AFR_00005 PF00308 Bacterial dnaA protein AFR_00005 PF08299 Bacterial dnaA protein helix-turn-helix AFR_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain AFR_00010 PF02767 DNA polymerase III beta subunit, central domain AFR_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain AFR_00015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFR_00015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_00020 PF02463 RecF/RecN/SMC N terminal domain AFR_00025 PF05258 AFR_00025 AFR_00040 PF00204 DNA gyrase B AFR_00040 PF00986 DNA gyrase B subunit, carboxyl terminus AFR_00040 PF01751 Toprim domain AFR_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_00045 PF00521 DNA gyrase/topoisomerase IV, subunit A AFR_00045 PF03989 DNA gyrase C-terminal domain, beta-propeller AFR_00050 PF12089 AFR_00050 AFR_00060 PF13302 Acetyltransferase (GNAT) domain AFR_00065 PF12728 Helix-turn-helix domain AFR_00070 PF02353 Mycolic acid cyclopropane synthetase AFR_00075 PF00293 NUDIX domain AFR_00085 PF04073 Aminoacyl-tRNA editing domain AFR_00090 PF00583 Acetyltransferase (GNAT) family AFR_00095 PF01323 DSBA-like thioredoxin domain AFR_00100 PF02657 Fe-S metabolism associated domain AFR_00105 PF00571 CBS domain AFR_00110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_00110 PF03129 Anticodon binding domain AFR_00110 PF04073 Aminoacyl-tRNA editing domain AFR_00115 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_00120 PF00581 Rhodanese-like domain AFR_00125 PF04542 Sigma-70 region 2 AFR_00125 PF08281 Sigma-70, region 4 AFR_00130 PF13490 Putative zinc-finger AFR_00135 PF00005 ABC transporter AFR_00150 PF04892 AFR_00150 AFR_00155 PF00183 Hsp90 protein AFR_00155 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_00165 PF00440 Bacterial regulatory proteins, tetR family AFR_00170 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFR_00170 PF02785 Biotin carboxylase C-terminal domain AFR_00170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_00175 PF00682 HMGL-like AFR_00185 PF03777 AFR_00185 AFR_00190 PF01039 Carboxyl transferase domain AFR_00195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_00195 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_00195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_00200 PF13560 Helix-turn-helix domain AFR_00205 PF12802 MarR family AFR_00210 PF04264 YceI-like domain AFR_00215 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_00225 PF03793 PASTA domain AFR_00235 PF13560 Helix-turn-helix domain AFR_00240 PF04149 AFR_00240 AFR_00255 PF03808 AFR_00255 AFR_00260 PF01370 NAD dependent epimerase/dehydratase family AFR_00265 PF12401 Protein of unknown function (DUF2662) AFR_00265 PF16697 AFR_00265 AFR_00270 PF16697 AFR_00270 AFR_00275 PF13672 Protein phosphatase 2C AFR_00280 PF01098 AFR_00280 AFR_00285 PF00905 Penicillin binding protein transpeptidase domain AFR_00290 PF00069 Protein kinase domain AFR_00295 PF00069 Protein kinase domain AFR_00295 PF03793 PASTA domain AFR_00300 PF00117 Glutamine amidotransferase class-I AFR_00310 PF04203 Sortase family AFR_00315 PF05949 Bacterial protein of unknown function (DUF881) AFR_00320 PF06781 AFR_00320 AFR_00325 PF02754 AFR_00325 AFR_00325 PF13183 4Fe-4S dicluster domain AFR_00330 PF05719 Golgi phosphoprotein 3 (GPP34) AFR_00335 PF00571 CBS domain AFR_00335 PF01595 AFR_00335 AFR_00335 PF03471 Transporter associated domain AFR_00340 PF00571 CBS domain AFR_00340 PF01595 AFR_00340 AFR_00345 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_00350 PF04542 Sigma-70 region 2 AFR_00350 PF08281 Sigma-70, region 4 AFR_00360 PF13560 Helix-turn-helix domain AFR_00365 PF00293 NUDIX domain AFR_00370 PF05973 AFR_00370 AFR_00375 PF13560 Helix-turn-helix domain AFR_00380 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_00385 PF00692 dUTPase AFR_00395 PF13620 Carboxypeptidase regulatory-like domain AFR_00400 PF03795 YCII-related domain AFR_00420 PF07228 Stage II sporulation protein E (SpoIIE) AFR_00430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_00430 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_00430 PF12418 AFR_00430 AFR_00430 PF12806 AFR_00430 AFR_00435 PF00300 Histidine phosphatase superfamily (branch 1) AFR_00445 PF13460 NADH(P)-binding AFR_00450 PF01638 HxlR-like helix-turn-helix AFR_00455 PF00561 alpha/beta hydrolase fold AFR_00460 PF03006 AFR_00460 AFR_00465 PF13905 Thioredoxin-like AFR_00480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFR_00480 PF00364 Biotin-requiring enzyme AFR_00480 PF02817 e3 binding domain AFR_00485 PF02779 Transketolase, pyrimidine binding domain AFR_00485 PF02780 Transketolase, C-terminal domain AFR_00490 PF00676 Dehydrogenase E1 component AFR_00500 PF05685 Putative restriction endonuclease AFR_00510 PF01926 50S ribosome-binding GTPase AFR_00515 PF00350 Dynamin family AFR_00520 PF00012 Hsp70 protein AFR_00525 PF01025 GrpE AFR_00530 PF00226 DnaJ domain AFR_00530 PF00684 DnaJ central domain AFR_00530 PF01556 DnaJ C terminal domain AFR_00535 PF13411 MerR HTH family regulatory protein AFR_00545 PF00999 Sodium/hydrogen exchanger family AFR_00550 PF02080 TrkA-C domain AFR_00555 PF07690 Major Facilitator Superfamily AFR_00565 PF00004 ATPase family associated with various cellular activities (AAA) AFR_00565 PF02861 Clp amino terminal domain AFR_00565 PF07724 AAA domain (Cdc48 subfamily) AFR_00565 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_00590 PF01022 Bacterial regulatory protein, arsR family AFR_00595 PF00596 Class II Aldolase and Adducin N-terminal domain AFR_00600 PF09335 AFR_00600 AFR_00605 PF00149 Calcineurin-like phosphoesterase AFR_00605 PF13671 AAA domain AFR_00605 PF16536 AFR_00605 AFR_00605 PF16542 AFR_00605 AFR_00610 PF12623 RNA repair, ligase-Pnkp-associating, region of Hen1 AFR_00610 PF13489 Methyltransferase domain AFR_00615 PF04542 Sigma-70 region 2 AFR_00615 PF08281 Sigma-70, region 4 AFR_00620 PF03816 Cell envelope-related transcriptional attenuator domain AFR_00630 PF01116 Fructose-bisphosphate aldolase class-II AFR_00645 PF09414 RNA ligase AFR_00655 PF03747 ADP-ribosylglycohydrolase AFR_00660 PF11349 AFR_00660 AFR_00680 PF00709 Adenylosuccinate synthetase AFR_00685 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AFR_00685 PF02843 Phosphoribosylglycinamide synthetase, C domain AFR_00685 PF02844 Phosphoribosylglycinamide synthetase, N domain AFR_00690 PF02036 SCP-2 sterol transfer family AFR_00695 PF12840 Helix-turn-helix domain AFR_00700 PF05977 Transmembrane secretion effector AFR_00705 PF00206 Lyase AFR_00705 PF10397 Adenylosuccinate lyase C-terminus AFR_00710 PF00089 Trypsin AFR_00715 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AFR_00720 PF13507 CobB/CobQ-like glutamine amidotransferase domain AFR_00725 PF00586 AIR synthase related protein, N-terminal domain AFR_00725 PF02769 AIR synthase related protein, C-terminal domain AFR_00730 PF13620 Carboxypeptidase regulatory-like domain AFR_00740 PF00156 Phosphoribosyl transferase domain AFR_00740 PF13522 Glutamine amidotransferase domain AFR_00745 PF00586 AIR synthase related protein, N-terminal domain AFR_00745 PF02769 AIR synthase related protein, C-terminal domain AFR_00750 PF04055 Radical SAM superfamily AFR_00760 PF11273 AFR_00760 AFR_00765 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFR_00765 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFR_00775 PF12728 Helix-turn-helix domain AFR_00780 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_00785 PF13649 Methyltransferase domain AFR_00790 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AFR_00800 PF13367 AFR_00800 AFR_00810 PF03061 Thioesterase superfamily AFR_00820 PF10979 AFR_00820 AFR_00835 PF13466 STAS domain AFR_00840 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_00850 PF04542 Sigma-70 region 2 AFR_00850 PF08281 Sigma-70, region 4 AFR_00855 PF03795 YCII-related domain AFR_00860 PF13474 SnoaL-like domain AFR_00875 PF02607 B12 binding domain AFR_00875 PF13411 MerR HTH family regulatory protein AFR_00880 PF00293 NUDIX domain AFR_00885 PF01593 Flavin containing amine oxidoreductase AFR_00890 PF00348 Polyprenyl synthetase AFR_00895 PF00494 Squalene/phytoene synthase AFR_00900 PF00875 DNA photolyase AFR_00900 PF03441 FAD binding domain of DNA photolyase AFR_00910 PF00144 Beta-lactamase AFR_00915 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_00915 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_00920 PF13581 Histidine kinase-like ATPase domain AFR_00925 PF13466 STAS domain AFR_00925 PF14417 AFR_00925 AFR_00930 PF00355 Rieske [2Fe-2S] domain AFR_00940 PF01565 FAD binding domain AFR_00940 PF02913 FAD linked oxidases, C-terminal domain AFR_00945 PF00561 alpha/beta hydrolase fold AFR_00950 PF00149 Calcineurin-like phosphoesterase AFR_00950 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_00955 PF00534 Glycosyl transferases group 1 AFR_00955 PF13439 Glycosyltransferase Family 4 AFR_00960 PF00534 Glycosyl transferases group 1 AFR_00960 PF13439 Glycosyltransferase Family 4 AFR_00965 PF05239 PRC-barrel domain AFR_00965 PF09557 AFR_00965 AFR_00970 PF00440 Bacterial regulatory proteins, tetR family AFR_00970 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_00975 PF03631 AFR_00975 AFR_00980 PF07332 AFR_00980 AFR_00985 PF12277 AFR_00985 AFR_00990 PF14019 AFR_00990 AFR_01010 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AFR_01020 PF01261 Xylose isomerase-like TIM barrel AFR_01025 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_01030 PF00440 Bacterial regulatory proteins, tetR family AFR_01030 PF13977 Bacterial transcriptional repressor AFR_01035 PF04542 Sigma-70 region 2 AFR_01035 PF08281 Sigma-70, region 4 AFR_01040 PF03795 YCII-related domain AFR_01045 PF13443 Cro/C1-type HTH DNA-binding domain AFR_01050 PF11188 AFR_01050 AFR_01055 PF12833 Helix-turn-helix domain AFR_01060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_01065 PF02810 SEC-C motif AFR_01070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_01070 PF03466 LysR substrate binding domain AFR_01075 PF13328 HD domain AFR_01080 PF00248 Aldo/keto reductase family AFR_01090 PF14106 AFR_01090 AFR_01095 PF01636 Phosphotransferase enzyme family AFR_01100 PF00512 His Kinase A (phospho-acceptor) domain AFR_01100 PF00672 HAMP domain AFR_01100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_01105 PF00072 Response regulator receiver domain AFR_01105 PF00486 Transcriptional regulatory protein, C terminal AFR_01115 PF01471 Putative peptidoglycan binding domain AFR_01120 PF00005 ABC transporter AFR_01125 PF02687 AFR_01125 AFR_01125 PF12704 MacB-like periplasmic core domain AFR_01135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_01140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_01140 PF07497 Rho termination factor, RNA-binding domain AFR_01145 PF02469 Fasciclin domain AFR_01150 PF12697 Alpha/beta hydrolase family AFR_01160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_01160 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_01165 PF01471 Putative peptidoglycan binding domain AFR_01165 PF03734 L,D-transpeptidase catalytic domain AFR_01170 PF00440 Bacterial regulatory proteins, tetR family AFR_01180 PF00652 Ricin-type beta-trefoil lectin domain AFR_01180 PF06283 Trehalose utilisation AFR_01185 PF07336 Protein of unknown function (DUF1470) AFR_01185 PF11706 CGNR zinc finger AFR_01190 PF13490 Putative zinc-finger AFR_01200 PF01741 Large-conductance mechanosensitive channel, MscL AFR_01205 PF01740 STAS domain AFR_01210 PF01740 STAS domain AFR_01210 PF14361 AFR_01210 AFR_01215 PF01740 STAS domain AFR_01220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_01225 PF07228 Stage II sporulation protein E (SpoIIE) AFR_01225 PF13581 Histidine kinase-like ATPase domain AFR_01230 PF00512 His Kinase A (phospho-acceptor) domain AFR_01230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_01235 PF00072 Response regulator receiver domain AFR_01235 PF07228 Stage II sporulation protein E (SpoIIE) AFR_01240 PF03551 Transcriptional regulator PadR-like family AFR_01245 PF00005 ABC transporter AFR_01255 PF00326 Prolyl oligopeptidase family AFR_01255 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AFR_01260 PF01565 FAD binding domain AFR_01265 PF01872 RibD C-terminal domain AFR_01270 PF01872 RibD C-terminal domain AFR_01275 PF00534 Glycosyl transferases group 1 AFR_01275 PF13439 Glycosyltransferase Family 4 AFR_01280 PF00534 Glycosyl transferases group 1 AFR_01280 PF02366 AFR_01280 AFR_01280 PF13439 Glycosyltransferase Family 4 AFR_01285 PF00535 Glycosyl transferase family 2 AFR_01290 PF07228 Stage II sporulation protein E (SpoIIE) AFR_01290 PF13581 Histidine kinase-like ATPase domain AFR_01295 PF00072 Response regulator receiver domain AFR_01295 PF00512 His Kinase A (phospho-acceptor) domain AFR_01295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_01295 PF13185 GAF domain AFR_01300 PF00072 Response regulator receiver domain AFR_01305 PF00296 Luciferase-like monooxygenase AFR_01315 PF13466 STAS domain AFR_01320 PF00202 Aminotransferase class-III AFR_01325 PF00300 Histidine phosphatase superfamily (branch 1) AFR_01330 PF00578 AhpC/TSA family AFR_01335 PF02683 AFR_01335 AFR_01340 PF05140 AFR_01340 AFR_01345 PF01578 AFR_01345 AFR_01350 PF00005 ABC transporter AFR_01355 PF00005 ABC transporter AFR_01360 PF13560 Helix-turn-helix domain AFR_01365 PF00356 Bacterial regulatory proteins, lacI family AFR_01365 PF13377 Periplasmic binding protein-like domain AFR_01370 PF01547 Bacterial extracellular solute-binding protein AFR_01375 PF16990 AFR_01375 AFR_01380 PF00128 Alpha amylase, catalytic domain AFR_01385 PF00356 Bacterial regulatory proteins, lacI family AFR_01385 PF13377 Periplasmic binding protein-like domain AFR_01390 PF04542 Sigma-70 region 2 AFR_01390 PF08281 Sigma-70, region 4 AFR_01400 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AFR_01405 PF01040 UbiA prenyltransferase family AFR_01410 PF04542 Sigma-70 region 2 AFR_01410 PF08281 Sigma-70, region 4 AFR_01420 PF02441 Flavoprotein AFR_01425 PF12728 Helix-turn-helix domain AFR_01430 PF01037 AsnC family AFR_01430 PF13404 AsnC-type helix-turn-helix domain AFR_01435 PF00291 Pyridoxal-phosphate dependent enzyme AFR_01445 PF06475 Putative glycolipid-binding AFR_01450 PF00270 DEAD/DEAH box helicase AFR_01450 PF00271 Helicase conserved C-terminal domain AFR_01465 PF00877 NlpC/P60 family AFR_01470 PF04055 Radical SAM superfamily AFR_01480 PF14012 AFR_01480 AFR_01485 PF00246 Zinc carboxypeptidase AFR_01500 PF00149 Calcineurin-like phosphoesterase AFR_01510 PF00440 Bacterial regulatory proteins, tetR family AFR_01510 PF13305 WHG domain AFR_01515 PF01497 Periplasmic binding protein AFR_01520 PF01032 FecCD transport family AFR_01525 PF00005 ABC transporter AFR_01540 PF00005 ABC transporter AFR_01545 PF13601 Winged helix DNA-binding domain AFR_01555 PF00583 Acetyltransferase (GNAT) family AFR_01560 PF13245 Part of AAA domain AFR_01565 PF12840 Helix-turn-helix domain AFR_01570 PF07690 Major Facilitator Superfamily AFR_01575 PF02621 Menaquinone biosynthesis AFR_01585 PF00535 Glycosyl transferase family 2 AFR_01595 PF01070 FMN-dependent dehydrogenase AFR_01600 PF00248 Aldo/keto reductase family AFR_01605 PF00652 Ricin-type beta-trefoil lectin domain AFR_01605 PF16483 AFR_01605 AFR_01610 PF04434 AFR_01610 AFR_01615 PF00176 SNF2 family N-terminal domain AFR_01615 PF00271 Helicase conserved C-terminal domain AFR_01615 PF12419 AFR_01615 AFR_01620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_01625 PF00440 Bacterial regulatory proteins, tetR family AFR_01625 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_01630 PF04055 Radical SAM superfamily AFR_01635 PF14062 AFR_01635 AFR_01640 PF01209 ubiE/COQ5 methyltransferase family AFR_01650 PF01494 FAD binding domain AFR_01655 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFR_01660 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFR_01665 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFR_01670 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFR_01675 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin AFR_01680 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFR_01680 PF10531 SLBB domain AFR_01680 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_01685 PF00384 Molybdopterin oxidoreductase AFR_01685 PF01568 Molydopterin dinucleotide binding domain AFR_01685 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFR_01685 PF13510 2Fe-2S iron-sulfur cluster binding domain AFR_01690 PF00146 NADH dehydrogenase AFR_01695 PF12838 4Fe-4S dicluster domain AFR_01700 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFR_01705 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFR_01710 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFR_01710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFR_01715 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFR_01720 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFR_01725 PF00348 Polyprenyl synthetase AFR_01730 PF07690 Major Facilitator Superfamily AFR_01735 PF01614 Bacterial transcriptional regulator AFR_01735 PF09339 IclR helix-turn-helix domain AFR_01740 PF04542 Sigma-70 region 2 AFR_01740 PF04545 Sigma-70, region 4 AFR_01745 PF13490 Putative zinc-finger AFR_01750 PF00892 EamA-like transporter family AFR_01755 PF00583 Acetyltransferase (GNAT) family AFR_01760 PF04020 AFR_01760 AFR_01770 PF06013 Proteins of 100 residues with WXG AFR_01775 PF06013 Proteins of 100 residues with WXG AFR_01780 PF07179 AFR_01780 AFR_01790 PF00561 alpha/beta hydrolase fold AFR_01800 PF05547 AFR_01800 AFR_01810 PF05547 AFR_01810 AFR_01815 PF00501 AMP-binding enzyme AFR_01815 PF13193 AMP-binding enzyme C-terminal domain AFR_01815 PF16177 AFR_01815 AFR_01825 PF10756 AFR_01825 AFR_01830 PF12710 haloacid dehalogenase-like hydrolase AFR_01835 PF13466 STAS domain AFR_01840 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFR_01845 PF00437 Type II/IV secretion system protein AFR_01855 PF00482 Type II secretion system (T2SS), protein F AFR_01860 PF14029 AFR_01860 AFR_01865 PF07811 AFR_01865 AFR_01870 PF13400 AFR_01870 AFR_01875 PF00270 DEAD/DEAH box helicase AFR_01875 PF00271 Helicase conserved C-terminal domain AFR_01875 PF09369 AFR_01875 AFR_01880 PF01740 STAS domain AFR_01885 PF13581 Histidine kinase-like ATPase domain AFR_01890 PF03030 Inorganic H+ pyrophosphatase AFR_01905 PF01131 DNA topoisomerase AFR_01905 PF01751 Toprim domain AFR_01905 PF13368 AFR_01905 AFR_01910 PF01565 FAD binding domain AFR_01910 PF04030 D-arabinono-1,4-lactone oxidase AFR_01915 PF00440 Bacterial regulatory proteins, tetR family AFR_01920 PF01168 Alanine racemase, N-terminal domain AFR_01925 PF02223 Thymidylate kinase AFR_01930 PF13177 DNA polymerase III, delta subunit AFR_01940 PF10824 Protein of unknown function (DUF2580) AFR_01955 PF04468 AFR_01955 AFR_01960 PF00239 Resolvase, N terminal domain AFR_01965 PF00149 Calcineurin-like phosphoesterase AFR_01975 PF14317 AFR_01975 AFR_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_01980 PF12729 AFR_01980 AFR_01985 PF07690 Major Facilitator Superfamily AFR_01990 PF00440 Bacterial regulatory proteins, tetR family AFR_01995 PF00132 Bacterial transferase hexapeptide (six repeats) AFR_01995 PF12464 Maltose acetyltransferase AFR_02000 PF01494 FAD binding domain AFR_02010 PF04149 AFR_02010 AFR_02015 PF04149 AFR_02015 AFR_02020 PF13560 Helix-turn-helix domain AFR_02035 PF06993 AFR_02035 AFR_02040 PF09990 AFR_02040 AFR_02045 PF01965 DJ-1/PfpI family AFR_02050 PF00293 NUDIX domain AFR_02055 PF02735 Ku70/Ku80 beta-barrel domain AFR_02060 PF01068 ATP dependent DNA ligase domain AFR_02060 PF04679 ATP dependent DNA ligase C terminal region AFR_02070 PF03551 Transcriptional regulator PadR-like family AFR_02080 PF04851 Type III restriction enzyme, res subunit AFR_02080 PF13625 AFR_02080 AFR_02080 PF16203 AFR_02080 AFR_02085 PF13625 AFR_02085 AFR_02095 PF12710 haloacid dehalogenase-like hydrolase AFR_02100 PF00313 'Cold-shock' DNA-binding domain AFR_02105 PF02621 Menaquinone biosynthesis AFR_02110 PF01048 Phosphorylase superfamily AFR_02115 PF07690 Major Facilitator Superfamily AFR_02120 PF11228 AFR_02120 AFR_02125 PF10745 AFR_02125 AFR_02130 PF00860 Permease family AFR_02135 PF01047 MarR family AFR_02140 PF05977 Transmembrane secretion effector AFR_02145 PF00291 Pyridoxal-phosphate dependent enzyme AFR_02150 PF00392 Bacterial regulatory proteins, gntR family AFR_02150 PF07729 FCD domain AFR_02155 PF07690 Major Facilitator Superfamily AFR_02165 PF13563 2'-5' RNA ligase superfamily AFR_02170 PF11268 AFR_02170 AFR_02180 PF04542 Sigma-70 region 2 AFR_02180 PF08281 Sigma-70, region 4 AFR_02185 PF00583 Acetyltransferase (GNAT) family AFR_02190 PF00155 Aminotransferase class I and II AFR_02195 PF00266 Aminotransferase class-V AFR_02200 PF00285 Citrate synthase AFR_02205 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_02205 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AFR_02210 PF05977 Transmembrane secretion effector AFR_02215 PF01263 Aldose 1-epimerase AFR_02220 PF00881 Nitroreductase family AFR_02230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_02230 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_02230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_02235 PF14014 AFR_02235 AFR_02240 PF04024 AFR_02240 AFR_02245 PF01066 CDP-alcohol phosphatidyltransferase AFR_02250 PF00535 Glycosyl transferase family 2 AFR_02250 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AFR_02255 PF00005 ABC transporter AFR_02260 PF13581 Histidine kinase-like ATPase domain AFR_02265 PF00702 haloacid dehalogenase-like hydrolase AFR_02270 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFR_02270 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFR_02270 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFR_02285 PF00005 ABC transporter AFR_02290 PF01061 AFR_02290 AFR_02295 PF00440 Bacterial regulatory proteins, tetR family AFR_02295 PF16859 AFR_02295 AFR_02300 PF00563 EAL domain AFR_02300 PF00990 GGDEF domain AFR_02300 PF08447 PAS fold AFR_02305 PF03663 Glycosyl hydrolase family 76 AFR_02315 PF04973 AFR_02315 AFR_02320 PF13521 AAA domain AFR_02330 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_02335 PF13302 Acetyltransferase (GNAT) domain AFR_02340 PF00990 GGDEF domain AFR_02350 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_02355 PF09362 AFR_02355 AFR_02360 PF03640 AFR_02360 AFR_02365 PF04542 Sigma-70 region 2 AFR_02365 PF04545 Sigma-70, region 4 AFR_02370 PF13490 Putative zinc-finger AFR_02375 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_02380 PF00440 Bacterial regulatory proteins, tetR family AFR_02380 PF16859 AFR_02380 AFR_02385 PF00581 Rhodanese-like domain AFR_02390 PF05995 Cysteine dioxygenase type I AFR_02395 PF00069 Protein kinase domain AFR_02400 PF00534 Glycosyl transferases group 1 AFR_02405 PF03080 AFR_02405 AFR_02410 PF04542 Sigma-70 region 2 AFR_02410 PF04545 Sigma-70, region 4 AFR_02415 PF13490 Putative zinc-finger AFR_02420 PF08281 Sigma-70, region 4 AFR_02430 PF04134 AFR_02430 AFR_02435 PF02653 AFR_02435 AFR_02440 PF02653 AFR_02440 AFR_02445 PF00005 ABC transporter AFR_02450 PF00703 Glycosyl hydrolases family 2 AFR_02450 PF02837 Glycosyl hydrolases family 2, sugar binding domain AFR_02450 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AFR_02455 PF13407 Periplasmic binding protein domain AFR_02460 PF11397 AFR_02460 AFR_02465 PF15567 AFR_02465 AFR_02490 PF15644 Papain fold toxin 1 AFR_02515 PF02575 YbaB/EbfC DNA-binding family AFR_02520 PF06013 Proteins of 100 residues with WXG AFR_02525 PF06013 Proteins of 100 residues with WXG AFR_02545 PF01580 FtsK/SpoIIIE family AFR_02550 PF08817 WXG100 protein secretion system (Wss), protein YukD AFR_02555 PF05108 Protein of unknown function (DUF690) AFR_02565 PF00004 ATPase family associated with various cellular activities (AAA) AFR_02565 PF13229 Right handed beta helix region AFR_02570 PF02575 YbaB/EbfC DNA-binding family AFR_02575 PF00486 Transcriptional regulatory protein, C terminal AFR_02575 PF03704 Bacterial transcriptional activator domain AFR_02575 PF13191 AAA ATPase domain AFR_02580 PF00486 Transcriptional regulatory protein, C terminal AFR_02580 PF03704 Bacterial transcriptional activator domain AFR_02580 PF13191 AAA ATPase domain AFR_02590 PF00196 Bacterial regulatory proteins, luxR family AFR_02610 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFR_02610 PF13641 Glycosyltransferase like family 2 AFR_02615 PF00440 Bacterial regulatory proteins, tetR family AFR_02620 PF02016 LD-carboxypeptidase AFR_02625 PF07690 Major Facilitator Superfamily AFR_02630 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_02635 PF00072 Response regulator receiver domain AFR_02640 PF13560 Helix-turn-helix domain AFR_02645 PF13657 HipA N-terminal domain AFR_02655 PF00563 EAL domain AFR_02655 PF00990 GGDEF domain AFR_02660 PF03819 MazG nucleotide pyrophosphohydrolase domain AFR_02670 PF02348 Cytidylyltransferase AFR_02685 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFR_02690 PF02719 Polysaccharide biosynthesis protein AFR_02695 PF00550 Phosphopantetheine attachment site AFR_02700 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_02705 PF00501 AMP-binding enzyme AFR_02710 PF04443 AFR_02710 AFR_02715 PF05893 Acyl-CoA reductase (LuxC) AFR_02720 PF00535 Glycosyl transferase family 2 AFR_02730 PF13788 AFR_02730 AFR_02735 PF12728 Helix-turn-helix domain AFR_02740 PF07883 Cupin domain AFR_02745 PF13602 Zinc-binding dehydrogenase AFR_02750 PF12802 MarR family AFR_02755 PF07690 Major Facilitator Superfamily AFR_02760 PF00144 Beta-lactamase AFR_02765 PF07730 Histidine kinase AFR_02765 PF13796 AFR_02765 AFR_02770 PF00072 Response regulator receiver domain AFR_02770 PF00196 Bacterial regulatory proteins, luxR family AFR_02780 PF03176 MMPL family AFR_02785 PF05532 CsbD-like AFR_02790 PF00563 EAL domain AFR_02790 PF00990 GGDEF domain AFR_02795 PF00535 Glycosyl transferase family 2 AFR_02800 PF13302 Acetyltransferase (GNAT) domain AFR_02805 PF03102 NeuB family AFR_02805 PF08666 SAF domain AFR_02825 PF13450 NAD(P)-binding Rossmann-like domain AFR_02830 PF02537 AFR_02830 AFR_02835 PF02537 AFR_02835 AFR_02840 PF04542 Sigma-70 region 2 AFR_02840 PF08281 Sigma-70, region 4 AFR_02845 PF14016 AFR_02845 AFR_02850 PF13828 AFR_02850 AFR_02850 PF13845 AFR_02850 AFR_02855 PF00563 EAL domain AFR_02855 PF00990 GGDEF domain AFR_02855 PF13185 GAF domain AFR_02860 PF00455 AFR_02860 AFR_02860 PF08220 DeoR-like helix-turn-helix domain AFR_02865 PF01547 Bacterial extracellular solute-binding protein AFR_02870 PF00528 Binding-protein-dependent transport system inner membrane component AFR_02875 PF00528 Binding-protein-dependent transport system inner membrane component AFR_02880 PF00107 Zinc-binding dehydrogenase AFR_02880 PF08240 Alcohol dehydrogenase GroES-like domain AFR_02885 PF13520 Amino acid permease AFR_02895 PF01047 MarR family AFR_02900 PF07690 Major Facilitator Superfamily AFR_02905 PF00440 Bacterial regulatory proteins, tetR family AFR_02910 PF07690 Major Facilitator Superfamily AFR_02915 PF00561 alpha/beta hydrolase fold AFR_02920 PF01513 ATP-NAD kinase AFR_02925 PF01169 AFR_02925 AFR_02930 PF04199 Putative cyclase AFR_02935 PF13432 Tetratricopeptide repeat AFR_02940 PF13432 Tetratricopeptide repeat AFR_02940 PF14559 Tetratricopeptide repeat AFR_02945 PF03706 AFR_02945 AFR_02950 PF07676 WD40-like Beta Propeller Repeat AFR_02955 PF04542 Sigma-70 region 2 AFR_02955 PF08281 Sigma-70, region 4 AFR_02960 PF02378 Phosphotransferase system, EIIC AFR_02965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AFR_02970 PF03448 MgtE intracellular N domain AFR_02975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AFR_02980 PF00381 PTS HPr component phosphorylation site AFR_02985 PF00391 PEP-utilising enzyme, mobile domain AFR_02985 PF02896 PEP-utilising enzyme, TIM barrel domain AFR_02985 PF05524 PEP-utilising enzyme, N-terminal AFR_02990 PF07070 AFR_02990 AFR_02995 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_03000 PF07690 Major Facilitator Superfamily AFR_03005 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_03010 PF00704 Glycosyl hydrolases family 18 AFR_03020 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AFR_03025 PF17164 AFR_03025 AFR_03030 PF13359 AFR_03030 AFR_03030 PF13613 AFR_03030 AFR_03040 PF03704 Bacterial transcriptional activator domain AFR_03045 PF01061 AFR_03045 AFR_03050 PF00005 ABC transporter AFR_03055 PF00106 short chain dehydrogenase AFR_03060 PF00743 Flavin-binding monooxygenase-like AFR_03065 PF04261 Dyp-type peroxidase family AFR_03075 PF09335 AFR_03075 AFR_03080 PF00754 F5/8 type C domain AFR_03080 PF07971 Glycosyl hydrolase family 92 AFR_03085 PF13298 DNA polymerase Ligase (LigD) AFR_03100 PF00128 Alpha amylase, catalytic domain AFR_03100 PF11941 Domain of unknown function (DUF3459) AFR_03105 PF04539 Sigma-70 region 3 AFR_03105 PF04542 Sigma-70 region 2 AFR_03105 PF04545 Sigma-70, region 4 AFR_03110 PF04234 CopC domain AFR_03115 PF04525 Tubby C 2 AFR_03120 PF00107 Zinc-binding dehydrogenase AFR_03120 PF08240 Alcohol dehydrogenase GroES-like domain AFR_03120 PF13823 Alcohol dehydrogenase GroES-associated AFR_03125 PF00106 short chain dehydrogenase AFR_03130 PF13560 Helix-turn-helix domain AFR_03135 PF00248 Aldo/keto reductase family AFR_03140 PF00754 F5/8 type C domain AFR_03145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_03145 PF12729 AFR_03145 AFR_03150 PF00398 Ribosomal RNA adenine dimethylase