligase adenylyltransferase JG540_04675 PF08335 GlnD PII-uridylyltransferase JG540_04685 PF00005 ABC transporter JG540_04690 PF00528 Binding-protein-dependent transport system inner membrane component JG540_04695 PF00497 Bacterial extracellular solute-binding proteins, family 3 JG540_04700 PF00120 Glutamine synthetase, catalytic domain JG540_04700 PF03951 Glutamine synthetase, beta-Grasp domain JG540_04710 PF04055 Radical SAM superfamily JG540_04710 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JG540_04715 PF03099 Biotin/lipoate A/B protein ligase family JG540_04720 PF00069 Protein kinase domain JG540_04735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JG540_04735 PF00364 Biotin-requiring enzyme JG540_04735 PF02817 e3 binding domain JG540_04740 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_04740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JG540_04745 PF00883 Cytosol aminopeptidase family, catalytic domain JG540_04745 PF02789 Cytosol aminopeptidase family, N-terminal domain JG540_04765 PF00005 ABC transporter JG540_04770 PF00654 Voltage gated chloride channel JG540_04775 PF00326 Prolyl oligopeptidase family JG540_04780 PF02780 Transketolase, C-terminal domain JG540_04780 PF02779 Transketolase, pyrimidine binding domain JG540_04780 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JG540_04785 PF01228 Glycine radical JG540_04785 PF02901 Pyruvate formate lyase-like JG540_04790 PF02901 Pyruvate formate lyase-like JG540_04790 PF01228 Glycine radical JG540_04795 PF04055 Radical SAM superfamily JG540_04800 PF01612 3'-5' exonuclease JG540_04800 PF00570 HRDC domain JG540_04825 PF01177 Asp/Glu/Hydantoin racemase JG540_04835 PF03129 Anticodon binding domain JG540_04835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JG540_04835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JG540_04840 PF01230 HIT domain JG540_04845 PF01066 CDP-alcohol phosphatidyltransferase JG540_04850 PF03279 Bacterial lipid A biosynthesis acyltransferase JG540_04855 PF13439 Glycosyltransferase Family 4 JG540_04870 PF00293 NUDIX domain JG540_04875 PF01709 Transcriptional regulator JG540_04880 PF02075 Crossover junction endodeoxyribonuclease RuvC JG540_04885 PF07499 RuvA, C-terminal domain JG540_04885 PF01330 RuvA N terminal domain JG540_04890 PF17864 RuvB AAA lid domain JG540_04890 PF05491 RuvB C-terminal winged helix domain JG540_04890 PF05496 Holliday junction DNA helicase RuvB P-loop domain JG540_04900 PF02355 Protein export membrane protein JG540_04900 PF07549 SecD/SecF GG Motif JG540_04905 PF02355 Protein export membrane protein JG540_04905 PF07549 SecD/SecF GG Motif JG540_04910 PF00156 Phosphoribosyl transferase domain JG540_04915 PF02824 TGS domain JG540_04915 PF04607 Region found in RelA / SpoT proteins JG540_04915 PF13291 ACT domain JG540_04925 PF03993 Domain of Unknown Function (DUF349) JG540_04930 PF01209 ubiE/COQ5 methyltransferase family JG540_04935 PF00753 Metallo-beta-lactamase superfamily JG540_04940 PF13393 Histidyl-tRNA synthetase JG540_04940 PF03129 Anticodon binding domain JG540_04950 PF01926 50S ribosome-binding GTPase JG540_04950 PF13167 GTP-binding GTPase N-terminal JG540_04950 PF16360 GTP-binding GTPase Middle Region JG540_04955 PF00271 Helicase conserved C-terminal domain JG540_04955 PF00270 DEAD/DEAH box helicase JG540_04955 PF03880 DbpA RNA binding domain JG540_04980 PF02938 GAD domain JG540_04980 PF01336 OB-fold nucleic acid binding domain JG540_04980 PF00152 tRNA synthetases class II (D, K and N) JG540_04990 PF01300 Telomere recombination JG540_04995 PF03176 MMPL family JG540_05000 PF00004 ATPase family associated with various cellular activities (AAA) JG540_05000 PF16193 AAA C-terminal domain JG540_05000 PF12002 MgsA AAA+ ATPase C terminal JG540_05005 PF01925 Sulfite exporter TauE/SafE JG540_05010 PF01479 S4 domain JG540_05010 PF00163 Ribosomal protein S4/S9 N-terminal domain JG540_05015 PF02272 DHHA1 domain JG540_05015 PF01411 tRNA synthetases class II (A) JG540_05015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JG540_05020 PF03652 Holliday junction resolvase JG540_05025 PF02618 YceG-like family JG540_05030 PF01488 Shikimate / quinate 5-dehydrogenase JG540_05030 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JG540_05030 PF08501 Shikimate dehydrogenase substrate binding domain JG540_05035 PF01264 Chorismate synthase JG540_05040 PF01761 3-dehydroquinate synthase JG540_05040 PF01202 Shikimate kinase JG540_05055 PF01132 Elongation factor P (EF-P) OB domain JG540_05055 PF08207 Elongation factor P (EF-P) KOW-like domain JG540_05055 PF09285 Elongation factor P, C-terminal JG540_05060 PF01029 NusB family JG540_05065 PF00722 Glycosyl hydrolases family 16 JG540_05070 PF00156 Phosphoribosyl transferase domain JG540_05075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JG540_05075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JG540_05080 PF01979 Amidohydrolase family JG540_05085 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JG540_05085 PF00117 Glutamine amidotransferase class-I JG540_05090 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JG540_05090 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JG540_05090 PF02142 MGS-like domain JG540_05095 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JG540_05105 PF00625 Guanylate kinase JG540_05110 PF01192 RNA polymerase Rpb6 JG540_05115 PF02441 Flavoprotein JG540_05115 PF04127 DNA / pantothenate metabolism flavoprotein JG540_05120 PF00438 S-adenosylmethionine synthetase, N-terminal domain JG540_05120 PF02772 S-adenosylmethionine synthetase, central domain JG540_05120 PF02773 S-adenosylmethionine synthetase, C-terminal domain JG540_05125 PF17764 3′ DNA-binding domain (3′BD) JG540_05130 PF17974 Galactose-binding domain-like JG540_05130 PF08305 NPCBM/NEW2 domain JG540_05130 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase JG540_05130 PF17451 Glycosyl hydrolase 101 beta sandwich domain JG540_05130 PF18080 Galactose mutarotase-like fold domain JG540_05130 PF12905 Endo-alpha-N-acetylgalactosaminidase JG540_05135 PF13419 Haloacid dehalogenase-like hydrolase JG540_05140 PF02911 Formyl transferase, C-terminal domain JG540_05140 PF00551 Formyl transferase JG540_05145 PF01029 NusB family JG540_05145 PF01189 16S rRNA methyltransferase RsmB/F JG540_05150 PF00834 Ribulose-phosphate 3 epimerase family JG540_05155 PF02785 Biotin carboxylase C-terminal domain JG540_05155 PF00364 Biotin-requiring enzyme JG540_05155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JG540_05155 PF00289 Biotin carboxylase, N-terminal domain JG540_05160 PF01039 Carboxyl transferase domain JG540_05165 PF02801 Beta-ketoacyl synthase, C-terminal domain JG540_05165 PF00109 Beta-ketoacyl synthase, N-terminal domain JG540_05170 PF01648 4'-phosphopantetheinyl transferase superfamily JG540_05180 PF02733 