locus-tag class description AFR_00005 PF08299 Bacterial dnaA protein helix-turn-helix AFR_00005 PF00308 Bacterial dnaA protein AFR_00010 PF02767 DNA polymerase III beta subunit, central domain AFR_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFR_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFR_00015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_00015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFR_00020 PF02463 RecF/RecN/SMC N terminal domain AFR_00025 PF05258 Dna[CI] antecedent, DciA AFR_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_00040 PF00986 DNA gyrase B subunit, carboxyl terminus AFR_00040 PF01751 Toprim domain AFR_00040 PF00204 DNA gyrase B AFR_00045 PF03989 DNA gyrase C-terminal domain, beta-propeller AFR_00045 PF00521 DNA gyrase/topoisomerase IV, subunit A AFR_00050 PF12089 Transmembrane domain of unknown function (DUF3566) AFR_00075 PF00293 NUDIX domain AFR_00075 PF09297 NADH pyrophosphatase zinc ribbon domain AFR_00090 PF00583 Acetyltransferase (GNAT) family AFR_00095 PF01323 DSBA-like thioredoxin domain AFR_00100 PF02657 Fe-S metabolism associated domain AFR_00110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_00110 PF03129 Anticodon binding domain AFR_00110 PF04073 Aminoacyl-tRNA editing domain AFR_00120 PF00581 Rhodanese-like domain AFR_00125 PF08281 Sigma-70, region 4 AFR_00125 PF04542 Sigma-70 region 2 AFR_00135 PF00005 ABC transporter AFR_00155 PF00183 Hsp90 protein AFR_00155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_00170 PF00289 Biotin carboxylase, N-terminal domain AFR_00170 PF02785 Biotin carboxylase C-terminal domain AFR_00170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_00175 PF00682 HMGL-like AFR_00185 PF03777 ChpA-C AFR_00190 PF01039 Carboxyl transferase domain AFR_00195 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_00195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_00195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_00200 PF00196 Bacterial regulatory proteins, luxR family AFR_00205 PF01047 MarR family AFR_00210 PF04264 YceI-like domain AFR_00255 PF03808 Glycosyl transferase WecB/TagA/CpsF family AFR_00260 PF16363 GDP-mannose 4,6 dehydratase AFR_00265 PF00498 FHA domain AFR_00265 PF12401 Protein of unknown function (DUF2662) AFR_00265 PF12401 Protein of unknown function (DUF2662) AFR_00265 PF00498 FHA domain AFR_00270 PF16697 Inner membrane component of T3SS, cytoplasmic domain AFR_00280 PF01098 Cell cycle protein AFR_00285 PF00905 Penicillin binding protein transpeptidase domain AFR_00290 PF00069 Protein kinase domain AFR_00295 PF03793 PASTA domain AFR_00295 PF00069 Protein kinase domain AFR_00300 PF00117 Glutamine amidotransferase class-I AFR_00320 PF06781 Cell division protein CrgA AFR_00325 PF13183 4Fe-4S dicluster domain AFR_00325 PF02754 Cysteine-rich domain AFR_00335 PF01595 Cyclin M transmembrane N-terminal domain AFR_00335 PF00571 CBS domain AFR_00335 PF03471 Transporter associated domain AFR_00340 PF01595 Cyclin M transmembrane N-terminal domain AFR_00340 PF00571 CBS domain AFR_00350 PF04542 Sigma-70 region 2 AFR_00350 PF08281 Sigma-70, region 4 AFR_00365 PF00293 NUDIX domain AFR_00385 PF00692 dUTPase AFR_00415 PF00156 Phosphoribosyl transferase domain AFR_00430 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_00430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_00430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_00430 PF12806 Acetyl-CoA dehydrogenase C-terminal like AFR_00445 PF05368 NmrA-like family AFR_00460 PF03006 Haemolysin-III related AFR_00465 PF02683 Cytochrome C biogenesis protein transmembrane region AFR_00465 PF00578 AhpC/TSA family AFR_00465 PF17991 Thioredoxin like C-terminal domain AFR_00480 PF00364 Biotin-requiring enzyme AFR_00480 PF02817 e3 binding domain AFR_00480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFR_00485 PF02779 Transketolase, pyrimidine binding domain AFR_00485 PF02780 Transketolase, C-terminal domain AFR_00490 PF00676 Dehydrogenase E1 component AFR_00520 PF00012 Hsp70 protein AFR_00525 PF01025 GrpE AFR_00530 PF00684 DnaJ central domain AFR_00530 PF01556 DnaJ C terminal domain AFR_00530 PF00226 DnaJ domain AFR_00535 PF13411 MerR HTH family regulatory protein AFR_00545 PF02254 TrkA-N domain AFR_00545 PF00999 Sodium/hydrogen exchanger family AFR_00555 PF07690 Major Facilitator Superfamily AFR_00565 PF00004 ATPase family associated with various cellular activities (AAA) AFR_00565 PF17871 AAA lid domain AFR_00565 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_00565 PF07724 AAA domain (Cdc48 subfamily) AFR_00565 PF02861 Clp amino terminal domain, pathogenicity island component AFR_00590 PF01022 Bacterial regulatory protein, arsR family AFR_00600 PF09335 SNARE associated Golgi protein AFR_00605 PF00149 Calcineurin-like phosphoesterase AFR_00615 PF04542 Sigma-70 region 2 AFR_00615 PF08281 Sigma-70, region 4 AFR_00630 PF01116 Fructose-bisphosphate aldolase class-II AFR_00680 PF00709 Adenylosuccinate synthetase AFR_00685 PF02844 Phosphoribosylglycinamide synthetase, N domain AFR_00685 PF02843 Phosphoribosylglycinamide synthetase, C domain AFR_00685 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFR_00705 PF00206 Lyase AFR_00705 PF10397 Adenylosuccinate lyase C-terminus AFR_00715 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AFR_00725 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFR_00725 PF02769 AIR synthase related protein, C-terminal domain AFR_00725 PF00586 AIR synthase related protein, N-terminal domain AFR_00740 PF00156 Phosphoribosyl transferase domain AFR_00745 PF00586 AIR synthase related protein, N-terminal domain AFR_00745 PF02769 AIR synthase related protein, C-terminal domain AFR_00750 PF04055 Radical SAM superfamily AFR_00765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFR_00765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFR_00790 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AFR_00810 PF03061 Thioesterase superfamily AFR_00835 PF01740 STAS domain AFR_00850 PF04542 Sigma-70 region 2 AFR_00850 PF08281 Sigma-70, region 4 AFR_00855 PF03795 YCII-related domain AFR_00880 PF00293 NUDIX domain AFR_00885 PF01593 Flavin containing amine oxidoreductase AFR_00900 PF03441 FAD binding domain of DNA photolyase AFR_00900 PF00875 DNA photolyase AFR_00915 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_00915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_00940 PF01565 FAD binding domain AFR_00940 PF02913 FAD linked oxidases, C-terminal domain AFR_00945 PF12697 Alpha/beta hydrolase family AFR_00955 PF13439 Glycosyltransferase Family 4 AFR_00955 PF00534 Glycosyl transferases group 1 AFR_00960 PF00534 Glycosyl transferases group 1 AFR_00960 PF13579 Glycosyl transferase 4-like domain AFR_00975 PF03631 Virulence factor BrkB AFR_01030 PF00440 Bacterial regulatory proteins, tetR family AFR_01035 PF08281 Sigma-70, region 4 AFR_01035 PF04542 Sigma-70 region 2 AFR_01045 PF13443 Cro/C1-type HTH DNA-binding domain AFR_01070 PF03466 LysR substrate binding domain AFR_01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_01080 PF00248 Aldo/keto reductase family AFR_01100 PF00512 His Kinase A (phospho-acceptor) domain AFR_01100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_01100 PF00672 HAMP domain AFR_01105 PF00072 Response regulator receiver domain AFR_01105 PF00486 Transcriptional regulatory protein, C terminal AFR_01120 PF02687 FtsX-like permease family AFR_01120 PF12704 MacB-like periplasmic core domain AFR_01120 PF00005 ABC transporter AFR_01125 PF00005 ABC transporter AFR_01125 PF12704 MacB-like periplasmic core domain AFR_01125 PF02687 FtsX-like permease family AFR_01135 PF17200 Single Cache domain 2 AFR_01135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_01135 PF00672 HAMP domain AFR_01140 PF07497 Rho termination factor, RNA-binding domain AFR_01140 PF07498 Rho termination factor, N-terminal domain AFR_01140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_01150 PF00561 alpha/beta hydrolase fold AFR_01160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_01160 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_01170 PF00440 Bacterial regulatory proteins, tetR family AFR_01200 PF01741 Large-conductance mechanosensitive channel, MscL AFR_01210 PF01740 STAS domain AFR_01210 PF08678 Rsbr N terminal AFR_01215 PF01740 STAS domain AFR_01220 PF13581 Histidine kinase-like ATPase domain AFR_01230 PF00672 HAMP domain AFR_01230 PF00072 Response regulator receiver domain AFR_01230 PF01627 Hpt domain AFR_01230 PF00512 His Kinase A (phospho-acceptor) domain AFR_01230 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AFR_01230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_01235 PF00072 Response regulator receiver domain AFR_01235 PF00486 Transcriptional regulatory protein, C terminal AFR_01245 PF00005 ABC transporter AFR_01255 PF00326 Prolyl oligopeptidase family AFR_01255 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFR_01265 PF01872 RibD C-terminal domain AFR_01265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFR_01270 PF01872 RibD C-terminal domain AFR_01275 PF13439 Glycosyltransferase Family 4 AFR_01275 PF00534 Glycosyl transferases group 1 AFR_01280 PF13439 Glycosyltransferase Family 4 AFR_01280 PF00534 Glycosyl transferases group 1 AFR_01285 PF00535 Glycosyl transferase family 2 AFR_01295 PF09308 LuxQ, periplasmic AFR_01295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_01295 PF00512 His Kinase A (phospho-acceptor) domain AFR_01295 PF00072 Response regulator receiver domain AFR_01300 PF00072 Response regulator receiver domain AFR_01315 PF01740 STAS domain AFR_01320 PF00202 Aminotransferase class-III AFR_01325 PF00300 Histidine phosphatase superfamily (branch 1) AFR_01330 PF00578 AhpC/TSA family AFR_01335 PF02683 Cytochrome C biogenesis protein transmembrane region AFR_01345 PF01578 Cytochrome C assembly protein AFR_01350 PF00005 ABC transporter AFR_01350 PF00664 ABC transporter transmembrane region AFR_01355 PF00005 ABC transporter AFR_01355 PF00664 ABC transporter transmembrane region AFR_01365 PF00356 Bacterial regulatory proteins, lacI family AFR_01370 PF13416 Bacterial extracellular solute-binding protein AFR_01375 PF13199 Glycosyl hydrolase family 66 AFR_01375 PF16990 Carbohydrate binding module (family 35) AFR_01375 PF03422 Carbohydrate binding module (family 6) AFR_01380 PF00128 Alpha amylase, catalytic domain AFR_01385 PF00356 Bacterial regulatory proteins, lacI family AFR_01400 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AFR_01405 PF01040 UbiA prenyltransferase family AFR_01410 PF04542 Sigma-70 region 2 AFR_01410 PF08281 Sigma-70, region 4 AFR_01420 PF02441 Flavoprotein AFR_01430 PF13404 AsnC-type helix-turn-helix domain AFR_01430 PF01037 Lrp/AsnC ligand binding domain AFR_01435 PF00291 Pyridoxal-phosphate dependent enzyme AFR_01450 PF00271 Helicase conserved C-terminal domain AFR_01450 PF00270 DEAD/DEAH box helicase AFR_01465 PF00877 NlpC/P60 family AFR_01470 PF04055 Radical SAM superfamily AFR_01485 PF00246 Zinc carboxypeptidase AFR_01520 PF01032 FecCD transport family AFR_01525 PF00005 ABC transporter AFR_01540 PF00005 ABC transporter AFR_01560 PF13538 UvrD-like helicase C-terminal domain AFR_01570 PF07690 Major Facilitator Superfamily AFR_01575 PF02621 Menaquinone biosynthesis AFR_01585 PF00535 Glycosyl transferase family 2 AFR_01595 PF01070 FMN-dependent dehydrogenase AFR_01600 PF00248 Aldo/keto reductase family AFR_01605 PF16483 Beta-1,3-glucanase AFR_01605 PF00652 Ricin-type beta-trefoil lectin domain AFR_01610 PF04434 SWIM zinc finger AFR_01615 PF00271 Helicase conserved C-terminal domain AFR_01615 PF00176 SNF2 family N-terminal domain AFR_01615 PF12419 SNF2 Helicase protein AFR_01630 PF04055 Radical SAM superfamily AFR_01640 PF01209 ubiE/COQ5 methyltransferase family AFR_01650 PF01494 FAD binding domain AFR_01655 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFR_01660 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFR_01665 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFR_01670 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFR_01680 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_01680 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFR_01680 PF10531 SLBB domain AFR_01685 PF01568 Molydopterin dinucleotide binding domain AFR_01685 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFR_01685 PF00384 Molybdopterin oxidoreductase AFR_01690 PF00146 NADH dehydrogenase AFR_01695 PF12838 4Fe-4S dicluster domain AFR_01700 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFR_01705 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFR_01710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFR_01710 PF00361 Proton-conducting membrane transporter AFR_01715 PF00361 Proton-conducting membrane transporter AFR_01720 PF00361 Proton-conducting membrane transporter AFR_01725 PF00348 Polyprenyl synthetase AFR_01740 PF04545 Sigma-70, region 4 AFR_01740 PF04542 Sigma-70 region 2 AFR_01745 PF13490 Putative zinc-finger AFR_01750 PF00892 EamA-like transporter family AFR_01760 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AFR_01770 PF06013 Proteins of 100 residues with WXG AFR_01790 PF00561 alpha/beta hydrolase fold AFR_01800 PF00801 PKD domain AFR_01800 PF05547 Immune inhibitor A peptidase M6 AFR_01810 PF05547 Immune inhibitor A peptidase M6 AFR_01810 PF00801 PKD domain AFR_01815 PF13193 AMP-binding enzyme C-terminal domain AFR_01815 PF16177 Acetyl-coenzyme A synthetase N-terminus AFR_01815 PF00501 AMP-binding enzyme AFR_01835 PF13466 STAS domain AFR_01845 PF00437 Type II/IV secretion system protein AFR_01875 PF00271 Helicase conserved C-terminal domain AFR_01875 PF00270 DEAD/DEAH box helicase AFR_01875 PF09369 Domain of unknown function (DUF1998) AFR_01880 PF01740 STAS domain AFR_01890 PF03030 Inorganic H+ pyrophosphatase AFR_01905 PF01131 DNA topoisomerase AFR_01905 PF01751 Toprim domain AFR_01905 PF13368 Topoisomerase C-terminal repeat AFR_01910 PF01565 FAD binding domain AFR_01910 PF04030 D-arabinono-1,4-lactone oxidase AFR_01915 PF17925 Tetracyclin repressor-like, C-terminal domain AFR_01915 PF00440 Bacterial regulatory proteins, tetR family AFR_01925 PF02223 Thymidylate kinase AFR_01930 PF12169 DNA polymerase III subunits gamma and tau domain III AFR_01955 PF04468 PSP1 C-terminal conserved region AFR_01960 PF00239 Resolvase, N terminal domain AFR_01960 PF02796 Helix-turn-helix domain of resolvase AFR_01980 PF00672 HAMP domain AFR_01980 PF12729 Four helix bundle sensory module for signal transduction AFR_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_01985 PF07690 Major Facilitator Superfamily AFR_01990 PF00440 Bacterial regulatory proteins, tetR family AFR_01995 PF14602 Hexapeptide repeat of succinyl-transferase AFR_01995 PF12464 Maltose acetyltransferase AFR_02000 PF01494 FAD binding domain AFR_02045 PF01965 DJ-1/PfpI family AFR_02050 PF00293 NUDIX domain AFR_02055 PF02735 Ku70/Ku80 beta-barrel domain AFR_02060 PF01068 ATP dependent DNA ligase domain AFR_02060 PF13298 DNA polymerase Ligase (LigD) AFR_02060 PF04679 ATP dependent DNA ligase C terminal region AFR_02065 PF01068 ATP dependent DNA ligase domain AFR_02065 PF13298 DNA polymerase Ligase (LigD) AFR_02065 PF04679 ATP dependent DNA ligase C terminal region AFR_02080 PF04851 Type III restriction enzyme, res subunit AFR_02080 PF00271 Helicase conserved C-terminal domain AFR_02095 PF13419 Haloacid dehalogenase-like hydrolase AFR_02100 PF00313 'Cold-shock' DNA-binding domain AFR_02105 PF02621 Menaquinone biosynthesis AFR_02110 PF01048 Phosphorylase superfamily AFR_02115 PF07690 Major Facilitator Superfamily AFR_02120 PF11228 Protein of unknown function (DUF3027) AFR_02130 PF00860 Permease family AFR_02135 PF01047 MarR family AFR_02140 PF05977 Transmembrane secretion effector AFR_02145 PF00585 C-terminal regulatory domain of Threonine dehydratase AFR_02145 PF00291 Pyridoxal-phosphate dependent enzyme AFR_02150 PF07729 FCD domain AFR_02150 PF00392 Bacterial regulatory proteins, gntR family AFR_02155 PF07690 Major Facilitator Superfamily AFR_02165 PF02834 LigT like Phosphoesterase AFR_02190 PF00155 Aminotransferase class I and II AFR_02195 PF00266 Aminotransferase class-V AFR_02200 PF00285 Citrate synthase, C-terminal domain AFR_02205 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_02205 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AFR_02210 PF07690 Major Facilitator Superfamily AFR_02215 PF01263 Aldose 1-epimerase AFR_02230 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_02230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_02230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_02250 PF00535 Glycosyl transferase family 2 AFR_02250 PF01501 Glycosyl transferase family 8 AFR_02255 PF17912 MalK OB fold domain AFR_02255 PF00005 ABC transporter AFR_02265 PF13419 Haloacid dehalogenase-like hydrolase AFR_02270 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFR_02270 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFR_02270 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFR_02285 PF00005 ABC transporter AFR_02285 PF01476 LysM domain AFR_02295 PF00440 Bacterial regulatory proteins, tetR family AFR_02295 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_02300 PF00990 Diguanylate cyclase, GGDEF domain AFR_02300 PF00563 EAL domain AFR_02300 PF03707 Bacterial signalling protein N terminal repeat AFR_02330 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_02340 PF17158 Membrane-associated sensor, integral membrane domain AFR_02340 PF00990 Diguanylate cyclase, GGDEF domain AFR_02380 PF00440 Bacterial regulatory proteins, tetR family AFR_02380 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_02395 PF03793 PASTA domain AFR_02395 PF00069 Protein kinase domain AFR_02400 PF17102 Stealth protein CR3, conserved region 3 AFR_02400 PF17103 Stealth protein CR4, conserved region 4 AFR_02400 PF11380 Stealth protein CR2, conserved region 2 AFR_02400 PF17101 Stealth protein CR1, conserved region 1 AFR_02400 PF00534 Glycosyl transferases group 1 AFR_02410 PF04542 Sigma-70 region 2 AFR_02410 PF04545 Sigma-70, region 4 AFR_02420 PF04542 Sigma-70 region 2 AFR_02420 PF08281 Sigma-70, region 4 AFR_02435 PF02653 Branched-chain amino acid transport system / permease component AFR_02440 PF02653 Branched-chain amino acid transport system / permease component AFR_02445 PF00005 ABC transporter AFR_02455 PF13407 Periplasmic binding protein domain AFR_02485 PF08240 Alcohol dehydrogenase GroES-like domain AFR_02485 PF08990 Erythronolide synthase docking AFR_02485 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_02485 PF09277 Erythronolide synthase, docking AFR_02485 PF16197 Ketoacyl-synthetase C-terminal extension AFR_02485 PF00550 Phosphopantetheine attachment site AFR_02485 PF00698 Acyl transferase domain AFR_02485 PF14765 Polyketide synthase dehydratase AFR_02485 PF08659 KR domain AFR_02485 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_02545 PF01580 FtsK/SpoIIIE family AFR_02565 PF00004 ATPase family associated with various cellular activities (AAA) AFR_02565 PF17866 AAA lid domain AFR_02570 PF02575 YbaB/EbfC DNA-binding family AFR_02575 PF03704 Bacterial transcriptional activator domain AFR_02575 PF00931 NB-ARC domain AFR_02575 PF00486 Transcriptional regulatory protein, C terminal AFR_02580 PF00486 Transcriptional regulatory protein, C terminal AFR_02580 PF03704 Bacterial transcriptional activator domain AFR_02580 PF00931 NB-ARC domain AFR_02590 PF00196 Bacterial regulatory proteins, luxR family AFR_02590 PF00072 Response regulator receiver domain AFR_02615 PF00440 Bacterial regulatory proteins, tetR family AFR_02625 PF07690 Major Facilitator Superfamily AFR_02635 PF00486 Transcriptional regulatory protein, C terminal AFR_02635 PF00072 Response regulator receiver domain AFR_02655 PF13185 GAF domain AFR_02655 PF00990 Diguanylate cyclase, GGDEF domain AFR_02655 PF00563 EAL domain AFR_02670 PF02348 Cytidylyltransferase AFR_02685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFR_02690 PF02719 Polysaccharide biosynthesis protein AFR_02705 PF00501 AMP-binding enzyme AFR_02705 PF13193 AMP-binding enzyme C-terminal domain AFR_02720 PF00535 Glycosyl transferase family 2 AFR_02770 PF00072 Response regulator receiver domain AFR_02770 PF00196 Bacterial regulatory proteins, luxR family AFR_02780 PF03176 MMPL family AFR_02785 PF05532 CsbD-like AFR_02790 PF00563 EAL domain AFR_02790 PF03707 Bacterial signalling protein N terminal repeat AFR_02790 PF00990 Diguanylate cyclase, GGDEF domain AFR_02795 PF00535 Glycosyl transferase family 2 AFR_02805 PF08666 SAF domain AFR_02805 PF03102 NeuB family AFR_02825 PF01593 Flavin containing amine oxidoreductase AFR_02830 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFR_02835 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AFR_02855 PF00563 EAL domain AFR_02855 PF00990 Diguanylate cyclase, GGDEF domain AFR_02855 PF03707 Bacterial signalling protein N terminal repeat AFR_02870 PF00528 Binding-protein-dependent transport system inner membrane component AFR_02875 PF00528 Binding-protein-dependent transport system inner membrane component AFR_02880 PF16912 Glucose dehydrogenase C-terminus AFR_02880 PF08240 Alcohol dehydrogenase GroES-like domain AFR_02915 PF00561 alpha/beta hydrolase fold AFR_02920 PF01513 ATP-NAD kinase AFR_02925 PF01169 Uncharacterized protein family UPF0016 AFR_02955 PF08281 Sigma-70, region 4 AFR_02955 PF12680 SnoaL-like domain AFR_02955 PF04542 Sigma-70 region 2 AFR_02960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFR_02960 PF02378 Phosphotransferase system, EIIC AFR_02965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFR_02965 PF02378 Phosphotransferase system, EIIC AFR_02975 PF05524 PEP-utilising enzyme, N-terminal AFR_02975 PF00381 PTS HPr component phosphorylation site AFR_02975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFR_02975 PF00391 PEP-utilising enzyme, mobile domain AFR_02975 PF02896 PEP-utilising enzyme, TIM barrel domain AFR_02985 PF02896 PEP-utilising enzyme, TIM barrel domain AFR_02985 PF00391 PEP-utilising enzyme, mobile domain AFR_02985 PF05524 PEP-utilising enzyme, N-terminal AFR_02995 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFR_02995 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_03000 PF07690 Major Facilitator Superfamily AFR_03010 PF00041 Fibronectin type III domain AFR_03010 PF00704 Glycosyl hydrolases family 18 AFR_03010 PF00553 Cellulose binding domain AFR_03040 PF00196 Bacterial regulatory proteins, luxR family AFR_03045 PF01061 ABC-2 type transporter AFR_03050 PF13732 Domain of unknown function (DUF4162) AFR_03050 PF00005 ABC transporter AFR_03055 PF00106 short chain dehydrogenase AFR_03060 PF00743 Flavin-binding monooxygenase-like AFR_03065 PF04261 Dyp-type peroxidase family AFR_03075 PF09335 SNARE associated Golgi protein AFR_03080 PF17678 Glycosyl hydrolase family 92 N-terminal domain AFR_03080 PF07971 Glycosyl hydrolase family 92 AFR_03085 PF01068 ATP dependent DNA ligase domain AFR_03085 PF04679 ATP dependent DNA ligase C terminal region AFR_03085 PF13298 DNA polymerase Ligase (LigD) AFR_03100 PF16657 Maltogenic Amylase, C-terminal domain AFR_03100 PF02903 Alpha amylase, N-terminal ig-like domain AFR_03100 PF00128 Alpha amylase, catalytic domain AFR_03105 PF04539 Sigma-70 region 3 AFR_03105 PF04545 Sigma-70, region 4 AFR_03105 PF04542 Sigma-70 region 2 AFR_03120 PF08240 Alcohol dehydrogenase GroES-like domain AFR_03120 PF00107 Zinc-binding dehydrogenase AFR_03120 PF13823 Alcohol dehydrogenase GroES-associated AFR_03125 PF00106 short chain dehydrogenase AFR_03135 PF00248 Aldo/keto reductase family AFR_03150 PF00398 Ribosomal RNA adenine dimethylase AFR_03170 PF08241 Methyltransferase domain AFR_03175 PF00999 Sodium/hydrogen exchanger family AFR_03180 PF04198 Putative sugar-binding domain AFR_03185 PF00106 short chain dehydrogenase AFR_03190 PF00464 Serine hydroxymethyltransferase AFR_03210 PF00356 Bacterial regulatory proteins, lacI family AFR_03215 PF13407 Periplasmic binding protein domain AFR_03220 PF02653 Branched-chain amino acid transport system / permease component AFR_03225 PF00005 ABC transporter AFR_03245 PF05336 L-rhamnose mutarotase AFR_03255 PF02653 Branched-chain amino acid transport system / permease component AFR_03260 PF02653 Branched-chain amino acid transport system / permease component AFR_03265 PF00005 ABC transporter AFR_03270 PF00356 Bacterial regulatory proteins, lacI family AFR_03275 PF00596 Class II Aldolase and Adducin N-terminal domain AFR_03280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_03280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_03285 PF02754 Cysteine-rich domain AFR_03290 PF02589 LUD domain AFR_03290 PF11870 Domain of unknown function (DUF3390) AFR_03290 PF13183 4Fe-4S dicluster domain AFR_03295 PF02589 LUD domain AFR_03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_03310 PF13493 Domain of unknown function (DUF4118) AFR_03310 PF00512 His Kinase A (phospho-acceptor) domain AFR_03310 PF00582 Universal stress protein family AFR_03310 PF02702 Osmosensitive K+ channel His kinase sensor domain AFR_03315 PF17933 Tetracyclin repressor-like, C-terminal domain AFR_03315 PF00440 Bacterial regulatory proteins, tetR family AFR_03320 PF00005 ABC transporter AFR_03320 PF13732 Domain of unknown function (DUF4162) AFR_03330 PF00999 Sodium/hydrogen exchanger family AFR_03335 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFR_03335 PF05221 S-adenosyl-L-homocysteine hydrolase AFR_03345 PF00356 Bacterial regulatory proteins, lacI family AFR_03350 PF03795 YCII-related domain AFR_03355 PF04542 Sigma-70 region 2 AFR_03355 PF08281 Sigma-70, region 4 AFR_03365 PF01261 Xylose isomerase-like TIM barrel AFR_03370 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_03370 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_03380 PF01435 Peptidase family M48 AFR_03385 PF01327 Polypeptide deformylase AFR_03395 PF00067 Cytochrome P450 AFR_03415 PF06965 Na+/H+ antiporter 1 AFR_03425 PF00005 ABC transporter AFR_03430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_03430 PF05384 Sensor protein DegS AFR_03430 PF07730 Histidine kinase AFR_03435 PF00196 Bacterial regulatory proteins, luxR family AFR_03435 PF00072 Response regulator receiver domain AFR_03455 PF16591 Helical bimodular sensor domain AFR_03455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_03455 PF00672 HAMP domain AFR_03465 PF08264 Anticodon-binding domain of tRNA AFR_03465 PF00133 tRNA synthetases class I (I, L, M and V) AFR_03470 PF01300 Telomere recombination AFR_03480 PF01047 MarR family AFR_03490 PF00563 EAL domain AFR_03490 PF00990 Diguanylate cyclase, GGDEF domain AFR_03490 PF03707 Bacterial signalling protein N terminal repeat AFR_03495 PF03358 NADPH-dependent FMN reductase AFR_03505 PF01565 FAD binding domain AFR_03505 PF08031 Berberine and berberine like AFR_03510 PF00296 Luciferase-like monooxygenase AFR_03520 PF00196 Bacterial regulatory proteins, luxR family AFR_03520 PF00072 Response regulator receiver domain AFR_03525 PF08240 Alcohol dehydrogenase GroES-like domain AFR_03525 PF00107 Zinc-binding dehydrogenase AFR_03560 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_03560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_03635 PF06969 HemN C-terminal domain AFR_03635 PF04055 Radical SAM superfamily AFR_03645 PF01625 Peptide methionine sulfoxide reductase AFR_03650 PF12680 SnoaL-like domain AFR_03650 PF08281 Sigma-70, region 4 AFR_03650 PF04542 Sigma-70 region 2 AFR_03660 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AFR_03725 PF00440 Bacterial regulatory proteins, tetR family AFR_03725 PF08361 MAATS-type transcriptional repressor, C-terminal region AFR_03735 PF12833 Helix-turn-helix domain AFR_03735 PF12852 Cupin AFR_03740 PF01370 NAD dependent epimerase/dehydratase family AFR_03745 PF00005 ABC transporter AFR_03745 PF00664 ABC transporter transmembrane region AFR_03750 PF00005 ABC transporter AFR_03750 PF00664 ABC transporter transmembrane region AFR_03760 PF01042 Endoribonuclease L-PSP AFR_03780 PF00196 Bacterial regulatory proteins, luxR family AFR_03800 PF00589 Phage integrase family AFR_03800 PF02899 Phage integrase, N-terminal SAM-like domain AFR_03810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_03810 PF03466 LysR substrate binding domain AFR_03830 PF00072 Response regulator receiver domain AFR_03830 PF00196 Bacterial regulatory proteins, luxR family AFR_03865 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_03875 PF02515 CoA-transferase family III AFR_03880 PF01979 Amidohydrolase family AFR_03885 PF09339 IclR helix-turn-helix domain AFR_03885 PF01614 Bacterial transcriptional regulator AFR_03900 PF03551 Transcriptional regulator PadR-like family AFR_03900 PF13847 Methyltransferase domain AFR_03905 PF13382 Adenine deaminase C-terminal domain AFR_03905 PF01979 Amidohydrolase family AFR_03925 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AFR_03930 PF00793 DAHP synthetase I family AFR_03940 PF00672 HAMP domain AFR_03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_03940 PF00512 His Kinase A (phospho-acceptor) domain AFR_03945 PF00072 Response regulator receiver domain AFR_03945 PF00486 Transcriptional regulatory protein, C terminal AFR_03970 PF00488 MutS domain V AFR_03970 PF01713 Smr domain AFR_03985 PF00072 Response regulator receiver domain AFR_03985 PF00486 Transcriptional regulatory protein, C terminal AFR_03990 PF08446 PAS fold AFR_03990 PF01590 GAF domain AFR_03990 PF00360 Phytochrome region AFR_03990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_03990 PF00512 His Kinase A (phospho-acceptor) domain AFR_03995 PF00072 Response regulator receiver domain AFR_04000 PF00459 Inositol monophosphatase family AFR_04025 PF00069 Protein kinase domain AFR_04025 PF03793 PASTA domain AFR_04030 PF02254 TrkA-N domain AFR_04030 PF02080 TrkA-C domain AFR_04035 PF02386 Cation transport protein AFR_04040 PF07690 Major Facilitator Superfamily AFR_04065 PF00270 DEAD/DEAH box helicase AFR_04065 PF00271 Helicase conserved C-terminal domain AFR_04065 PF09382 RQC domain AFR_04065 PF00570 HRDC domain AFR_04065 PF16124 RecQ zinc-binding AFR_04070 PF01476 LysM domain AFR_04070 PF00877 NlpC/P60 family AFR_04070 PF08239 Bacterial SH3 domain AFR_04075 PF02583 Metal-sensitive transcriptional repressor AFR_04095 PF01126 Heme oxygenase AFR_04105 PF00270 DEAD/DEAH box helicase AFR_04105 PF00271 Helicase conserved C-terminal domain AFR_04125 PF00561 alpha/beta hydrolase fold AFR_04145 PF00899 ThiF family AFR_04145 PF00581 Rhodanese-like domain AFR_04155 PF00171 Aldehyde dehydrogenase family AFR_04160 PF00696 Amino acid kinase family AFR_04160 PF01472 PUA domain AFR_04170 PF04072 Leucine carboxyl methyltransferase AFR_04175 PF00440 Bacterial regulatory proteins, tetR family AFR_04175 PF13305 Tetracyclin repressor-like, C-terminal domain AFR_04200 PF04029 2-phosphosulpholactate phosphatase AFR_04205 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFR_04210 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFR_04225 PF08281 Sigma-70, region 4 AFR_04225 PF04542 Sigma-70 region 2 AFR_04230 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFR_04230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFR_04235 PF00146 NADH dehydrogenase AFR_04240 PF00144 Beta-lactamase AFR_04250 PF00037 4Fe-4S binding domain AFR_04255 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFR_04260 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFR_04265 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFR_04265 PF00361 Proton-conducting membrane transporter AFR_04270 PF00361 Proton-conducting membrane transporter AFR_04275 PF00361 Proton-conducting membrane transporter AFR_04280 PF01435 Peptidase family M48 AFR_04315 PF00296 Luciferase-like monooxygenase AFR_04340 PF08281 Sigma-70, region 4 AFR_04340 PF04542 Sigma-70 region 2 AFR_04375 PF07859 alpha/beta hydrolase fold AFR_04380 PF04461 Protein of unknown function (DUF520) AFR_04390 PF00581 Rhodanese-like domain AFR_04400 PF00990 Diguanylate cyclase, GGDEF domain AFR_04400 PF13188 PAS domain AFR_04400 PF00563 EAL domain AFR_04400 PF03707 Bacterial signalling protein N terminal repeat AFR_04405 PF00471 Ribosomal protein L33 AFR_04410 PF13452 N-terminal half of MaoC dehydratase AFR_04420 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFR_04425 PF02357 Transcription termination factor nusG AFR_04430 PF00687 Ribosomal protein L1p/L10e family AFR_04435 PF00005 ABC transporter AFR_04445 PF00466 Ribosomal protein L10 AFR_04455 PF00542 Ribosomal protein L7/L12 C-terminal domain AFR_04455 PF16320 Ribosomal protein L7/L12 dimerisation domain AFR_04460 PF04560 RNA polymerase Rpb2, domain 7 AFR_04460 PF00562 RNA polymerase Rpb2, domain 6 AFR_04460 PF10385 RNA polymerase beta subunit external 1 domain AFR_04460 PF04565 RNA polymerase Rpb2, domain 3 AFR_04460 PF04561 RNA polymerase Rpb2, domain 2 AFR_04460 PF04563 RNA polymerase beta subunit AFR_04465 PF04997 RNA polymerase Rpb1, domain 1 AFR_04465 PF04998 RNA polymerase Rpb1, domain 5 AFR_04465 PF04983 RNA polymerase Rpb1, domain 3 AFR_04465 PF00623 RNA polymerase Rpb1, domain 2 AFR_04465 PF05000 RNA polymerase Rpb1, domain 4 AFR_04480 PF00164 Ribosomal protein S12/S23 AFR_04485 PF00177 Ribosomal protein S7p/S5e AFR_04490 PF00009 Elongation factor Tu GTP binding domain AFR_04490 PF03144 Elongation factor Tu domain 2 AFR_04490 PF03764 Elongation factor G, domain IV AFR_04490 PF14492 Elongation Factor G, domain II AFR_04490 PF00679 Elongation factor G C-terminus AFR_04495 PF00009 Elongation factor Tu GTP binding domain AFR_04495 PF03144 Elongation factor Tu domain 2 AFR_04495 PF03143 Elongation factor Tu C-terminal domain AFR_04500 PF00338 Ribosomal protein S10p/S20e AFR_04505 PF00297 Ribosomal protein L3 AFR_04510 PF00573 Ribosomal protein L4/L1 family AFR_04515 PF00276 Ribosomal protein L23 AFR_04520 PF03947 Ribosomal Proteins L2, C-terminal domain AFR_04520 PF00181 Ribosomal Proteins L2, RNA binding domain AFR_04525 PF00203 Ribosomal protein S19 AFR_04530 PF00237 Ribosomal protein L22p/L17e AFR_04535 PF07650 KH domain AFR_04535 PF00189 Ribosomal protein S3, C-terminal domain AFR_04540 PF00252 Ribosomal protein L16p/L10e AFR_04545 PF00831 Ribosomal L29 protein AFR_04550 PF00366 Ribosomal protein S17 AFR_04555 PF00238 Ribosomal protein L14p/L23e AFR_04560 PF00467 KOW motif AFR_04560 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AFR_04565 PF00673 ribosomal L5P family C-terminus AFR_04565 PF00281 Ribosomal protein L5 AFR_04570 PF00253 Ribosomal protein S14p/S29e AFR_04575 PF00410 Ribosomal protein S8 AFR_04580 PF00347 Ribosomal protein L6 AFR_04585 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AFR_04590 PF03719 Ribosomal protein S5, C-terminal domain AFR_04590 PF00333 Ribosomal protein S5, N-terminal domain AFR_04595 PF00327 Ribosomal protein L30p/L7e AFR_04600 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AFR_04605 PF00344 SecY translocase AFR_04610 PF05191 Adenylate kinase, active site lid AFR_04615 PF00557 Metallopeptidase family M24 AFR_04630 PF01176 Translation initiation factor 1A / IF-1 AFR_04635 PF00444 Ribosomal protein L36 AFR_04640 PF00416 Ribosomal protein S13/S18 AFR_04645 PF00411 Ribosomal protein S11 AFR_04650 PF01479 S4 domain AFR_04650 PF00163 Ribosomal protein S4/S9 N-terminal domain AFR_04655 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFR_04655 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFR_04655 PF01000 RNA polymerase Rpb3/RpoA insert domain AFR_04660 PF01196 Ribosomal protein L17 AFR_04665 PF01416 tRNA pseudouridine synthase AFR_04675 PF05175 Methyltransferase small domain AFR_04675 PF08468 Methyltransferase small domain N-terminal AFR_04680 PF12848 ABC transporter AFR_04680 PF00005 ABC transporter AFR_04690 PF02581 Thiamine monophosphate synthase AFR_04705 PF05690 Thiazole biosynthesis protein ThiG AFR_04710 PF02581 Thiamine monophosphate synthase AFR_04715 PF08543 Phosphomethylpyrimidine kinase AFR_04720 PF13667 ThiC-associated domain AFR_04720 PF01964 Radical SAM ThiC family AFR_04740 PF00005 ABC transporter AFR_04745 PF09084 NMT1/THI5 like AFR_04750 PF00528 Binding-protein-dependent transport system inner membrane component AFR_04765 PF03259 Roadblock/LC7 domain AFR_04785 PF00572 Ribosomal protein L13 AFR_04790 PF00380 Ribosomal protein S9/S16 AFR_04795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFR_04795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFR_04795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFR_04795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFR_04800 PF00155 Aminotransferase class I and II AFR_04810 PF01380 SIS domain AFR_04825 PF01648 4'-phosphopantetheinyl transferase superfamily AFR_04830 PF01256 Carbohydrate kinase AFR_04830 PF03853 YjeF-related protein N-terminus AFR_04835 PF01168 Alanine racemase, N-terminal domain AFR_04835 PF00842 Alanine racemase, C-terminal domain AFR_04840 PF00561 alpha/beta hydrolase fold AFR_04845 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AFR_04850 PF03167 Uracil DNA glycosylase superfamily AFR_04855 PF00583 Acetyltransferase (GNAT) family AFR_04855 PF00814 Glycoprotease family AFR_04865 PF00814 Glycoprotease family AFR_04875 PF00005 ABC transporter AFR_04875 PF00664 ABC transporter transmembrane region AFR_04880 PF00664 ABC transporter transmembrane region AFR_04880 PF00005 ABC transporter AFR_04885 PF00480 ROK family AFR_04890 PF02653 Branched-chain amino acid transport system / permease component AFR_04895 PF00005 ABC transporter AFR_04905 PF04073 Aminoacyl-tRNA editing domain AFR_04910 PF18096 THUMP domain-like AFR_04915 PF00166 Chaperonin 10 Kd subunit AFR_04920 PF00118 TCP-1/cpn60 chaperonin family AFR_04935 PF02467 Transcription factor WhiB AFR_04940 PF00196 Bacterial regulatory proteins, luxR family AFR_04940 PF00072 Response regulator receiver domain AFR_04945 PF17252 Family of unknown function (DUF5319) AFR_04950 PF00478 IMP dehydrogenase / GMP reductase domain AFR_04950 PF00571 CBS domain AFR_04955 PF00478 IMP dehydrogenase / GMP reductase domain AFR_04960 PF11838 ERAP1-like C-terminal domain AFR_04960 PF01433 Peptidase family M1 domain AFR_04970 PF00082 Subtilase family AFR_04975 PF00082 Subtilase family AFR_04980 PF00117 Glutamine amidotransferase class-I AFR_04980 PF00958 GMP synthase C terminal domain AFR_04980 PF02540 NAD synthase AFR_04990 PF00293 NUDIX domain AFR_05000 PF01066 CDP-alcohol phosphatidyltransferase AFR_05005 PF02666 Phosphatidylserine decarboxylase AFR_05025 PF00072 Response regulator receiver domain AFR_05025 PF00196 Bacterial regulatory proteins, luxR family AFR_05030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_05040 PF12911 N-terminal TM domain of oligopeptide transport permease C AFR_05040 PF00528 Binding-protein-dependent transport system inner membrane component AFR_05045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_05045 PF00005 ABC transporter AFR_05050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_05050 PF00005 ABC transporter AFR_05060 PF01817 Chorismate mutase type II AFR_05065 PF00149 Calcineurin-like phosphoesterase AFR_05065 PF00565 Staphylococcal nuclease homologue AFR_05065 PF00746 LPXTG cell wall anchor motif AFR_05065 PF02872 5'-nucleotidase, C-terminal domain AFR_05070 PF13361 UvrD-like helicase C-terminal domain AFR_05070 PF00580 UvrD/REP helicase N-terminal domain AFR_05075 PF01464 Transglycosylase SLT domain AFR_05075 PF01551 Peptidase family M23 AFR_05075 PF10145 Phage-related minor tail protein AFR_05080 PF01551 Peptidase family M23 AFR_05090 PF08442 ATP-grasp domain AFR_05090 PF00549 CoA-ligase AFR_05095 PF02629 CoA binding domain AFR_05095 PF00549 CoA-ligase AFR_05110 PF00551 Formyl transferase AFR_05115 PF02142 MGS-like domain AFR_05115 PF01808 AICARFT/IMPCHase bienzyme AFR_05125 PF00056 lactate/malate dehydrogenase, NAD binding domain AFR_05125 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFR_05130 PF00753 Metallo-beta-lactamase superfamily AFR_05135 PF16655 PhoD-like phosphatase, N-terminal domain AFR_05135 PF09423 PhoD-like phosphatase AFR_05140 PF00180 Isocitrate/isopropylmalate dehydrogenase AFR_05145 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AFR_05145 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AFR_05150 PF00455 DeoR C terminal sensor domain AFR_05150 PF08220 DeoR-like helix-turn-helix domain AFR_05155 PF00535 Glycosyl transferase family 2 AFR_05165 PF03808 Glycosyl transferase WecB/TagA/CpsF family AFR_05220 PF00005 ABC transporter AFR_05230 PF00005 ABC transporter AFR_05245 PF13411 MerR HTH family regulatory protein AFR_05250 PF00106 short chain dehydrogenase AFR_05255 PF00311 Phosphoenolpyruvate carboxylase AFR_05270 PF00553 Cellulose binding domain AFR_05270 PF01341 Glycosyl hydrolases family 6 AFR_05285 PF00551 Formyl transferase AFR_05285 PF00378 Enoyl-CoA hydratase/isomerase AFR_05285 PF02911 Formyl transferase, C-terminal domain AFR_05290 PF00271 Helicase conserved C-terminal domain AFR_05290 PF00270 DEAD/DEAH box helicase AFR_05290 PF17757 UvrB interaction domain