AFR_03160 PF07690 Major Facilitator Superfamily AFR_03165 PF12840 Helix-turn-helix domain AFR_03170 PF13649 Methyltransferase domain AFR_03175 PF00999 Sodium/hydrogen exchanger family AFR_03180 PF04198 Putative sugar-binding domain AFR_03180 PF04545 Sigma-70, region 4 AFR_03185 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_03190 PF00464 Serine hydroxymethyltransferase AFR_03195 PF03022 Major royal jelly protein AFR_03200 PF12850 Calcineurin-like phosphoesterase superfamily domain AFR_03205 PF00754 F5/8 type C domain AFR_03210 PF00356 Bacterial regulatory proteins, lacI family AFR_03210 PF13377 Periplasmic binding protein-like domain AFR_03215 PF13407 Periplasmic binding protein domain AFR_03220 PF02653 AFR_03220 AFR_03225 PF00005 ABC transporter AFR_03230 PF02311 AraC-like ligand binding domain AFR_03230 PF12833 Helix-turn-helix domain AFR_03235 PF12680 SnoaL-like domain AFR_03240 PF06134 L-rhamnose isomerase (RhaA) AFR_03245 PF05336 Domain of unknown function (DUF718) AFR_03250 PF13407 Periplasmic binding protein domain AFR_03255 PF02653 AFR_03255 AFR_03260 PF02653 AFR_03260 AFR_03265 PF00005 ABC transporter AFR_03270 PF00356 Bacterial regulatory proteins, lacI family AFR_03270 PF13377 Periplasmic binding protein-like domain AFR_03275 PF00596 Class II Aldolase and Adducin N-terminal domain AFR_03275 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_03280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_03280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_03285 PF02754 AFR_03285 AFR_03290 PF02589 Uncharacterised ACR, YkgG family COG1556 AFR_03290 PF11870 AFR_03290 AFR_03290 PF13183 4Fe-4S dicluster domain AFR_03295 PF02589 Uncharacterised ACR, YkgG family COG1556 AFR_03300 PF02610 L-arabinose isomerase AFR_03305 PF13460 NADH(P)-binding AFR_03310 PF00512 His Kinase A (phospho-acceptor) domain AFR_03310 PF00582 Universal stress protein family AFR_03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_03310 PF02702 Osmosensitive K+ channel His kinase sensor domain AFR_03310 PF13493 Domain of unknown function (DUF4118) AFR_03315 PF00440 Bacterial regulatory proteins, tetR family AFR_03320 PF00005 ABC transporter AFR_03330 PF00999 Sodium/hydrogen exchanger family AFR_03335 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFR_03335 PF05221 S-adenosyl-L-homocysteine hydrolase AFR_03340 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AFR_03345 PF00356 Bacterial regulatory proteins, lacI family AFR_03345 PF13407 Periplasmic binding protein domain AFR_03350 PF03795 YCII-related domain AFR_03355 PF04542 Sigma-70 region 2 AFR_03355 PF08281 Sigma-70, region 4 AFR_03360 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_03365 PF01261 Xylose isomerase-like TIM barrel AFR_03370 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_03370 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_03375 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_03380 PF01435 Peptidase family M48 AFR_03385 PF01327 Polypeptide deformylase AFR_03390 PF13649 Methyltransferase domain AFR_03395 PF00067 Cytochrome P450 AFR_03415 PF06965 Na+/H+ antiporter 1 AFR_03425 PF00005 ABC transporter AFR_03430 PF07730 Histidine kinase AFR_03435 PF00072 Response regulator receiver domain AFR_03435 PF00196 Bacterial regulatory proteins, luxR family AFR_03445 PF07690 Major Facilitator Superfamily AFR_03450 PF12840 Helix-turn-helix domain AFR_03455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_03455 PF00672 HAMP domain AFR_03465 PF00133 tRNA synthetases class I (I, L, M and V) AFR_03465 PF08264 Anticodon-binding domain of tRNA AFR_03470 PF01300 Telomere recombination AFR_03475 PF14534 Domain of unknown function (DUF4440) AFR_03480 PF12802 MarR family AFR_03490 PF00990 GGDEF domain AFR_03495 PF03358 NADPH-dependent FMN reductase AFR_03500 PF12802 MarR family AFR_03505 PF00296 Luciferase-like monooxygenase AFR_03505 PF01565 FAD binding domain AFR_03505 PF08031 Berberine and berberine like AFR_03510 PF00296 Luciferase-like monooxygenase AFR_03515 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFR_03520 PF00196 Bacterial regulatory proteins, luxR family AFR_03525 PF08240 Alcohol dehydrogenase GroES-like domain AFR_03525 PF13602 Zinc-binding dehydrogenase AFR_03530 PF12708 Pectate lyase superfamily protein AFR_03535 PF03473 MOSC domain AFR_03535 PF03476 MOSC N-terminal beta barrel domain AFR_03540 PF12840 Helix-turn-helix domain AFR_03545 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_03555 PF01872 RibD C-terminal domain AFR_03560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_03560 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_03565 PF00440 Bacterial regulatory proteins, tetR family AFR_03565 PF13305 WHG domain AFR_03570 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_03585 PF03713 Domain of unknown function (DUF305) AFR_03590 PF08309 AFR_03590 AFR_03595 PF13649 Methyltransferase domain AFR_03600 PF01476 LysM domain AFR_03600 PF13539 D-alanyl-D-alanine carboxypeptidase AFR_03605 PF12277 AFR_03605 AFR_03610 PF07332 AFR_03610 AFR_03630 PF00884 Sulfatase AFR_03635 PF04055 Radical SAM superfamily AFR_03645 PF01625 Peptide methionine sulfoxide reductase AFR_03650 PF04542 Sigma-70 region 2 AFR_03650 PF08281 Sigma-70, region 4 AFR_03650 PF12680 SnoaL-like domain AFR_03655 PF12680 SnoaL-like domain AFR_03660 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AFR_03675 PF00246 Zinc carboxypeptidase AFR_03680 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AFR_03690 PF00652 Ricin-type beta-trefoil lectin domain AFR_03690 PF05593 AFR_03690 AFR_03690 PF07591 Pretoxin HINT domain AFR_03705 PF00652 Ricin-type beta-trefoil lectin domain AFR_03705 PF07591 Pretoxin HINT domain AFR_03725 PF00440 Bacterial regulatory proteins, tetR family AFR_03730 PF12697 Alpha/beta hydrolase family AFR_03735 PF12833 Helix-turn-helix domain AFR_03735 PF12852 Cupin AFR_03740 PF05368 NmrA-like family AFR_03745 PF00005 ABC transporter AFR_03745 PF00664 ABC transporter transmembrane region AFR_03750 PF00005 ABC transporter AFR_03750 PF00664 ABC transporter transmembrane region AFR_03755 PF08279 HTH domain AFR_03755 PF13280 AFR_03755 AFR_03760 PF01042 Endoribonuclease L-PSP AFR_03780 PF00072 Response regulator receiver domain AFR_03780 PF00196 Bacterial regulatory proteins, luxR family AFR_03795 PF00331 Glycosyl hydrolase family 10 AFR_03800 PF00589 Phage integrase family AFR_03810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_03810 PF03466 LysR substrate binding domain AFR_03815 PF12680 SnoaL-like domain AFR_03825 PF00196 Bacterial regulatory proteins, luxR family AFR_03830 PF00196 Bacterial regulatory proteins, luxR family AFR_03840 PF13466 STAS domain AFR_03845 PF13581 Histidine kinase-like ATPase domain AFR_03855 PF00107 Zinc-binding dehydrogenase AFR_03865 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_03870 PF00285 Citrate synthase AFR_03875 PF02515 CoA-transferase family III AFR_03880 PF01979 Amidohydrolase family AFR_03885 PF01614 Bacterial transcriptional regulator AFR_03885 PF09339 IclR helix-turn-helix domain AFR_03890 PF13302 Acetyltransferase (GNAT) domain AFR_03895 PF06224 AFR_03895 AFR_03900 PF13649 Methyltransferase domain AFR_03905 PF01979 Amidohydrolase family AFR_03910 PF00440 Bacterial regulatory proteins, tetR family AFR_03910 PF16859 AFR_03910 AFR_03915 PF11239 AFR_03915 AFR_03920 PF00535 Glycosyl transferase family 2 AFR_03920 PF04138 AFR_03920 AFR_03925 PF13231 AFR_03925 AFR_03930 PF00793 DAHP synthetase I family AFR_03940 PF00512 His Kinase A (phospho-acceptor) domain AFR_03940 PF00672 HAMP domain AFR_03940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_03945 PF00072 Response regulator receiver domain AFR_03945 PF00486 Transcriptional regulatory protein, C terminal AFR_03955 PF13540 Regulator of chromosome condensation (RCC1) repeat AFR_03965 PF14559 Tetratricopeptide repeat AFR_03970 PF01713 Smr domain AFR_03975 PF04389 Peptidase family M28 AFR_03985 PF00072 Response regulator receiver domain AFR_03985 PF07228 Stage II sporulation protein E (SpoIIE) AFR_03990 PF00512 His Kinase A (phospho-acceptor) domain AFR_03990 PF00672 HAMP domain AFR_03990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_03990 PF05227 CHASE3 domain AFR_03995 PF00072 Response regulator receiver domain AFR_04000 PF00459 Inositol monophosphatase family AFR_04005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_04010 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_04025 PF00069 Protein kinase domain AFR_04025 PF00553 Cellulose binding domain AFR_04030 PF02080 TrkA-C domain AFR_04030 PF02254 TrkA-N domain AFR_04035 PF02386 Cation transport protein AFR_04040 PF05977 Transmembrane secretion effector AFR_04045 PF13649 Methyltransferase domain AFR_04050 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_04055 PF12680 SnoaL-like domain AFR_04065 PF00270 DEAD/DEAH box helicase AFR_04065 PF00271 Helicase conserved C-terminal domain AFR_04070 PF00877 NlpC/P60 family AFR_04075 PF02583 Metal-sensitive transcriptional repressor AFR_04080 PF00403 Heavy-metal-associated domain AFR_04090 PF13679 AFR_04090 AFR_04095 PF01126 Heme oxygenase AFR_04100 PF10615 Protein of unknown function (DUF2470) AFR_04105 PF00270 DEAD/DEAH box helicase AFR_04105 PF00271 Helicase conserved C-terminal domain AFR_04110 PF11305 AFR_04110 AFR_04115 PF00440 Bacterial regulatory proteins, tetR family AFR_04125 PF12697 Alpha/beta hydrolase family AFR_04130 PF11350 AFR_04130 AFR_04140 PF11350 AFR_04140 AFR_04145 PF00581 Rhodanese-like domain AFR_04145 PF00899 ThiF family AFR_04150 PF00432 Prenyltransferase and squalene oxidase repeat AFR_04155 PF00171 Aldehyde dehydrogenase family AFR_04160 PF00696 Amino acid kinase family AFR_04160 PF01472 PUA domain AFR_04165 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFR_04170 PF04072 Leucine carboxyl methyltransferase AFR_04175 PF00440 Bacterial regulatory proteins, tetR family AFR_04180 PF01370 NAD dependent epimerase/dehydratase family AFR_04185 PF01019 Gamma-glutamyltranspeptidase AFR_04190 PF13347 MFS/sugar transport protein AFR_04195 PF01636 Phosphotransferase enzyme family AFR_04200 PF04029 2-phosphosulpholactate phosphatase AFR_04205 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFR_04210 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AFR_04215 PF10009 AFR_04215 AFR_04225 PF04542 Sigma-70 region 2 AFR_04225 PF08281 Sigma-70, region 4 AFR_04230 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AFR_04235 PF00146 NADH dehydrogenase AFR_04240 PF00144 Beta-lactamase AFR_04250 PF00037 4Fe-4S binding domain AFR_04255 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AFR_04260 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFR_04265 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFR_04265 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFR_04270 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFR_04275 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFR_04280 PF01435 Peptidase family M48 AFR_04285 PF07690 Major Facilitator Superfamily AFR_04290 PF07690 Major Facilitator Superfamily AFR_04295 PF00392 Bacterial regulatory proteins, gntR family AFR_04295 PF07702 UTRA domain AFR_04300 PF00652 Ricin-type beta-trefoil lectin domain AFR_04305 PF01551 Peptidase family M23 AFR_04310 PF00440 Bacterial regulatory proteins, tetR family AFR_04315 PF00296 Luciferase-like monooxygenase AFR_04320 PF08445 FR47-like protein AFR_04325 PF03473 MOSC domain AFR_04330 PF13546 AFR_04330 AFR_04340 PF04542 Sigma-70 region 2 AFR_04340 PF13181 Tetratricopeptide repeat AFR_04345 PF03795 YCII-related domain AFR_04350 PF06224 AFR_04350 AFR_04360 PF01872 RibD C-terminal domain AFR_04365 PF12833 Helix-turn-helix domain AFR_04375 PF07859 alpha/beta hydrolase fold AFR_04380 PF04461 Protein of unknown function (DUF520) AFR_04390 PF00581 Rhodanese-like domain AFR_04400 PF00563 EAL domain AFR_04400 PF00990 GGDEF domain AFR_04400 PF01590 GAF domain AFR_04405 PF00471 Ribosomal protein L33 AFR_04410 PF13452 N-terminal half of MaoC dehydratase AFR_04415 PF01575 MaoC like domain AFR_04420 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AFR_04425 PF02357 Transcription termination factor nusG AFR_04430 PF00687 Ribosomal protein L1p/L10e family AFR_04435 PF00005 ABC transporter AFR_04445 PF00466 Ribosomal protein L10 AFR_04455 PF00542 Ribosomal protein L7/L12 C-terminal domain AFR_04455 PF16320 AFR_04455 AFR_04460 PF00562 RNA polymerase Rpb2, domain 6 AFR_04460 PF04560 RNA polymerase Rpb2, domain 7 AFR_04460 PF04561 RNA polymerase Rpb2, domain 2 AFR_04460 PF04563 RNA polymerase beta subunit AFR_04460 PF04565 RNA polymerase Rpb2, domain 3 AFR_04460 PF10385 RNA polymerase beta subunit external 1 domain AFR_04465 PF00623 RNA polymerase Rpb1, domain 2 AFR_04465 PF04983 RNA polymerase Rpb1, domain 3 AFR_04465 PF04997 RNA polymerase Rpb1, domain 1 AFR_04465 PF04998 RNA polymerase Rpb1, domain 5 AFR_04465 PF05000 RNA polymerase Rpb1, domain 4 AFR_04480 PF00164 Ribosomal protein S12/S23 AFR_04485 PF00177 Ribosomal protein S7p/S5e AFR_04490 PF00009 Elongation factor Tu GTP binding domain AFR_04490 PF00679 Elongation factor G C-terminus AFR_04490 PF03144 Elongation factor Tu domain 2 AFR_04490 PF03764 Elongation factor G, domain IV AFR_04490 PF14492 Elongation Factor G, domain II AFR_04495 PF00009 Elongation factor Tu GTP binding domain AFR_04495 PF03143 Elongation factor Tu C-terminal domain AFR_04495 PF03144 Elongation factor Tu domain 2 AFR_04500 PF00338 Ribosomal protein S10p/S20e AFR_04505 PF00297 Ribosomal protein L3 AFR_04510 PF00573 Ribosomal protein L4/L1 family AFR_04515 PF00276 Ribosomal protein L23 AFR_04520 PF00181 Ribosomal Proteins L2, RNA binding domain AFR_04520 PF03947 Ribosomal Proteins L2, C-terminal domain AFR_04525 PF00203 Ribosomal protein S19 AFR_04530 PF00237 Ribosomal protein L22p/L17e AFR_04535 PF00189 Ribosomal protein S3, C-terminal domain AFR_04535 PF07650 KH domain AFR_04540 PF00252 Ribosomal protein L16p/L10e AFR_04545 PF00831 Ribosomal L29 protein AFR_04550 PF00366 Ribosomal protein S17 AFR_04555 PF00238 Ribosomal protein L14p/L23e AFR_04560 PF00467 KOW motif AFR_04560 PF17136 AFR_04560 AFR_04565 PF00281 Ribosomal protein L5 AFR_04565 PF00673 ribosomal L5P family C-terminus AFR_04570 PF00253 Ribosomal protein S14p/S29e AFR_04575 PF00410 Ribosomal protein S8 AFR_04580 PF00347 Ribosomal protein L6 AFR_04585 PF00861 Ribosomal L18p/L5e family AFR_04590 PF00333 Ribosomal protein S5, N-terminal domain AFR_04590 PF03719 Ribosomal protein S5, C-terminal domain AFR_04595 PF00327 Ribosomal protein L30p/L7e AFR_04600 PF00828 Ribosomal protein L18e/L15 AFR_04605 PF00344 SecY translocase AFR_04610 PF00406 Adenylate kinase AFR_04610 PF05191 Adenylate kinase, active site lid AFR_04615 PF00557 Metallopeptidase family M24 AFR_04620 PF08044 AFR_04620 AFR_04625 PF08044 AFR_04625 AFR_04630 PF01176 Translation initiation factor 1A / IF-1 AFR_04635 PF00444 Ribosomal protein L36 AFR_04640 PF00416 Ribosomal protein S13/S18 AFR_04645 PF00411 Ribosomal protein S11 AFR_04650 PF00163 Ribosomal protein S4/S9 N-terminal domain AFR_04650 PF01479 S4 domain AFR_04655 PF01000 RNA polymerase Rpb3/RpoA insert domain AFR_04655 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AFR_04655 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AFR_04660 PF01196 Ribosomal protein L17 AFR_04665 PF01416 tRNA pseudouridine synthase AFR_04675 PF05175 Methyltransferase small domain AFR_04680 PF00005 ABC transporter AFR_04690 PF02581 Thiamine monophosphate synthase/TENI AFR_04695 PF01266 FAD dependent oxidoreductase AFR_04700 PF02597 ThiS family AFR_04705 PF05690 Thiazole biosynthesis protein ThiG AFR_04710 PF02581 Thiamine monophosphate synthase/TENI AFR_04715 PF08543 Phosphomethylpyrimidine kinase AFR_04720 PF01964 ThiC family AFR_04720 PF13667 ThiC-associated domain AFR_04735 PF00296 Luciferase-like monooxygenase AFR_04740 PF00005 ABC transporter AFR_04745 PF09084 NMT1/THI5 like AFR_04750 PF00528 Binding-protein-dependent transport system inner membrane component AFR_04755 PF13458 Periplasmic binding protein AFR_04760 PF00672 HAMP domain AFR_04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_04760 PF08376 Nitrate and nitrite sensing AFR_04765 PF03259 Roadblock/LC7 domain AFR_04770 PF05331 AFR_04770 AFR_04775 PF03029 Conserved hypothetical ATP binding protein AFR_04780 PF00486 Transcriptional regulatory protein, C terminal AFR_04780 PF02602 Uroporphyrinogen-III synthase HemD AFR_04785 PF00572 Ribosomal protein L13 AFR_04790 PF00380 Ribosomal protein S9/S16 AFR_04795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFR_04795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFR_04795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFR_04795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFR_04800 PF00155 Aminotransferase class I and II AFR_04805 PF05423 Mycobacterium membrane protein AFR_04810 PF01380 SIS domain AFR_04810 PF13522 Glutamine amidotransferase domain AFR_04815 PF06259 Alpha/beta hydrolase AFR_04820 PF10824 Protein of unknown function (DUF2580) AFR_04825 PF01648 4'-phosphopantetheinyl transferase superfamily AFR_04830 PF01256 Carbohydrate kinase AFR_04830 PF03853 YjeF-related protein N-terminus AFR_04835 PF00842 Alanine racemase, C-terminal domain AFR_04835 PF01168 Alanine racemase, N-terminal domain AFR_04840 PF00561 alpha/beta hydrolase fold AFR_04845 PF02367 Uncharacterised P-loop hydrolase UPF0079 AFR_04850 PF03167 Uracil DNA glycosylase superfamily AFR_04855 PF00814 Glycoprotease family AFR_04860 PF00583 Acetyltransferase (GNAT) family AFR_04865 PF00814 Glycoprotease family AFR_04875 PF00005 ABC transporter AFR_04875 PF00664 ABC transporter transmembrane region AFR_04880 PF00005 ABC transporter AFR_04880 PF00664 ABC transporter transmembrane region AFR_04885 PF00480 ROK family AFR_04890 PF02653 AFR_04890 AFR_04895 PF00005 ABC transporter AFR_04900 PF13407 Periplasmic binding protein domain AFR_04905 PF04073 Aminoacyl-tRNA editing domain AFR_04910 PF08241 Methyltransferase domain AFR_04915 PF00166 Chaperonin 10 Kd subunit AFR_04920 PF00118 TCP-1/cpn60 chaperonin family AFR_04930 PF00174 Oxidoreductase molybdopterin binding domain AFR_04935 PF02467 AFR_04935 AFR_04940 PF00196 Bacterial regulatory proteins, luxR family AFR_04945 PF17252 AFR_04945 AFR_04950 PF00478 IMP dehydrogenase / GMP reductase domain AFR_04950 PF00571 CBS domain AFR_04955 PF00478 IMP dehydrogenase / GMP reductase domain AFR_04960 PF01433 Peptidase family M1 AFR_04965 PF03816 Cell envelope-related transcriptional attenuator domain AFR_04970 PF00082 Subtilase family AFR_04975 PF00082 Subtilase family AFR_04980 PF00117 Glutamine amidotransferase class-I AFR_04980 PF00958 GMP synthase C terminal domain AFR_04980 PF02540 NAD synthase AFR_04985 PF04024 AFR_04985 AFR_04990 PF00293 NUDIX domain AFR_04995 PF00293 NUDIX domain AFR_05000 PF01066 CDP-alcohol phosphatidyltransferase AFR_05005 PF02666 AFR_05005 AFR_05015 PF04024 AFR_05015 AFR_05015 PF09922 Cell wall-active antibiotics response protein (DUF2154) AFR_05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_05025 PF00072 Response regulator receiver domain AFR_05025 PF00196 Bacterial regulatory proteins, luxR family AFR_05030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_05035 PF00528 Binding-protein-dependent transport system inner membrane component AFR_05040 PF00528 Binding-protein-dependent transport system inner membrane component AFR_05040 PF12911 AFR_05040 AFR_05045 PF00005 ABC transporter AFR_05045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_05050 PF00005 ABC transporter AFR_05050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_05055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_05060 PF01817 Chorismate mutase type II AFR_05065 PF00149 Calcineurin-like phosphoesterase AFR_05065 PF02872 5'-nucleotidase, C-terminal domain AFR_05070 PF00580 UvrD/REP helicase N-terminal domain AFR_05070 PF13361 UvrD-like helicase C-terminal domain AFR_05075 PF01551 Peptidase family M23 AFR_05080 PF01551 Peptidase family M23 AFR_05085 PF02310 B12 binding domain AFR_05090 PF00549 CoA-ligase AFR_05090 PF08442 ATP-grasp domain AFR_05095 PF00549 CoA-ligase AFR_05095 PF02629 CoA binding domain AFR_05110 PF00551 Formyl transferase AFR_05115 PF01808 AICARFT/IMPCHase bienzyme AFR_05115 PF02142 MGS-like domain AFR_05120 PF00805 Pentapeptide repeats (8 copies) AFR_05120 PF13599 Pentapeptide repeats (9 copies) AFR_05125 PF00056 lactate/malate dehydrogenase, NAD binding domain AFR_05125 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AFR_05130 PF00753 Metallo-beta-lactamase superfamily AFR_05135 PF09423 PhoD-like phosphatase AFR_05135 PF16655 AFR_05135 AFR_05140 PF00180 Isocitrate/isopropylmalate dehydrogenase AFR_05145 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AFR_05145 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AFR_05150 PF00455 AFR_05150 AFR_05150 PF08220 DeoR-like helix-turn-helix domain AFR_05155 PF00535 Glycosyl transferase family 2 AFR_05160 PF00685 Sulfotransferase domain AFR_05165 PF03808 AFR_05165 AFR_05175 PF02156 Glycosyl hydrolase family 26 AFR_05180 PF13489 Methyltransferase domain AFR_05185 PF01943 AFR_05185 AFR_05185 PF14667 Polysaccharide biosynthesis C-terminal domain AFR_05190 PF00685 Sulfotransferase domain AFR_05205 PF13807 AFR_05205 AFR_05210 PF01583 Adenylylsulphate kinase AFR_05210 PF01747 ATP-sulfurylase AFR_05210 PF14306 PUA-like domain AFR_05215 PF02156 Glycosyl hydrolase family 26 AFR_05220 PF00005 ABC transporter AFR_05230 PF00005 ABC transporter AFR_05235 PF12730 AFR_05235 AFR_05240 PF13304 AAA domain AFR_05245 PF13411 MerR HTH family regulatory protein AFR_05250 PF00106 short chain dehydrogenase AFR_05255 PF00311 Phosphoenolpyruvate carboxylase AFR_05260 PF01186 AFR_05260 AFR_05265 PF01453 D-mannose binding lectin AFR_05270 PF01341 Glycosyl hydrolases family 6 AFR_05275 PF09118 Domain of unknown function (DUF1929) AFR_05280 PF13506 Glycosyl transferase family 21 AFR_05285 PF00378 Enoyl-CoA hydratase/isomerase family AFR_05285 PF00551 Formyl transferase AFR_05285 PF02911 Formyl transferase, C-terminal domain AFR_05290 PF00270 DEAD/DEAH box helicase AFR_05290 PF00271 Helicase conserved C-terminal domain AFR_05290 PF02559 CarD-like/TRCF domain AFR_05290 PF03461 TRCF domain AFR_05300 PF03819 MazG nucleotide pyrophosphohydrolase domain AFR_05305 PF05960 Bacterial protein of unknown function (DUF885) AFR_05310 PF02661 Fic/DOC family AFR_05310 PF13784 Fic/DOC family N-terminal AFR_05325 PF00113 Enolase, C-terminal TIM barrel domain AFR_05325 PF03952 Enolase, N-terminal domain AFR_05330 PF04977 Septum formation initiator AFR_05335 PF04417 AFR_05335 AFR_05340 PF00583 Acetyltransferase (GNAT) family AFR_05345 PF02541 Ppx/GppA phosphatase family AFR_05350 PF03551 Transcriptional regulator PadR-like family AFR_05365 PF03167 Uracil DNA glycosylase superfamily AFR_05370 PF13559 AFR_05370 AFR_05380 PF07726 ATPase family associated with various cellular activities (AAA) AFR_05385 PF01882 AFR_05385 AFR_05395 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_05400 PF12811 AFR_05400 AFR_05410 PF00108 Thiolase, N-terminal domain AFR_05410 PF02803 Thiolase, C-terminal domain AFR_05415 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_05420 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_05425 PF06803 AFR_05425 AFR_05430 PF00291 Pyridoxal-phosphate dependent enzyme AFR_05430 PF00571 CBS domain AFR_05445 PF00990 GGDEF domain AFR_05450 PF01928 CYTH domain AFR_05450 PF05235 CHAD domain AFR_05455 PF03976 Polyphosphate kinase 2 (PPK2) AFR_05460 PF12706 Beta-lactamase superfamily domain AFR_05465 PF00583 Acetyltransferase (GNAT) family AFR_05475 PF13180 PDZ domain AFR_05475 PF13365 Trypsin-like peptidase domain AFR_05485 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AFR_05495 PF01625 Peptide methionine sulfoxide reductase AFR_05500 PF01230 HIT domain AFR_05505 PF01053 Cys/Met metabolism PLP-dependent enzyme AFR_05510 PF01425 Amidase AFR_05515 PF00291 Pyridoxal-phosphate dependent enzyme AFR_05520 PF01272 Transcription elongation factor, GreA/GreB, C-term AFR_05520 PF03449 Transcription elongation factor, N-terminal AFR_05525 PF14155 AFR_05525 AFR_05530 PF02585 GlcNAc-PI de-N-acetylase AFR_05540 PF00563 EAL domain AFR_05540 PF00990 GGDEF domain AFR_05545 PF03190 Protein of unknown function, DUF255 AFR_05545 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AFR_05550 PF02222 ATP-grasp domain AFR_05555 PF00731 AIR carboxylase AFR_05565 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_05565 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_05565 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_05570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_05570 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_05570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_05580 PF00069 Protein kinase domain AFR_05585 PF01494 FAD binding domain AFR_05590 PF01047 MarR family AFR_05595 PF13560 Helix-turn-helix domain AFR_05600 PF00753 Metallo-beta-lactamase superfamily AFR_05605 PF13646 HEAT repeats AFR_05615 PF03061 Thioesterase superfamily AFR_05620 PF00501 AMP-binding enzyme AFR_05620 PF13193 AMP-binding enzyme C-terminal domain AFR_05620 PF16177 AFR_05620 AFR_05625 PF00501 AMP-binding enzyme AFR_05630 PF00534 Glycosyl transferases group 1 AFR_05630 PF13439 Glycosyltransferase Family 4 AFR_05635 PF00483 Nucleotidyl transferase AFR_05635 PF01050 Mannose-6-phosphate isomerase AFR_05640 PF00293 NUDIX domain AFR_05645 PF01996 F420-0:Gamma-glutamyl ligase AFR_05650 PF01933 Uncharacterised protein family UPF0052 AFR_05660 PF04055 Radical SAM superfamily AFR_05665 PF02467 AFR_05665 AFR_05670 PF06262 Possibl zinc metallo-peptidase AFR_05675 PF12005 AFR_05675 AFR_05680 PF01522 Polysaccharide deacetylase AFR_05685 PF11937 AFR_05685 AFR_05690 PF00171 Aldehyde dehydrogenase family AFR_05695 PF01590 GAF domain AFR_05700 PF00171 Aldehyde dehydrogenase family AFR_05705 PF05610 AFR_05705 AFR_05710 PF04493 Endonuclease V AFR_05715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFR_05715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFR_05715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFR_05715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFR_05720 PF03966 Trm112p-like protein AFR_05725 PF10432 Bacterial phospho-glucose isomerase C-terminal region AFR_05730 PF01545 Cation efflux family AFR_05735 PF01238 Phosphomannose isomerase type I AFR_05740 PF13560 Helix-turn-helix domain AFR_05745 PF04149 AFR_05745 AFR_05750 PF03239 AFR_05750 AFR_05755 PF09375 Imelysin AFR_05755 PF13473 Cupredoxin-like domain AFR_05760 PF04261 Dyp-type peroxidase family AFR_05765 PF00072 Response regulator receiver domain AFR_05765 PF00486 Transcriptional regulatory protein, C terminal AFR_05770 PF00512 His Kinase A (phospho-acceptor) domain AFR_05770 PF00672 HAMP domain AFR_05770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_05775 PF10647 AFR_05775 AFR_05785 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFR_05785 PF16321 AFR_05785 AFR_05790 PF13302 Acetyltransferase (GNAT) domain AFR_05795 PF13302 Acetyltransferase (GNAT) domain AFR_05800 PF01043 SecA preprotein cross-linking domain AFR_05800 PF02810 SEC-C motif AFR_05800 PF07516 SecA Wing and Scaffold domain AFR_05800 PF07517 SecA DEAD-like domain AFR_05805 PF12728 Helix-turn-helix domain AFR_05810 PF01037 AsnC family AFR_05810 PF13404 AsnC-type helix-turn-helix domain AFR_05815 PF00581 Rhodanese-like domain AFR_05830 PF00171 Aldehyde dehydrogenase family AFR_05835 PF10400 Virulence activator alpha C-term AFR_05840 PF00472 RF-1 domain AFR_05840 PF03462 PCRF domain AFR_05845 PF00005 ABC transporter AFR_05855 PF01551 Peptidase family M23 AFR_05860 PF01668 SmpB protein AFR_05865 PF00553 Cellulose binding domain AFR_05880 PF00196 Bacterial regulatory proteins, luxR family AFR_05890 PF01048 Phosphorylase superfamily AFR_05895 PF02622 Uncharacterized ACR, COG1678 AFR_05910 PF00486 Transcriptional regulatory protein, C terminal AFR_05910 PF03704 Bacterial transcriptional activator domain AFR_05915 PF13556 PucR C-terminal helix-turn-helix domain AFR_05920 PF07859 alpha/beta hydrolase fold AFR_05925 PF00296 Luciferase-like monooxygenase AFR_05930 PF00392 Bacterial regulatory proteins, gntR family AFR_05930 PF07729 FCD domain AFR_05935 PF13360 PQQ-like domain AFR_05940 PF13411 MerR HTH family regulatory protein AFR_05950 PF07963 Prokaryotic N-terminal methylation motif AFR_05955 PF07963 Prokaryotic N-terminal methylation motif AFR_05960 PF04350 Pilus assembly protein, PilO AFR_05970 PF11104 Type IV pilus assembly protein PilM; AFR_05975 PF01478 Type IV leader peptidase family AFR_05975 PF06750 AFR_05975 AFR_05980 PF07963 Prokaryotic N-terminal methylation motif AFR_05985 PF00482 Type II secretion system (T2SS), protein F AFR_05990 PF00437 Type II/IV secretion system protein AFR_05995 PF00437 Type II/IV secretion system protein AFR_05995 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AFR_06000 PF01965 DJ-1/PfpI family AFR_06000 PF12833 Helix-turn-helix domain AFR_06005 PF07690 Major Facilitator Superfamily AFR_06010 PF02031 Streptomyces extracellular neutral proteinase (M7) family AFR_06020 PF13466 STAS domain AFR_06025 PF13374 Tetratricopeptide repeat AFR_06025 PF13424 Tetratricopeptide repeat AFR_06030 PF00072 Response regulator receiver domain AFR_06035 PF00512 His Kinase A (phospho-acceptor) domain AFR_06035 PF00989 PAS fold