Dak1 domain JG540_05185 PF02734 DAK2 domain JG540_05190 PF03610 PTS system fructose IIA component JG540_05190 PF05524 PEP-utilising enzyme, N-terminal JG540_05190 PF00391 PEP-utilising enzyme, mobile domain JG540_05190 PF00381 PTS HPr component phosphorylation site JG540_05195 PF00474 Sodium:solute symporter family JG540_05205 PF00528 Binding-protein-dependent transport system inner membrane component JG540_05210 PF09084 NMT1/THI5 like JG540_05215 PF01634 ATP phosphoribosyltransferase JG540_05215 PF08029 HisG, C-terminal domain JG540_05220 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JG540_05225 PF00294 pfkB family carbohydrate kinase JG540_05245 PF02416 mttA/Hcf106 family JG540_05250 PF00902 Sec-independent protein translocase protein (TatC) JG540_05255 PF00781 Diacylglycerol kinase catalytic domain JG540_05260 PF00270 DEAD/DEAH box helicase JG540_05260 PF00271 Helicase conserved C-terminal domain JG540_05260 PF08148 DSHCT (NUC185) domain JG540_05270 PF00795 Carbon-nitrogen hydrolase JG540_05275 PF00535 Glycosyl transferase family 2 JG540_05280 PF13397 RNA polymerase-binding protein JG540_05285 PF00365 Phosphofructokinase JG540_05295 PF02687 FtsX-like permease family JG540_05300 PF00005 ABC transporter JG540_05310 PF00356 Bacterial regulatory proteins, lacI family JG540_05315 PF02378 Phosphotransferase system, EIIC JG540_05315 PF00367 phosphotransferase system, EIIB JG540_05315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JG540_05320 PF00251 Glycosyl hydrolases family 32 N-terminal domain JG540_05320 PF08244 Glycosyl hydrolases family 32 C terminal JG540_05325 PF00012 Hsp70 protein JG540_05330 PF13411 MerR HTH family regulatory protein JG540_05340 PF00376 MerR family regulatory protein JG540_05345 PF00498 FHA domain JG540_05350 PF11838 ERAP1-like C-terminal domain JG540_05350 PF01433 Peptidase family M1 domain JG540_05370 PF01661 Macro domain JG540_05375 PF07883 Cupin domain JG540_05395 PF00342 Phosphoglucose isomerase JG540_05415 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JG540_05415 PF01926 50S ribosome-binding GTPase JG540_05420 PF02153 Prephenate dehydrogenase JG540_05425 PF00849 RNA pseudouridylate synthase JG540_05425 PF01479 S4 domain JG540_05430 PF04079 Segregation and condensation complex subunit ScpB JG540_05435 PF02616 Segregation and condensation protein ScpA JG540_05440 PF13614 AAA domain JG540_05445 PF02899 Phage integrase, N-terminal SAM-like domain JG540_05445 PF00589 Phage integrase family JG540_05450 PF03840 Preprotein translocase SecG subunit JG540_05455 PF00121 Triosephosphate isomerase JG540_05460 PF00162 Phosphoglycerate kinase JG540_05465 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JG540_05465 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JG540_05470 PF02650 WhiA C-terminal HTH domain JG540_05470 PF10298 WhiA N-terminal LAGLIDADG-like domain JG540_05470 PF14527 WhiA LAGLIDADG-like domain JG540_05475 PF01933 Uncharacterised protein family UPF0052 JG540_05480 PF03668 P-loop ATPase protein family JG540_05485 PF00232 Glycosyl hydrolase family 1 JG540_05490 PF02378 Phosphotransferase system, EIIC JG540_05490 PF00367 phosphotransferase system, EIIB JG540_05490 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JG540_05495 PF08459 UvrC Helix-hairpin-helix N-terminal JG540_05495 PF01541 GIY-YIG catalytic domain JG540_05495 PF02151 UvrB/uvrC motif JG540_05535 PF17760 UvrA interaction domain JG540_05535 PF00005 ABC transporter JG540_05535 PF17755 UvrA DNA-binding domain JG540_05550 PF03741 Integral membrane protein TerC family JG540_05555 PF04851 Type III restriction enzyme, res subunit JG540_05555 PF02151 UvrB/uvrC motif JG540_05555 PF00271 Helicase conserved C-terminal domain JG540_05555 PF12344 Ultra-violet resistance protein B JG540_05555 PF17757 UvrB interaction domain JG540_05565 PF01121 Dephospho-CoA kinase JG540_05570 PF00575 S1 RNA binding domain JG540_05575 PF01367 5'-3' exonuclease, C-terminal SAM fold JG540_05575 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JG540_05575 PF00476 DNA polymerase family A JG540_05580 PF03061 Thioesterase superfamily JG540_05585 PF03861 ANTAR domain JG540_05585 PF00072 Response regulator receiver domain JG540_05595 PF02887 Pyruvate kinase, alpha/beta domain JG540_05595 PF00224 Pyruvate kinase, barrel domain JG540_05600 PF01790 Prolipoprotein diacylglyceryl transferase JG540_05605 PF00218 Indole-3-glycerol phosphate synthase JG540_05610 PF03169 OPT oligopeptide transporter protein JG540_05615 PF01502 Phosphoribosyl-AMP cyclohydrolase JG540_05630 PF00977 Histidine biosynthesis protein JG540_05645 PF03136 Pup-ligase protein JG540_05650 PF05639 Pup-like protein JG540_05655 PF03136 Pup-ligase protein JG540_05660 PF17758 Proteasomal ATPase OB N-terminal domain JG540_05660 PF00004 ATPase family associated with various cellular activities (AAA) JG540_05660 PF16450 Proteasomal ATPase OB C-terminal domain JG540_05665 PF08704 tRNA methyltransferase complex GCD14 subunit JG540_05670 PF01522 Polysaccharide deacetylase JG540_05675 PF02163 Peptidase family M50 JG540_05675 PF00571 CBS domain JG540_05685 PF00248 Aldo/keto reductase family JG540_05690 PF07690 Major Facilitator Superfamily JG540_05695 PF00459 Inositol monophosphatase family JG540_05700 PF00356 Bacterial regulatory proteins, lacI family JG540_05710 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_05710 PF18113 Rubredoxin binding C-terminal domain JG540_05715 PF01432 Peptidase family M3 JG540_05730 PF01263 Aldose 1-epimerase JG540_05740 PF01594 AI-2E family transporter JG540_05750 PF00324 Amino acid permease JG540_05770 PF01569 PAP2 superfamily JG540_05785 PF01161 Phosphatidylethanolamine-binding protein JG540_05790 PF00106 short chain dehydrogenase JG540_05795 PF00588 SpoU rRNA Methylase family JG540_05805 PF00388 Phosphatidylinositol-specific phospholipase C, X domain JG540_05810 PF00694 Aconitase C-terminal domain JG540_05810 PF00330 Aconitase family (aconitate hydratase) JG540_05815 PF05958 tRNA (Uracil-5-)-methyltransferase JG540_05815 PF01938 TRAM domain JG540_05825 PF02254 TrkA-N domain JG540_05825 PF02080 TrkA-C domain JG540_05830 PF02080 TrkA-C domain JG540_05830 PF02254 TrkA-N domain JG540_05870 PF00521 DNA gyrase/topoisomerase IV, subunit A JG540_05870 PF03989 DNA gyrase C-terminal domain, beta-propeller JG540_05880 PF00204 DNA gyrase B JG540_05880 PF01751 Toprim domain JG540_05880 PF00986 DNA gyrase B subunit, carboxyl terminus JG540_05880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_05900 PF00140 Sigma-70 factor, region 1.2 JG540_05900 PF04539 Sigma-70 region 3 JG540_05900 PF04545 Sigma-70, region 4 JG540_05900 PF04542 Sigma-70 region 2 JG540_05905 PF00348 Polyprenyl synthetase JG540_05910 PF00069 Protein kinase domain JG540_05910 PF03793 PASTA domain JG540_05915 PF01474 Class-II DAHP synthetase