AFR_05290 PF03461 TRCF domain AFR_05290 PF02559 CarD-like/TRCF domain AFR_05300 PF03819 MazG nucleotide pyrophosphohydrolase domain AFR_05310 PF02661 Fic/DOC family AFR_05310 PF12728 Helix-turn-helix domain AFR_05325 PF03952 Enolase, N-terminal domain AFR_05325 PF00113 Enolase, C-terminal TIM barrel domain AFR_05340 PF00583 Acetyltransferase (GNAT) family AFR_05345 PF02541 Ppx/GppA phosphatase family AFR_05365 PF03167 Uracil DNA glycosylase superfamily AFR_05380 PF17863 AAA lid domain AFR_05380 PF07726 ATPase family associated with various cellular activities (AAA) AFR_05395 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_05410 PF02803 Thiolase, C-terminal domain AFR_05410 PF00108 Thiolase, N-terminal domain AFR_05430 PF00291 Pyridoxal-phosphate dependent enzyme AFR_05430 PF00571 CBS domain AFR_05445 PF00072 Response regulator receiver domain AFR_05445 PF00990 Diguanylate cyclase, GGDEF domain AFR_05450 PF01928 CYTH domain AFR_05450 PF05235 CHAD domain AFR_05455 PF03976 Polyphosphate kinase 2 (PPK2) AFR_05460 PF12706 Beta-lactamase superfamily domain AFR_05460 PF00753 Metallo-beta-lactamase superfamily AFR_05475 PF13180 PDZ domain AFR_05495 PF01625 Peptide methionine sulfoxide reductase AFR_05505 PF01053 Cys/Met metabolism PLP-dependent enzyme AFR_05510 PF01425 Amidase AFR_05515 PF00291 Pyridoxal-phosphate dependent enzyme AFR_05515 PF13291 ACT domain AFR_05520 PF01272 Transcription elongation factor, GreA/GreB, C-term AFR_05520 PF03449 Transcription elongation factor, N-terminal AFR_05530 PF02585 GlcNAc-PI de-N-acetylase AFR_05540 PF00563 EAL domain AFR_05540 PF00990 Diguanylate cyclase, GGDEF domain AFR_05540 PF03707 Bacterial signalling protein N terminal repeat AFR_05545 PF03190 Protein of unknown function, DUF255 AFR_05550 PF02222 ATP-grasp domain AFR_05550 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AFR_05555 PF00731 AIR carboxylase AFR_05565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_05565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_05565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_05570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_05570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_05570 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_05580 PF13360 PQQ-like domain AFR_05580 PF00069 Protein kinase domain AFR_05585 PF01494 FAD binding domain AFR_05600 PF00753 Metallo-beta-lactamase superfamily AFR_05620 PF00501 AMP-binding enzyme AFR_05620 PF13193 AMP-binding enzyme C-terminal domain AFR_05635 PF00483 Nucleotidyl transferase AFR_05635 PF01050 Mannose-6-phosphate isomerase AFR_05645 PF01996 F420-0:Gamma-glutamyl ligase AFR_05645 PF00881 Nitroreductase family AFR_05660 PF04055 Radical SAM superfamily AFR_05665 PF02467 Transcription factor WhiB AFR_05680 PF01522 Polysaccharide deacetylase AFR_05690 PF00171 Aldehyde dehydrogenase family AFR_05700 PF00171 Aldehyde dehydrogenase family AFR_05710 PF04493 Endonuclease V AFR_05715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFR_05715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFR_05715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFR_05715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFR_05720 PF03966 Trm112p-like protein AFR_05735 PF01238 Phosphomannose isomerase type I AFR_05750 PF03239 Iron permease FTR1 family AFR_05755 PF13473 Cupredoxin-like domain AFR_05755 PF09375 Imelysin AFR_05760 PF04261 Dyp-type peroxidase family AFR_05760 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFR_05765 PF00486 Transcriptional regulatory protein, C terminal AFR_05765 PF00072 Response regulator receiver domain AFR_05770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_05770 PF00672 HAMP domain AFR_05770 PF00512 His Kinase A (phospho-acceptor) domain AFR_05785 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFR_05785 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AFR_05790 PF13302 Acetyltransferase (GNAT) domain AFR_05800 PF07517 SecA DEAD-like domain AFR_05800 PF01043 SecA preprotein cross-linking domain AFR_05800 PF02810 SEC-C motif AFR_05800 PF07516 SecA Wing and Scaffold domain AFR_05810 PF01037 Lrp/AsnC ligand binding domain AFR_05830 PF00171 Aldehyde dehydrogenase family AFR_05840 PF00472 RF-1 domain AFR_05840 PF03462 PCRF domain AFR_05845 PF00005 ABC transporter AFR_05850 PF02687 FtsX-like permease family AFR_05850 PF18075 FtsX extracellular domain AFR_05855 PF10145 Phage-related minor tail protein AFR_05855 PF01551 Peptidase family M23 AFR_05855 PF01464 Transglycosylase SLT domain AFR_05860 PF01668 SmpB protein AFR_05880 PF00196 Bacterial regulatory proteins, luxR family AFR_05880 PF00072 Response regulator receiver domain AFR_05890 PF01048 Phosphorylase superfamily AFR_05895 PF02622 Uncharacterized ACR, COG1678 AFR_05910 PF00196 Bacterial regulatory proteins, luxR family AFR_05920 PF07859 alpha/beta hydrolase fold AFR_05925 PF00296 Luciferase-like monooxygenase AFR_05930 PF07729 FCD domain AFR_05930 PF00392 Bacterial regulatory proteins, gntR family AFR_05940 PF13411 MerR HTH family regulatory protein AFR_05940 PF07739 TipAS antibiotic-recognition domain AFR_05975 PF06750 Bacterial Peptidase A24 N-terminal domain AFR_05975 PF01478 Type IV leader peptidase family AFR_05980 PF08334 Type II secretion system (T2SS), protein G AFR_05980 PF07963 Prokaryotic N-terminal methylation motif AFR_05985 PF00482 Type II secretion system (T2SS), protein F AFR_05990 PF00437 Type II/IV secretion system protein AFR_05995 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFR_05995 PF00437 Type II/IV secretion system protein AFR_06000 PF02311 AraC-like ligand binding domain AFR_06000 PF12833 Helix-turn-helix domain AFR_06010 PF02031 Streptomyces extracellular neutral proteinase (M7) family AFR_06020 PF01740 STAS domain AFR_06030 PF00486 Transcriptional regulatory protein, C terminal AFR_06030 PF00072 Response regulator receiver domain AFR_06035 PF00989 PAS fold AFR_06035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_06035 PF00672 HAMP domain AFR_06035 PF18698 Histidine kinase sensor domain AFR_06035 PF00512 His Kinase A (phospho-acceptor) domain AFR_06040 PF00486 Transcriptional regulatory protein, C terminal AFR_06040 PF00072 Response regulator receiver domain AFR_06045 PF01047 MarR family AFR_06055 PF03707 Bacterial signalling protein N terminal repeat AFR_06055 PF00990 Diguanylate cyclase, GGDEF domain AFR_06055 PF00563 EAL domain AFR_06145 PF00082 Subtilase family AFR_06165 PF00005 ABC transporter AFR_06165 PF13732 Domain of unknown function (DUF4162) AFR_06170 PF01061 ABC-2 type transporter AFR_06175 PF07729 FCD domain AFR_06175 PF00392 Bacterial regulatory proteins, gntR family AFR_06180 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFR_06185 PF01177 Asp/Glu/Hydantoin racemase AFR_06190 PF00291 Pyridoxal-phosphate dependent enzyme AFR_06205 PF13086 AAA domain AFR_06205 PF13195 Protein of unknown function (DUF4011) AFR_06205 PF13087 AAA domain AFR_06210 PF12833 Helix-turn-helix domain AFR_06210 PF01965 DJ-1/PfpI family AFR_06225 PF08448 PAS fold AFR_06225 PF00563 EAL domain AFR_06225 PF00990 Diguanylate cyclase, GGDEF domain AFR_06230 PF02130 Uncharacterized protein family UPF0054 AFR_06230 PF07883 Cupin domain AFR_06245 PF04536 TPM domain AFR_06250 PF08240 Alcohol dehydrogenase GroES-like domain AFR_06250 PF00107 Zinc-binding dehydrogenase AFR_06255 PF00753 Metallo-beta-lactamase superfamily AFR_06270 PF13298 DNA polymerase Ligase (LigD) AFR_06270 PF01068 ATP dependent DNA ligase domain AFR_06270 PF04679 ATP dependent DNA ligase C terminal region AFR_06275 PF12833 Helix-turn-helix domain AFR_06280 PF01494 FAD binding domain AFR_06285 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFR_06295 PF07690 Major Facilitator Superfamily AFR_06310 PF00857 Isochorismatase family AFR_06315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFR_06315 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AFR_06320 PF00196 Bacterial regulatory proteins, luxR family AFR_06325 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFR_06330 PF09438 Domain of unknown function (DUF2017) AFR_06335 PF00248 Aldo/keto reductase family AFR_06340 PF14464 Prokaryotic homologs of the JAB domain AFR_06345 PF02597 ThiS family AFR_06350 PF00291 Pyridoxal-phosphate dependent enzyme AFR_06360 PF12706 Beta-lactamase superfamily domain AFR_06365 PF00534 Glycosyl transferases group 1 AFR_06365 PF13579 Glycosyl transferase 4-like domain AFR_06370 PF01138 3' exoribonuclease family, domain 1 AFR_06370 PF03725 3' exoribonuclease family, domain 2 AFR_06375 PF01725 Ham1 family AFR_06385 PF00005 ABC transporter AFR_06405 PF00221 Aromatic amino acid lyase AFR_06410 PF01979 Amidohydrolase family AFR_06415 PF01979 Amidohydrolase family AFR_06420 PF01546 Peptidase family M20/M25/M40 AFR_06420 PF07687 Peptidase dimerisation domain AFR_06425 PF01175 Urocanase Rossmann-like domain AFR_06425 PF17392 Urocanase C-terminal domain AFR_06425 PF17391 Urocanase N-terminal domain AFR_06470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_06475 PF00578 AhpC/TSA family AFR_06495 PF08281 Sigma-70, region 4 AFR_06495 PF04542 Sigma-70 region 2 AFR_06500 PF04234 CopC domain AFR_06510 PF00929 Exonuclease AFR_06565 PF00293 NUDIX domain AFR_06615 PF00563 EAL domain AFR_06615 PF03707 Bacterial signalling protein N terminal repeat AFR_06615 PF00990 Diguanylate cyclase, GGDEF domain AFR_06620 PF00486 Transcriptional regulatory protein, C terminal AFR_06620 PF00498 FHA domain AFR_06620 PF03704 Bacterial transcriptional activator domain AFR_06635 PF01266 FAD dependent oxidoreductase AFR_06640 PF00528 Binding-protein-dependent transport system inner membrane component AFR_06645 PF00528 Binding-protein-dependent transport system inner membrane component AFR_06655 PF00005 ABC transporter AFR_06655 PF08402 TOBE domain AFR_06660 PF00171 Aldehyde dehydrogenase family AFR_06670 PF07728 AAA domain (dynein-related subfamily) AFR_06670 PF08406 CbbQ/NirQ/NorQ C-terminal AFR_06690 PF08281 Sigma-70, region 4 AFR_06690 PF04542 Sigma-70 region 2 AFR_06710 PF00072 Response regulator receiver domain AFR_06710 PF00196 Bacterial regulatory proteins, luxR family AFR_06715 PF13492 GAF domain AFR_06715 PF07730 Histidine kinase AFR_06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_06725 PF00005 ABC transporter AFR_06730 PF00005 ABC transporter AFR_06745 PF00082 Subtilase family AFR_06750 PF17964 Bacterial Ig domain AFR_06750 PF03734 L,D-transpeptidase catalytic domain AFR_06755 PF17964 Bacterial Ig domain AFR_06755 PF03734 L,D-transpeptidase catalytic domain AFR_06770 PF03704 Bacterial transcriptional activator domain AFR_06770 PF00931 NB-ARC domain AFR_06770 PF00486 Transcriptional regulatory protein, C terminal AFR_06770 PF00486 Transcriptional regulatory protein, C terminal AFR_06770 PF00931 NB-ARC domain AFR_06770 PF03704 Bacterial transcriptional activator domain AFR_06780 PF00072 Response regulator receiver domain AFR_06795 PF00437 Type II/IV secretion system protein AFR_06840 PF09997 Predicted membrane protein (DUF2238) AFR_06865 PF04229 GrpB protein AFR_06870 PF01544 CorA-like Mg2+ transporter protein AFR_06880 PF00005 ABC transporter AFR_06880 PF13732 Domain of unknown function (DUF4162) AFR_06890 PF01979 Amidohydrolase family AFR_06905 PF01022 Bacterial regulatory protein, arsR family AFR_06910 PF00296 Luciferase-like monooxygenase AFR_06915 PF00293 NUDIX domain AFR_06920 PF00583 Acetyltransferase (GNAT) family AFR_06925 PF00728 Glycosyl hydrolase family 20, catalytic domain AFR_06925 PF02838 Glycosyl hydrolase family 20, domain 2 AFR_06945 PF04075 F420H(2)-dependent quinone reductase AFR_06950 PF13280 WYL domain AFR_06950 PF08279 HTH domain AFR_06985 PF03704 Bacterial transcriptional activator domain AFR_06985 PF00498 FHA domain AFR_06985 PF00486 Transcriptional regulatory protein, C terminal AFR_06995 PF10282 Lactonase, 7-bladed beta-propeller AFR_07015 PF00480 ROK family AFR_07020 PF01261 Xylose isomerase-like TIM barrel AFR_07025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_07025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_07030 PF07690 Major Facilitator Superfamily AFR_07035 PF00128 Alpha amylase, catalytic domain AFR_07045 PF03707 Bacterial signalling protein N terminal repeat AFR_07045 PF00563 EAL domain AFR_07045 PF00990 Diguanylate cyclase, GGDEF domain AFR_07070 PF02223 Thymidylate kinase AFR_07080 PF00140 Sigma-70 factor, region 1.2 AFR_07080 PF04545 Sigma-70, region 4 AFR_07080 PF04539 Sigma-70 region 3 AFR_07080 PF04542 Sigma-70 region 2 AFR_07085 PF08239 Bacterial SH3 domain AFR_07085 PF00877 NlpC/P60 family AFR_07085 PF01476 LysM domain AFR_07090 PF12823 Domain of unknown function (DUF3817) AFR_07130 PF03992 Antibiotic biosynthesis monooxygenase AFR_07135 PF07690 Major Facilitator Superfamily AFR_07155 PF00196 Bacterial regulatory proteins, luxR family AFR_07155 PF00072 Response regulator receiver domain AFR_07165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_07165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_07175 PF00005 ABC transporter AFR_07175 PF13732 Domain of unknown function (DUF4162) AFR_07180 PF01061 ABC-2 type transporter AFR_07185 PF01047 MarR family AFR_07190 PF01494 FAD binding domain AFR_07205 PF00512 His Kinase A (phospho-acceptor) domain AFR_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_07205 PF00672 HAMP domain AFR_07210 PF00072 Response regulator receiver domain AFR_07210 PF00486 Transcriptional regulatory protein, C terminal AFR_07225 PF00005 ABC transporter AFR_07230 PF02687 FtsX-like permease family AFR_07230 PF12704 MacB-like periplasmic core domain AFR_07245 PF08281 Sigma-70, region 4 AFR_07245 PF04542 Sigma-70 region 2 AFR_07250 PF04542 Sigma-70 region 2 AFR_07250 PF12680 SnoaL-like domain AFR_07250 PF08281 Sigma-70, region 4 AFR_07280 PF00436 Single-strand binding protein family AFR_07285 PF03186 CobD/Cbib protein AFR_07290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFR_07290 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFR_07300 PF01435 Peptidase family M48 AFR_07305 PF07687 Peptidase dimerisation domain AFR_07305 PF01546 Peptidase family M20/M25/M40 AFR_07310 PF01494 FAD binding domain AFR_07325 PF04679 ATP dependent DNA ligase C terminal region AFR_07325 PF01068 ATP dependent DNA ligase domain AFR_07340 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFR_07340 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFR_07345 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_07350 PF00912 Transglycosylase AFR_07350 PF00905 Penicillin binding protein transpeptidase domain AFR_07350 PF17092 Penicillin-binding protein OB-like domain AFR_07360 PF00155 Aminotransferase class I and II AFR_07365 PF02277 Phosphoribosyltransferase AFR_07370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_07370 PF14824 Sirohaem biosynthesis protein central AFR_07370 PF10414 Sirohaem synthase dimerisation region AFR_07380 PF00982 Glycosyltransferase family 20 AFR_07390 PF00005 ABC transporter AFR_07390 PF12848 ABC transporter AFR_07415 PF01152 Bacterial-like globin AFR_07425 PF00924 Mechanosensitive ion channel AFR_07455 PF17174 Domain of unknown function (DUF5130) AFR_07465 PF01433 Peptidase family M1 domain AFR_07465 PF11838 ERAP1-like C-terminal domain AFR_07470 PF01323 DSBA-like thioredoxin domain AFR_07485 PF07859 alpha/beta hydrolase fold AFR_07490 PF02502 Ribose/Galactose Isomerase AFR_07500 PF13530 Sterol carrier protein domain AFR_07500 PF17668 Acetyltransferase (GNAT) domain AFR_07515 PF00188 Cysteine-rich secretory protein family AFR_07535 PF05698 Bacterial trigger factor protein (TF) C-terminus AFR_07535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFR_07535 PF05697 Bacterial trigger factor protein (TF) AFR_07540 PF00574 Clp protease AFR_07545 PF00574 Clp protease AFR_07550 PF06689 ClpX C4-type zinc finger AFR_07550 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_07550 PF07724 AAA domain (Cdc48 subfamily) AFR_07560 PF00795 Carbon-nitrogen hydrolase AFR_07580 PF10458 Valyl tRNA synthetase tRNA binding arm AFR_07580 PF00133 tRNA synthetases class I (I, L, M and V) AFR_07580 PF08264 Anticodon-binding domain of tRNA AFR_07585 PF08245 Mur ligase middle domain AFR_07585 PF02875 Mur ligase family, glutamate ligase domain AFR_07610 PF00334 Nucleoside diphosphate kinase AFR_07620 PF16655 PhoD-like phosphatase, N-terminal domain AFR_07620 PF09423 PhoD-like phosphatase AFR_07625 PF00133 tRNA synthetases class I (I, L, M and V) AFR_07625 PF08264 Anticodon-binding domain of tRNA AFR_07635 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AFR_07645 PF12697 Alpha/beta hydrolase family AFR_07670 PF10150 Ribonuclease E/G family AFR_07680 PF00829 Ribosomal prokaryotic L21 protein AFR_07685 PF01016 Ribosomal L27 protein AFR_07690 PF01926 50S ribosome-binding GTPase AFR_07690 PF01018 GTP1/OBG AFR_07690 PF09269 Domain of unknown function (DUF1967) AFR_07695 PF00583 Acetyltransferase (GNAT) family AFR_07710 PF11838 ERAP1-like C-terminal domain AFR_07710 PF01433 Peptidase family M1 domain AFR_07715 PF00072 Response regulator receiver domain AFR_07715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_07715 PF00512 His Kinase A (phospho-acceptor) domain AFR_07715 PF08448 PAS fold AFR_07715 PF13188 PAS domain AFR_07720 PF01467 Cytidylyltransferase-like AFR_07730 PF00300 Histidine phosphatase superfamily (branch 1) AFR_07740 PF02645 Uncharacterised protein, DegV family COG1307 AFR_07750 PF17827 PrmC N-terminal domain AFR_07750 PF05175 Methyltransferase small domain AFR_07755 PF10531 SLBB domain AFR_07760 PF13567 Domain of unknown function (DUF4131) AFR_07760 PF00753 Metallo-beta-lactamase superfamily AFR_07760 PF03772 Competence protein AFR_07770 PF17678 Glycosyl hydrolase family 92 N-terminal domain AFR_07770 PF07971 Glycosyl hydrolase family 92 AFR_07785 PF01649 Ribosomal protein S20 AFR_07805 PF06421 GTP-binding protein LepA C-terminus AFR_07805 PF00679 Elongation factor G C-terminus AFR_07805 PF00009 Elongation factor Tu GTP binding domain AFR_07805 PF03144 Elongation factor Tu domain 2 AFR_07825 PF00378 Enoyl-CoA hydratase/isomerase AFR_07830 PF04055 Radical SAM superfamily AFR_07840 PF01628 HrcA protein C terminal domain AFR_07845 PF00226 DnaJ domain AFR_07845 PF01556 DnaJ C terminal domain AFR_07845 PF00684 DnaJ central domain AFR_07850 PF04452 RNA methyltransferase AFR_07855 PF01032 FecCD transport family AFR_07860 PF01032 FecCD transport family AFR_07865 PF00005 ABC transporter AFR_07870 PF03621 MbtH-like protein AFR_07875 PF00664 ABC transporter transmembrane region AFR_07875 PF00005 ABC transporter AFR_07880 PF00664 ABC transporter transmembrane region AFR_07880 PF00005 ABC transporter AFR_07895 PF02261 Aspartate decarboxylase AFR_07910 PF02911 Formyl transferase, C-terminal domain AFR_07910 PF01370 NAD dependent epimerase/dehydratase family AFR_07910 PF00551 Formyl transferase AFR_07915 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AFR_07935 PF07691 PA14 domain AFR_07935 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_07935 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_07935 PF14310 Fibronectin type III-like domain AFR_07945 PF01230 HIT domain AFR_07950 PF00144 Beta-lactamase AFR_07955 PF02562 PhoH-like protein AFR_07960 PF02130 Uncharacterized protein family UPF0054 AFR_07965 PF00571 CBS domain AFR_07965 PF01595 Cyclin M transmembrane N-terminal domain AFR_07965 PF03471 Transporter associated domain AFR_07975 PF01926 50S ribosome-binding GTPase AFR_07975 PF07650 KH domain AFR_07995 PF11967 Recombination protein O N terminal AFR_07995 PF02565 Recombination protein O C terminal AFR_08000 PF01255 Putative undecaprenyl diphosphate synthase AFR_08015 PF01910 Thiamine-binding protein AFR_08045 PF00005 ABC transporter AFR_08050 PF09819 ABC-type cobalt transport system, permease component AFR_08055 PF00561 alpha/beta hydrolase fold AFR_08070 PF01475 Ferric uptake regulator family AFR_08075 PF01022 Bacterial regulatory protein, arsR family AFR_08080 PF00950 ABC 3 transport family AFR_08085 PF00005 ABC transporter AFR_08090 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment AFR_08090 PF01297 Zinc-uptake complex component A periplasmic AFR_08110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_08110 PF03129 Anticodon binding domain AFR_08115 PF02625 XdhC and CoxI family AFR_08115 PF13478 XdhC Rossmann domain AFR_08120 PF01207 Dihydrouridine synthase (Dus) AFR_08135 PF03259 Roadblock/LC7 domain AFR_08160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_08160 PF00672 HAMP domain AFR_08165 PF01966 HD domain AFR_08165 PF13286 Phosphohydrolase-associated domain AFR_08170 PF01807 CHC2 zinc finger AFR_08170 PF08275 DNA primase catalytic core, N-terminal domain AFR_08170 PF10410 DnaB-helicase binding domain of primase AFR_08170 PF13662 Toprim domain AFR_08170 PF08278 DNA primase DnaG DnaB-binding AFR_08180 PF00005 ABC transporter AFR_08195 PF03631 Virulence factor BrkB AFR_08200 PF00480 ROK family AFR_08205 PF00005 ABC transporter AFR_08210 PF02653 Branched-chain amino acid transport system / permease component AFR_08220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_08220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_08240 PF01593 Flavin containing amine oxidoreductase AFR_08255 PF13419 Haloacid dehalogenase-like hydrolase AFR_08260 PF00155 Aminotransferase class I and II AFR_08285 PF00400 WD domain, G-beta repeat AFR_08285 PF12894 Anaphase-promoting complex subunit 4 WD40 domain AFR_08325 PF01022 Bacterial regulatory protein, arsR family AFR_08335 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFR_08445 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_08445 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_08455 PF00171 Aldehyde dehydrogenase family AFR_08460 PF00588 SpoU rRNA Methylase family AFR_08465 PF01636 Phosphotransferase enzyme family AFR_08475 PF00196 Bacterial regulatory proteins, luxR family AFR_08480 PF08241 Methyltransferase domain AFR_08505 PF02733 Dak1 domain AFR_08510 PF03485 Arginyl tRNA synthetase N terminal domain AFR_08510 PF05746 DALR anticodon binding domain AFR_08510 PF00750 tRNA synthetases class I (R) AFR_08535 PF17863 AAA lid domain AFR_08535 PF07726 ATPase family associated with various cellular activities (AAA) AFR_08555 PF02872 5'-nucleotidase, C-terminal domain AFR_08555 PF00149 Calcineurin-like phosphoesterase AFR_08570 PF13411 MerR HTH family regulatory protein AFR_08575 PF00069 Protein kinase domain AFR_08590 PF00069 Protein kinase domain AFR_08590 PF03793 PASTA domain AFR_08595 PF01975 Survival protein SurE AFR_08605 PF01494 FAD binding domain AFR_08610 PF00440 Bacterial regulatory proteins, tetR family AFR_08610 PF13305 Tetracyclin repressor-like, C-terminal domain AFR_08615 PF00107 Zinc-binding dehydrogenase AFR_08615 PF08240 Alcohol dehydrogenase GroES-like domain AFR_08620 PF00440 Bacterial regulatory proteins, tetR family AFR_08620 PF16925 Tetracyclin repressor-like, C-terminal domain AFR_08625 PF16864 Dimerisation domain AFR_08625 PF00891 O-methyltransferase domain AFR_08635 PF01545 Cation efflux family AFR_08645 PF13538 UvrD-like helicase C-terminal domain AFR_08655 PF00484 Carbonic anhydrase AFR_08670 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_08670 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_08675 PF12833 Helix-turn-helix domain AFR_08675 PF12852 Cupin AFR_08685 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_08685 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_08690 PF00550 Phosphopantetheine attachment site AFR_08695 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFR_08695 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFR_08700 PF00698 Acyl transferase domain AFR_08705 PF17853 GGDEF-like domain AFR_08705 PF13556 PucR C-terminal helix-turn-helix domain AFR_08735 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFR_08745 PF07690 Major Facilitator Superfamily AFR_08760 PF00672 HAMP domain AFR_08760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_08760 PF02203 Tar ligand binding domain homologue AFR_08765 PF00456 Transketolase, thiamine diphosphate binding domain AFR_08765 PF17831 Pyruvate dehydrogenase E1 component middle domain AFR_08770 PF01894 Uncharacterised protein family UPF0047 AFR_08780 PF13732 Domain of unknown function (DUF4162) AFR_08780 PF00005 ABC transporter AFR_08790 PF02780 Transketolase, C-terminal domain AFR_08790 PF02779 Transketolase, pyrimidine binding domain AFR_08795 PF11253 Protein of unknown function (DUF3052) AFR_08800 PF00578 AhpC/TSA family AFR_08835 PF00293 NUDIX domain AFR_08855 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_08855 PF13192 Thioredoxin domain AFR_08865 PF01209 ubiE/COQ5 methyltransferase family AFR_08890 PF01784 NIF3 (NGG1p interacting factor 3) AFR_08900 PF13456 Reverse transcriptase-like AFR_08900 PF00300 Histidine phosphatase superfamily (branch 1) AFR_08905 PF00553 Cellulose binding domain AFR_08905 PF00704 Glycosyl hydrolases family 18 AFR_08905 PF00041 Fibronectin type III domain AFR_08915 PF00474 Sodium:solute symporter family AFR_08925 PF01925 Sulfite exporter TauE/SafE AFR_08955 PF00072 Response regulator receiver domain AFR_08955 PF00486 Transcriptional regulatory protein, C terminal AFR_08960 PF08446 PAS fold AFR_08960 PF00512 His Kinase A (phospho-acceptor) domain AFR_08960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_08960 PF01590 GAF domain AFR_08960 PF00360 Phytochrome region AFR_08965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFR_08965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_08970 PF00291 Pyridoxal-phosphate dependent enzyme AFR_08970 PF13291 ACT domain AFR_08985 PF03466 LysR substrate binding domain AFR_08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_08995 PF00925 GTP cyclohydrolase II AFR_09010 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFR_09010 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFR_09025 PF00773 RNB domain AFR_09025 PF00575 S1 RNA binding domain AFR_09025 PF08206 Ribonuclease B OB domain AFR_09025 PF17876 Cold shock domain AFR_09035 PF02548 Ketopantoate hydroxymethyltransferase AFR_09040 PF00795 Carbon-nitrogen hydrolase AFR_09040 PF02540 NAD synthase AFR_09045 PF00120 Glutamine synthetase, catalytic domain AFR_09045 PF03951 Glutamine synthetase, beta-Grasp domain AFR_09050 PF03994 Domain of Unknown Function (DUF350) AFR_09055 PF06772 Bacterial low temperature requirement A protein (LtrA) AFR_09060 PF00583 Acetyltransferase (GNAT) family AFR_09065 PF00117 Glutamine amidotransferase class-I AFR_09065 PF00425 chorismate binding enzyme AFR_09065 PF04715 Anthranilate synthase component I, N terminal region AFR_09070 PF03710 Glutamate-ammonia ligase adenylyltransferase AFR_09070 PF08335 GlnD PII-uridylyltransferase AFR_09090 PF09594 Glycosyltransferase family 87 AFR_09100 PF00196 Bacterial regulatory proteins, luxR family AFR_09115 PF00120 Glutamine synthetase, catalytic domain AFR_09115 PF03951 Glutamine synthetase, beta-Grasp domain AFR_09120 PF00589 Phage integrase family AFR_09120 PF02899 Phage integrase, N-terminal SAM-like domain AFR_09155 PF00931 NB-ARC domain AFR_09155 PF03704 Bacterial transcriptional activator domain AFR_09155 PF00486 Transcriptional regulatory protein, C terminal AFR_09165 PF03091 CutA1 divalent ion tolerance protein AFR_09190 PF13829 Domain of unknown function (DUF4191) AFR_09205 PF08281 Sigma-70, region 4 AFR_09205 PF04542 Sigma-70 region 2 AFR_09225 PF04055 Radical SAM superfamily AFR_09225 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AFR_09230 PF00152 tRNA synthetases class II (D, K and N) AFR_09230 PF01336 OB-fold nucleic acid binding domain AFR_09240 PF03099 Biotin/lipoate A/B protein ligase family AFR_09250 PF01370 NAD dependent epimerase/dehydratase family AFR_09250 PF08338 Domain of unknown function (DUF1731) AFR_09255 PF02817 e3 binding domain AFR_09255 PF00364 Biotin-requiring enzyme AFR_09255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFR_09260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_09260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_09270 PF00883 Cytosol aminopeptidase family, catalytic domain AFR_09270 PF02789 Cytosol aminopeptidase family, N-terminal domain AFR_09275 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFR_09275 PF01571 Aminomethyltransferase folate-binding domain AFR_09280 PF02654 Cobalamin-5-phosphate synthase AFR_09285 PF02277 Phosphoribosyltransferase AFR_09300 PF00248 Aldo/keto reductase family AFR_09320 PF00005 ABC transporter AFR_09330 PF03591 AzlC protein AFR_09340 PF11241 Protein of unknown function (DUF3043) AFR_09345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFR_09350 PF02445 Quinolinate synthetase A protein AFR_09360 PF02595 Glycerate kinase family AFR_09365 PF01521 Iron-sulphur cluster biosynthesis AFR_09370 PF00294 pfkB family carbohydrate kinase AFR_09380 PF01206 Sulfurtransferase TusA AFR_09390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFR_09395 PF12270 Cytochrome c oxidase subunit IV AFR_09405 PF00591 Glycosyl transferase family, a/b domain AFR_09405 PF02885 Glycosyl transferase family, helical bundle domain AFR_09415 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AFR_09415 PF05425 Copper resistance protein D AFR_09420 PF00510 Cytochrome c oxidase subunit III AFR_09425 PF00034 Cytochrome c AFR_09425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFR_09430 PF00355 Rieske [2Fe-2S] domain AFR_09435 PF13631 Cytochrome b(N-terminal)/b6/petB AFR_09455 PF00483 Nucleotidyl transferase AFR_09460 PF00293 NUDIX domain AFR_09460 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AFR_09460 PF09297 NADH pyrophosphatase zinc ribbon domain AFR_09465 PF13291 ACT domain AFR_09465 PF04607 Region found in RelA / SpoT proteins AFR_09465 PF02824 TGS domain AFR_09470 PF01541 GIY-YIG catalytic domain AFR_09470 PF00929 Exonuclease AFR_09485 PF01435 Peptidase family M48 AFR_09485 PF16491 CAAX prenyl protease N-terminal, five membrane helices AFR_09490 PF00534 Glycosyl transferases group 1 AFR_09490 PF13439 Glycosyltransferase Family 4 AFR_09495 PF00664 ABC transporter transmembrane region AFR_09495 PF00005 ABC transporter AFR_09505 PF04542 Sigma-70 region 2 AFR_09505 PF08281 Sigma-70, region 4 AFR_09515 PF00005 ABC transporter AFR_09535 PF00072 Response regulator receiver domain AFR_09535 PF00196 Bacterial regulatory proteins, luxR family AFR_09540 PF07730 Histidine kinase AFR_09540 PF17200 Single Cache domain 2 AFR_09555 PF00480 ROK family AFR_09575 PF00982 Glycosyltransferase family 20 AFR_09590 PF13545 Crp-like helix-turn-helix domain AFR_09590 PF00027 Cyclic nucleotide-binding domain AFR_09600 PF16473 3' exoribonuclease, RNase T-like AFR_09615 PF00440 Bacterial regulatory proteins, tetR family AFR_09615 PF17754 MftR C-terminal domain AFR_09625 PF00365 Phosphofructokinase AFR_09630 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFR_09630 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_09640 PF00255 Glutathione peroxidase AFR_09645 PF00553 Cellulose binding domain AFR_09645 PF00041 Fibronectin type III domain AFR_09645 PF00704 Glycosyl hydrolases family 18 AFR_09650 PF01474 Class-II DAHP synthetase family AFR_09655 PF01212 Beta-eliminating lyase AFR_09665 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_09665 PF16197 Ketoacyl-synthetase C-terminal extension AFR_09665 PF14765 Polyketide synthase dehydratase AFR_09665 PF08240 Alcohol dehydrogenase GroES-like domain AFR_09665 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_09665 PF00698 Acyl transferase domain AFR_09665 PF00550 Phosphopantetheine attachment site AFR_09665 PF08659 KR domain AFR_09685 PF01261 Xylose isomerase-like TIM barrel AFR_09690 PF03793 PASTA domain AFR_09690 PF00069 Protein kinase domain AFR_09725 PF02219 Methylenetetrahydrofolate reductase AFR_09740 PF00929 Exonuclease AFR_09740 PF01541 GIY-YIG catalytic domain AFR_09750 PF07690 Major Facilitator Superfamily AFR_09765 PF01494 FAD binding domain AFR_09780 PF02223 Thymidylate kinase AFR_09790 PF13183 4Fe-4S dicluster domain AFR_09790 PF13085 2Fe-2S iron-sulfur cluster binding domain AFR_09795 PF02910 Fumarate reductase flavoprotein C-term AFR_09795 PF00890 FAD binding domain AFR_09820 PF01047 MarR family AFR_09825 PF01593 Flavin containing amine oxidoreductase AFR_09830 PF00535 Glycosyl transferase family 2 AFR_09850 PF04073 Aminoacyl-tRNA editing domain AFR_09850 PF03129 Anticodon binding domain AFR_09850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_09865 PF00106 short chain dehydrogenase AFR_09885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFR_09885 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFR_09885 PF14579 Helix-hairpin-helix motif AFR_09885 PF02811 PHP domain AFR_09890 PF00720 Subtilisin inhibitor-like AFR_09895 PF00082 Subtilase family AFR_09895 PF05922 Peptidase inhibitor I9 AFR_09910 PF00817 impB/mucB/samB family AFR_09910 PF11799 impB/mucB/samB family C-terminal domain AFR_09910 PF11798 IMS family HHH motif AFR_09920 PF01841 Transglutaminase-like superfamily AFR_09920 PF13559 Domain of unknown function (DUF4129) AFR_09920 PF11992 Domain of unknown function (DUF3488) AFR_09930 PF07726 ATPase family associated with various cellular activities (AAA) AFR_09930 PF17863 AAA lid domain AFR_09935 PF08264 Anticodon-binding domain of tRNA AFR_09935 PF13603 Leucyl-tRNA synthetase, Domain 2 AFR_09935 PF09334 tRNA synthetases class I (M) AFR_09940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFR_09955 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFR_09960 PF08245 Mur ligase middle domain AFR_09960 PF01225 Mur ligase family, catalytic domain AFR_09960 PF02875 Mur ligase family, glutamate ligase domain AFR_09965 PF01476 LysM domain AFR_09965 PF00877 NlpC/P60 family AFR_09965 PF08239 Bacterial SH3 domain AFR_09970 PF02381 MraZ protein, putative antitoxin-like AFR_09975 PF01795 MraW methylase family AFR_09985 PF00905 Penicillin binding protein transpeptidase domain AFR_09985 PF03717 Penicillin-binding Protein dimerisation domain AFR_09990 PF08245 Mur ligase middle domain AFR_09990 PF02875 Mur ligase family, glutamate ligase domain AFR_09990 PF01225 Mur ligase family, catalytic domain AFR_09995 PF02875 Mur ligase family, glutamate ligase domain AFR_09995 PF08245 Mur ligase middle domain AFR_09995 PF01225 Mur ligase family, catalytic domain AFR_10000 PF00953 Glycosyl transferase family 4 AFR_10000 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFR_10005 PF01098 Cell cycle protein AFR_10010 PF03033 Glycosyltransferase family 28 N-terminal domain AFR_10010 PF04101 Glycosyltransferase family 28 C-terminal domain AFR_10015 PF01225 Mur ligase family, catalytic domain AFR_10015 PF08245 Mur ligase middle domain AFR_10015 PF02875 Mur ligase family, glutamate ligase domain AFR_10020 PF08478 POTRA domain, FtsQ-type AFR_10020 PF03799 Cell division protein FtsQ AFR_10025 PF00091 Tubulin/FtsZ family, GTPase domain AFR_10025 PF12327 FtsZ family, C-terminal domain AFR_10030 PF01168 Alanine racemase, N-terminal domain AFR_10035 PF04472 Cell division protein SepF AFR_10045 PF05103 DivIVA protein AFR_10060 PF02080 TrkA-C domain AFR_10060 PF00999 Sodium/hydrogen exchanger family AFR_10060 PF03471 Transporter associated domain AFR_10070 PF01252 Signal peptidase (SPase) II AFR_10075 PF00849 RNA pseudouridylate synthase AFR_10090 PF02811 PHP domain AFR_10090 PF07733 Bacterial DNA polymerase III alpha NTPase domain AFR_10090 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AFR_10090 PF14579 Helix-hairpin-helix motif AFR_10105 PF00815 Histidinol dehydrogenase AFR_10110 PF00155 Aminotransferase class I and II AFR_10115 PF00475 Imidazoleglycerol-phosphate dehydratase AFR_10125 PF00117 Glutamine amidotransferase class-I AFR_10135 PF00977 Histidine biosynthesis protein AFR_10145 PF03466 LysR substrate binding domain AFR_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_10150 PF00892 EamA-like transporter family AFR_10155 PF00977 Histidine biosynthesis protein AFR_10170 PF00155 Aminotransferase class I and II AFR_10175 PF01522 Polysaccharide deacetylase AFR_10175 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain AFR_10190 PF04542 Sigma-70 region 2 AFR_10190 PF12680 SnoaL-like domain AFR_10190 PF08281 Sigma-70, region 4 AFR_10195 PF00501 AMP-binding enzyme AFR_10200 PF00082 Subtilase family AFR_10200 PF05922 Peptidase inhibitor I9 AFR_10210 PF01209 ubiE/COQ5 methyltransferase family AFR_10215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_10215 PF00512 His Kinase A (phospho-acceptor) domain AFR_10215 PF00672 HAMP domain AFR_10220 PF00072 Response regulator receiver domain AFR_10220 PF00486 Transcriptional regulatory protein, C terminal AFR_10230 PF00155 Aminotransferase class I and II AFR_10230 PF00392 Bacterial regulatory proteins, gntR family AFR_10245 PF00664 ABC transporter transmembrane region AFR_10245 PF00005 ABC transporter AFR_10250 PF00005 ABC transporter AFR_10250 PF00664 ABC transporter transmembrane region AFR_10255 PF00163 Ribosomal protein S4/S9 N-terminal domain AFR_10255 PF01479 S4 domain AFR_10265 PF00440 Bacterial regulatory proteins, tetR family AFR_10275 PF00005 ABC transporter AFR_10285 PF01502 Phosphoribosyl-AMP cyclohydrolase AFR_10290 PF04715 Anthranilate synthase component I, N terminal region AFR_10290 PF00425 chorismate binding enzyme AFR_10305 PF00218 Indole-3-glycerol phosphate synthase AFR_10310 PF00291 Pyridoxal-phosphate dependent enzyme AFR_10315 PF00290 Tryptophan synthase alpha chain AFR_10320 PF01790 Prolipoprotein diacylglyceryl transferase AFR_10325 PF01494 FAD binding domain AFR_10335 PF04898 Glutamate synthase central domain AFR_10335 PF00310 Glutamine amidotransferases class-II AFR_10335 PF01493 GXGXG motif AFR_10335 PF01645 Conserved region in glutamate synthase AFR_10340 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_10340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFR_10365 PF02887 Pyruvate kinase, alpha/beta domain AFR_10365 PF00224 Pyruvate kinase, barrel domain AFR_10385 PF00072 Response regulator receiver domain AFR_10385 PF03861 ANTAR domain AFR_10395 PF02653 Branched-chain amino acid transport system / permease component AFR_10400 PF11862 Domain of unknown function (DUF3382) AFR_10400 PF02653 Branched-chain amino acid transport system / permease component AFR_10405 PF00005 ABC transporter AFR_10405 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFR_10410 PF00005 ABC transporter AFR_10415 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_10420 PF00528 Binding-protein-dependent transport system inner membrane component AFR_10425 PF00005 ABC transporter AFR_10430 PF00476 DNA polymerase family A AFR_10430 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFR_10430 PF01367 5'-3' exonuclease, C-terminal SAM fold AFR_10450 PF01209 ubiE/COQ5 methyltransferase family AFR_10455 PF00575 S1 RNA binding domain AFR_10460 PF01121 Dephospho-CoA kinase AFR_10460 PF04229 GrpB protein AFR_10465 PF02151 UvrB/uvrC motif AFR_10465 PF00271 Helicase conserved C-terminal domain AFR_10465 PF17757 UvrB interaction domain AFR_10465 PF12344 Ultra-violet resistance protein B AFR_10465 PF04851 Type III restriction enzyme, res subunit AFR_10480 PF03992 Antibiotic biosynthesis monooxygenase AFR_10485 PF03741 Integral membrane protein TerC family AFR_10500 PF00298 Ribosomal protein L11, RNA binding domain AFR_10500 PF03946 Ribosomal protein L11, N-terminal domain AFR_10505 PF00574 Clp protease AFR_10510 PF00857 Isochorismatase family AFR_10515 PF00753 Metallo-beta-lactamase superfamily AFR_10525 PF03193 RsgA GTPase AFR_10535 PF00005 ABC transporter AFR_10535 PF17760 UvrA interaction domain AFR_10535 PF17755 UvrA DNA-binding domain AFR_10545 PF08459 UvrC Helix-hairpin-helix N-terminal AFR_10545 PF01541 GIY-YIG catalytic domain AFR_10545 PF02151 UvrB/uvrC motif AFR_10550 PF03668 P-loop ATPase protein family AFR_10555 PF01933 Uncharacterised protein family UPF0052 AFR_10560 PF10298 WhiA N-terminal LAGLIDADG-like domain AFR_10560 PF14527 WhiA LAGLIDADG-like domain AFR_10560 PF02650 WhiA C-terminal HTH domain AFR_10565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_10565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFR_10570 PF00162 Phosphoglycerate kinase AFR_10575 PF00121 Triosephosphate isomerase AFR_10580 PF03840 Preprotein translocase SecG subunit AFR_10590 PF00583 Acetyltransferase (GNAT) family AFR_10600 PF08281 Sigma-70, region 4 AFR_10600 PF04542 Sigma-70 region 2 AFR_10610 PF01313 Bacterial export proteins, family 3 AFR_10615 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFR_10625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFR_10625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFR_10635 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFR_10640 PF00456 Transketolase, thiamine diphosphate binding domain AFR_10640 PF02780 Transketolase, C-terminal domain AFR_10640 PF02779 Transketolase, pyrimidine binding domain AFR_10645 PF01040 UbiA prenyltransferase family AFR_10655 PF02628 Cytochrome oxidase assembly protein AFR_10665 PF01458 Uncharacterized protein family (UPF0051) AFR_10670 