AFR_06035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_06035 PF13185 GAF domain AFR_06040 PF00072 Response regulator receiver domain AFR_06045 PF12802 MarR family AFR_06050 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_06055 PF00563 EAL domain AFR_06055 PF00990 GGDEF domain AFR_06080 PF04248 Domain of unknown function (DUF427) AFR_06100 PF01590 GAF domain AFR_06100 PF07228 Stage II sporulation protein E (SpoIIE) AFR_06110 PF09250 Bifunctional DNA primase/polymerase, N-terminal AFR_06125 PF14350 AFR_06125 AFR_06130 PF13604 AAA domain AFR_06145 PF00082 Subtilase family AFR_06160 PF00440 Bacterial regulatory proteins, tetR family AFR_06160 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_06165 PF00005 ABC transporter AFR_06165 PF13732 AFR_06165 AFR_06170 PF01061 AFR_06170 AFR_06175 PF00392 Bacterial regulatory proteins, gntR family AFR_06175 PF07729 FCD domain AFR_06180 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AFR_06185 PF01177 Asp/Glu/Hydantoin racemase AFR_06190 PF00291 Pyridoxal-phosphate dependent enzyme AFR_06195 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_06205 PF13087 AAA domain AFR_06205 PF13604 AAA domain AFR_06210 PF01965 DJ-1/PfpI family AFR_06210 PF12833 Helix-turn-helix domain AFR_06215 PF07883 Cupin domain AFR_06220 PF04471 Restriction endonuclease AFR_06225 PF00563 EAL domain AFR_06225 PF00990 GGDEF domain AFR_06225 PF08447 PAS fold AFR_06230 PF07883 Cupin domain AFR_06235 PF12802 MarR family AFR_06245 PF04536 TLP18 AFR_06250 PF00107 Zinc-binding dehydrogenase AFR_06250 PF08240 Alcohol dehydrogenase GroES-like domain AFR_06255 PF00753 Metallo-beta-lactamase superfamily AFR_06270 PF01068 ATP dependent DNA ligase domain AFR_06270 PF13298 DNA polymerase Ligase (LigD) AFR_06275 PF12833 Helix-turn-helix domain AFR_06280 PF01494 FAD binding domain AFR_06285 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFR_06290 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_06295 PF07690 Major Facilitator Superfamily AFR_06300 PF13460 NADH(P)-binding AFR_06305 PF07690 Major Facilitator Superfamily AFR_06310 PF00857 Isochorismatase family AFR_06315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFR_06320 PF00196 Bacterial regulatory proteins, luxR family AFR_06325 PF02617 ATP-dependent Clp protease adaptor protein ClpS AFR_06330 PF09438 AFR_06330 AFR_06335 PF00248 Aldo/keto reductase family AFR_06340 PF14464 Prokaryotic homologs of the JAB domain AFR_06345 PF02597 ThiS family AFR_06350 PF00291 Pyridoxal-phosphate dependent enzyme AFR_06360 PF12706 Beta-lactamase superfamily domain AFR_06365 PF00534 Glycosyl transferases group 1 AFR_06365 PF13579 Glycosyl transferase 4-like domain AFR_06370 PF01138 3' exoribonuclease family, domain 1 AFR_06370 PF03725 3' exoribonuclease family, domain 2 AFR_06375 PF01725 Ham1 family AFR_06385 PF00005 ABC transporter AFR_06390 PF12840 Helix-turn-helix domain AFR_06400 PF05704 AFR_06400 AFR_06405 PF00221 Aromatic amino acid lyase AFR_06410 PF01979 Amidohydrolase family AFR_06415 PF01979 Amidohydrolase family AFR_06420 PF01546 Peptidase family M20/M25/M40 AFR_06425 PF01175 Urocanase AFR_06425 PF17391 AFR_06425 AFR_06425 PF17392 AFR_06425 AFR_06430 PF01380 SIS domain AFR_06430 PF01418 Helix-turn-helix domain, rpiR family AFR_06435 PF03473 MOSC domain AFR_06435 PF03476 MOSC N-terminal beta barrel domain AFR_06440 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel AFR_06445 PF13673 Acetyltransferase (GNAT) domain AFR_06455 PF03551 Transcriptional regulator PadR-like family AFR_06455 PF10400 Virulence activator alpha C-term AFR_06460 PF12680 SnoaL-like domain AFR_06470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_06470 PF00672 HAMP domain AFR_06470 PF12729 AFR_06470 AFR_06475 PF00578 AhpC/TSA family AFR_06485 PF13462 Thioredoxin AFR_06490 PF07291 AFR_06490 AFR_06495 PF04542 Sigma-70 region 2 AFR_06495 PF08281 Sigma-70, region 4 AFR_06500 PF04234 CopC domain AFR_06500 PF05425 AFR_06500 AFR_06510 PF00929 Exonuclease AFR_06515 PF14659 Phage integrase, N-terminal SAM-like domain AFR_06525 PF09250 Bifunctional DNA primase/polymerase, N-terminal AFR_06535 PF00145 C-5 cytosine-specific DNA methylase AFR_06565 PF00293 NUDIX domain AFR_06575 PF11750 AFR_06575 AFR_06595 PF00293 NUDIX domain AFR_06595 PF00392 Bacterial regulatory proteins, gntR family AFR_06615 PF03707 AFR_06615 AFR_06620 PF00486 Transcriptional regulatory protein, C terminal AFR_06620 PF03704 Bacterial transcriptional activator domain AFR_06620 PF13191 AAA ATPase domain AFR_06625 PF00561 alpha/beta hydrolase fold AFR_06630 PF01734 Patatin-like phospholipase AFR_06635 PF01266 FAD dependent oxidoreductase AFR_06640 PF00528 Binding-protein-dependent transport system inner membrane component AFR_06645 PF00528 Binding-protein-dependent transport system inner membrane component AFR_06650 PF13343 Bacterial extracellular solute-binding protein AFR_06655 PF00005 ABC transporter AFR_06655 PF08402 TOBE domain AFR_06660 PF00171 Aldehyde dehydrogenase family AFR_06670 PF07728 AAA domain (dynein-related subfamily) AFR_06675 PF09967 AFR_06675 AFR_06675 PF13203 AFR_06675 AFR_06685 PF10282 Lactonase, 7-bladed beta-propeller AFR_06690 PF04542 Sigma-70 region 2 AFR_06690 PF08281 Sigma-70, region 4 AFR_06710 PF00072 Response regulator receiver domain AFR_06710 PF00196 Bacterial regulatory proteins, luxR family AFR_06715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_06715 PF07730 Histidine kinase AFR_06725 PF00005 ABC transporter AFR_06730 PF00005 ABC transporter AFR_06740 PF13411 MerR HTH family regulatory protein AFR_06745 PF00082 Subtilase family AFR_06750 PF03734 L,D-transpeptidase catalytic domain AFR_06755 PF03734 L,D-transpeptidase catalytic domain AFR_06765 PF03473 MOSC domain AFR_06765 PF03476 MOSC N-terminal beta barrel domain AFR_06770 PF00486 Transcriptional regulatory protein, C terminal AFR_06770 PF00931 NB-ARC domain AFR_06770 PF03704 Bacterial transcriptional activator domain AFR_06770 PF13181 Tetratricopeptide repeat AFR_06770 PF13424 Tetratricopeptide repeat AFR_06775 PF05239 PRC-barrel domain AFR_06780 PF00072 Response regulator receiver domain AFR_06785 PF00482 Type II secretion system (T2SS), protein F AFR_06790 PF00482 Type II secretion system (T2SS), protein F AFR_06795 PF00437 Type II/IV secretion system protein AFR_06800 PF10609 ParA/MinD ATPase like AFR_06805 PF16976 AFR_06805 AFR_06810 PF13400 AFR_06810 AFR_06820 PF04964 AFR_06820 AFR_06825 PF11042 AFR_06825 AFR_06830 PF09391 Protein of unknown function (DUF2000) AFR_06835 PF01037 AsnC family AFR_06835 PF13404 AsnC-type helix-turn-helix domain AFR_06840 PF09997 AFR_06840 AFR_06845 PF00583 Acetyltransferase (GNAT) family AFR_06865 PF04229 GrpB protein AFR_06870 PF01544 CorA-like Mg2+ transporter protein AFR_06875 PF01061 AFR_06875 AFR_06880 PF00005 ABC transporter AFR_06880 PF13732 AFR_06880 AFR_06885 PF08279 HTH domain AFR_06885 PF13280 AFR_06885 AFR_06890 PF01979 Amidohydrolase family AFR_06895 PF08719 Domain of unknown function (DUF1768) AFR_06905 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_06905 PF12840 Helix-turn-helix domain AFR_06910 PF00296 Luciferase-like monooxygenase AFR_06915 PF00293 NUDIX domain AFR_06920 PF00583 Acetyltransferase (GNAT) family AFR_06925 PF00728 Glycosyl hydrolase family 20, catalytic domain AFR_06925 PF02838 Glycosyl hydrolase family 20, domain 2 AFR_06935 PF01435 Peptidase family M48 AFR_06945 PF04075 Domain of unknown function (DUF385) AFR_06950 PF08279 HTH domain AFR_06950 PF13280 AFR_06950 AFR_06965 PF00672 HAMP domain AFR_06965 PF08376 Nitrate and nitrite sensing AFR_06970 PF03259 Roadblock/LC7 domain AFR_06975 PF05331 AFR_06975 AFR_06980 PF03029 Conserved hypothetical ATP binding protein AFR_06985 PF00486 Transcriptional regulatory protein, C terminal AFR_06985 PF03704 Bacterial transcriptional activator domain AFR_06985 PF12836 Helix-hairpin-helix motif AFR_06995 PF10282 Lactonase, 7-bladed beta-propeller AFR_07000 PF00092 von Willebrand factor type A domain AFR_07000 PF13531 Bacterial extracellular solute-binding protein AFR_07005 PF07228 Stage II sporulation protein E (SpoIIE) AFR_07010 PF01047 MarR family AFR_07015 PF00480 ROK family AFR_07020 PF01261 Xylose isomerase-like TIM barrel AFR_07025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_07025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_07030 PF07690 Major Facilitator Superfamily AFR_07035 PF00128 Alpha amylase, catalytic domain AFR_07040 PF13328 HD domain AFR_07045 PF03707 AFR_07045 AFR_07055 PF00149 Calcineurin-like phosphoesterase AFR_07065 PF14907 Uncharacterised nucleotidyltransferase AFR_07070 PF02223 Thymidylate kinase AFR_07075 PF00106 short chain dehydrogenase AFR_07080 PF00140 Sigma-70 factor, region 1 AFR_07080 PF04539 Sigma-70 region 3 AFR_07080 PF04542 Sigma-70 region 2 AFR_07080 PF04545 Sigma-70, region 4 AFR_07085 PF00877 NlpC/P60 family AFR_07090 PF12823 AFR_07090 AFR_07105 PF07098 AFR_07105 AFR_07125 PF03861 ANTAR domain AFR_07130 PF03992 Antibiotic biosynthesis monooxygenase AFR_07135 PF07690 Major Facilitator Superfamily AFR_07140 PF01047 MarR family AFR_07145 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AFR_07150 PF00486 Transcriptional regulatory protein, C terminal AFR_07150 PF03704 Bacterial transcriptional activator domain AFR_07155 PF00072 Response regulator receiver domain AFR_07155 PF00196 Bacterial regulatory proteins, luxR family AFR_07165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_07165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_07170 PF01636 Phosphotransferase enzyme family AFR_07175 PF00005 ABC transporter AFR_07180 PF01061 AFR_07180 AFR_07185 PF01047 MarR family AFR_07190 PF01494 FAD binding domain AFR_07200 PF10014 2OG-Fe dioxygenase AFR_07205 PF00512 His Kinase A (phospho-acceptor) domain AFR_07205 PF00672 HAMP domain AFR_07205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_07210 PF00072 Response regulator receiver domain AFR_07210 PF00486 Transcriptional regulatory protein, C terminal AFR_07220 PF01471 Putative peptidoglycan binding domain AFR_07220 PF13437 HlyD family secretion protein AFR_07225 PF00005 ABC transporter AFR_07230 PF02687 AFR_07230 AFR_07230 PF12704 MacB-like periplasmic core domain AFR_07240 PF03795 YCII-related domain AFR_07250 PF04542 Sigma-70 region 2 AFR_07250 PF08281 Sigma-70, region 4 AFR_07255 PF02627 Carboxymuconolactone decarboxylase family AFR_07275 PF12146 Putative lysophospholipase AFR_07280 PF00436 Single-strand binding protein family AFR_07285 PF03186 AFR_07285 AFR_07290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFR_07290 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFR_07295 PF00485 Phosphoribulokinase / Uridine kinase family AFR_07300 PF01435 Peptidase family M48 AFR_07305 PF01546 Peptidase family M20/M25/M40 AFR_07305 PF07687 Peptidase dimerisation domain AFR_07310 PF01494 FAD binding domain AFR_07315 PF08282 haloacid dehalogenase-like hydrolase AFR_07325 PF01068 ATP dependent DNA ligase domain AFR_07325 PF04675 DNA ligase N terminus AFR_07325 PF04679 ATP dependent DNA ligase C terminal region AFR_07335 PF02104 AFR_07335 AFR_07340 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFR_07340 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFR_07345 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_07350 PF00905 Penicillin binding protein transpeptidase domain AFR_07350 PF00912 Transglycosylase AFR_07360 PF00155 Aminotransferase class I and II AFR_07365 PF02277 Phosphoribosyltransferase AFR_07370 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_07370 PF13241 Putative NAD(P)-binding AFR_07380 PF00982 Glycosyltransferase family 20 AFR_07390 PF00005 ABC transporter AFR_07390 PF12848 ABC transporter AFR_07395 PF13279 Thioesterase-like superfamily AFR_07405 PF10722 Putative bacterial sensory transduction regulator AFR_07410 PF17164 AFR_07410 AFR_07415 PF01152 Bacterial-like globin AFR_07420 PF07690 Major Facilitator Superfamily AFR_07425 PF00924 Mechanosensitive ion channel AFR_07430 PF14279 AFR_07430 AFR_07440 PF04203 Sortase family AFR_07455 PF17174 AFR_07455 AFR_07460 PF05685 Putative restriction endonuclease AFR_07465 PF01433 Peptidase family M1 AFR_07465 PF11838 ERAP1-like C-terminal domain AFR_07480 PF06245 AFR_07480 AFR_07485 PF07859 alpha/beta hydrolase fold AFR_07490 PF02502 Ribose/Galactose Isomerase AFR_07500 PF13527 Acetyltransferase (GNAT) domain AFR_07500 PF13530 Sterol carrier protein domain AFR_07510 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_07515 PF00188 Cysteine-rich secretory protein family AFR_07520 PF06305 AFR_07520 AFR_07530 PF12833 Helix-turn-helix domain AFR_07535 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFR_07535 PF05697 Bacterial trigger factor protein (TF) AFR_07535 PF05698 Bacterial trigger factor protein (TF) C-terminus AFR_07540 PF00574 Clp protease AFR_07545 PF00574 Clp protease AFR_07550 PF06689 ClpX C4-type zinc finger AFR_07550 PF07724 AAA domain (Cdc48 subfamily) AFR_07550 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_07555 PF08445 FR47-like protein AFR_07560 PF00795 Carbon-nitrogen hydrolase AFR_07580 PF00133 tRNA synthetases class I (I, L, M and V) AFR_07580 PF08264 Anticodon-binding domain of tRNA AFR_07580 PF10458 Valyl tRNA synthetase tRNA binding arm AFR_07585 PF02875 Mur ligase family, glutamate ligase domain AFR_07585 PF08245 Mur ligase middle domain AFR_07590 PF14017 AFR_07590 AFR_07595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_07610 PF00334 Nucleoside diphosphate kinase AFR_07615 PF02627 Carboxymuconolactone decarboxylase family AFR_07620 PF09423 PhoD-like phosphatase AFR_07620 PF16655 AFR_07620 AFR_07625 PF00133 tRNA synthetases class I (I, L, M and V) AFR_07625 PF08264 Anticodon-binding domain of tRNA AFR_07630 PF01553 Acyltransferase AFR_07635 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AFR_07645 PF12697 Alpha/beta hydrolase family AFR_07650 PF07228 Stage II sporulation protein E (SpoIIE) AFR_07650 PF13185 GAF domain AFR_07650 PF13426 PAS domain AFR_07650 PF13581 Histidine kinase-like ATPase domain AFR_07655 PF01740 STAS domain AFR_07660 PF04055 Radical SAM superfamily AFR_07665 PF10105 AFR_07665 AFR_07670 PF10150 Ribonuclease E/G family AFR_07680 PF00829 Ribosomal prokaryotic L21 protein AFR_07685 PF01016 Ribosomal L27 protein AFR_07690 PF01018 GTP1/OBG AFR_07690 PF01926 50S ribosome-binding GTPase AFR_07690 PF09269 Domain of unknown function (DUF1967) AFR_07695 PF00583 Acetyltransferase (GNAT) family AFR_07710 PF01433 Peptidase family M1 AFR_07710 PF11838 ERAP1-like C-terminal domain AFR_07715 PF00072 Response regulator receiver domain AFR_07715 PF00989 PAS fold AFR_07715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_07720 PF01467 Cytidylyltransferase AFR_07725 PF02410 Oligomerisation domain AFR_07730 PF00300 Histidine phosphatase superfamily (branch 1) AFR_07740 PF02645 Uncharacterised protein, DegV family COG1307 AFR_07750 PF05175 Methyltransferase small domain AFR_07755 PF10531 SLBB domain AFR_07755 PF12836 Helix-hairpin-helix motif AFR_07760 PF00753 Metallo-beta-lactamase superfamily AFR_07760 PF03772 AFR_07760 AFR_07765 PF13460 NADH(P)-binding AFR_07770 PF07971 Glycosyl hydrolase family 92 AFR_07775 PF06144 DNA polymerase III, delta subunit AFR_07785 PF01649 Ribosomal protein S20 AFR_07790 PF01636 Phosphotransferase enzyme family AFR_07795 PF14024 AFR_07795 AFR_07805 PF00009 Elongation factor Tu GTP binding domain AFR_07805 PF00679 Elongation factor G C-terminus AFR_07805 PF06421 GTP-binding protein LepA C-terminus AFR_07815 PF00989 PAS fold AFR_07825 PF00378 Enoyl-CoA hydratase/isomerase family AFR_07830 PF04055 Radical SAM superfamily AFR_07835 PF09685 AFR_07835 AFR_07840 PF01628 HrcA protein C terminal domain AFR_07840 PF08220 DeoR-like helix-turn-helix domain AFR_07845 PF00226 DnaJ domain AFR_07845 PF00684 DnaJ central domain AFR_07845 PF01556 DnaJ C terminal domain AFR_07850 PF04452 RNA methyltransferase AFR_07855 PF01032 FecCD transport family AFR_07860 PF01032 FecCD transport family AFR_07865 PF00005 ABC transporter AFR_07870 PF03621 MbtH-like protein AFR_07875 PF00005 ABC transporter AFR_07875 PF00664 ABC transporter transmembrane region AFR_07880 PF00005 ABC transporter AFR_07880 PF00664 ABC transporter transmembrane region AFR_07890 PF01497 Periplasmic binding protein AFR_07895 PF02261 Aspartate decarboxylase AFR_07905 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_07910 PF00551 Formyl transferase AFR_07910 PF02911 Formyl transferase, C-terminal domain AFR_07915 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AFR_07925 PF00583 Acetyltransferase (GNAT) family AFR_07935 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_07935 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_07935 PF14310 Fibronectin type III-like domain AFR_07940 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_07945 PF01230 HIT domain AFR_07950 PF00144 Beta-lactamase AFR_07955 PF02562 PhoH-like protein AFR_07960 PF02130 Uncharacterized protein family UPF0054 AFR_07965 PF00571 CBS domain AFR_07965 PF01595 AFR_07965 AFR_07965 PF03471 Transporter associated domain AFR_07975 PF01926 50S ribosome-binding GTPase AFR_07975 PF07650 KH domain AFR_07980 PF01757 AFR_07980 AFR_07985 PF07690 Major Facilitator Superfamily AFR_07990 PF13349 AFR_07990 AFR_07995 PF02565 Recombination protein O C terminal AFR_07995 PF11967 Recombination protein O N terminal AFR_08000 PF01255 Putative undecaprenyl diphosphate synthase AFR_08005 PF00300 Histidine phosphatase superfamily (branch 1) AFR_08010 PF12710 haloacid dehalogenase-like hydrolase AFR_08015 PF01910 Domain of unknown function DUF77 AFR_08035 PF06271 AFR_08035 AFR_08040 PF02361 Cobalt transport protein AFR_08045 PF00005 ABC transporter AFR_08050 PF09819 AFR_08050 AFR_08055 PF00561 alpha/beta hydrolase fold AFR_08070 PF01475 Ferric uptake regulator family AFR_08075 PF01022 Bacterial regulatory protein, arsR family AFR_08080 PF00950 AFR_08080 AFR_08085 PF00005 ABC transporter AFR_08090 PF01297 Periplasmic solute binding protein family AFR_08100 PF03992 Antibiotic biosynthesis monooxygenase AFR_08110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_08110 PF03129 Anticodon binding domain AFR_08115 PF13478 XdhC Rossmann domain AFR_08120 PF01207 Dihydrouridine synthase (Dus) AFR_08125 PF07978 NIPSNAP AFR_08135 PF03259 Roadblock/LC7 domain AFR_08150 PF14332 AFR_08150 AFR_08160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_08160 PF00672 HAMP domain AFR_08165 PF01966 HD domain AFR_08165 PF13286 Phosphohydrolase-associated domain AFR_08170 PF01807 CHC2 zinc finger AFR_08170 PF08275 DNA primase catalytic core, N-terminal domain AFR_08170 PF08278 DNA primase DnaG DnaB-binding AFR_08170 PF10410 DnaB-helicase binding domain of primase AFR_08170 PF13662 Toprim domain AFR_08180 PF00005 ABC transporter AFR_08185 PF01061 AFR_08185 AFR_08190 PF01061 AFR_08190 AFR_08195 PF03631 AFR_08195 AFR_08200 PF00480 ROK family AFR_08200 PF13412 Winged helix-turn-helix DNA-binding AFR_08205 PF00005 ABC transporter AFR_08210 PF02653 AFR_08210 AFR_08215 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFR_08215 PF13407 Periplasmic binding protein domain AFR_08220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_08220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_08225 PF01261 Xylose isomerase-like TIM barrel AFR_08230 PF01261 Xylose isomerase-like TIM barrel AFR_08230 PF07582 AP endonuclease family 2 C terminus AFR_08240 PF01593 Flavin containing amine oxidoreductase AFR_08255 PF13419 Haloacid dehalogenase-like hydrolase AFR_08260 PF00155 Aminotransferase class I and II AFR_08265 PF00815 Histidinol dehydrogenase AFR_08285 PF00400 WD domain, G-beta repeat AFR_08285 PF13191 AAA ATPase domain AFR_08310 PF07690 Major Facilitator Superfamily AFR_08315 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFR_08320 PF13420 Acetyltransferase (GNAT) domain AFR_08325 PF01022 Bacterial regulatory protein, arsR family AFR_08330 PF00230 Major intrinsic protein AFR_08335 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFR_08345 PF12770 AFR_08345 AFR_08345 PF13424 Tetratricopeptide repeat AFR_08350 PF04542 Sigma-70 region 2 AFR_08360 PF00082 Subtilase family AFR_08370 PF00353 Hemolysin-type calcium-binding repeat (2 copies) AFR_08380 PF01872 RibD C-terminal domain AFR_08385 PF12697 Alpha/beta hydrolase family AFR_08390 PF12833 Helix-turn-helix domain AFR_08395 PF01935 Domain of unknown function DUF87 AFR_08405 PF04480 Protein of unknown function (DUF559) AFR_08410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_08415 PF00440 Bacterial regulatory proteins, tetR family AFR_08415 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_08420 PF14329 AFR_08420 AFR_08425 PF12867 DinB superfamily AFR_08445 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_08445 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_08450 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AFR_08455 PF00171 Aldehyde dehydrogenase family AFR_08460 PF00588 SpoU rRNA Methylase family AFR_08465 PF01636 Phosphotransferase enzyme family AFR_08475 PF00196 Bacterial regulatory proteins, luxR family AFR_08475 PF13191 AAA ATPase domain AFR_08480 PF13649 Methyltransferase domain AFR_08485 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_08495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_08495 PF00672 HAMP domain AFR_08495 PF07238 PilZ domain AFR_08505 PF02733 Dak1 domain AFR_08505 PF02734 DAK2 domain AFR_08510 PF00750 tRNA synthetases class I (R) AFR_08510 PF03485 Arginyl tRNA synthetase N terminal domain AFR_08510 PF05746 DALR anticodon binding domain AFR_08515 PF06271 AFR_08515 AFR_08520 PF01944 AFR_08520 AFR_08525 PF00881 Nitroreductase family AFR_08530 PF01882 AFR_08530 AFR_08535 PF07726 ATPase family associated with various cellular activities (AAA) AFR_08545 PF13559 AFR_08545 AFR_08555 PF00149 Calcineurin-like phosphoesterase AFR_08555 PF02872 5'-nucleotidase, C-terminal domain AFR_08565 PF00717 Peptidase S24-like AFR_08565 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_08570 PF06445 GyrI-like small molecule binding domain AFR_08570 PF13411 MerR HTH family regulatory protein AFR_08575 PF00069 Protein kinase domain AFR_08585 PF01740 STAS domain AFR_08590 PF00069 Protein kinase domain AFR_08595 PF01975 Survival protein SurE AFR_08600 PF00294 pfkB family carbohydrate kinase AFR_08605 PF01494 FAD binding domain AFR_08610 PF00440 Bacterial regulatory proteins, tetR family AFR_08610 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_08615 PF00107 Zinc-binding dehydrogenase AFR_08615 PF08240 Alcohol dehydrogenase GroES-like domain AFR_08620 PF00440 Bacterial regulatory proteins, tetR family AFR_08620 PF16925 AFR_08620 AFR_08625 PF00891 O-methyltransferase AFR_08625 PF16864 AFR_08625 AFR_08635 PF01545 Cation efflux family AFR_08645 PF13245 Part of AAA domain AFR_08645 PF13538 UvrD-like helicase C-terminal domain AFR_08650 PF12697 Alpha/beta hydrolase family AFR_08655 PF00484 Carbonic anhydrase AFR_08665 PF11343 AFR_08665 AFR_08670 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_08675 PF12833 Helix-turn-helix domain AFR_08675 PF12852 Cupin AFR_08680 PF13602 Zinc-binding dehydrogenase AFR_08685 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_08685 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_08690 PF00550 Phosphopantetheine attachment site AFR_08695 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFR_08695 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFR_08700 PF00698 Acyl transferase domain AFR_08705 PF13556 PucR C-terminal helix-turn-helix domain AFR_08715 PF00440 Bacterial regulatory proteins, tetR family AFR_08715 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_08735 PF00749 tRNA synthetases class I (E and Q), catalytic domain AFR_08740 PF00652 Ricin-type beta-trefoil lectin domain AFR_08740 PF00704 Glycosyl hydrolases family 18 AFR_08745 PF07690 Major Facilitator Superfamily AFR_08750 PF06224 AFR_08750 AFR_08755 PF07336 Protein of unknown function (DUF1470) AFR_08755 PF11706 CGNR zinc finger AFR_08760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_08760 PF00672 HAMP domain AFR_08760 PF17201 AFR_08760 AFR_08765 PF00456 Transketolase, thiamine diphosphate binding domain AFR_08770 PF01894 Uncharacterised protein family UPF0047 AFR_08775 PF12679 AFR_08775 AFR_08780 PF00005 ABC transporter AFR_08785 PF12802 MarR family AFR_08790 PF00676 Dehydrogenase E1 component AFR_08790 PF02779 Transketolase, pyrimidine binding domain AFR_08790 PF02780 Transketolase, C-terminal domain AFR_08795 PF11253 AFR_08795 AFR_08800 PF00578 AhpC/TSA family AFR_08805 PF08241 Methyltransferase domain AFR_08810 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_08815 PF01337 Barstar (barnase inhibitor) AFR_08820 PF04167 Protein of unknown function (DUF402) AFR_08825 PF08241 Methyltransferase domain AFR_08835 PF00293 NUDIX domain AFR_08840 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_08855 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_08860 PF01381 Helix-turn-helix AFR_08860 PF07883 Cupin domain AFR_08865 PF13649 Methyltransferase domain AFR_08870 PF00583 Acetyltransferase (GNAT) family AFR_08875 PF09250 Bifunctional DNA primase/polymerase, N-terminal AFR_08880 PF13560 Helix-turn-helix domain AFR_08885 PF02441 Flavoprotein AFR_08890 PF01784 NIF3 (NGG1p interacting factor 3) AFR_08895 PF02591 Putative zinc ribbon domain AFR_08900 PF00300 Histidine phosphatase superfamily (branch 1) AFR_08900 PF13456 Reverse transcriptase-like AFR_08905 PF00704 Glycosyl hydrolases family 18 AFR_08910 PF11755 AFR_08910 AFR_08915 PF00474 Sodium:solute symporter family AFR_08920 PF01047 MarR family AFR_08925 PF01925 AFR_08925 AFR_08940 PF06803 AFR_08940 AFR_08955 PF00072 Response regulator receiver domain AFR_08960 PF00512 His Kinase A (phospho-acceptor) domain AFR_08960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_08965 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_08965 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFR_08970 PF00291 Pyridoxal-phosphate dependent enzyme AFR_08980 PF07690 Major Facilitator Superfamily AFR_08985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_08985 PF03466 LysR substrate binding domain AFR_08995 PF00925 GTP cyclohydrolase II AFR_09000 PF02557 D-alanyl-D-alanine carboxypeptidase AFR_09005 PF13847 Methyltransferase domain AFR_09010 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFR_09010 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFR_09015 PF13599 Pentapeptide repeats (9 copies) AFR_09025 PF00773 RNB domain AFR_09030 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_09035 PF02548 Ketopantoate hydroxymethyltransferase AFR_09040 PF00795 Carbon-nitrogen hydrolase AFR_09040 PF02540 NAD synthase AFR_09045 PF00120 Glutamine synthetase, catalytic domain AFR_09045 PF03951 Glutamine synthetase, beta-Grasp domain AFR_09050 PF03994 AFR_09050 AFR_09055 PF06772 AFR_09055 AFR_09060 PF00583 Acetyltransferase (GNAT) family AFR_09065 PF00117 Glutamine amidotransferase class-I AFR_09070 PF03710 Glutamate-ammonia ligase adenylyltransferase AFR_09070 PF08335 GlnD PII-uridylyltransferase AFR_09075 PF13231 AFR_09075 AFR_09090 PF09594 AFR_09090 AFR_09095 PF13449 Esterase-like activity of phytase AFR_09100 PF00486 Transcriptional regulatory protein, C terminal AFR_09100 PF03704 Bacterial transcriptional activator domain AFR_09105 PF00805 Pentapeptide repeats (8 copies) AFR_09110 PF06271 AFR_09110 AFR_09115 PF00120 Glutamine synthetase, catalytic domain AFR_09115 PF03951 Glutamine synthetase, beta-Grasp domain AFR_09120 PF00589 Phage integrase family AFR_09125 PF12728 Helix-turn-helix domain AFR_09140 PF10824 Protein of unknown function (DUF2580) AFR_09155 PF13424 Tetratricopeptide repeat AFR_09155 PF13676 TIR domain AFR_09160 PF03235 AFR_09160 AFR_09165 PF03091 CutA1 divalent ion tolerance protein AFR_09175 PF14206 AFR_09175 AFR_09190 PF13829 AFR_09190 AFR_09195 PF06197 AFR_09195 AFR_09200 PF03795 YCII-related domain AFR_09205 PF02899 Phage integrase, N-terminal SAM-like domain AFR_09205 PF04542 Sigma-70 region 2 AFR_09205 PF08281 Sigma-70, region 4 AFR_09215 PF00440 Bacterial regulatory proteins, tetR family AFR_09215 PF13305 WHG domain AFR_09220 PF08592 AFR_09220 AFR_09225 PF04055 Radical SAM superfamily AFR_09230 PF00152 tRNA synthetases class II (D, K and N) AFR_09230 PF01336 OB-fold nucleic acid binding domain AFR_09240 PF03099 Biotin/lipoate A/B protein ligase family AFR_09250 PF01370 NAD dependent epimerase/dehydratase family AFR_09250 PF08338 Domain of unknown function (DUF1731) AFR_09255 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFR_09255 PF00364 Biotin-requiring enzyme AFR_09255 PF02817 e3 binding domain AFR_09260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_09260 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_09270 PF00883 Cytosol aminopeptidase family, catalytic domain AFR_09270 PF02789 Cytosol aminopeptidase family, N-terminal domain AFR_09275 PF01571 Aminomethyltransferase folate-binding domain AFR_09275 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFR_09280 PF02654 AFR_09280 AFR_09285 PF02277 Phosphoribosyltransferase AFR_09285 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AFR_09300 PF00248 Aldo/keto reductase family AFR_09305 PF14903 AFR_09305 AFR_09310 PF06182 AFR_09310 AFR_09315 PF06182 AFR_09315 AFR_09320 PF00005 ABC transporter AFR_09325 PF01381 Helix-turn-helix AFR_09325 PF07883 Cupin domain