family JG540_05920 PF00365 Phosphofructokinase JG540_05940 PF00929 Exonuclease JG540_05940 PF01541 GIY-YIG catalytic domain JG540_05950 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JG540_05950 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JG540_05960 PF01521 Iron-sulphur cluster biosynthesis JG540_05965 PF12848 ABC transporter JG540_05965 PF00005 ABC transporter JG540_05975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JG540_05975 PF02378 Phosphotransferase system, EIIC JG540_05975 PF00367 phosphotransferase system, EIIB JG540_05980 PF00588 SpoU rRNA Methylase family JG540_05985 PF00664 ABC transporter transmembrane region JG540_05985 PF00005 ABC transporter JG540_05990 PF00664 ABC transporter transmembrane region JG540_05990 PF00005 ABC transporter JG540_05995 PF01145 SPFH domain / Band 7 family JG540_06005 PF00005 ABC transporter JG540_06015 PF13439 Glycosyltransferase Family 4 JG540_06015 PF00534 Glycosyl transferases group 1 JG540_06020 PF00486 Transcriptional regulatory protein, C terminal JG540_06020 PF00072 Response regulator receiver domain JG540_06025 PF00512 His Kinase A (phospho-acceptor) domain JG540_06025 PF07689 KaiB domain JG540_06025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_06035 PF00691 OmpA family JG540_06035 PF00223 Photosystem I psaA/psaB protein JG540_06040 PF00483 Nucleotidyl transferase JG540_06065 PF01207 Dihydrouridine synthase (Dus) JG540_06075 PF03129 Anticodon binding domain JG540_06075 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JG540_06085 PF01297 Zinc-uptake complex component A periplasmic JG540_06090 PF00005 ABC transporter JG540_06095 PF00950 ABC 3 transport family JG540_06105 PF02540 NAD synthase JG540_06105 PF00117 Glutamine amidotransferase class-I JG540_06105 PF00958 GMP synthase C terminal domain JG540_06110 PF04107 Glutamate-cysteine ligase family 2(GCS2) JG540_06115 PF01255 Putative undecaprenyl diphosphate synthase JG540_06120 PF11967 Recombination protein O N terminal JG540_06120 PF02565 Recombination protein O C terminal JG540_06125 PF08502 LeuA allosteric (dimerisation) domain JG540_06125 PF00682 HMGL-like JG540_06130 PF07650 KH domain JG540_06130 PF01926 50S ribosome-binding GTPase JG540_06135 PF00571 CBS domain JG540_06135 PF01595 Cyclin M transmembrane N-terminal domain JG540_06135 PF03471 Transporter associated domain JG540_06140 PF02130 Uncharacterized protein family UPF0054 JG540_06145 PF02562 PhoH-like protein JG540_06160 PF04452 RNA methyltransferase JG540_06165 PF01168 Alanine racemase, N-terminal domain JG540_06170 PF01556 DnaJ C terminal domain JG540_06170 PF00684 DnaJ central domain JG540_06170 PF00226 DnaJ domain JG540_06175 PF08220 DeoR-like helix-turn-helix domain JG540_06175 PF01628 HrcA protein C terminal domain JG540_06190 PF00762 Ferrochelatase JG540_06205 PF04055 Radical SAM superfamily JG540_06210 PF02390 Putative methyltransferase JG540_06215 PF00679 Elongation factor G C-terminus JG540_06215 PF00009 Elongation factor Tu GTP binding domain JG540_06215 PF06421 GTP-binding protein LepA C-terminus JG540_06225 PF00072 Response regulator receiver domain JG540_06225 PF00196 Bacterial regulatory proteins, luxR family JG540_06230 PF07730 Histidine kinase JG540_06230 PF07730 Histidine kinase JG540_06235 PF00005 ABC transporter JG540_06255 PF01649 Ribosomal protein S20 JG540_06260 PF08903 Domain of unknown function (DUF1846) JG540_06265 PF02386 Cation transport protein JG540_06285 PF02645 Uncharacterised protein, DegV family COG1307 JG540_06290 PF05872 Bacterial protein of unknown function (DUF853) JG540_06295 PF09334 tRNA synthetases class I (M) JG540_06295 PF13603 Leucyl-tRNA synthetase, Domain 2 JG540_06295 PF08264 Anticodon-binding domain of tRNA JG540_06300 PF01230 HIT domain JG540_06305 PF02742 Iron dependent repressor, metal binding and dimerisation domain JG540_06305 PF18357 Diphteria toxin repressor SH3 domain JG540_06305 PF01325 Iron dependent repressor, N-terminal DNA binding domain JG540_06330 PF00209 Sodium:neurotransmitter symporter family JG540_06340 PF00480 ROK family JG540_06360 PF00300 Histidine phosphatase superfamily (branch 1) JG540_06375 PF01467 Cytidylyltransferase-like JG540_06380 PF01116 Fructose-bisphosphate aldolase class-II JG540_06385 PF00480 ROK family JG540_06395 PF08220 DeoR-like helix-turn-helix domain JG540_06395 PF00455 DeoR C terminal sensor domain JG540_06400 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain JG540_06400 PF17385 Lacto-N-biose phosphorylase central domain JG540_06400 PF17386 Lacto-N-biose phosphorylase C-terminal domain JG540_06410 PF00534 Glycosyl transferases group 1 JG540_06410 PF13439 Glycosyltransferase Family 4 JG540_06415 PF00664 ABC transporter transmembrane region JG540_06415 PF00005 ABC transporter JG540_06425 PF00512 His Kinase A (phospho-acceptor) domain JG540_06425 PF18719 ArlS sensor domain JG540_06425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_06430 PF00072 Response regulator receiver domain JG540_06430 PF00486 Transcriptional regulatory protein, C terminal JG540_06440 PF00171 Aldehyde dehydrogenase family JG540_06445 PF00696 Amino acid kinase family JG540_06445 PF01472 PUA domain JG540_06450 PF01926 50S ribosome-binding GTPase JG540_06450 PF09269 Domain of unknown function (DUF1967) JG540_06450 PF01018 GTP1/OBG JG540_06455 PF01016 Ribosomal L27 protein JG540_06460 PF00829 Ribosomal prokaryotic L21 protein JG540_06470 PF10150 Ribonuclease E/G family JG540_06475 PF01654 Cytochrome bd terminal oxidase subunit I JG540_06480 PF02322 Cytochrome bd terminal oxidase subunit II JG540_06485 PF00664 ABC transporter transmembrane region JG540_06485 PF00005 ABC transporter JG540_06490 PF00664 ABC transporter transmembrane region JG540_06490 PF00005 ABC transporter JG540_06500 PF00072 Response regulator receiver domain JG540_06500 PF00196 Bacterial regulatory proteins, luxR family JG540_06505 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JG540_06505 PF06827 Zinc finger found in FPG and IleRS JG540_06505 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JG540_06510 PF14622 Ribonuclease-III-like JG540_06510 PF00035 Double-stranded RNA binding motif JG540_06525 PF01467 Cytidylyltransferase-like JG540_06530 PF00356 Bacterial regulatory proteins, lacI family JG540_06535 PF07690 Major Facilitator Superfamily JG540_06545 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JG540_06545 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JG540_06555 PF03781 Sulfatase-modifying factor enzyme 1 JG540_06565 PF00899 ThiF family JG540_06595 PF13193 AMP-binding enzyme C-terminal domain JG540_06595 PF00501 AMP-binding enzyme JG540_06595 PF00668 Condensation domain JG540_06595 PF00550 Phosphopantetheine attachment site JG540_06595 PF00975 Thioesterase domain JG540_06600 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JG540_06600 