PF01458 Uncharacterized protein family (UPF0051) AFR_10675 PF00355 Rieske [2Fe-2S] domain AFR_10680 PF00005 ABC transporter AFR_10685 PF00266 Aminotransferase class-V AFR_10690 PF01592 NifU-like N terminal domain AFR_10695 PF01883 Iron-sulfur cluster assembly protein AFR_10705 PF00107 Zinc-binding dehydrogenase AFR_10705 PF08240 Alcohol dehydrogenase GroES-like domain AFR_10710 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_10715 PF08450 SMP-30/Gluconolactonase/LRE-like region AFR_10720 PF09339 IclR helix-turn-helix domain AFR_10720 PF01614 Bacterial transcriptional regulator AFR_10725 PF00920 Dehydratase family AFR_10735 PF00300 Histidine phosphatase superfamily (branch 1) AFR_10775 PF04228 Putative neutral zinc metallopeptidase AFR_10780 PF00005 ABC transporter AFR_10780 PF16326 ABC transporter C-terminal domain AFR_10780 PF12848 ABC transporter AFR_10790 PF00378 Enoyl-CoA hydratase/isomerase AFR_10795 PF00005 ABC transporter AFR_10795 PF00664 ABC transporter transmembrane region AFR_10810 PF13302 Acetyltransferase (GNAT) domain AFR_10820 PF00722 Glycosyl hydrolases family 16 AFR_10840 PF03167 Uracil DNA glycosylase superfamily AFR_10845 PF08245 Mur ligase middle domain AFR_10845 PF02875 Mur ligase family, glutamate ligase domain AFR_10845 PF01225 Mur ligase family, catalytic domain AFR_10885 PF05114 Protein of unknown function (DUF692) AFR_10895 PF00440 Bacterial regulatory proteins, tetR family AFR_10910 PF10944 Protein of unknown function (DUF2630) AFR_10915 PF03951 Glutamine synthetase, beta-Grasp domain AFR_10915 PF00120 Glutamine synthetase, catalytic domain AFR_10925 PF00486 Transcriptional regulatory protein, C terminal AFR_10930 PF00694 Aconitase C-terminal domain AFR_10930 PF00330 Aconitase family (aconitate hydratase) AFR_10940 PF11852 Domain of unknown function (DUF3372) AFR_10940 PF03714 Bacterial pullanase-associated domain AFR_10940 PF17967 Pullulanase N2 domain AFR_10940 PF18494 Pullulanase Ins domain AFR_10940 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_10960 PF00440 Bacterial regulatory proteins, tetR family AFR_10965 PF01494 FAD binding domain AFR_10970 PF05195 Aminopeptidase P, N-terminal domain AFR_10970 PF00557 Metallopeptidase family M24 AFR_11005 PF07726 ATPase family associated with various cellular activities (AAA) AFR_11005 PF17863 AAA lid domain AFR_11010 PF01882 Protein of unknown function DUF58 AFR_11015 PF13519 von Willebrand factor type A domain AFR_11015 PF07584 Aerotolerance regulator N-terminal AFR_11030 PF00196 Bacterial regulatory proteins, luxR family AFR_11030 PF00072 Response regulator receiver domain AFR_11035 PF07730 Histidine kinase AFR_11060 PF13344 Haloacid dehalogenase-like hydrolase AFR_11065 PF12697 Alpha/beta hydrolase family AFR_11075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_11075 PF00672 HAMP domain AFR_11085 PF00106 short chain dehydrogenase AFR_11090 PF00293 NUDIX domain AFR_11090 PF09297 NADH pyrophosphatase zinc ribbon domain AFR_11115 PF00144 Beta-lactamase AFR_11125 PF01145 SPFH domain / Band 7 family AFR_11140 PF00588 SpoU rRNA Methylase family AFR_11145 PF13302 Acetyltransferase (GNAT) domain AFR_11150 PF00155 Aminotransferase class I and II AFR_11160 PF00175 Oxidoreductase NAD-binding domain AFR_11160 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_11160 PF00970 Oxidoreductase FAD-binding domain AFR_11175 PF08245 Mur ligase middle domain AFR_11180 PF01418 Helix-turn-helix domain, rpiR family AFR_11180 PF01380 SIS domain AFR_11185 PF01547 Bacterial extracellular solute-binding protein AFR_11190 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11195 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11205 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11210 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11220 PF07690 Major Facilitator Superfamily AFR_11235 PF00476 DNA polymerase family A AFR_11235 PF01367 5'-3' exonuclease, C-terminal SAM fold AFR_11235 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFR_11235 PF01612 3'-5' exonuclease AFR_11245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_11245 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_11245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_11265 PF03259 Roadblock/LC7 domain AFR_11270 PF00512 His Kinase A (phospho-acceptor) domain AFR_11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_11275 PF00291 Pyridoxal-phosphate dependent enzyme AFR_11300 PF07730 Histidine kinase AFR_11305 PF00072 Response regulator receiver domain AFR_11305 PF00196 Bacterial regulatory proteins, luxR family AFR_11330 PF13344 Haloacid dehalogenase-like hydrolase AFR_11330 PF00293 NUDIX domain AFR_11335 PF01047 MarR family AFR_11365 PF00296 Luciferase-like monooxygenase AFR_11375 PF00459 Inositol monophosphatase family AFR_11395 PF01547 Bacterial extracellular solute-binding protein AFR_11400 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11405 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11410 PF00005 ABC transporter AFR_11410 PF17912 MalK OB fold domain AFR_11440 PF00248 Aldo/keto reductase family AFR_11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_11445 PF00512 His Kinase A (phospho-acceptor) domain AFR_11445 PF00672 HAMP domain AFR_11450 PF00072 Response regulator receiver domain AFR_11450 PF00486 Transcriptional regulatory protein, C terminal AFR_11460 PF00425 chorismate binding enzyme AFR_11460 PF00117 Glutamine amidotransferase class-I AFR_11475 PF00072 Response regulator receiver domain AFR_11475 PF00486 Transcriptional regulatory protein, C terminal AFR_11480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_11480 PF00072 Response regulator receiver domain AFR_11480 PF00512 His Kinase A (phospho-acceptor) domain AFR_11480 PF08448 PAS fold AFR_11480 PF13426 PAS domain AFR_11490 PF00356 Bacterial regulatory proteins, lacI family AFR_11495 PF00128 Alpha amylase, catalytic domain AFR_11515 PF01638 HxlR-like helix-turn-helix AFR_11520 PF00248 Aldo/keto reductase family AFR_11530 PF04264 YceI-like domain AFR_11535 PF00005 ABC transporter AFR_11535 PF12704 MacB-like periplasmic core domain AFR_11535 PF02687 FtsX-like permease family AFR_11540 PF02687 FtsX-like permease family AFR_11540 PF00005 ABC transporter AFR_11540 PF12704 MacB-like periplasmic core domain AFR_11550 PF00155 Aminotransferase class I and II AFR_11565 PF01590 GAF domain AFR_11565 PF00360 Phytochrome region AFR_11565 PF08446 PAS fold AFR_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_11565 PF00512 His Kinase A (phospho-acceptor) domain AFR_11570 PF00486 Transcriptional regulatory protein, C terminal AFR_11570 PF00072 Response regulator receiver domain AFR_11580 PF00535 Glycosyl transferase family 2 AFR_11590 PF00931 NB-ARC domain AFR_11590 PF00486 Transcriptional regulatory protein, C terminal AFR_11590 PF03704 Bacterial transcriptional activator domain AFR_11595 PF07228 Stage II sporulation protein E (SpoIIE) AFR_11595 PF00672 HAMP domain AFR_11605 PF00072 Response regulator receiver domain AFR_11605 PF00196 Bacterial regulatory proteins, luxR family AFR_11615 PF13439 Glycosyltransferase Family 4 AFR_11615 PF00534 Glycosyl transferases group 1 AFR_11620 PF02719 Polysaccharide biosynthesis protein AFR_11625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_11625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_11625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_11630 PF02397 Bacterial sugar transferase AFR_11640 PF03795 YCII-related domain AFR_11660 PF03466 LysR substrate binding domain AFR_11660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_11670 PF00561 alpha/beta hydrolase fold AFR_11680 PF01494 FAD binding domain AFR_11705 PF02706 Chain length determinant protein AFR_11705 PF13807 G-rich domain on putative tyrosine kinase AFR_11705 PF13614 AAA domain AFR_11715 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFR_11770 PF01569 PAP2 superfamily AFR_11800 PF00583 Acetyltransferase (GNAT) family AFR_11800 PF01047 MarR family AFR_11810 PF08240 Alcohol dehydrogenase GroES-like domain AFR_11810 PF00107 Zinc-binding dehydrogenase AFR_11835 PF07690 Major Facilitator Superfamily AFR_11840 PF00570 HRDC domain AFR_11840 PF00270 DEAD/DEAH box helicase AFR_11840 PF09382 RQC domain AFR_11840 PF16124 RecQ zinc-binding AFR_11840 PF00271 Helicase conserved C-terminal domain AFR_11845 PF00893 Small Multidrug Resistance protein AFR_11855 PF13191 AAA ATPase domain AFR_11855 PF00211 Adenylate and Guanylate cyclase catalytic domain AFR_11885 PF00557 Metallopeptidase family M24 AFR_11895 PF06441 Epoxide hydrolase N terminus AFR_11910 PF00990 Diguanylate cyclase, GGDEF domain AFR_11910 PF00563 EAL domain AFR_11910 PF03707 Bacterial signalling protein N terminal repeat AFR_11920 PF03466 LysR substrate binding domain AFR_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_11935 PF00196 Bacterial regulatory proteins, luxR family AFR_11945 PF00561 alpha/beta hydrolase fold AFR_11955 PF00486 Transcriptional regulatory protein, C terminal AFR_11955 PF00931 NB-ARC domain AFR_11955 PF03704 Bacterial transcriptional activator domain AFR_11965 PF08361 MAATS-type transcriptional repressor, C-terminal region AFR_11965 PF00440 Bacterial regulatory proteins, tetR family AFR_12005 PF06441 Epoxide hydrolase N terminus AFR_12020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_12020 PF00672 HAMP domain AFR_12025 PF08447 PAS fold AFR_12025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_12035 PF01022 Bacterial regulatory protein, arsR family AFR_12050 PF17863 AAA lid domain AFR_12050 PF07726 ATPase family associated with various cellular activities (AAA) AFR_12125 PF00313 'Cold-shock' DNA-binding domain AFR_12170 PF13340 Putative transposase of IS4/5 family (DUF4096) AFR_12175 PF01609 Transposase DDE domain AFR_12190 PF13340 Putative transposase of IS4/5 family (DUF4096) AFR_12195 PF01609 Transposase DDE domain AFR_12205 PF00106 short chain dehydrogenase AFR_12245 PF00248 Aldo/keto reductase family AFR_12270 PF00561 alpha/beta hydrolase fold AFR_12270 PF08386 TAP-like protein AFR_12280 PF00072 Response regulator receiver domain AFR_12280 PF00196 Bacterial regulatory proteins, luxR family AFR_12295 PF12146 Serine aminopeptidase, S33 AFR_12310 PF02517 CPBP intramembrane metalloprotease AFR_12325 PF13426 PAS domain AFR_12325 PF00196 Bacterial regulatory proteins, luxR family AFR_12355 PF06441 Epoxide hydrolase N terminus AFR_12360 PF00196 Bacterial regulatory proteins, luxR family AFR_12360 PF00072 Response regulator receiver domain AFR_12370 PF02683 Cytochrome C biogenesis protein transmembrane region AFR_12375 PF00578 AhpC/TSA family AFR_12380 PF00141 Peroxidase AFR_12385 PF00230 Major intrinsic protein AFR_12395 PF04542 Sigma-70 region 2 AFR_12395 PF08281 Sigma-70, region 4 AFR_12400 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_12405 PF00144 Beta-lactamase AFR_12410 PF13193 AMP-binding enzyme C-terminal domain AFR_12410 PF00668 Condensation domain AFR_12410 PF00550 Phosphopantetheine attachment site AFR_12410 PF00501 AMP-binding enzyme AFR_12415 PF00501 AMP-binding enzyme AFR_12415 PF13193 AMP-binding enzyme C-terminal domain AFR_12415 PF00550 Phosphopantetheine attachment site AFR_12415 PF00668 Condensation domain AFR_12435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_12435 PF07730 Histidine kinase AFR_12435 PF05384 Sensor protein DegS AFR_12440 PF00196 Bacterial regulatory proteins, luxR family AFR_12440 PF00072 Response regulator receiver domain AFR_12460 PF00350 Dynamin family AFR_12465 PF00350 Dynamin family AFR_12480 PF00072 Response regulator receiver domain AFR_12480 PF00196 Bacterial regulatory proteins, luxR family AFR_12515 PF00672 HAMP domain AFR_12515 PF18698 Histidine kinase sensor domain AFR_12515 PF00989 PAS fold AFR_12515 PF00512 His Kinase A (phospho-acceptor) domain AFR_12515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_12540 PF00072 Response regulator receiver domain AFR_12540 PF00196 Bacterial regulatory proteins, luxR family AFR_12555 PF02983 Alpha-lytic protease prodomain AFR_12565 PF00005 ABC transporter AFR_12575 PF00171 Aldehyde dehydrogenase family AFR_12585 PF01614 Bacterial transcriptional regulator AFR_12585 PF09339 IclR helix-turn-helix domain AFR_12595 PF00528 Binding-protein-dependent transport system inner membrane component AFR_12610 PF08240 Alcohol dehydrogenase GroES-like domain AFR_12610 PF00107 Zinc-binding dehydrogenase AFR_12615 PF08659 KR domain AFR_12615 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_12615 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_12615 PF16197 Ketoacyl-synthetase C-terminal extension AFR_12615 PF00550 Phosphopantetheine attachment site AFR_12615 PF08240 Alcohol dehydrogenase GroES-like domain AFR_12615 PF00698 Acyl transferase domain AFR_12615 PF14765 Polyketide synthase dehydratase AFR_12615 PF00107 Zinc-binding dehydrogenase AFR_12625 PF01790 Prolipoprotein diacylglyceryl transferase AFR_12630 PF00970 Oxidoreductase FAD-binding domain AFR_12630 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_12630 PF00175 Oxidoreductase NAD-binding domain AFR_12680 PF04072 Leucine carboxyl methyltransferase AFR_12695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_12695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_12705 PF07729 FCD domain AFR_12705 PF00392 Bacterial regulatory proteins, gntR family AFR_12710 PF00180 Isocitrate/isopropylmalate dehydrogenase AFR_12720 PF08240 Alcohol dehydrogenase GroES-like domain AFR_12720 PF00107 Zinc-binding dehydrogenase AFR_12735 PF07282 Putative transposase DNA-binding domain AFR_12735 PF01385 Probable transposase AFR_12735 PF12323 Helix-turn-helix domain AFR_12760 PF00440 Bacterial regulatory proteins, tetR family AFR_12760 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_12775 PF04321 RmlD substrate binding domain AFR_12780 PF08281 Sigma-70, region 4 AFR_12780 PF04542 Sigma-70 region 2 AFR_12790 PF00005 ABC transporter AFR_12825 PF00440 Bacterial regulatory proteins, tetR family AFR_12825 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_12830 PF01494 FAD binding domain AFR_12835 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain AFR_12835 PF04616 Glycosyl hydrolases family 43 AFR_12840 PF07532 Bacterial Ig-like domain (group 4) AFR_12845 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFR_12845 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFR_12845 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFR_12850 PF00004 ATPase family associated with various cellular activities (AAA) AFR_12850 PF17862 AAA+ lid domain AFR_12850 PF01434 Peptidase family M41 AFR_12870 PF17991 Thioredoxin like C-terminal domain AFR_12870 PF02683 Cytochrome C biogenesis protein transmembrane region AFR_12870 PF00578 AhpC/TSA family AFR_12885 PF00440 Bacterial regulatory proteins, tetR family AFR_12885 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_12890 PF08031 Berberine and berberine like AFR_12890 PF01565 FAD binding domain AFR_12895 PF00106 short chain dehydrogenase AFR_12910 PF00403 Heavy-metal-associated domain AFR_12910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_12910 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_12915 PF07690 Major Facilitator Superfamily AFR_12930 PF01817 Chorismate mutase type II AFR_12935 PF04545 Sigma-70, region 4 AFR_12935 PF04542 Sigma-70 region 2 AFR_12940 PF00196 Bacterial regulatory proteins, luxR family AFR_12940 PF00072 Response regulator receiver domain AFR_12945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_12945 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_12945 PF00403 Heavy-metal-associated domain AFR_12955 PF01965 DJ-1/PfpI family AFR_12965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_12965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_12970 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_12970 PF00440 Bacterial regulatory proteins, tetR family AFR_12990 PF00248 Aldo/keto reductase family AFR_12995 PF00440 Bacterial regulatory proteins, tetR family AFR_12995 PF08360 QacR-like protein, C-terminal region AFR_13000 PF07690 Major Facilitator Superfamily AFR_13005 PF00144 Beta-lactamase AFR_13010 PF17925 Tetracyclin repressor-like, C-terminal domain AFR_13010 PF00440 Bacterial regulatory proteins, tetR family AFR_13015 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13015 PF00107 Zinc-binding dehydrogenase AFR_13020 PF01370 NAD dependent epimerase/dehydratase family AFR_13030 PF00106 short chain dehydrogenase AFR_13040 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_13040 PF00440 Bacterial regulatory proteins, tetR family AFR_13045 PF12697 Alpha/beta hydrolase family AFR_13050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_13070 PF02653 Branched-chain amino acid transport system / permease component AFR_13075 PF00005 ABC transporter AFR_13085 PF01968 Hydantoinase/oxoprolinase AFR_13085 PF05378 Hydantoinase/oxoprolinase N-terminal region AFR_13090 PF01494 FAD binding domain AFR_13095 PF00561 alpha/beta hydrolase fold AFR_13105 PF05199 GMC oxidoreductase AFR_13105 PF00732 GMC oxidoreductase AFR_13110 PF07690 Major Facilitator Superfamily AFR_13110 PF00083 Sugar (and other) transporter AFR_13130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFR_13130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFR_13130 PF00378 Enoyl-CoA hydratase/isomerase AFR_13135 PF00376 MerR family regulatory protein AFR_13135 PF09278 MerR, DNA binding AFR_13150 PF00072 Response regulator receiver domain AFR_13150 PF00486 Transcriptional regulatory protein, C terminal AFR_13155 PF00672 HAMP domain AFR_13155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_13155 PF00512 His Kinase A (phospho-acceptor) domain AFR_13170 PF00106 short chain dehydrogenase AFR_13180 PF00356 Bacterial regulatory proteins, lacI family AFR_13185 PF07859 alpha/beta hydrolase fold AFR_13195 PF00528 Binding-protein-dependent transport system inner membrane component AFR_13200 PF00528 Binding-protein-dependent transport system inner membrane component AFR_13215 PF09277 Erythronolide synthase, docking AFR_13215 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_13215 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_13215 PF08990 Erythronolide synthase docking AFR_13215 PF08659 KR domain AFR_13215 PF00698 Acyl transferase domain AFR_13215 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13215 PF16197 Ketoacyl-synthetase C-terminal extension AFR_13215 PF14765 Polyketide synthase dehydratase AFR_13215 PF00550 Phosphopantetheine attachment site AFR_13230 PF01494 FAD binding domain AFR_13235 PF12729 Four helix bundle sensory module for signal transduction AFR_13235 PF00672 HAMP domain AFR_13235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_13265 PF01757 Acyltransferase family AFR_13270 PF04542 Sigma-70 region 2 AFR_13270 PF04545 Sigma-70, region 4 AFR_13280 PF00089 Trypsin AFR_13285 PF00248 Aldo/keto reductase family AFR_13300 PF00296 Luciferase-like monooxygenase AFR_13320 PF00486 Transcriptional regulatory protein, C terminal AFR_13320 PF00072 Response regulator receiver domain AFR_13325 PF00512 His Kinase A (phospho-acceptor) domain AFR_13325 PF00672 HAMP domain AFR_13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_13335 PF00005 ABC transporter AFR_13335 PF02687 FtsX-like permease family AFR_13335 PF12704 MacB-like periplasmic core domain AFR_13340 PF00106 short chain dehydrogenase AFR_13355 PF16657 Maltogenic Amylase, C-terminal domain AFR_13355 PF00128 Alpha amylase, catalytic domain AFR_13365 PF00106 short chain dehydrogenase AFR_13370 PF03466 LysR substrate binding domain AFR_13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_13375 PF00440 Bacterial regulatory proteins, tetR family AFR_13385 PF07690 Major Facilitator Superfamily AFR_13420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_13420 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_13420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_13445 PF03259 Roadblock/LC7 domain AFR_13455 PF00155 Aminotransferase class I and II AFR_13455 PF00392 Bacterial regulatory proteins, gntR family AFR_13465 PF02190 ATP-dependent protease La (LON) substrate-binding domain AFR_13465 PF05362 Lon protease (S16) C-terminal proteolytic domain AFR_13465 PF00004 ATPase family associated with various cellular activities (AAA) AFR_13475 PF00248 Aldo/keto reductase family AFR_13480 PF00248 Aldo/keto reductase family AFR_13485 PF00106 short chain dehydrogenase AFR_13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_13495 PF03466 LysR substrate binding domain AFR_13500 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AFR_13505 PF07690 Major Facilitator Superfamily AFR_13540 PF00106 short chain dehydrogenase AFR_13570 PF00478 IMP dehydrogenase / GMP reductase domain AFR_13570 PF00571 CBS domain AFR_13585 PF00440 Bacterial regulatory proteins, tetR family AFR_13595 PF00440 Bacterial regulatory proteins, tetR family AFR_13640 PF00999 Sodium/hydrogen exchanger family AFR_13655 PF00296 Luciferase-like monooxygenase AFR_13665 PF00440 Bacterial regulatory proteins, tetR family AFR_13665 PF08361 MAATS-type transcriptional repressor, C-terminal region AFR_13675 PF03364 Polyketide cyclase / dehydrase and lipid transport AFR_13680 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13680 PF00107 Zinc-binding dehydrogenase AFR_13680 PF13823 Alcohol dehydrogenase GroES-associated AFR_13685 PF12833 Helix-turn-helix domain AFR_13685 PF14525 AraC-binding-like domain AFR_13700 PF01554 MatE AFR_13735 PF00196 Bacterial regulatory proteins, luxR family AFR_13735 PF00072 Response regulator receiver domain AFR_13740 PF07730 Histidine kinase AFR_13750 PF00999 Sodium/hydrogen exchanger family AFR_13755 PF14765 Polyketide synthase dehydratase AFR_13755 PF00698 Acyl transferase domain AFR_13755 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13755 PF16197 Ketoacyl-synthetase C-terminal extension AFR_13755 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_13755 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_13755 PF08659 KR domain AFR_13755 PF00550 Phosphopantetheine attachment site AFR_13760 PF00376 MerR family regulatory protein AFR_13760 PF09278 MerR, DNA binding AFR_13765 PF07238 PilZ domain AFR_13765 PF03552 Cellulose synthase AFR_13765 PF00535 Glycosyl transferase family 2 AFR_13785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_13785 PF06827 Zinc finger found in FPG and IleRS AFR_13785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_13795 PF00498 FHA domain AFR_13795 PF00486 Transcriptional regulatory protein, C terminal AFR_13795 PF03704 Bacterial transcriptional activator domain AFR_13810 PF03814 Potassium-transporting ATPase A subunit AFR_13820 PF02669 K+-transporting ATPase, c chain AFR_13825 PF02702 Osmosensitive K+ channel His kinase sensor domain AFR_13825 PF13493 Domain of unknown function (DUF4118) AFR_13825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_13825 PF00582 Universal stress protein family AFR_13825 PF00512 His Kinase A (phospho-acceptor) domain AFR_13870 PF13649 Methyltransferase domain AFR_13875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_13875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_13880 PF01266 FAD dependent oxidoreductase AFR_13885 PF03781 Sulfatase-modifying factor enzyme 1 AFR_13885 PF12867 DinB superfamily AFR_13920 PF03176 MMPL family AFR_13935 PF01494 FAD binding domain AFR_13940 PF00990 Diguanylate cyclase, GGDEF domain AFR_13940 PF00072 Response regulator receiver domain AFR_13945 PF05922 Peptidase inhibitor I9 AFR_13945 PF00082 Subtilase family AFR_13950 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_13950 PF00440 Bacterial regulatory proteins, tetR family AFR_13960 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13960 PF00107 Zinc-binding dehydrogenase AFR_13970 PF00106 short chain dehydrogenase AFR_13975 PF00188 Cysteine-rich secretory protein family AFR_13980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_13985 PF00528 Binding-protein-dependent transport system inner membrane component AFR_13990 PF00528 Binding-protein-dependent transport system inner membrane component AFR_13990 PF12911 N-terminal TM domain of oligopeptide transport permease C AFR_13995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_13995 PF00005 ABC transporter AFR_14000 PF09383 NIL domain AFR_14000 PF00005 ABC transporter AFR_14010 PF08281 Sigma-70, region 4 AFR_14010 PF04542 Sigma-70 region 2 AFR_14025 PF08281 Sigma-70, region 4 AFR_14025 PF04542 Sigma-70 region 2 AFR_14030 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AFR_14030 PF05425 Copper resistance protein D AFR_14045 PF04261 Dyp-type peroxidase family AFR_14055 PF07690 Major Facilitator Superfamily AFR_14065 PF00072 Response regulator receiver domain AFR_14065 PF00196 Bacterial regulatory proteins, luxR family AFR_14105 PF08495 FIST N domain AFR_14105 PF00990 Diguanylate cyclase, GGDEF domain AFR_14105 PF10442 FIST C domain AFR_14105 PF00563 EAL domain AFR_14120 PF10397 Adenylosuccinate lyase C-terminus AFR_14120 PF00206 Lyase AFR_14135 PF07228 Stage II sporulation protein E (SpoIIE) AFR_14135 PF00672 HAMP domain AFR_14150 PF00392 Bacterial regulatory proteins, gntR family AFR_14150 PF07729 FCD domain AFR_14160 PF03458 UPF0126 domain AFR_14175 PF01926 50S ribosome-binding GTPase AFR_14175 PF13167 GTP-binding GTPase N-terminal AFR_14175 PF16360 GTP-binding GTPase Middle Region AFR_14180 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_14180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_14180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_14185 PF03707 Bacterial signalling protein N terminal repeat AFR_14185 PF00563 EAL domain AFR_14185 PF00990 Diguanylate cyclase, GGDEF domain AFR_14200 PF01042 Endoribonuclease L-PSP AFR_14205 PF00561 alpha/beta hydrolase fold AFR_14220 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14220 PF00107 Zinc-binding dehydrogenase AFR_14245 PF12323 Helix-turn-helix domain AFR_14245 PF07282 Putative transposase DNA-binding domain AFR_14245 PF01385 Probable transposase AFR_14270 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFR_14275 PF03176 MMPL family AFR_14280 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14280 PF00107 Zinc-binding dehydrogenase AFR_14285 PF03773 Predicted permease AFR_14290 PF06965 Na+/H+ antiporter 1 AFR_14300 PF13732 Domain of unknown function (DUF4162) AFR_14300 PF00005 ABC transporter AFR_14305 PF00144 Beta-lactamase AFR_14325 PF04314 Copper chaperone PCu(A)C AFR_14335 PF02780 Transketolase, C-terminal domain AFR_14335 PF02779 Transketolase, pyrimidine binding domain AFR_14335 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFR_14345 PF07690 Major Facilitator Superfamily AFR_14350 PF01547 Bacterial extracellular solute-binding protein AFR_14355 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14385 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_14385 PF00440 Bacterial regulatory proteins, tetR family AFR_14390 PF01370 NAD dependent epimerase/dehydratase family AFR_14395 PF00440 Bacterial regulatory proteins, tetR family AFR_14420 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_14420 PF01799 [2Fe-2S] binding domain AFR_14430 PF00232 Glycosyl hydrolase family 1 AFR_14460 PF03466 LysR substrate binding domain AFR_14460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_14470 PF04542 Sigma-70 region 2 AFR_14470 PF08281 Sigma-70, region 4 AFR_14470 PF12680 SnoaL-like domain AFR_14510 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14510 PF13823 Alcohol dehydrogenase GroES-associated AFR_14510 PF00107 Zinc-binding dehydrogenase AFR_14535 PF00313 'Cold-shock' DNA-binding domain AFR_14545 PF12833 Helix-turn-helix domain AFR_14545 PF01965 DJ-1/PfpI family AFR_14550 PF00196 Bacterial regulatory proteins, luxR family AFR_14565 PF12697 Alpha/beta hydrolase family AFR_14570 PF02525 Flavodoxin-like fold AFR_14580 PF02311 AraC-like ligand binding domain AFR_14580 PF12833 Helix-turn-helix domain AFR_14585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_14585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_14590 PF00005 ABC transporter AFR_14590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_14595 PF00005 ABC transporter AFR_14595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_14610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_14615 PF00501 AMP-binding enzyme AFR_14630 PF02417 Chromate transporter AFR_14665 PF01494 FAD binding domain AFR_14680 PF00440 Bacterial regulatory proteins, tetR family AFR_14685 PF06441 Epoxide hydrolase N terminus AFR_14705 PF00440 Bacterial regulatory proteins, tetR family AFR_14710 PF00394 Multicopper oxidase AFR_14710 PF07731 Multicopper oxidase AFR_14710 PF07732 Multicopper oxidase AFR_14715 PF00550 Phosphopantetheine attachment site AFR_14715 PF08659 KR domain AFR_14715 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_14715 PF16197 Ketoacyl-synthetase C-terminal extension AFR_14715 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14715 PF00698 Acyl transferase domain AFR_14715 PF14765 Polyketide synthase dehydratase AFR_14715 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_14715 PF08990 Erythronolide synthase docking AFR_14740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_14760 PF01022 Bacterial regulatory protein, arsR family AFR_14765 PF00457 Glycosyl hydrolases family 11 AFR_14770 PF03664 Glycosyl hydrolase family 62 AFR_14770 PF00652 Ricin-type beta-trefoil lectin domain AFR_14775 PF01547 Bacterial extracellular solute-binding protein AFR_14780 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14785 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14790 PF03176 MMPL family AFR_14805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_14805 PF07730 Histidine kinase AFR_14810 PF00072 Response regulator receiver domain AFR_14810 PF00196 Bacterial regulatory proteins, luxR family AFR_14815 PF01752 Collagenase AFR_14815 PF08453 Peptidase family M9 N-terminal AFR_14825 PF00440 Bacterial regulatory proteins, tetR family AFR_14825 PF17754 MftR C-terminal domain AFR_14840 PF00069 Protein kinase domain AFR_14840 PF00400 WD domain, G-beta repeat AFR_14845 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_14845 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14845 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_14845 PF00698 Acyl transferase domain AFR_14845 PF08990 Erythronolide synthase docking AFR_14845 PF16197 Ketoacyl-synthetase C-terminal extension AFR_14845 PF08659 KR domain AFR_14845 PF09277 Erythronolide synthase, docking AFR_14845 PF14765 Polyketide synthase dehydratase AFR_14845 PF00550 Phosphopantetheine attachment site AFR_14860 PF12697 Alpha/beta hydrolase family AFR_14865 PF00486 Transcriptional regulatory protein, C terminal AFR_14865 PF03704 Bacterial transcriptional activator domain AFR_14880 PF07859 alpha/beta hydrolase fold AFR_14895 PF00553 Cellulose binding domain AFR_14895 PF00041 Fibronectin type III domain AFR_14895 PF02011 Glycosyl hydrolase family 48 AFR_14900 PF00652 Ricin-type beta-trefoil lectin domain AFR_14900 PF03664 Glycosyl hydrolase family 62 AFR_14905 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_14905 PF00553 Cellulose binding domain AFR_14910 PF00652 Ricin-type beta-trefoil lectin domain AFR_14910 PF00331 Glycosyl hydrolase family 10 AFR_14935 PF00069 Protein kinase domain AFR_14940 PF00480 ROK family AFR_14955 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14960 PF14785 Maltose transport system permease protein MalF P2 domain AFR_14960 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14975 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AFR_14975 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AFR_15025 PF06441 Epoxide hydrolase N terminus AFR_15045 PF00512 His Kinase A (phospho-acceptor) domain AFR_15045 PF00672 HAMP domain AFR_15045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_15050 PF00072 Response regulator receiver domain AFR_15050 PF00486 Transcriptional regulatory protein, C terminal AFR_15055 PF00005 ABC transporter AFR_15085 PF08281 Sigma-70, region 4 AFR_15085 PF04542 Sigma-70 region 2 AFR_15095 PF01156 Inosine-uridine preferring nucleoside hydrolase AFR_15105 PF00248 Aldo/keto reductase family AFR_15110 PF00107 Zinc-binding dehydrogenase AFR_15110 PF08240 Alcohol dehydrogenase GroES-like domain AFR_15120 PF01638 HxlR-like helix-turn-helix AFR_15125 PF17754 MftR C-terminal domain AFR_15125 PF00440 Bacterial regulatory proteins, tetR family AFR_15130 PF00005 ABC transporter AFR_15145 PF03466 LysR substrate binding domain AFR_15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_15165 PF05661 Protein of unknown function (DUF808) AFR_15175 PF01161 Phosphatidylethanolamine-binding protein AFR_15205 PF05506 Domain of unknown function (DUF756) AFR_15205 PF04185 Phosphoesterase family AFR_15225 PF06772 Bacterial low temperature requirement A protein (LtrA) AFR_15235 PF07859 alpha/beta hydrolase fold AFR_15245 PF12833 Helix-turn-helix domain AFR_15245 PF06719 AraC-type transcriptional regulator N-terminus AFR_15265 PF01475 Ferric uptake regulator family AFR_15270 PF00141 Peroxidase AFR_15275 PF00561 alpha/beta hydrolase fold AFR_15280 PF01638 HxlR-like helix-turn-helix AFR_15290 PF02156 Glycosyl hydrolase family 26 AFR_15300 PF00528 Binding-protein-dependent transport system inner membrane component AFR_15305 PF00528 Binding-protein-dependent transport system inner membrane component AFR_15315 PF00356 Bacterial regulatory proteins, lacI family AFR_15320 PF01047 MarR family AFR_15320 PF00480 ROK family AFR_15345 PF00107 Zinc-binding dehydrogenase AFR_15345 PF08240 Alcohol dehydrogenase GroES-like domain AFR_15350 PF13087 AAA domain AFR_15350 PF13086 AAA domain AFR_15350 PF13195 Protein of unknown function (DUF4011) AFR_15355 PF00912 Transglycosylase AFR_15355 PF00905 Penicillin binding protein transpeptidase domain AFR_15370 PF05977 Transmembrane secretion effector AFR_15375 PF00005 ABC transporter AFR_15390 PF00563 EAL domain AFR_15390 PF03707 Bacterial signalling protein N terminal repeat AFR_15390 PF00990 Diguanylate cyclase, GGDEF domain AFR_15400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_15400 PF18029 Glyoxalase-like domain AFR_15415 PF12146 Serine aminopeptidase, S33 AFR_15415 PF13026 Protein of unknown function (DUF3887) AFR_15425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_15425 PF00672 HAMP domain AFR_15425 PF00512 His Kinase A (phospho-acceptor) domain AFR_15430 PF00486 Transcriptional regulatory protein, C terminal AFR_15430 PF00072 Response regulator receiver domain AFR_15450 PF00106 short chain dehydrogenase AFR_15470 PF00440 Bacterial regulatory proteins, tetR family AFR_15480 PF00404 Dockerin type I domain AFR_15480 PF00657 GDSL-like Lipase/Acylhydrolase AFR_15490 PF07971 Glycosyl hydrolase family 92 AFR_15490 PF17678 Glycosyl hydrolase family 92 N-terminal domain AFR_15510 PF00296 Luciferase-like monooxygenase AFR_15525 PF00550 Phosphopantetheine attachment site AFR_15525 PF07993 Male sterility protein AFR_15525 PF00668 Condensation domain AFR_15525 PF13193 AMP-binding enzyme C-terminal domain AFR_15525 PF00501 AMP-binding enzyme AFR_15530 PF11838 ERAP1-like C-terminal domain AFR_15530 PF01433 Peptidase family M1 domain AFR_15550 PF00561 alpha/beta hydrolase fold AFR_15590 PF04616 Glycosyl hydrolases family 43 AFR_15590 PF03422 Carbohydrate binding module (family 6) AFR_15600 PF06445 GyrI-like small molecule binding domain AFR_15600 PF12833 Helix-turn-helix domain AFR_15605 PF00106 short chain dehydrogenase AFR_15610 PF17754 MftR C-terminal domain AFR_15610 PF00440 Bacterial regulatory proteins, tetR family AFR_15655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_15655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_15665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_15665 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_15680 PF00005 ABC transporter AFR_15680 PF08402 TOBE domain AFR_15685 PF00528 Binding-protein-dependent transport system inner membrane component AFR_15705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_15705 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_15705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_15710 PF02627 Carboxymuconolactone decarboxylase family AFR_15715 PF00392 Bacterial regulatory proteins, gntR family AFR_15715 PF07840 FadR C-terminal domain AFR_15720 PF03328 HpcH/HpaI aldolase/citrate lyase family AFR_15730 PF00743 Flavin-binding monooxygenase-like AFR_15735 PF00753 Metallo-beta-lactamase superfamily AFR_15755 PF00171 Aldehyde dehydrogenase family AFR_15765 PF07690 Major Facilitator Superfamily AFR_15775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_15775 PF03466 LysR substrate binding domain AFR_15790 PF13649 Methyltransferase domain AFR_15795 PF00544 Pectate lyase AFR_15800 PF00561 alpha/beta hydrolase fold AFR_15805 PF04231 Endonuclease I AFR_15810 PF00491 Arginase family AFR_15840 PF11638 DnaA N-terminal domain AFR_15840 PF08299 Bacterial dnaA protein helix-turn-helix AFR_15840 PF00308 Bacterial dnaA protein AFR_15845 PF00248 Aldo/keto reductase family AFR_15850 PF17925 Tetracyclin repressor-like, C-terminal domain AFR_15850 PF00440 Bacterial regulatory proteins, tetR family AFR_15855 PF03401 Tripartite tricarboxylate transporter family receptor AFR_15865 PF01970 Tripartite tricarboxylate transporter TctA family AFR_15875 PF00989 PAS fold AFR_15875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_15875 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFR_15875 PF17203 Single cache domain 3 AFR_15880 PF04703 FaeA-like protein AFR_15880 PF00072 Response regulator receiver domain AFR_15885 PF00486 Transcriptional regulatory protein, C terminal AFR_15885 PF03704 Bacterial transcriptional activator domain AFR_15885 PF00931 NB-ARC domain AFR_15890 PF00132 Bacterial transferase hexapeptide (six repeats) AFR_15895 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_15895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_15900 PF01370 NAD dependent epimerase/dehydratase family AFR_15905 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFR_15915 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFR_15940 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_15940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_15945 PF13193 AMP-binding enzyme C-terminal domain AFR_15945 PF00501 AMP-binding enzyme AFR_15970 PF09383 NIL domain AFR_15970 PF00005 ABC transporter AFR_15975 PF00535 Glycosyl transferase family 2 AFR_15995 PF00534 Glycosyl transferases group 1 AFR_15995 PF13439 Glycosyltransferase Family 4 AFR_16015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_16015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_16015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_16020 PF02397 Bacterial sugar transferase AFR_16025 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFR_16030 PF00483 Nucleotidyl transferase AFR_16035 PF16363 GDP-mannose 4,6 dehydratase AFR_16040 PF04321 RmlD substrate binding domain AFR_16045 PF00107 Zinc-binding dehydrogenase AFR_16045 PF08240 Alcohol dehydrogenase GroES-like domain AFR_16065 PF17938 Tetracyclin repressor-like, C-terminal domain AFR_16065 PF00440 Bacterial regulatory proteins, tetR family AFR_16070 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFR_16070 PF08501 Shikimate dehydrogenase substrate binding domain AFR_16085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_16085 PF03466 LysR substrate binding domain AFR_16115 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFR_16115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFR_16120 PF01037 Lrp/AsnC ligand binding domain AFR_16135 PF00291 Pyridoxal-phosphate dependent enzyme AFR_16145 PF00196 Bacterial regulatory proteins, luxR family AFR_16145 PF00072 Response regulator receiver domain AFR_16150 PF07730 Histidine kinase AFR_16155 PF03176 MMPL family AFR_16165 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_16180 PF00069 Protein kinase domain AFR_16180 PF03793 PASTA domain AFR_16205 PF00248 Aldo/keto reductase family AFR_16215 PF13407 Periplasmic binding protein domain AFR_16220 PF00005 ABC transporter AFR_16225 PF02653 Branched-chain amino acid transport system / permease component AFR_16230 PF00480 ROK family AFR_16255 PF00072 Response regulator receiver domain AFR_16255 PF00196 Bacterial regulatory proteins, luxR family AFR_16270 PF01494 FAD binding domain AFR_16280 PF03781 Sulfatase-modifying factor enzyme 1 AFR_16295 PF05762 VWA domain containing CoxE-like protein AFR_16300 PF07728 AAA domain (dynein-related subfamily) AFR_16345 PF03717 Penicillin-binding Protein dimerisation domain AFR_16345 PF03793 PASTA domain AFR_16345 PF00905 Penicillin binding protein transpeptidase domain AFR_16350 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFR_16350 PF00753 Metallo-beta-lactamase superfamily AFR_16355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_16355 PF03466 LysR substrate binding domain AFR_16360 PF00106 short chain dehydrogenase AFR_16365 PF00404 Dockerin