AFR_09330 PF03591 AFR_09330 AFR_09335 PF05437 AFR_09335 AFR_09340 PF11241 AFR_09340 AFR_09345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFR_09350 PF02445 Quinolinate synthetase A protein AFR_09360 PF02595 Glycerate kinase family AFR_09365 PF01521 Iron-sulphur cluster biosynthesis AFR_09370 PF00294 pfkB family carbohydrate kinase AFR_09375 PF13671 AAA domain AFR_09380 PF01206 Sulfurtransferase TusA AFR_09385 PF00266 Aminotransferase class-V AFR_09390 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AFR_09390 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AFR_09395 PF12270 AFR_09395 AFR_09405 PF00591 Glycosyl transferase family, a/b domain AFR_09405 PF02885 Glycosyl transferase family, helical bundle domain AFR_09415 PF09678 AFR_09415 AFR_09420 PF00510 Cytochrome c oxidase subunit III AFR_09425 PF00034 Cytochrome c AFR_09425 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AFR_09430 PF00355 Rieske [2Fe-2S] domain AFR_09435 PF13631 Cytochrome b(N-terminal)/b6/petB AFR_09440 PF01037 AsnC family AFR_09445 PF03551 Transcriptional regulator PadR-like family AFR_09445 PF10400 Virulence activator alpha C-term AFR_09455 PF12804 MobA-like NTP transferase domain AFR_09460 PF00293 NUDIX domain AFR_09465 PF02824 TGS domain AFR_09465 PF04607 Region found in RelA / SpoT proteins AFR_09465 PF13328 HD domain AFR_09470 PF00929 Exonuclease AFR_09475 PF05991 AFR_09475 AFR_09485 PF01435 Peptidase family M48 AFR_09485 PF16491 AFR_09485 AFR_09490 PF00534 Glycosyl transferases group 1 AFR_09495 PF00005 ABC transporter AFR_09500 PF00085 Thioredoxin AFR_09505 PF04542 Sigma-70 region 2 AFR_09505 PF08281 Sigma-70, region 4 AFR_09515 PF00005 ABC transporter AFR_09530 PF14340 AFR_09530 AFR_09535 PF00072 Response regulator receiver domain AFR_09535 PF00196 Bacterial regulatory proteins, luxR family AFR_09540 PF07730 Histidine kinase AFR_09545 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_09555 PF00480 ROK family AFR_09560 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_09565 PF00743 Flavin-binding monooxygenase-like AFR_09570 PF12697 Alpha/beta hydrolase family AFR_09575 PF00982 Glycosyltransferase family 20 AFR_09585 PF01553 Acyltransferase AFR_09590 PF00027 Cyclic nucleotide-binding domain AFR_09590 PF13545 Crp-like helix-turn-helix domain AFR_09595 PF01636 Phosphotransferase enzyme family AFR_09600 PF16473 AFR_09600 AFR_09605 PF13396 AFR_09605 AFR_09610 PF01370 NAD dependent epimerase/dehydratase family AFR_09615 PF00440 Bacterial regulatory proteins, tetR family AFR_09620 PF16242 AFR_09620 AFR_09625 PF00365 Phosphofructokinase AFR_09630 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_09630 PF14748 Pyrroline-5-carboxylate reductase dimerisation AFR_09635 PF04250 AFR_09635 AFR_09640 PF00255 Glutathione peroxidase AFR_09645 PF00704 Glycosyl hydrolases family 18 AFR_09650 PF01474 Class-II DAHP synthetase family AFR_09655 PF01212 Beta-eliminating lyase AFR_09660 PF00440 Bacterial regulatory proteins, tetR family AFR_09665 PF08240 Alcohol dehydrogenase GroES-like domain AFR_09665 PF13602 Zinc-binding dehydrogenase AFR_09670 PF11528 Protein of unknown function (DUF3224) AFR_09675 PF13560 Helix-turn-helix domain AFR_09680 PF00296 Luciferase-like monooxygenase AFR_09685 PF01261 Xylose isomerase-like TIM barrel AFR_09690 PF00069 Protein kinase domain AFR_09690 PF03793 PASTA domain AFR_09720 PF00348 Polyprenyl synthetase AFR_09725 PF02219 Methylenetetrahydrofolate reductase AFR_09730 PF01066 CDP-alcohol phosphatidyltransferase AFR_09735 PF14279 AFR_09735 AFR_09740 PF00533 BRCA1 C Terminus (BRCT) domain AFR_09740 PF00929 Exonuclease AFR_09745 PF12802 MarR family AFR_09750 PF07690 Major Facilitator Superfamily AFR_09760 PF07690 Major Facilitator Superfamily AFR_09765 PF01494 FAD binding domain AFR_09770 PF00440 Bacterial regulatory proteins, tetR family AFR_09775 PF03596 AFR_09775 AFR_09785 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_09790 PF13085 2Fe-2S iron-sulfur cluster binding domain AFR_09790 PF13183 4Fe-4S dicluster domain AFR_09795 PF00890 FAD binding domain AFR_09795 PF02910 Fumarate reductase flavoprotein C-term AFR_09800 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AFR_09805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_09805 PF03466 LysR substrate binding domain AFR_09810 PF13091 PLD-like domain AFR_09815 PF13460 NADH(P)-binding AFR_09820 PF01047 MarR family AFR_09825 PF01593 Flavin containing amine oxidoreductase AFR_09830 PF00535 Glycosyl transferase family 2 AFR_09835 PF04240 AFR_09835 AFR_09840 PF00583 Acetyltransferase (GNAT) family AFR_09850 PF04073 Aminoacyl-tRNA editing domain AFR_09855 PF00175 Oxidoreductase NAD-binding domain AFR_09855 PF01794 AFR_09855 AFR_09860 PF00892 EamA-like transporter family AFR_09865 PF00106 short chain dehydrogenase AFR_09880 PF00817 impB/mucB/samB family AFR_09885 PF01336 OB-fold nucleic acid binding domain AFR_09885 PF02811 PHP domain AFR_09885 PF07733 Bacterial DNA polymerase III alpha subunit AFR_09885 PF14579 Helix-hairpin-helix motif AFR_09890 PF00720 Subtilisin inhibitor-like AFR_09895 PF00082 Subtilase family AFR_09900 PF13489 Methyltransferase domain AFR_09905 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AFR_09910 PF00817 impB/mucB/samB family AFR_09910 PF11798 IMS family HHH motif AFR_09910 PF11799 impB/mucB/samB family C-terminal domain AFR_09915 PF11239 AFR_09915 AFR_09920 PF01841 Transglutaminase-like superfamily AFR_09920 PF13559 AFR_09920 AFR_09925 PF01882 AFR_09925 AFR_09930 PF07726 ATPase family associated with various cellular activities (AAA) AFR_09935 PF08264 Anticodon-binding domain of tRNA AFR_09935 PF09334 tRNA synthetases class I (M) AFR_09935 PF13603 Leucyl-tRNA synthetase, Domain 2 AFR_09940 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFR_09955 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFR_09960 PF08245 Mur ligase middle domain AFR_09960 PF08353 AFR_09960 AFR_09965 PF00877 NlpC/P60 family AFR_09970 PF02381 MraZ protein AFR_09975 PF01795 MraW methylase family AFR_09985 PF00905 Penicillin binding protein transpeptidase domain AFR_09985 PF03717 Penicillin-binding Protein dimerisation domain AFR_09990 PF01225 Mur ligase family, catalytic domain AFR_09990 PF02875 Mur ligase family, glutamate ligase domain AFR_09990 PF08245 Mur ligase middle domain AFR_09995 PF01225 Mur ligase family, catalytic domain AFR_09995 PF02875 Mur ligase family, glutamate ligase domain AFR_09995 PF08245 Mur ligase middle domain AFR_10000 PF00953 Glycosyl transferase family 4 AFR_10000 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AFR_10005 PF01098 AFR_10005 AFR_10010 PF03033 Glycosyltransferase family 28 N-terminal domain AFR_10010 PF04101 Glycosyltransferase family 28 C-terminal domain AFR_10015 PF01225 Mur ligase family, catalytic domain AFR_10015 PF02875 Mur ligase family, glutamate ligase domain AFR_10015 PF08245 Mur ligase middle domain AFR_10020 PF03799 Cell division protein FtsQ AFR_10020 PF08478 POTRA domain, FtsQ-type AFR_10025 PF00091 Tubulin/FtsZ family, GTPase domain AFR_10025 PF12327 FtsZ family, C-terminal domain AFR_10030 PF01168 Alanine racemase, N-terminal domain AFR_10035 PF04472 Protein of unknown function (DUF552) AFR_10040 PF02325 AFR_10040 AFR_10045 PF05103 DivIVA protein AFR_10055 PF02594 Uncharacterised ACR, YggU family COG1872 AFR_10060 PF00999 Sodium/hydrogen exchanger family AFR_10060 PF02080 TrkA-C domain AFR_10065 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFR_10070 PF01252 AFR_10070 AFR_10075 PF00849 RNA pseudouridylate synthase AFR_10085 PF13614 AAA domain AFR_10090 PF02811 PHP domain AFR_10090 PF07733 Bacterial DNA polymerase III alpha subunit AFR_10090 PF14579 Helix-hairpin-helix motif AFR_10095 PF10821 AFR_10095 AFR_10100 PF02190 ATP-dependent protease La (LON) domain AFR_10105 PF00815 Histidinol dehydrogenase AFR_10110 PF00155 Aminotransferase class I and II AFR_10115 PF00475 Imidazoleglycerol-phosphate dehydratase AFR_10125 PF00117 Glutamine amidotransferase class-I AFR_10135 PF00977 Histidine biosynthesis protein AFR_10140 PF01042 Endoribonuclease L-PSP AFR_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_10145 PF03466 LysR substrate binding domain AFR_10150 PF00892 EamA-like transporter family AFR_10155 PF00977 Histidine biosynthesis protein AFR_10170 PF00155 Aminotransferase class I and II AFR_10170 PF00392 Bacterial regulatory proteins, gntR family AFR_10175 PF01522 Polysaccharide deacetylase AFR_10180 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_10190 PF04542 Sigma-70 region 2 AFR_10190 PF08281 Sigma-70, region 4 AFR_10195 PF00501 AMP-binding enzyme AFR_10200 PF00082 Subtilase family AFR_10200 PF05922 Peptidase inhibitor I9 AFR_10205 PF03413 Peptidase propeptide and YPEB domain AFR_10210 PF13649 Methyltransferase domain AFR_10215 PF00512 His Kinase A (phospho-acceptor) domain AFR_10215 PF00672 HAMP domain AFR_10215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_10220 PF00072 Response regulator receiver domain AFR_10220 PF00486 Transcriptional regulatory protein, C terminal AFR_10230 PF00155 Aminotransferase class I and II AFR_10230 PF00392 Bacterial regulatory proteins, gntR family AFR_10235 PF13520 Amino acid permease AFR_10245 PF00005 ABC transporter AFR_10245 PF00664 ABC transporter transmembrane region AFR_10250 PF00005 ABC transporter AFR_10250 PF00664 ABC transporter transmembrane region AFR_10255 PF00163 Ribosomal protein S4/S9 N-terminal domain AFR_10255 PF01479 S4 domain AFR_10260 PF10615 Protein of unknown function (DUF2470) AFR_10265 PF00440 Bacterial regulatory proteins, tetR family AFR_10270 PF01061 AFR_10270 AFR_10275 PF00005 ABC transporter AFR_10285 PF01502 Phosphoribosyl-AMP cyclohydrolase AFR_10290 PF00425 chorismate binding enzyme AFR_10290 PF04715 Anthranilate synthase component I, N terminal region AFR_10295 PF09534 AFR_10295 AFR_10305 PF00218 Indole-3-glycerol phosphate synthase AFR_10310 PF00291 Pyridoxal-phosphate dependent enzyme AFR_10315 PF00290 Tryptophan synthase alpha chain AFR_10320 PF01790 AFR_10320 AFR_10325 PF01494 FAD binding domain AFR_10325 PF13450 NAD(P)-binding Rossmann-like domain AFR_10330 PF08445 FR47-like protein AFR_10335 PF00310 Glutamine amidotransferases class-II AFR_10335 PF01493 GXGXG motif AFR_10335 PF01645 Conserved region in glutamate synthase AFR_10335 PF04898 Glutamate synthase central domain AFR_10340 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_10340 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AFR_10355 PF13519 von Willebrand factor type A domain AFR_10355 PF13531 Bacterial extracellular solute-binding protein AFR_10360 PF00656 Caspase domain AFR_10365 PF00224 Pyruvate kinase, barrel domain AFR_10365 PF02887 Pyruvate kinase, alpha/beta domain AFR_10370 PF13622 Thioesterase-like superfamily AFR_10385 PF00072 Response regulator receiver domain AFR_10385 PF03861 ANTAR domain AFR_10390 PF13458 Periplasmic binding protein AFR_10395 PF02653 AFR_10395 AFR_10400 PF02653 AFR_10400 AFR_10405 PF00005 ABC transporter AFR_10405 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFR_10410 PF00005 ABC transporter AFR_10415 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_10420 PF00528 Binding-protein-dependent transport system inner membrane component AFR_10425 PF00005 ABC transporter AFR_10430 PF00476 DNA polymerase family A AFR_10430 PF01367 5'-3' exonuclease, C-terminal SAM fold AFR_10430 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFR_10435 PF01022 Bacterial regulatory protein, arsR family AFR_10440 PF11338 AFR_10440 AFR_10445 PF11160 AFR_10445 AFR_10450 PF08241 Methyltransferase domain AFR_10455 PF00575 S1 RNA binding domain AFR_10460 PF01121 Dephospho-CoA kinase AFR_10460 PF04229 GrpB protein AFR_10465 PF00271 Helicase conserved C-terminal domain AFR_10465 PF02151 UvrB/uvrC motif AFR_10465 PF04851 Type III restriction enzyme, res subunit AFR_10465 PF12344 Ultra-violet resistance protein B AFR_10470 PF07366 SnoaL-like polyketide cyclase AFR_10475 PF00583 Acetyltransferase (GNAT) family AFR_10480 PF03992 Antibiotic biosynthesis monooxygenase AFR_10485 PF03741 AFR_10485 AFR_10490 PF00009 Elongation factor Tu GTP binding domain AFR_10490 PF00679 Elongation factor G C-terminus AFR_10490 PF03144 Elongation factor Tu domain 2 AFR_10495 PF01464 Transglycosylase SLT domain AFR_10500 PF00298 Ribosomal protein L11, RNA binding domain AFR_10500 PF03946 Ribosomal protein L11, N-terminal domain AFR_10505 PF00574 Clp protease AFR_10510 PF00857 Isochorismatase family AFR_10515 PF00753 Metallo-beta-lactamase superfamily AFR_10520 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_10525 PF03193 Protein of unknown function, DUF258 AFR_10535 PF00005 ABC transporter AFR_10540 PF00355 Rieske [2Fe-2S] domain AFR_10545 PF01541 GIY-YIG catalytic domain AFR_10545 PF02151 UvrB/uvrC motif AFR_10545 PF08459 UvrC Helix-hairpin-helix N-terminal AFR_10545 PF14520 Helix-hairpin-helix domain AFR_10550 PF03668 AFR_10550 AFR_10555 PF01933 Uncharacterised protein family UPF0052 AFR_10560 PF02650 WhiA C-terminal HTH domain AFR_10560 PF10298 WhiA N-terminal LAGLIDADG-like domain AFR_10560 PF14527 WhiA LAGLIDADG-like domain AFR_10565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_10565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFR_10570 PF00162 Phosphoglycerate kinase AFR_10575 PF00121 Triosephosphate isomerase AFR_10580 PF03840 Preprotein translocase SecG subunit AFR_10585 PF13397 Domain of unknown function (DUF4109) AFR_10590 PF00583 Acetyltransferase (GNAT) family AFR_10600 PF04542 Sigma-70 region 2 AFR_10600 PF08281 Sigma-70, region 4 AFR_10610 PF01313 AFR_10610 AFR_10615 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AFR_10620 PF10128 AFR_10620 AFR_10625 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFR_10625 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFR_10635 PF00923 Transaldolase AFR_10640 PF00456 Transketolase, thiamine diphosphate binding domain AFR_10640 PF02779 Transketolase, pyrimidine binding domain AFR_10640 PF02780 Transketolase, C-terminal domain AFR_10645 PF01040 UbiA prenyltransferase family AFR_10655 PF02628 AFR_10655 AFR_10660 PF01022 Bacterial regulatory protein, arsR family AFR_10665 PF01458 Uncharacterized protein family (UPF0051) AFR_10670 PF01458 Uncharacterized protein family (UPF0051) AFR_10675 PF00355 Rieske [2Fe-2S] domain AFR_10680 PF00005 ABC transporter AFR_10685 PF00266 Aminotransferase class-V AFR_10690 PF01592 NifU-like N terminal domain AFR_10695 PF01883 Domain of unknown function DUF59 AFR_10700 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_10705 PF00107 Zinc-binding dehydrogenase AFR_10705 PF08240 Alcohol dehydrogenase GroES-like domain AFR_10710 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_10715 PF08450 SMP-30/Gluconolaconase/LRE-like region AFR_10720 PF01614 Bacterial transcriptional regulator AFR_10720 PF09339 IclR helix-turn-helix domain AFR_10725 PF00920 Dehydratase family AFR_10730 PF07398 AFR_10730 AFR_10730 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_10735 PF00300 Histidine phosphatase superfamily (branch 1) AFR_10740 PF01810 AFR_10740 AFR_10745 PF08713 DNA alkylation repair enzyme AFR_10750 PF13560 Helix-turn-helix domain AFR_10755 PF13560 Helix-turn-helix domain AFR_10760 PF13560 Helix-turn-helix domain AFR_10775 PF04228 AFR_10775 AFR_10780 PF00005 ABC transporter AFR_10780 PF12848 ABC transporter AFR_10790 PF00378 Enoyl-CoA hydratase/isomerase family AFR_10795 PF00005 ABC transporter AFR_10795 PF00664 ABC transporter transmembrane region AFR_10810 PF13302 Acetyltransferase (GNAT) domain AFR_10815 PF03795 YCII-related domain AFR_10820 PF00722 Glycosyl hydrolases family 16 AFR_10825 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_10830 PF12840 Helix-turn-helix domain AFR_10835 PF00856 SET domain AFR_10840 PF03167 Uracil DNA glycosylase superfamily AFR_10845 PF01225 Mur ligase family, catalytic domain AFR_10845 PF02875 Mur ligase family, glutamate ligase domain AFR_10845 PF08245 Mur ligase middle domain AFR_10850 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_10855 PF13560 Helix-turn-helix domain AFR_10860 PF12680 SnoaL-like domain AFR_10865 PF07883 Cupin domain AFR_10870 PF01613 Flavin reductase like domain AFR_10875 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_10885 PF05114 Protein of unknown function (DUF692) AFR_10895 PF00440 Bacterial regulatory proteins, tetR family AFR_10900 PF13419 Haloacid dehalogenase-like hydrolase AFR_10905 PF01163 RIO1 family AFR_10910 PF10944 AFR_10910 AFR_10915 PF00120 Glutamine synthetase, catalytic domain AFR_10915 PF03951 Glutamine synthetase, beta-Grasp domain AFR_10925 PF00486 Transcriptional regulatory protein, C terminal AFR_10930 PF00330 Aconitase family (aconitate hydratase) AFR_10930 PF00694 Aconitase C-terminal domain AFR_10940 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_10940 PF03714 Bacterial pullanase-associated domain AFR_10940 PF11852 Domain of unknown function (DUF3372) AFR_10950 PF00440 Bacterial regulatory proteins, tetR family AFR_10950 PF14278 AFR_10950 AFR_10955 PF13649 Methyltransferase domain AFR_10960 PF00440 Bacterial regulatory proteins, tetR family AFR_10965 PF01494 FAD binding domain AFR_10970 PF00557 Metallopeptidase family M24 AFR_10970 PF05195 Aminopeptidase P, N-terminal domain AFR_10975 PF00080 Copper/zinc superoxide dismutase (SODC) AFR_10980 PF00294 pfkB family carbohydrate kinase AFR_10985 PF03061 Thioesterase superfamily AFR_10990 PF03703 AFR_10990 AFR_10995 PF03703 AFR_10995 AFR_11005 PF07726 ATPase family associated with various cellular activities (AAA) AFR_11010 PF01882 AFR_11010 AFR_11015 PF13519 von Willebrand factor type A domain AFR_11020 PF01757 AFR_11020 AFR_11025 PF06259 Alpha/beta hydrolase AFR_11030 PF00072 Response regulator receiver domain AFR_11030 PF00196 Bacterial regulatory proteins, luxR family AFR_11035 PF07730 Histidine kinase AFR_11040 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_11045 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_11055 PF00762 Ferrochelatase AFR_11060 PF13242 HAD-hyrolase-like AFR_11060 PF13344 Haloacid dehalogenase-like hydrolase AFR_11065 PF12697 Alpha/beta hydrolase family AFR_11070 PF00293 NUDIX domain AFR_11075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_11075 PF00672 HAMP domain AFR_11080 PF13560 Helix-turn-helix domain AFR_11085 PF00106 short chain dehydrogenase AFR_11090 PF00293 NUDIX domain AFR_11100 PF11296 AFR_11100 AFR_11105 PF12840 Helix-turn-helix domain AFR_11110 PF13714 Phosphoenolpyruvate phosphomutase AFR_11115 PF00144 Beta-lactamase AFR_11120 PF01957 NfeD-like C-terminal, partner-binding AFR_11125 PF01145 SPFH domain / Band 7 family AFR_11135 PF01872 RibD C-terminal domain AFR_11140 PF00588 SpoU rRNA Methylase family AFR_11145 PF13302 Acetyltransferase (GNAT) domain AFR_11150 PF00155 Aminotransferase class I and II AFR_11160 PF00175 Oxidoreductase NAD-binding domain AFR_11160 PF00970 Oxidoreductase FAD-binding domain AFR_11165 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_11175 PF08245 Mur ligase middle domain AFR_11180 PF01380 SIS domain AFR_11180 PF01418 Helix-turn-helix domain, rpiR family AFR_11185 PF13416 Bacterial extracellular solute-binding protein AFR_11190 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11195 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11200 PF01547 Bacterial extracellular solute-binding protein AFR_11205 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11210 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11215 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_11220 PF07690 Major Facilitator Superfamily AFR_11225 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_11225 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_11225 PF14310 Fibronectin type III-like domain AFR_11230 PF00440 Bacterial regulatory proteins, tetR family AFR_11230 PF13977 Bacterial transcriptional repressor AFR_11235 PF00476 DNA polymerase family A AFR_11245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_11245 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_11245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_11250 PF01590 GAF domain AFR_11255 PF03029 Conserved hypothetical ATP binding protein AFR_11260 PF05331 AFR_11260 AFR_11265 PF03259 Roadblock/LC7 domain AFR_11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_11275 PF00291 Pyridoxal-phosphate dependent enzyme AFR_11280 PF05731 TROVE domain AFR_11285 PF14534 Domain of unknown function (DUF4440) AFR_11290 PF04307 AFR_11290 AFR_11295 PF08044 AFR_11295 AFR_11300 PF07730 Histidine kinase AFR_11305 PF00072 Response regulator receiver domain AFR_11305 PF00196 Bacterial regulatory proteins, luxR family AFR_11310 PF03466 LysR substrate binding domain AFR_11330 PF00293 NUDIX domain AFR_11335 PF01047 MarR family AFR_11340 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_11345 PF12680 SnoaL-like domain AFR_11350 PF06445 GyrI-like small molecule binding domain AFR_11350 PF13411 MerR HTH family regulatory protein AFR_11355 PF01925 AFR_11355 AFR_11365 PF00296 Luciferase-like monooxygenase AFR_11375 PF00459 Inositol monophosphatase family AFR_11390 PF01323 DSBA-like thioredoxin domain AFR_11395 PF01547 Bacterial extracellular solute-binding protein AFR_11400 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11405 PF00528 Binding-protein-dependent transport system inner membrane component AFR_11410 PF00005 ABC transporter AFR_11415 PF12680 SnoaL-like domain AFR_11435 PF11958 Domain of unknown function (DUF3472) AFR_11440 PF00248 Aldo/keto reductase family AFR_11445 PF00512 His Kinase A (phospho-acceptor) domain AFR_11445 PF00672 HAMP domain AFR_11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_11450 PF00072 Response regulator receiver domain AFR_11450 PF00486 Transcriptional regulatory protein, C terminal AFR_11460 PF00117 Glutamine amidotransferase class-I AFR_11460 PF00425 chorismate binding enzyme AFR_11475 PF00072 Response regulator receiver domain AFR_11480 PF00512 His Kinase A (phospho-acceptor) domain AFR_11480 PF00672 HAMP domain AFR_11480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_11480 PF05227 CHASE3 domain AFR_11485 PF00144 Beta-lactamase AFR_11490 PF00356 Bacterial regulatory proteins, lacI family AFR_11490 PF13377 Periplasmic binding protein-like domain AFR_11495 PF00128 Alpha amylase, catalytic domain AFR_11495 PF11941 Domain of unknown function (DUF3459) AFR_11505 PF13649 Methyltransferase domain AFR_11515 PF01638 HxlR-like helix-turn-helix AFR_11520 PF00248 Aldo/keto reductase family AFR_11525 PF06224 AFR_11525 AFR_11530 PF04264 YceI-like domain AFR_11535 PF02687 AFR_11535 AFR_11540 PF00005 ABC transporter AFR_11550 PF00155 Aminotransferase class I and II AFR_11560 PF00652 Ricin-type beta-trefoil lectin domain AFR_11565 PF00512 His Kinase A (phospho-acceptor) domain AFR_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_11570 PF00072 Response regulator receiver domain AFR_11575 PF13646 HEAT repeats AFR_11580 PF00535 Glycosyl transferase family 2 AFR_11585 PF11361 AFR_11585 AFR_11590 PF00931 NB-ARC domain AFR_11590 PF13424 Tetratricopeptide repeat AFR_11590 PF13560 Helix-turn-helix domain AFR_11595 PF07228 Stage II sporulation protein E (SpoIIE) AFR_11600 PF01569 PAP2 superfamily AFR_11605 PF00196 Bacterial regulatory proteins, luxR family AFR_11610 PF04892 AFR_11610 AFR_11615 PF13439 Glycosyltransferase Family 4 AFR_11615 PF13692 Glycosyl transferases group 1 AFR_11620 PF02719 Polysaccharide biosynthesis protein AFR_11620 PF13727 CoA-binding domain AFR_11625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_11625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_11625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_11630 PF02397 AFR_11630 AFR_11640 PF03795 YCII-related domain AFR_11645 PF01370 NAD dependent epimerase/dehydratase family AFR_11650 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_11655 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_11660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_11660 PF03466 LysR substrate binding domain AFR_11670 PF00561 alpha/beta hydrolase fold AFR_11675 PF00583 Acetyltransferase (GNAT) family AFR_11680 PF01494 FAD binding domain AFR_11685 PF13480 Acetyltransferase (GNAT) domain AFR_11695 PF04932 AFR_11695 AFR_11705 PF06564 YhjQ protein AFR_11710 PF13579 Glycosyl transferase 4-like domain AFR_11710 PF13692 Glycosyl transferases group 1 AFR_11715 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFR_11720 PF01522 Polysaccharide deacetylase AFR_11725 PF13480 Acetyltransferase (GNAT) domain AFR_11735 PF12158 AFR_11735 AFR_11740 PF11625 Protein of unknown function (DUF3253) AFR_11755 PF13302 Acetyltransferase (GNAT) domain AFR_11760 PF01872 RibD C-terminal domain AFR_11770 PF01569 PAP2 superfamily AFR_11780 PF15892 AFR_11780 AFR_11785 PF13302 Acetyltransferase (GNAT) domain AFR_11795 PF13480 Acetyltransferase (GNAT) domain AFR_11800 PF00583 Acetyltransferase (GNAT) family AFR_11800 PF12802 MarR family AFR_11805 PF01047 MarR family AFR_11810 PF00107 Zinc-binding dehydrogenase AFR_11810 PF08240 Alcohol dehydrogenase GroES-like domain AFR_11815 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_11825 PF13302 Acetyltransferase (GNAT) domain AFR_11830 PF08922 Domain of unknown function (DUF1905) AFR_11835 PF05977 Transmembrane secretion effector AFR_11840 PF00270 DEAD/DEAH box helicase AFR_11840 PF00271 Helicase conserved C-terminal domain AFR_11840 PF16124 AFR_11840 AFR_11845 PF00893 Small Multidrug Resistance protein AFR_11850 PF12833 Helix-turn-helix domain AFR_11850 PF14525 AFR_11850 AFR_11855 PF00196 Bacterial regulatory proteins, luxR family AFR_11855 PF13191 AAA ATPase domain AFR_11860 PF12706 Beta-lactamase superfamily domain AFR_11865 PF12833 Helix-turn-helix domain AFR_11870 PF12697 Alpha/beta hydrolase family AFR_11875 PF12697 Alpha/beta hydrolase family AFR_11880 PF13560 Helix-turn-helix domain AFR_11885 PF00557 Metallopeptidase family M24 AFR_11895 PF06441 Epoxide hydrolase N terminus AFR_11900 PF13466 STAS domain AFR_11905 PF13581 Histidine kinase-like ATPase domain AFR_11910 PF00563 EAL domain AFR_11910 PF00990 GGDEF domain AFR_11915 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_11920 PF03466 LysR substrate binding domain AFR_11925 PF12802 MarR family AFR_11930 PF14534 Domain of unknown function (DUF4440) AFR_11935 PF00196 Bacterial regulatory proteins, luxR family AFR_11935 PF13191 AAA ATPase domain AFR_11940 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_11945 PF00561 alpha/beta hydrolase fold AFR_11950 PF12697 Alpha/beta hydrolase family AFR_11955 PF00486 Transcriptional regulatory protein, C terminal AFR_11955 PF03704 Bacterial transcriptional activator domain AFR_11960 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_11965 PF00440 Bacterial regulatory proteins, tetR family AFR_11985 PF12697 Alpha/beta hydrolase family AFR_11990 PF00440 Bacterial regulatory proteins, tetR family AFR_11990 PF13305 WHG domain AFR_11995 PF06772 AFR_11995 AFR_12000 PF06197 AFR_12000 AFR_12005 PF06441 Epoxide hydrolase N terminus AFR_12010 PF03795 YCII-related domain AFR_12015 PF07228 Stage II sporulation protein E (SpoIIE) AFR_12020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_12025 PF08447 PAS fold AFR_12030 PF01545 Cation efflux family AFR_12035 PF12840 Helix-turn-helix domain AFR_12040 PF01841 Transglutaminase-like superfamily AFR_12045 PF01882 AFR_12045 AFR_12050 PF07726 ATPase family associated with various cellular activities (AAA) AFR_12055 PF00041 Fibronectin type III domain AFR_12075 PF13676 TIR domain AFR_12080 PF07728 AAA domain (dynein-related subfamily) AFR_12095 PF02450 Lecithin:cholesterol acyltransferase AFR_12100 PF14015 AFR_12100 AFR_12105 PF13676 TIR domain AFR_12115 PF13646 HEAT repeats AFR_12120 PF13271 AFR_12120 AFR_12125 PF00313 'Cold-shock' DNA-binding domain AFR_12140 PF04956 AFR_12140 AFR_12150 PF10935 AFR_12150 AFR_12155 PF13340 AFR_12155 AFR_12160 PF13586 AFR_12160 AFR_12170 PF13340 AFR_12170 AFR_12175 PF13586 AFR_12175 AFR_12180 PF12833 Helix-turn-helix domain AFR_12180 PF12852 Cupin AFR_12185 PF00106 short chain dehydrogenase AFR_12190 PF13340 AFR_12190 AFR_12195 PF13586 AFR_12195 AFR_12200 PF03575 Peptidase family S51 AFR_12200 PF04266 ASCH domain AFR_12205 PF00106 short chain dehydrogenase AFR_12220 PF13560 Helix-turn-helix domain AFR_12240 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_12245 PF00248 Aldo/keto reductase family AFR_12250 PF06902 Divergent 4Fe-4S mono-cluster AFR_12250 PF09360 Iron-binding zinc finger CDGSH type AFR_12255 PF14542 GCN5-related N-acetyl-transferase AFR_12270 PF00561 alpha/beta hydrolase fold AFR_12270 PF08386 TAP-like protein AFR_12275 PF13411 MerR HTH family regulatory protein AFR_12280 PF00196 Bacterial regulatory proteins, luxR family AFR_12280 PF13191 AAA ATPase domain AFR_12285 PF07730 Histidine kinase AFR_12290 PF07883 Cupin domain AFR_12295 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AFR_12305 PF06772 AFR_12305 AFR_12310 PF02517 CAAX protease self-immunity AFR_12325 PF00196 Bacterial regulatory proteins, luxR family AFR_12325 PF13191 AAA ATPase domain AFR_12330 PF05719 Golgi phosphoprotein 3 (GPP34) AFR_12335 PF12680 SnoaL-like domain AFR_12340 PF13411 MerR HTH family regulatory protein AFR_12350 PF12796 Ankyrin repeats (3 copies) AFR_12355 PF06441 Epoxide hydrolase N terminus AFR_12360 PF00072 Response regulator receiver domain AFR_12360 PF00196 