PF01648 4'-phosphopantetheinyl transferase superfamily JG540_06610 PF00596 Class II Aldolase and Adducin N-terminal domain JG540_06615 PF00291 Pyridoxal-phosphate dependent enzyme JG540_06620 PF17827 PrmC N-terminal domain JG540_06620 PF05175 Methyltransferase small domain JG540_06625 PF17191 RecG wedge domain JG540_06625 PF00271 Helicase conserved C-terminal domain JG540_06625 PF00270 DEAD/DEAH box helicase JG540_06630 PF02734 DAK2 domain JG540_06630 PF13684 Dihydroxyacetone kinase family JG540_06635 PF00830 Ribosomal L28 family JG540_06645 PF16353 Domain of unknown function(DUF4981) JG540_06645 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JG540_06645 PF02929 Beta galactosidase small chain JG540_06645 PF02837 Glycosyl hydrolases family 2, sugar binding domain JG540_06645 PF00703 Glycosyl hydrolases family 2 JG540_06650 PF00356 Bacterial regulatory proteins, lacI family JG540_06655 PF02769 AIR synthase related protein, C-terminal domain JG540_06655 PF00586 AIR synthase related protein, N-terminal domain JG540_06660 PF01820 D-ala D-ala ligase N-terminus JG540_06660 PF07478 D-ala D-ala ligase C-terminus JG540_06670 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JG540_06670 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JG540_06680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JG540_06685 PF00694 Aconitase C-terminal domain JG540_06690 PF00330 Aconitase family (aconitate hydratase) JG540_06705 PF05193 Peptidase M16 inactive domain JG540_06705 PF00675 Insulinase (Peptidase family M16) JG540_06710 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JG540_06710 PF00575 S1 RNA binding domain JG540_06710 PF01138 3' exoribonuclease family, domain 1 JG540_06710 PF00013 KH domain JG540_06715 PF00465 Iron-containing alcohol dehydrogenase JG540_06725 PF00312 Ribosomal protein S15 JG540_06730 PF06574 FAD synthetase JG540_06730 PF01687 Riboflavin kinase JG540_06740 PF02033 Ribosome-binding factor A JG540_06745 PF00892 EamA-like transporter family JG540_06760 PF00009 Elongation factor Tu GTP binding domain JG540_06760 PF04760 Translation initiation factor IF-2, N-terminal region JG540_06760 PF11987 Translation-initiation factor 2 JG540_06770 PF08529 NusA N-terminal domain JG540_06770 PF13184 NusA-like KH domain JG540_06775 PF02576 RimP N-terminal domain JG540_06775 PF17384 RimP C-terminal SH3 domain JG540_06785 PF03129 Anticodon binding domain JG540_06785 PF04073 Aminoacyl-tRNA editing domain JG540_06785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JG540_06795 PF00583 Acetyltransferase (GNAT) family JG540_06800 PF04551 GcpE protein JG540_06805 PF17820 PDZ domain JG540_06805 PF02163 Peptidase family M50 JG540_06810 PF13288 DXP reductoisomerase C-terminal domain JG540_06810 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JG540_06810 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JG540_06820 PF04055 Radical SAM superfamily JG540_06830 PF01765 Ribosome recycling factor JG540_06835 PF00696 Amino acid kinase family JG540_06840 PF01554 MatE JG540_06845 PF00889 Elongation factor TS JG540_06850 PF00318 Ribosomal protein S2 JG540_06855 PF01551 Peptidase family M23 JG540_06860 PF00589 Phage integrase family JG540_06860 PF02899 Phage integrase, N-terminal SAM-like domain JG540_06865 PF02481 DNA recombination-mediator protein A JG540_06865 PF17782 DprA winged helix domain JG540_06870 PF13335 Magnesium chelatase, subunit ChlI C-terminal JG540_06870 PF01078 Magnesium chelatase, subunit ChlI JG540_06875 PF02021 Uncharacterised protein family UPF0102 JG540_06880 PF10611 Protein of unknown function (DUF2469) JG540_06885 PF01351 Ribonuclease HII JG540_06890 PF10502 Signal peptidase, peptidase S26 JG540_06895 PF01245 Ribosomal protein L19 JG540_06905 PF01782 RimM N-terminal domain JG540_06920 PF00886 Ribosomal protein S16 JG540_06925 PF00005 ABC transporter JG540_06935 PF07730 Histidine kinase JG540_06935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_06940 PF00072 Response regulator receiver domain JG540_06940 PF00196 Bacterial regulatory proteins, luxR family JG540_06945 PF01235 Sodium:alanine symporter family JG540_06950 PF01979 Amidohydrolase family JG540_06955 PF02978 Signal peptide binding domain JG540_06955 PF00448 SRP54-type protein, GTPase domain JG540_06955 PF02881 SRP54-type protein, helical bundle domain JG540_06960 PF02881 SRP54-type protein, helical bundle domain JG540_06960 PF00448 SRP54-type protein, GTPase domain JG540_06970 PF06470 SMC proteins Flexible Hinge Domain JG540_06970 PF02463 RecF/RecN/SMC N terminal domain JG540_06980 PF00005 ABC transporter JG540_06985 PF00072 Response regulator receiver domain JG540_06985 PF00196 Bacterial regulatory proteins, luxR family JG540_06990 PF07730 Histidine kinase JG540_06990 PF05231 MASE1 JG540_06990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_06995 PF00135 Carboxylesterase family JG540_07000 PF13732 Domain of unknown function (DUF4162) JG540_07000 PF00005 ABC transporter JG540_07010 PF00334 Nucleoside diphosphate kinase JG540_07015 PF08245 Mur ligase middle domain JG540_07015 PF02875 Mur ligase family, glutamate ligase domain JG540_07035 PF00133 tRNA synthetases class I (I, L, M and V) JG540_07035 PF08264 Anticodon-binding domain of tRNA JG540_07040 PF03807 NADP oxidoreductase coenzyme F420-dependent JG540_07040 PF14748 Pyrroline-5-carboxylate reductase dimerisation JG540_07045 PF00133 tRNA synthetases class I (I, L, M and V) JG540_07045 PF08264 Anticodon-binding domain of tRNA JG540_07050 PF00501 AMP-binding enzyme JG540_07055 PF00501 AMP-binding enzyme JG540_07060 PF01817 Chorismate mutase type II JG540_07060 PF02153 Prephenate dehydrogenase JG540_07065 PF10431 C-terminal, D2-small domain, of ClpB protein JG540_07065 PF07724 AAA domain (Cdc48 subfamily) JG540_07065 PF06689 ClpX C4-type zinc finger JG540_07070 PF00574 Clp protease JG540_07075 PF00574 Clp protease JG540_07080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JG540_07080 PF05697 Bacterial trigger factor protein (TF) JG540_07080 PF05698 Bacterial trigger factor protein (TF) C-terminus JG540_07120 PF01022 Bacterial regulatory protein, arsR family JG540_07135 PF01783 Ribosomal L32p protein family JG540_07140 PF09186 Domain of unknown function (DUF1949) JG540_07140 PF01205 Uncharacterized protein family UPF0029 JG540_07145 PF00291 Pyridoxal-phosphate dependent enzyme JG540_07150 PF00132 Bacterial transferase hexapeptide (six repeats) JG540_07155 PF00561 alpha/beta hydrolase fold JG540_07160 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JG540_07160 PF06827 Zinc finger found in FPG and IleRS JG540_07160 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JG540_07165 PF02502 Ribose/Galactose Isomerase JG540_07170 PF01431 Peptidase family M13 JG540_07170 PF05649 Peptidase family M13 