type I domain AFR_16365 PF00657 GDSL-like Lipase/Acylhydrolase AFR_16370 PF01040 UbiA prenyltransferase family AFR_16375 PF02733 Dak1 domain AFR_16380 PF02734 DAK2 domain AFR_16385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFR_16385 PF05524 PEP-utilising enzyme, N-terminal AFR_16385 PF00381 PTS HPr component phosphorylation site AFR_16385 PF02896 PEP-utilising enzyme, TIM barrel domain AFR_16385 PF00391 PEP-utilising enzyme, mobile domain AFR_16440 PF13344 Haloacid dehalogenase-like hydrolase AFR_16440 PF00293 NUDIX domain AFR_16445 PF04616 Glycosyl hydrolases family 43 AFR_16445 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain AFR_16460 PF13520 Amino acid permease AFR_16475 PF17932 Tetracyclin repressor-like, C-terminal domain AFR_16475 PF00440 Bacterial regulatory proteins, tetR family AFR_16480 PF07690 Major Facilitator Superfamily AFR_16505 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_16505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_16505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_16515 PF01757 Acyltransferase family AFR_16520 PF00535 Glycosyl transferase family 2 AFR_16520 PF07238 PilZ domain AFR_16520 PF03552 Cellulose synthase AFR_16545 PF00221 Aromatic amino acid lyase AFR_16580 PF00106 short chain dehydrogenase AFR_16585 PF01467 Cytidylyltransferase-like AFR_16585 PF00294 pfkB family carbohydrate kinase AFR_16590 PF13580 SIS domain AFR_16595 PF13439 Glycosyltransferase Family 4 AFR_16595 PF00534 Glycosyl transferases group 1 AFR_16615 PF02543 Carbamoyltransferase N-terminus AFR_16615 PF16861 Carbamoyltransferase C-terminus AFR_16620 PF00171 Aldehyde dehydrogenase family AFR_16635 PF04542 Sigma-70 region 2 AFR_16635 PF04545 Sigma-70, region 4 AFR_16635 PF04539 Sigma-70 region 3 AFR_16645 PF00005 ABC transporter AFR_16650 PF01497 Periplasmic binding protein AFR_16655 PF01032 FecCD transport family AFR_16665 PF00285 Citrate synthase, C-terminal domain AFR_16670 PF00285 Citrate synthase, C-terminal domain AFR_16680 PF00067 Cytochrome P450 AFR_16690 PF01594 AI-2E family transporter AFR_16710 PF13088 BNR repeat-like domain AFR_16710 PF00754 F5/8 type C domain AFR_16710 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AFR_16715 PF00391 PEP-utilising enzyme, mobile domain AFR_16715 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFR_16725 PF02687 FtsX-like permease family AFR_16725 PF12704 MacB-like periplasmic core domain AFR_16730 PF12704 MacB-like periplasmic core domain AFR_16730 PF02687 FtsX-like permease family AFR_16730 PF00005 ABC transporter AFR_16755 PF04542 Sigma-70 region 2 AFR_16755 PF08281 Sigma-70, region 4 AFR_16760 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_16775 PF02547 Queuosine biosynthesis protein AFR_16785 PF07730 Histidine kinase AFR_16785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_16785 PF00672 HAMP domain AFR_16790 PF00072 Response regulator receiver domain AFR_16790 PF00196 Bacterial regulatory proteins, luxR family AFR_16800 PF01554 MatE AFR_16810 PF05103 DivIVA protein AFR_16815 PF00356 Bacterial regulatory proteins, lacI family AFR_16830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_16830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_16840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_16840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_16845 PF00528 Binding-protein-dependent transport system inner membrane component AFR_16860 PF02614 Glucuronate isomerase AFR_16865 PF08125 Mannitol dehydrogenase C-terminal domain AFR_16865 PF01232 Mannitol dehydrogenase Rossmann domain AFR_16910 PF00171 Aldehyde dehydrogenase family AFR_16915 PF01037 Lrp/AsnC ligand binding domain AFR_16920 PF00676 Dehydrogenase E1 component AFR_16925 PF02779 Transketolase, pyrimidine binding domain AFR_16925 PF02780 Transketolase, C-terminal domain AFR_16930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFR_16930 PF02817 e3 binding domain AFR_16930 PF00364 Biotin-requiring enzyme AFR_16935 PF07690 Major Facilitator Superfamily AFR_16945 PF00356 Bacterial regulatory proteins, lacI family AFR_16960 PF00072 Response regulator receiver domain AFR_16960 PF00486 Transcriptional regulatory protein, C terminal AFR_16965 PF05922 Peptidase inhibitor I9 AFR_16965 PF00082 Subtilase family AFR_16980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_16980 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_16995 PF00563 EAL domain AFR_16995 PF00990 Diguanylate cyclase, GGDEF domain AFR_16995 PF03707 Bacterial signalling protein N terminal repeat AFR_16995 PF13188 PAS domain AFR_17000 PF00155 Aminotransferase class I and II AFR_17015 PF00069 Protein kinase domain AFR_17015 PF03793 PASTA domain AFR_17040 PF04542 Sigma-70 region 2 AFR_17040 PF08281 Sigma-70, region 4 AFR_17045 PF00781 Diacylglycerol kinase catalytic domain AFR_17055 PF01494 FAD binding domain AFR_17075 PF01872 RibD C-terminal domain AFR_17085 PF03707 Bacterial signalling protein N terminal repeat AFR_17085 PF13188 PAS domain AFR_17085 PF00563 EAL domain AFR_17085 PF00990 Diguanylate cyclase, GGDEF domain AFR_17090 PF00155 Aminotransferase class I and II AFR_17095 PF07690 Major Facilitator Superfamily AFR_17105 PF16499 Alpha galactosidase A AFR_17105 PF17801 Alpha galactosidase C-terminal beta sandwich domain AFR_17115 PF09335 SNARE associated Golgi protein AFR_17120 PF00106 short chain dehydrogenase AFR_17130 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_17150 PF13407 Periplasmic binding protein domain AFR_17155 PF02653 Branched-chain amino acid transport system / permease component AFR_17160 PF00005 ABC transporter AFR_17185 PF00990 Diguanylate cyclase, GGDEF domain AFR_17185 PF00563 EAL domain AFR_17185 PF03707 Bacterial signalling protein N terminal repeat AFR_17190 PF00512 His Kinase A (phospho-acceptor) domain AFR_17190 PF08446 PAS fold AFR_17190 PF00360 Phytochrome region AFR_17190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_17190 PF01590 GAF domain AFR_17195 PF06271 RDD family AFR_17205 PF01594 AI-2E family transporter AFR_17210 PF13443 Cro/C1-type HTH DNA-binding domain AFR_17220 PF03358 NADPH-dependent FMN reductase AFR_17225 PF00072 Response regulator receiver domain AFR_17260 PF03069 Acetamidase/Formamidase family AFR_17290 PF00561 alpha/beta hydrolase fold AFR_17295 PF00196 Bacterial regulatory proteins, luxR family AFR_17310 PF12833 Helix-turn-helix domain AFR_17310 PF12852 Cupin AFR_17315 PF12704 MacB-like periplasmic core domain AFR_17315 PF02687 FtsX-like permease family AFR_17320 PF00005 ABC transporter AFR_17320 PF02687 FtsX-like permease family AFR_17320 PF12704 MacB-like periplasmic core domain AFR_17335 PF00486 Transcriptional regulatory protein, C terminal AFR_17335 PF00072 Response regulator receiver domain AFR_17340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_17340 PF00672 HAMP domain AFR_17340 PF00512 His Kinase A (phospho-acceptor) domain AFR_17345 PF00990 Diguanylate cyclase, GGDEF domain AFR_17345 PF13188 PAS domain AFR_17345 PF00563 EAL domain AFR_17345 PF03707 Bacterial signalling protein N terminal repeat AFR_17355 PF00535 Glycosyl transferase family 2 AFR_17360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_17360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_17365 PF08240 Alcohol dehydrogenase GroES-like domain AFR_17365 PF00107 Zinc-binding dehydrogenase AFR_17370 PF00990 Diguanylate cyclase, GGDEF domain AFR_17370 PF08448 PAS fold AFR_17380 PF00563 EAL domain AFR_17380 PF00990 Diguanylate cyclase, GGDEF domain AFR_17380 PF03707 Bacterial signalling protein N terminal repeat AFR_17380 PF13188 PAS domain AFR_17405 PF00082 Subtilase family AFR_17450 PF01965 DJ-1/PfpI family AFR_17455 PF01965 DJ-1/PfpI family AFR_17480 PF12833 Helix-turn-helix domain AFR_17480 PF12852 Cupin AFR_17485 PF00106 short chain dehydrogenase AFR_17515 PF04545 Sigma-70, region 4 AFR_17515 PF04539 Sigma-70 region 3 AFR_17515 PF04542 Sigma-70 region 2 AFR_17525 PF00356 Bacterial regulatory proteins, lacI family AFR_17530 PF00069 Protein kinase domain AFR_17545 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_17550 PF00561 alpha/beta hydrolase fold AFR_17565 PF01095 Pectinesterase AFR_17570 PF00682 HMGL-like AFR_17575 PF00392 Bacterial regulatory proteins, gntR family AFR_17575 PF07729 FCD domain AFR_17580 PF02515 CoA-transferase family III AFR_17585 PF05378 Hydantoinase/oxoprolinase N-terminal region AFR_17585 PF01968 Hydantoinase/oxoprolinase AFR_17590 PF02538 Hydantoinase B/oxoprolinase AFR_17595 PF00857 Isochorismatase family AFR_17605 PF00480 ROK family AFR_17615 PF00528 Binding-protein-dependent transport system inner membrane component AFR_17620 PF00528 Binding-protein-dependent transport system inner membrane component AFR_17630 PF02449 Beta-galactosidase AFR_17630 PF08532 Beta-galactosidase trimerisation domain AFR_17630 PF08533 Beta-galactosidase C-terminal domain AFR_17645 PF02018 Carbohydrate binding domain AFR_17645 PF06452 Carbohydrate family 9 binding domain-like AFR_17645 PF00331 Glycosyl hydrolase family 10 AFR_17650 PF00072 Response regulator receiver domain AFR_17650 PF00196 Bacterial regulatory proteins, luxR family AFR_17655 PF07730 Histidine kinase AFR_17655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_17675 PF00476 DNA polymerase family A AFR_17675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFR_17675 PF01367 5'-3' exonuclease, C-terminal SAM fold AFR_17690 PF00202 Aminotransferase class-III AFR_17700 PF03576 Peptidase family S58 AFR_17715 PF00652 Ricin-type beta-trefoil lectin domain AFR_17715 PF00331 Glycosyl hydrolase family 10 AFR_17720 PF07969 Amidohydrolase family AFR_17745 PF00072 Response regulator receiver domain AFR_17750 PF02016 LD-carboxypeptidase N-terminal domain AFR_17750 PF17676 LD-carboxypeptidase C-terminal domain AFR_17780 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_17780 PF00403 Heavy-metal-associated domain AFR_17780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_17800 PF00563 EAL domain AFR_17800 PF00990 Diguanylate cyclase, GGDEF domain AFR_17800 PF03707 Bacterial signalling protein N terminal repeat AFR_17810 PF07859 alpha/beta hydrolase fold AFR_17840 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFR_17850 PF01209 ubiE/COQ5 methyltransferase family AFR_17860 PF03466 LysR substrate binding domain AFR_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_17865 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain AFR_17865 PF04616 Glycosyl hydrolases family 43 AFR_17870 PF04616 Glycosyl hydrolases family 43 AFR_17875 PF00544 Pectate lyase AFR_17880 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AFR_17880 PF18416 N-acetylglucosamine binding protein domain 2 AFR_17905 PF13439 Glycosyltransferase Family 4 AFR_17905 PF00534 Glycosyl transferases group 1 AFR_17915 PF01565 FAD binding domain AFR_17915 PF02913 FAD linked oxidases, C-terminal domain AFR_17915 PF13183 4Fe-4S dicluster domain AFR_17920 PF01638 HxlR-like helix-turn-helix AFR_17925 PF02525 Flavodoxin-like fold AFR_17930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_17930 PF03466 LysR substrate binding domain AFR_17940 PF00296 Luciferase-like monooxygenase AFR_17945 PF00106 short chain dehydrogenase AFR_17955 PF00534 Glycosyl transferases group 1 AFR_17955 PF09318 Glycosyl transferase 1 domain A AFR_17960 PF11380 Stealth protein CR2, conserved region 2 AFR_17960 PF17102 Stealth protein CR3, conserved region 3 AFR_17960 PF17103 Stealth protein CR4, conserved region 4 AFR_17960 PF17101 Stealth protein CR1, conserved region 1 AFR_17965 PF17103 Stealth protein CR4, conserved region 4 AFR_17965 PF17102 Stealth protein CR3, conserved region 3 AFR_17965 PF11380 Stealth protein CR2, conserved region 2 AFR_17965 PF17101 Stealth protein CR1, conserved region 1 AFR_17980 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_17980 PF14310 Fibronectin type III-like domain AFR_17980 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_17990 PF00528 Binding-protein-dependent transport system inner membrane component AFR_17995 PF00528 Binding-protein-dependent transport system inner membrane component AFR_18000 PF00356 Bacterial regulatory proteins, lacI family AFR_18005 PF00331 Glycosyl hydrolase family 10 AFR_18005 PF00553 Cellulose binding domain AFR_18030 PF00652 Ricin-type beta-trefoil lectin domain AFR_18030 PF00331 Glycosyl hydrolase family 10 AFR_18035 PF10503 Esterase PHB depolymerase AFR_18045 PF12826 Helix-hairpin-helix motif AFR_18045 PF03120 NAD-dependent DNA ligase OB-fold domain AFR_18045 PF01653 NAD-dependent DNA ligase adenylation domain AFR_18045 PF00533 BRCA1 C Terminus (BRCT) domain AFR_18050 PF01872 RibD C-terminal domain AFR_18060 PF12849 PBP superfamily domain AFR_18065 PF00248 Aldo/keto reductase family AFR_18070 PF13977 BetI-type transcriptional repressor, C-terminal AFR_18070 PF00440 Bacterial regulatory proteins, tetR family AFR_18080 PF13732 Domain of unknown function (DUF4162) AFR_18080 PF00005 ABC transporter AFR_18090 PF05576 PS-10 peptidase S37 AFR_18100 PF00248 Aldo/keto reductase family AFR_18110 PF00400 WD domain, G-beta repeat AFR_18110 PF00069 Protein kinase domain AFR_18140 PF03707 Bacterial signalling protein N terminal repeat AFR_18140 PF00990 Diguanylate cyclase, GGDEF domain AFR_18140 PF00563 EAL domain AFR_18140 PF13188 PAS domain AFR_18145 PF00561 alpha/beta hydrolase fold AFR_18170 PF01593 Flavin containing amine oxidoreductase AFR_18185 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFR_18185 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_18190 PF00144 Beta-lactamase AFR_18210 PF12729 Four helix bundle sensory module for signal transduction AFR_18210 PF00672 HAMP domain AFR_18210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_18215 PF00005 ABC transporter AFR_18215 PF17912 MalK OB fold domain AFR_18220 PF00528 Binding-protein-dependent transport system inner membrane component AFR_18225 PF00528 Binding-protein-dependent transport system inner membrane component AFR_18245 PF11838 ERAP1-like C-terminal domain AFR_18245 PF01433 Peptidase family M1 domain AFR_18250 PF03435 Saccharopine dehydrogenase NADP binding domain AFR_18255 PF00990 Diguanylate cyclase, GGDEF domain AFR_18280 PF00356 Bacterial regulatory proteins, lacI family AFR_18285 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_18285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_18310 PF13458 Periplasmic binding protein AFR_18325 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFR_18325 PF00005 ABC transporter AFR_18330 PF00005 ABC transporter AFR_18375 PF00664 ABC transporter transmembrane region AFR_18375 PF00005 ABC transporter AFR_18380 PF00664 ABC transporter transmembrane region AFR_18380 PF00005 ABC transporter AFR_18385 PF00491 Arginase family AFR_18415 PF16874 Glycosyl hydrolase family 36 C-terminal domain AFR_18415 PF16875 Glycosyl hydrolase family 36 N-terminal domain AFR_18425 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFR_18425 PF00355 Rieske [2Fe-2S] domain AFR_18430 PF01266 FAD dependent oxidoreductase AFR_18435 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFR_18435 PF01266 FAD dependent oxidoreductase AFR_18435 PF01571 Aminomethyltransferase folate-binding domain AFR_18435 PF16350 FAD dependent oxidoreductase central domain AFR_18445 PF00528 Binding-protein-dependent transport system inner membrane component AFR_18450 PF00005 ABC transporter AFR_18450 PF00571 CBS domain AFR_18455 PF00732 GMC oxidoreductase AFR_18455 PF05199 GMC oxidoreductase AFR_18460 PF09335 SNARE associated Golgi protein AFR_18470 PF00005 ABC transporter AFR_18480 PF00206 Lyase AFR_18480 PF02655 ATP-grasp domain AFR_18485 PF18603 L-amino acid ligase C-terminal domain 2 AFR_18485 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_18490 PF00501 AMP-binding enzyme AFR_18490 PF00668 Condensation domain AFR_18490 PF00550 Phosphopantetheine attachment site AFR_18490 PF13193 AMP-binding enzyme C-terminal domain AFR_18495 PF00288 GHMP kinases N terminal domain AFR_18520 PF00501 AMP-binding enzyme AFR_18525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_18525 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_18525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_18540 PF00668 Condensation domain AFR_18540 PF00975 Thioesterase domain AFR_18540 PF00550 Phosphopantetheine attachment site AFR_18540 PF13193 AMP-binding enzyme C-terminal domain AFR_18540 PF00501 AMP-binding enzyme AFR_18545 PF00975 Thioesterase domain AFR_18545 PF00550 Phosphopantetheine attachment site AFR_18545 PF00668 Condensation domain AFR_18545 PF00501 AMP-binding enzyme AFR_18545 PF13193 AMP-binding enzyme C-terminal domain AFR_18550 PF00550 Phosphopantetheine attachment site AFR_18550 PF00668 Condensation domain AFR_18550 PF13193 AMP-binding enzyme C-terminal domain AFR_18550 PF00501 AMP-binding enzyme AFR_18550 PF00975 Thioesterase domain AFR_18555 PF03621 MbtH-like protein AFR_18560 PF12697 Alpha/beta hydrolase family AFR_18565 PF03176 MMPL family AFR_18570 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFR_18575 PF00072 Response regulator receiver domain AFR_18575 PF00196 Bacterial regulatory proteins, luxR family AFR_18580 PF07730 Histidine kinase AFR_18590 PF07690 Major Facilitator Superfamily AFR_18595 PF00440 Bacterial regulatory proteins, tetR family AFR_18595 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_18600 PF00291 Pyridoxal-phosphate dependent enzyme AFR_18610 PF07690 Major Facilitator Superfamily AFR_18620 PF00990 Diguanylate cyclase, GGDEF domain AFR_18630 PF00011 Hsp20/alpha crystallin family AFR_18640 PF00291 Pyridoxal-phosphate dependent enzyme AFR_18650 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_18685 PF04324 BFD-like [2Fe-2S] binding domain AFR_18685 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFR_18685 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_18685 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFR_18685 PF18267 Rubredoxin NAD+ reductase C-terminal domain AFR_18690 PF00355 Rieske [2Fe-2S] domain AFR_18695 PF07690 Major Facilitator Superfamily AFR_18720 PF00561 alpha/beta hydrolase fold AFR_18725 PF00106 short chain dehydrogenase AFR_18730 PF00743 Flavin-binding monooxygenase-like AFR_18735 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AFR_18735 PF12833 Helix-turn-helix domain AFR_18755 PF08713 DNA alkylation repair enzyme AFR_18760 PF01323 DSBA-like thioredoxin domain AFR_18795 PF01297 Zinc-uptake complex component A periplasmic AFR_18800 PF00005 ABC transporter AFR_18825 PF11606 Family 31 carbohydrate binding protein AFR_18860 PF13378 Enolase C-terminal domain-like AFR_18860 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_18865 PF06737 Transglycosylase-like domain AFR_18880 PF08533 Beta-galactosidase C-terminal domain AFR_18880 PF02449 Beta-galactosidase AFR_18880 PF08532 Beta-galactosidase trimerisation domain AFR_18885 PF00149 Calcineurin-like phosphoesterase AFR_18910 PF00990 Diguanylate cyclase, GGDEF domain AFR_18910 PF00072 Response regulator receiver domain AFR_18915 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_18915 PF02013 Cellulose or protein binding domain AFR_18920 PF03442 Carbohydrate binding domain X2 AFR_18920 PF00942 Cellulose binding domain AFR_18925 PF00553 Cellulose binding domain AFR_18925 PF00041 Fibronectin type III domain AFR_18925 PF02011 Glycosyl hydrolase family 48 AFR_18930 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AFR_18930 PF00553 Cellulose binding domain AFR_18935 PF00356 Bacterial regulatory proteins, lacI family AFR_18940 PF13407 Periplasmic binding protein domain AFR_18945 PF00005 ABC transporter AFR_18950 PF02653 Branched-chain amino acid transport system / permease component AFR_18955 PF02653 Branched-chain amino acid transport system / permease component AFR_18965 PF14437 MafB19-like deaminase AFR_18970 PF00296 Luciferase-like monooxygenase AFR_18975 PF07690 Major Facilitator Superfamily AFR_18980 PF07690 Major Facilitator Superfamily AFR_18990 PF04978 Protein of unknown function (DUF664) AFR_18995 PF01197 Ribosomal protein L31 AFR_19000 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFR_19000 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFR_19005 PF13203 Putative metallopeptidase domain AFR_19005 PF09967 VWA-like domain (DUF2201) AFR_19035 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_19035 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFR_19040 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFR_19040 PF00941 FAD binding domain in molybdopterin dehydrogenase AFR_19045 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_19045 PF01799 [2Fe-2S] binding domain AFR_19080 PF00149 Calcineurin-like phosphoesterase AFR_19085 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFR_19085 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFR_19095 PF01965 DJ-1/PfpI family AFR_19120 PF00990 Diguanylate cyclase, GGDEF domain AFR_19120 PF00563 EAL domain AFR_19120 PF08447 PAS fold AFR_19120 PF08448 PAS fold AFR_19125 PF01795 MraW methylase family AFR_19135 PF00296 Luciferase-like monooxygenase AFR_19140 PF06719 AraC-type transcriptional regulator N-terminus AFR_19140 PF12833 Helix-turn-helix domain AFR_19145 PF00248 Aldo/keto reductase family AFR_19165 PF00990 Diguanylate cyclase, GGDEF domain AFR_19165 PF03707 Bacterial signalling protein N terminal repeat AFR_19165 PF00563 EAL domain AFR_19165 PF13188 PAS domain AFR_19180 PF00962 Adenosine/AMP deaminase AFR_19185 PF01313 Bacterial export proteins, family 3 AFR_19205 PF00392 Bacterial regulatory proteins, gntR family AFR_19205 PF00155 Aminotransferase class I and II AFR_19230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19230 PF00512 His Kinase A (phospho-acceptor) domain AFR_19230 PF00672 HAMP domain AFR_19235 PF00072 Response regulator receiver domain AFR_19235 PF00486 Transcriptional regulatory protein, C terminal AFR_19250 PF00563 EAL domain AFR_19250 PF00990 Diguanylate cyclase, GGDEF domain AFR_19250 PF03707 Bacterial signalling protein N terminal repeat AFR_19255 PF01614 Bacterial transcriptional regulator AFR_19255 PF09339 IclR helix-turn-helix domain AFR_19260 PF02627 Carboxymuconolactone decarboxylase family AFR_19265 PF00561 alpha/beta hydrolase fold AFR_19270 PF10397 Adenylosuccinate lyase C-terminus AFR_19270 PF00206 Lyase AFR_19280 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AFR_19280 PF00775 Dioxygenase AFR_19285 PF01144 Coenzyme A transferase AFR_19290 PF01144 Coenzyme A transferase AFR_19295 PF01494 FAD binding domain AFR_19305 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19310 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19315 PF00005 ABC transporter AFR_19320 PF00171 Aldehyde dehydrogenase family AFR_19325 PF00561 alpha/beta hydrolase fold AFR_19375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_19375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_19380 PF02806 Alpha amylase, C-terminal all-beta domain AFR_19380 PF00128 Alpha amylase, catalytic domain AFR_19380 PF00686 Starch binding domain AFR_19385 PF00356 Bacterial regulatory proteins, lacI family AFR_19395 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19395 PF14785 Maltose transport system permease protein MalF P2 domain AFR_19400 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19420 PF13977 BetI-type transcriptional repressor, C-terminal AFR_19420 PF00440 Bacterial regulatory proteins, tetR family AFR_19430 PF04075 F420H(2)-dependent quinone reductase AFR_19435 PF07690 Major Facilitator Superfamily AFR_19440 PF01047 MarR family AFR_19445 PF00248 Aldo/keto reductase family AFR_19450 PF00854 POT family AFR_19455 PF06965 Na+/H+ antiporter 1 AFR_19455 PF13462 Thioredoxin AFR_19460 PF00144 Beta-lactamase AFR_19460 PF11954 Domain of unknown function (DUF3471) AFR_19470 PF00486 Transcriptional regulatory protein, C terminal AFR_19470 PF00072 Response regulator receiver domain AFR_19475 PF00512 His Kinase A (phospho-acceptor) domain AFR_19475 PF00672 HAMP domain AFR_19475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19490 PF01969 Protein of unknown function DUF111 AFR_19495 PF00731 AIR carboxylase AFR_19500 PF02540 NAD synthase AFR_19505 PF00356 Bacterial regulatory proteins, lacI family AFR_19520 PF00108 Thiolase, N-terminal domain AFR_19520 PF02803 Thiolase, C-terminal domain AFR_19525 PF00005 ABC transporter AFR_19540 PF13190 PDGLE domain AFR_19540 PF01891 Cobalt uptake substrate-specific transmembrane region AFR_19565 PF01668 SmpB protein AFR_19575 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_19575 PF00553 Cellulose binding domain AFR_19580 PF18370 Rhamnogalacturonan I lyases beta-sheet domain AFR_19590 PF00440 Bacterial regulatory proteins, tetR family AFR_19590 PF13977 BetI-type transcriptional repressor, C-terminal AFR_19595 PF02754 Cysteine-rich domain AFR_19595 PF13183 4Fe-4S dicluster domain AFR_19600 PF01565 FAD binding domain AFR_19600 PF02913 FAD linked oxidases, C-terminal domain AFR_19605 PF02913 FAD linked oxidases, C-terminal domain AFR_19605 PF01565 FAD binding domain AFR_19620 PF00107 Zinc-binding dehydrogenase AFR_19620 PF08240 Alcohol dehydrogenase GroES-like domain AFR_19635 PF07504 Fungalysin/Thermolysin Propeptide Motif AFR_19635 PF01447 Thermolysin metallopeptidase, catalytic domain AFR_19635 PF02868 Thermolysin metallopeptidase, alpha-helical domain AFR_19635 PF01483 Proprotein convertase P-domain AFR_19640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFR_19640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFR_19660 PF04542 Sigma-70 region 2 AFR_19660 PF08281 Sigma-70, region 4 AFR_19665 PF13409 Glutathione S-transferase, N-terminal domain AFR_19670 PF00563 EAL domain AFR_19670 PF08668 HDOD domain AFR_19690 PF00570 HRDC domain AFR_19690 PF00271 Helicase conserved C-terminal domain AFR_19690 PF09382 RQC domain AFR_19690 PF00270 DEAD/DEAH box helicase AFR_19690 PF16124 RecQ zinc-binding AFR_19695 PF09594 Glycosyltransferase family 87 AFR_19705 PF00561 alpha/beta hydrolase fold AFR_19715 PF00925 GTP cyclohydrolase II AFR_19720 PF01872 RibD C-terminal domain AFR_19720 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFR_19735 PF13439 Glycosyltransferase Family 4 AFR_19735 PF00534 Glycosyl transferases group 1 AFR_19750 PF01066 CDP-alcohol phosphatidyltransferase AFR_19755 PF01497 Periplasmic binding protein AFR_19760 PF00561 alpha/beta hydrolase fold AFR_19775 PF00860 Permease family AFR_19785 PF13411 MerR HTH family regulatory protein AFR_19815 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_19815 PF00175 Oxidoreductase NAD-binding domain AFR_19815 PF00970 Oxidoreductase FAD-binding domain AFR_19820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19820 PF00183 Hsp90 protein AFR_19830 PF00107 Zinc-binding dehydrogenase AFR_19830 PF16884 N-terminal domain of oxidoreductase AFR_19835 PF01738 Dienelactone hydrolase family AFR_19845 PF07690 Major Facilitator Superfamily AFR_19865 PF00294 pfkB family carbohydrate kinase AFR_19880 PF07690 Major Facilitator Superfamily AFR_19890 PF00440 Bacterial regulatory proteins, tetR family AFR_19900 PF02447 GntP family permease AFR_19910 PF12704 MacB-like periplasmic core domain AFR_19910 PF00005 ABC transporter AFR_19910 PF02687 FtsX-like permease family AFR_19920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19920 PF07730 Histidine kinase AFR_19925 PF01339 CheB methylesterase AFR_19925 PF00072 Response regulator receiver domain AFR_19930 PF00296 Luciferase-like monooxygenase AFR_19945 PF00912 Transglycosylase AFR_19945 PF00905 Penicillin binding protein transpeptidase domain AFR_19950 PF00072 Response regulator receiver domain AFR_19955 PF17203 Single cache domain 3 AFR_19955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19960 PF00375 Sodium:dicarboxylate symporter family AFR_19970 PF00356 Bacterial regulatory proteins, lacI family AFR_19975 PF17048 Neutral/alkaline non-lysosomal ceramidase, C-terminal AFR_19975 PF04734 Neutral/alkaline non-lysosomal ceramidase, N-terminal AFR_20000 PF00916 Sulfate permease family AFR_20000 PF01740 STAS domain AFR_20005 PF13411 MerR HTH family regulatory protein AFR_20010 PF07690 Major Facilitator Superfamily AFR_20020 PF08281 Sigma-70, region 4 AFR_20020 PF04542 Sigma-70 region 2 AFR_20035 PF00106 short chain dehydrogenase AFR_20040 PF00809 Pterin binding enzyme AFR_20045 PF00005 ABC transporter AFR_20045 PF00664 ABC transporter transmembrane region AFR_20050 PF00664 ABC transporter transmembrane region AFR_20050 PF00005 ABC transporter AFR_20055 PF07690 Major Facilitator Superfamily AFR_20080 PF00296 Luciferase-like monooxygenase AFR_20105 PF00563 EAL domain AFR_20105 PF00990 Diguanylate cyclase, GGDEF domain AFR_20105 PF03707 Bacterial signalling protein N terminal repeat AFR_20130 PF00069 Protein kinase domain AFR_20135 PF00664 ABC transporter transmembrane region AFR_20135 PF00005 ABC transporter AFR_20140 PF02322 Cytochrome bd terminal oxidase subunit II AFR_20145 PF01654 Cytochrome bd terminal oxidase subunit I AFR_20150 PF03965 Penicillinase repressor AFR_20160 PF08239 Bacterial SH3 domain AFR_20160 PF00877 NlpC/P60 family AFR_20160 PF01476 LysM domain AFR_20165 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AFR_20170 PF01047 MarR family AFR_20175 PF06441 Epoxide hydrolase N terminus AFR_20180 PF00990 Diguanylate cyclase, GGDEF domain AFR_20180 PF08447 PAS fold AFR_20180 PF13426 PAS domain AFR_20180 PF08448 PAS fold AFR_20180 PF05231 MASE1 AFR_20180 PF00563 EAL domain AFR_20185 PF00106 short chain dehydrogenase AFR_20195 PF00561 alpha/beta hydrolase fold AFR_20200 PF01434 Peptidase family M41 AFR_20200 PF06480 FtsH Extracellular AFR_20200 PF17862 AAA+ lid domain AFR_20200 PF00004 ATPase family associated with various cellular activities (AAA) AFR_20235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_20235 PF03466 LysR substrate binding domain AFR_20255 PF00290 Tryptophan synthase alpha chain AFR_20260 PF00291 Pyridoxal-phosphate dependent enzyme AFR_20275 PF02861 Clp amino terminal domain, pathogenicity island component AFR_20280 PF00072 Response regulator receiver domain AFR_20280 PF00196 Bacterial regulatory proteins, luxR family AFR_20285 PF07730 Histidine kinase AFR_20290 PF12146 Serine aminopeptidase, S33 AFR_20295 PF01638 HxlR-like helix-turn-helix AFR_20305 PF00005 ABC transporter AFR_20315 PF00072 Response regulator receiver domain AFR_20315 PF00486 Transcriptional regulatory protein, C terminal AFR_20320 PF00512 His Kinase A (phospho-acceptor) domain AFR_20320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_20320 PF00672 HAMP domain AFR_20355 PF01022 Bacterial regulatory protein, arsR family AFR_20375 PF00072 Response regulator receiver domain AFR_20375 PF00196 Bacterial regulatory proteins, luxR family AFR_20380 PF07730 Histidine kinase AFR_20395 PF03060 Nitronate monooxygenase AFR_20405 PF03707 Bacterial signalling protein N terminal repeat AFR_20405 PF00990 Diguanylate cyclase, GGDEF domain AFR_20405 PF00563 EAL domain AFR_20410 PF18011 C-terminal domain found in long catalases AFR_20410 PF00199 Catalase AFR_20410 PF06628 Catalase-related immune-responsive AFR_20415 PF00561 alpha/beta hydrolase fold AFR_20425 PF09383 NIL domain AFR_20425 PF00005 ABC transporter AFR_20430 PF00528 Binding-protein-dependent transport system inner membrane component AFR_20435 PF03180 NLPA lipoprotein AFR_20450 PF00342 Phosphoglucose isomerase AFR_20460 PF00041 Fibronectin type III domain AFR_20460 PF00704 Glycosyl hydrolases family 18 AFR_20465 PF01810 LysE type translocator AFR_20475 PF03358 NADPH-dependent FMN reductase AFR_20480 PF00300 Histidine phosphatase superfamily (branch 1) AFR_20485 PF00440 Bacterial regulatory proteins, tetR family AFR_20500 PF00480 ROK family AFR_20505 PF07690 Major Facilitator Superfamily AFR_20510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_20510 PF13378 Enolase C-terminal domain-like AFR_20515 PF00528 Binding-protein-dependent transport system inner membrane component AFR_20520 PF00528 Binding-protein-dependent transport system inner membrane component AFR_20525 PF08402 TOBE domain AFR_20525 PF00005 ABC transporter AFR_20535 PF00356 Bacterial regulatory proteins, lacI family AFR_20540 PF00356 Bacterial regulatory proteins, lacI family AFR_20565 PF00486 Transcriptional regulatory protein, C terminal AFR_20565 PF00072 Response regulator receiver domain AFR_20570 PF00512 His Kinase A (phospho-acceptor) domain AFR_20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_20570 PF00672 HAMP domain AFR_20580 PF00005 ABC transporter AFR_20585 PF00005 ABC transporter AFR_20585 PF02687 FtsX-like permease family AFR_20585 PF12704 MacB-like periplasmic core domain AFR_20600 PF00196 Bacterial regulatory proteins, luxR family AFR_20600 PF00072 Response regulator receiver domain AFR_20605 PF01447 Thermolysin metallopeptidase, catalytic domain AFR_20605 PF02868 Thermolysin metallopeptidase, alpha-helical domain AFR_20605 PF04389 Peptidase family M28 AFR_20625 PF03741 Integral membrane protein TerC family AFR_20630 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_20670 PF13977 BetI-type transcriptional repressor, C-terminal AFR_20670 PF00440 Bacterial regulatory proteins, tetR family AFR_20685 PF00294 pfkB family carbohydrate kinase AFR_20695 PF04962 KduI/IolB family AFR_20700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_20700 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_20700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_20705 PF00171 Aldehyde dehydrogenase family AFR_20710 PF01261 Xylose isomerase-like TIM barrel AFR_20720 PF02653 Branched-chain amino acid transport system / permease component AFR_20725 PF00005 ABC transporter AFR_20730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_20730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_20735 PF01261 Xylose isomerase-like TIM barrel AFR_20745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_20745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_20750 PF00356 Bacterial regulatory proteins, lacI family AFR_20755 PF00691 OmpA family AFR_20755 PF05736 OprF membrane domain AFR_20760 PF01261 Xylose isomerase-like TIM barrel AFR_20765 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_20765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_20770 PF00356 Bacterial regulatory proteins, lacI family AFR_20780 PF18665 Tetracyclin repressor-like, C-terminal domain AFR_20780 PF00440 Bacterial regulatory proteins, tetR family AFR_20785 PF03061 Thioesterase superfamily AFR_20795 PF02803 Thiolase, C-terminal domain AFR_20795 PF00108 Thiolase, N-terminal domain AFR_20800 PF00378 Enoyl-CoA hydratase/isomerase AFR_20805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFR_20805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFR_20810 PF05138 Phenylacetic acid catabolic protein AFR_20815 PF06243 Phenylacetic acid degradation B AFR_20820 PF05138 Phenylacetic acid catabolic protein AFR_20825 PF01883 Iron-sulfur cluster assembly protein AFR_20830 PF00175 Oxidoreductase NAD-binding domain AFR_20830 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_20830 PF00970 Oxidoreductase FAD-binding domain AFR_20845 PF00248 Aldo/keto reductase family AFR_20850 PF03707 Bacterial signalling protein N terminal repeat AFR_20850 PF00990 Diguanylate cyclase, GGDEF domain AFR_20850 PF00563 EAL domain AFR_20855 PF01209 ubiE/COQ5 methyltransferase family AFR_20885 PF04545 Sigma-70, region 4 AFR_20885 PF04542 Sigma-70 region 2 AFR_20895 PF03176 MMPL family AFR_20905 PF00196 Bacterial regulatory proteins, luxR family AFR_20905 PF00072 Response regulator receiver domain AFR_20915 PF00005 ABC transporter AFR_20950 PF00005 ABC transporter AFR_20950 PF12857 TOBE-like domain AFR_21000 PF12833 Helix-turn-helix domain AFR_21000 PF14525 AraC-binding-like domain AFR_21020 PF00483 Nucleotidyl transferase AFR_21025 PF00534 Glycosyl transferases group 1 AFR_21025 PF13439 Glycosyltransferase Family 4 AFR_21030 PF01593 Flavin containing amine oxidoreductase AFR_21035 PF02638 Glycosyl hydrolase-like 10 AFR_21040 PF16326 ABC transporter C-terminal domain AFR_21040 PF12848 ABC transporter AFR_21040 PF00005 ABC transporter AFR_21045 PF02567 Phenazine biosynthesis-like protein AFR_21050 PF17863 AAA lid domain AFR_21050 PF01078 Magnesium chelatase, subunit ChlI AFR_21070 PF06947 Protein of unknown function (DUF1290) AFR_21080 PF01597 Glycine cleavage H-protein AFR_21085 PF00498 FHA domain AFR_21090 PF00376 MerR family regulatory protein AFR_21095 PF02577 Bifunctional nuclease AFR_21100 PF13411 MerR HTH family regulatory protein AFR_21105 PF00005 ABC transporter AFR_21105 PF17760 UvrA interaction domain AFR_21105 PF17755 UvrA DNA-binding domain AFR_21110 PF03848 Tellurite resistance protein TehB AFR_21120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_21120 PF03466 LysR substrate binding domain AFR_21125 PF00892 EamA-like transporter family AFR_21130 PF00313 'Cold-shock' DNA-binding domain AFR_21135 PF08241 Methyltransferase domain AFR_21150 PF13537 Glutamine amidotransferase domain AFR_21150 PF00733 Asparagine synthase AFR_21155 PF00072 Response regulator receiver domain AFR_21155 PF00486 Transcriptional regulatory protein, C terminal AFR_21160 PF00672 HAMP domain AFR_21160 PF00512 His Kinase A (phospho-acceptor) domain AFR_21160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_21190 PF00248 Aldo/keto reductase family AFR_21195 PF02347 Glycine cleavage system P-protein AFR_21205 PF04715 Anthranilate synthase component I, N terminal region AFR_21205 PF00425 chorismate binding enzyme AFR_21220 PF08281 Sigma-70, region 4 AFR_21220 PF04542 Sigma-70 region 2 AFR_21225 PF01327 Polypeptide deformylase AFR_21235 PF00293 NUDIX domain AFR_21240 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_21240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_21250 PF04183 IucA / IucC family AFR_21250 PF06276 Ferric iron reductase FhuF-like transporter AFR_21265 PF00005 ABC transporter AFR_21275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_21275 PF07730 Histidine kinase AFR_21280 PF00072 Response regulator receiver domain AFR_21280 PF00196 Bacterial regulatory proteins, luxR family AFR_21285 PF04545 Sigma-70, region 4 AFR_21285 PF04539 Sigma-70 region 3 AFR_21285 PF04542 Sigma-70 region 2 AFR_21300 PF00005 ABC transporter AFR_21300 PF12848 ABC transporter AFR_21305 PF00589 Phage integrase family AFR_21305 PF02899 Phage integrase, N-terminal SAM-like domain AFR_21310 PF02673 Bacitracin resistance protein BacA AFR_21325 PF12697 Alpha/beta hydrolase family AFR_21335 PF00067 Cytochrome P450 AFR_21340 PF06902 Divergent 4Fe-4S mono-cluster AFR_21360 PF11700 Vacuole effluxer Atg22 like AFR_21375 PF00350 Dynamin family AFR_21385 PF00196 Bacterial regulatory proteins, luxR family AFR_21385 PF00072 Response regulator receiver domain AFR_21410 PF04951 D-aminopeptidase AFR_21415 PF01553 Acyltransferase AFR_21435 PF00486 Transcriptional regulatory protein, C terminal AFR_21435 PF03704 Bacterial transcriptional activator domain AFR_21435 PF00931 NB-ARC domain AFR_21460 PF00440 Bacterial regulatory proteins, tetR family AFR_21475 PF00589 Phage integrase family AFR_21475 PF02899 Phage integrase, N-terminal SAM-like domain AFR_21480 PF00561 alpha/beta hydrolase fold AFR_21485 PF02566 OsmC-like protein AFR_21490 PF01047 MarR family AFR_21505 PF03928 Haem-degrading AFR_21510 PF00009 Elongation factor Tu GTP binding domain AFR_21510 PF03764 Elongation factor G, domain IV AFR_21510 PF00679 Elongation factor G C-terminus AFR_21525 PF00296 Luciferase-like monooxygenase AFR_21560 PF00196 Bacterial regulatory proteins, luxR family AFR_21560 PF00072 Response regulator receiver domain AFR_21575 PF07730 Histidine kinase AFR_21580 PF00196 Bacterial regulatory proteins, luxR family AFR_21580 PF00072 Response regulator receiver domain AFR_21590 PF08241 Methyltransferase domain AFR_21595 PF00561 alpha/beta hydrolase fold AFR_21600 PF01494 FAD binding domain AFR_21630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_21630 PF03466 LysR substrate binding domain AFR_21635 PF00701 Dihydrodipicolinate synthetase family AFR_21645 PF00563 EAL domain AFR_21645 PF00990 Diguanylate cyclase, GGDEF domain AFR_21645 PF03707 Bacterial signalling protein N terminal repeat AFR_21655 PF00893 Small Multidrug Resistance protein AFR_21665 PF00356 Bacterial regulatory proteins, lacI family AFR_21670 PF01547 Bacterial extracellular solute-binding protein AFR_21675 PF00528 Binding-protein-dependent transport system inner membrane component AFR_21680 PF00528 Binding-protein-dependent transport system inner membrane component AFR_21690 PF01229 Glycosyl hydrolases family 39 AFR_21695 PF00196 Bacterial regulatory proteins, luxR family AFR_21695 PF00072 Response regulator receiver domain AFR_21700 PF07730 Histidine kinase AFR_21720 PF05922 Peptidase inhibitor I9 AFR_21720 PF00082 Subtilase family AFR_21765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_21765 PF00672 HAMP domain AFR_21765 PF01627 Hpt domain AFR_21765 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AFR_21765 PF00072 Response regulator receiver