Bacterial regulatory proteins, luxR family AFR_12365 PF07228 Stage II sporulation protein E (SpoIIE) AFR_12370 PF02683 AFR_12370 AFR_12375 PF00578 AhpC/TSA family AFR_12380 PF00141 Peroxidase AFR_12385 PF00230 Major intrinsic protein AFR_12390 PF13490 Putative zinc-finger AFR_12395 PF08281 Sigma-70, region 4 AFR_12400 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_12400 PF00553 Cellulose binding domain AFR_12405 PF00144 Beta-lactamase AFR_12410 PF00501 AMP-binding enzyme AFR_12410 PF00550 Phosphopantetheine attachment site AFR_12410 PF00668 Condensation domain AFR_12410 PF13193 AMP-binding enzyme C-terminal domain AFR_12415 PF00501 AMP-binding enzyme AFR_12415 PF00550 Phosphopantetheine attachment site AFR_12415 PF00668 Condensation domain AFR_12415 PF13193 AMP-binding enzyme C-terminal domain AFR_12420 PF05977 Transmembrane secretion effector AFR_12425 PF03621 MbtH-like protein AFR_12435 PF07730 Histidine kinase AFR_12440 PF00072 Response regulator receiver domain AFR_12440 PF00196 Bacterial regulatory proteins, luxR family AFR_12445 PF12697 Alpha/beta hydrolase family AFR_12460 PF01926 50S ribosome-binding GTPase AFR_12465 PF01926 50S ribosome-binding GTPase AFR_12480 PF00196 Bacterial regulatory proteins, luxR family AFR_12485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_12485 PF08376 Nitrate and nitrite sensing AFR_12490 PF05331 AFR_12490 AFR_12495 PF00553 Cellulose binding domain AFR_12500 PF02661 Fic/DOC family AFR_12515 PF00512 His Kinase A (phospho-acceptor) domain AFR_12515 PF00989 PAS fold AFR_12515 PF01590 GAF domain AFR_12515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_12520 PF00561 alpha/beta hydrolase fold AFR_12525 PF13349 AFR_12525 AFR_12530 PF12802 MarR family AFR_12530 PF13936 Helix-turn-helix domain AFR_12540 PF00072 Response regulator receiver domain AFR_12540 PF00196 Bacterial regulatory proteins, luxR family AFR_12545 PF07730 Histidine kinase AFR_12550 PF00561 alpha/beta hydrolase fold AFR_12555 PF00089 Trypsin AFR_12555 PF00652 Ricin-type beta-trefoil lectin domain AFR_12555 PF02983 Alpha-lytic protease prodomain AFR_12560 PF01061 AFR_12560 AFR_12565 PF00005 ABC transporter AFR_12570 PF00106 short chain dehydrogenase AFR_12575 PF00171 Aldehyde dehydrogenase family AFR_12580 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_12585 PF01614 Bacterial transcriptional regulator AFR_12585 PF09339 IclR helix-turn-helix domain AFR_12590 PF01547 Bacterial extracellular solute-binding protein AFR_12595 PF00528 Binding-protein-dependent transport system inner membrane component AFR_12600 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_12605 PF13560 Helix-turn-helix domain AFR_12610 PF08240 Alcohol dehydrogenase GroES-like domain AFR_12610 PF13602 Zinc-binding dehydrogenase AFR_12615 PF00107 Zinc-binding dehydrogenase AFR_12615 PF08240 Alcohol dehydrogenase GroES-like domain AFR_12620 PF12802 MarR family AFR_12625 PF01790 AFR_12625 AFR_12630 PF08022 AFR_12630 AFR_12635 PF00440 Bacterial regulatory proteins, tetR family AFR_12645 PF01872 RibD C-terminal domain AFR_12650 PF08279 HTH domain AFR_12650 PF13280 AFR_12650 AFR_12655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_12660 PF13360 PQQ-like domain AFR_12665 PF03795 YCII-related domain AFR_12670 PF01966 HD domain AFR_12675 PF01740 STAS domain AFR_12680 PF04072 Leucine carboxyl methyltransferase AFR_12685 PF14330 AFR_12685 AFR_12690 PF07287 AFR_12690 AFR_12695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_12695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_12700 PF07690 Major Facilitator Superfamily AFR_12705 PF00392 Bacterial regulatory proteins, gntR family AFR_12705 PF07729 FCD domain AFR_12710 PF00180 Isocitrate/isopropylmalate dehydrogenase AFR_12715 PF12833 Helix-turn-helix domain AFR_12715 PF12852 Cupin AFR_12720 PF08240 Alcohol dehydrogenase GroES-like domain AFR_12720 PF13602 Zinc-binding dehydrogenase AFR_12730 PF01797 Transposase IS200 like AFR_12735 PF01385 AFR_12735 AFR_12735 PF07282 AFR_12735 AFR_12735 PF12323 AFR_12735 AFR_12740 PF13649 Methyltransferase domain AFR_12750 PF00440 Bacterial regulatory proteins, tetR family AFR_12760 PF00440 Bacterial regulatory proteins, tetR family AFR_12760 PF16859 AFR_12760 AFR_12765 PF04909 Amidohydrolase AFR_12770 PF13560 Helix-turn-helix domain AFR_12775 PF13460 NADH(P)-binding AFR_12780 PF04542 Sigma-70 region 2 AFR_12780 PF08281 Sigma-70, region 4 AFR_12790 PF00005 ABC transporter AFR_12805 PF00106 short chain dehydrogenase AFR_12810 PF00440 Bacterial regulatory proteins, tetR family AFR_12815 PF03706 AFR_12815 AFR_12820 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_12825 PF00440 Bacterial regulatory proteins, tetR family AFR_12825 PF16859 AFR_12825 AFR_12830 PF01494 FAD binding domain AFR_12835 PF00652 Ricin-type beta-trefoil lectin domain AFR_12835 PF04616 Glycosyl hydrolases family 43 AFR_12840 PF00754 F5/8 type C domain AFR_12840 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_12845 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFR_12845 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFR_12845 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFR_12850 PF00004 ATPase family associated with various cellular activities (AAA) AFR_12850 PF01434 Peptidase family M41 AFR_12865 PF03551 Transcriptional regulator PadR-like family AFR_12870 PF00578 AhpC/TSA family AFR_12870 PF02683 AFR_12870 AFR_12875 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_12880 PF04542 Sigma-70 region 2 AFR_12880 PF08281 Sigma-70, region 4 AFR_12885 PF00440 Bacterial regulatory proteins, tetR family AFR_12890 PF01565 FAD binding domain AFR_12895 PF00106 short chain dehydrogenase AFR_12900 PF13560 Helix-turn-helix domain AFR_12910 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_12910 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_12915 PF07690 Major Facilitator Superfamily AFR_12920 PF01047 MarR family AFR_12930 PF01817 Chorismate mutase type II AFR_12935 PF04542 Sigma-70 region 2 AFR_12935 PF04545 Sigma-70, region 4 AFR_12940 PF00072 Response regulator receiver domain AFR_12940 PF00196 Bacterial regulatory proteins, luxR family AFR_12945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_12945 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_12950 PF12697 Alpha/beta hydrolase family AFR_12955 PF01965 DJ-1/PfpI family AFR_12955 PF12833 Helix-turn-helix domain AFR_12960 PF13560 Helix-turn-helix domain AFR_12965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_12970 PF00440 Bacterial regulatory proteins, tetR family AFR_12980 PF00440 Bacterial regulatory proteins, tetR family AFR_12985 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_12990 PF00248 Aldo/keto reductase family AFR_12995 PF00440 Bacterial regulatory proteins, tetR family AFR_13000 PF07690 Major Facilitator Superfamily AFR_13005 PF00144 Beta-lactamase AFR_13005 PF00561 alpha/beta hydrolase fold AFR_13010 PF00440 Bacterial regulatory proteins, tetR family AFR_13010 PF16859 AFR_13010 AFR_13015 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13015 PF13602 Zinc-binding dehydrogenase AFR_13020 PF13460 NADH(P)-binding AFR_13025 PF12802 MarR family AFR_13030 PF00106 short chain dehydrogenase AFR_13040 PF00440 Bacterial regulatory proteins, tetR family AFR_13045 PF12697 Alpha/beta hydrolase family AFR_13050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_13055 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_13060 PF00440 Bacterial regulatory proteins, tetR family AFR_13065 PF13407 Periplasmic binding protein domain AFR_13070 PF02653 AFR_13070 AFR_13075 PF00005 ABC transporter AFR_13080 PF02538 AFR_13080 AFR_13085 PF01968 Hydantoinase/oxoprolinase AFR_13085 PF05378 AFR_13085 AFR_13090 PF01494 FAD binding domain AFR_13095 PF12697 Alpha/beta hydrolase family AFR_13105 PF00732 GMC oxidoreductase AFR_13105 PF05199 GMC oxidoreductase AFR_13110 PF13347 MFS/sugar transport protein AFR_13115 PF00440 Bacterial regulatory proteins, tetR family AFR_13120 PF01074 Glycosyl hydrolases family 38 N-terminal domain AFR_13120 PF07748 Glycosyl hydrolases family 38 C-terminal domain AFR_13120 PF09261 Alpha mannosidase, middle domain AFR_13125 PF01965 DJ-1/PfpI family AFR_13130 PF00378 Enoyl-CoA hydratase/isomerase family AFR_13135 PF13411 MerR HTH family regulatory protein AFR_13140 PF01965 DJ-1/PfpI family AFR_13140 PF12833 Helix-turn-helix domain AFR_13145 PF00857 Isochorismatase family AFR_13150 PF00072 Response regulator receiver domain AFR_13150 PF00486 Transcriptional regulatory protein, C terminal AFR_13155 PF00512 His Kinase A (phospho-acceptor) domain AFR_13155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_13160 PF09852 AFR_13160 AFR_13165 PF13560 Helix-turn-helix domain AFR_13170 PF00106 short chain dehydrogenase AFR_13175 PF07366 SnoaL-like polyketide cyclase AFR_13180 PF00356 Bacterial regulatory proteins, lacI family AFR_13180 PF13377 Periplasmic binding protein-like domain AFR_13185 PF07859 alpha/beta hydrolase fold AFR_13190 PF01547 Bacterial extracellular solute-binding protein AFR_13195 PF00528 Binding-protein-dependent transport system inner membrane component AFR_13200 PF00528 Binding-protein-dependent transport system inner membrane component AFR_13205 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_13215 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13215 PF13602 Zinc-binding dehydrogenase AFR_13220 PF13305 WHG domain AFR_13225 PF00440 Bacterial regulatory proteins, tetR family AFR_13225 PF16859 AFR_13225 AFR_13230 PF01494 FAD binding domain AFR_13235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_13240 PF05593 AFR_13240 AFR_13250 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_13255 PF00106 short chain dehydrogenase AFR_13260 PF00440 Bacterial regulatory proteins, tetR family AFR_13265 PF01757 AFR_13265 AFR_13270 PF04542 Sigma-70 region 2 AFR_13270 PF08281 Sigma-70, region 4 AFR_13280 PF00089 Trypsin AFR_13285 PF00248 Aldo/keto reductase family AFR_13290 PF00440 Bacterial regulatory proteins, tetR family AFR_13295 PF13777 AFR_13295 AFR_13300 PF00296 Luciferase-like monooxygenase AFR_13305 PF05154 AFR_13305 AFR_13320 PF00072 Response regulator receiver domain AFR_13320 PF00486 Transcriptional regulatory protein, C terminal AFR_13325 PF00512 His Kinase A (phospho-acceptor) domain AFR_13325 PF00672 HAMP domain AFR_13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_13335 PF02687 AFR_13335 AFR_13335 PF12704 MacB-like periplasmic core domain AFR_13340 PF00106 short chain dehydrogenase AFR_13345 PF13560 Helix-turn-helix domain AFR_13355 PF00128 Alpha amylase, catalytic domain AFR_13365 PF00106 short chain dehydrogenase AFR_13370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_13370 PF03466 LysR substrate binding domain AFR_13375 PF00440 Bacterial regulatory proteins, tetR family AFR_13375 PF13977 Bacterial transcriptional repressor AFR_13380 PF12697 Alpha/beta hydrolase family AFR_13385 PF07690 Major Facilitator Superfamily AFR_13395 PF00392 Bacterial regulatory proteins, gntR family AFR_13405 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_13415 PF09346 SMI1 / KNR4 family (SUKH-1) AFR_13420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_13420 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_13420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_13430 PF01590 GAF domain AFR_13435 PF03029 Conserved hypothetical ATP binding protein AFR_13440 PF05331 AFR_13440 AFR_13445 PF03259 Roadblock/LC7 domain AFR_13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_13455 PF00392 Bacterial regulatory proteins, gntR family AFR_13455 PF07729 FCD domain AFR_13460 PF07690 Major Facilitator Superfamily AFR_13465 PF00004 ATPase family associated with various cellular activities (AAA) AFR_13465 PF02190 ATP-dependent protease La (LON) domain AFR_13465 PF05362 Lon protease (S16) C-terminal proteolytic domain AFR_13475 PF00248 Aldo/keto reductase family AFR_13480 PF00248 Aldo/keto reductase family AFR_13485 PF00106 short chain dehydrogenase AFR_13490 PF00440 Bacterial regulatory proteins, tetR family AFR_13490 PF13305 WHG domain AFR_13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_13495 PF03466 LysR substrate binding domain AFR_13500 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AFR_13505 PF07690 Major Facilitator Superfamily AFR_13510 PF04248 Domain of unknown function (DUF427) AFR_13515 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_13520 PF13560 Helix-turn-helix domain AFR_13525 PF04542 Sigma-70 region 2 AFR_13525 PF08281 Sigma-70, region 4 AFR_13535 PF13560 Helix-turn-helix domain AFR_13540 PF00106 short chain dehydrogenase AFR_13550 PF06723 MreB/Mbl protein AFR_13555 PF00571 CBS domain AFR_13555 PF04972 BON domain AFR_13560 PF13556 PucR C-terminal helix-turn-helix domain AFR_13565 PF11239 AFR_13565 AFR_13570 PF00571 CBS domain AFR_13570 PF04972 BON domain AFR_13575 PF01266 FAD dependent oxidoreductase AFR_13585 PF00440 Bacterial regulatory proteins, tetR family AFR_13595 PF00440 Bacterial regulatory proteins, tetR family AFR_13595 PF16859 AFR_13595 AFR_13600 PF13460 NADH(P)-binding AFR_13605 PF00106 short chain dehydrogenase AFR_13610 PF00754 F5/8 type C domain AFR_13620 PF10012 AFR_13620 AFR_13625 PF13560 Helix-turn-helix domain AFR_13630 PF00106 short chain dehydrogenase AFR_13630 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_13635 PF13560 Helix-turn-helix domain AFR_13640 PF00999 Sodium/hydrogen exchanger family AFR_13650 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_13655 PF00296 Luciferase-like monooxygenase AFR_13660 PF14079 AFR_13660 AFR_13665 PF00440 Bacterial regulatory proteins, tetR family AFR_13670 PF06081 AFR_13670 AFR_13675 PF03364 Polyketide cyclase / dehydrase and lipid transport AFR_13680 PF00107 Zinc-binding dehydrogenase AFR_13680 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13680 PF13823 Alcohol dehydrogenase GroES-associated AFR_13685 PF12833 Helix-turn-helix domain AFR_13685 PF14525 AFR_13685 AFR_13690 PF13466 STAS domain AFR_13695 PF01636 Phosphotransferase enzyme family AFR_13700 PF01554 MatE AFR_13705 PF00440 Bacterial regulatory proteins, tetR family AFR_13710 PF06197 AFR_13710 AFR_13720 PF00089 Trypsin AFR_13725 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_13730 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_13735 PF00072 Response regulator receiver domain AFR_13735 PF00196 Bacterial regulatory proteins, luxR family AFR_13740 PF07730 Histidine kinase AFR_13745 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_13750 PF00999 Sodium/hydrogen exchanger family AFR_13755 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13755 PF13602 Zinc-binding dehydrogenase AFR_13760 PF13411 MerR HTH family regulatory protein AFR_13765 PF00535 Glycosyl transferase family 2 AFR_13765 PF03552 Cellulose synthase AFR_13770 PF13437 HlyD family secretion protein AFR_13775 PF03639 Glycosyl hydrolase family 81 AFR_13785 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_13785 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_13795 PF00486 Transcriptional regulatory protein, C terminal AFR_13795 PF00722 Glycosyl hydrolases family 16 AFR_13795 PF03704 Bacterial transcriptional activator domain AFR_13800 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_13810 PF03814 AFR_13810 AFR_13815 PF00122 E1-E2 ATPase AFR_13815 PF00702 haloacid dehalogenase-like hydrolase AFR_13820 PF02669 AFR_13820 AFR_13825 PF00512 His Kinase A (phospho-acceptor) domain AFR_13825 PF00582 Universal stress protein family AFR_13825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_13825 PF02702 Osmosensitive K+ channel His kinase sensor domain AFR_13825 PF13493 Domain of unknown function (DUF4118) AFR_13835 PF00561 alpha/beta hydrolase fold AFR_13840 PF07690 Major Facilitator Superfamily AFR_13845 PF00440 Bacterial regulatory proteins, tetR family AFR_13845 PF16859 AFR_13845 AFR_13850 PF00106 short chain dehydrogenase AFR_13855 PF13560 Helix-turn-helix domain AFR_13865 PF14518 Iron-containing redox enzyme AFR_13870 PF13649 Methyltransferase domain AFR_13875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_13875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_13880 PF01266 FAD dependent oxidoreductase AFR_13885 PF03781 Sulfatase-modifying factor enzyme 1 AFR_13885 PF05729 NACHT domain AFR_13885 PF13271 AFR_13885 AFR_13890 PF13649 Methyltransferase domain AFR_13900 PF00440 Bacterial regulatory proteins, tetR family AFR_13910 PF03881 Fructosamine kinase AFR_13915 PF13620 Carboxypeptidase regulatory-like domain AFR_13920 PF03176 MMPL family AFR_13925 PF00801 PKD domain AFR_13925 PF07995 Glucose / Sorbosone dehydrogenase AFR_13925 PF13205 Bacterial Ig-like domain AFR_13935 PF01494 FAD binding domain AFR_13940 PF00990 GGDEF domain AFR_13945 PF00082 Subtilase family AFR_13950 PF00440 Bacterial regulatory proteins, tetR family AFR_13950 PF14246 AefR-like transcriptional repressor, C-terminal region AFR_13955 PF04075 Domain of unknown function (DUF385) AFR_13960 PF08240 Alcohol dehydrogenase GroES-like domain AFR_13965 PF13560 Helix-turn-helix domain AFR_13970 PF00106 short chain dehydrogenase AFR_13975 PF00188 Cysteine-rich secretory protein family AFR_13980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_13985 PF00528 Binding-protein-dependent transport system inner membrane component AFR_13990 PF00528 Binding-protein-dependent transport system inner membrane component AFR_13995 PF00005 ABC transporter AFR_13995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_14000 PF00005 ABC transporter AFR_14005 PF05443 ROS/MUCR transcriptional regulator protein AFR_14010 PF04542 Sigma-70 region 2 AFR_14010 PF08281 Sigma-70, region 4 AFR_14020 PF03929 AFR_14020 AFR_14025 PF04542 Sigma-70 region 2 AFR_14025 PF08281 Sigma-70, region 4 AFR_14030 PF05425 AFR_14030 AFR_14030 PF09678 AFR_14030 AFR_14040 PF04314 Protein of unknown function (DUF461) AFR_14045 PF04261 Dyp-type peroxidase family AFR_14050 PF04234 CopC domain AFR_14055 PF07690 Major Facilitator Superfamily AFR_14060 PF07730 Histidine kinase AFR_14065 PF00072 Response regulator receiver domain AFR_14065 PF00196 Bacterial regulatory proteins, luxR family AFR_14105 PF00563 EAL domain AFR_14110 PF07538 AFR_14110 AFR_14120 PF00206 Lyase AFR_14120 PF10397 Adenylosuccinate lyase C-terminus AFR_14130 PF11239 AFR_14130 AFR_14135 PF07228 Stage II sporulation protein E (SpoIIE) AFR_14150 PF00392 Bacterial regulatory proteins, gntR family AFR_14150 PF07729 FCD domain AFR_14155 PF12697 Alpha/beta hydrolase family AFR_14160 PF03458 AFR_14160 AFR_14165 PF00583 Acetyltransferase (GNAT) family AFR_14170 PF06445 GyrI-like small molecule binding domain AFR_14170 PF13411 MerR HTH family regulatory protein AFR_14175 PF01926 50S ribosome-binding GTPase AFR_14175 PF13167 AFR_14175 AFR_14175 PF16360 AFR_14175 AFR_14180 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_14180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_14180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_14185 PF00563 EAL domain AFR_14185 PF00990 GGDEF domain AFR_14190 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_14195 PF00583 Acetyltransferase (GNAT) family AFR_14200 PF01042 Endoribonuclease L-PSP AFR_14205 PF00561 alpha/beta hydrolase fold AFR_14210 PF00440 Bacterial regulatory proteins, tetR family AFR_14210 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_14215 PF01011 PQQ enzyme repeat AFR_14215 PF13360 PQQ-like domain AFR_14220 PF00107 Zinc-binding dehydrogenase AFR_14220 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14225 PF13508 Acetyltransferase (GNAT) domain AFR_14235 PF06445 GyrI-like small molecule binding domain AFR_14235 PF12833 Helix-turn-helix domain AFR_14240 PF04075 Domain of unknown function (DUF385) AFR_14245 PF01385 AFR_14245 AFR_14245 PF07282 AFR_14245 AFR_14245 PF12323 AFR_14245 AFR_14255 PF00535 Glycosyl transferase family 2 AFR_14260 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_14265 PF11239 AFR_14265 AFR_14270 PF00115 Cytochrome C and Quinol oxidase polypeptide I AFR_14275 PF03176 MMPL family AFR_14280 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14280 PF16912 AFR_14280 AFR_14285 PF03773 AFR_14285 AFR_14290 PF06965 Na+/H+ antiporter 1 AFR_14300 PF00005 ABC transporter AFR_14305 PF00144 Beta-lactamase AFR_14310 PF09234 Domain of unknown function (DUF1963) AFR_14315 PF04199 Putative cyclase AFR_14320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_14320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_14325 PF07971 Glycosyl hydrolase family 92 AFR_14330 PF00652 Ricin-type beta-trefoil lectin domain AFR_14330 PF11790 AFR_14330 AFR_14335 PF02779 Transketolase, pyrimidine binding domain AFR_14335 PF02780 Transketolase, C-terminal domain AFR_14335 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFR_14340 PF13302 Acetyltransferase (GNAT) domain AFR_14345 PF07690 Major Facilitator Superfamily AFR_14350 PF01547 Bacterial extracellular solute-binding protein AFR_14355 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14360 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14370 PF07080 Protein of unknown function (DUF1348) AFR_14375 PF02627 Carboxymuconolactone decarboxylase family AFR_14380 PF07336 Protein of unknown function (DUF1470) AFR_14380 PF11706 CGNR zinc finger AFR_14385 PF00440 Bacterial regulatory proteins, tetR family AFR_14390 PF01370 NAD dependent epimerase/dehydratase family AFR_14395 PF00440 Bacterial regulatory proteins, tetR family AFR_14400 PF00106 short chain dehydrogenase AFR_14405 PF04542 Sigma-70 region 2 AFR_14405 PF08281 Sigma-70, region 4 AFR_14415 PF00296 Luciferase-like monooxygenase AFR_14420 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_14425 PF00941 FAD binding domain in molybdopterin dehydrogenase AFR_14425 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFR_14430 PF00232 Glycosyl hydrolase family 1 AFR_14435 PF07690 Major Facilitator Superfamily AFR_14445 PF00892 EamA-like transporter family AFR_14455 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AFR_14460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_14460 PF03466 LysR substrate binding domain AFR_14470 PF04542 Sigma-70 region 2 AFR_14470 PF08281 Sigma-70, region 4 AFR_14490 PF03861 ANTAR domain AFR_14490 PF13185 GAF domain AFR_14495 PF03861 ANTAR domain AFR_14495 PF13185 GAF domain AFR_14500 PF03861 ANTAR domain AFR_14505 PF13560 Helix-turn-helix domain AFR_14510 PF00107 Zinc-binding dehydrogenase AFR_14510 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14515 PF02627 Carboxymuconolactone decarboxylase family AFR_14515 PF07883 Cupin domain AFR_14520 PF04126 Cyclophilin-like AFR_14535 PF00313 'Cold-shock' DNA-binding domain AFR_14540 PF01872 RibD C-terminal domain AFR_14545 PF12833 Helix-turn-helix domain AFR_14545 PF14525 AFR_14545 AFR_14550 PF00196 Bacterial regulatory proteins, luxR family AFR_14550 PF13191 AAA ATPase domain AFR_14555 PF12697 Alpha/beta hydrolase family AFR_14560 PF12697 Alpha/beta hydrolase family AFR_14565 PF12697 Alpha/beta hydrolase family AFR_14570 PF02525 Flavodoxin-like fold AFR_14580 PF12833 Helix-turn-helix domain AFR_14580 PF12852 Cupin AFR_14585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_14585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_14590 PF00005 ABC transporter AFR_14590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_14595 PF00005 ABC transporter AFR_14595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_14600 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14600 PF12911 AFR_14600 AFR_14605 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_14615 PF00501 AMP-binding enzyme AFR_14620 PF14124 AFR_14620 AFR_14625 PF06197 AFR_14625 AFR_14630 PF02417 AFR_14630 AFR_14635 PF12697 Alpha/beta hydrolase family AFR_14645 PF00759 Glycosyl hydrolase family 9 AFR_14645 PF02927 N-terminal ig-like domain of cellulase AFR_14650 PF12833 Helix-turn-helix domain AFR_14650 PF14525 AFR_14650 AFR_14655 PF03861 ANTAR domain AFR_14655 PF13185 GAF domain AFR_14665 PF01494 FAD binding domain AFR_14670 PF04237 YjbR AFR_14675 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_14680 PF00440 Bacterial regulatory proteins, tetR family AFR_14685 PF06441 Epoxide hydrolase N terminus AFR_14695 PF11512 Agrobacterium tumefaciens protein Atu4866 AFR_14700 PF00196 Bacterial regulatory proteins, luxR family AFR_14700 PF13191 AAA ATPase domain AFR_14705 PF00440 Bacterial regulatory proteins, tetR family AFR_14705 PF13305 WHG domain AFR_14710 PF07731 Multicopper oxidase AFR_14710 PF07732 Multicopper oxidase AFR_14715 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14715 PF13602 Zinc-binding dehydrogenase AFR_14720 PF01042 Endoribonuclease L-PSP AFR_14725 PF00106 short chain dehydrogenase AFR_14730 PF05719 Golgi phosphoprotein 3 (GPP34) AFR_14735 PF13354 Beta-lactamase enzyme family AFR_14740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_14745 PF13354 Beta-lactamase enzyme family AFR_14750 PF01872 RibD C-terminal domain AFR_14755 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_14760 PF12840 Helix-turn-helix domain AFR_14765 PF00457 Glycosyl hydrolases family 11 AFR_14770 PF03664 Glycosyl hydrolase family 62 AFR_14770 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_14775 PF01547 Bacterial extracellular solute-binding protein AFR_14780 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14785 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14790 PF03176 MMPL family AFR_14795 PF13564 AFR_14795 AFR_14805 PF07730 Histidine kinase AFR_14810 PF00072 Response regulator receiver domain AFR_14810 PF00196 Bacterial regulatory proteins, luxR family AFR_14815 PF00801 PKD domain AFR_14820 PF06348 AFR_14820 AFR_14825 PF00440 Bacterial regulatory proteins, tetR family AFR_14830 PF00106 short chain dehydrogenase AFR_14840 PF00069 Protein kinase domain AFR_14845 PF08240 Alcohol dehydrogenase GroES-like domain AFR_14845 PF13602 Zinc-binding dehydrogenase AFR_14850 PF13560 Helix-turn-helix domain AFR_14855 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_14860 PF12697 Alpha/beta hydrolase family AFR_14865 PF00486 Transcriptional regulatory protein, C terminal AFR_14865 PF03704 Bacterial transcriptional activator domain AFR_14865 PF13191 AAA ATPase domain AFR_14870 PF07721 Tetratricopeptide repeat AFR_14875 PF12833 Helix-turn-helix domain AFR_14880 PF07859 alpha/beta hydrolase fold AFR_14885 PF00106 short chain dehydrogenase AFR_14890 PF13560 Helix-turn-helix domain AFR_14895 PF00553 Cellulose binding domain AFR_14900 PF00553 Cellulose binding domain AFR_14900 PF03664 Glycosyl hydrolase family 62 AFR_14905 PF00553 Cellulose binding domain AFR_14905 PF04616 Glycosyl hydrolases family 43 AFR_14910 PF00331 Glycosyl hydrolase family 10 AFR_14910 PF00553 Cellulose binding domain AFR_14915 PF04542 Sigma-70 region 2 AFR_14915 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AFR_14925 PF00415 Regulator of chromosome condensation (RCC1) repeat AFR_14925 PF13540 Regulator of chromosome condensation (RCC1) repeat AFR_14930 PF04542 Sigma-70 region 2 AFR_14930 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AFR_14935 PF00069 Protein kinase domain AFR_14940 PF00480 ROK family AFR_14940 PF09339 IclR helix-turn-helix domain AFR_14945 PF02065 Melibiase AFR_14950 PF13416 Bacterial extracellular solute-binding protein AFR_14955 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14960 PF00528 Binding-protein-dependent transport system inner membrane component AFR_14965 PF16116 AFR_14965 AFR_14970 PF16116 AFR_14970 AFR_14975 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AFR_14975 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AFR_14980 PF00652 Ricin-type beta-trefoil lectin domain AFR_14980 PF06439 Domain of Unknown Function (DUF1080) AFR_14980 PF07691 PA14 domain AFR_14980 PF16990 AFR_14980 AFR_14985 PF08668 HDOD domain AFR_14990 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_15005 PF00753 Metallo-beta-lactamase superfamily AFR_15010 PF02627 Carboxymuconolactone decarboxylase family AFR_15015 PF01344 Kelch motif AFR_15015 PF07646 Kelch motif AFR_15015 PF13964 Kelch motif AFR_15020 PF01047 MarR family AFR_15025 PF06441 Epoxide hydrolase N terminus AFR_15045 PF00512 His Kinase A (phospho-acceptor) domain AFR_15045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_15050 PF00072 Response regulator receiver domain AFR_15050 PF00486 Transcriptional regulatory protein, C terminal AFR_15055 PF00005 ABC transporter AFR_15065 PF12679 AFR_15065 AFR_15085 PF04542 Sigma-70 region 2 AFR_15085 PF08281 Sigma-70, region 4 AFR_15090 PF03795 YCII-related domain AFR_15095 PF01156 Inosine-uridine preferring nucleoside hydrolase AFR_15100 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_15105 PF00248 Aldo/keto reductase family AFR_15110 PF00107 Zinc-binding dehydrogenase AFR_15110 PF08240 Alcohol dehydrogenase GroES-like domain AFR_15115 PF13460 NADH(P)-binding AFR_15120 PF01638 HxlR-like helix-turn-helix AFR_15125 PF00440 Bacterial regulatory proteins, tetR family AFR_15130 PF00005 ABC transporter AFR_15135 PF12730 AFR_15135 AFR_15140 PF00703 Glycosyl hydrolases family 2 AFR_15140 PF02837 Glycosyl hydrolases family 2, sugar binding domain AFR_15140 PF07691 PA14 domain AFR_15140 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_15145 PF03466 LysR substrate binding domain AFR_15150 PF10012 AFR_15150 AFR_15160 PF01510 N-acetylmuramoyl-L-alanine amidase AFR_15165 PF05661 