JG540_07185 PF01433 Peptidase family M1 domain JG540_07185 PF11838 ERAP1-like C-terminal domain JG540_07190 PF02378 Phosphotransferase system, EIIC JG540_07195 PF07702 UTRA domain JG540_07195 PF00392 Bacterial regulatory proteins, gntR family JG540_07200 PF00367 phosphotransferase system, EIIB JG540_07205 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JG540_07210 PF02446 4-alpha-glucanotransferase JG540_07215 PF00391 PEP-utilising enzyme, mobile domain JG540_07215 PF05524 PEP-utilising enzyme, N-terminal JG540_07215 PF02896 PEP-utilising enzyme, TIM barrel domain JG540_07230 PF12848 ABC transporter JG540_07230 PF00005 ABC transporter JG540_07235 PF00472 RF-1 domain JG540_07235 PF03462 PCRF domain JG540_07240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JG540_07240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JG540_07240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JG540_07240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JG540_07245 PF01791 DeoC/LacD family aldolase JG540_07250 PF01048 Phosphorylase superfamily JG540_07255 PF04198 Putative sugar-binding domain JG540_07260 PF00591 Glycosyl transferase family, a/b domain JG540_07260 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JG540_07260 PF02885 Glycosyl transferase family, helical bundle domain JG540_07265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JG540_07270 PF02653 Branched-chain amino acid transport system / permease component JG540_07275 PF02653 Branched-chain amino acid transport system / permease component JG540_07285 PF02608 ABC transporter substrate-binding protein PnrA-like JG540_07290 PF03466 LysR substrate binding domain JG540_07290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JG540_07330 PF00437 Type II/IV secretion system protein JG540_07340 PF00580 UvrD/REP helicase N-terminal domain JG540_07340 PF13361 UvrD-like helicase C-terminal domain JG540_07365 PF03699 Uncharacterised protein family (UPF0182) JG540_07380 PF13180 PDZ domain JG540_07380 PF05362 Lon protease (S16) C-terminal proteolytic domain JG540_07390 PF00570 HRDC domain JG540_07390 PF13361 UvrD-like helicase C-terminal domain JG540_07390 PF00580 UvrD/REP helicase N-terminal domain JG540_07395 PF09297 NADH pyrophosphatase zinc ribbon domain JG540_07395 PF00293 NUDIX domain JG540_07395 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain JG540_07400 PF00266 Aminotransferase class-V JG540_07405 PF07580 M26 IgA1-specific Metallo-endopeptidase C-terminal region JG540_07405 PF07501 G5 domain JG540_07405 PF05342 M26 IgA1-specific Metallo-endopeptidase N-terminal region JG540_07405 PF00746 LPXTG cell wall anchor motif JG540_07405 PF04650 YSIRK type signal peptide JG540_07430 PF00766 Electron transfer flavoprotein FAD-binding domain JG540_07430 PF01012 Electron transfer flavoprotein domain JG540_07435 PF01012 Electron transfer flavoprotein domain JG540_07440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JG540_07440 PF00128 Alpha amylase, catalytic domain JG540_07445 PF00579 tRNA synthetases class I (W and Y) JG540_07455 PF00128 Alpha amylase, catalytic domain JG540_07455 PF11896 Domain of unknown function (DUF3416) JG540_07460 PF18085 Maltokinase N-terminal cap domain JG540_07460 PF01636 Phosphotransferase enzyme family JG540_07465 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JG540_07465 PF02806 Alpha amylase, C-terminal all-beta domain JG540_07465 PF00128 Alpha amylase, catalytic domain JG540_07485 PF00343 Carbohydrate phosphorylase JG540_07520 PF00528 Binding-protein-dependent transport system inner membrane component JG540_07525 PF00528 Binding-protein-dependent transport system inner membrane component JG540_07535 PF00056 lactate/malate dehydrogenase, NAD binding domain JG540_07535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JG540_07540 PF00375 Sodium:dicarboxylate symporter family JG540_07550 PF01808 AICARFT/IMPCHase bienzyme JG540_07550 PF02142 MGS-like domain JG540_07555 PF00005 ABC transporter JG540_07570 PF00549 CoA-ligase JG540_07570 PF02629 CoA binding domain JG540_07575 PF08442 ATP-grasp domain JG540_07575 PF00549 CoA-ligase JG540_07580 PF00365 Phosphofructokinase JG540_07585 PF12464 Maltose acetyltransferase JG540_07585 PF00132 Bacterial transferase hexapeptide (six repeats) JG540_07590 PF00128 Alpha amylase, catalytic domain JG540_07595 PF00528 Binding-protein-dependent transport system inner membrane component JG540_07600 PF00528 Binding-protein-dependent transport system inner membrane component JG540_07610 PF00480 ROK family JG540_07615 PF00881 Nitroreductase family JG540_07620 PF00580 UvrD/REP helicase N-terminal domain JG540_07620 PF13361 UvrD-like helicase C-terminal domain JG540_07675 PF07728 AAA domain (dynein-related subfamily) JG540_07680 PF05762 VWA domain containing CoxE-like protein JG540_07690 PF17827 PrmC N-terminal domain JG540_07695 PF03462 PCRF domain JG540_07695 PF00472 RF-1 domain JG540_07700 PF01197 Ribosomal protein L31 JG540_07710 PF07497 Rho termination factor, RNA-binding domain JG540_07710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JG540_07710 PF07498 Rho termination factor, N-terminal domain JG540_07710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JG540_07710 PF07498 Rho termination factor, N-terminal domain JG540_07710 PF07497 Rho termination factor, RNA-binding domain JG540_07715 PF03773 Predicted permease JG540_07730 PF00296 Luciferase-like monooxygenase JG540_07735 PF08447 PAS fold JG540_07735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JG540_07740 PF00288 GHMP kinases N terminal domain JG540_07745 PF03447 Homoserine dehydrogenase, NAD binding domain JG540_07745 PF00742 Homoserine dehydrogenase JG540_07745 PF01842 ACT domain JG540_07750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JG540_07750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JG540_07755 PF03485 Arginyl tRNA synthetase N terminal domain JG540_07755 PF05746 DALR anticodon binding domain JG540_07755 PF00750 tRNA synthetases class I (R) JG540_07765 PF03009 Glycerophosphoryl diester phosphodiesterase family JG540_07770 PF01551 Peptidase family M23 JG540_07770 PF01464 Transglycosylase SLT domain JG540_07770 PF10145 Phage-related minor tail protein JG540_07775 PF00571 CBS domain JG540_07775 PF01595 Cyclin M transmembrane N-terminal domain JG540_07780 PF01595 Cyclin M transmembrane N-terminal domain JG540_07780 PF03471 Transporter associated domain JG540_07780 PF00571 CBS domain JG540_07790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JG540_07790 PF16078 2-oxoglutarate dehydrogenase N-terminus JG540_07790 PF02779 Transketolase, pyrimidine binding domain JG540_07790 PF16870 2-oxoglutarate dehydrogenase C-terminal JG540_07790 PF00676 Dehydrogenase E1 component JG540_07805 PF08281 Sigma-70, region 4 JG540_07805 PF04542 Sigma-70 region 