domain AFR_21765 PF00512 His Kinase A (phospho-acceptor) domain AFR_21775 PF13397 RNA polymerase-binding protein AFR_21785 PF00535 Glycosyl transferase family 2 AFR_21790 PF00535 Glycosyl transferase family 2 AFR_21790 PF00795 Carbon-nitrogen hydrolase AFR_21795 PF13941 MutL protein AFR_21800 PF03061 Thioesterase superfamily AFR_21805 PF02310 B12 binding domain AFR_21805 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase AFR_21810 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit AFR_21830 PF05532 CsbD-like AFR_21835 PF08241 Methyltransferase domain AFR_21845 PF00072 Response regulator receiver domain AFR_21845 PF00486 Transcriptional regulatory protein, C terminal AFR_21850 PF00561 alpha/beta hydrolase fold AFR_21855 PF01037 Lrp/AsnC ligand binding domain AFR_21860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_21860 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_21860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_21865 PF01367 5'-3' exonuclease, C-terminal SAM fold AFR_21865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFR_21870 PF08448 PAS fold AFR_21870 PF08447 PAS fold AFR_21870 PF00990 Diguanylate cyclase, GGDEF domain AFR_21870 PF00563 EAL domain AFR_21880 PF00440 Bacterial regulatory proteins, tetR family AFR_21885 PF01738 Dienelactone hydrolase family AFR_21895 PF13426 PAS domain AFR_21895 PF00990 Diguanylate cyclase, GGDEF domain AFR_21895 PF00563 EAL domain AFR_21905 PF11606 Family 31 carbohydrate binding protein AFR_21925 PF00196 Bacterial regulatory proteins, luxR family AFR_21925 PF00072 Response regulator receiver domain AFR_21935 PF00005 ABC transporter AFR_21980 PF00561 alpha/beta hydrolase fold AFR_21995 PF05067 Manganese containing catalase AFR_22015 PF01566 Natural resistance-associated macrophage protein AFR_22020 PF00072 Response regulator receiver domain AFR_22020 PF00486 Transcriptional regulatory protein, C terminal AFR_22065 PF13732 Domain of unknown function (DUF4162) AFR_22065 PF00005 ABC transporter AFR_22070 PF01061 ABC-2 type transporter AFR_22075 PF05139 Erythromycin esterase AFR_22095 PF05977 Transmembrane secretion effector AFR_22135 PF17754 MftR C-terminal domain AFR_22135 PF00440 Bacterial regulatory proteins, tetR family AFR_22140 PF00106 short chain dehydrogenase AFR_22165 PF04542 Sigma-70 region 2 AFR_22165 PF04545 Sigma-70, region 4 AFR_22175 PF00072 Response regulator receiver domain AFR_22175 PF00196 Bacterial regulatory proteins, luxR family AFR_22190 PF13492 GAF domain AFR_22190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_22190 PF07730 Histidine kinase AFR_22190 PF13185 GAF domain AFR_22230 PF01546 Peptidase family M20/M25/M40 AFR_22230 PF07687 Peptidase dimerisation domain AFR_22235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_22235 PF03466 LysR substrate binding domain AFR_22245 PF00581 Rhodanese-like domain AFR_22250 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22255 PF00005 ABC transporter AFR_22265 PF00296 Luciferase-like monooxygenase AFR_22280 PF01565 FAD binding domain AFR_22280 PF02913 FAD linked oxidases, C-terminal domain AFR_22295 PF01042 Endoribonuclease L-PSP AFR_22300 PF00296 Luciferase-like monooxygenase AFR_22305 PF09084 NMT1/THI5 like AFR_22310 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22315 PF00005 ABC transporter AFR_22320 PF05360 yiaA/B two helix domain AFR_22335 PF00890 FAD binding domain AFR_22335 PF02910 Fumarate reductase flavoprotein C-term AFR_22340 PF00296 Luciferase-like monooxygenase AFR_22345 PF00296 Luciferase-like monooxygenase AFR_22360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_22360 PF00005 ABC transporter AFR_22370 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_22385 PF02687 FtsX-like permease family AFR_22385 PF00005 ABC transporter AFR_22385 PF12704 MacB-like periplasmic core domain AFR_22400 PF00582 Universal stress protein family AFR_22405 PF13520 Amino acid permease AFR_22415 PF00701 Dihydrodipicolinate synthetase family AFR_22430 PF01055 Glycosyl hydrolases family 31 AFR_22430 PF13802 Galactose mutarotase-like AFR_22435 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22440 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22460 PF00356 Bacterial regulatory proteins, lacI family AFR_22475 PF13439 Glycosyltransferase Family 4 AFR_22475 PF00534 Glycosyl transferases group 1 AFR_22480 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFR_22485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_22485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_22490 PF01116 Fructose-bisphosphate aldolase class-II AFR_22495 PF00294 pfkB family carbohydrate kinase AFR_22505 PF00294 pfkB family carbohydrate kinase AFR_22515 PF08241 Methyltransferase domain AFR_22530 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22535 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22540 PF13416 Bacterial extracellular solute-binding protein AFR_22545 PF01380 SIS domain AFR_22550 PF02056 Family 4 glycosyl hydrolase AFR_22550 PF11975 Family 4 glycosyl hydrolase C-terminal domain AFR_22555 PF00455 DeoR C terminal sensor domain AFR_22555 PF08220 DeoR-like helix-turn-helix domain AFR_22560 PF04973 Nicotinamide mononucleotide transporter AFR_22580 PF00440 Bacterial regulatory proteins, tetR family AFR_22580 PF08361 MAATS-type transcriptional repressor, C-terminal region AFR_22585 PF00106 short chain dehydrogenase AFR_22605 PF12697 Alpha/beta hydrolase family AFR_22615 PF01434 Peptidase family M41 AFR_22615 PF17862 AAA+ lid domain AFR_22615 PF00004 ATPase family associated with various cellular activities (AAA) AFR_22620 PF13411 MerR HTH family regulatory protein AFR_22620 PF07739 TipAS antibiotic-recognition domain AFR_22625 PF01061 ABC-2 type transporter AFR_22630 PF13732 Domain of unknown function (DUF4162) AFR_22630 PF00005 ABC transporter AFR_22675 PF13191 AAA ATPase domain AFR_22675 PF00069 Protein kinase domain AFR_22685 PF06259 Alpha/beta hydrolase AFR_22695 PF01494 FAD binding domain AFR_22725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_22725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_22725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_22735 PF03952 Enolase, N-terminal domain AFR_22735 PF00113 Enolase, C-terminal TIM barrel domain AFR_22740 PF13411 MerR HTH family regulatory protein AFR_22745 PF03453 MoeA N-terminal region (domain I and II) AFR_22745 PF00994 Probable molybdopterin binding domain AFR_22745 PF03454 MoeA C-terminal region (domain IV) AFR_22750 PF01209 ubiE/COQ5 methyltransferase family AFR_22755 PF16916 Dimerisation domain of Zinc Transporter AFR_22755 PF01545 Cation efflux family AFR_22765 PF16591 Helical bimodular sensor domain AFR_22765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_22765 PF00672 HAMP domain AFR_22770 PF00563 EAL domain AFR_22770 PF00990 Diguanylate cyclase, GGDEF domain AFR_22770 PF03707 Bacterial signalling protein N terminal repeat AFR_22785 PF01799 [2Fe-2S] binding domain AFR_22785 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFR_22785 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_22805 PF13520 Amino acid permease AFR_22810 PF00486 Transcriptional regulatory protein, C terminal AFR_22810 PF00072 Response regulator receiver domain AFR_22815 PF02146 Sir2 family AFR_22820 PF08281 Sigma-70, region 4 AFR_22820 PF04542 Sigma-70 region 2 AFR_22845 PF04542 Sigma-70 region 2 AFR_22845 PF08281 Sigma-70, region 4 AFR_22845 PF12680 SnoaL-like domain AFR_22875 PF01734 Patatin-like phospholipase AFR_22880 PF09364 XFP N-terminal domain AFR_22880 PF09363 XFP C-terminal domain AFR_22880 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AFR_22890 PF00248 Aldo/keto reductase family AFR_22900 PF00459 Inositol monophosphatase family AFR_22905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_22905 PF03466 LysR substrate binding domain AFR_22915 PF07690 Major Facilitator Superfamily AFR_22945 PF00107 Zinc-binding dehydrogenase AFR_22945 PF08240 Alcohol dehydrogenase GroES-like domain AFR_22970 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_22970 PF00553 Cellulose binding domain AFR_22975 PF01494 FAD binding domain AFR_22980 PF00440 Bacterial regulatory proteins, tetR family AFR_22995 PF01740 STAS domain AFR_23005 PF11066 Protein of unknown function (DUF2867) AFR_23005 PF13460 NAD(P)H-binding AFR_23010 PF00440 Bacterial regulatory proteins, tetR family AFR_23020 PF00175 Oxidoreductase NAD-binding domain AFR_23020 PF00970 Oxidoreductase FAD-binding domain AFR_23020 PF00042 Globin AFR_23030 PF07690 Major Facilitator Superfamily AFR_23040 PF00106 short chain dehydrogenase AFR_23050 PF00196 Bacterial regulatory proteins, luxR family AFR_23055 PF06441 Epoxide hydrolase N terminus AFR_23060 PF06441 Epoxide hydrolase N terminus AFR_23095 PF03176 MMPL family AFR_23115 PF00296 Luciferase-like monooxygenase AFR_23125 PF00881 Nitroreductase family AFR_23145 PF02525 Flavodoxin-like fold AFR_23175 PF00106 short chain dehydrogenase AFR_23195 PF00082 Subtilase family AFR_23215 PF00072 Response regulator receiver domain AFR_23215 PF00196 Bacterial regulatory proteins, luxR family AFR_23220 PF01116 Fructose-bisphosphate aldolase class-II AFR_23225 PF13419 Haloacid dehalogenase-like hydrolase AFR_23230 PF02734 DAK2 domain AFR_23235 PF02733 Dak1 domain AFR_23245 PF01022 Bacterial regulatory protein, arsR family AFR_23265 PF02735 Ku70/Ku80 beta-barrel domain AFR_23275 PF00296 Luciferase-like monooxygenase AFR_23295 PF00106 short chain dehydrogenase AFR_23305 PF02709 N-terminal domain of galactosyltransferase AFR_23305 PF00535 Glycosyl transferase family 2 AFR_23310 PF04101 Glycosyltransferase family 28 C-terminal domain AFR_23310 PF03033 Glycosyltransferase family 28 N-terminal domain AFR_23315 PF00534 Glycosyl transferases group 1 AFR_23315 PF13439 Glycosyltransferase Family 4 AFR_23335 PF00535 Glycosyl transferase family 2 AFR_23385 PF01380 SIS domain AFR_23395 PF18011 C-terminal domain found in long catalases AFR_23395 PF06628 Catalase-related immune-responsive AFR_23395 PF00199 Catalase AFR_23415 PF08240 Alcohol dehydrogenase GroES-like domain AFR_23415 PF00107 Zinc-binding dehydrogenase AFR_23425 PF03033 Glycosyltransferase family 28 N-terminal domain AFR_23430 PF13538 UvrD-like helicase C-terminal domain AFR_23450 PF08281 Sigma-70, region 4 AFR_23450 PF12680 SnoaL-like domain AFR_23450 PF04542 Sigma-70 region 2 AFR_23465 PF00072 Response regulator receiver domain AFR_23465 PF00486 Transcriptional regulatory protein, C terminal AFR_23470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_23470 PF00512 His Kinase A (phospho-acceptor) domain AFR_23470 PF00672 HAMP domain AFR_23485 PF13847 Methyltransferase domain AFR_23495 PF00535 Glycosyl transferase family 2 AFR_23500 PF01370 NAD dependent epimerase/dehydratase family AFR_23530 PF00571 CBS domain AFR_23540 PF06441 Epoxide hydrolase N terminus AFR_23545 PF17754 MftR C-terminal domain AFR_23545 PF00440 Bacterial regulatory proteins, tetR family AFR_23550 PF01494 FAD binding domain AFR_23555 PF00561 alpha/beta hydrolase fold AFR_23560 PF00722 Glycosyl hydrolases family 16 AFR_23565 PF02016 LD-carboxypeptidase N-terminal domain AFR_23565 PF17676 LD-carboxypeptidase C-terminal domain AFR_23580 PF00665 Integrase core domain AFR_23580 PF13936 Helix-turn-helix domain AFR_23595 PF01522 Polysaccharide deacetylase AFR_23600 PF12697 Alpha/beta hydrolase family AFR_23620 PF01032 FecCD transport family AFR_23625 PF01032 FecCD transport family AFR_23630 PF00005 ABC transporter AFR_23635 PF00005 ABC transporter AFR_23635 PF00664 ABC transporter transmembrane region AFR_23640 PF00005 ABC transporter AFR_23640 PF00664 ABC transporter transmembrane region AFR_23650 PF03466 LysR substrate binding domain AFR_23650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_23665 PF03621 MbtH-like protein AFR_23670 PF00550 Phosphopantetheine attachment site AFR_23670 PF00668 Condensation domain AFR_23670 PF13193 AMP-binding enzyme C-terminal domain AFR_23670 PF00501 AMP-binding enzyme AFR_23675 PF00550 Phosphopantetheine attachment site AFR_23675 PF00668 Condensation domain AFR_23675 PF13193 AMP-binding enzyme C-terminal domain AFR_23675 PF00501 AMP-binding enzyme AFR_23680 PF08241 Methyltransferase domain AFR_23680 PF13193 AMP-binding enzyme C-terminal domain AFR_23680 PF00668 Condensation domain AFR_23680 PF00391 PEP-utilising enzyme, mobile domain AFR_23680 PF00975 Thioesterase domain AFR_23680 PF00501 AMP-binding enzyme AFR_23680 PF00550 Phosphopantetheine attachment site AFR_23685 PF03358 NADPH-dependent FMN reductase AFR_23685 PF04205 FMN-binding domain AFR_23685 PF00890 FAD binding domain AFR_23690 PF07883 Cupin domain AFR_23695 PF09339 IclR helix-turn-helix domain AFR_23695 PF01614 Bacterial transcriptional regulator AFR_23700 PF00106 short chain dehydrogenase AFR_23710 PF00561 alpha/beta hydrolase fold AFR_23715 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_23730 PF00202 Aminotransferase class-III AFR_23735 PF16363 GDP-mannose 4,6 dehydratase AFR_23745 PF00682 HMGL-like AFR_23745 PF07836 DmpG-like communication domain AFR_23750 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFR_23750 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AFR_23755 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_23760 PF09339 IclR helix-turn-helix domain AFR_23760 PF01614 Bacterial transcriptional regulator AFR_23795 PF00485 Phosphoribulokinase / Uridine kinase family AFR_23800 PF00923 Transaldolase/Fructose-6-phosphate aldolase AFR_23805 PF05368 NmrA-like family AFR_23835 PF00155 Aminotransferase class I and II AFR_23845 PF11774 Lsr2 AFR_23860 PF00106 short chain dehydrogenase AFR_23870 PF04542 Sigma-70 region 2 AFR_23870 PF08281 Sigma-70, region 4 AFR_23915 PF04542 Sigma-70 region 2 AFR_23915 PF08281 Sigma-70, region 4 AFR_23920 PF03795 YCII-related domain AFR_23925 PF08281 Sigma-70, region 4 AFR_23925 PF04542 Sigma-70 region 2 AFR_23930 PF01047 MarR family AFR_23935 PF00892 EamA-like transporter family AFR_23940 PF03741 Integral membrane protein TerC family AFR_23950 PF03466 LysR substrate binding domain AFR_23950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_23965 PF01547 Bacterial extracellular solute-binding protein AFR_23970 PF00528 Binding-protein-dependent transport system inner membrane component AFR_23975 PF00528 Binding-protein-dependent transport system inner membrane component AFR_23980 PF00343 Carbohydrate phosphorylase AFR_23995 PF00072 Response regulator receiver domain AFR_23995 PF13426 PAS domain AFR_23995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_23995 PF08448 PAS fold AFR_23995 PF00512 His Kinase A (phospho-acceptor) domain AFR_24000 PF07689 KaiB domain AFR_24000 PF00512 His Kinase A (phospho-acceptor) domain AFR_24000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24020 PF00005 ABC transporter AFR_24020 PF17760 UvrA interaction domain AFR_24020 PF17755 UvrA DNA-binding domain AFR_24055 PF03459 TOBE domain AFR_24055 PF00005 ABC transporter AFR_24060 PF00486 Transcriptional regulatory protein, C terminal AFR_24060 PF00072 Response regulator receiver domain AFR_24065 PF00672 HAMP domain AFR_24065 PF00512 His Kinase A (phospho-acceptor) domain AFR_24065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24100 PF00455 DeoR C terminal sensor domain AFR_24100 PF08220 DeoR-like helix-turn-helix domain AFR_24115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24115 PF08446 PAS fold AFR_24115 PF00360 Phytochrome region AFR_24115 PF00512 His Kinase A (phospho-acceptor) domain AFR_24115 PF01590 GAF domain AFR_24120 PF02652 L-lactate permease AFR_24150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_24150 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_24165 PF13407 Periplasmic binding protein domain AFR_24175 PF00072 Response regulator receiver domain AFR_24175 PF00512 His Kinase A (phospho-acceptor) domain AFR_24175 PF08448 PAS fold AFR_24175 PF13188 PAS domain AFR_24175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24190 PF11896 Domain of unknown function (DUF3416) AFR_24195 PF00196 Bacterial regulatory proteins, luxR family AFR_24195 PF00072 Response regulator receiver domain AFR_24205 PF12704 MacB-like periplasmic core domain AFR_24205 PF02687 FtsX-like permease family AFR_24205 PF00005 ABC transporter AFR_24215 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_24220 PF00440 Bacterial regulatory proteins, tetR family AFR_24220 PF08361 MAATS-type transcriptional repressor, C-terminal region AFR_24230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_24230 PF00005 ABC transporter AFR_24235 PF00528 Binding-protein-dependent transport system inner membrane component AFR_24240 PF00528 Binding-protein-dependent transport system inner membrane component AFR_24240 PF12911 N-terminal TM domain of oligopeptide transport permease C AFR_24245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_24280 PF04228 Putative neutral zinc metallopeptidase AFR_24290 PF00672 HAMP domain AFR_24290 PF07228 Stage II sporulation protein E (SpoIIE) AFR_24305 PF17827 PrmC N-terminal domain AFR_24305 PF05175 Methyltransferase small domain AFR_24310 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_24315 PF13823 Alcohol dehydrogenase GroES-associated AFR_24315 PF08240 Alcohol dehydrogenase GroES-like domain AFR_24315 PF00107 Zinc-binding dehydrogenase AFR_24335 PF00440 Bacterial regulatory proteins, tetR family AFR_24340 PF00106 short chain dehydrogenase AFR_24370 PF00107 Zinc-binding dehydrogenase AFR_24370 PF08240 Alcohol dehydrogenase GroES-like domain AFR_24385 PF00005 ABC transporter AFR_24385 PF08402 TOBE domain AFR_24390 PF00528 Binding-protein-dependent transport system inner membrane component AFR_24400 PF00072 Response regulator receiver domain AFR_24400 PF00486 Transcriptional regulatory protein, C terminal AFR_24405 PF08448 PAS fold AFR_24405 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB AFR_24405 PF00512 His Kinase A (phospho-acceptor) domain AFR_24405 PF00672 HAMP domain AFR_24405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24410 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AFR_24415 PF00005 ABC transporter AFR_24420 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFR_24425 PF00528 Binding-protein-dependent transport system inner membrane component AFR_24435 PF03795 YCII-related domain AFR_24440 PF08281 Sigma-70, region 4 AFR_24440 PF04542 Sigma-70 region 2 AFR_24445 PF01209 ubiE/COQ5 methyltransferase family AFR_24465 PF00484 Carbonic anhydrase AFR_24470 PF00890 FAD binding domain AFR_24480 PF03734 L,D-transpeptidase catalytic domain AFR_24480 PF17964 Bacterial Ig domain AFR_24490 PF07690 Major Facilitator Superfamily AFR_24510 PF00356 Bacterial regulatory proteins, lacI family AFR_24520 PF03707 Bacterial signalling protein N terminal repeat AFR_24520 PF00990 Diguanylate cyclase, GGDEF domain AFR_24520 PF00563 EAL domain AFR_24525 PF00009 Elongation factor Tu GTP binding domain AFR_24525 PF03764 Elongation factor G, domain IV AFR_24525 PF00679 Elongation factor G C-terminus AFR_24530 PF00583 Acetyltransferase (GNAT) family AFR_24540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_24540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_24545 PF03773 Predicted permease AFR_24580 PF00270 DEAD/DEAH box helicase AFR_24580 PF03880 DbpA RNA binding domain AFR_24580 PF00271 Helicase conserved C-terminal domain AFR_24595 PF07730 Histidine kinase AFR_24595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24600 PF00196 Bacterial regulatory proteins, luxR family AFR_24600 PF00072 Response regulator receiver domain AFR_24605 PF07519 Tannase and feruloyl esterase AFR_24620 PF08281 Sigma-70, region 4 AFR_24620 PF04542 Sigma-70 region 2 AFR_24645 PF00248 Aldo/keto reductase family AFR_24665 PF00128 Alpha amylase, catalytic domain AFR_24665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_24670 PF07690 Major Facilitator Superfamily AFR_24675 PF13847 Methyltransferase domain AFR_24680 PF17864 RuvB AAA lid domain AFR_24680 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFR_24680 PF05491 RuvB C-terminal winged helix domain AFR_24700 PF05139 Erythromycin esterase AFR_24700 PF00156 Phosphoribosyl transferase domain AFR_24710 PF08281 Sigma-70, region 4 AFR_24710 PF04542 Sigma-70 region 2 AFR_24740 PF00553 Cellulose binding domain AFR_24740 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_24740 PF00041 Fibronectin type III domain AFR_24760 PF00703 Glycosyl hydrolases family 2 AFR_24760 PF16353 Domain of unknown function(DUF4981) AFR_24760 PF02929 Beta galactosidase small chain AFR_24760 PF02837 Glycosyl hydrolases family 2, sugar binding domain AFR_24760 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AFR_24770 PF01738 Dienelactone hydrolase family AFR_24805 PF12680 SnoaL-like domain AFR_24805 PF08281 Sigma-70, region 4 AFR_24805 PF04542 Sigma-70 region 2 AFR_24815 PF00563 EAL domain AFR_24815 PF00990 Diguanylate cyclase, GGDEF domain AFR_24815 PF03707 Bacterial signalling protein N terminal repeat AFR_24820 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFR_24820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_24825 PF08447 PAS fold AFR_24825 PF08448 PAS fold AFR_24825 PF00990 Diguanylate cyclase, GGDEF domain AFR_24825 PF00563 EAL domain AFR_24830 PF07730 Histidine kinase AFR_24830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24830 PF05231 MASE1 AFR_24835 PF00196 Bacterial regulatory proteins, luxR family AFR_24835 PF00072 Response regulator receiver domain AFR_24840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFR_24840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFR_24840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFR_24840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFR_24845 PF04234 CopC domain AFR_24855 PF03883 Peroxide stress protein YaaA AFR_24860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFR_24870 PF03176 MMPL family AFR_24875 PF00106 short chain dehydrogenase AFR_24880 PF01638 HxlR-like helix-turn-helix AFR_24895 PF05139 Erythromycin esterase AFR_24905 PF04434 SWIM zinc finger AFR_24910 PF12419 SNF2 Helicase protein AFR_24910 PF00271 Helicase conserved C-terminal domain AFR_24910 PF00176 SNF2 family N-terminal domain AFR_24935 PF01047 MarR family AFR_24940 PF07690 Major Facilitator Superfamily AFR_24945 PF01820 D-ala D-ala ligase N-terminus AFR_24945 PF07478 D-ala D-ala ligase C-terminus AFR_24960 PF13520 Amino acid permease AFR_24975 PF00069 Protein kinase domain AFR_25000 PF00535 Glycosyl transferase family 2 AFR_25025 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFR_25025 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFR_25050 PF00149 Calcineurin-like phosphoesterase AFR_25060 PF00664 ABC transporter transmembrane region AFR_25060 PF00005 ABC transporter AFR_25065 PF00595 PDZ domain AFR_25070 PF00753 Metallo-beta-lactamase superfamily AFR_25090 PF00356 Bacterial regulatory proteins, lacI family AFR_25105 PF13191 AAA ATPase domain AFR_25105 PF00211 Adenylate and Guanylate cyclase catalytic domain AFR_25110 PF04542 Sigma-70 region 2 AFR_25110 PF04545 Sigma-70, region 4 AFR_25115 PF02016 LD-carboxypeptidase N-terminal domain AFR_25115 PF17676 LD-carboxypeptidase C-terminal domain AFR_25120 PF17853 GGDEF-like domain AFR_25120 PF13556 PucR C-terminal helix-turn-helix domain AFR_25125 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_25125 PF00175 Oxidoreductase NAD-binding domain AFR_25125 PF00970 Oxidoreductase FAD-binding domain AFR_25130 PF00487 Fatty acid desaturase AFR_25135 PF01565 FAD binding domain AFR_25135 PF04030 D-arabinono-1,4-lactone oxidase AFR_25140 PF04542 Sigma-70 region 2 AFR_25140 PF08281 Sigma-70, region 4 AFR_25140 PF12680 SnoaL-like domain AFR_25150 PF00743 Flavin-binding monooxygenase-like AFR_25160 PF02705 K+ potassium transporter AFR_25170 PF01139 tRNA-splicing ligase RtcB AFR_25185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_25185 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_25185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_25185 PF12806 Acetyl-CoA dehydrogenase C-terminal like AFR_25200 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AFR_25200 PF02018 Carbohydrate binding domain AFR_25205 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain AFR_25205 PF04616 Glycosyl hydrolases family 43 AFR_25210 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_25210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_25255 PF01232 Mannitol dehydrogenase Rossmann domain AFR_25255 PF08125 Mannitol dehydrogenase C-terminal domain AFR_25260 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_25260 PF13378 Enolase C-terminal domain-like AFR_25265 PF02614 Glucuronate isomerase AFR_25270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_25270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_25275 PF00356 Bacterial regulatory proteins, lacI family AFR_25285 PF00528 Binding-protein-dependent transport system inner membrane component AFR_25290 PF00528 Binding-protein-dependent transport system inner membrane component AFR_25320 PF00440 Bacterial regulatory proteins, tetR family AFR_25320 PF16859 Tetracyclin repressor-like, C-terminal domain AFR_25335 PF01494 FAD binding domain AFR_25340 PF00465 Iron-containing alcohol dehydrogenase AFR_25345 PF12833 Helix-turn-helix domain AFR_25350 PF00069 Protein kinase domain AFR_25350 PF03793 PASTA domain AFR_25355 PF00248 Aldo/keto reductase family AFR_25360 PF01385 Probable transposase AFR_25360 PF07282 Putative transposase DNA-binding domain AFR_25360 PF12323 Helix-turn-helix domain AFR_25375 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_25380 PF00404 Dockerin type I domain AFR_25380 PF00657 GDSL-like Lipase/Acylhydrolase AFR_25385 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AFR_25385 PF18416 N-acetylglucosamine binding protein domain 2 AFR_25390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFR_25400 PF00528 Binding-protein-dependent transport system inner membrane component AFR_25405 PF00528 Binding-protein-dependent transport system inner membrane component AFR_25430 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFR_25430 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFR_25435 PF00578 AhpC/TSA family AFR_25440 PF01740 STAS domain AFR_25450 PF01048 Phosphorylase superfamily AFR_25465 PF00005 ABC transporter AFR_25470 PF02653 Branched-chain amino acid transport system / permease component AFR_25485 PF00672 HAMP domain AFR_25485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_25485 PF00512 His Kinase A (phospho-acceptor) domain AFR_25495 PF00486 Transcriptional regulatory protein, C terminal AFR_25495 PF00072 Response regulator receiver domain AFR_25500 PF00480 ROK family AFR_25525 PF02653 Branched-chain amino acid transport system / permease component AFR_25530 PF00005 ABC transporter AFR_25535 PF13407 Periplasmic binding protein domain AFR_25540 PF11762 L-arabinose isomerase C-terminal domain AFR_25540 PF02610 L-arabinose isomerase AFR_25545 PF00596 Class II Aldolase and Adducin N-terminal domain AFR_25550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_25550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_25555 PF00356 Bacterial regulatory proteins, lacI family AFR_25565 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_25580 PF05726 Pirin C-terminal cupin domain AFR_25580 PF02678 Pirin AFR_25595 PF05230 MASE2 domain AFR_25595 PF00990 Diguanylate cyclase, GGDEF domain AFR_25600 PF00892 EamA-like transporter family AFR_25605 PF00005 ABC transporter AFR_25605 PF02687 FtsX-like permease family AFR_25605 PF12704 MacB-like periplasmic core domain AFR_25610 PF02687 FtsX-like permease family AFR_25610 PF12704 MacB-like periplasmic core domain AFR_25610 PF00005 ABC transporter AFR_25615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AFR_25645 PF00196 Bacterial regulatory proteins, luxR family AFR_25645 PF00072 Response regulator receiver domain AFR_25650 PF07730 Histidine kinase AFR_25650 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AFR_25650 PF00672 HAMP domain AFR_25650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_25660 PF12704 MacB-like periplasmic core domain AFR_25660 PF02687 FtsX-like permease family AFR_25660 PF00005 ABC transporter AFR_25670 PF01739 CheR methyltransferase, SAM binding domain AFR_25670 PF03705 CheR methyltransferase, all-alpha domain AFR_25680 PF00672 HAMP domain AFR_25680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_25685 PF02895 Signal transducing histidine kinase, homodimeric domain AFR_25685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_25685 PF07194 P2 response regulator binding domain AFR_25685 PF01584 CheW-like domain AFR_25685 PF01627 Hpt domain AFR_25690 PF01339 CheB methylesterase AFR_25690 PF00072 Response regulator receiver domain AFR_25695 PF01590 GAF domain AFR_25695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_25695 PF00512 His Kinase A (phospho-acceptor) domain AFR_25695 PF00360 Phytochrome region AFR_25695 PF08446 PAS fold AFR_25705 PF13302 Acetyltransferase (GNAT) domain AFR_25715 PF07859 alpha/beta hydrolase fold AFR_25720 PF02687 FtsX-like permease family AFR_25720 PF00005 ABC transporter AFR_25720 PF12704 MacB-like periplasmic core domain AFR_25725 PF12704 MacB-like periplasmic core domain AFR_25725 PF00005 ABC transporter AFR_25725 PF02687 FtsX-like permease family AFR_25735 PF00196 Bacterial regulatory proteins, luxR family AFR_25735 PF00072 Response regulator receiver domain AFR_25765 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AFR_25770 PF00990 Diguanylate cyclase, GGDEF domain AFR_25770 PF03707 Bacterial signalling protein N terminal repeat AFR_25770 PF00563 EAL domain AFR_25775 PF00563 EAL domain AFR_25780 PF01522 Polysaccharide deacetylase AFR_25790 PF00463 Isocitrate lyase family AFR_25800 PF01232 Mannitol dehydrogenase Rossmann domain AFR_25800 PF08125 Mannitol dehydrogenase C-terminal domain AFR_25805 PF03211 Pectate lyase AFR_25825 PF02018 Carbohydrate binding domain AFR_25825 PF02927 Cellulase N-terminal ig-like domain AFR_25825 PF00759 Glycosyl hydrolase family 9 AFR_25845 PF00012 Hsp70 protein AFR_25860 PF00350 Dynamin family AFR_25865 PF00350 Dynamin family AFR_25875 PF03466 LysR substrate binding domain AFR_25875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_25880 PF00107 Zinc-binding dehydrogenase AFR_25880 PF08240 Alcohol dehydrogenase GroES-like domain AFR_25885 PF01638 HxlR-like helix-turn-helix AFR_25910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_25910 PF18158 Adaptive response protein AidB N-terminal domain AFR_25910 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_25915 PF00563 EAL domain AFR_25915 PF00990 Diguanylate cyclase, GGDEF domain AFR_25915 PF03707 Bacterial signalling protein N terminal repeat AFR_25920 PF00990 Diguanylate cyclase, GGDEF domain AFR_25920 PF00563 EAL domain AFR_25920 PF13185 GAF domain AFR_25925 PF00486 Transcriptional regulatory protein, C terminal AFR_25925 PF03704 Bacterial transcriptional activator domain AFR_25925 PF00931 NB-ARC domain AFR_25940 PF01434 Peptidase family M41 AFR_25940 PF17862 AAA+ lid domain AFR_25940 PF00004 ATPase family associated with various cellular activities (AAA) AFR_25950 PF00486 Transcriptional regulatory protein, C terminal AFR_25950 PF03704 Bacterial transcriptional activator domain AFR_25950 PF00931 NB-ARC domain AFR_25955 PF00534 Glycosyl transferases group 1 AFR_25955 PF13439 Glycosyltransferase Family 4 AFR_25965 PF00795 Carbon-nitrogen hydrolase AFR_25970 PF00586 AIR synthase related protein, N-terminal domain AFR_25970 PF02769 AIR synthase related protein, C-terminal domain AFR_25970 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AFR_26005 PF00942 Cellulose binding domain AFR_26005 PF00553 Cellulose binding domain AFR_26005 PF00041 Fibronectin type III domain AFR_26005 PF00759 Glycosyl hydrolase family 9 AFR_26010 PF00553 Cellulose binding domain AFR_26010 PF01341 Glycosyl hydrolases family 6 AFR_26015 PF00196 Bacterial regulatory proteins, luxR family AFR_26015 PF00072 Response regulator receiver domain AFR_26020 PF07730 Histidine kinase AFR_26025 PF03176 MMPL family AFR_26055 PF01810 LysE type translocator AFR_26075 PF01547 Bacterial extracellular solute-binding protein AFR_26080 PF11838 ERAP1-like C-terminal domain AFR_26080 PF01433 Peptidase family M1 domain AFR_26085 PF06736 Protein of unknown function (DUF1211) AFR_26115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_26115 PF13378 Enolase C-terminal domain-like AFR_26120 PF00528 Binding-protein-dependent transport system inner membrane component AFR_26125 PF00528 Binding-protein-dependent transport system inner membrane component AFR_26130 PF01547 Bacterial extracellular solute-binding protein AFR_26140 PF16363 GDP-mannose 4,6 dehydratase AFR_26145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_26145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_26150 PF03328 HpcH/HpaI aldolase/citrate lyase family AFR_26195 PF00072 Response regulator receiver domain AFR_26195 PF00196 Bacterial regulatory proteins, luxR family AFR_26200 PF07730 Histidine kinase AFR_26200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_26205 PF12704 MacB-like periplasmic core domain AFR_26205 PF02687 FtsX-like permease family AFR_26205 PF00005 ABC transporter AFR_26215 PF00501 AMP-binding enzyme AFR_26215 PF13193 AMP-binding enzyme C-terminal domain AFR_26225 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_26235 PF00069 Protein kinase domain AFR_26235 PF16918 Protein kinase G tetratricopeptide repeat AFR_26235 PF16919 Protein kinase G rubredoxin domain AFR_26245 PF00092 von Willebrand factor type A domain AFR_26255 PF04978 Protein of unknown function (DUF664) AFR_26260 PF00404 Dockerin type I domain AFR_26260 PF00657 GDSL-like Lipase/Acylhydrolase AFR_26270 PF00459 Inositol monophosphatase family AFR_26280 PF12680 SnoaL-like domain AFR_26280 PF08281 Sigma-70, region 4 AFR_26280 PF04542 Sigma-70 region 2 AFR_26285 PF00544 Pectate lyase AFR_26295 PF01965 DJ-1/PfpI family AFR_26295 PF12833 Helix-turn-helix domain AFR_26310 PF00356 Bacterial regulatory proteins, lacI family AFR_26320 PF00271 Helicase conserved C-terminal domain AFR_26320 PF08148 DSHCT (NUC185) domain AFR_26320 PF00270 DEAD/DEAH box helicase AFR_26325 PF13419 Haloacid dehalogenase-like hydrolase AFR_26335 PF00781 Diacylglycerol kinase catalytic domain AFR_26340 PF00902 Sec-independent protein translocase protein (TatC) AFR_26345 PF02416 mttA/Hcf106 family AFR_26355 PF13280 WYL domain AFR_26360 PF13280 WYL domain AFR_26375 PF01596 O-methyltransferase AFR_26390 PF03136 Pup-ligase protein AFR_26395 PF16363 GDP-mannose 4,6 dehydratase AFR_26400 PF00227 Proteasome subunit AFR_26405 PF00227 Proteasome subunit AFR_26410 PF05639 Pup-like protein AFR_26415 PF03136 Pup-ligase protein AFR_26420 PF16450 Proteasomal ATPase OB C-terminal domain AFR_26420 PF00004 ATPase family associated with various cellular activities (AAA) AFR_26420 PF17758 Proteasomal ATPase OB N-terminal domain AFR_26435 PF08704 tRNA methyltransferase complex GCD14 subunit AFR_26440 PF02163 Peptidase family M50 AFR_26440 PF00571 CBS domain AFR_26450 PF00196 Bacterial regulatory proteins, luxR family AFR_26450 PF00072 Response regulator receiver domain AFR_26465 PF00005 ABC transporter AFR_26470 PF02687 FtsX-like permease family AFR_26470 PF12704 MacB-like periplasmic core domain AFR_26470 PF00005 ABC transporter AFR_26535 PF13419 Haloacid dehalogenase-like hydrolase AFR_26545 PF01810 LysE type translocator AFR_26560 PF00072 Response regulator receiver domain AFR_26560 PF00196 Bacterial regulatory proteins, luxR family AFR_26565 PF02310 B12 binding domain AFR_26565 PF02607 B12 binding domain AFR_26565 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFR_26565 PF00809 Pterin binding enzyme AFR_26565 PF02574 Homocysteine S-methyltransferase AFR_26595 PF00005 ABC transporter AFR_26620 PF01047 MarR family AFR_26625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFR_26630 PF01406 tRNA synthetases class I (C) catalytic domain AFR_26645 PF00300 Histidine phosphatase superfamily (branch 1) AFR_26645 PF00106 short chain dehydrogenase AFR_26650 PF00296 Luciferase-like monooxygenase AFR_26655 PF00248 Aldo/keto reductase family AFR_26680 PF01546 Peptidase family M20/M25/M40 AFR_26680 PF07687 Peptidase dimerisation domain AFR_26690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_26690 PF03466 LysR substrate binding domain AFR_26695 PF17871 AAA lid domain AFR_26695 PF07724 AAA domain (Cdc48 subfamily) AFR_26695 PF00004 ATPase family associated with various cellular activities (AAA) AFR_26695 PF02861 Clp amino terminal domain, pathogenicity island component AFR_26695 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_26710 PF01580 FtsK/SpoIIIE family AFR_26710 PF12538 DNA transporter AFR_26755 PF00072 Response regulator receiver domain AFR_26755 PF00486 Transcriptional regulatory protein, C terminal AFR_26765 PF12796 Ankyrin repeats (3 copies) AFR_26765 PF00023 Ankyrin repeat AFR_26775 PF07517 SecA DEAD-like domain AFR_26775 PF01043 SecA preprotein cross-linking domain AFR_26775 PF07516 SecA Wing and Scaffold domain AFR_26780 PF00664 ABC transporter transmembrane region AFR_26780 PF00005 ABC transporter AFR_26790 PF00072 Response regulator receiver domain AFR_26790 PF01339 CheB methylesterase AFR_26795 PF01739 CheR methyltransferase, SAM binding domain AFR_26795 PF03705 CheR methyltransferase, all-alpha domain AFR_26795 PF08448 PAS fold AFR_26795 PF01339 CheB methylesterase AFR_26805 PF04542 Sigma-70 region 2 AFR_26805 PF04539 Sigma-70 region 3 AFR_26805 PF04545 Sigma-70, region 4 AFR_26840 PF00561 alpha/beta hydrolase fold AFR_26875 PF00196 Bacterial regulatory proteins, luxR family AFR_26875 PF00072 Response regulator receiver domain AFR_26880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_26880 PF07730 Histidine kinase AFR_26915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFR_26915 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFR_26925 PF07728 AAA domain (dynein-related subfamily) AFR_26925 PF17863 AAA lid domain AFR_26925 PF13519 von Willebrand factor type A domain AFR_26930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_26930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_26940 PF04539 Sigma-70 region 3 AFR_26940 PF04545 Sigma-70, region 4 AFR_26940 PF04542 Sigma-70 region 2 AFR_26950 PF01022 Bacterial regulatory protein, arsR family AFR_26955 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFR_26955 PF03033 Glycosyltransferase family 28 N-terminal domain AFR_26960 PF00285 Citrate synthase, C-terminal domain AFR_26970 PF00563 EAL domain AFR_26970 PF00990 Diguanylate cyclase, GGDEF domain AFR_26970 PF13426 PAS domain AFR_26975 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_27010 PF00563 EAL domain AFR_27010 PF03707 Bacterial signalling protein N terminal repeat AFR_27010 PF00990 Diguanylate cyclase, GGDEF domain AFR_27010 PF13188 PAS domain AFR_27015 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AFR_27015 PF00271 Helicase conserved C-terminal domain AFR_27015 PF04408 Helicase associated domain (HA2) AFR_27015 PF00270 DEAD/DEAH box helicase AFR_27015 PF11898 Domain of unknown function (DUF3418) AFR_27020 PF00248 Aldo/keto reductase family AFR_27025 PF00072 Response regulator receiver domain AFR_27025 PF01627 Hpt domain AFR_27025 PF00512 His Kinase A (phospho-acceptor) domain AFR_27025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_27030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_27030 PF00512 His Kinase A (phospho-acceptor) domain AFR_27030 PF00672 HAMP domain AFR_27030 PF18698 Histidine kinase sensor domain AFR_27030 PF00989 PAS fold AFR_27035 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AFR_27035 PF10135 Rod binding protein AFR_27050 PF04539 Sigma-70 region 3 AFR_27050 PF04545 Sigma-70, region 4 AFR_27050 PF04542 Sigma-70 region 2 AFR_27055 PF00990 Diguanylate cyclase, GGDEF domain AFR_27055 PF00563 EAL domain AFR_27055 PF03707 Bacterial signalling protein N terminal repeat AFR_27060 PF00082 Subtilase family AFR_27065 PF00480 ROK family AFR_27080 PF04545 Sigma-70, region 4 AFR_27080 PF04542 Sigma-70 region 2 AFR_27095 PF11896 Domain of unknown function (DUF3416) AFR_27095 PF00128 Alpha amylase, catalytic domain AFR_27100 PF00128 Alpha amylase, catalytic domain AFR_27100 PF16657 Maltogenic Amylase, C-terminal domain AFR_27105 PF18085 Maltokinase N-terminal cap domain AFR_27110 PF00128 Alpha amylase, catalytic domain AFR_27110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_27110 PF02806 Alpha amylase, C-terminal all-beta domain AFR_27115 PF00583 Acetyltransferase (GNAT) family AFR_27135 PF13302 Acetyltransferase (GNAT) domain AFR_27150 PF00196 Bacterial regulatory proteins, luxR family AFR_27155 PF00107 Zinc-binding dehydrogenase AFR_27155 PF13823 Alcohol dehydrogenase GroES-associated AFR_27155 PF08240 Alcohol dehydrogenase GroES-like domain AFR_27160 PF09371 Tex-like protein N-terminal domain AFR_27160 PF00575 S1 RNA binding domain AFR_27160 PF17674 