AFR_15165 AFR_15175 PF01161 Phosphatidylethanolamine-binding protein AFR_15180 PF00392 Bacterial regulatory proteins, gntR family AFR_15180 PF07729 FCD domain AFR_15185 PF08279 HTH domain AFR_15185 PF13280 AFR_15185 AFR_15190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_15195 PF05787 Bacterial protein of unknown function (DUF839) AFR_15200 PF01734 Patatin-like phospholipase AFR_15205 PF04185 Phosphoesterase family AFR_15205 PF05506 AFR_15205 AFR_15220 PF08450 SMP-30/Gluconolaconase/LRE-like region AFR_15225 PF06772 AFR_15225 AFR_15230 PF13649 Methyltransferase domain AFR_15235 PF07859 alpha/beta hydrolase fold AFR_15240 PF03992 Antibiotic biosynthesis monooxygenase AFR_15245 PF06719 AFR_15245 AFR_15245 PF12833 Helix-turn-helix domain AFR_15255 PF04542 Sigma-70 region 2 AFR_15255 PF08281 Sigma-70, region 4 AFR_15265 PF01475 Ferric uptake regulator family AFR_15270 PF00141 Peroxidase AFR_15275 PF00561 alpha/beta hydrolase fold AFR_15280 PF01638 HxlR-like helix-turn-helix AFR_15290 PF02156 Glycosyl hydrolase family 26 AFR_15300 PF00528 Binding-protein-dependent transport system inner membrane component AFR_15305 PF00528 Binding-protein-dependent transport system inner membrane component AFR_15310 PF01547 Bacterial extracellular solute-binding protein AFR_15315 PF13377 Periplasmic binding protein-like domain AFR_15320 PF00480 ROK family AFR_15325 PF06197 AFR_15325 AFR_15340 PF13560 Helix-turn-helix domain AFR_15345 PF08240 Alcohol dehydrogenase GroES-like domain AFR_15345 PF13602 Zinc-binding dehydrogenase AFR_15350 PF13086 AAA domain AFR_15350 PF13087 AAA domain AFR_15355 PF00905 Penicillin binding protein transpeptidase domain AFR_15355 PF00912 Transglycosylase AFR_15355 PF13354 Beta-lactamase enzyme family AFR_15360 PF13560 Helix-turn-helix domain AFR_15365 PF01814 Hemerythrin HHE cation binding domain AFR_15370 PF05977 Transmembrane secretion effector AFR_15375 PF00005 ABC transporter AFR_15385 PF04087 AFR_15385 AFR_15390 PF00990 GGDEF domain AFR_15405 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_15415 PF07859 alpha/beta hydrolase fold AFR_15425 PF00512 His Kinase A (phospho-acceptor) domain AFR_15425 PF00672 HAMP domain AFR_15425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_15430 PF00072 Response regulator receiver domain AFR_15430 PF00486 Transcriptional regulatory protein, C terminal AFR_15435 PF03992 Antibiotic biosynthesis monooxygenase AFR_15440 PF10503 Esterase PHB depolymerase AFR_15445 PF03403 Platelet-activating factor acetylhydrolase, isoform II AFR_15450 PF00106 short chain dehydrogenase AFR_15455 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_15460 PF12833 Helix-turn-helix domain AFR_15465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_15465 PF00672 HAMP domain AFR_15465 PF12729 AFR_15465 AFR_15470 PF00440 Bacterial regulatory proteins, tetR family AFR_15480 PF00652 Ricin-type beta-trefoil lectin domain AFR_15480 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_15485 PF07971 Glycosyl hydrolase family 92 AFR_15490 PF07971 Glycosyl hydrolase family 92 AFR_15495 PF02557 D-alanyl-D-alanine carboxypeptidase AFR_15500 PF14106 AFR_15500 AFR_15510 PF00296 Luciferase-like monooxygenase AFR_15515 PF00440 Bacterial regulatory proteins, tetR family AFR_15515 PF13305 WHG domain AFR_15525 PF00132 Bacterial transferase hexapeptide (six repeats) AFR_15525 PF00501 AMP-binding enzyme AFR_15525 PF00550 Phosphopantetheine attachment site AFR_15530 PF01433 Peptidase family M1 AFR_15535 PF06439 Domain of Unknown Function (DUF1080) AFR_15535 PF07691 PA14 domain AFR_15535 PF16990 AFR_15535 AFR_15545 PF12802 MarR family AFR_15550 PF12697 Alpha/beta hydrolase family AFR_15575 PF08445 FR47-like protein AFR_15590 PF04616 Glycosyl hydrolases family 43 AFR_15595 PF13360 PQQ-like domain AFR_15600 PF06445 GyrI-like small molecule binding domain AFR_15600 PF12833 Helix-turn-helix domain AFR_15605 PF00106 short chain dehydrogenase AFR_15610 PF00440 Bacterial regulatory proteins, tetR family AFR_15615 PF07731 Multicopper oxidase AFR_15615 PF07732 Multicopper oxidase AFR_15620 PF00754 F5/8 type C domain AFR_15620 PF00801 PKD domain AFR_15620 PF06283 Trehalose utilisation AFR_15620 PF06439 Domain of Unknown Function (DUF1080) AFR_15620 PF07995 Glucose / Sorbosone dehydrogenase AFR_15625 PF00127 Copper binding proteins, plastocyanin/azurin family AFR_15625 PF12245 Bacterial Ig-like domain (group 3) AFR_15635 PF13489 Methyltransferase domain AFR_15645 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_15650 PF02627 Carboxymuconolactone decarboxylase family AFR_15655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_15655 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_15660 PF07883 Cupin domain AFR_15665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_15665 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_15670 PF00753 Metallo-beta-lactamase superfamily AFR_15680 PF00005 ABC transporter AFR_15680 PF08402 TOBE domain AFR_15685 PF00528 Binding-protein-dependent transport system inner membrane component AFR_15690 PF13416 Bacterial extracellular solute-binding protein AFR_15695 PF01614 Bacterial transcriptional regulator AFR_15695 PF09339 IclR helix-turn-helix domain AFR_15700 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_15705 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_15705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_15705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_15710 PF02627 Carboxymuconolactone decarboxylase family AFR_15715 PF00392 Bacterial regulatory proteins, gntR family AFR_15715 PF07729 FCD domain AFR_15720 PF03328 HpcH/HpaI aldolase/citrate lyase family AFR_15730 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFR_15735 PF00753 Metallo-beta-lactamase superfamily AFR_15740 PF02627 Carboxymuconolactone decarboxylase family AFR_15750 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_15755 PF00171 Aldehyde dehydrogenase family AFR_15760 PF01636 Phosphotransferase enzyme family AFR_15765 PF07690 Major Facilitator Superfamily AFR_15770 PF07336 Protein of unknown function (DUF1470) AFR_15770 PF11706 CGNR zinc finger AFR_15775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_15775 PF03466 LysR substrate binding domain AFR_15790 PF13649 Methyltransferase domain AFR_15795 PF00544 Pectate lyase AFR_15800 PF12697 Alpha/beta hydrolase family AFR_15805 PF04231 Endonuclease I AFR_15810 PF00491 Arginase family AFR_15820 PF00652 Ricin-type beta-trefoil lectin domain AFR_15820 PF07591 Pretoxin HINT domain AFR_15830 PF09346 SMI1 / KNR4 family (SUKH-1) AFR_15845 PF00248 Aldo/keto reductase family AFR_15850 PF00440 Bacterial regulatory proteins, tetR family AFR_15855 PF03401 Tripartite tricarboxylate transporter family receptor AFR_15860 PF07331 AFR_15860 AFR_15865 PF01970 AFR_15865 AFR_15870 PF03401 Tripartite tricarboxylate transporter family receptor AFR_15875 PF00989 PAS fold AFR_15875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_15875 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AFR_15875 PF17203 AFR_15875 AFR_15880 PF00072 Response regulator receiver domain AFR_15885 PF00931 NB-ARC domain AFR_15885 PF13176 Tetratricopeptide repeat AFR_15885 PF13424 Tetratricopeptide repeat AFR_15890 PF00132 Bacterial transferase hexapeptide (six repeats) AFR_15890 PF14602 Hexapeptide repeat of succinyl-transferase AFR_15895 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_15900 PF01370 NAD dependent epimerase/dehydratase family AFR_15905 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFR_15915 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AFR_15920 PF07690 Major Facilitator Superfamily AFR_15930 PF13205 Bacterial Ig-like domain AFR_15930 PF13313 AFR_15930 AFR_15935 PF00550 Phosphopantetheine attachment site AFR_15940 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_15940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_15945 PF00501 AMP-binding enzyme AFR_15945 PF13193 AMP-binding enzyme C-terminal domain AFR_15960 PF13229 Right handed beta helix region AFR_15965 PF01061 AFR_15965 AFR_15970 PF00005 ABC transporter AFR_15975 PF00535 Glycosyl transferase family 2 AFR_15985 PF04932 AFR_15985 AFR_15995 PF13579 Glycosyl transferase 4-like domain AFR_15995 PF13692 Glycosyl transferases group 1 AFR_16000 PF00535 Glycosyl transferase family 2 AFR_16005 PF01522 Polysaccharide deacetylase AFR_16010 PF00535 Glycosyl transferase family 2 AFR_16015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_16015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_16015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_16020 PF02397 AFR_16020 AFR_16025 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AFR_16030 PF00483 Nucleotidyl transferase AFR_16035 PF16363 AFR_16035 AFR_16040 PF04321 RmlD substrate binding domain AFR_16045 PF00107 Zinc-binding dehydrogenase AFR_16055 PF00685 Sulfotransferase domain AFR_16060 PF01261 Xylose isomerase-like TIM barrel AFR_16065 PF00440 Bacterial regulatory proteins, tetR family AFR_16070 PF08501 Shikimate dehydrogenase substrate binding domain AFR_16080 PF07690 Major Facilitator Superfamily AFR_16085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_16085 PF03466 LysR substrate binding domain AFR_16095 PF12840 Helix-turn-helix domain AFR_16100 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_16105 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_16115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AFR_16120 PF01037 AsnC family AFR_16120 PF13412 Winged helix-turn-helix DNA-binding AFR_16135 PF00291 Pyridoxal-phosphate dependent enzyme AFR_16140 PF04234 CopC domain AFR_16145 PF00072 Response regulator receiver domain AFR_16145 PF00196 Bacterial regulatory proteins, luxR family AFR_16150 PF07730 Histidine kinase AFR_16155 PF03176 MMPL family AFR_16165 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_16165 PF13653 Glycerophosphoryl diester phosphodiesterase family AFR_16180 PF00069 Protein kinase domain AFR_16195 PF01453 D-mannose binding lectin AFR_16195 PF01464 Transglycosylase SLT domain AFR_16200 PF00877 NlpC/P60 family AFR_16200 PF01453 D-mannose binding lectin AFR_16205 PF00248 Aldo/keto reductase family AFR_16210 PF07676 WD40-like Beta Propeller Repeat AFR_16215 PF13407 Periplasmic binding protein domain AFR_16220 PF00005 ABC transporter AFR_16225 PF02653 AFR_16225 AFR_16230 PF00480 ROK family AFR_16235 PF11239 AFR_16235 AFR_16250 PF07730 Histidine kinase AFR_16255 PF00072 Response regulator receiver domain AFR_16255 PF00196 Bacterial regulatory proteins, luxR family AFR_16260 PF08410 AFR_16260 AFR_16265 PF00440 Bacterial regulatory proteins, tetR family AFR_16265 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_16270 PF01494 FAD binding domain AFR_16275 PF11150 AFR_16275 AFR_16280 PF03781 Sulfatase-modifying factor enzyme 1 AFR_16295 PF05762 VWA domain containing CoxE-like protein AFR_16300 PF07728 AAA domain (dynein-related subfamily) AFR_16310 PF14362 AFR_16310 AFR_16345 PF00905 Penicillin binding protein transpeptidase domain AFR_16345 PF01098 AFR_16345 AFR_16350 PF00753 Metallo-beta-lactamase superfamily AFR_16355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_16355 PF03466 LysR substrate binding domain AFR_16360 PF00106 short chain dehydrogenase AFR_16365 PF00553 Cellulose binding domain AFR_16370 PF01040 UbiA prenyltransferase family AFR_16375 PF02733 Dak1 domain AFR_16380 PF02734 DAK2 domain AFR_16385 PF00381 PTS HPr component phosphorylation site AFR_16385 PF00391 PEP-utilising enzyme, mobile domain AFR_16385 PF02896 PEP-utilising enzyme, TIM barrel domain AFR_16385 PF03610 PTS system fructose IIA component AFR_16385 PF05524 PEP-utilising enzyme, N-terminal AFR_16390 PF07690 Major Facilitator Superfamily AFR_16400 PF01738 Dienelactone hydrolase family AFR_16405 PF11017 AFR_16405 AFR_16420 PF04542 Sigma-70 region 2 AFR_16420 PF08281 Sigma-70, region 4 AFR_16425 PF00082 Subtilase family AFR_16430 PF05977 Transmembrane secretion effector AFR_16440 PF00293 NUDIX domain AFR_16445 PF04616 Glycosyl hydrolases family 43 AFR_16445 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_16450 PF13527 Acetyltransferase (GNAT) domain AFR_16455 PF13229 Right handed beta helix region AFR_16460 PF13520 Amino acid permease AFR_16470 PF12850 Calcineurin-like phosphoesterase superfamily domain AFR_16475 PF00440 Bacterial regulatory proteins, tetR family AFR_16480 PF00083 Sugar (and other) transporter AFR_16480 PF07690 Major Facilitator Superfamily AFR_16485 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_16495 PF07394 AFR_16495 AFR_16500 PF08811 AFR_16500 AFR_16505 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_16505 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_16505 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_16510 PF13231 AFR_16510 AFR_16515 PF01757 AFR_16515 AFR_16520 PF13632 Glycosyl transferase family group 2 AFR_16540 PF07690 Major Facilitator Superfamily AFR_16545 PF00221 Aromatic amino acid lyase AFR_16550 PF05995 Cysteine dioxygenase type I AFR_16570 PF13185 GAF domain AFR_16575 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFR_16580 PF00106 short chain dehydrogenase AFR_16585 PF00294 pfkB family carbohydrate kinase AFR_16585 PF01467 Cytidylyltransferase AFR_16590 PF13580 SIS domain AFR_16595 PF00534 Glycosyl transferases group 1 AFR_16595 PF13439 Glycosyltransferase Family 4 AFR_16600 PF00534 Glycosyl transferases group 1 AFR_16605 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AFR_16605 PF13242 HAD-hyrolase-like AFR_16610 PF00535 Glycosyl transferase family 2 AFR_16615 PF02543 Carbamoyltransferase AFR_16615 PF16861 AFR_16615 AFR_16620 PF00171 Aldehyde dehydrogenase family AFR_16625 PF03861 ANTAR domain AFR_16625 PF13185 GAF domain AFR_16630 PF03861 ANTAR domain AFR_16630 PF13185 GAF domain AFR_16635 PF04539 Sigma-70 region 3 AFR_16635 PF04542 Sigma-70 region 2 AFR_16635 PF04545 Sigma-70, region 4 AFR_16640 PF00406 Adenylate kinase AFR_16645 PF00005 ABC transporter AFR_16650 PF01497 Periplasmic binding protein AFR_16655 PF01032 FecCD transport family AFR_16665 PF00285 Citrate synthase AFR_16670 PF00285 Citrate synthase AFR_16670 PF12728 Helix-turn-helix domain AFR_16680 PF00067 Cytochrome P450 AFR_16685 PF00089 Trypsin AFR_16690 PF01594 AFR_16690 AFR_16695 PF13847 Methyltransferase domain AFR_16700 PF13521 AAA domain AFR_16705 PF12006 AFR_16705 AFR_16710 PF00754 F5/8 type C domain AFR_16710 PF07995 Glucose / Sorbosone dehydrogenase AFR_16715 PF00391 PEP-utilising enzyme, mobile domain AFR_16715 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFR_16720 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AFR_16720 PF07676 WD40-like Beta Propeller Repeat AFR_16725 PF02687 AFR_16725 AFR_16725 PF12704 MacB-like periplasmic core domain AFR_16730 PF00005 ABC transporter AFR_16735 PF01471 Putative peptidoglycan binding domain AFR_16755 PF04542 Sigma-70 region 2 AFR_16755 PF08281 Sigma-70, region 4 AFR_16760 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_16765 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_16770 PF12802 MarR family AFR_16775 PF02547 Queuosine biosynthesis protein AFR_16780 PF00106 short chain dehydrogenase AFR_16785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_16785 PF07730 Histidine kinase AFR_16785 PF13185 GAF domain AFR_16790 PF00072 Response regulator receiver domain AFR_16790 PF00196 Bacterial regulatory proteins, luxR family AFR_16795 PF12802 MarR family AFR_16800 PF01554 MatE AFR_16805 PF04672 S-adenosyl methyltransferase AFR_16810 PF05103 DivIVA protein AFR_16815 PF00356 Bacterial regulatory proteins, lacI family AFR_16815 PF13377 Periplasmic binding protein-like domain AFR_16820 PF09861 Domain of unknown function (DUF2088) AFR_16825 PF01261 Xylose isomerase-like TIM barrel AFR_16830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_16830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_16835 PF01261 Xylose isomerase-like TIM barrel AFR_16840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_16840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_16845 PF00528 Binding-protein-dependent transport system inner membrane component AFR_16850 PF00528 Binding-protein-dependent transport system inner membrane component AFR_16855 PF01547 Bacterial extracellular solute-binding protein AFR_16860 PF02614 Glucuronate isomerase AFR_16865 PF01232 Mannitol dehydrogenase Rossmann domain AFR_16865 PF08125 Mannitol dehydrogenase C-terminal domain AFR_16870 PF08241 Methyltransferase domain AFR_16875 PF13302 Acetyltransferase (GNAT) domain AFR_16880 PF12796 Ankyrin repeats (3 copies) AFR_16885 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_16890 PF09969 AFR_16890 AFR_16910 PF00171 Aldehyde dehydrogenase family AFR_16915 PF01037 AsnC family AFR_16915 PF13404 AsnC-type helix-turn-helix domain AFR_16920 PF00676 Dehydrogenase E1 component AFR_16925 PF02779 Transketolase, pyrimidine binding domain AFR_16925 PF02780 Transketolase, C-terminal domain AFR_16930 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFR_16930 PF00364 Biotin-requiring enzyme AFR_16930 PF02817 e3 binding domain AFR_16935 PF07690 Major Facilitator Superfamily AFR_16945 PF13377 Periplasmic binding protein-like domain AFR_16955 PF01019 Gamma-glutamyltranspeptidase AFR_16960 PF00486 Transcriptional regulatory protein, C terminal AFR_16965 PF00082 Subtilase family AFR_16965 PF01344 Kelch motif AFR_16965 PF13620 Carboxypeptidase regulatory-like domain AFR_16970 PF00486 Transcriptional regulatory protein, C terminal AFR_16975 PF06283 Trehalose utilisation AFR_16980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_16985 PF04041 Domain of unknown function (DUF377) AFR_16995 PF00563 EAL domain AFR_16995 PF00990 GGDEF domain AFR_17000 PF00155 Aminotransferase class I and II AFR_17005 PF13302 Acetyltransferase (GNAT) domain AFR_17015 PF00069 Protein kinase domain AFR_17020 PF10094 AFR_17020 AFR_17040 PF04542 Sigma-70 region 2 AFR_17040 PF08281 Sigma-70, region 4 AFR_17045 PF00781 Diacylglycerol kinase catalytic domain AFR_17050 PF00440 Bacterial regulatory proteins, tetR family AFR_17055 PF01494 FAD binding domain AFR_17060 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_17065 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_17070 PF12840 Helix-turn-helix domain AFR_17075 PF01872 RibD C-terminal domain AFR_17080 PF00282 Pyridoxal-dependent decarboxylase conserved domain AFR_17085 PF00563 EAL domain AFR_17085 PF00989 PAS fold AFR_17085 PF00990 GGDEF domain AFR_17090 PF00155 Aminotransferase class I and II AFR_17095 PF05977 Transmembrane secretion effector AFR_17100 PF13474 SnoaL-like domain AFR_17105 PF00652 Ricin-type beta-trefoil lectin domain AFR_17105 PF16499 AFR_17105 AFR_17110 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_17115 PF09335 AFR_17115 AFR_17120 PF00106 short chain dehydrogenase AFR_17125 PF13560 Helix-turn-helix domain AFR_17130 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_17135 PF01872 RibD C-terminal domain AFR_17140 PF13399 LytR cell envelope-related transcriptional attenuator AFR_17145 PF00480 ROK family AFR_17150 PF13407 Periplasmic binding protein domain AFR_17155 PF02653 AFR_17155 AFR_17160 PF00005 ABC transporter AFR_17165 PF00485 Phosphoribulokinase / Uridine kinase family AFR_17170 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_17185 PF00563 EAL domain AFR_17185 PF00990 GGDEF domain AFR_17190 PF00512 His Kinase A (phospho-acceptor) domain AFR_17190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_17190 PF03924 CHASE domain AFR_17195 PF06271 AFR_17195 AFR_17200 PF10825 AFR_17200 AFR_17205 PF01594 AFR_17205 AFR_17210 PF13443 Cro/C1-type HTH DNA-binding domain AFR_17215 PF11188 AFR_17215 AFR_17220 PF03358 NADPH-dependent FMN reductase AFR_17225 PF00072 Response regulator receiver domain AFR_17230 PF01590 GAF domain AFR_17230 PF07228 Stage II sporulation protein E (SpoIIE) AFR_17240 PF04616 Glycosyl hydrolases family 43 AFR_17245 PF13581 Histidine kinase-like ATPase domain AFR_17245 PF14417 AFR_17245 AFR_17260 PF03069 Acetamidase/Formamidase family AFR_17265 PF01925 AFR_17265 AFR_17290 PF12697 Alpha/beta hydrolase family AFR_17295 PF00486 Transcriptional regulatory protein, C terminal AFR_17295 PF03704 Bacterial transcriptional activator domain AFR_17305 PF01740 STAS domain AFR_17310 PF12833 Helix-turn-helix domain AFR_17310 PF14525 AFR_17310 AFR_17315 PF02687 AFR_17315 AFR_17320 PF00005 ABC transporter AFR_17325 PF01471 Putative peptidoglycan binding domain AFR_17335 PF00072 Response regulator receiver domain AFR_17335 PF00486 Transcriptional regulatory protein, C terminal AFR_17340 PF00512 His Kinase A (phospho-acceptor) domain AFR_17340 PF00672 HAMP domain AFR_17340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_17345 PF00563 EAL domain AFR_17345 PF00990 GGDEF domain AFR_17350 PF00534 Glycosyl transferases group 1 AFR_17350 PF13439 Glycosyltransferase Family 4 AFR_17355 PF00535 Glycosyl transferase family 2 AFR_17360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_17360 PF08635 AFR_17360 AFR_17365 PF00107 Zinc-binding dehydrogenase AFR_17370 PF00990 GGDEF domain AFR_17375 PF01757 AFR_17375 AFR_17380 PF00563 EAL domain AFR_17380 PF00990 GGDEF domain AFR_17385 PF04248 Domain of unknown function (DUF427) AFR_17395 PF04542 Sigma-70 region 2 AFR_17405 PF00082 Subtilase family AFR_17410 PF12770 AFR_17410 AFR_17410 PF13424 Tetratricopeptide repeat AFR_17420 PF13420 Acetyltransferase (GNAT) domain AFR_17430 PF00583 Acetyltransferase (GNAT) family AFR_17435 PF01847 von Hippel-Lindau disease tumour suppressor protein AFR_17440 PF05787 Bacterial protein of unknown function (DUF839) AFR_17450 PF01965 DJ-1/PfpI family AFR_17450 PF12833 Helix-turn-helix domain AFR_17455 PF01965 DJ-1/PfpI family AFR_17465 PF13581 Histidine kinase-like ATPase domain AFR_17470 PF13466 STAS domain AFR_17475 PF00266 Aminotransferase class-V AFR_17480 PF12833 Helix-turn-helix domain AFR_17480 PF12852 Cupin AFR_17485 PF00106 short chain dehydrogenase AFR_17495 PF01028 Eukaryotic DNA topoisomerase I, catalytic core AFR_17510 PF03358 NADPH-dependent FMN reductase AFR_17515 PF04539 Sigma-70 region 3 AFR_17515 PF04542 Sigma-70 region 2 AFR_17515 PF04545 Sigma-70, region 4 AFR_17525 PF00356 Bacterial regulatory proteins, lacI family AFR_17525 PF13377 Periplasmic binding protein-like domain AFR_17530 PF00069 Protein kinase domain AFR_17535 PF01925 AFR_17535 AFR_17540 PF00652 Ricin-type beta-trefoil lectin domain AFR_17545 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_17550 PF00561 alpha/beta hydrolase fold AFR_17555 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AFR_17560 PF01381 Helix-turn-helix AFR_17560 PF07883 Cupin domain AFR_17565 PF01095 Pectinesterase AFR_17570 PF00682 HMGL-like AFR_17575 PF00392 Bacterial regulatory proteins, gntR family AFR_17575 PF07729 FCD domain AFR_17580 PF02515 CoA-transferase family III AFR_17585 PF01968 Hydantoinase/oxoprolinase AFR_17585 PF05378 AFR_17585 AFR_17590 PF02538 AFR_17590 AFR_17595 PF00857 Isochorismatase family AFR_17600 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_17600 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_17600 PF03422 Carbohydrate binding module (family 6) AFR_17600 PF14310 Fibronectin type III-like domain AFR_17605 PF00480 ROK family AFR_17605 PF09339 IclR helix-turn-helix domain AFR_17610 PF01547 Bacterial extracellular solute-binding protein AFR_17615 PF00528 Binding-protein-dependent transport system inner membrane component AFR_17620 PF00528 Binding-protein-dependent transport system inner membrane component AFR_17625 PF14498 Glycosyl hydrolase family 65, N-terminal domain AFR_17630 PF02449 Beta-galactosidase AFR_17630 PF08532 Beta-galactosidase trimerisation domain AFR_17630 PF08533 Beta-galactosidase C-terminal domain AFR_17640 PF13185 GAF domain AFR_17645 PF00331 Glycosyl hydrolase family 10 AFR_17645 PF00553 Cellulose binding domain AFR_17645 PF02018 Carbohydrate binding domain AFR_17650 PF00072 Response regulator receiver domain AFR_17650 PF00196 Bacterial regulatory proteins, luxR family AFR_17655 PF07730 Histidine kinase AFR_17670 PF00656 Caspase domain AFR_17675 PF01367 5'-3' exonuclease, C-terminal SAM fold AFR_17675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFR_17680 PF08279 HTH domain AFR_17680 PF13280 AFR_17680 AFR_17685 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_17690 PF00202 Aminotransferase class-III AFR_17700 PF03576 Peptidase family S58 AFR_17710 PF04542 Sigma-70 region 2 AFR_17710 PF08281 Sigma-70, region 4 AFR_17715 PF00331 Glycosyl hydrolase family 10 AFR_17715 PF01522 Polysaccharide deacetylase AFR_17720 PF07969 Amidohydrolase family AFR_17730 PF01569 PAP2 superfamily AFR_17745 PF00072 Response regulator receiver domain AFR_17750 PF02016 LD-carboxypeptidase AFR_17755 PF00932 Lamin Tail Domain AFR_17760 PF00149 Calcineurin-like phosphoesterase AFR_17765 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_17770 PF13466 STAS domain AFR_17775 PF01872 RibD C-terminal domain AFR_17780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_17780 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_17785 PF13560 Helix-turn-helix domain AFR_17795 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_17800 PF00563 EAL domain AFR_17800 PF00990 GGDEF domain AFR_17805 PF00743 Flavin-binding monooxygenase-like AFR_17810 PF07859 alpha/beta hydrolase fold AFR_17815 PF03777 AFR_17815 AFR_17825 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AFR_17830 PF05988 AFR_17830 AFR_17835 PF00092 von Willebrand factor type A domain AFR_17835 PF13531 Bacterial extracellular solute-binding protein AFR_17840 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFR_17850 PF13649 Methyltransferase domain AFR_17855 PF00892 EamA-like transporter family AFR_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_17860 PF03466 LysR substrate binding domain AFR_17865 PF04616 Glycosyl hydrolases family 43 AFR_17865 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_17870 PF04616 Glycosyl hydrolases family 43 AFR_17875 PF00544 Pectate lyase AFR_17880 PF00553 Cellulose binding domain AFR_17880 PF03067 Chitin binding domain AFR_17885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_17890 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) AFR_17895 PF06197 AFR_17895 AFR_17900 PF01553 Acyltransferase AFR_17905 PF00534 Glycosyl transferases group 1 AFR_17905 PF13439 Glycosyltransferase Family 4 AFR_17910 PF00392 Bacterial regulatory proteins, gntR family AFR_17910 PF07729 FCD domain AFR_17915 PF01565 FAD binding domain AFR_17915 PF02754 AFR_17915 AFR_17915 PF02913 FAD linked oxidases, C-terminal domain AFR_17915 PF13183 4Fe-4S dicluster domain AFR_17920 PF01638 HxlR-like helix-turn-helix AFR_17925 PF02525 Flavodoxin-like fold AFR_17930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_17935 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_17940 PF00296 Luciferase-like monooxygenase AFR_17945 PF00106 short chain dehydrogenase AFR_17950 PF13560 Helix-turn-helix domain AFR_17955 PF00534 Glycosyl transferases group 1 AFR_17960 PF11380 AFR_17960 AFR_17960 PF17101 AFR_17960 AFR_17960 PF17102 AFR_17960 AFR_17960 PF17103 AFR_17960 AFR_17965 PF11380 AFR_17965 AFR_17965 PF17101 AFR_17965 AFR_17965 PF17102 AFR_17965 AFR_17965 PF17103 AFR_17965 AFR_17975 PF09860 AFR_17975 AFR_17980 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_17980 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_17980 PF14310 Fibronectin type III-like domain AFR_17985 PF01547 Bacterial extracellular solute-binding protein AFR_17990 PF00528 Binding-protein-dependent transport system inner membrane component AFR_17995 PF00528 Binding-protein-dependent transport system inner membrane component AFR_18000 PF00356 Bacterial regulatory proteins, lacI family AFR_18000 PF13377 Periplasmic binding protein-like domain AFR_18005 PF00331 Glycosyl hydrolase family 10 AFR_18010 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_18015 PF15979 AFR_18015 AFR_18020 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_18025 PF01965 DJ-1/PfpI family AFR_18030 PF00331 Glycosyl hydrolase family 10 AFR_18030 PF00553 Cellulose binding domain AFR_18035 PF00553 Cellulose binding domain AFR_18035 PF10503 Esterase PHB depolymerase AFR_18040 PF00092 von Willebrand factor type A domain AFR_18040 PF13531 Bacterial extracellular solute-binding protein AFR_18045 PF00533 BRCA1 C Terminus (BRCT) domain AFR_18045 PF01653 NAD-dependent DNA ligase adenylation domain AFR_18045 PF03120 NAD-dependent DNA ligase OB-fold domain AFR_18045 PF12826 Helix-hairpin-helix motif AFR_18045 PF14520 Helix-hairpin-helix domain AFR_18050 PF01872 RibD C-terminal domain AFR_18060 PF12849 PBP superfamily domain AFR_18065 PF00248 Aldo/keto reductase family AFR_18070 PF00440 Bacterial regulatory proteins, tetR family AFR_18070 PF13977 Bacterial transcriptional repressor AFR_18075 PF01061 AFR_18075 AFR_18080 PF00005 ABC transporter AFR_18085 PF00440 Bacterial regulatory proteins, tetR family AFR_18085 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_18090 PF05576 PS-10 peptidase S37 AFR_18095 PF00754 F5/8 type C domain AFR_18100 PF00248 Aldo/keto reductase family AFR_18110 PF00069 Protein kinase domain AFR_18115 PF13460 NADH(P)-binding AFR_18120 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_18125 PF00440 Bacterial regulatory proteins, tetR family AFR_18125 PF16925 AFR_18125 AFR_18135 PF00082 