2 JG540_07815 PF03971 Monomeric isocitrate dehydrogenase JG540_07825 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JG540_07830 PF03193 RsgA GTPase JG540_07840 PF00004 ATPase family associated with various cellular activities (AAA) JG540_07840 PF17758 Proteasomal ATPase OB N-terminal domain JG540_07840 PF16450 Proteasomal ATPase OB C-terminal domain JG540_07845 PF03136 Pup-ligase protein JG540_07855 PF03136 Pup-ligase protein JG540_07865 PF00459 Inositol monophosphatase family JG540_07870 PF02673 Bacitracin resistance protein BacA JG540_07875 PF01389 OmpA-like transmembrane domain JG540_07875 PF00691 OmpA family JG540_07885 PF12320 Type 5 capsule protein repressor C-terminal domain JG540_07885 PF00149 Calcineurin-like phosphoesterase JG540_07890 PF13476 AAA domain JG540_07890 PF13476 AAA domain JG540_07890 PF13476 AAA domain JG540_07930 PF07516 SecA Wing and Scaffold domain JG540_07930 PF01043 SecA preprotein cross-linking domain JG540_07930 PF07517 SecA DEAD-like domain JG540_07935 PF00156 Phosphoribosyl transferase domain JG540_07940 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JG540_07940 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JG540_07945 PF10647 Lipoprotein LpqB beta-propeller domain JG540_07945 PF10646 Sporulation and spore germination JG540_07950 PF00512 His Kinase A (phospho-acceptor) domain JG540_07950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_07950 PF00672 HAMP domain JG540_07955 PF00486 Transcriptional regulatory protein, C terminal JG540_07955 PF00072 Response regulator receiver domain JG540_07975 PF17863 AAA lid domain JG540_07975 PF07726 ATPase family associated with various cellular activities (AAA) JG540_07995 PF03966 Trm112p-like protein JG540_08020 PF02467 Transcription factor WhiB JG540_08030 PF01238 Phosphomannose isomerase type I JG540_08035 PF00483 Nucleotidyl transferase JG540_08040 PF00534 Glycosyl transferases group 1 JG540_08040 PF13439 Glycosyltransferase Family 4 JG540_08050 PF04991 LicD family JG540_08055 PF04991 LicD family JG540_08060 PF00892 EamA-like transporter family JG540_08065 PF12804 MobA-like NTP transferase domain JG540_08070 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JG540_08080 PF13439 Glycosyltransferase Family 4 JG540_08080 PF00534 Glycosyl transferases group 1 JG540_08090 PF00535 Glycosyl transferase family 2 JG540_08095 PF14524 Wzt C-terminal domain JG540_08095 PF00005 ABC transporter JG540_08105 PF01370 NAD dependent epimerase/dehydratase family JG540_08135 PF00535 Glycosyl transferase family 2 JG540_08145 PF16363 GDP-mannose 4,6 dehydratase JG540_08190 PF01370 NAD dependent epimerase/dehydratase family JG540_08205 PF09335 SNARE associated Golgi protein JG540_08210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_08210 PF00512 His Kinase A (phospho-acceptor) domain JG540_08215 PF00486 Transcriptional regulatory protein, C terminal JG540_08215 PF00072 Response regulator receiver domain JG540_08220 PF16701 Adenylate cyclase regulatory domain JG540_08220 PF00211 Adenylate and Guanylate cyclase catalytic domain JG540_08230 PF02545 Maf-like protein JG540_08235 PF01039 Carboxyl transferase domain JG540_08240 PF01047 MarR family JG540_08250 PF00471 Ribosomal protein L33 JG540_08270 PF04461 Protein of unknown function (DUF520) JG540_08285 PF00072 Response regulator receiver domain JG540_08285 PF00196 Bacterial regulatory proteins, luxR family JG540_08290 PF07730 Histidine kinase JG540_08295 PF01435 Peptidase family M48 JG540_08300 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JG540_08300 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JG540_08305 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_08310 PF00348 Polyprenyl synthetase JG540_08315 PF00361 Proton-conducting membrane transporter JG540_08320 PF00361 Proton-conducting membrane transporter JG540_08325 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JG540_08325 PF00361 Proton-conducting membrane transporter JG540_08330 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JG540_08340 PF12838 4Fe-4S dicluster domain JG540_08345 PF00146 NADH dehydrogenase JG540_08350 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JG540_08350 PF01568 Molydopterin dinucleotide binding domain JG540_08350 PF00384 Molybdopterin oxidoreductase JG540_08355 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JG540_08355 PF10531 SLBB domain JG540_08355 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JG540_08365 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JG540_08370 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JG540_08375 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JG540_08380 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JG540_08385 PF01209 ubiE/COQ5 methyltransferase family JG540_08390 PF00425 chorismate binding enzyme JG540_08395 PF17820 PDZ domain JG540_08395 PF13180 PDZ domain JG540_08400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JG540_08400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JG540_08405 PF18374 Enolase N-terminal domain-like JG540_08405 PF13378 Enolase C-terminal domain-like JG540_08410 PF00378 Enoyl-CoA hydratase/isomerase JG540_08425 PF04542 Sigma-70 region 2 JG540_08425 PF04545 Sigma-70, region 4 JG540_08430 PF02683 Cytochrome C biogenesis protein transmembrane region JG540_08430 PF17991 Thioredoxin like C-terminal domain JG540_08430 PF00578 AhpC/TSA family JG540_08440 PF01040 UbiA prenyltransferase family JG540_08445 PF00501 AMP-binding enzyme JG540_08445 PF13193 AMP-binding enzyme C-terminal domain JG540_08465 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle JG540_08465 PF14602 Hexapeptide repeat of succinyl-transferase JG540_08475 PF00890 FAD binding domain JG540_08475 PF02910 Fumarate reductase flavoprotein C-term JG540_08485 PF00285 Citrate synthase, C-terminal domain JG540_08490 PF13749 Putative ATP-dependent DNA helicase recG C-terminal JG540_08490 PF00270 DEAD/DEAH box helicase JG540_08490 PF17191 RecG wedge domain JG540_08495 PF00155 Aminotransferase class I and II JG540_08505 PF00037 4Fe-4S binding domain JG540_08510 PF04294 VanW like protein JG540_08515 PF00009 Elongation factor Tu GTP binding domain JG540_08515 PF03144 Elongation factor Tu domain 2 JG540_08515 PF14492 Elongation Factor G, domain II JG540_08515 PF00679 Elongation factor G C-terminus JG540_08530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JG540_08530 PF00005 ABC transporter JG540_08535 PF12911 N-terminal TM domain of oligopeptide transport permease C JG540_08535 PF00528 Binding-protein-dependent transport system inner membrane component JG540_08540 PF00528 Binding-protein-dependent transport system inner membrane component JG540_08545 PF00296 Luciferase-like monooxygenase JG540_08555 PF12146 Serine aminopeptidase, S33 JG540_08565 PF01734 Patatin-like