HHH domain AFR_27160 PF16921 Tex protein YqgF-like domain AFR_27165 PF00069 Protein kinase domain AFR_27165 PF00400 WD domain, G-beta repeat AFR_27170 PF03466 LysR substrate binding domain AFR_27170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_27190 PF12804 MobA-like NTP transferase domain AFR_27200 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_27200 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFR_27205 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_27205 PF01799 [2Fe-2S] binding domain AFR_27210 PF00941 FAD binding domain in molybdopterin dehydrogenase AFR_27210 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFR_27215 PF00196 Bacterial regulatory proteins, luxR family AFR_27215 PF00072 Response regulator receiver domain AFR_27220 PF07730 Histidine kinase AFR_27220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_27230 PF00400 WD domain, G-beta repeat AFR_27230 PF00069 Protein kinase domain AFR_27235 PF02683 Cytochrome C biogenesis protein transmembrane region AFR_27245 PF10531 SLBB domain AFR_27245 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFR_27245 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_27295 PF03551 Transcriptional regulator PadR-like family AFR_27295 PF13847 Methyltransferase domain AFR_27300 PF00041 Fibronectin type III domain AFR_27300 PF00553 Cellulose binding domain AFR_27300 PF01341 Glycosyl hydrolases family 6 AFR_27330 PF00703 Glycosyl hydrolases family 2 AFR_27330 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AFR_27330 PF02837 Glycosyl hydrolases family 2, sugar binding domain AFR_27345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_27345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_27345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_27350 PF00563 EAL domain AFR_27350 PF00990 Diguanylate cyclase, GGDEF domain AFR_27350 PF03707 Bacterial signalling protein N terminal repeat AFR_27355 PF00356 Bacterial regulatory proteins, lacI family AFR_27355 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AFR_27365 PF00528 Binding-protein-dependent transport system inner membrane component AFR_27370 PF00528 Binding-protein-dependent transport system inner membrane component AFR_27380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_27380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_27405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_27405 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_27405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_27410 PF02091 Glycyl-tRNA synthetase alpha subunit AFR_27410 PF02092 Glycyl-tRNA synthetase beta subunit AFR_27420 PF01494 FAD binding domain AFR_27435 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_27440 PF00072 Response regulator receiver domain AFR_27440 PF00196 Bacterial regulatory proteins, luxR family AFR_27445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_27445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_27450 PF09339 IclR helix-turn-helix domain AFR_27450 PF01614 Bacterial transcriptional regulator AFR_27455 PF00230 Major intrinsic protein AFR_27460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_27460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_27465 PF01266 FAD dependent oxidoreductase AFR_27465 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AFR_27485 PF00440 Bacterial regulatory proteins, tetR family AFR_27495 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_27495 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_27520 PF00149 Calcineurin-like phosphoesterase AFR_27535 PF01384 Phosphate transporter family AFR_27540 PF00202 Aminotransferase class-III AFR_27545 PF00392 Bacterial regulatory proteins, gntR family AFR_27545 PF00155 Aminotransferase class I and II AFR_27550 PF00795 Carbon-nitrogen hydrolase AFR_27555 PF01979 Amidohydrolase family AFR_27560 PF00171 Aldehyde dehydrogenase family AFR_27565 PF00296 Luciferase-like monooxygenase AFR_27570 PF00528 Binding-protein-dependent transport system inner membrane component AFR_27575 PF00005 ABC transporter AFR_27580 PF00528 Binding-protein-dependent transport system inner membrane component AFR_27585 PF09084 NMT1/THI5 like AFR_27610 PF01590 GAF domain AFR_27610 PF00990 Diguanylate cyclase, GGDEF domain AFR_27610 PF00563 EAL domain AFR_27610 PF00360 Phytochrome region AFR_27625 PF01047 MarR family AFR_27625 PF00480 ROK family AFR_27630 PF13407 Periplasmic binding protein domain AFR_27635 PF02653 Branched-chain amino acid transport system / permease component AFR_27640 PF00005 ABC transporter AFR_27645 PF03176 MMPL family AFR_27660 PF00005 ABC transporter AFR_27660 PF00664 ABC transporter transmembrane region AFR_27665 PF00512 His Kinase A (phospho-acceptor) domain AFR_27665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_27665 PF00989 PAS fold AFR_27665 PF16736 Single Cache-like AFR_27670 PF00486 Transcriptional regulatory protein, C terminal AFR_27670 PF00072 Response regulator receiver domain AFR_27685 PF12704 MacB-like periplasmic core domain AFR_27685 PF00005 ABC transporter AFR_27685 PF02687 FtsX-like permease family AFR_27690 PF12704 MacB-like periplasmic core domain AFR_27690 PF02687 FtsX-like permease family AFR_27690 PF00005 ABC transporter AFR_27695 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_27725 PF16177 Acetyl-coenzyme A synthetase N-terminus AFR_27725 PF13193 AMP-binding enzyme C-terminal domain AFR_27725 PF00501 AMP-binding enzyme AFR_27730 PF02806 Alpha amylase, C-terminal all-beta domain AFR_27730 PF00128 Alpha amylase, catalytic domain AFR_27730 PF03714 Bacterial pullanase-associated domain AFR_27735 PF00128 Alpha amylase, catalytic domain AFR_27745 PF08021 Siderophore-interacting FAD-binding domain AFR_27745 PF04954 Siderophore-interacting protein AFR_27755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_27755 PF14759 Reductase C-terminal AFR_27775 PF00384 Molybdopterin oxidoreductase AFR_27775 PF01568 Molydopterin dinucleotide binding domain AFR_27780 PF00171 Aldehyde dehydrogenase family AFR_27785 PF00202 Aminotransferase class-III AFR_27795 PF01037 Lrp/AsnC ligand binding domain AFR_27800 PF00202 Aminotransferase class-III AFR_27805 PF01266 FAD dependent oxidoreductase AFR_27820 PF00069 Protein kinase domain AFR_27830 PF00392 Bacterial regulatory proteins, gntR family AFR_27865 PF00561 alpha/beta hydrolase fold AFR_27870 PF13302 Acetyltransferase (GNAT) domain AFR_27875 PF13439 Glycosyltransferase Family 4 AFR_27895 PF02515 CoA-transferase family III AFR_27915 PF00144 Beta-lactamase AFR_27930 PF00069 Protein kinase domain AFR_27935 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_27945 PF09107 Elongation factor SelB, winged helix AFR_27945 PF09106 Elongation factor SelB, winged helix AFR_27945 PF09105 Elongation factor SelB, winged helix AFR_27945 PF00009 Elongation factor Tu GTP binding domain AFR_27945 PF03144 Elongation factor Tu domain 2 AFR_27950 PF12390 Selenocysteine synthase N terminal AFR_27950 PF03841 L-seryl-tRNA selenium transferase AFR_27955 PF00586 AIR synthase related protein, N-terminal domain AFR_27955 PF02769 AIR synthase related protein, C-terminal domain AFR_27965 PF13247 4Fe-4S dicluster domain AFR_27965 PF09163 Formate dehydrogenase N, transmembrane AFR_27970 PF00384 Molybdopterin oxidoreductase AFR_27970 PF01568 Molydopterin dinucleotide binding domain AFR_27970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFR_27975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFR_27975 PF00384 Molybdopterin oxidoreductase AFR_27975 PF01568 Molydopterin dinucleotide binding domain AFR_27990 PF13193 AMP-binding enzyme C-terminal domain AFR_27990 PF00501 AMP-binding enzyme AFR_28005 PF00067 Cytochrome P450 AFR_28015 PF04471 Restriction endonuclease AFR_28015 PF14338 Mrr N-terminal domain AFR_28020 PF01494 FAD binding domain AFR_28035 PF03707 Bacterial signalling protein N terminal repeat AFR_28035 PF00563 EAL domain AFR_28035 PF00990 Diguanylate cyclase, GGDEF domain AFR_28045 PF03176 MMPL family AFR_28065 PF00144 Beta-lactamase AFR_28120 PF01119 DNA mismatch repair protein, C-terminal domain AFR_28120 PF08676 MutL C terminal dimerisation domain AFR_28145 PF00990 Diguanylate cyclase, GGDEF domain AFR_28145 PF13185 GAF domain AFR_28145 PF00563 EAL domain AFR_28180 PF05656 Protein of unknown function (DUF805) AFR_28190 PF13191 AAA ATPase domain AFR_28190 PF00069 Protein kinase domain AFR_28205 PF07726 ATPase family associated with various cellular activities (AAA) AFR_28205 PF17863 AAA lid domain AFR_28215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28215 PF08521 Two-component sensor kinase N-terminal AFR_28215 PF00512 His Kinase A (phospho-acceptor) domain AFR_28220 PF00486 Transcriptional regulatory protein, C terminal AFR_28220 PF00072 Response regulator receiver domain AFR_28225 PF00486 Transcriptional regulatory protein, C terminal AFR_28225 PF03704 Bacterial transcriptional activator domain AFR_28225 PF00931 NB-ARC domain AFR_28230 PF00196 Bacterial regulatory proteins, luxR family AFR_28235 PF00072 Response regulator receiver domain AFR_28235 PF00486 Transcriptional regulatory protein, C terminal AFR_28240 PF01638 HxlR-like helix-turn-helix AFR_28260 PF00942 Cellulose binding domain AFR_28260 PF00553 Cellulose binding domain AFR_28260 PF00759 Glycosyl hydrolase family 9 AFR_28260 PF00041 Fibronectin type III domain AFR_28265 PF12680 SnoaL-like domain AFR_28265 PF04542 Sigma-70 region 2 AFR_28265 PF08281 Sigma-70, region 4 AFR_28275 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AFR_28330 PF13673 Acetyltransferase (GNAT) domain AFR_28330 PF00583 Acetyltransferase (GNAT) family AFR_28340 PF00196 Bacterial regulatory proteins, luxR family AFR_28360 PF00171 Aldehyde dehydrogenase family AFR_28365 PF00067 Cytochrome P450 AFR_28375 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_28375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_28375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_28385 PF01039 Carboxyl transferase domain AFR_28390 PF00289 Biotin carboxylase, N-terminal domain AFR_28390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_28390 PF00364 Biotin-requiring enzyme AFR_28390 PF02785 Biotin carboxylase C-terminal domain AFR_28415 PF12706 Beta-lactamase superfamily domain AFR_28430 PF00884 Sulfatase AFR_28430 PF16347 Domain of unknown function (DUF4976) AFR_28475 PF04542 Sigma-70 region 2 AFR_28475 PF08281 Sigma-70, region 4 AFR_28475 PF12680 SnoaL-like domain AFR_28480 PF00990 Diguanylate cyclase, GGDEF domain AFR_28480 PF00563 EAL domain AFR_28480 PF01590 GAF domain AFR_28480 PF00360 Phytochrome region AFR_28485 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AFR_28485 PF10566 Glycoside hydrolase 97 AFR_28485 PF14508 Glycosyl-hydrolase 97 N-terminal AFR_28490 PF07995 Glucose / Sorbosone dehydrogenase AFR_28500 PF00512 His Kinase A (phospho-acceptor) domain AFR_28500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28500 PF00672 HAMP domain AFR_28505 PF00072 Response regulator receiver domain AFR_28505 PF00486 Transcriptional regulatory protein, C terminal AFR_28525 PF01872 RibD C-terminal domain AFR_28530 PF00881 Nitroreductase family AFR_28540 PF14765 Polyketide synthase dehydratase AFR_28540 PF00550 Phosphopantetheine attachment site AFR_28540 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_28540 PF00107 Zinc-binding dehydrogenase AFR_28540 PF16197 Ketoacyl-synthetase C-terminal extension AFR_28540 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_28540 PF00698 Acyl transferase domain AFR_28540 PF08240 Alcohol dehydrogenase GroES-like domain AFR_28540 PF08659 KR domain AFR_28550 PF12833 Helix-turn-helix domain AFR_28550 PF14525 AraC-binding-like domain AFR_28570 PF04679 ATP dependent DNA ligase C terminal region AFR_28570 PF01068 ATP dependent DNA ligase domain AFR_28570 PF13298 DNA polymerase Ligase (LigD) AFR_28575 PF00440 Bacterial regulatory proteins, tetR family AFR_28575 PF13977 BetI-type transcriptional repressor, C-terminal AFR_28580 PF12146 Serine aminopeptidase, S33 AFR_28595 PF02687 FtsX-like permease family AFR_28595 PF12704 MacB-like periplasmic core domain AFR_28600 PF12704 MacB-like periplasmic core domain AFR_28600 PF02687 FtsX-like permease family AFR_28600 PF00005 ABC transporter AFR_28610 PF00486 Transcriptional regulatory protein, C terminal AFR_28610 PF00072 Response regulator receiver domain AFR_28615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28615 PF00512 His Kinase A (phospho-acceptor) domain AFR_28615 PF00672 HAMP domain AFR_28620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28620 PF00672 HAMP domain AFR_28620 PF00512 His Kinase A (phospho-acceptor) domain AFR_28625 PF00072 Response regulator receiver domain AFR_28625 PF00486 Transcriptional regulatory protein, C terminal AFR_28635 PF00535 Glycosyl transferase family 2 AFR_28660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_28670 PF00561 alpha/beta hydrolase fold AFR_28695 PF00149 Calcineurin-like phosphoesterase AFR_28705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28705 PF08448 PAS fold AFR_28705 PF00512 His Kinase A (phospho-acceptor) domain AFR_28705 PF13188 PAS domain AFR_28705 PF00072 Response regulator receiver domain AFR_28710 PF00149 Calcineurin-like phosphoesterase AFR_28745 PF08240 Alcohol dehydrogenase GroES-like domain AFR_28745 PF13823 Alcohol dehydrogenase GroES-associated AFR_28745 PF00107 Zinc-binding dehydrogenase AFR_28760 PF00083 Sugar (and other) transporter AFR_28765 PF01757 Acyltransferase family AFR_28770 PF00196 Bacterial regulatory proteins, luxR family AFR_28770 PF00072 Response regulator receiver domain AFR_28775 PF07730 Histidine kinase AFR_28780 PF00069 Protein kinase domain AFR_28800 PF00072 Response regulator receiver domain AFR_28800 PF00196 Bacterial regulatory proteins, luxR family AFR_28805 PF00561 alpha/beta hydrolase fold AFR_28815 PF00005 ABC transporter AFR_28825 PF07730 Histidine kinase AFR_28830 PF00072 Response regulator receiver domain AFR_28830 PF00196 Bacterial regulatory proteins, luxR family AFR_28865 PF00561 alpha/beta hydrolase fold AFR_28870 PF00005 ABC transporter AFR_28880 PF08240 Alcohol dehydrogenase GroES-like domain AFR_28880 PF00107 Zinc-binding dehydrogenase AFR_28890 PF12146 Serine aminopeptidase, S33 AFR_28910 PF00440 Bacterial regulatory proteins, tetR family AFR_28920 PF00196 Bacterial regulatory proteins, luxR family AFR_28920 PF00072 Response regulator receiver domain AFR_28940 PF00561 alpha/beta hydrolase fold AFR_28950 PF13185 GAF domain AFR_28950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28950 PF07730 Histidine kinase AFR_28955 PF07730 Histidine kinase AFR_28955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28960 PF00196 Bacterial regulatory proteins, luxR family AFR_28960 PF00072 Response regulator receiver domain AFR_28965 PF00072 Response regulator receiver domain AFR_28965 PF00196 Bacterial regulatory proteins, luxR family AFR_28970 PF00561 alpha/beta hydrolase fold AFR_28975 PF00561 alpha/beta hydrolase fold AFR_28990 PF00561 alpha/beta hydrolase fold AFR_29000 PF00106 short chain dehydrogenase AFR_29005 PF01209 ubiE/COQ5 methyltransferase family AFR_29010 PF00561 alpha/beta hydrolase fold AFR_29050 PF09335 SNARE associated Golgi protein AFR_29065 PF00069 Protein kinase domain AFR_29065 PF00400 WD domain, G-beta repeat AFR_29070 PF00069 Protein kinase domain AFR_29070 PF00400 WD domain, G-beta repeat AFR_29080 PF08543 Phosphomethylpyrimidine kinase AFR_29085 PF07729 FCD domain AFR_29085 PF00392 Bacterial regulatory proteins, gntR family AFR_29090 PF00248 Aldo/keto reductase family AFR_29095 PF04909 Amidohydrolase AFR_29100 PF05336 L-rhamnose mutarotase AFR_29105 PF13378 Enolase C-terminal domain-like AFR_29105 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_29110 PF00528 Binding-protein-dependent transport system inner membrane component AFR_29125 PF08240 Alcohol dehydrogenase GroES-like domain AFR_29125 PF00107 Zinc-binding dehydrogenase AFR_29135 PF01638 HxlR-like helix-turn-helix AFR_29140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_29140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_29155 PF12833 Helix-turn-helix domain AFR_29155 PF12852 Cupin AFR_29160 PF00652 Ricin-type beta-trefoil lectin domain AFR_29160 PF00331 Glycosyl hydrolase family 10 AFR_29165 PF16499 Alpha galactosidase A AFR_29165 PF17801 Alpha galactosidase C-terminal beta sandwich domain AFR_29170 PF00652 Ricin-type beta-trefoil lectin domain AFR_29170 PF00331 Glycosyl hydrolase family 10 AFR_29180 PF00331 Glycosyl hydrolase family 10 AFR_29180 PF00652 Ricin-type beta-trefoil lectin domain AFR_29185 PF03422 Carbohydrate binding module (family 6) AFR_29185 PF04616 Glycosyl hydrolases family 43 AFR_29195 PF00652 Ricin-type beta-trefoil lectin domain AFR_29195 PF00331 Glycosyl hydrolase family 10 AFR_29220 PF00005 ABC transporter AFR_29220 PF00664 ABC transporter transmembrane region AFR_29230 PF03621 MbtH-like protein AFR_29235 PF00975 Thioesterase domain AFR_29235 PF00668 Condensation domain AFR_29235 PF13193 AMP-binding enzyme C-terminal domain AFR_29235 PF00550 Phosphopantetheine attachment site AFR_29235 PF00501 AMP-binding enzyme AFR_29240 PF12706 Beta-lactamase superfamily domain AFR_29250 PF01738 Dienelactone hydrolase family AFR_29265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_29265 PF03466 LysR substrate binding domain AFR_29275 PF00106 short chain dehydrogenase AFR_29280 PF00390 Malic enzyme, N-terminal domain AFR_29280 PF03949 Malic enzyme, NAD binding domain AFR_29285 PF00206 Lyase AFR_29285 PF10415 Fumarase C C-terminus AFR_29295 PF01425 Amidase AFR_29300 PF13460 NAD(P)H-binding AFR_29315 PF00561 alpha/beta hydrolase fold AFR_29320 PF12833 Helix-turn-helix domain AFR_29320 PF02311 AraC-like ligand binding domain AFR_29345 PF00440 Bacterial regulatory proteins, tetR family AFR_29355 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AFR_29355 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase AFR_29370 PF01494 FAD binding domain AFR_29375 PF07282 Putative transposase DNA-binding domain AFR_29375 PF01385 Probable transposase AFR_29375 PF12323 Helix-turn-helix domain AFR_29405 PF12704 MacB-like periplasmic core domain AFR_29405 PF02687 FtsX-like permease family AFR_29405 PF00005 ABC transporter AFR_29410 PF00005 ABC transporter AFR_29420 PF00486 Transcriptional regulatory protein, C terminal AFR_29420 PF00072 Response regulator receiver domain AFR_29425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_29425 PF00512 His Kinase A (phospho-acceptor) domain AFR_29425 PF00989 PAS fold AFR_29425 PF16736 Single Cache-like AFR_29435 PF00175 Oxidoreductase NAD-binding domain AFR_29435 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_29435 PF00970 Oxidoreductase FAD-binding domain AFR_29450 PF00486 Transcriptional regulatory protein, C terminal AFR_29450 PF03704 Bacterial transcriptional activator domain AFR_29450 PF00931 NB-ARC domain AFR_29455 PF01565 FAD binding domain AFR_29455 PF08031 Berberine and berberine like AFR_29465 PF01047 MarR family AFR_29480 PF05726 Pirin C-terminal cupin domain AFR_29480 PF02678 Pirin AFR_29500 PF05977 Transmembrane secretion effector AFR_29505 PF07859 alpha/beta hydrolase fold AFR_29565 PF13087 AAA domain AFR_29565 PF13086 AAA domain AFR_29565 PF13195 Protein of unknown function (DUF4011) AFR_29575 PF00270 DEAD/DEAH box helicase AFR_29575 PF00271 Helicase conserved C-terminal domain AFR_29575 PF08494 DEAD/H associated AFR_29620 PF01926 50S ribosome-binding GTPase AFR_29620 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFR_29625 PF02224 Cytidylate kinase AFR_29630 PF00849 RNA pseudouridylate synthase AFR_29630 PF01479 S4 domain AFR_29635 PF04079 Segregation and condensation complex subunit ScpB AFR_29640 PF02616 Segregation and condensation protein ScpA AFR_29645 PF01636 Phosphotransferase enzyme family AFR_29650 PF13419 Haloacid dehalogenase-like hydrolase AFR_29670 PF00293 NUDIX domain AFR_29670 PF13344 Haloacid dehalogenase-like hydrolase AFR_29675 PF01063 Amino-transferase class IV AFR_29680 PF13291 ACT domain AFR_29680 PF04607 Region found in RelA / SpoT proteins AFR_29680 PF02824 TGS domain AFR_29720 PF00684 DnaJ central domain AFR_29720 PF01556 DnaJ C terminal domain AFR_29720 PF00226 DnaJ domain AFR_29730 PF09594 Glycosyltransferase family 87 AFR_29740 PF08240 Alcohol dehydrogenase GroES-like domain AFR_29740 PF00107 Zinc-binding dehydrogenase AFR_29770 PF01047 MarR family AFR_29780 PF06029 AlkA N-terminal domain AFR_29780 PF02805 Metal binding domain of Ada AFR_29780 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_29780 PF12833 Helix-turn-helix domain AFR_29790 PF01467 Cytidylyltransferase-like AFR_29870 PF13614 AAA domain AFR_29875 PF02899 Phage integrase, N-terminal SAM-like domain AFR_29875 PF00589 Phage integrase family AFR_29880 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFR_29880 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFR_29885 PF00296 Luciferase-like monooxygenase AFR_29890 PF00293 NUDIX domain AFR_29895 PF06418 CTP synthase N-terminus AFR_29895 PF00117 Glutamine amidotransferase class-I AFR_29905 PF13439 Glycosyltransferase Family 4 AFR_29905 PF00534 Glycosyl transferases group 1 AFR_29920 PF11382 Copper transport outer membrane protein, MctB AFR_29930 PF12323 Helix-turn-helix domain AFR_29930 PF07282 Putative transposase DNA-binding domain AFR_29930 PF01385 Probable transposase AFR_29935 PF02463 RecF/RecN/SMC N terminal domain AFR_29940 PF01513 ATP-NAD kinase AFR_29945 PF01479 S4 domain AFR_29945 PF01728 FtsJ-like methyltransferase AFR_29965 PF00005 ABC transporter AFR_29975 PF07730 Histidine kinase AFR_29980 PF00196 Bacterial regulatory proteins, luxR family AFR_29980 PF00072 Response regulator receiver domain AFR_29985 PF18407 GCN5-related N-acetyltransferase like domain AFR_29985 PF13344 Haloacid dehalogenase-like hydrolase AFR_30000 PF00579 tRNA synthetases class I (W and Y) AFR_30015 PF03976 Polyphosphate kinase 2 (PPK2) AFR_30020 PF05191 Adenylate kinase, active site lid AFR_30055 PF02245 Methylpurine-DNA glycosylase (MPG) AFR_30070 PF07971 Glycosyl hydrolase family 92 AFR_30070 PF17678 Glycosyl hydrolase family 92 N-terminal domain AFR_30080 PF01256 Carbohydrate kinase AFR_30085 PF00300 Histidine phosphatase superfamily (branch 1) AFR_30100 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30105 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30110 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AFR_30115 PF02080 TrkA-C domain AFR_30120 PF07730 Histidine kinase AFR_30120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_30120 PF05231 MASE1 AFR_30125 PF00196 Bacterial regulatory proteins, luxR family AFR_30125 PF00072 Response regulator receiver domain AFR_30130 PF13244 Domain of unknown function (DUF4040) AFR_30130 PF00361 Proton-conducting membrane transporter AFR_30130 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AFR_30130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFR_30150 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AFR_30155 PF03334 Na+/H+ antiporter subunit AFR_30160 PF00149 Calcineurin-like phosphoesterase AFR_30180 PF13419 Haloacid dehalogenase-like hydrolase AFR_30185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_30185 PF03466 LysR substrate binding domain AFR_30190 PF01925 Sulfite exporter TauE/SafE AFR_30200 PF13614 AAA domain AFR_30205 PF14698 Argininosuccinate lyase C-terminal AFR_30205 PF00206 Lyase AFR_30210 PF00764 Arginosuccinate synthase AFR_30220 PF02863 Arginine repressor, C-terminal domain AFR_30220 PF01316 Arginine repressor, DNA binding domain AFR_30225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFR_30225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFR_30230 PF00202 Aminotransferase class-III AFR_30235 PF00696 Amino acid kinase family AFR_30240 PF01960 ArgJ family AFR_30245 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFR_30245 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFR_30285 PF17754 MftR C-terminal domain AFR_30285 PF00440 Bacterial regulatory proteins, tetR family AFR_30290 PF00067 Cytochrome P450 AFR_30305 PF00005 ABC transporter AFR_30310 PF07730 Histidine kinase AFR_30315 PF00072 Response regulator receiver domain AFR_30315 PF00196 Bacterial regulatory proteins, luxR family AFR_30325 PF14310 Fibronectin type III-like domain AFR_30325 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_30325 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_30340 PF00365 Phosphofructokinase AFR_30355 PF02687 FtsX-like permease family AFR_30355 PF00005 ABC transporter AFR_30355 PF12704 MacB-like periplasmic core domain AFR_30385 PF00392 Bacterial regulatory proteins, gntR family AFR_30390 PF00005 ABC transporter AFR_30390 PF13732 Domain of unknown function (DUF4162) AFR_30410 PF04151 Bacterial pre-peptidase C-terminal domain AFR_30410 PF04389 Peptidase family M28 AFR_30415 PF13649 Methyltransferase domain AFR_30425 PF04978 Protein of unknown function (DUF664) AFR_30440 PF01588 Putative tRNA binding domain AFR_30440 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AFR_30440 PF03147 Ferredoxin-fold anticodon binding domain AFR_30440 PF03484 tRNA synthetase B5 domain AFR_30440 PF03483 B3/4 domain AFR_30445 PF01409 tRNA synthetases class II core domain (F) AFR_30445 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFR_30450 PF00588 SpoU rRNA Methylase family AFR_30450 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFR_30455 PF00453 Ribosomal protein L20 AFR_30460 PF01632 Ribosomal protein L35 AFR_30465 PF05198 Translation initiation factor IF-3, N-terminal domain AFR_30465 PF00707 Translation initiation factor IF-3, C-terminal domain AFR_30475 PF08029 HisG, C-terminal domain AFR_30475 PF01634 ATP phosphoribosyltransferase AFR_30480 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFR_30490 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30495 PF00005 ABC transporter AFR_30500 PF07995 Glucose / Sorbosone dehydrogenase AFR_30505 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFR_30510 PF00925 GTP cyclohydrolase II AFR_30510 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFR_30515 PF00677 Lumazine binding domain AFR_30520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFR_30520 PF01872 RibD C-terminal domain AFR_30525 PF00486 Transcriptional regulatory protein, C terminal AFR_30525 PF00072 Response regulator receiver domain AFR_30530 PF00834 Ribulose-phosphate 3 epimerase family AFR_30545 PF01189 16S rRNA methyltransferase RsmB/F AFR_30545 PF01029 NusB family AFR_30550 PF00551 Formyl transferase AFR_30550 PF02911 Formyl transferase, C-terminal domain AFR_30555 PF01327 Polypeptide deformylase AFR_30560 PF00067 Cytochrome P450 AFR_30570 PF17764 3′ DNA-binding domain (3′BD) AFR_30575 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFR_30575 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFR_30575 PF02772 S-adenosylmethionine synthetase, central domain AFR_30580 PF04127 DNA / pantothenate metabolism flavoprotein AFR_30580 PF02441 Flavoprotein AFR_30585 PF01192 RNA polymerase Rpb6 AFR_30590 PF00625 Guanylate kinase AFR_30595 PF00416 Ribosomal protein S13/S18 AFR_30600 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFR_30605 PF00202 Aminotransferase class-III AFR_30610 PF01180 Dihydroorotate dehydrogenase AFR_30615 PF02142 MGS-like domain AFR_30615 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFR_30615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_30620 PF00117 Glutamine amidotransferase class-I AFR_30620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFR_30625 PF01979 Amidohydrolase family AFR_30630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFR_30630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFR_30635 PF00156 Phosphoribosyl transferase domain AFR_30645 PF01029 NusB family AFR_30650 PF09285 Elongation factor P, C-terminal AFR_30650 PF08207 Elongation factor P (EF-P) KOW-like domain AFR_30650 PF01132 Elongation factor P (EF-P) OB domain AFR_30655 PF01220 Dehydroquinase class II AFR_30660 PF01761 3-dehydroquinate synthase AFR_30665 PF02861 Clp amino terminal domain, pathogenicity island component AFR_30680 PF01202 Shikimate kinase AFR_30685 PF01264 Chorismate synthase AFR_30690 PF07690 Major Facilitator Superfamily AFR_30695 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AFR_30695 PF01488 Shikimate / quinate 5-dehydrogenase AFR_30695 PF08501 Shikimate dehydrogenase substrate binding domain AFR_30700 PF02618 YceG-like family AFR_30705 PF03652 Holliday junction resolvase AFR_30710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFR_30710 PF02272 DHHA1 domain AFR_30710 PF01411 tRNA synthetases class II (A) AFR_30740 PF00004 ATPase family associated with various cellular activities (AAA) AFR_30740 PF12002 MgsA AAA+ ATPase C terminal AFR_30740 PF16193 AAA C-terminal domain AFR_30775 PF00512 His Kinase A (phospho-acceptor) domain AFR_30775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_30775 PF00672 HAMP domain AFR_30780 PF00072 Response regulator receiver domain AFR_30780 PF00486 Transcriptional regulatory protein, C terminal AFR_30785 PF00005 ABC transporter AFR_30805 PF00152 tRNA synthetases class II (D, K and N) AFR_30805 PF01336 OB-fold nucleic acid binding domain AFR_30805 PF02938 GAD domain AFR_30830 PF07690 Major Facilitator Superfamily AFR_30860 PF00728 Glycosyl hydrolase family 20, catalytic domain AFR_30860 PF02838 Glycosyl hydrolase family 20, domain 2 AFR_30860 PF07691 PA14 domain AFR_30865 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30870 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30890 PF01979 Amidohydrolase family AFR_30895 PF01042 Endoribonuclease L-PSP AFR_30905 PF00547 Urease, gamma subunit AFR_30910 PF00699 Urease beta subunit AFR_30915 PF00449 Urease alpha-subunit, N-terminal domain AFR_30915 PF01979 Amidohydrolase family AFR_30920 PF01730 UreF AFR_30925 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFR_30930 PF01774 UreD urease accessory protein AFR_30935 PF04539 Sigma-70 region 3 AFR_30935 PF04545 Sigma-70, region 4 AFR_30935 PF04542 Sigma-70 region 2 AFR_30945 PF00069 Protein kinase domain AFR_30955 PF03575 Peptidase family S51 AFR_30960 PF05977 Transmembrane secretion effector AFR_30965 PF01638 HxlR-like helix-turn-helix AFR_30975 PF00005 ABC transporter AFR_30980 PF00005 ABC transporter AFR_30980 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFR_31005 PF00106 short chain dehydrogenase AFR_31010 PF00440 Bacterial regulatory proteins, tetR family AFR_31015 PF03129 Anticodon binding domain AFR_31015 PF13393 Histidyl-tRNA synthetase AFR_31020 PF00753 Metallo-beta-lactamase superfamily AFR_31030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFR_31035 PF13291 ACT domain AFR_31035 PF02824 TGS domain AFR_31035 PF04607 Region found in RelA / SpoT proteins AFR_31040 PF00156 Phosphoribosyl transferase domain AFR_31045 PF02355 Protein export membrane protein AFR_31045 PF07549 SecD/SecF GG Motif AFR_31050 PF07549 SecD/SecF GG Motif AFR_31050 PF02355 Protein export membrane protein AFR_31055 PF02699 Preprotein translocase subunit AFR_31060 PF05491 RuvB C-terminal winged helix domain AFR_31060 PF17864 RuvB AAA lid domain AFR_31060 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFR_31065 PF07499 RuvA, C-terminal domain AFR_31065 PF01330 RuvA N terminal domain AFR_31070 PF02075 Crossover junction endodeoxyribonuclease RuvC AFR_31080 PF01709 Transcriptional regulator AFR_31085 PF01174 SNO glutamine amidotransferase family AFR_31090 PF01680 SOR/SNZ family AFR_31095 PF01313 Bacterial export proteins, family 3 AFR_31105 PF13439 Glycosyltransferase Family 4 AFR_31110 PF03279 Bacterial lipid A biosynthesis acyltransferase AFR_31120 PF03144 Elongation factor Tu domain 2 AFR_31120 PF00679 Elongation factor G C-terminus AFR_31120 PF14492 Elongation Factor G, domain II AFR_31120 PF03764 Elongation factor G, domain IV AFR_31120 PF00009 Elongation factor Tu GTP binding domain AFR_31125 PF01494 FAD binding domain AFR_31135 PF13426 PAS domain AFR_31135 PF00563 EAL domain AFR_31135 PF00990 Diguanylate cyclase, GGDEF domain AFR_31145 PF01230 HIT domain AFR_31155 PF04542 Sigma-70 region 2 AFR_31155 PF04539 Sigma-70 region 3 AFR_31155 PF04545 Sigma-70, region 4 AFR_31165 PF03129 Anticodon binding domain AFR_31165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFR_31165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_31175 PF00486 Transcriptional regulatory protein, C terminal AFR_31175 PF00072 Response regulator receiver domain AFR_31180 PF00672 HAMP domain AFR_31180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_31180 PF00512 His Kinase A (phospho-acceptor) domain AFR_31195 PF00962 Adenosine/AMP deaminase AFR_31200 PF08241 Methyltransferase domain AFR_31205 PF00248 Aldo/keto reductase family AFR_31215 PF00313 'Cold-shock' DNA-binding domain AFR_31255 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_31255 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_31265 PF00296 Luciferase-like monooxygenase AFR_31270 PF00271 Helicase conserved C-terminal domain AFR_31270 PF00270 DEAD/DEAH box helicase AFR_31270 PF09382 RQC domain AFR_31270 PF16124 RecQ zinc-binding AFR_31270 PF00570 HRDC domain AFR_31300 PF00196 Bacterial regulatory proteins, luxR family AFR_31300 PF00072 Response regulator receiver domain AFR_31305 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AFR_31305 PF07730 Histidine kinase AFR_31305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_31305 PF00672 HAMP domain AFR_31315 PF00005 ABC transporter AFR_31320 PF13439 Glycosyltransferase Family 4 AFR_31320 PF00534 Glycosyl transferases group 1 AFR_31330 PF00106 short chain dehydrogenase AFR_31340 PF03631 Virulence factor BrkB AFR_31345 PF03364 Polyketide cyclase / dehydrase and lipid transport AFR_31410 PF07724 AAA domain (Cdc48 subfamily) AFR_31410 PF02861 Clp amino terminal domain, pathogenicity island component AFR_31410 PF17871 AAA lid domain AFR_31410 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_31410 PF00004 ATPase family associated with various cellular activities (AAA) AFR_31435 PF13419 Haloacid dehalogenase-like hydrolase AFR_31450 PF02678 Pirin AFR_31450 PF05726 Pirin C-terminal cupin domain AFR_31455 PF13460 NAD(P)H-binding AFR_31475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_31475 PF07730 Histidine kinase AFR_31475 PF05231 MASE1 AFR_31480 PF00072 Response regulator receiver domain AFR_31480 PF00196 Bacterial regulatory proteins, luxR family AFR_31500 PF03561 Allantoicase repeat AFR_31505 PF01979 Amidohydrolase family AFR_31530 PF01979 Amidohydrolase family AFR_31535 PF01014 Uricase AFR_31540 PF00576 HIUase/Transthyretin family AFR_31550 PF04408 Helicase associated domain (HA2) AFR_31550 PF00271 Helicase conserved C-terminal domain AFR_31550 PF00270 DEAD/DEAH box helicase AFR_31550 PF08482 ATP-dependent helicase C-terminal AFR_31555 PF03707 Bacterial signalling protein N terminal repeat AFR_31555 PF00563 EAL domain AFR_31555 PF00990 Diguanylate cyclase, GGDEF domain AFR_31575 PF01809 Putative membrane protein insertion efficiency factor AFR_31585 PF11941 Domain of unknown function (DUF3459) AFR_31585 PF00128 Alpha amylase, catalytic domain AFR_31590 PF00128 Alpha amylase, catalytic domain AFR_31595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_31595 PF00128 Alpha amylase, catalytic domain AFR_31605 PF00999 Sodium/hydrogen exchanger family AFR_31610 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFR_31610 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFR_31615 PF00535 Glycosyl transferase family 2 AFR_31650 PF00990 Diguanylate cyclase, GGDEF domain AFR_31650 PF00563 EAL domain AFR_31650 PF13188 PAS domain AFR_31650 PF03707 Bacterial signalling protein N terminal repeat AFR_31670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_31670 PF00672 HAMP domain AFR_31670 PF02203 Tar ligand binding domain homologue AFR_31695 PF02390 Putative methyltransferase AFR_31700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_31700 PF00512 His Kinase A (phospho-acceptor) domain AFR_31700 PF00989 PAS fold AFR_31700 PF00672 HAMP domain AFR_31705 PF05694 56kDa selenium binding protein (SBP56) AFR_31725 PF00005 ABC transporter AFR_31725 PF00664 ABC transporter transmembrane region AFR_31730 PF00005 ABC transporter AFR_31730 PF00664 ABC transporter transmembrane region AFR_31735 PF00561 alpha/beta hydrolase fold AFR_31740 PF00246 Zinc carboxypeptidase AFR_31745 PF07995 Glucose / Sorbosone dehydrogenase AFR_31765 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_31765 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFR_31770 PF10566 Glycoside hydrolase 97 AFR_31770 PF14508 Glycosyl-hydrolase 97 N-terminal AFR_31770 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AFR_31780 PF01494 FAD binding domain AFR_31785 PF13419 Haloacid dehalogenase-like hydrolase AFR_31790 PF00296 Luciferase-like monooxygenase AFR_31795 PF00535 Glycosyl transferase family 2 AFR_31800 PF00296 Luciferase-like monooxygenase AFR_31810 PF13581 Histidine kinase-like ATPase domain AFR_31825 PF00296 Luciferase-like monooxygenase AFR_31840 PF00768 D-alanyl-D-alanine carboxypeptidase AFR_31840 PF07943 Penicillin-binding protein 5, C-terminal domain AFR_31860 PF04542 Sigma-70 region 2 AFR_31860 PF04539 Sigma-70 region 3 AFR_31860 PF04545 Sigma-70, region 4 AFR_31865 PF13538 UvrD-like helicase C-terminal domain AFR_31875 PF04542 Sigma-70 region 2 AFR_31875 PF04539 Sigma-70 region 3 AFR_31875 PF04545 Sigma-70, region 4 AFR_31880 PF00270 DEAD/DEAH box helicase AFR_31880 PF00271 Helicase conserved C-terminal domain AFR_31895 PF00196 Bacterial regulatory proteins, luxR family AFR_31895 PF00072 Response regulator receiver domain AFR_31925 PF02146 Sir2 family AFR_31930 PF00356 Bacterial regulatory proteins, lacI family AFR_31935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_31940 PF00005 ABC transporter AFR_31940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_31945 PF00528 Binding-protein-dependent transport system inner membrane component AFR_31950 PF12911 N-terminal TM domain of oligopeptide transport permease C AFR_31950 PF00528 Binding-protein-dependent transport system inner membrane component AFR_31955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_31955 PF00005 ABC transporter AFR_31960 PF00232 Glycosyl hydrolase family 1 AFR_31965 PF00480 ROK family AFR_31980 PF00990 Diguanylate cyclase, GGDEF domain AFR_31980 PF00563 EAL domain AFR_31980 PF03707 Bacterial signalling protein N terminal repeat AFR_31990 PF00248 Aldo/keto reductase family AFR_32025 PF03989 DNA gyrase C-terminal domain, beta-propeller AFR_32025 PF00521 DNA gyrase/topoisomerase IV, subunit A AFR_32030 PF01751 Toprim domain AFR_32030 PF00204 DNA gyrase B AFR_32030 PF00986 DNA gyrase B subunit, carboxyl terminus AFR_32030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_32045 PF00211 Adenylate and Guanylate cyclase catalytic domain AFR_32045 PF00672 HAMP domain AFR_32050 PF00196 Bacterial regulatory proteins, luxR family AFR_32050 PF00072 Response regulator receiver domain AFR_32065 PF00672 HAMP domain AFR_32065 PF00512 His Kinase A (phospho-acceptor) domain AFR_32065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_32070 PF00072 Response regulator receiver domain AFR_32070 PF00486 Transcriptional regulatory protein, C terminal AFR_32075 PF04542 Sigma-70 region 2 AFR_32075 PF08281 Sigma-70, region 4 AFR_32080 PF03795 YCII-related domain AFR_32120 PF00356 Bacterial regulatory proteins, lacI family AFR_32130 PF01699 Sodium/calcium exchanger protein AFR_32135 PF01494 FAD binding domain AFR_32150 PF00196 Bacterial regulatory proteins, luxR family AFR_32155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_32155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_32155 PF01842 ACT domain AFR_32170 PF13409 Glutathione S-transferase, N-terminal domain AFR_32180 PF01047 MarR family AFR_32185 PF00892 EamA-like transporter family AFR_32195 PF17926 Tetracyclin repressor-like, C-terminal domain AFR_32195 PF00440 Bacterial regulatory proteins, tetR family AFR_32200 PF00106 short chain dehydrogenase AFR_32210 PF07728 AAA domain (dynein-related subfamily) AFR_32225 PF05762 VWA domain containing CoxE-like protein AFR_32230 PF00795 Carbon-nitrogen hydrolase AFR_32230 PF02540 NAD synthase AFR_32240 PF01648 4'-phosphopantetheinyl transferase superfamily AFR_32240 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AFR_32245 PF12697 Alpha/beta hydrolase family AFR_32250 PF01541 GIY-YIG catalytic domain AFR_32250 PF02151 UvrB/uvrC motif AFR_32250 PF08459 UvrC Helix-hairpin-helix N-terminal AFR_32260 PF04075 F420H(2)-dependent quinone reductase AFR_32265 PF04075 F420H(2)-dependent quinone reductase AFR_32275 PF00005 ABC transporter AFR_32280 PF01032 FecCD transport family AFR_32285 PF01032 FecCD transport family AFR_32330 PF00709 Adenylosuccinate synthetase AFR_32355 PF02156 Glycosyl hydrolase family 26 AFR_32355 PF03425 Carbohydrate binding domain (family 11) AFR_32375 PF08281 Sigma-70, region 4 AFR_32375 PF04542 Sigma-70 