Subtilase family AFR_18135 PF09286 Pro-kumamolisin, activation domain AFR_18140 PF00563 EAL domain AFR_18140 PF00990 GGDEF domain AFR_18145 PF12146 Putative lysophospholipase AFR_18150 PF13641 Glycosyltransferase like family 2 AFR_18155 PF13231 AFR_18155 AFR_18160 PF09118 Domain of unknown function (DUF1929) AFR_18170 PF01593 Flavin containing amine oxidoreductase AFR_18185 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFR_18185 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_18190 PF00144 Beta-lactamase AFR_18200 PF05787 Bacterial protein of unknown function (DUF839) AFR_18205 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFR_18210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_18210 PF12729 AFR_18210 AFR_18215 PF00005 ABC transporter AFR_18215 PF03459 TOBE domain AFR_18220 PF00528 Binding-protein-dependent transport system inner membrane component AFR_18225 PF00528 Binding-protein-dependent transport system inner membrane component AFR_18230 PF13416 Bacterial extracellular solute-binding protein AFR_18245 PF01433 Peptidase family M1 AFR_18245 PF05547 AFR_18245 AFR_18250 PF03435 Saccharopine dehydrogenase AFR_18255 PF00990 GGDEF domain AFR_18260 PF00106 short chain dehydrogenase AFR_18270 PF01757 AFR_18270 AFR_18275 PF17032 AFR_18275 AFR_18280 PF00356 Bacterial regulatory proteins, lacI family AFR_18280 PF13377 Periplasmic binding protein-like domain AFR_18285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_18290 PF06187 Protein of unknown function (DUF993) AFR_18295 PF01261 Xylose isomerase-like TIM barrel AFR_18305 PF00356 Bacterial regulatory proteins, lacI family AFR_18305 PF13377 Periplasmic binding protein-like domain AFR_18310 PF13458 Periplasmic binding protein AFR_18315 PF02653 AFR_18315 AFR_18320 PF02653 AFR_18320 AFR_18325 PF00005 ABC transporter AFR_18325 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFR_18330 PF00005 ABC transporter AFR_18335 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_18340 PF07995 Glucose / Sorbosone dehydrogenase AFR_18345 PF03572 Peptidase family S41 AFR_18345 PF11918 AFR_18345 AFR_18365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_18375 PF00005 ABC transporter AFR_18375 PF00664 ABC transporter transmembrane region AFR_18380 PF00005 ABC transporter AFR_18380 PF00664 ABC transporter transmembrane region AFR_18385 PF00491 Arginase family AFR_18395 PF04738 AFR_18395 AFR_18395 PF14028 AFR_18395 AFR_18400 PF00486 Transcriptional regulatory protein, C terminal AFR_18400 PF03704 Bacterial transcriptional activator domain AFR_18410 PF07819 PGAP1-like protein AFR_18415 PF02065 Melibiase AFR_18415 PF16874 AFR_18415 AFR_18415 PF16875 AFR_18415 AFR_18420 PF03745 Domain of unknown function (DUF309) AFR_18425 PF00355 Rieske [2Fe-2S] domain AFR_18425 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AFR_18430 PF01266 FAD dependent oxidoreductase AFR_18435 PF01266 FAD dependent oxidoreductase AFR_18435 PF01571 Aminomethyltransferase folate-binding domain AFR_18435 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFR_18435 PF16350 AFR_18435 AFR_18440 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFR_18445 PF00528 Binding-protein-dependent transport system inner membrane component AFR_18450 PF00005 ABC transporter AFR_18455 PF00732 GMC oxidoreductase AFR_18455 PF05199 GMC oxidoreductase AFR_18460 PF09335 AFR_18460 AFR_18470 PF00005 ABC transporter AFR_18470 PF13732 AFR_18470 AFR_18475 PF00291 Pyridoxal-phosphate dependent enzyme AFR_18480 PF00206 Lyase AFR_18480 PF14698 Argininosuccinate lyase C-terminal AFR_18485 PF13535 ATP-grasp domain AFR_18490 PF00501 AMP-binding enzyme AFR_18490 PF00550 Phosphopantetheine attachment site AFR_18490 PF00975 Thioesterase domain AFR_18490 PF13193 AMP-binding enzyme C-terminal domain AFR_18495 PF00288 GHMP kinases N terminal domain AFR_18495 PF08544 GHMP kinases C terminal AFR_18500 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AFR_18505 PF01061 AFR_18505 AFR_18510 PF06368 Methylaspartate mutase E chain (MutE) AFR_18515 PF02310 B12 binding domain AFR_18520 PF00501 AMP-binding enzyme AFR_18525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_18525 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_18535 PF00550 Phosphopantetheine attachment site AFR_18540 PF00501 AMP-binding enzyme AFR_18540 PF00550 Phosphopantetheine attachment site AFR_18540 PF00668 Condensation domain AFR_18540 PF13193 AMP-binding enzyme C-terminal domain AFR_18545 PF00501 AMP-binding enzyme AFR_18545 PF00550 Phosphopantetheine attachment site AFR_18545 PF00668 Condensation domain AFR_18545 PF13193 AMP-binding enzyme C-terminal domain AFR_18550 PF00501 AMP-binding enzyme AFR_18550 PF00550 Phosphopantetheine attachment site AFR_18550 PF00668 Condensation domain AFR_18550 PF00975 Thioesterase domain AFR_18550 PF13193 AMP-binding enzyme C-terminal domain AFR_18555 PF03621 MbtH-like protein AFR_18560 PF12697 Alpha/beta hydrolase family AFR_18565 PF03176 MMPL family AFR_18570 PF02423 Ornithine cyclodeaminase/mu-crystallin family AFR_18575 PF00072 Response regulator receiver domain AFR_18575 PF00196 Bacterial regulatory proteins, luxR family AFR_18580 PF07730 Histidine kinase AFR_18585 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AFR_18590 PF07690 Major Facilitator Superfamily AFR_18595 PF00440 Bacterial regulatory proteins, tetR family AFR_18595 PF16859 AFR_18595 AFR_18600 PF00291 Pyridoxal-phosphate dependent enzyme AFR_18610 PF07690 Major Facilitator Superfamily AFR_18615 PF13577 SnoaL-like domain AFR_18620 PF00990 GGDEF domain AFR_18625 PF08818 Domain of unknown function (DU1801) AFR_18630 PF00011 Hsp20/alpha crystallin family AFR_18640 PF00291 Pyridoxal-phosphate dependent enzyme AFR_18650 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_18655 PF13564 AFR_18655 AFR_18665 PF00486 Transcriptional regulatory protein, C terminal AFR_18665 PF02602 Uroporphyrinogen-III synthase HemD AFR_18670 PF01903 CbiX AFR_18685 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFR_18685 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFR_18685 PF04324 BFD-like [2Fe-2S] binding domain AFR_18685 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_18690 PF00355 Rieske [2Fe-2S] domain AFR_18695 PF07690 Major Facilitator Superfamily AFR_18710 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) AFR_18715 PF00089 Trypsin AFR_18720 PF00561 alpha/beta hydrolase fold AFR_18725 PF00106 short chain dehydrogenase AFR_18730 PF00743 Flavin-binding monooxygenase-like AFR_18730 PF13450 NAD(P)-binding Rossmann-like domain AFR_18735 PF12625 AFR_18735 AFR_18735 PF12833 Helix-turn-helix domain AFR_18740 PF16170 AFR_18740 AFR_18745 PF00440 Bacterial regulatory proteins, tetR family AFR_18750 PF11583 P-aminobenzoate N-oxygenase AurF AFR_18755 PF08713 DNA alkylation repair enzyme AFR_18760 PF01323 DSBA-like thioredoxin domain AFR_18780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_18780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_18790 PF07883 Cupin domain AFR_18795 PF01297 Periplasmic solute binding protein family AFR_18800 PF00005 ABC transporter AFR_18805 PF00950 AFR_18805 AFR_18810 PF00950 AFR_18810 AFR_18815 PF01022 Bacterial regulatory protein, arsR family AFR_18825 PF02156 Glycosyl hydrolase family 26 AFR_18830 PF00652 Ricin-type beta-trefoil lectin domain AFR_18850 PF01546 Peptidase family M20/M25/M40 AFR_18850 PF07687 Peptidase dimerisation domain AFR_18860 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_18860 PF13378 Enolase C-terminal domain-like AFR_18865 PF01476 LysM domain AFR_18865 PF06737 Transglycosylase-like domain AFR_18870 PF04434 AFR_18870 AFR_18880 PF02449 Beta-galactosidase AFR_18880 PF08532 Beta-galactosidase trimerisation domain AFR_18885 PF00149 Calcineurin-like phosphoesterase AFR_18890 PF07690 Major Facilitator Superfamily AFR_18895 PF07676 WD40-like Beta Propeller Repeat AFR_18900 PF04542 Sigma-70 region 2 AFR_18900 PF08281 Sigma-70, region 4 AFR_18910 PF00990 GGDEF domain AFR_18915 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_18915 PF00553 Cellulose binding domain AFR_18920 PF00553 Cellulose binding domain AFR_18925 PF00553 Cellulose binding domain AFR_18925 PF02011 Glycosyl hydrolase family 48 AFR_18930 PF00553 Cellulose binding domain AFR_18930 PF03067 Chitin binding domain AFR_18935 PF00356 Bacterial regulatory proteins, lacI family AFR_18935 PF13377 Periplasmic binding protein-like domain AFR_18940 PF13407 Periplasmic binding protein domain AFR_18945 PF00005 ABC transporter AFR_18950 PF02653 AFR_18950 AFR_18955 PF02653 AFR_18955 AFR_18965 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFR_18970 PF00296 Luciferase-like monooxygenase AFR_18975 PF05977 Transmembrane secretion effector AFR_18980 PF07690 Major Facilitator Superfamily AFR_18985 PF00440 Bacterial regulatory proteins, tetR family AFR_18990 PF04978 Protein of unknown function (DUF664) AFR_18995 PF01197 Ribosomal protein L31 AFR_19000 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFR_19000 PF07683 Cobalamin synthesis protein cobW C-terminal domain AFR_19005 PF09967 AFR_19005 AFR_19005 PF13203 AFR_19005 AFR_19010 PF07728 AAA domain (dynein-related subfamily) AFR_19015 PF13516 Leucine Rich repeat AFR_19020 PF00106 short chain dehydrogenase AFR_19020 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_19035 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_19035 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFR_19040 PF00941 FAD binding domain in molybdopterin dehydrogenase AFR_19040 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFR_19045 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_19045 PF01799 [2Fe-2S] binding domain AFR_19050 PF01613 Flavin reductase like domain AFR_19060 PF00440 Bacterial regulatory proteins, tetR family AFR_19065 PF12796 Ankyrin repeats (3 copies) AFR_19080 PF00149 Calcineurin-like phosphoesterase AFR_19085 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFR_19085 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFR_19095 PF01965 DJ-1/PfpI family AFR_19095 PF12833 Helix-turn-helix domain AFR_19105 PF00149 Calcineurin-like phosphoesterase AFR_19115 PF08281 Sigma-70, region 4 AFR_19120 PF00563 EAL domain AFR_19120 PF00990 GGDEF domain AFR_19125 PF04672 S-adenosyl methyltransferase AFR_19135 PF00296 Luciferase-like monooxygenase AFR_19140 PF06719 AFR_19140 AFR_19140 PF12833 Helix-turn-helix domain AFR_19145 PF00248 Aldo/keto reductase family AFR_19155 PF01179 Copper amine oxidase, enzyme domain AFR_19160 PF03713 Domain of unknown function (DUF305) AFR_19165 PF00563 EAL domain AFR_19165 PF00990 GGDEF domain AFR_19165 PF08448 PAS fold AFR_19175 PF04193 PQ loop repeat AFR_19180 PF00962 Adenosine/AMP deaminase AFR_19185 PF01313 AFR_19185 AFR_19195 PF03483 B3/4 domain AFR_19200 PF00892 EamA-like transporter family AFR_19205 PF00155 Aminotransferase class I and II AFR_19205 PF00392 Bacterial regulatory proteins, gntR family AFR_19225 PF10646 AFR_19225 AFR_19230 PF00512 His Kinase A (phospho-acceptor) domain AFR_19230 PF00672 HAMP domain AFR_19230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19235 PF00072 Response regulator receiver domain AFR_19235 PF00486 Transcriptional regulatory protein, C terminal AFR_19240 PF13466 STAS domain AFR_19245 PF01740 STAS domain AFR_19250 PF00990 GGDEF domain AFR_19250 PF13185 GAF domain AFR_19255 PF01614 Bacterial transcriptional regulator AFR_19255 PF09339 IclR helix-turn-helix domain AFR_19260 PF02627 Carboxymuconolactone decarboxylase family AFR_19265 PF00561 alpha/beta hydrolase fold AFR_19270 PF00206 Lyase AFR_19275 PF00775 Dioxygenase AFR_19280 PF00775 Dioxygenase AFR_19280 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AFR_19285 PF01144 Coenzyme A transferase AFR_19290 PF01144 Coenzyme A transferase AFR_19295 PF01494 FAD binding domain AFR_19300 PF09084 NMT1/THI5 like AFR_19305 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19310 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19315 PF00005 ABC transporter AFR_19320 PF00171 Aldehyde dehydrogenase family AFR_19325 PF00561 alpha/beta hydrolase fold AFR_19330 PF08279 HTH domain AFR_19330 PF13280 AFR_19330 AFR_19335 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19340 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19345 PF01547 Bacterial extracellular solute-binding protein AFR_19350 PF05592 Bacterial alpha-L-rhamnosidase AFR_19350 PF08531 Alpha-L-rhamnosidase N-terminal domain AFR_19350 PF17389 AFR_19350 AFR_19350 PF17390 AFR_19350 AFR_19355 PF02311 AraC-like ligand binding domain AFR_19355 PF12833 Helix-turn-helix domain AFR_19360 PF13563 2'-5' RNA ligase superfamily AFR_19365 PF13302 Acetyltransferase (GNAT) domain AFR_19375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_19380 PF00128 Alpha amylase, catalytic domain AFR_19380 PF00686 Starch binding domain AFR_19380 PF02806 Alpha amylase, C-terminal all-beta domain AFR_19385 PF00356 Bacterial regulatory proteins, lacI family AFR_19385 PF13377 Periplasmic binding protein-like domain AFR_19390 PF13416 Bacterial extracellular solute-binding protein AFR_19395 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19395 PF16296 AFR_19395 AFR_19400 PF00528 Binding-protein-dependent transport system inner membrane component AFR_19405 PF08240 Alcohol dehydrogenase GroES-like domain AFR_19405 PF13602 Zinc-binding dehydrogenase AFR_19415 PF03551 Transcriptional regulator PadR-like family AFR_19420 PF13977 Bacterial transcriptional repressor AFR_19425 PF12680 SnoaL-like domain AFR_19430 PF04075 Domain of unknown function (DUF385) AFR_19435 PF07690 Major Facilitator Superfamily AFR_19440 PF12802 MarR family AFR_19445 PF00248 Aldo/keto reductase family AFR_19450 PF00854 POT family AFR_19455 PF06965 Na+/H+ antiporter 1 AFR_19455 PF13462 Thioredoxin AFR_19460 PF00144 Beta-lactamase AFR_19465 PF04892 AFR_19465 AFR_19470 PF00072 Response regulator receiver domain AFR_19470 PF00486 Transcriptional regulatory protein, C terminal AFR_19475 PF00512 His Kinase A (phospho-acceptor) domain AFR_19475 PF00672 HAMP domain AFR_19475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19490 PF01969 Protein of unknown function DUF111 AFR_19495 PF00731 AIR carboxylase AFR_19500 PF00733 Asparagine synthase AFR_19505 PF00356 Bacterial regulatory proteins, lacI family AFR_19505 PF13377 Periplasmic binding protein-like domain AFR_19515 PF00440 Bacterial regulatory proteins, tetR family AFR_19520 PF00108 Thiolase, N-terminal domain AFR_19520 PF02803 Thiolase, C-terminal domain AFR_19525 PF00005 ABC transporter AFR_19530 PF02361 Cobalt transport protein AFR_19535 PF13190 AFR_19535 AFR_19540 PF01891 Cobalt uptake substrate-specific transmembrane region AFR_19555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFR_19565 PF01668 SmpB protein AFR_19570 PF03992 Antibiotic biosynthesis monooxygenase AFR_19575 PF00553 Cellulose binding domain AFR_19575 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_19580 PF00553 Cellulose binding domain AFR_19590 PF00440 Bacterial regulatory proteins, tetR family AFR_19590 PF13977 Bacterial transcriptional repressor AFR_19595 PF02754 AFR_19595 AFR_19595 PF13183 4Fe-4S dicluster domain AFR_19600 PF01565 FAD binding domain AFR_19605 PF01565 FAD binding domain AFR_19605 PF02913 FAD linked oxidases, C-terminal domain AFR_19610 PF02128 Fungalysin metallopeptidase (M36) AFR_19610 PF03413 Peptidase propeptide and YPEB domain AFR_19620 PF00107 Zinc-binding dehydrogenase AFR_19620 PF08240 Alcohol dehydrogenase GroES-like domain AFR_19635 PF01447 Thermolysin metallopeptidase, catalytic domain AFR_19635 PF02868 Thermolysin metallopeptidase, alpha-helical domain AFR_19635 PF03413 Peptidase propeptide and YPEB domain AFR_19635 PF07504 Fungalysin/Thermolysin Propeptide Motif AFR_19640 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFR_19640 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFR_19655 PF03795 YCII-related domain AFR_19660 PF04542 Sigma-70 region 2 AFR_19660 PF08281 Sigma-70, region 4 AFR_19665 PF13409 Glutathione S-transferase, N-terminal domain AFR_19665 PF13410 Glutathione S-transferase, C-terminal domain AFR_19670 PF00563 EAL domain AFR_19670 PF08668 HDOD domain AFR_19675 PF13649 Methyltransferase domain AFR_19680 PF13474 SnoaL-like domain AFR_19685 PF13460 NADH(P)-binding AFR_19690 PF00270 DEAD/DEAH box helicase AFR_19690 PF00271 Helicase conserved C-terminal domain AFR_19690 PF00570 HRDC domain AFR_19690 PF09382 RQC domain AFR_19690 PF16124 AFR_19690 AFR_19695 PF09594 AFR_19695 AFR_19705 PF00561 alpha/beta hydrolase fold AFR_19710 PF01740 STAS domain AFR_19710 PF07228 Stage II sporulation protein E (SpoIIE) AFR_19710 PF08448 PAS fold AFR_19710 PF13581 Histidine kinase-like ATPase domain AFR_19715 PF00925 GTP cyclohydrolase II AFR_19720 PF01872 RibD C-terminal domain AFR_19725 PF03706 AFR_19725 AFR_19730 PF13649 Methyltransferase domain AFR_19735 PF00534 Glycosyl transferases group 1 AFR_19740 PF01242 6-pyruvoyl tetrahydropterin synthase AFR_19750 PF01066 CDP-alcohol phosphatidyltransferase AFR_19755 PF01497 Periplasmic binding protein AFR_19760 PF00561 alpha/beta hydrolase fold AFR_19760 PF08386 TAP-like protein AFR_19765 PF00756 Putative esterase AFR_19775 PF00860 Permease family AFR_19785 PF13411 MerR HTH family regulatory protein AFR_19790 PF13673 Acetyltransferase (GNAT) domain AFR_19795 PF08450 SMP-30/Gluconolaconase/LRE-like region AFR_19800 PF04266 ASCH domain AFR_19810 PF13302 Acetyltransferase (GNAT) domain AFR_19815 PF00175 Oxidoreductase NAD-binding domain AFR_19815 PF01794 AFR_19815 AFR_19820 PF00183 Hsp90 protein AFR_19820 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19825 PF00440 Bacterial regulatory proteins, tetR family AFR_19825 PF13305 WHG domain AFR_19830 PF00107 Zinc-binding dehydrogenase AFR_19830 PF16884 AFR_19830 AFR_19835 PF12695 Alpha/beta hydrolase family AFR_19840 PF01047 MarR family AFR_19845 PF07690 Major Facilitator Superfamily AFR_19865 PF00294 pfkB family carbohydrate kinase AFR_19875 PF04909 Amidohydrolase AFR_19880 PF07690 Major Facilitator Superfamily AFR_19885 PF00440 Bacterial regulatory proteins, tetR family AFR_19890 PF00440 Bacterial regulatory proteins, tetR family AFR_19895 PF00106 short chain dehydrogenase AFR_19900 PF02447 AFR_19900 AFR_19905 PF02687 AFR_19905 AFR_19910 PF00005 ABC transporter AFR_19920 PF07730 Histidine kinase AFR_19920 PF13796 AFR_19920 AFR_19925 PF00072 Response regulator receiver domain AFR_19925 PF00196 Bacterial regulatory proteins, luxR family AFR_19930 PF00296 Luciferase-like monooxygenase AFR_19940 PF12740 Chlorophyllase enzyme AFR_19945 PF00905 Penicillin binding protein transpeptidase domain AFR_19945 PF00912 Transglycosylase AFR_19950 PF00072 Response regulator receiver domain AFR_19955 PF00989 PAS fold AFR_19955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_19955 PF17203 AFR_19955 AFR_19960 PF00375 Sodium:dicarboxylate symporter family AFR_19970 PF00356 Bacterial regulatory proteins, lacI family AFR_19970 PF13377 Periplasmic binding protein-like domain AFR_19975 PF04734 Neutral/alkaline non-lysosomal ceramidase AFR_19975 PF17048 AFR_19975 AFR_19980 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_19990 PF04542 Sigma-70 region 2 AFR_19990 PF08281 Sigma-70, region 4 AFR_19995 PF00754 F5/8 type C domain AFR_20000 PF00916 AFR_20000 AFR_20000 PF01740 STAS domain AFR_20005 PF13411 MerR HTH family regulatory protein AFR_20010 PF07690 Major Facilitator Superfamily AFR_20015 PF00440 Bacterial regulatory proteins, tetR family AFR_20020 PF04542 Sigma-70 region 2 AFR_20020 PF08281 Sigma-70, region 4 AFR_20030 PF12224 AFR_20030 AFR_20035 PF00106 short chain dehydrogenase AFR_20040 PF00809 Pterin binding enzyme AFR_20045 PF00005 ABC transporter AFR_20045 PF00664 ABC transporter transmembrane region AFR_20050 PF00005 ABC transporter AFR_20050 PF00664 ABC transporter transmembrane region AFR_20055 PF07690 Major Facilitator Superfamily AFR_20060 PF00174 Oxidoreductase molybdopterin binding domain AFR_20060 PF03404 Mo-co oxidoreductase dimerisation domain AFR_20070 PF07332 AFR_20070 AFR_20075 PF12277 AFR_20075 AFR_20080 PF00296 Luciferase-like monooxygenase AFR_20090 PF06150 ChaB AFR_20090 PF07498 Rho termination factor, N-terminal domain AFR_20095 PF07883 Cupin domain AFR_20095 PF13560 Helix-turn-helix domain AFR_20100 PF13508 Acetyltransferase (GNAT) domain AFR_20105 PF00563 EAL domain AFR_20105 PF00990 GGDEF domain AFR_20110 PF13419 Haloacid dehalogenase-like hydrolase AFR_20120 PF03583 Secretory lipase AFR_20130 PF00069 Protein kinase domain AFR_20135 PF00005 ABC transporter AFR_20135 PF00664 ABC transporter transmembrane region AFR_20140 PF02322 AFR_20140 AFR_20145 PF01654 AFR_20145 AFR_20150 PF03965 Penicillinase repressor AFR_20155 PF01435 Peptidase family M48 AFR_20160 PF00877 NlpC/P60 family AFR_20165 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AFR_20170 PF13463 Winged helix DNA-binding domain AFR_20175 PF06441 Epoxide hydrolase N terminus AFR_20180 PF00990 GGDEF domain AFR_20180 PF08447 PAS fold AFR_20185 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_20190 PF11706 CGNR zinc finger AFR_20195 PF00561 alpha/beta hydrolase fold AFR_20200 PF00004 ATPase family associated with various cellular activities (AAA) AFR_20200 PF14561 Tetratricopeptide repeat AFR_20205 PF13432 Tetratricopeptide repeat AFR_20210 PF07907 AFR_20210 AFR_20215 PF01841 Transglutaminase-like superfamily AFR_20235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_20235 PF03466 LysR substrate binding domain AFR_20240 PF01965 DJ-1/PfpI family AFR_20250 PF00392 Bacterial regulatory proteins, gntR family AFR_20250 PF07702 UTRA domain AFR_20255 PF00290 Tryptophan synthase alpha chain AFR_20260 PF00291 Pyridoxal-phosphate dependent enzyme AFR_20265 PF09037 Stf0 sulphotransferase AFR_20270 PF05117 AFR_20270 AFR_20275 PF02861 Clp amino terminal domain AFR_20280 PF00072 Response regulator receiver domain AFR_20280 PF00196 Bacterial regulatory proteins, luxR family AFR_20285 PF07730 Histidine kinase AFR_20290 PF00561 alpha/beta hydrolase fold AFR_20295 PF01638 HxlR-like helix-turn-helix AFR_20300 PF12730 AFR_20300 AFR_20305 PF00005 ABC transporter AFR_20315 PF00072 Response regulator receiver domain AFR_20315 PF00486 Transcriptional regulatory protein, C terminal AFR_20320 PF00512 His Kinase A (phospho-acceptor) domain AFR_20320 PF00672 HAMP domain AFR_20320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_20325 PF04250 AFR_20325 AFR_20330 PF03734 L,D-transpeptidase catalytic domain AFR_20335 PF13489 Methyltransferase domain AFR_20340 PF07987 Domain of unkown function (DUF1775) AFR_20345 PF01814 Hemerythrin HHE cation binding domain AFR_20350 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_20355 PF01022 Bacterial regulatory protein, arsR family AFR_20365 PF10041 AFR_20365 AFR_20375 PF00072 Response regulator receiver domain AFR_20375 PF00196 Bacterial regulatory proteins, luxR family AFR_20380 PF07730 Histidine kinase AFR_20385 PF02366 AFR_20385 AFR_20390 PF01261 Xylose isomerase-like TIM barrel AFR_20395 PF03060 Nitronate monooxygenase AFR_20400 PF13458 Periplasmic binding protein AFR_20405 PF00563 EAL domain AFR_20405 PF00990 GGDEF domain AFR_20410 PF00199 Catalase AFR_20410 PF06628 Catalase-related immune-responsive AFR_20415 PF12697 Alpha/beta hydrolase family AFR_20420 PF14606 GDSL-like Lipase/Acylhydrolase family AFR_20425 PF00005 ABC transporter AFR_20425 PF09383 NIL domain AFR_20430 PF00528 Binding-protein-dependent transport system inner membrane component AFR_20435 PF03180 NLPA lipoprotein AFR_20440 PF01047 MarR family AFR_20445 PF13564 AFR_20445 AFR_20450 PF00342 Phosphoglucose isomerase AFR_20455 PF06224 AFR_20455 AFR_20460 PF00704 Glycosyl hydrolases family 18 AFR_20465 PF01810 AFR_20465 AFR_20470 PF00296 Luciferase-like monooxygenase AFR_20475 PF03358 NADPH-dependent FMN reductase AFR_20480 PF00300 Histidine phosphatase superfamily (branch 1) AFR_20485 PF00440 Bacterial regulatory proteins, tetR family AFR_20490 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_20500 PF00480 ROK family AFR_20505 PF07690 Major Facilitator Superfamily AFR_20510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_20510 PF13378 Enolase C-terminal domain-like AFR_20515 PF00528 Binding-protein-dependent transport system inner membrane component AFR_20520 PF00528 Binding-protein-dependent transport system inner membrane component AFR_20525 PF00005 ABC transporter AFR_20525 PF08402 TOBE domain AFR_20530 PF13416 Bacterial extracellular solute-binding protein AFR_20535 PF00356 Bacterial regulatory proteins, lacI family AFR_20535 PF13377 Periplasmic binding protein-like domain AFR_20540 PF00356 Bacterial regulatory proteins, lacI family AFR_20540 PF13377 Periplasmic binding protein-like domain AFR_20560 PF13437 HlyD family secretion protein AFR_20560 PF13533 Biotin-lipoyl like AFR_20565 PF00072 Response regulator receiver domain AFR_20565 PF00486 Transcriptional regulatory protein, C terminal AFR_20570 PF00512 His Kinase A (phospho-acceptor) domain AFR_20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_20575 PF16576 AFR_20575 AFR_20580 PF00005 ABC transporter AFR_20585 PF02687 AFR_20585 AFR_20585 PF12704 MacB-like periplasmic core domain AFR_20595 PF13622 Thioesterase-like superfamily AFR_20600 PF00196 Bacterial regulatory proteins, luxR family AFR_20600 PF13191 AAA ATPase domain AFR_20605 PF01447 Thermolysin metallopeptidase, catalytic domain AFR_20605 PF01483 Proprotein convertase P-domain AFR_20605 PF02868 Thermolysin metallopeptidase, alpha-helical domain AFR_20605 PF07504 Fungalysin/Thermolysin Propeptide Motif AFR_20620 PF01329 Pterin 4 alpha carbinolamine dehydratase AFR_20625 PF03741 AFR_20625 AFR_20630 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_20635 PF07394 AFR_20635 AFR_20640 PF08811 AFR_20640 AFR_20645 PF05719 Golgi phosphoprotein 3 (GPP34) AFR_20650 PF13520 Amino acid permease AFR_20655 PF13508 Acetyltransferase (GNAT) domain AFR_20660 PF13649 Methyltransferase domain AFR_20670 PF00440 Bacterial regulatory proteins, tetR family AFR_20670 PF13977 Bacterial transcriptional repressor AFR_20680 PF00392 Bacterial regulatory proteins, gntR family AFR_20680 PF07702 UTRA domain AFR_20685 PF00294 pfkB family carbohydrate kinase AFR_20695 PF04962 KduI/IolB family AFR_20700 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_20700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_20700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_20705 PF00171 Aldehyde dehydrogenase family AFR_20710 PF01261 Xylose isomerase-like TIM barrel AFR_20715 PF13407 Periplasmic binding protein domain AFR_20720 PF02653 AFR_20720 AFR_20725 PF00005 ABC transporter AFR_20730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_20730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_20735 PF01261 Xylose isomerase-like TIM barrel AFR_20740 PF01261 Xylose isomerase-like TIM barrel AFR_20745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_20750 PF00356 Bacterial regulatory proteins, lacI family AFR_20750 PF13377 Periplasmic binding protein-like domain AFR_20755 PF00691 OmpA family AFR_20760 PF01261 Xylose isomerase-like TIM barrel AFR_20765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_20765 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_20770 PF00356 Bacterial regulatory proteins, lacI family AFR_20770 PF13377 Periplasmic binding protein-like domain AFR_20775 PF00501 AMP-binding enzyme AFR_20775 PF14535 AMP-binding enzyme C-terminal domain AFR_20780 PF00440 Bacterial regulatory proteins, tetR family AFR_20785 PF03061 Thioesterase superfamily AFR_20790 PF00171 Aldehyde dehydrogenase family AFR_20795 PF00108 Thiolase, N-terminal domain AFR_20795 PF02803 Thiolase, C-terminal domain AFR_20800 PF00378 Enoyl-CoA hydratase/isomerase family AFR_20805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFR_20805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFR_20810 PF05138 Phenylacetic acid catabolic protein AFR_20815 PF06243 Phenylacetic acid degradation B AFR_20820 PF05138 Phenylacetic acid catabolic protein AFR_20825 PF01883 Domain of unknown function DUF59 AFR_20830 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_20830 PF00175 Oxidoreductase NAD-binding domain AFR_20830 PF00970 Oxidoreductase FAD-binding domain AFR_20835 PF01083 Cutinase AFR_20840 PF12840 Helix-turn-helix domain AFR_20845 PF00248 Aldo/keto reductase family AFR_20850 PF00563 EAL domain AFR_20850 PF00989 PAS fold AFR_20850 PF00990 GGDEF domain AFR_20855 PF13649 Methyltransferase domain AFR_20875 PF04203 Sortase family AFR_20880 PF14344 AFR_20880 AFR_20885 PF04542 Sigma-70 region 2 AFR_20885 PF08281 Sigma-70, region 4 AFR_20890 PF10099 AFR_20890 AFR_20895 PF03176 MMPL family AFR_20900 PF12802 MarR family AFR_20905 PF00072 Response regulator receiver domain AFR_20905 PF00196 Bacterial regulatory proteins, luxR family AFR_20910 PF07730 Histidine kinase AFR_20915 PF00005 ABC transporter AFR_20930 PF00144 Beta-lactamase AFR_20935 PF13343 Bacterial extracellular solute-binding protein AFR_20945 PF00528 Binding-protein-dependent transport system inner membrane component AFR_20950 PF00005 ABC transporter AFR_20950 PF08402 TOBE domain AFR_20965 PF05977 Transmembrane secretion effector AFR_20980 PF00182 Chitinase class I AFR_20990 PF14224 AFR_20990 AFR_21000 PF12833 Helix-turn-helix domain AFR_21000 PF14525 AFR_21000 AFR_21020 PF00483 Nucleotidyl transferase AFR_21025 PF00534 