phospholipase JG540_08570 PF02127 Aminopeptidase I zinc metalloprotease (M18) JG540_08605 PF01113 Dihydrodipicolinate reductase, N-terminus JG540_08605 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain JG540_08615 PF07411 Domain of unknown function (DUF1508) JG540_08620 PF06965 Na+/H+ antiporter 1 JG540_08630 PF08241 Methyltransferase domain JG540_08650 PF01926 50S ribosome-binding GTPase JG540_08650 PF06071 Protein of unknown function (DUF933) JG540_08655 PF02646 RmuC family JG540_08665 PF02401 LytB protein JG540_08670 PF02601 Exonuclease VII, large subunit JG540_08670 PF13742 OB-fold nucleic acid binding domain JG540_08675 PF02609 Exonuclease VII small subunit JG540_08680 PF00294 pfkB family carbohydrate kinase JG540_08685 PF13638 PIN domain JG540_08685 PF02562 PhoH-like protein JG540_08690 PF13439 Glycosyltransferase Family 4 JG540_08690 PF00534 Glycosyl transferases group 1 JG540_08700 PF00664 ABC transporter transmembrane region JG540_08700 PF00005 ABC transporter JG540_08710 PF01255 Putative undecaprenyl diphosphate synthase JG540_08715 PF03006 Haemolysin-III related JG540_08720 PF01272 Transcription elongation factor, GreA/GreB, C-term JG540_08720 PF03449 Transcription elongation factor, N-terminal JG540_08725 PF01625 Peptide methionine sulfoxide reductase JG540_08730 PF10011 Predicted membrane protein (DUF2254) JG540_08740 PF03358 NADPH-dependent FMN reductase JG540_08745 PF00585 C-terminal regulatory domain of Threonine dehydratase JG540_08745 PF00291 Pyridoxal-phosphate dependent enzyme JG540_08750 PF00920 Dehydratase family JG540_08755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JG540_08765 PF00005 ABC transporter JG540_08775 PF07730 Histidine kinase JG540_08780 PF00196 Bacterial regulatory proteins, luxR family JG540_08780 PF00072 Response regulator receiver domain JG540_08785 PF01195 Peptidyl-tRNA hydrolase JG540_08790 PF14693 Ribosomal protein TL5, C-terminal domain JG540_08790 PF01386 Ribosomal L25p family JG540_08795 PF01487 Type I 3-dehydroquinase JG540_08800 PF02541 Ppx/GppA phosphatase family JG540_08815 PF03952 Enolase, N-terminal domain JG540_08815 PF00113 Enolase, C-terminal TIM barrel domain JG540_08825 PF00271 Helicase conserved C-terminal domain JG540_08825 PF02559 CarD-like/TRCF domain JG540_08825 PF03461 TRCF domain JG540_08825 PF17757 UvrB interaction domain JG540_08825 PF00270 DEAD/DEAH box helicase JG540_08860 PF13439 Glycosyltransferase Family 4 JG540_08860 PF00534 Glycosyl transferases group 1 JG540_08870 PF02397 Bacterial sugar transferase JG540_08875 PF00294 pfkB family carbohydrate kinase JG540_08875 PF01467 Cytidylyltransferase-like JG540_08880 PF00196 Bacterial regulatory proteins, luxR family JG540_08885 PF14572 Phosphoribosyl synthetase-associated domain JG540_08885 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JG540_08890 PF00132 Bacterial transferase hexapeptide (six repeats) JG540_08890 PF12804 MobA-like NTP transferase domain JG540_08915 PF07726 ATPase family associated with various cellular activities (AAA) JG540_08915 PF17863 AAA lid domain JG540_08935 PF00069 Protein kinase domain JG540_08935 PF13191 AAA ATPase domain JG540_08950 PF00005 ABC transporter JG540_08950 PF16326 ABC transporter C-terminal domain JG540_08950 PF12848 ABC transporter JG540_08955 PF08544 GHMP kinases C terminal JG540_08955 PF00288 GHMP kinases N terminal domain JG540_08960 PF00398 Ribosomal RNA adenine dimethylase JG540_08965 PF06737 Transglycosylase-like domain JG540_08980 PF01026 TatD related DNase JG540_08985 PF09334 tRNA synthetases class I (M) JG540_09000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JG540_09005 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase JG540_09005 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JG540_09035 PF13302 Acetyltransferase (GNAT) domain JG540_09040 PF03453 MoeA N-terminal region (domain I and II) JG540_09040 PF00994 Probable molybdopterin binding domain JG540_09040 PF03454 MoeA C-terminal region (domain IV) JG540_09045 PF01812 5-formyltetrahydrofolate cyclo-ligase family JG540_09055 PF01741 Large-conductance mechanosensitive channel, MscL JG540_09075 PF00582 Universal stress protein family JG540_09080 PF00877 NlpC/P60 family JG540_09085 PF01325 Iron dependent repressor, N-terminal DNA binding domain JG540_09085 PF18357 Diphteria toxin repressor SH3 domain JG540_09085 PF02742 Iron dependent repressor, metal binding and dimerisation domain JG540_09095 PF00860 Permease family JG540_09100 PF11228 Protein of unknown function (DUF3027) JG540_09115 PF04851 Type III restriction enzyme, res subunit JG540_09115 PF00271 Helicase conserved C-terminal domain JG540_09120 PF04536 TPM domain JG540_09125 PF04012 PspA/IM30 family JG540_09135 PF00072 Response regulator receiver domain JG540_09135 PF00486 Transcriptional regulatory protein, C terminal JG540_09140 PF00672 HAMP domain JG540_09140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_09140 PF00512 His Kinase A (phospho-acceptor) domain JG540_09160 PF00118 TCP-1/cpn60 chaperonin family JG540_09165 PF00950 ABC 3 transport family JG540_09170 PF00005 ABC transporter JG540_09180 PF01297 Zinc-uptake complex component A periplasmic JG540_09195 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JG540_09200 PF02559 CarD-like/TRCF domain JG540_09205 PF00486 Transcriptional regulatory protein, C terminal JG540_09205 PF00072 Response regulator receiver domain JG540_09210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JG540_09210 PF00512 His Kinase A (phospho-acceptor) domain JG540_09215 PF00300 Histidine phosphatase superfamily (branch 1) JG540_09220 PF11774 Lsr2 JG540_09230 PF00324 Amino acid permease JG540_09235 PF00710 Asparaginase, N-terminal JG540_09235 PF17763 Glutaminase/Asparaginase C-terminal domain JG540_09240 PF00561 alpha/beta hydrolase fold JG540_09245 PF12169 DNA polymerase III subunits gamma and tau domain III JG540_09250 PF02223 Thymidylate kinase JG540_09260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JG540_09260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JG540_09265 PF00696 Amino acid kinase family JG540_09280 PF00083 Sugar (and other) transporter JG540_09280 PF08946 Osmosensory transporter coiled coil JG540_09290 PF01131 DNA topoisomerase JG540_09290 PF01751 Toprim domain JG540_09290 PF13368 Topoisomerase C-terminal repeat JG540_09310 PF05175 Methyltransferase small domain JG540_09325 PF00437 Type II/IV secretion system protein JG540_09355 PF00561 alpha/beta hydrolase fold JG540_09360 PF00633 Helix-hairpin-helix motif JG540_09360 PF00730 HhH-GPD superfamily base excision DNA repair protein JG540_09360 PF10576 Iron-sulfur binding domain of endonuclease III JG540_09365 PF13545 Crp-like helix-turn-helix domain JG540_09365 PF00027 Cyclic nucleotide-binding domain JG540_09375 PF02467 Transcription factor