region 2 AFR_32385 PF00174 Oxidoreductase molybdopterin binding domain AFR_32390 PF00175 Oxidoreductase NAD-binding domain AFR_32390 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_32390 PF00970 Oxidoreductase FAD-binding domain AFR_32405 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_32410 PF00106 short chain dehydrogenase AFR_32415 PF00440 Bacterial regulatory proteins, tetR family AFR_32430 PF03144 Elongation factor Tu domain 2 AFR_32430 PF00009 Elongation factor Tu GTP binding domain AFR_32430 PF03143 Elongation factor Tu C-terminal domain AFR_32440 PF00069 Protein kinase domain AFR_32450 PF08448 PAS fold AFR_32450 PF13188 PAS domain AFR_32450 PF00072 Response regulator receiver domain AFR_32450 PF00512 His Kinase A (phospho-acceptor) domain AFR_32450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_32485 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFR_32485 PF14572 Phosphoribosyl synthetase-associated domain AFR_32490 PF00005 ABC transporter AFR_32500 PF00005 ABC transporter AFR_32515 PF01544 CorA-like Mg2+ transporter protein AFR_32545 PF07584 Aerotolerance regulator N-terminal AFR_32545 PF13519 von Willebrand factor type A domain AFR_32550 PF13519 von Willebrand factor type A domain AFR_32550 PF07584 Aerotolerance regulator N-terminal AFR_32555 PF01882 Protein of unknown function DUF58 AFR_32560 PF07726 ATPase family associated with various cellular activities (AAA) AFR_32560 PF17863 AAA lid domain AFR_32565 PF13180 PDZ domain AFR_32565 PF17820 PDZ domain AFR_32570 PF00668 Condensation domain AFR_32570 PF00550 Phosphopantetheine attachment site AFR_32570 PF00501 AMP-binding enzyme AFR_32570 PF13193 AMP-binding enzyme C-terminal domain AFR_32570 PF00975 Thioesterase domain AFR_32575 PF07687 Peptidase dimerisation domain AFR_32575 PF01546 Peptidase family M20/M25/M40 AFR_32590 PF00722 Glycosyl hydrolases family 16 AFR_32615 PF04686 Streptomyces sporulation and cell division protein, SsgA AFR_32625 PF02082 Transcriptional regulator AFR_32645 PF00990 Diguanylate cyclase, GGDEF domain AFR_32645 PF00072 Response regulator receiver domain AFR_32655 PF01569 PAP2 superfamily AFR_32665 PF00781 Diacylglycerol kinase catalytic domain AFR_32665 PF02142 MGS-like domain AFR_32705 PF00041 Fibronectin type III domain AFR_32705 PF00704 Glycosyl hydrolases family 18 AFR_32715 PF00067 Cytochrome P450 AFR_32720 PF00089 Trypsin AFR_32720 PF02983 Alpha-lytic protease prodomain AFR_32730 PF00072 Response regulator receiver domain AFR_32730 PF00486 Transcriptional regulatory protein, C terminal AFR_32735 PF00296 Luciferase-like monooxygenase AFR_32745 PF00384 Molybdopterin oxidoreductase AFR_32745 PF01568 Molydopterin dinucleotide binding domain AFR_32750 PF00005 ABC transporter AFR_32760 PF00528 Binding-protein-dependent transport system inner membrane component AFR_32765 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_32765 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_32765 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_32770 PF00296 Luciferase-like monooxygenase AFR_32775 PF01613 Flavin reductase like domain AFR_32780 PF00296 Luciferase-like monooxygenase AFR_32785 PF03358 NADPH-dependent FMN reductase AFR_32815 PF00444 Ribosomal protein L36 AFR_32825 PF00072 Response regulator receiver domain AFR_32825 PF00196 Bacterial regulatory proteins, luxR family AFR_32850 PF01266 FAD dependent oxidoreductase AFR_32855 PF00132 Bacterial transferase hexapeptide (six repeats) AFR_32855 PF12804 MobA-like NTP transferase domain AFR_32875 PF13419 Haloacid dehalogenase-like hydrolase AFR_32880 PF00291 Pyridoxal-phosphate dependent enzyme AFR_32885 PF01965 DJ-1/PfpI family AFR_32905 PF00294 pfkB family carbohydrate kinase AFR_32910 PF01081 KDPG and KHG aldolase AFR_32930 PF00990 Diguanylate cyclase, GGDEF domain AFR_32930 PF03707 Bacterial signalling protein N terminal repeat AFR_32930 PF00563 EAL domain AFR_32940 PF04542 Sigma-70 region 2 AFR_32940 PF04545 Sigma-70, region 4 AFR_32950 PF00196 Bacterial regulatory proteins, luxR family AFR_32965 PF07690 Major Facilitator Superfamily AFR_32975 PF03073 TspO/MBR family AFR_32980 PF01494 FAD binding domain AFR_33015 PF13439 Glycosyltransferase Family 4 AFR_33030 PF00196 Bacterial regulatory proteins, luxR family AFR_33030 PF00072 Response regulator receiver domain AFR_33035 PF10282 Lactonase, 7-bladed beta-propeller AFR_33040 PF07730 Histidine kinase AFR_33050 PF08241 Methyltransferase domain AFR_33055 PF08448 PAS fold AFR_33055 PF00563 EAL domain AFR_33055 PF00990 Diguanylate cyclase, GGDEF domain AFR_33055 PF05231 MASE1 AFR_33055 PF13426 PAS domain AFR_33055 PF08447 PAS fold AFR_33060 PF00563 EAL domain AFR_33060 PF00990 Diguanylate cyclase, GGDEF domain AFR_33060 PF03707 Bacterial signalling protein N terminal repeat AFR_33065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_33065 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_33070 PF05368 NmrA-like family AFR_33080 PF00266 Aminotransferase class-V AFR_33085 PF03301 Tryptophan 2,3-dioxygenase AFR_33095 PF13411 MerR HTH family regulatory protein AFR_33105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_33105 PF00672 HAMP domain AFR_33120 PF00356 Bacterial regulatory proteins, lacI family AFR_33125 PF13416 Bacterial extracellular solute-binding protein AFR_33130 PF00528 Binding-protein-dependent transport system inner membrane component AFR_33135 PF00528 Binding-protein-dependent transport system inner membrane component AFR_33140 PF00128 Alpha amylase, catalytic domain AFR_33150 PF00041 Fibronectin type III domain AFR_33150 PF00704 Glycosyl hydrolases family 18 AFR_33155 PF00196 Bacterial regulatory proteins, luxR family AFR_33155 PF00072 Response regulator receiver domain AFR_33160 PF07730 Histidine kinase AFR_33170 PF01740 STAS domain AFR_33170 PF00916 Sulfate permease family AFR_33180 PF00391 PEP-utilising enzyme, mobile domain AFR_33180 PF02896 PEP-utilising enzyme, TIM barrel domain AFR_33180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFR_33185 PF14403 Circularly permuted ATP-grasp type 2 AFR_33185 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_33190 PF13537 Glutamine amidotransferase domain AFR_33190 PF00733 Asparagine synthase AFR_33195 PF00326 Prolyl oligopeptidase family AFR_33220 PF00512 His Kinase A (phospho-acceptor) domain AFR_33220 PF00989 PAS fold AFR_33220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_33225 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_33235 PF01513 ATP-NAD kinase AFR_33245 PF00313 'Cold-shock' DNA-binding domain AFR_33250 PF02983 Alpha-lytic protease prodomain AFR_33255 PF16483 Beta-1,3-glucanase AFR_33255 PF00652 Ricin-type beta-trefoil lectin domain AFR_33260 PF07690 Major Facilitator Superfamily AFR_33270 PF08021 Siderophore-interacting FAD-binding domain AFR_33270 PF04954 Siderophore-interacting protein AFR_33285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_33285 PF03459 TOBE domain AFR_33295 PF00528 Binding-protein-dependent transport system inner membrane component AFR_33300 PF00005 ABC transporter AFR_33300 PF03459 TOBE domain AFR_33325 PF00107 Zinc-binding dehydrogenase AFR_33325 PF08240 Alcohol dehydrogenase GroES-like domain AFR_33330 PF07730 Histidine kinase AFR_33335 PF00072 Response regulator receiver domain AFR_33335 PF00196 Bacterial regulatory proteins, luxR family AFR_33345 PF13302 Acetyltransferase (GNAT) domain AFR_33365 PF00575 S1 RNA binding domain AFR_33370 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFR_33380 PF04978 Protein of unknown function (DUF664) AFR_33390 PF00005 ABC transporter AFR_33400 PF01022 Bacterial regulatory protein, arsR family AFR_33440 PF00005 ABC transporter AFR_33440 PF00664 ABC transporter transmembrane region AFR_33445 PF00005 ABC transporter AFR_33445 PF00664 ABC transporter transmembrane region AFR_33465 PF00245 Alkaline phosphatase AFR_33470 PF02397 Bacterial sugar transferase AFR_33480 PF10531 SLBB domain AFR_33480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_33480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFR_33500 PF00196 Bacterial regulatory proteins, luxR family AFR_33510 PF00196 Bacterial regulatory proteins, luxR family AFR_33510 PF00072 Response regulator receiver domain AFR_33515 PF07730 Histidine kinase AFR_33525 PF13732 Domain of unknown function (DUF4162) AFR_33525 PF00005 ABC transporter AFR_33535 PF13732 Domain of unknown function (DUF4162) AFR_33535 PF00005 ABC transporter AFR_33540 PF00075 RNase H AFR_33550 PF00394 Multicopper oxidase AFR_33550 PF07731 Multicopper oxidase AFR_33550 PF07732 Multicopper oxidase AFR_33565 PF00296 Luciferase-like monooxygenase AFR_33570 PF06441 Epoxide hydrolase N terminus AFR_33580 PF01329 Pterin 4 alpha carbinolamine dehydratase AFR_33595 PF00196 Bacterial regulatory proteins, luxR family AFR_33640 PF00356 Bacterial regulatory proteins, lacI family AFR_33650 PF04679 ATP dependent DNA ligase C terminal region AFR_33650 PF01068 ATP dependent DNA ligase domain AFR_33650 PF13298 DNA polymerase Ligase (LigD) AFR_33660 PF07730 Histidine kinase AFR_33660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_33660 PF05384 Sensor protein DegS AFR_33665 PF00196 Bacterial regulatory proteins, luxR family AFR_33665 PF00072 Response regulator receiver domain AFR_33675 PF17678 Glycosyl hydrolase family 92 N-terminal domain AFR_33675 PF07971 Glycosyl hydrolase family 92 AFR_33680 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_33700 PF03707 Bacterial signalling protein N terminal repeat AFR_33700 PF00990 Diguanylate cyclase, GGDEF domain AFR_33700 PF00563 EAL domain AFR_33705 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_33705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_33740 PF11838 ERAP1-like C-terminal domain AFR_33740 PF01433 Peptidase family M1 domain AFR_33795 PF00722 Glycosyl hydrolases family 16 AFR_33805 PF00356 Bacterial regulatory proteins, lacI family AFR_33815 PF13460 NAD(P)H-binding AFR_33840 PF13411 MerR HTH family regulatory protein AFR_33850 PF00294 pfkB family carbohydrate kinase AFR_33855 PF00294 pfkB family carbohydrate kinase AFR_33860 PF01791 DeoC/LacD family aldolase AFR_33870 PF02653 Branched-chain amino acid transport system / permease component AFR_33875 PF00005 ABC transporter AFR_33880 PF02913 FAD linked oxidases, C-terminal domain AFR_33880 PF01565 FAD binding domain AFR_33890 PF00583 Acetyltransferase (GNAT) family AFR_33900 PF00296 Luciferase-like monooxygenase AFR_33910 PF00652 Ricin-type beta-trefoil lectin domain AFR_33910 PF16483 Beta-1,3-glucanase AFR_33920 PF00011 Hsp20/alpha crystallin family AFR_33930 PF00817 impB/mucB/samB family AFR_33930 PF11799 impB/mucB/samB family C-terminal domain AFR_33940 PF00672 HAMP domain AFR_33940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_33940 PF07730 Histidine kinase AFR_33945 PF00072 Response regulator receiver domain AFR_33945 PF01339 CheB methylesterase AFR_33950 PF07350 Protein of unknown function (DUF1479) AFR_33965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_33975 PF02514 CobN/Magnesium Chelatase AFR_33980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFR_33980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFR_33985 PF02570 Precorrin-8X methylmutase AFR_33990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_33995 PF02571 Precorrin-6x reductase CbiJ/CobK AFR_34000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_34005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_34010 PF00970 Oxidoreductase FAD-binding domain AFR_34010 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_34010 PF00175 Oxidoreductase NAD-binding domain AFR_34030 PF02899 Phage integrase, N-terminal SAM-like domain AFR_34030 PF00589 Phage integrase family AFR_34045 PF00072 Response regulator receiver domain AFR_34045 PF00196 Bacterial regulatory proteins, luxR family AFR_34055 PF03176 MMPL family AFR_34065 PF00384 Molybdopterin oxidoreductase AFR_34065 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFR_34065 PF01568 Molydopterin dinucleotide binding domain AFR_34075 PF00082 Subtilase family AFR_34095 PF17964 Bacterial Ig domain AFR_34095 PF03734 L,D-transpeptidase catalytic domain AFR_34105 PF08281 Sigma-70, region 4 AFR_34105 PF04542 Sigma-70 region 2 AFR_34115 PF00072 Response regulator receiver domain AFR_34115 PF00486 Transcriptional regulatory protein, C terminal AFR_34120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_34120 PF00512 His Kinase A (phospho-acceptor) domain AFR_34120 PF00672 HAMP domain AFR_34125 PF00561 alpha/beta hydrolase fold AFR_34130 PF01638 HxlR-like helix-turn-helix AFR_34140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_34140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFR_34145 PF01965 DJ-1/PfpI family AFR_34145 PF12833 Helix-turn-helix domain AFR_34155 PF00563 EAL domain AFR_34155 PF00990 Diguanylate cyclase, GGDEF domain AFR_34155 PF03707 Bacterial signalling protein N terminal repeat AFR_34165 PF00196 Bacterial regulatory proteins, luxR family AFR_34175 PF16338 Domain of unknown function (DUF4968) AFR_34175 PF13802 Galactose mutarotase-like AFR_34175 PF17137 Domain of unknown function (DUF5110) AFR_34175 PF01055 Glycosyl hydrolases family 31 AFR_34180 PF00005 ABC transporter AFR_34190 PF07730 Histidine kinase AFR_34190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_34195 PF00196 Bacterial regulatory proteins, luxR family AFR_34195 PF00072 Response regulator receiver domain AFR_34210 PF07730 Histidine kinase AFR_34210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_34215 PF00072 Response regulator receiver domain AFR_34215 PF00196 Bacterial regulatory proteins, luxR family AFR_34250 PF01726 LexA DNA binding domain AFR_34250 PF00717 Peptidase S24-like AFR_34255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_34255 PF00289 Biotin carboxylase, N-terminal domain AFR_34255 PF02785 Biotin carboxylase C-terminal domain AFR_34260 PF01406 tRNA synthetases class I (C) catalytic domain AFR_34260 PF09190 DALR domain AFR_34300 PF00069 Protein kinase domain AFR_34300 PF13360 PQQ-like domain AFR_34305 PF04545 Sigma-70, region 4 AFR_34305 PF04542 Sigma-70 region 2 AFR_34335 PF04545 Sigma-70, region 4 AFR_34335 PF04542 Sigma-70 region 2 AFR_34345 PF00392 Bacterial regulatory proteins, gntR family AFR_34345 PF07729 FCD domain AFR_34350 PF01425 Amidase AFR_34355 PF00857 Isochorismatase family AFR_34360 PF00857 Isochorismatase family AFR_34375 PF01494 FAD binding domain AFR_34385 PF00294 pfkB family carbohydrate kinase AFR_34390 PF00144 Beta-lactamase AFR_34400 PF06719 AraC-type transcriptional regulator N-terminus AFR_34400 PF12833 Helix-turn-helix domain AFR_34405 PF00248 Aldo/keto reductase family AFR_34410 PF09278 MerR, DNA binding AFR_34410 PF00376 MerR family regulatory protein AFR_34415 PF00085 Thioredoxin AFR_34425 PF00484 Carbonic anhydrase AFR_34430 PF00990 Diguanylate cyclase, GGDEF domain AFR_34445 PF00005 ABC transporter AFR_34450 PF00005 ABC transporter AFR_34455 PF13411 MerR HTH family regulatory protein AFR_34460 PF00440 Bacterial regulatory proteins, tetR family AFR_34465 PF00106 short chain dehydrogenase AFR_34540 PF05922 Peptidase inhibitor I9 AFR_34540 PF00082 Subtilase family AFR_34550 PF00082 Subtilase family AFR_34550 PF05922 Peptidase inhibitor I9 AFR_34560 PF08447 PAS fold AFR_34560 PF00563 EAL domain AFR_34560 PF00990 Diguanylate cyclase, GGDEF domain AFR_34560 PF08448 PAS fold AFR_34575 PF00005 ABC transporter AFR_34580 PF00528 Binding-protein-dependent transport system inner membrane component AFR_34590 PF00491 Arginase family AFR_34620 PF00072 Response regulator receiver domain AFR_34620 PF00196 Bacterial regulatory proteins, luxR family AFR_34630 PF00487 Fatty acid desaturase AFR_34635 PF00106 short chain dehydrogenase AFR_34645 PF00753 Metallo-beta-lactamase superfamily AFR_34650 PF00953 Glycosyl transferase family 4 AFR_34650 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFR_34655 PF00459 Inositol monophosphatase family AFR_34660 PF01569 PAP2 superfamily AFR_34665 PF00072 Response regulator receiver domain AFR_34665 PF00196 Bacterial regulatory proteins, luxR family AFR_34690 PF16177 Acetyl-coenzyme A synthetase N-terminus AFR_34690 PF00501 AMP-binding enzyme AFR_34690 PF13193 AMP-binding enzyme C-terminal domain AFR_34700 PF00528 Binding-protein-dependent transport system inner membrane component AFR_34705 PF00528 Binding-protein-dependent transport system inner membrane component AFR_34715 PF13580 SIS domain AFR_34720 PF01418 Helix-turn-helix domain, rpiR family AFR_34720 PF01380 SIS domain AFR_34735 PF13193 AMP-binding enzyme C-terminal domain AFR_34735 PF00501 AMP-binding enzyme AFR_34740 PF00356 Bacterial regulatory proteins, lacI family AFR_34755 PF00107 Zinc-binding dehydrogenase AFR_34755 PF08240 Alcohol dehydrogenase GroES-like domain AFR_34765 PF05199 GMC oxidoreductase AFR_34770 PF00331 Glycosyl hydrolase family 10 AFR_34770 PF00553 Cellulose binding domain AFR_34775 PF11774 Lsr2 AFR_34780 PF00106 short chain dehydrogenase AFR_34790 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFR_34790 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_34795 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFR_34795 PF00941 FAD binding domain in molybdopterin dehydrogenase AFR_34800 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFR_34800 PF01799 [2Fe-2S] binding domain AFR_34800 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_34815 PF03707 Bacterial signalling protein N terminal repeat AFR_34815 PF00990 Diguanylate cyclase, GGDEF domain AFR_34815 PF00563 EAL domain AFR_34825 PF01566 Natural resistance-associated macrophage protein AFR_34830 PF03746 LamB/YcsF family AFR_34835 PF07286 Protein of unknown function (DUF1445) AFR_34840 PF02682 Carboxyltransferase domain, subdomain C and D AFR_34845 PF02626 Carboxyltransferase domain, subdomain A and B AFR_34890 PF04545 Sigma-70, region 4 AFR_34890 PF04542 Sigma-70 region 2 AFR_34915 PF13476 AAA domain AFR_34920 PF12320 Type 5 capsule protein repressor C-terminal domain AFR_34920 PF00149 Calcineurin-like phosphoesterase AFR_34935 PF00356 Bacterial regulatory proteins, lacI family AFR_34955 PF06968 Biotin and Thiamin Synthesis associated domain AFR_34955 PF04055 Radical SAM superfamily AFR_34960 PF00155 Aminotransferase class I and II AFR_34970 PF00583 Acetyltransferase (GNAT) family AFR_34975 PF03471 Transporter associated domain AFR_34975 PF01595 Cyclin M transmembrane N-terminal domain AFR_34975 PF00571 CBS domain AFR_34980 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFR_34980 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFR_34980 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFR_34985 PF00294 pfkB family carbohydrate kinase AFR_35015 PF12706 Beta-lactamase superfamily domain AFR_35025 PF01966 HD domain AFR_35025 PF13286 Phosphohydrolase-associated domain AFR_35050 PF00106 short chain dehydrogenase AFR_35055 PF04679 ATP dependent DNA ligase C terminal region AFR_35055 PF01068 ATP dependent DNA ligase domain AFR_35060 PF00561 alpha/beta hydrolase fold AFR_35065 PF00027 Cyclic nucleotide-binding domain AFR_35065 PF00520 Ion transport protein AFR_35080 PF12704 MacB-like periplasmic core domain AFR_35080 PF02687 FtsX-like permease family AFR_35080 PF00005 ABC transporter AFR_35085 PF07730 Histidine kinase AFR_35090 PF00196 Bacterial regulatory proteins, luxR family AFR_35090 PF00072 Response regulator receiver domain AFR_35095 PF03466 LysR substrate binding domain AFR_35095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_35100 PF08240 Alcohol dehydrogenase GroES-like domain AFR_35100 PF00107 Zinc-binding dehydrogenase AFR_35110 PF13298 DNA polymerase Ligase (LigD) AFR_35110 PF01068 ATP dependent DNA ligase domain AFR_35110 PF04679 ATP dependent DNA ligase C terminal region AFR_35125 PF01641 SelR domain AFR_35130 PF00186 Dihydrofolate reductase AFR_35135 PF00303 Thymidylate synthase AFR_35150 PF03358 NADPH-dependent FMN reductase AFR_35160 PF13673 Acetyltransferase (GNAT) domain AFR_35175 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFR_35185 PF13180 PDZ domain AFR_35190 PF01612 3'-5' exonuclease AFR_35190 PF00570 HRDC domain AFR_35200 PF00108 Thiolase, N-terminal domain AFR_35200 PF02803 Thiolase, C-terminal domain AFR_35205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFR_35205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFR_35205 PF00378 Enoyl-CoA hydratase/isomerase AFR_35225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_35225 PF00672 HAMP domain AFR_35225 PF00512 His Kinase A (phospho-acceptor) domain AFR_35230 PF00486 Transcriptional regulatory protein, C terminal AFR_35230 PF00072 Response regulator receiver domain AFR_35250 PF02780 Transketolase, C-terminal domain AFR_35250 PF02779 Transketolase, pyrimidine binding domain AFR_35250 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFR_35255 PF00375 Sodium:dicarboxylate symporter family AFR_35260 PF01938 TRAM domain AFR_35260 PF05958 tRNA (Uracil-5-)-methyltransferase AFR_35265 PF13520 Amino acid permease AFR_35270 PF02080 TrkA-C domain AFR_35270 PF02254 TrkA-N domain AFR_35275 PF02080 TrkA-C domain AFR_35275 PF02254 TrkA-N domain AFR_35295 PF00692 dUTPase AFR_35320 PF00459 Inositol monophosphatase family AFR_35325 PF00140 Sigma-70 factor, region 1.2 AFR_35325 PF04542 Sigma-70 region 2 AFR_35325 PF04545 Sigma-70, region 4 AFR_35325 PF04539 Sigma-70 region 3 AFR_35335 PF04851 Type III restriction enzyme, res subunit AFR_35340 PF03458 UPF0126 domain AFR_35350 PF04227 Indigoidine synthase A like protein AFR_35365 PF00563 EAL domain AFR_35365 PF00990 Diguanylate cyclase, GGDEF domain AFR_35365 PF03707 Bacterial signalling protein N terminal repeat AFR_35380 PF01791 DeoC/LacD family aldolase AFR_35390 PF00563 EAL domain AFR_35390 PF03707 Bacterial signalling protein N terminal repeat AFR_35390 PF00990 Diguanylate cyclase, GGDEF domain AFR_35405 PF02580 D-Tyr-tRNA(Tyr) deacylase AFR_35415 PF04539 Sigma-70 region 3 AFR_35415 PF04545 Sigma-70, region 4 AFR_35415 PF04542 Sigma-70 region 2 AFR_35415 PF00140 Sigma-70 factor, region 1.2 AFR_35425 PF02629 CoA binding domain AFR_35425 PF00549 CoA-ligase AFR_35430 PF00850 Histone deacetylase domain AFR_35435 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFR_35435 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFR_35435 PF18357 Diphteria toxin repressor SH3 domain AFR_35460 PF07690 Major Facilitator Superfamily AFR_35480 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_35495 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_35510 PF03477 ATP cone domain AFR_35520 PF01726 LexA DNA binding domain AFR_35520 PF00717 Peptidase S24-like AFR_35535 PF16360 GTP-binding GTPase Middle Region AFR_35535 PF13167 GTP-binding GTPase N-terminal AFR_35535 PF01926 50S ribosome-binding GTPase AFR_35540 PF03949 Malic enzyme, NAD binding domain AFR_35540 PF00390 Malic enzyme, N-terminal domain AFR_35550 PF01678 Diaminopimelate epimerase AFR_35560 PF03993 Domain of Unknown Function (DUF349) AFR_35565 PF00291 Pyridoxal-phosphate dependent enzyme AFR_35575 PF01638 HxlR-like helix-turn-helix AFR_35580 PF03466 LysR substrate binding domain AFR_35580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_35590 PF03707 Bacterial signalling protein N terminal repeat AFR_35590 PF00990 Diguanylate cyclase, GGDEF domain AFR_35590 PF00563 EAL domain AFR_35595 PF00919 Uncharacterized protein family UPF0004 AFR_35595 PF04055 Radical SAM superfamily AFR_35605 PF00005 ABC transporter AFR_35610 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_35615 PF00528 Binding-protein-dependent transport system inner membrane component AFR_35620 PF00528 Binding-protein-dependent transport system inner membrane component AFR_35635 PF12072 Domain of unknown function (DUF3552) AFR_35635 PF01966 HD domain AFR_35635 PF00013 KH domain AFR_35650 PF02631 RecX family AFR_35655 PF00154 recA bacterial DNA recombination protein AFR_35670 PF03167 Uracil DNA glycosylase superfamily AFR_35675 PF02867 Ribonucleotide reductase, barrel domain AFR_35675 PF00317 Ribonucleotide reductase, all-alpha domain AFR_35675 PF03477 ATP cone domain AFR_35685 PF00392 Bacterial regulatory proteins, gntR family AFR_35685 PF00155 Aminotransferase class I and II AFR_35700 PF01810 LysE type translocator AFR_35705 PF07070 SpoOM protein AFR_35710 PF01595 Cyclin M transmembrane N-terminal domain AFR_35710 PF03471 Transporter associated domain AFR_35710 PF00571 CBS domain AFR_35715 PF01595 Cyclin M transmembrane N-terminal domain AFR_35715 PF03471 Transporter associated domain AFR_35715 PF00571 CBS domain AFR_35720 PF04389 Peptidase family M28 AFR_35720 PF01483 Proprotein convertase P-domain AFR_35725 PF03793 PASTA domain AFR_35725 PF00069 Protein kinase domain AFR_35740 PF00270 DEAD/DEAH box helicase AFR_35740 PF08494 DEAD/H associated AFR_35740 PF00271 Helicase conserved C-terminal domain AFR_35755 PF00296 Luciferase-like monooxygenase AFR_35780 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_35780 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_35800 PF00994 Probable molybdopterin binding domain AFR_35800 PF18146 Damage-inducible protein CinA KH domain AFR_35800 PF02464 Competence-damaged protein AFR_35810 PF00919 Uncharacterized protein family UPF0004 AFR_35810 PF04055 Radical SAM superfamily AFR_35810 PF18693 TRAM domain AFR_35820 PF17854 FtsK alpha domain AFR_35820 PF01580 FtsK/SpoIIIE family AFR_35820 PF09397 Ftsk gamma domain AFR_35835 PF02983 Alpha-lytic protease prodomain AFR_35840 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AFR_35840 PF12706 Beta-lactamase superfamily domain AFR_35840 PF17770 Ribonuclease J C-terminal domain AFR_35845 PF00701 Dihydrodipicolinate synthetase family AFR_35855 PF06224 Winged helix DNA-binding domain AFR_35870 PF00528 Binding-protein-dependent transport system inner membrane component AFR_35875 PF00528 Binding-protein-dependent transport system inner membrane component AFR_35885 PF00356 Bacterial regulatory proteins, lacI family AFR_35895 PF05173 Dihydrodipicolinate reductase, C-terminus AFR_35895 PF01113 Dihydrodipicolinate reductase, N-terminus AFR_35905 PF00675 Insulinase (Peptidase family M16) AFR_35905 PF05193 Peptidase M16 inactive domain AFR_35910 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFR_35910 PF00013 KH domain AFR_35910 PF01138 3' exoribonuclease family, domain 1 AFR_35910 PF00575 S1 RNA binding domain AFR_35915 PF00312 Ribosomal protein S15 AFR_35920 PF01687 Riboflavin kinase AFR_35920 PF06574 FAD synthetase AFR_35925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_35925 PF00512 His Kinase A (phospho-acceptor) domain AFR_35925 PF00072 Response regulator receiver domain AFR_35925 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_35925 PF01627 Hpt domain AFR_35925 PF00989 PAS fold AFR_35935 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFR_35935 PF09142 tRNA Pseudouridine synthase II, C terminal AFR_35935 PF16198 tRNA pseudouridylate synthase B C-terminal domain AFR_35955 PF02272 DHHA1 domain AFR_35955 PF01368 DHH family AFR_35960 PF02033 Ribosome-binding factor A AFR_35970 PF08241 Methyltransferase domain AFR_35975 PF04760 Translation initiation factor IF-2, N-terminal region AFR_35975 PF11987 Translation-initiation factor 2 AFR_35975 PF00009 Elongation factor Tu GTP binding domain AFR_35985 PF08529 NusA N-terminal domain AFR_35985 PF13184 NusA-like KH domain AFR_35990 PF02576 RimP N-terminal domain AFR_35990 PF17384 RimP C-terminal SH3 domain AFR_36015 PF00557 Metallopeptidase family M24 AFR_36025 PF08448 PAS fold AFR_36025 PF13426 PAS domain AFR_36025 PF00072 Response regulator receiver domain AFR_36025 PF00512 His Kinase A (phospho-acceptor) domain AFR_36025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_36035 PF07722 Peptidase C26 AFR_36040 PF07722 Peptidase C26 AFR_36050 PF00171 Aldehyde dehydrogenase family AFR_36055 PF00120 Glutamine synthetase, catalytic domain AFR_36070 PF00106 short chain dehydrogenase AFR_36090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_36090 PF07730 Histidine kinase AFR_36095 PF00196 Bacterial regulatory proteins, luxR family AFR_36095 PF00072 Response regulator receiver domain AFR_36100 PF00005 ABC transporter AFR_36100 PF13732 Domain of unknown function (DUF4162) AFR_36110 PF08359 YsiA-like protein, C-terminal region AFR_36110 PF00440 Bacterial regulatory proteins, tetR family AFR_36120 PF00005 ABC transporter AFR_36130 PF00583 Acetyltransferase (GNAT) family AFR_36140 PF04551 GcpE protein AFR_36145 PF17820 PDZ domain AFR_36145 PF02163 Peptidase family M50 AFR_36150 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFR_36150 PF13288 DXP reductoisomerase C-terminal domain AFR_36150 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AFR_36165 PF03176 MMPL family AFR_36170 PF00440 Bacterial regulatory proteins, tetR family AFR_36170 PF13305 Tetracyclin repressor-like, C-terminal domain AFR_36180 PF00355 Rieske [2Fe-2S] domain AFR_36195 PF04055 Radical SAM superfamily AFR_36205 PF01765 Ribosome recycling factor AFR_36210 PF00696 Amino acid kinase family AFR_36215 PF00889 Elongation factor TS AFR_36220 PF00318 Ribosomal protein S2 AFR_36230 PF02021 Uncharacterised protein family UPF0102 AFR_36235 PF01078 Magnesium chelatase, subunit ChlI AFR_36235 PF13335 Magnesium chelatase, subunit ChlI C-terminal AFR_36240 PF02481 DNA recombination-mediator protein A AFR_36240 PF17782 DprA winged helix domain AFR_36270 PF00589 Phage integrase family AFR_36270 PF02899 Phage integrase, N-terminal SAM-like domain AFR_36280 PF01551 Peptidase family M23 AFR_36285 PF10611 Protein of unknown function (DUF2469) AFR_36290 PF01351 Ribonuclease HII AFR_36295 PF00293 NUDIX domain AFR_36295 PF03099 Biotin/lipoate A/B protein ligase family AFR_36300 PF10502 Signal peptidase, peptidase S26 AFR_36305 PF10502 Signal peptidase, peptidase S26 AFR_36310 PF01245 Ribosomal protein L19 AFR_36315 PF01746 tRNA (Guanine-1)-methyltransferase AFR_36320 PF01782 RimM N-terminal domain AFR_36320 PF05239 PRC-barrel domain AFR_36330 PF00886 Ribosomal protein S16 AFR_36345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_36345 PF03129 Anticodon binding domain AFR_36360 PF01979 Amidohydrolase family AFR_36370 PF00448 SRP54-type protein, GTPase domain AFR_36370 PF02881 SRP54-type protein, helical bundle domain AFR_36370 PF02978 Signal peptide binding domain AFR_36380 PF17103 Stealth protein CR4, conserved region 4 AFR_36380 PF17102 Stealth protein CR3, conserved region 3 AFR_36380 PF11380 Stealth protein CR2, conserved region 2 AFR_36380 PF17101 Stealth protein CR1, conserved region 1 AFR_36385 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_36385 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_36385 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_36390 PF01757 Acyltransferase family AFR_36405 PF00535 Glycosyl transferase family 2 AFR_36410 PF05675 Protein of unknown function (DUF817) AFR_36415 PF01966 HD domain AFR_36415 PF08335 GlnD PII-uridylyltransferase AFR_36415 PF01909 Nucleotidyltransferase domain AFR_36420 PF00543 Nitrogen regulatory protein P-II AFR_36425 PF00909 Ammonium Transporter Family AFR_36435 PF00448 SRP54-type protein, GTPase domain AFR_36435 PF02881 SRP54-type protein, helical bundle domain AFR_36445 PF04978 Protein of unknown function (DUF664) AFR_36485 PF02463 RecF/RecN/SMC N terminal domain AFR_36485 PF06470 SMC proteins Flexible Hinge Domain AFR_36495 PF00188 Cysteine-rich secretory protein family AFR_36515 PF06827 Zinc finger found in FPG and IleRS AFR_36515 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_36515 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_36525 PF00035 Double-stranded RNA binding motif AFR_36525 PF14622 Ribonuclease-III-like AFR_36530 PF02504 Fatty acid synthesis protein AFR_36535 PF01783 Ribosomal L32p protein family AFR_36540 PF02620 Large ribosomal RNA subunit accumulation protein YceD AFR_36550 PF01467 Cytidylyltransferase-like AFR_36580 PF17191 RecG wedge domain AFR_36580 PF00271 Helicase conserved C-terminal domain AFR_36580 PF00270 DEAD/DEAH box helicase AFR_36585 PF13684 Dihydroxyacetone kinase family AFR_36585 PF02734 DAK2 domain AFR_36590 PF00830 Ribosomal L28 family AFR_36595 PF00583 Acetyltransferase (GNAT) family AFR_36600 PF00586 AIR synthase related protein, N-terminal domain AFR_36600 PF02769 AIR synthase related protein, C-terminal domain AFR_36615 PF01820 D-ala D-ala ligase N-terminus AFR_36615 PF07478 D-ala D-ala ligase C-terminus AFR_36630 PF00005 ABC transporter AFR_36645 PF01053 Cys/Met metabolism PLP-dependent enzyme AFR_36650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFR_36650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFR_36670 PF13089 Polyphosphate kinase N-terminal domain AFR_36670 PF13090 Polyphosphate kinase C-terminal domain 2 AFR_36670 PF02503 Polyphosphate kinase middle domain AFR_36670 PF17941 Polyphosphate kinase C-terminal domain 1 AFR_36675 PF00293 NUDIX domain AFR_36675 PF00300 Histidine phosphatase superfamily (branch 1) AFR_36685 PF00216 Bacterial DNA-binding protein AFR_36690 PF00694 Aconitase C-terminal domain AFR_36695 PF00330 Aconitase family (aconitate hydratase) AFR_36705 PF00753 Metallo-beta-lactamase superfamily AFR_36710 PF05368 NmrA-like family AFR_36720 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_36725 PF01381 Helix-turn-helix AFR_36735 PF00005 ABC transporter AFR_36755 PF00472 RF-1 domain AFR_36755 PF03462 PCRF domain AFR_36760 PF00892 EamA-like transporter family AFR_36770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_36770 PF00512 His Kinase A (phospho-acceptor) domain AFR_36770 PF00672 HAMP domain AFR_36775 PF00072 Response regulator receiver domain AFR_36775 PF00486 Transcriptional regulatory protein, C terminal AFR_36780 PF13180 PDZ domain AFR_36780 PF00595 PDZ domain AFR_36785 PF13519 von Willebrand factor type A domain AFR_36790 PF01882 Protein of unknown function DUF58 AFR_36795 PF07726 ATPase family associated with various cellular activities (AAA) AFR_36795 PF17863 AAA lid domain AFR_36800 PF05193 Peptidase M16 inactive domain AFR_36800 PF00675 Insulinase (Peptidase family M16) AFR_36820 PF00440 Bacterial regulatory proteins, tetR family AFR_36820 PF08361 MAATS-type transcriptional repressor, C-terminal region AFR_36825 PF00005 ABC transporter AFR_36835 PF08502 LeuA allosteric (dimerisation) domain AFR_36835 PF00682 HMGL-like AFR_36855 PF01063 Amino-transferase class IV AFR_36860 PF00180 Isocitrate/isopropylmalate dehydrogenase AFR_36870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_36870 PF01842 ACT domain AFR_36870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_36885 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AFR_36885 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFR_36890 PF10369 Small subunit of acetolactate synthase AFR_36895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_36895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_36895 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_36900 PF00563 EAL domain AFR_36900 PF00990 Diguanylate cyclase, GGDEF domain AFR_36900 PF03707 Bacterial signalling protein N terminal repeat AFR_36905 PF00920 Dehydratase family AFR_36915 PF00528 Binding-protein-dependent transport system inner membrane component AFR_36920 PF00528 Binding-protein-dependent transport system inner membrane component AFR_36930 PF00356 Bacterial regulatory proteins, lacI family AFR_36935 PF00563 EAL domain AFR_36935 PF01590 GAF domain AFR_36935 PF00990 Diguanylate cyclase, GGDEF domain AFR_36935 PF00360 Phytochrome region AFR_36940 PF02597 ThiS family AFR_36955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_36960 PF07995 Glucose / Sorbosone dehydrogenase AFR_36970 PF02934 GatB/GatE catalytic domain AFR_36970 PF02637 GatB domain AFR_36975 PF01425 Amidase AFR_36980 PF02686 Glu-tRNAGln amidotransferase C subunit AFR_36985 PF03707 Bacterial signalling protein N terminal repeat AFR_36985 PF00563 EAL domain AFR_36985 PF00990 Diguanylate cyclase, GGDEF domain AFR_36995 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AFR_36995 PF12826 Helix-hairpin-helix motif AFR_36995 PF03120 NAD-dependent DNA ligase OB-fold domain AFR_36995 PF00533 BRCA1 C Terminus (BRCT) domain AFR_36995 PF01653 NAD-dependent DNA ligase adenylation domain AFR_37020 PF00266 Aminotransferase class-V AFR_37025 PF00766 Electron transfer flavoprotein FAD-binding domain AFR_37025 PF01012 Electron transfer flavoprotein domain AFR_37030 PF01012 Electron transfer flavoprotein domain AFR_37035 PF02656 Domain of unknown function (DUF202) AFR_37050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_37050 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_37050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_37055 PF00012 Hsp70 protein AFR_37065 PF00378 Enoyl-CoA hydratase/isomerase AFR_37085 PF00294 pfkB family carbohydrate kinase AFR_37090 PF00005 ABC transporter AFR_37100 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_37115 PF00440 Bacterial regulatory proteins, tetR family AFR_37120 PF00403 Heavy-metal-associated domain AFR_37125 PF02909 Tetracyclin repressor-like, C-terminal domain AFR_37125 PF00440 Bacterial regulatory proteins, tetR family AFR_37135 PF05088 Bacterial NAD-glutamate dehydrogenase AFR_37140 PF00905 Penicillin binding protein transpeptidase domain AFR_37145 PF00491 Arginase family AFR_37150 PF00085 Thioredoxin AFR_37155 PF00106 short chain dehydrogenase AFR_37175 PF07504 Fungalysin/Thermolysin Propeptide Motif AFR_37175 PF01483 Proprotein convertase P-domain AFR_37175 PF02868 Thermolysin metallopeptidase, alpha-helical domain AFR_37175 PF01447 Thermolysin metallopeptidase, catalytic domain AFR_37190 PF03707 Bacterial signalling protein N terminal repeat AFR_37190 PF00563 EAL domain AFR_37190 PF00990 Diguanylate cyclase, GGDEF domain AFR_37195 PF01494 FAD binding domain AFR_37210 PF00108 Thiolase, N-terminal domain AFR_37210 PF02803 Thiolase, C-terminal domain AFR_37245 PF00171 Aldehyde dehydrogenase family AFR_37250 PF00005 ABC transporter AFR_37250 PF09383 NIL domain AFR_37260 PF01939 Endonuclease NucS AFR_37275 PF01580 FtsK/SpoIIIE family AFR_37285 PF00005 ABC transporter AFR_37295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFR_37295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFR_37310 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFR_37315 PF01923 Cobalamin adenosyltransferase AFR_37325 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFR_37330 PF03816 Cell envelope-related transcriptional attenuator domain AFR_37335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_37335 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFR_37340 PF00231 ATP synthase AFR_37345 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFR_37345 PF00306 ATP synthase alpha/beta chain, C terminal domain AFR_37345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_37350 PF00213 ATP synthase delta (OSCP) subunit AFR_37355 PF00430 ATP synthase B/B' CF(0) AFR_37360 PF00137 ATP synthase subunit C AFR_37365 PF00119 ATP synthase A chain AFR_37380 PF00464 Serine hydroxymethyltransferase AFR_37385 PF13460 NAD(P)H-binding AFR_37385 PF11066 Protein of unknown function (DUF2867) AFR_37390 PF03481 Putative GTP-binding controlling metal-binding AFR_37390 PF01300 Telomere recombination AFR_37395 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFR_37400 PF01300 Telomere recombination AFR_37405 PF17827 PrmC N-terminal domain AFR_37405 PF05175 Methyltransferase small domain AFR_37410 PF00990 Diguanylate cyclase, GGDEF domain AFR_37420 PF00472 RF-1 domain AFR_37420 PF03462 PCRF domain AFR_37425 PF01197 Ribosomal protein L31 AFR_37445 PF02898 Nitric oxide synthase, oxygenase domain AFR_37450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_37450 PF07498 Rho termination factor, N-terminal domain AFR_37450 PF07497 Rho termination factor, RNA-binding domain AFR_37455 PF00288 GHMP kinases N terminal domain AFR_37470 PF00873 AcrB/AcrD/AcrF family AFR_37475 PF01047 MarR family AFR_37480 PF00291 Pyridoxal-phosphate dependent enzyme AFR_37485 PF03447 Homoserine dehydrogenase, NAD binding domain AFR_37485 PF00742 Homoserine dehydrogenase AFR_37485 PF01842 ACT domain AFR_37490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_37490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_37495 PF00750 tRNA synthetases class I (R) AFR_37495 PF03485 Arginyl tRNA synthetase N terminal domain AFR_37495 PF05746 DALR anticodon binding domain AFR_37515 PF08240 Alcohol dehydrogenase GroES-like domain AFR_37515 PF00107 Zinc-binding dehydrogenase AFR_37545 PF00106 short chain dehydrogenase AFR_37555 PF13193 AMP-binding enzyme C-terminal domain AFR_37555 PF00501 AMP-binding enzyme AFR_37560 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_37565 PF00221 Aromatic amino acid lyase AFR_37575 PF01070 FMN-dependent dehydrogenase AFR_37585 PF00999 Sodium/hydrogen exchanger family AFR_37590 PF00072 Response regulator receiver domain AFR_37590 PF00486 Transcriptional regulatory protein, C terminal AFR_37595 PF00512 His Kinase A (phospho-acceptor) domain AFR_37595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_37605 PF00069 Protein kinase domain AFR_37605 PF03793 PASTA domain AFR_37615 PF00144 Beta-lactamase AFR_37640 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_37640 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFR_37645 PF01638 HxlR-like helix-turn-helix AFR_37650 PF01738 Dienelactone hydrolase family AFR_37660 PF00106 short chain dehydrogenase AFR_37665 PF03466 LysR substrate binding domain AFR_37665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_37675 PF07690 Major Facilitator Superfamily AFR_37680 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AFR_37690 PF14525 AraC-binding-like domain AFR_37690 PF12833 Helix-turn-helix domain AFR_37705 PF00583 Acetyltransferase (GNAT) family AFR_37720 PF02469 Fasciclin domain AFR_37735 PF04542 Sigma-70 region 2 AFR_37735 PF04545 Sigma-70, region 4 AFR_37740 PF04542 Sigma-70 region 2 AFR_37740 PF08281 Sigma-70, region 4 AFR_37750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_37750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_37770 PF04542 Sigma-70 region 2 AFR_37770 PF08281 Sigma-70, region 4 AFR_37775 PF03738 Glutathionylspermidine synthase preATP-grasp AFR_37790 PF16657 Maltogenic Amylase, C-terminal domain AFR_37790 PF00128 Alpha amylase, catalytic domain AFR_37815 PF09335 SNARE associated Golgi protein AFR_37825 PF00041 Fibronectin type III domain AFR_37825 PF00704 Glycosyl hydrolases family 18 AFR_37830 PF02096 60Kd inner membrane protein AFR_37830 PF14849 YidC periplasmic domain AFR_37840 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_37845 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_37845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_37850 PF01522 Polysaccharide deacetylase AFR_37855 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_37855 PF06827 Zinc finger found in FPG and IleRS AFR_37855 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_37860 PF00574 Clp protease AFR_37875 PF00202 Aminotransferase class-III AFR_37885 PF01329 Pterin 4 alpha carbinolamine dehydratase AFR_37910 PF00041 Fibronectin type III domain AFR_37910 PF00704 Glycosyl hydrolases family 18 AFR_37910 PF02018 Carbohydrate binding domain AFR_37915 PF17912 MalK OB fold domain AFR_37915 PF00005 ABC transporter AFR_37935 PF00595 PDZ domain AFR_37940 PF00512 His Kinase A (phospho-acceptor) domain AFR_37940 PF00672 HAMP domain AFR_37940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_37945 PF00072 Response regulator receiver domain AFR_37945 PF00486 Transcriptional regulatory protein, C terminal AFR_37950 PF01553 Acyltransferase AFR_37960 PF00005 ABC transporter AFR_37970 PF02779 Transketolase, pyrimidine binding domain AFR_37970 PF16870 2-oxoglutarate dehydrogenase C-terminal AFR_37970 PF16078 2-oxoglutarate dehydrogenase N-terminus AFR_37970 PF00676 Dehydrogenase E1 component AFR_37970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFR_37985 PF00664 ABC transporter transmembrane region AFR_37985 PF00005 ABC transporter AFR_37990 PF00005 ABC transporter AFR_37990 PF00664 ABC transporter transmembrane region AFR_37995 PF01515 Phosphate acetyl/butaryl transferase AFR_37995 PF07085 DRTGG domain AFR_38000 PF00871 Acetokinase family AFR_38015 PF08240 Alcohol dehydrogenase GroES-like domain AFR_38015 PF00107 Zinc-binding dehydrogenase AFR_38020 PF00390 Malic enzyme, N-terminal domain AFR_38020 PF03949 Malic enzyme, NAD binding domain AFR_38030 PF09055 Nickel-containing superoxide dismutase AFR_38040 PF13581 Histidine kinase-like ATPase domain AFR_38045 PF00392 Bacterial regulatory proteins, gntR family AFR_38045 PF07702 UTRA domain AFR_38055 PF00781 Diacylglycerol kinase catalytic domain AFR_38060 PF02467 Transcription factor WhiB AFR_38070 PF01507 Phosphoadenosine phosphosulfate reductase family AFR_38080 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFR_38080 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFR_38095 PF07568 Histidine kinase AFR_38095 PF12282 Signal transduction histidine kinase AFR_38095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_38100 PF01380 SIS domain AFR_38110 PF00364 Biotin-requiring enzyme AFR_38115 PF13490 Putative zinc-finger AFR_38120 PF04542 Sigma-70 region 2 AFR_38120 PF08281 Sigma-70, region 4 AFR_38135 PF02586 SOS response associated peptidase (SRAP) AFR_38140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFR_38145 PF03193 RsgA GTPase AFR_38150 PF00459 Inositol monophosphatase family AFR_38170 PF00196 Bacterial regulatory proteins, luxR family AFR_38170 PF00072 Response regulator receiver domain AFR_38190 PF00722 Glycosyl hydrolases family 16 AFR_38195 PF00912 Transglycosylase AFR_38195 PF00905 Penicillin binding protein transpeptidase domain AFR_38200 PF01374 Glycosyl hydrolase family 46 AFR_38210 PF02446 4-alpha-glucanotransferase AFR_38260 PF03176 MMPL family AFR_38265 PF03741 Integral membrane protein TerC family AFR_38275 PF00805 Pentapeptide repeats (8 copies) AFR_38290 PF00106 short chain dehydrogenase AFR_38305 PF03699 Uncharacterised protein family (UPF0182) AFR_38310 PF05362 Lon protease (S16) C-terminal proteolytic domain AFR_38310 PF13180 PDZ domain AFR_38340 PF03109 ABC1 family AFR_38345 PF02467 Transcription factor WhiB AFR_38355 PF00580 UvrD/REP helicase N-terminal domain AFR_38355 PF00570 HRDC domain AFR_38355 PF13361 UvrD-like helicase C-terminal domain AFR_38360 PF00462 Glutaredoxin AFR_38370 PF00072 Response regulator receiver domain AFR_38370 PF00196 Bacterial regulatory proteins, luxR family AFR_38375 PF07730 Histidine kinase AFR_38385 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AFR_38390 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AFR_38390 PF00293 NUDIX domain AFR_38390 PF09297 NADH pyrophosphatase zinc ribbon domain AFR_38410 PF02622 Uncharacterized ACR, COG1678 AFR_38425 PF01522 Polysaccharide deacetylase AFR_38435 PF02082 Transcriptional regulator AFR_38445 PF00005 ABC transporter AFR_38450 PF00528 Binding-protein-dependent transport system inner membrane component AFR_38465 PF00313 'Cold-shock' DNA-binding domain AFR_38475 PF00580 UvrD/REP helicase N-terminal domain AFR_38475 PF13361 UvrD-like helicase C-terminal domain AFR_38480 PF13361 UvrD-like helicase C-terminal domain AFR_38480 PF00580 UvrD/REP helicase N-terminal domain AFR_38485 PF00356 Bacterial regulatory proteins, lacI family AFR_38495 PF03641 Possible lysine decarboxylase AFR_38500 PF03641 Possible lysine decarboxylase AFR_38505 PF07687 Peptidase dimerisation domain AFR_38505 PF01546 Peptidase family M20/M25/M40 AFR_38530 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AFR_38530 PF14602 Hexapeptide repeat of succinyl-transferase AFR_38565 PF09278 MerR, DNA binding AFR_38565 PF00376 MerR family regulatory protein AFR_38570 PF01212 Beta-eliminating lyase AFR_38575 PF00248 Aldo/keto reductase family AFR_38580 PF04542 Sigma-70 region 2 AFR_38580 PF08281 Sigma-70, region 4 AFR_38580 PF12680 SnoaL-like domain AFR_38585 PF00106 short chain dehydrogenase AFR_38590 PF01022 Bacterial regulatory protein, arsR family AFR_38610 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_38615 PF12867 DinB superfamily AFR_38615 PF03781 Sulfatase-modifying factor enzyme 1 AFR_38625 PF10017 Histidine-specific methyltransferase, SAM-dependent AFR_38630 PF00596 Class II Aldolase and Adducin N-terminal domain AFR_38635 PF12680 SnoaL-like domain AFR_38635 PF04542 Sigma-70 region 2 AFR_38635 PF08281 Sigma-70, region 4 AFR_38655 PF13439 Glycosyltransferase Family 4 AFR_38675 PF00534 Glycosyl transferases group 1 AFR_38715 PF00248 Aldo/keto reductase family AFR_38725 PF05922 Peptidase inhibitor I9 AFR_38725 PF00082 Subtilase family AFR_38740 PF00155 Aminotransferase class I and II AFR_38745 PF00037 4Fe-4S binding domain AFR_38760 PF03466 LysR substrate binding domain AFR_38760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_38780 PF02585 GlcNAc-PI de-N-acetylase AFR_38785 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AFR_38785 PF00326 Prolyl oligopeptidase family AFR_38795 PF00990 Diguanylate cyclase, GGDEF domain AFR_38820 PF02910 Fumarate reductase flavoprotein C-term AFR_38820 PF00890 FAD binding domain AFR_38825 PF13085 2Fe-2S iron-sulfur cluster binding domain AFR_38825 PF13183 4Fe-4S dicluster domain AFR_38860 PF00005 ABC transporter AFR_38860 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFR_38865 PF00005 ABC transporter AFR_38875 PF11862 Domain of unknown function (DUF3382) AFR_38875 PF02653 Branched-chain amino acid transport system / permease component AFR_38895 PF01636 Phosphotransferase enzyme family AFR_38900 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_38900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_38900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_38920 PF00196 Bacterial regulatory proteins, luxR family AFR_38930 PF07730 Histidine kinase AFR_38930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_38930 PF00672 HAMP domain AFR_38935 PF01370 NAD dependent epimerase/dehydratase family AFR_38960 PF00535 Glycosyl transferase family 2 AFR_38965 PF03301 Tryptophan 2,3-dioxygenase AFR_38970 PF00107 Zinc-binding dehydrogenase AFR_38970 PF08240 Alcohol dehydrogenase GroES-like domain AFR_38975 PF00171 Aldehyde dehydrogenase family AFR_38980 PF02909 Tetracyclin repressor-like, C-terminal domain AFR_38980 PF00440 Bacterial regulatory proteins, tetR family AFR_38985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_38985 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_38985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_38990 PF00501 AMP-binding enzyme AFR_38990 PF13193 AMP-binding enzyme C-terminal domain AFR_38995 PF00293 NUDIX domain AFR_39020 PF00652 Ricin-type beta-trefoil lectin domain AFR_39020 PF02983 Alpha-lytic protease prodomain AFR_39050 PF03358 NADPH-dependent FMN reductase AFR_39080 PF07690 Major Facilitator Superfamily AFR_39115 PF06071 Protein of unknown function (DUF933) AFR_39115 PF01926 50S ribosome-binding GTPase AFR_39145 PF08241 Methyltransferase domain AFR_39150 PF06029 AlkA N-terminal domain AFR_39150 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_39150 PF12833 Helix-turn-helix domain AFR_39150 PF02805 Metal binding domain of Ada AFR_39155 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFR_39155 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFR_39175 PF08264 Anticodon-binding domain of tRNA AFR_39175 PF00133 tRNA synthetases class I (I, L, M and V) AFR_39190 PF02646 RmuC family AFR_39195 PF02401 LytB protein AFR_39210 PF13742 OB-fold nucleic acid binding domain AFR_39210 PF02601 Exonuclease VII, large subunit AFR_39215 PF02609 Exonuclease VII small subunit AFR_39225 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFR_39235 PF01694 Rhomboid family AFR_39240 PF00089 Trypsin AFR_39250 PF13638 PIN domain AFR_39250 PF02562 PhoH-like protein AFR_39255 PF02358 Trehalose-phosphatase AFR_39260 PF03466 LysR substrate binding domain AFR_39260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_39265 PF00892 EamA-like transporter family AFR_39270 PF01255 Putative undecaprenyl diphosphate synthase AFR_39290 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AFR_39290 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AFR_39295 PF08281 Sigma-70, region 4 AFR_39295 PF04542 Sigma-70 region 2 AFR_39325 PF01039 Carboxyl transferase domain AFR_39345 PF00069 Protein kinase domain AFR_39365 PF02545 Maf-like protein AFR_39375 PF00005 ABC transporter AFR_39375 PF13732 Domain of unknown function (DUF4162) AFR_39385 PF02785 Biotin carboxylase C-terminal domain AFR_39385 PF00289 Biotin carboxylase, N-terminal domain AFR_39385 PF00364 Biotin-requiring enzyme AFR_39385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_39400 PF08379 Bacterial transglutaminase-like N-terminal region AFR_39400 PF01841 Transglutaminase-like superfamily AFR_39410 PF04174 A circularly permuted ATPgrasp AFR_39420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_39420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_39445 PF12706 Beta-lactamase superfamily domain AFR_39455 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_39455 PF01546 Peptidase family M20/M25/M40 AFR_39460 PF02310 B12 binding domain AFR_39460 PF01642 Methylmalonyl-CoA mutase AFR_39465 PF03793 PASTA domain AFR_39465 PF00069 Protein kinase domain AFR_39470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFR_39470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFR_39470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFR_39470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFR_39485 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AFR_39500 PF01791 DeoC/LacD family aldolase AFR_39505 PF00171 Aldehyde dehydrogenase family AFR_39510 PF00171 Aldehyde dehydrogenase family AFR_39540 PF03259 Roadblock/LC7 domain AFR_39545 PF08521 Two-component sensor kinase N-terminal AFR_39545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_39545 PF00512 His Kinase A (phospho-acceptor) domain AFR_39550 PF00962 Adenosine/AMP deaminase AFR_39565 PF02885 Glycosyl transferase family, helical bundle domain AFR_39565 PF00591 Glycosyl transferase family, a/b domain AFR_39565 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AFR_39570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFR_39590 PF02608 ABC transporter substrate-binding protein PnrA-like AFR_39605 PF00440 Bacterial regulatory proteins, tetR family AFR_39625 PF00579 tRNA synthetases class I (W and Y) AFR_39630 PF01370 NAD dependent epimerase/dehydratase family AFR_39635 PF08544 GHMP kinases C terminal AFR_39635 PF00288 GHMP kinases N terminal domain AFR_39635 PF10509 Galactokinase galactose-binding signature AFR_39645 PF01022 Bacterial regulatory protein, arsR family AFR_39660 PF04616 Glycosyl hydrolases family 43 AFR_39660 PF16369 C-terminal lipocalin-like domain AFR_39665 PF00528 Binding-protein-dependent transport system inner membrane component AFR_39670 PF00528 Binding-protein-dependent transport system inner membrane component AFR_39675 PF13416 Bacterial extracellular solute-binding protein AFR_39680 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AFR_39685 PF00356 Bacterial regulatory proteins, lacI family AFR_39690 PF00009 Elongation factor Tu GTP binding domain AFR_39695 PF01507 Phosphoadenosine phosphosulfate reductase family AFR_39700 PF00459 Inositol monophosphatase family AFR_39705 PF02397 Bacterial sugar transferase AFR_39710 PF01195 Peptidyl-tRNA hydrolase AFR_39715 PF14693 Ribosomal protein TL5, C-terminal domain AFR_39715 PF01386 Ribosomal L25p family AFR_39720 PF14572 Phosphoribosyl synthetase-associated domain AFR_39720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFR_39725 PF12804 MobA-like NTP transferase domain AFR_39725 PF00132 Bacterial transferase hexapeptide (six repeats) AFR_39730 PF10503 Esterase PHB depolymerase AFR_39750 PF00561 alpha/beta hydrolase fold AFR_39755 PF00550 Phosphopantetheine attachment site AFR_39760 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_39760 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_39760 PF00698 Acyl transferase domain AFR_39760 PF16197 Ketoacyl-synthetase C-terminal extension AFR_39760 PF00550 Phosphopantetheine attachment site AFR_39760 PF14765 Polyketide synthase dehydratase AFR_39760 PF08659 KR domain AFR_39765 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_39765 PF00698 Acyl transferase domain AFR_39765 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_39765 PF14765 Polyketide synthase dehydratase AFR_39765 PF16197 Ketoacyl-synthetase C-terminal extension AFR_39765 PF00550 Phosphopantetheine attachment site AFR_39765 PF08659 KR domain AFR_39770 PF00440 Bacterial regulatory proteins, tetR family AFR_39785 PF00005 ABC transporter AFR_39785 PF16326 ABC transporter C-terminal domain AFR_39785 PF12848 ABC transporter AFR_39790 PF08544 GHMP kinases C terminal AFR_39790 PF00288 GHMP kinases N terminal domain AFR_39800 PF00398 Ribosomal RNA adenine dimethylase AFR_39810 PF01026 TatD related DNase AFR_39825 PF09334 tRNA synthetases class I (M) AFR_39835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_39840 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase AFR_39840 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AFR_39850 PF01522 Polysaccharide deacetylase AFR_39865 PF00149 Calcineurin-like phosphoesterase AFR_39895 PF00994 Probable molybdopterin binding domain AFR_39895 PF03454 MoeA C-terminal region (domain IV) AFR_39895 PF03453 MoeA N-terminal region (domain I and II) AFR_39900 PF00483 Nucleotidyl transferase AFR_39905 PF00072 Response regulator receiver domain AFR_39905 PF00990 Diguanylate cyclase, GGDEF domain AFR_39910 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFR_39940 PF01475 Ferric uptake regulator family AFR_39960 PF01914 MarC family integral membrane protein AFR_39965 PF02811 PHP domain AFR_39990 PF00085 Thioredoxin AFR_39995 PF04055 Radical SAM superfamily AFR_39995 PF04055 Radical SAM superfamily AFR_40040 PF02567 Phenazine biosynthesis-like protein AFR_40045 PF03448 MgtE intracellular N domain AFR_40045 PF00571 CBS domain AFR_40045 PF01769 Divalent cation transporter AFR_40055 PF10609 NUBPL iron-transfer P-loop NTPase AFR_40055 PF01883 Iron-sulfur cluster assembly protein AFR_40060 PF02416 mttA/Hcf106 family AFR_40065 PF00595 PDZ domain AFR_40070 PF01596 O-methyltransferase AFR_40075 PF02789 Cytosol aminopeptidase family, N-terminal domain AFR_40075 PF00883 Cytosol aminopeptidase family, catalytic domain AFR_40090 PF00378 Enoyl-CoA hydratase/isomerase AFR_40095 PF00089 Trypsin AFR_40105 PF03352 Methyladenine glycosylase AFR_40105 PF13673 Acetyltransferase (GNAT) domain AFR_40105 PF00117 Glutamine amidotransferase class-I AFR_40105 PF00958 GMP synthase C terminal domain AFR_40105 PF13302 Acetyltransferase (GNAT) domain AFR_40120 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFR_40125 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFR_40125 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AFR_40125 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AFR_40130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_40135 PF07885 Ion channel AFR_40135 PF02254 TrkA-N domain AFR_40145 PF00196 Bacterial regulatory proteins, luxR family AFR_40165 PF00490 Delta-aminolevulinic acid dehydratase AFR_40170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_40170 PF14824 Sirohaem biosynthesis protein central AFR_40170 PF10414 Sirohaem synthase dimerisation region AFR_40175 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFR_40175 PF03900 Porphobilinogen deaminase, C-terminal domain AFR_40180 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFR_40180 PF01488 Shikimate / quinate 5-dehydrogenase AFR_40180 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFR_40185 PF02629 CoA binding domain AFR_40185 PF06971 Putative DNA-binding protein N-terminus AFR_40195 PF05768 Glutaredoxin-like domain (DUF836) AFR_40200 PF13193 AMP-binding enzyme C-terminal domain AFR_40200 PF00501 AMP-binding enzyme AFR_40205 PF04542 Sigma-70 region 2 AFR_40205 PF08281 Sigma-70, region 4 AFR_40215 PF01553 Acyltransferase AFR_40220 PF01370 NAD dependent epimerase/dehydratase family AFR_40225 PF12728 Helix-turn-helix domain AFR_40230 PF01619 Proline dehydrogenase AFR_40240 PF01261 Xylose isomerase-like TIM barrel AFR_40250 PF00704 Glycosyl hydrolases family 18 AFR_40250 PF00041 Fibronectin type III domain AFR_40250 PF00553 Cellulose binding domain AFR_40265 PF00106 short chain dehydrogenase AFR_40270 PF00072 Response regulator receiver domain AFR_40270 PF00486 Transcriptional regulatory protein, C terminal AFR_40275 PF00512 His Kinase A (phospho-acceptor) domain AFR_40275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40280 PF01895 PhoU domain AFR_40285 PF00300 Histidine phosphatase superfamily (branch 1) AFR_40295 PF01584 CheW-like domain AFR_40300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_40300 PF13426 PAS domain AFR_40300 PF08447 PAS fold AFR_40305 PF00083 Sugar (and other) transporter AFR_40310 PF10722 Putative bacterial sensory transduction regulator AFR_40315 PF13439 Glycosyltransferase Family 4 AFR_40315 PF00534 Glycosyl transferases group 1 AFR_40320 PF00106 short chain dehydrogenase AFR_40335 PF00072 Response regulator receiver domain AFR_40335 PF00486 Transcriptional regulatory protein, C terminal AFR_40340 PF00082 Subtilase family AFR_40340 PF05922 Peptidase inhibitor I9 AFR_40350 PF00512 His Kinase A (phospho-acceptor) domain AFR_40350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40350 PF00672 HAMP domain AFR_40370 PF01464 Transglycosylase SLT domain AFR_40370 PF10145 Phage-related minor tail protein AFR_40370 PF01551 Peptidase family M23 AFR_40375 PF02599 Global regulator protein family AFR_40380 PF02623 FliW protein AFR_40385 PF00700 Bacterial flagellin C-terminal helical region AFR_40385 PF00669 Bacterial flagellin N-terminal helical region AFR_40390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFR_40390 PF00460 Flagella basal body rod protein AFR_40400 PF00669 Bacterial flagellin N-terminal helical region AFR_40400 PF00700 Bacterial flagellin C-terminal helical region AFR_40410 PF02561 Flagellar protein FliS AFR_40420 PF00460 Flagella basal body rod protein AFR_40425 PF00460 Flagella basal body rod protein AFR_40425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFR_40430 PF02049 Flagellar hook-basal body complex protein FliE AFR_40435 PF08345 Flagellar M-ring protein C-terminal AFR_40435 PF01514 Secretory protein of YscJ/FliF family AFR_40440 PF14842 FliG N-terminal domain AFR_40440 PF14841 FliG middle domain AFR_40440 PF01706 FliG C-terminal domain AFR_40450 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFR_40450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_40450 PF18269 T3SS EscN ATPase C-terminal domain AFR_40460 PF01464 Transglycosylase SLT domain AFR_40460 PF10145 Phage-related minor tail protein AFR_40460 PF01551 Peptidase family M23 AFR_40470 PF13861 FlgD Tudor-like domain AFR_40470 PF13860 FlgD Ig-like domain AFR_40470 PF03963 Flagellar hook capping protein - N-terminal region AFR_40475 PF07559 Flagellar basal body protein FlaE AFR_40475 PF00460 Flagella basal body rod protein AFR_40475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFR_40485 PF01618 MotA/TolQ/ExbB proton channel family AFR_40490 PF13677 Membrane MotB of proton-channel complex MotA/MotB AFR_40490 PF00691 OmpA family AFR_40500 PF02154 Flagellar motor switch protein FliM AFR_40500 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFR_40505 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AFR_40505 PF04509 CheC-like family AFR_40515 PF00813 FliP family AFR_40520 PF01311 Bacterial export proteins, family 1 AFR_40525 PF01312 FlhB HrpN YscU SpaS Family AFR_40530 PF00771 FHIPEP family AFR_40545 PF01594 AI-2E family transporter AFR_40560 PF00072 Response regulator receiver domain AFR_40570 PF00072 Response regulator receiver domain AFR_40575 PF01739 CheR methyltransferase, SAM binding domain AFR_40575 PF03705 CheR methyltransferase, all-alpha domain AFR_40580 PF00072 Response regulator receiver domain AFR_40580 PF01339 CheB methylesterase AFR_40590 PF01584 CheW-like domain AFR_40595 PF01627 Hpt domain AFR_40595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40595 PF01584 CheW-like domain AFR_40595 PF02895 Signal transducing histidine kinase, homodimeric domain AFR_40595 PF09078 CheY binding AFR_40600 PF00486 Transcriptional regulatory protein, C terminal AFR_40600 PF00072 Response regulator receiver domain AFR_40605 PF00989 PAS fold AFR_40605 PF13188 PAS domain AFR_40605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40605 PF00512 His Kinase A (phospho-acceptor) domain AFR_40615 PF01565 FAD binding domain AFR_40615 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFR_40625 PF00232 Glycosyl hydrolase family 1 AFR_40630 PF00356 Bacterial regulatory proteins, lacI family AFR_40635 PF01661 Macro domain AFR_40670 PF01381 Helix-turn-helix AFR_40680 PF05853 beta-keto acid cleavage enzyme AFR_40685 PF01571 Aminomethyltransferase folate-binding domain AFR_40690 PF01475 Ferric uptake regulator family AFR_40695 PF01063 Amino-transferase class IV AFR_40700 PF08768 Domain of unknown function (DUF1794) AFR_40725 PF07210 Protein of unknown function (DUF1416) AFR_40730 PF00581 Rhodanese-like domain AFR_40745 PF00486 Transcriptional regulatory protein, C terminal AFR_40750 PF13508 Acetyltransferase (GNAT) domain AFR_40750 PF00583 Acetyltransferase (GNAT) family AFR_40760 PF07690 Major Facilitator Superfamily AFR_40765 PF12849 PBP superfamily domain AFR_40770 PF00528 Binding-protein-dependent transport system inner membrane component AFR_40775 PF00528 Binding-protein-dependent transport system inner membrane component AFR_40780 PF00005 ABC transporter AFR_40790 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_40790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_40795 PF01384 Phosphate transporter family AFR_40810 PF04542 Sigma-70 region 2 AFR_40810 PF08281 Sigma-70, region 4 AFR_40810 PF12680 SnoaL-like domain AFR_40820 PF13307 Helicase C-terminal domain AFR_40825 PF01594 AI-2E family transporter AFR_40835 PF13847 Methyltransferase domain AFR_40840 PF13367 PrsW family intramembrane metalloprotease AFR_40860 PF01266 FAD dependent oxidoreductase AFR_40860 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AFR_40865 PF00578 AhpC/TSA family AFR_40885 PF00118 TCP-1/cpn60 chaperonin family AFR_40900 PF00583 Acetyltransferase (GNAT) family AFR_40905 PF00291 Pyridoxal-phosphate dependent enzyme AFR_40910 PF00005 ABC transporter AFR_40925 PF01434 Peptidase family M41 AFR_40925 PF17862 AAA+ lid domain AFR_40925 PF00004 ATPase family associated with various cellular activities (AAA) AFR_40935 PF00005 ABC transporter AFR_40975 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AFR_40980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40980 PF00512 His Kinase A (phospho-acceptor) domain AFR_40980 PF00672 HAMP domain AFR_40985 PF00072 Response regulator receiver domain AFR_40985 PF00486 Transcriptional regulatory protein, C terminal AFR_40995 PF00535 Glycosyl transferase family 2 AFR_41000 PF00534 Glycosyl transferases group 1 AFR_41000 PF13439 Glycosyltransferase Family 4 AFR_41015 PF08220 DeoR-like helix-turn-helix domain AFR_41015 PF00455 DeoR C terminal sensor domain AFR_41025 PF00480 ROK family AFR_41030 PF01979 Amidohydrolase family AFR_41065 PF00082 Subtilase family AFR_41085 PF17912 MalK OB fold domain AFR_41085 PF00005 ABC transporter AFR_41090 PF00012 Hsp70 protein AFR_41095 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFR_41095 PF00588 SpoU rRNA Methylase family AFR_41100 PF01406 tRNA synthetases class I (C) catalytic domain AFR_41100 PF09190 DALR domain AFR_41110 PF00082 Subtilase family AFR_41115 PF10415 Fumarase C C-terminus AFR_41115 PF00206 Lyase AFR_41135 PF05681 Fumarate hydratase (Fumerase) AFR_41135 PF05683 Fumarase C-terminus AFR_41150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_41155 PF06271 RDD family AFR_41165 PF00155 Aminotransferase class I and II AFR_41170 PF02687 FtsX-like permease family AFR_41170 PF12704 MacB-like periplasmic core domain AFR_41175 PF00005 ABC transporter AFR_41180 PF07730 Histidine kinase AFR_41180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_41185 PF00072 Response regulator receiver domain AFR_41185 PF00196 Bacterial regulatory proteins, luxR family AFR_41200 PF13360 PQQ-like domain AFR_41200 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFR_41225 PF01374 Glycosyl hydrolase family 46 AFR_41230 PF00480 ROK family AFR_41235 PF01547 Bacterial extracellular solute-binding protein AFR_41240 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41245 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41250 PF11975 Family 4 glycosyl hydrolase C-terminal domain AFR_41250 PF02056 Family 4 glycosyl hydrolase AFR_41270 PF02542 YgbB family AFR_41275 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFR_41280 PF02559 CarD-like/TRCF domain AFR_41295 PF00195 Chalcone and stilbene synthases, N-terminal domain AFR_41295 PF02797 Chalcone and stilbene synthases, C-terminal domain AFR_41300 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_41300 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_41300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_41305 PF08241 Methyltransferase domain AFR_41320 PF06745 KaiC AFR_41320 PF18073 Rubredoxin metal binding domain AFR_41325 PF02457 DisA bacterial checkpoint controller nucleotide-binding AFR_41325 PF10635 DisA bacterial checkpoint controller linker region AFR_41325 PF12826 Helix-hairpin-helix motif AFR_41335 PF01327 Polypeptide deformylase AFR_41345 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_41345 PF00633 Helix-hairpin-helix motif AFR_41345 PF10576 Iron-sulfur binding domain of endonuclease III AFR_41355 PF00004 ATPase family associated with various cellular activities (AAA) AFR_41355 PF07724 AAA domain (Cdc48 subfamily) AFR_41355 PF17871 AAA lid domain AFR_41355 PF02861 Clp amino terminal domain, pathogenicity island component AFR_41355 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_41360 PF11774 Lsr2 AFR_41365 PF01336 OB-fold nucleic acid binding domain AFR_41365 PF00152 tRNA synthetases class II (D, K and N) AFR_41370 PF03309 Type III pantothenate kinase AFR_41375 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFR_41375 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFR_41380 PF00890 FAD binding domain AFR_41380 PF02910 Fumarate reductase flavoprotein C-term AFR_41390 PF02569 Pantoate-beta-alanine ligase AFR_41405 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFR_41425 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41430 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41435 PF00005 ABC transporter AFR_41435 PF00571 CBS domain AFR_41460 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFR_41465 PF02152 Dihydroneopterin aldolase AFR_41470 PF00809 Pterin binding enzyme AFR_41500 PF01551 Peptidase family M23 AFR_41500 PF10145 Phage-related minor tail protein AFR_41500 PF01464 Transglycosylase SLT domain AFR_41515 PF01580 FtsK/SpoIIIE family AFR_41535 PF01227 GTP cyclohydrolase I AFR_41540 PF00004 ATPase family associated with various cellular activities (AAA) AFR_41540 PF17862 AAA+ lid domain AFR_41540 PF01434 Peptidase family M41 AFR_41550 PF01171 PP-loop family AFR_41550 PF09179 TilS substrate binding domain AFR_41560 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AFR_41565 PF00719 Inorganic pyrophosphatase AFR_41575 PF01580 FtsK/SpoIIIE family AFR_41580 PF00082 Subtilase family AFR_41585 PF02674 Colicin V production protein AFR_41590 PF00293 NUDIX domain AFR_41595 PF08534 Redoxin AFR_41600 PF10576 Iron-sulfur binding domain of endonuclease III AFR_41600 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_41605 PF09587 Bacterial capsule synthesis protein PGA_cap AFR_41610 PF13545 Crp-like helix-turn-helix domain AFR_41610 PF00027 Cyclic nucleotide-binding domain AFR_41615 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AFR_41620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_41620 PF02785 Biotin carboxylase C-terminal domain AFR_41620 PF00289 Biotin carboxylase, N-terminal domain AFR_41620 PF00364 Biotin-requiring enzyme AFR_41625 PF13191 AAA ATPase domain AFR_41625 PF00069 Protein kinase domain AFR_41630 PF00072 Response regulator receiver domain AFR_41630 PF00211 Adenylate and Guanylate cyclase catalytic domain AFR_41635 PF16123 Hydroxyacylglutathione hydrolase C-terminus AFR_41635 PF00753 Metallo-beta-lactamase superfamily AFR_41655 PF02374 Anion-transporting ATPase AFR_41660 PF17886 HSP20-like domain found in ArsA AFR_41660 PF02374 Anion-transporting ATPase AFR_41665 PF02467 Transcription factor WhiB AFR_41670 PF00905 Penicillin binding protein transpeptidase domain AFR_41670 PF17092 Penicillin-binding protein OB-like domain AFR_41670 PF00912 Transglycosylase AFR_41675 PF09424 Yqey-like protein AFR_41695 PF07690 Major Facilitator Superfamily AFR_41705 PF00156 Phosphoribosyl transferase domain AFR_41715 PF03707 Bacterial signalling protein N terminal repeat AFR_41715 PF00563 EAL domain AFR_41715 PF00990 Diguanylate cyclase, GGDEF domain AFR_41730 PF01590 GAF domain AFR_41730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_41740 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFR_41740 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFR_41745 PF00696 Amino acid kinase family AFR_41745 PF13840 ACT domain AFR_41745 PF01842 ACT domain AFR_41755 PF00682 HMGL-like AFR_41755 PF08502 LeuA allosteric (dimerisation) domain AFR_41770 PF00728 Glycosyl hydrolase family 20, catalytic domain AFR_41770 PF02838 Glycosyl hydrolase family 20, domain 2 AFR_41775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_41775 PF00005 ABC transporter AFR_41780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_41780 PF00005 ABC transporter AFR_41785 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_41800 PF00633 Helix-hairpin-helix motif AFR_41800 PF13662 Toprim domain AFR_41800 PF02132 RecR protein AFR_41805 PF02575 YbaB/EbfC DNA-binding family AFR_41810 PF12169 DNA polymerase III subunits gamma and tau domain III AFR_41860 PF02040 Arsenical pump membrane protein AFR_41880 PF01048 Phosphorylase superfamily AFR_41885 PF14437 MafB19-like deaminase AFR_41915 PF02153 Prephenate dehydrogenase AFR_41920 PF04978 Protein of unknown function (DUF664) AFR_41925 PF01008 Initiation factor 2 subunit family AFR_41925 PF00596 Class II Aldolase and Adducin N-terminal domain AFR_41930 PF14716 Helix-hairpin-helix domain AFR_41930 PF14791 DNA polymerase beta thumb AFR_41930 PF02811 PHP domain AFR_41945 PF00512 His Kinase A (phospho-acceptor) domain AFR_41945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_41945 PF08521 Two-component sensor kinase N-terminal AFR_41970 PF05496 Holliday junction DNA helicase RuvB P-loop domain AFR_41970 PF05491 RuvB C-terminal winged helix domain AFR_41970 PF17864 RuvB AAA lid domain AFR_41990 PF02350 UDP-N-acetylglucosamine 2-epimerase AFR_42015 PF00553 Cellulose binding domain AFR_42015 PF00041 Fibronectin type III domain AFR_42015 PF00704 Glycosyl hydrolases family 18 AFR_42030 PF07690 Major Facilitator Superfamily AFR_42035 PF01202 Shikimate kinase AFR_42040 PF07690 Major Facilitator Superfamily AFR_42050 PF17158 Membrane-associated sensor, integral membrane domain AFR_42050 PF00990 Diguanylate cyclase, GGDEF domain AFR_42095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_42095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_42110 PF01259 SAICAR synthetase AFR_42125 PF00149 Calcineurin-like phosphoesterase AFR_42125 PF02872 5'-nucleotidase, C-terminal domain AFR_42150 PF00005 ABC transporter AFR_42155 PF00392 Bacterial regulatory proteins, gntR family AFR_42185 PF00175 Oxidoreductase NAD-binding domain AFR_42185 PF00970 Oxidoreductase FAD-binding domain AFR_42185 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_42190 PF01327 Polypeptide deformylase AFR_42210 PF01161 Phosphatidylethanolamine-binding protein AFR_42215 PF00512 His Kinase A (phospho-acceptor) domain AFR_42215 PF00989 PAS fold AFR_42215 PF16736 Single Cache-like AFR_42215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_42225 PF13302 Acetyltransferase (GNAT) domain AFR_42230 PF00877 NlpC/P60 family AFR_42230 PF01476 LysM domain AFR_42230 PF08239 Bacterial SH3 domain AFR_42240 PF08281 Sigma-70, region 4 AFR_42240 PF04542 Sigma-70 region 2 AFR_42250 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_42255 PF03992 Antibiotic biosynthesis monooxygenase AFR_42265 PF09278 MerR, DNA binding AFR_42265 PF00376 MerR family regulatory protein AFR_42310 PF08240 Alcohol dehydrogenase GroES-like domain AFR_42310 PF00107 Zinc-binding dehydrogenase AFR_42310 PF16197 Ketoacyl-synthetase C-terminal extension AFR_42310 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_42310 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_42310 PF00698 Acyl transferase domain AFR_42310 PF00550 Phosphopantetheine attachment site AFR_42310 PF14765 Polyketide synthase dehydratase AFR_42310 PF08659 KR domain AFR_42330 PF00376 MerR family regulatory protein AFR_42330 PF09278 MerR, DNA binding AFR_42335 PF00456 Transketolase, thiamine diphosphate binding domain AFR_42340 PF02779 Transketolase, pyrimidine binding domain AFR_42345 PF00665 Integrase core domain AFR_42355 PF02803 Thiolase, C-terminal domain AFR_42355 PF00108 Thiolase, N-terminal domain AFR_42370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFR_42385 PF01544 CorA-like Mg2+ transporter protein AFR_42390 PF00155 Aminotransferase class I and II AFR_42390 PF00392 Bacterial regulatory proteins, gntR family AFR_42395 PF00483 Nucleotidyl transferase AFR_42400 PF13685 Iron-containing alcohol dehydrogenase AFR_42415 PF13439 Glycosyltransferase Family 4 AFR_42420 PF06827 Zinc finger found in FPG and IleRS AFR_42420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_42425 PF02397 Bacterial sugar transferase AFR_42430 PF06580 Histidine kinase AFR_42430 PF07694 5TMR of 5TMR-LYT AFR_42435 PF00072 Response regulator receiver domain AFR_42435 PF04397 LytTr DNA-binding domain AFR_42440 PF00072 Response regulator receiver domain AFR_42440 PF00486 Transcriptional regulatory protein, C terminal AFR_42445 PF00672 HAMP domain AFR_42445 PF00512 His Kinase A (phospho-acceptor) domain AFR_42445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_42460 PF00474 Sodium:solute symporter family AFR_42470 PF13732 Domain of unknown function (DUF4162) AFR_42470 PF00005 ABC transporter AFR_42480 PF00579 tRNA synthetases class I (W and Y) AFR_42495 PF00474 Sodium:solute symporter family AFR_42500 PF01370 NAD dependent epimerase/dehydratase family AFR_42505 PF03816 Cell envelope-related transcriptional attenuator domain AFR_42510 PF03816 Cell envelope-related transcriptional attenuator domain AFR_42515 PF00581 Rhodanese-like domain AFR_42520 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_42525 PF00512 His Kinase A (phospho-acceptor) domain AFR_42525 PF00989 PAS fold AFR_42525 PF16736 Single Cache-like AFR_42525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_42565 PF01842 ACT domain AFR_42565 PF00800 Prephenate dehydratase AFR_42580 PF02566 OsmC-like protein AFR_42590 PF02403 Seryl-tRNA synthetase N-terminal domain AFR_42590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_42605 PF10759 Protein of unknown function (DUF2587) AFR_42640 PF02634 FdhD/NarQ family AFR_42645 PF09423 PhoD-like phosphatase AFR_42645 PF16655 PhoD-like phosphatase, N-terminal domain AFR_42665 PF06463 Molybdenum Cofactor Synthesis C AFR_42665 PF04055 Radical SAM superfamily AFR_42675 PF00149 Calcineurin-like phosphoesterase AFR_42680 PF00580 UvrD/REP helicase N-terminal domain AFR_42680 PF13361 UvrD-like helicase C-terminal domain AFR_42720 PF02391 MoaE protein AFR_42730 PF00994 Probable molybdopterin binding domain AFR_42730 PF01967 MoaC family AFR_42735 PF01967 MoaC family AFR_42740 PF00360 Phytochrome region AFR_42740 PF00990 Diguanylate cyclase, GGDEF domain AFR_42740 PF00563 EAL domain AFR_42740 PF01590 GAF domain AFR_42805 PF00772 DnaB-like helicase N terminal domain AFR_42805 PF03796 DnaB-like helicase C terminal domain AFR_42815 PF03948 Ribosomal protein L9, C-terminal domain AFR_42815 PF01281 Ribosomal protein L9, N-terminal domain AFR_42820 PF01084 Ribosomal protein S18 AFR_42825 PF00436 Single-strand binding protein family AFR_42830 PF01250 Ribosomal protein S6 AFR_42840 PF01261 Xylose isomerase-like TIM barrel AFR_42860 PF00912 Transglycosylase AFR_42860 PF00905 Penicillin binding protein transpeptidase domain AFR_42865 PF17249 Family of unknown function (DUF5318) AFR_42870 PF03551 Transcriptional regulator PadR-like family AFR_42875 PF01658 Myo-inositol-1-phosphate synthase AFR_42885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFR_42885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AFR_42900 PF13735 tRNA nucleotidyltransferase domain 2 putative AFR_42900 PF12627 Probable RNA and SrmB- binding site of polymerase A AFR_42900 PF01743 Poly A polymerase head domain AFR_42910 PF03023 Lipid II flippase MurJ AFR_42915 PF03793 PASTA domain AFR_42915 PF00069 Protein kinase domain AFR_42920 PF08281 Sigma-70, region 4 AFR_42920 PF04542 Sigma-70 region 2 AFR_42930 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_42935 PF00085 Thioredoxin AFR_42940 PF01520 N-acetylmuramoyl-L-alanine amidase AFR_42940 PF01471 Putative peptidoglycan binding domain AFR_42950 PF00155 Aminotransferase class I and II AFR_42955 PF07478 D-ala D-ala ligase C-terminus AFR_42955 PF01820 D-ala D-ala ligase N-terminus AFR_42965 PF02195 ParB-like nuclease domain AFR_42965 PF17762 HTH domain found in ParB protein AFR_42970 PF13614 AAA domain AFR_42975 PF02527 rRNA small subunit methyltransferase G AFR_42985 PF02096 60Kd inner membrane protein AFR_42990 PF01809 Putative membrane protein insertion efficiency factor AFR_42995 PF00825 Ribonuclease P AFR_43000 PF00468 Ribosomal protein L34