WhiB JG540_09380 PF17092 Penicillin-binding protein OB-like domain JG540_09380 PF00912 Transglycosylase JG540_09380 PF00905 Penicillin binding protein transpeptidase domain JG540_09385 PF00149 Calcineurin-like phosphoesterase JG540_09395 PF00781 Diacylglycerol kinase catalytic domain JG540_09400 PF08353 Domain of unknown function (DUF1727) JG540_09400 PF08245 Mur ligase middle domain JG540_09405 PF07685 CobB/CobQ-like glutamine amidotransferase domain JG540_09415 PF00762 Ferrochelatase JG540_09415 PF06778 Chlorite dismutase JG540_09420 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JG540_09420 PF01488 Shikimate / quinate 5-dehydrogenase JG540_09420 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JG540_09425 PF01208 Uroporphyrinogen decarboxylase (URO-D) JG540_09430 PF04324 BFD-like [2Fe-2S] binding domain JG540_09430 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_09445 PF00490 Delta-aminolevulinic acid dehydratase JG540_09450 PF00202 Aminotransferase class-III JG540_09455 PF13520 Amino acid permease JG540_09460 PF01297 Zinc-uptake complex component A periplasmic JG540_09465 PF00005 ABC transporter JG540_09470 PF00950 ABC 3 transport family JG540_09475 PF00950 ABC 3 transport family JG540_09485 PF00085 Thioredoxin JG540_09490 PF01118 Semialdehyde dehydrogenase, NAD binding domain JG540_09490 PF02774 Semialdehyde dehydrogenase, dimerisation domain JG540_09495 PF13840 ACT domain JG540_09495 PF01842 ACT domain JG540_09495 PF00696 Amino acid kinase family JG540_09505 PF13732 Domain of unknown function (DUF4162) JG540_09505 PF00005 ABC transporter JG540_09515 PF13662 Toprim domain JG540_09515 PF02132 RecR protein JG540_09535 PF01522 Polysaccharide deacetylase JG540_09555 PF00860 Permease family JG540_09570 PF02146 Sir2 family JG540_09605 PF01171 PP-loop family JG540_09605 PF11734 TilS substrate C-terminal domain JG540_09605 PF14437 MafB19-like deaminase JG540_09610 PF02028 BCCT, betaine/carnitine/choline family transporter JG540_09620 PF11852 Domain of unknown function (DUF3372) JG540_09620 PF03714 Bacterial pullanase-associated domain JG540_09620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JG540_09620 PF18494 Pullulanase Ins domain JG540_09620 PF17967 Pullulanase N2 domain JG540_09625 PF03714 Bacterial pullanase-associated domain JG540_09625 PF18494 Pullulanase Ins domain JG540_09625 PF11852 Domain of unknown function (DUF3372) JG540_09625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JG540_09625 PF17967 Pullulanase N2 domain JG540_09630 PF03714 Bacterial pullanase-associated domain JG540_09630 PF02806 Alpha amylase, C-terminal all-beta domain JG540_09630 PF00128 Alpha amylase, catalytic domain JG540_09635 PF00664 ABC transporter transmembrane region JG540_09635 PF00005 ABC transporter JG540_09640 PF00664 ABC transporter transmembrane region JG540_09640 PF00005 ABC transporter JG540_09660 PF00939 Sodium:sulfate symporter transmembrane region JG540_09680 PF00728 Glycosyl hydrolase family 20, catalytic domain JG540_09680 PF02838 Glycosyl hydrolase family 20, domain 2 JG540_09685 PF00528 Binding-protein-dependent transport system inner membrane component JG540_09690 PF00528 Binding-protein-dependent transport system inner membrane component JG540_09710 PF00356 Bacterial regulatory proteins, lacI family JG540_09715 PF01547 Bacterial extracellular solute-binding protein JG540_09720 PF18429 Domain of unknown function (DUF5609) JG540_09725 PF02403 Seryl-tRNA synthetase N-terminal domain JG540_09725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JG540_09730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JG540_09730 PF03466 LysR substrate binding domain JG540_09750 PF04740 LXG domain of WXG superfamily JG540_09750 PF14449 Pre-toxin TG JG540_09750 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues JG540_09765 PF00781 Diacylglycerol kinase catalytic domain JG540_09770 PF07690 Major Facilitator Superfamily JG540_09775 PF00800 Prephenate dehydratase JG540_09775 PF01842 ACT domain JG540_09800 PF00145 C-5 cytosine-specific DNA methylase JG540_09805 PF03852 DNA mismatch endonuclease Vsr JG540_09830 PF01042 Endoribonuclease L-PSP JG540_09840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JG540_09840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JG540_09840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JG540_09840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JG540_09845 PF14256 YwiC-like protein JG540_09850 PF00155 Aminotransferase class I and II JG540_09855 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV JG540_09875 PF03848 Tellurite resistance protein TehB JG540_09880 PF03051 Peptidase C1-like family JG540_09885 PF00206 Lyase JG540_09885 PF08328 Adenylosuccinate lyase C-terminal JG540_09895 PF00356 Bacterial regulatory proteins, lacI family JG540_09915 PF00528 Binding-protein-dependent transport system inner membrane component JG540_09920 PF00528 Binding-protein-dependent transport system inner membrane component JG540_09925 PF00403 Heavy-metal-associated domain JG540_09925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JG540_09925 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_09930 PF00403 Heavy-metal-associated domain JG540_10000 PF00005 ABC transporter JG540_10015 PF08241 Methyltransferase domain JG540_10020 PF00202 Aminotransferase class-III JG540_10020 PF04055 Radical SAM superfamily JG540_10020 PF06968 Biotin and Thiamin Synthesis associated domain JG540_10035 PF00196 Bacterial regulatory proteins, luxR family JG540_10035 PF00072 Response regulator receiver domain JG540_10050 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JG540_10070 PF06965 Na+/H+ antiporter 1 JG540_10070 PF13462 Thioredoxin JG540_10110 PF00149 Calcineurin-like phosphoesterase JG540_10110 PF02872 5'-nucleotidase, C-terminal domain JG540_10120 PF01743 Poly A polymerase head domain JG540_10120 PF12627 Probable RNA and SrmB- binding site of polymerase A JG540_10120 PF13735 tRNA nucleotidyltransferase domain 2 putative JG540_10125 PF00293 NUDIX domain JG540_10135 PF03023 Lipid II flippase MurJ JG540_10140 PF07992 Pyridine nucleotide-disulphide oxidoreductase JG540_10145 PF00085 Thioredoxin JG540_10150 PF00291 Pyridoxal-phosphate dependent enzyme JG540_10150 PF14821 Threonine synthase N terminus JG540_10155 PF00155 Aminotransferase class I and II JG540_10160 PF07478 D-ala D-ala ligase C-terminus JG540_10160 PF01820 D-ala D-ala ligase N-terminus JG540_10165 PF02195 ParB-like nuclease domain JG540_10165 PF17762 HTH domain found in ParB protein JG540_10170 PF13614 AAA domain JG540_10175 PF02527 rRNA small subunit methyltransferase G JG540_10185 PF02096 60Kd inner membrane protein JG540_10190 PF01809 Putative membrane protein insertion efficiency factor JG540_10195 PF00825 Ribonuclease P JG540_10200 PF00468 Ribosomal protein L34