Glycosyl transferases group 1 AFR_21025 PF13439 Glycosyltransferase Family 4 AFR_21030 PF01593 Flavin containing amine oxidoreductase AFR_21030 PF13450 NAD(P)-binding Rossmann-like domain AFR_21035 PF02638 AFR_21035 AFR_21040 PF00005 ABC transporter AFR_21045 PF02567 Phenazine biosynthesis-like protein AFR_21060 PF01066 CDP-alcohol phosphatidyltransferase AFR_21065 PF05949 Bacterial protein of unknown function (DUF881) AFR_21070 PF06947 AFR_21070 AFR_21075 PF05949 Bacterial protein of unknown function (DUF881) AFR_21080 PF01597 Glycine cleavage H-protein AFR_21085 PF00498 FHA domain AFR_21090 PF00376 MerR family regulatory protein AFR_21095 PF02577 Bifunctional nuclease AFR_21100 PF13411 MerR HTH family regulatory protein AFR_21105 PF00005 ABC transporter AFR_21110 PF13649 Methyltransferase domain AFR_21115 PF07228 Stage II sporulation protein E (SpoIIE) AFR_21120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_21120 PF03466 LysR substrate binding domain AFR_21125 PF00892 EamA-like transporter family AFR_21130 PF00313 'Cold-shock' DNA-binding domain AFR_21135 PF13649 Methyltransferase domain AFR_21140 PF01381 Helix-turn-helix AFR_21140 PF07883 Cupin domain AFR_21145 PF11350 AFR_21145 AFR_21150 PF00733 Asparagine synthase AFR_21150 PF13537 Glutamine amidotransferase domain AFR_21155 PF00072 Response regulator receiver domain AFR_21155 PF00486 Transcriptional regulatory protein, C terminal AFR_21160 PF00512 His Kinase A (phospho-acceptor) domain AFR_21160 PF00672 HAMP domain AFR_21160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_21165 PF00270 DEAD/DEAH box helicase AFR_21165 PF00271 Helicase conserved C-terminal domain AFR_21165 PF12029 AFR_21165 AFR_21170 PF08843 Nucleotidyl transferase of unknown function (DUF1814) AFR_21180 PF10127 AFR_21180 AFR_21185 PF10127 AFR_21185 AFR_21190 PF00248 Aldo/keto reductase family AFR_21195 PF02347 Glycine cleavage system P-protein AFR_21205 PF00425 chorismate binding enzyme AFR_21220 PF04542 Sigma-70 region 2 AFR_21220 PF08281 Sigma-70, region 4 AFR_21225 PF01327 Polypeptide deformylase AFR_21230 PF13649 Methyltransferase domain AFR_21235 PF00293 NUDIX domain AFR_21240 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_21240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_21245 PF04183 IucA / IucC family AFR_21245 PF06276 Ferric iron reductase FhuF-like transporter AFR_21250 PF04183 IucA / IucC family AFR_21250 PF06276 Ferric iron reductase FhuF-like transporter AFR_21255 PF01370 NAD dependent epimerase/dehydratase family AFR_21265 PF00005 ABC transporter AFR_21270 PF01061 AFR_21270 AFR_21275 PF07730 Histidine kinase AFR_21280 PF00072 Response regulator receiver domain AFR_21280 PF00196 Bacterial regulatory proteins, luxR family AFR_21285 PF04539 Sigma-70 region 3 AFR_21285 PF04542 Sigma-70 region 2 AFR_21285 PF04545 Sigma-70, region 4 AFR_21295 PF03551 Transcriptional regulator PadR-like family AFR_21300 PF00005 ABC transporter AFR_21305 PF00589 Phage integrase family AFR_21305 PF02899 Phage integrase, N-terminal SAM-like domain AFR_21310 PF02673 AFR_21310 AFR_21315 PF12294 AFR_21315 AFR_21325 PF00561 alpha/beta hydrolase fold AFR_21330 PF00440 Bacterial regulatory proteins, tetR family AFR_21330 PF13305 WHG domain AFR_21335 PF00067 Cytochrome P450 AFR_21340 PF06902 Divergent 4Fe-4S mono-cluster AFR_21355 PF00392 Bacterial regulatory proteins, gntR family AFR_21360 PF11700 AFR_21360 AFR_21375 PF00350 Dynamin family AFR_21385 PF00196 Bacterial regulatory proteins, luxR family AFR_21395 PF07398 AFR_21395 AFR_21395 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_21400 PF06353 AFR_21400 AFR_21410 PF04951 D-aminopeptidase AFR_21415 PF01553 Acyltransferase AFR_21435 PF00931 NB-ARC domain AFR_21440 PF01047 MarR family AFR_21445 PF00106 short chain dehydrogenase AFR_21450 PF00440 Bacterial regulatory proteins, tetR family AFR_21455 PF01636 Phosphotransferase enzyme family AFR_21455 PF08241 Methyltransferase domain AFR_21460 PF00440 Bacterial regulatory proteins, tetR family AFR_21465 PF12833 Helix-turn-helix domain AFR_21470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_21475 PF00589 Phage integrase family AFR_21475 PF02899 Phage integrase, N-terminal SAM-like domain AFR_21480 PF00561 alpha/beta hydrolase fold AFR_21485 PF02566 OsmC-like protein AFR_21490 PF01047 MarR family AFR_21495 PF13302 Acetyltransferase (GNAT) domain AFR_21500 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_21505 PF03928 Domain of unknown function (DUF336) AFR_21510 PF00009 Elongation factor Tu GTP binding domain AFR_21510 PF00679 Elongation factor G C-terminus AFR_21510 PF03764 Elongation factor G, domain IV AFR_21520 PF13302 Acetyltransferase (GNAT) domain AFR_21525 PF00296 Luciferase-like monooxygenase AFR_21540 PF10094 AFR_21540 AFR_21545 PF13672 Protein phosphatase 2C AFR_21550 PF00561 alpha/beta hydrolase fold AFR_21550 PF08386 TAP-like protein AFR_21555 PF07730 Histidine kinase AFR_21560 PF00072 Response regulator receiver domain AFR_21560 PF00196 Bacterial regulatory proteins, luxR family AFR_21565 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_21575 PF07730 Histidine kinase AFR_21580 PF00072 Response regulator receiver domain AFR_21580 PF00196 Bacterial regulatory proteins, luxR family AFR_21585 PF12787 AFR_21585 AFR_21590 PF08241 Methyltransferase domain AFR_21595 PF00561 alpha/beta hydrolase fold AFR_21600 PF01494 FAD binding domain AFR_21605 PF05139 Erythromycin esterase AFR_21610 PF00376 MerR family regulatory protein AFR_21610 PF13411 MerR HTH family regulatory protein AFR_21615 PF14534 Domain of unknown function (DUF4440) AFR_21620 PF13242 HAD-hyrolase-like AFR_21625 PF01738 Dienelactone hydrolase family AFR_21630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_21630 PF03466 LysR substrate binding domain AFR_21635 PF00701 Dihydrodipicolinate synthetase family AFR_21640 PF00144 Beta-lactamase AFR_21645 PF00563 EAL domain AFR_21645 PF00990 GGDEF domain AFR_21650 PF08495 AFR_21650 AFR_21650 PF10442 AFR_21650 AFR_21655 PF00893 Small Multidrug Resistance protein AFR_21660 PF00440 Bacterial regulatory proteins, tetR family AFR_21665 PF00356 Bacterial regulatory proteins, lacI family AFR_21665 PF13377 Periplasmic binding protein-like domain AFR_21670 PF13416 Bacterial extracellular solute-binding protein AFR_21675 PF00528 Binding-protein-dependent transport system inner membrane component AFR_21680 PF00528 Binding-protein-dependent transport system inner membrane component AFR_21685 PF10091 Putative glucoamylase AFR_21685 PF11329 AFR_21685 AFR_21690 PF01229 Glycosyl hydrolases family 39 AFR_21695 PF00072 Response regulator receiver domain AFR_21695 PF00196 Bacterial regulatory proteins, luxR family AFR_21700 PF07730 Histidine kinase AFR_21720 PF00082 Subtilase family AFR_21725 PF09489 AFR_21725 AFR_21730 PF09490 AFR_21730 AFR_21735 PF00300 Histidine phosphatase superfamily (branch 1) AFR_21745 PF01636 Phosphotransferase enzyme family AFR_21750 PF12840 Helix-turn-helix domain AFR_21760 PF12697 Alpha/beta hydrolase family AFR_21765 PF00072 Response regulator receiver domain AFR_21765 PF00512 His Kinase A (phospho-acceptor) domain AFR_21765 PF01627 Hpt domain AFR_21765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_21765 PF08448 PAS fold AFR_21775 PF13397 Domain of unknown function (DUF4109) AFR_21780 PF04186 AFR_21780 AFR_21785 PF00535 Glycosyl transferase family 2 AFR_21790 PF00795 Carbon-nitrogen hydrolase AFR_21795 PF13941 AFR_21795 AFR_21800 PF03061 Thioesterase superfamily AFR_21805 PF02310 B12 binding domain AFR_21805 PF16554 AFR_21805 AFR_21810 PF09043 D-Lysine 5,6-aminomutase alpha subunit AFR_21815 PF07969 Amidohydrolase family AFR_21830 PF05532 CsbD-like AFR_21835 PF08241 Methyltransferase domain AFR_21840 PF01636 Phosphotransferase enzyme family AFR_21845 PF00072 Response regulator receiver domain AFR_21845 PF00486 Transcriptional regulatory protein, C terminal AFR_21850 PF00561 alpha/beta hydrolase fold AFR_21855 PF01037 AsnC family AFR_21855 PF13412 Winged helix-turn-helix DNA-binding AFR_21860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_21860 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_21860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_21865 PF01367 5'-3' exonuclease, C-terminal SAM fold AFR_21865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AFR_21870 PF00563 EAL domain AFR_21870 PF00990 GGDEF domain AFR_21870 PF08448 PAS fold AFR_21875 PF04237 YjbR AFR_21880 PF00440 Bacterial regulatory proteins, tetR family AFR_21885 PF02230 Phospholipase/Carboxylesterase AFR_21890 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_21895 PF00989 PAS fold AFR_21895 PF00990 GGDEF domain AFR_21900 PF08592 AFR_21900 AFR_21910 PF01244 Membrane dipeptidase (Peptidase family M19) AFR_21925 PF00072 Response regulator receiver domain AFR_21925 PF00196 Bacterial regulatory proteins, luxR family AFR_21930 PF07730 Histidine kinase AFR_21935 PF00005 ABC transporter AFR_21950 PF05547 AFR_21950 AFR_21955 PF04199 Putative cyclase AFR_21970 PF13411 MerR HTH family regulatory protein AFR_21975 PF08487 AFR_21975 AFR_21975 PF13768 von Willebrand factor type A domain AFR_21980 PF00561 alpha/beta hydrolase fold AFR_21980 PF08386 TAP-like protein AFR_21985 PF00652 Ricin-type beta-trefoil lectin domain AFR_21990 PF14325 AFR_21990 AFR_21995 PF05067 Manganese containing catalase AFR_22000 PF10002 AFR_22000 AFR_22005 PF09678 AFR_22005 AFR_22015 PF01566 AFR_22015 AFR_22020 PF00072 Response regulator receiver domain AFR_22020 PF00196 Bacterial regulatory proteins, luxR family AFR_22035 PF00535 Glycosyl transferase family 2 AFR_22040 PF05401 Nodulation protein S (NodS) AFR_22045 PF02585 GlcNAc-PI de-N-acetylase AFR_22065 PF00005 ABC transporter AFR_22070 PF01061 AFR_22070 AFR_22075 PF05139 Erythromycin esterase AFR_22080 PF13560 Helix-turn-helix domain AFR_22085 PF00248 Aldo/keto reductase family AFR_22090 PF12706 Beta-lactamase superfamily domain AFR_22095 PF05977 Transmembrane secretion effector AFR_22100 PF00652 Ricin-type beta-trefoil lectin domain AFR_22105 PF05426 Alginate lyase AFR_22115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_22120 PF00583 Acetyltransferase (GNAT) family AFR_22135 PF00440 Bacterial regulatory proteins, tetR family AFR_22140 PF00106 short chain dehydrogenase AFR_22145 PF00440 Bacterial regulatory proteins, tetR family AFR_22145 PF13305 WHG domain AFR_22150 PF01553 Acyltransferase AFR_22155 PF00296 Luciferase-like monooxygenase AFR_22160 PF01156 Inosine-uridine preferring nucleoside hydrolase AFR_22165 PF04542 Sigma-70 region 2 AFR_22165 PF08281 Sigma-70, region 4 AFR_22175 PF00072 Response regulator receiver domain AFR_22175 PF00196 Bacterial regulatory proteins, luxR family AFR_22185 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_22190 PF07730 Histidine kinase AFR_22190 PF13185 GAF domain AFR_22190 PF13581 Histidine kinase-like ATPase domain AFR_22200 PF00881 Nitroreductase family AFR_22205 PF07681 AFR_22205 AFR_22210 PF01161 Phosphatidylethanolamine-binding protein AFR_22215 PF12802 MarR family AFR_22225 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_22230 PF01546 Peptidase family M20/M25/M40 AFR_22230 PF07687 Peptidase dimerisation domain AFR_22235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_22235 PF03466 LysR substrate binding domain AFR_22245 PF00581 Rhodanese-like domain AFR_22245 PF02558 Ketopantoate reductase PanE/ApbA AFR_22245 PF08546 Ketopantoate reductase PanE/ApbA C terminal AFR_22250 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22255 PF00005 ABC transporter AFR_22260 PF09084 NMT1/THI5 like AFR_22265 PF00296 Luciferase-like monooxygenase AFR_22270 PF09084 NMT1/THI5 like AFR_22275 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_22275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_22275 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_22280 PF01565 FAD binding domain AFR_22280 PF02913 FAD linked oxidases, C-terminal domain AFR_22290 PF13305 WHG domain AFR_22295 PF01042 Endoribonuclease L-PSP AFR_22300 PF00296 Luciferase-like monooxygenase AFR_22305 PF09084 NMT1/THI5 like AFR_22310 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22315 PF00005 ABC transporter AFR_22320 PF05360 AFR_22320 AFR_22330 PF13187 4Fe-4S dicluster domain AFR_22335 PF00890 FAD binding domain AFR_22340 PF00296 Luciferase-like monooxygenase AFR_22345 PF00296 Luciferase-like monooxygenase AFR_22350 PF00296 Luciferase-like monooxygenase AFR_22355 PF00296 Luciferase-like monooxygenase AFR_22360 PF00005 ABC transporter AFR_22360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_22365 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22370 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_22380 PF01636 Phosphotransferase enzyme family AFR_22385 PF00005 ABC transporter AFR_22390 PF02687 AFR_22390 AFR_22395 PF06445 GyrI-like small molecule binding domain AFR_22400 PF00582 Universal stress protein family AFR_22405 PF13520 Amino acid permease AFR_22415 PF00701 Dihydrodipicolinate synthetase family AFR_22420 PF05368 NmrA-like family AFR_22425 PF00440 Bacterial regulatory proteins, tetR family AFR_22430 PF01055 Glycosyl hydrolases family 31 AFR_22430 PF13802 Galactose mutarotase-like AFR_22435 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22440 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22445 PF13416 Bacterial extracellular solute-binding protein AFR_22450 PF07721 Tetratricopeptide repeat AFR_22460 PF00356 Bacterial regulatory proteins, lacI family AFR_22460 PF13377 Periplasmic binding protein-like domain AFR_22465 PF08241 Methyltransferase domain AFR_22470 PF00553 Cellulose binding domain AFR_22475 PF00534 Glycosyl transferases group 1 AFR_22475 PF13439 Glycosyltransferase Family 4 AFR_22475 PF13646 HEAT repeats AFR_22480 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFR_22485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_22485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_22490 PF01116 Fructose-bisphosphate aldolase class-II AFR_22495 PF00294 pfkB family carbohydrate kinase AFR_22500 PF03537 Glycoside-hydrolase family GH114 AFR_22505 PF00294 pfkB family carbohydrate kinase AFR_22510 PF13671 AAA domain AFR_22515 PF08241 Methyltransferase domain AFR_22525 PF13560 Helix-turn-helix domain AFR_22530 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22535 PF00528 Binding-protein-dependent transport system inner membrane component AFR_22540 PF13416 Bacterial extracellular solute-binding protein AFR_22550 PF02056 Family 4 glycosyl hydrolase AFR_22550 PF11975 Family 4 glycosyl hydrolase C-terminal domain AFR_22555 PF00455 AFR_22555 AFR_22555 PF08220 DeoR-like helix-turn-helix domain AFR_22560 PF04973 AFR_22560 AFR_22570 PF03551 Transcriptional regulator PadR-like family AFR_22580 PF00440 Bacterial regulatory proteins, tetR family AFR_22585 PF00106 short chain dehydrogenase AFR_22595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_22600 PF12697 Alpha/beta hydrolase family AFR_22605 PF12697 Alpha/beta hydrolase family AFR_22610 PF03816 Cell envelope-related transcriptional attenuator domain AFR_22615 PF00004 ATPase family associated with various cellular activities (AAA) AFR_22615 PF01434 Peptidase family M41 AFR_22620 PF00376 MerR family regulatory protein AFR_22625 PF01061 AFR_22625 AFR_22630 PF00005 ABC transporter AFR_22635 PF00348 Polyprenyl synthetase AFR_22640 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AFR_22645 PF01261 Xylose isomerase-like TIM barrel AFR_22650 PF01026 TatD related DNase AFR_22660 PF01261 Xylose isomerase-like TIM barrel AFR_22665 PF01040 UbiA prenyltransferase family AFR_22670 PF01658 Myo-inositol-1-phosphate synthase AFR_22670 PF07994 Myo-inositol-1-phosphate synthase AFR_22675 PF00069 Protein kinase domain AFR_22680 PF10824 Protein of unknown function (DUF2580) AFR_22685 PF06259 Alpha/beta hydrolase AFR_22695 PF01494 FAD binding domain AFR_22700 PF00440 Bacterial regulatory proteins, tetR family AFR_22710 PF13641 Glycosyltransferase like family 2 AFR_22715 PF05048 Periplasmic copper-binding protein (NosD) AFR_22715 PF13229 Right handed beta helix region AFR_22720 PF13229 Right handed beta helix region AFR_22725 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_22725 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_22725 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_22735 PF00113 Enolase, C-terminal TIM barrel domain AFR_22735 PF03952 Enolase, N-terminal domain AFR_22740 PF08534 Redoxin AFR_22740 PF13411 MerR HTH family regulatory protein AFR_22745 PF00994 Probable molybdopterin binding domain AFR_22745 PF03453 MoeA N-terminal region (domain I and II) AFR_22750 PF08241 Methyltransferase domain AFR_22755 PF01545 Cation efflux family AFR_22755 PF16916 AFR_22755 AFR_22760 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_22765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_22765 PF00672 HAMP domain AFR_22765 PF12729 AFR_22765 AFR_22770 PF00563 EAL domain AFR_22770 PF00990 GGDEF domain AFR_22780 PF04672 S-adenosyl methyltransferase AFR_22785 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_22785 PF01799 [2Fe-2S] binding domain AFR_22785 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFR_22790 PF00941 FAD binding domain in molybdopterin dehydrogenase AFR_22795 PF01636 Phosphotransferase enzyme family AFR_22800 PF00561 alpha/beta hydrolase fold AFR_22805 PF13520 Amino acid permease AFR_22810 PF00072 Response regulator receiver domain AFR_22810 PF00486 Transcriptional regulatory protein, C terminal AFR_22815 PF02146 Sir2 family AFR_22820 PF04542 Sigma-70 region 2 AFR_22835 PF03551 Transcriptional regulator PadR-like family AFR_22840 PF14024 AFR_22840 AFR_22845 PF04542 Sigma-70 region 2 AFR_22845 PF08281 Sigma-70, region 4 AFR_22850 PF07859 alpha/beta hydrolase fold AFR_22860 PF01066 CDP-alcohol phosphatidyltransferase AFR_22870 PF01022 Bacterial regulatory protein, arsR family AFR_22875 PF01734 Patatin-like phospholipase AFR_22880 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AFR_22880 PF09363 XFP C-terminal domain AFR_22880 PF09364 XFP N-terminal domain AFR_22885 PF13560 Helix-turn-helix domain AFR_22890 PF00248 Aldo/keto reductase family AFR_22895 PF13460 NADH(P)-binding AFR_22900 PF00459 Inositol monophosphatase family AFR_22905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_22905 PF03466 LysR substrate binding domain AFR_22910 PF01381 Helix-turn-helix AFR_22910 PF07883 Cupin domain AFR_22915 PF07690 Major Facilitator Superfamily AFR_22930 PF12697 Alpha/beta hydrolase family AFR_22935 PF14087 AFR_22935 AFR_22940 PF07366 SnoaL-like polyketide cyclase AFR_22945 PF00107 Zinc-binding dehydrogenase AFR_22945 PF08240 Alcohol dehydrogenase GroES-like domain AFR_22950 PF13560 Helix-turn-helix domain AFR_22960 PF00041 Fibronectin type III domain AFR_22965 PF13302 Acetyltransferase (GNAT) domain AFR_22970 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_22975 PF01494 FAD binding domain AFR_22980 PF00440 Bacterial regulatory proteins, tetR family AFR_22985 PF01636 Phosphotransferase enzyme family AFR_22990 PF09335 AFR_22990 AFR_22995 PF13466 STAS domain AFR_23000 PF02517 CAAX protease self-immunity AFR_23005 PF13460 NADH(P)-binding AFR_23010 PF00440 Bacterial regulatory proteins, tetR family AFR_23015 PF12697 Alpha/beta hydrolase family AFR_23020 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_23020 PF00175 Oxidoreductase NAD-binding domain AFR_23020 PF03473 MOSC domain AFR_23020 PF03475 3-alpha domain AFR_23025 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_23030 PF07690 Major Facilitator Superfamily AFR_23040 PF00106 short chain dehydrogenase AFR_23045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_23050 PF00196 Bacterial regulatory proteins, luxR family AFR_23050 PF13191 AAA ATPase domain AFR_23055 PF06441 Epoxide hydrolase N terminus AFR_23060 PF06441 Epoxide hydrolase N terminus AFR_23065 PF00300 Histidine phosphatase superfamily (branch 1) AFR_23075 PF04672 S-adenosyl methyltransferase AFR_23085 PF12697 Alpha/beta hydrolase family AFR_23090 PF12680 SnoaL-like domain AFR_23095 PF03176 MMPL family AFR_23105 PF00440 Bacterial regulatory proteins, tetR family AFR_23110 PF12740 Chlorophyllase enzyme AFR_23115 PF00296 Luciferase-like monooxygenase AFR_23120 PF12802 MarR family AFR_23125 PF00881 Nitroreductase family AFR_23135 PF13601 Winged helix DNA-binding domain AFR_23140 PF03403 Platelet-activating factor acetylhydrolase, isoform II AFR_23145 PF02525 Flavodoxin-like fold AFR_23150 PF13463 Winged helix DNA-binding domain AFR_23155 PF03551 Transcriptional regulator PadR-like family AFR_23155 PF10400 Virulence activator alpha C-term AFR_23160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_23170 PF01061 AFR_23170 AFR_23175 PF00106 short chain dehydrogenase AFR_23180 PF13560 Helix-turn-helix domain AFR_23185 PF00122 E1-E2 ATPase AFR_23185 PF00702 haloacid dehalogenase-like hydrolase AFR_23195 PF00082 Subtilase family AFR_23215 PF00196 Bacterial regulatory proteins, luxR family AFR_23215 PF13185 GAF domain AFR_23220 PF01116 Fructose-bisphosphate aldolase class-II AFR_23225 PF13419 Haloacid dehalogenase-like hydrolase AFR_23230 PF02734 DAK2 domain AFR_23235 PF02733 Dak1 domain AFR_23240 PF12158 AFR_23240 AFR_23245 PF12840 Helix-turn-helix domain AFR_23250 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_23265 PF02735 Ku70/Ku80 beta-barrel domain AFR_23275 PF00296 Luciferase-like monooxygenase AFR_23280 PF00753 Metallo-beta-lactamase superfamily AFR_23285 PF13091 PLD-like domain AFR_23290 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_23290 PF01756 Acyl-CoA oxidase AFR_23290 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_23290 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_23295 PF00106 short chain dehydrogenase AFR_23305 PF13641 Glycosyltransferase like family 2 AFR_23310 PF04101 Glycosyltransferase family 28 C-terminal domain AFR_23315 PF00534 Glycosyl transferases group 1 AFR_23315 PF13439 Glycosyltransferase Family 4 AFR_23320 PF13439 Glycosyltransferase Family 4 AFR_23335 PF00535 Glycosyl transferase family 2 AFR_23335 PF02709 N-terminal domain of galactosyltransferase AFR_23340 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_23360 PF02810 SEC-C motif AFR_23375 PF01609 Transposase DDE domain AFR_23380 PF13466 STAS domain AFR_23385 PF13581 Histidine kinase-like ATPase domain AFR_23390 PF00535 Glycosyl transferase family 2 AFR_23395 PF00199 Catalase AFR_23395 PF06628 Catalase-related immune-responsive AFR_23400 PF00652 Ricin-type beta-trefoil lectin domain AFR_23400 PF02055 O-Glycosyl hydrolase family 30 AFR_23400 PF17189 AFR_23400 AFR_23410 PF13714 Phosphoenolpyruvate phosphomutase AFR_23415 PF00107 Zinc-binding dehydrogenase AFR_23415 PF08240 Alcohol dehydrogenase GroES-like domain AFR_23425 PF03033 Glycosyltransferase family 28 N-terminal domain AFR_23435 PF01636 Phosphotransferase enzyme family AFR_23440 PF13564 AFR_23440 AFR_23445 PF03098 Animal haem peroxidase AFR_23450 PF04542 Sigma-70 region 2 AFR_23450 PF08281 Sigma-70, region 4 AFR_23455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_23460 PF13460 NADH(P)-binding AFR_23465 PF00072 Response regulator receiver domain AFR_23465 PF00486 Transcriptional regulatory protein, C terminal AFR_23470 PF00512 His Kinase A (phospho-acceptor) domain AFR_23470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_23480 PF00174 Oxidoreductase molybdopterin binding domain AFR_23485 PF13649 Methyltransferase domain AFR_23490 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) AFR_23495 PF00535 Glycosyl transferase family 2 AFR_23500 PF01370 NAD dependent epimerase/dehydratase family AFR_23510 PF09362 AFR_23510 AFR_23515 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_23520 PF12840 Helix-turn-helix domain AFR_23525 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_23530 PF00571 CBS domain AFR_23535 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_23540 PF06441 Epoxide hydrolase N terminus AFR_23545 PF00440 Bacterial regulatory proteins, tetR family AFR_23550 PF01494 FAD binding domain AFR_23555 PF00561 alpha/beta hydrolase fold AFR_23560 PF00722 Glycosyl hydrolases family 16 AFR_23565 PF02016 LD-carboxypeptidase AFR_23580 PF00665 Integrase core domain AFR_23580 PF13936 Helix-turn-helix domain AFR_23585 PF13546 AFR_23585 AFR_23595 PF01522 Polysaccharide deacetylase AFR_23600 PF00196 Bacterial regulatory proteins, luxR family AFR_23600 PF12697 Alpha/beta hydrolase family AFR_23605 PF08241 Methyltransferase domain AFR_23610 PF11042 AFR_23610 AFR_23615 PF01497 Periplasmic binding protein AFR_23620 PF01032 FecCD transport family AFR_23625 PF01032 FecCD transport family AFR_23630 PF00005 ABC transporter AFR_23635 PF00005 ABC transporter AFR_23635 PF00664 ABC transporter transmembrane region AFR_23640 PF00005 ABC transporter AFR_23640 PF00664 ABC transporter transmembrane region AFR_23645 PF13847 Methyltransferase domain AFR_23650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_23650 PF03466 LysR substrate binding domain AFR_23655 PF00296 Luciferase-like monooxygenase AFR_23665 PF03621 MbtH-like protein AFR_23670 PF00501 AMP-binding enzyme AFR_23670 PF00550 Phosphopantetheine attachment site AFR_23670 PF00668 Condensation domain AFR_23670 PF13193 AMP-binding enzyme C-terminal domain AFR_23675 PF00501 AMP-binding enzyme AFR_23675 PF00550 Phosphopantetheine attachment site AFR_23675 PF00668 Condensation domain AFR_23680 PF00501 AMP-binding enzyme AFR_23680 PF00550 Phosphopantetheine attachment site AFR_23680 PF00668 Condensation domain AFR_23680 PF13193 AMP-binding enzyme C-terminal domain AFR_23680 PF13649 Methyltransferase domain AFR_23685 PF00743 Flavin-binding monooxygenase-like AFR_23690 PF07883 Cupin domain AFR_23695 PF01614 Bacterial transcriptional regulator AFR_23695 PF09339 IclR helix-turn-helix domain AFR_23700 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_23705 PF07883 Cupin domain AFR_23710 PF00561 alpha/beta hydrolase fold AFR_23715 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AFR_23720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_23720 PF03466 LysR substrate binding domain AFR_23730 PF00202 Aminotransferase class-III AFR_23735 PF01370 NAD dependent epimerase/dehydratase family AFR_23745 PF00682 HMGL-like AFR_23745 PF07836 DmpG-like communication domain AFR_23750 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFR_23750 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AFR_23755 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_23760 PF01614 Bacterial transcriptional regulator AFR_23760 PF09339 IclR helix-turn-helix domain AFR_23795 PF00485 Phosphoribulokinase / Uridine kinase family AFR_23800 PF00923 Transaldolase AFR_23805 PF13460 NADH(P)-binding AFR_23810 PF00440 Bacterial regulatory proteins, tetR family AFR_23830 PF13290 AFR_23830 AFR_23830 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_23835 PF00155 Aminotransferase class I and II AFR_23835 PF00392 Bacterial regulatory proteins, gntR family AFR_23840 PF00892 EamA-like transporter family AFR_23845 PF11774 Lsr2 AFR_23855 PF07690 Major Facilitator Superfamily AFR_23860 PF00106 short chain dehydrogenase AFR_23870 PF04542 Sigma-70 region 2 AFR_23870 PF08281 Sigma-70, region 4 AFR_23890 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_23900 PF06197 AFR_23900 AFR_23915 PF04542 Sigma-70 region 2 AFR_23915 PF08281 Sigma-70, region 4 AFR_23920 PF03795 YCII-related domain AFR_23925 PF04542 Sigma-70 region 2 AFR_23925 PF08281 Sigma-70, region 4 AFR_23930 PF01047 MarR family AFR_23935 PF00892 EamA-like transporter family AFR_23940 PF03741 AFR_23940 AFR_23945 PF13460 NADH(P)-binding AFR_23950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_23950 PF03466 LysR substrate binding domain AFR_23965 PF01547 Bacterial extracellular solute-binding protein AFR_23970 PF00528 Binding-protein-dependent transport system inner membrane component AFR_23975 PF00528 Binding-protein-dependent transport system inner membrane component AFR_23980 PF00343 Carbohydrate phosphorylase AFR_23995 PF00512 His Kinase A (phospho-acceptor) domain AFR_23995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_23995 PF05227 CHASE3 domain AFR_24000 PF00512 His Kinase A (phospho-acceptor) domain AFR_24000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24020 PF00005 ABC transporter AFR_24025 PF09350 AFR_24025 AFR_24030 PF13714 Phosphoenolpyruvate phosphomutase AFR_24035 PF12840 Helix-turn-helix domain AFR_24040 PF00106 short chain dehydrogenase AFR_24045 PF13560 Helix-turn-helix domain AFR_24050 PF12679 AFR_24050 AFR_24055 PF00005 ABC transporter AFR_24060 PF00072 Response regulator receiver domain AFR_24060 PF00486 Transcriptional regulatory protein, C terminal AFR_24065 PF00512 His Kinase A (phospho-acceptor) domain AFR_24065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24070 PF02055 O-Glycosyl hydrolase family 30 AFR_24070 PF03422 Carbohydrate binding module (family 6) AFR_24080 PF04542 Sigma-70 region 2 AFR_24080 PF08281 Sigma-70, region 4 AFR_24085 PF00501 AMP-binding enzyme AFR_24090 PF13560 Helix-turn-helix domain AFR_24095 PF04672 S-adenosyl methyltransferase AFR_24100 PF00455 AFR_24100 AFR_24100 PF08220 DeoR-like helix-turn-helix domain AFR_24110 PF04073 Aminoacyl-tRNA editing domain AFR_24115 PF00512 His Kinase A (phospho-acceptor) domain AFR_24115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24115 PF03924 CHASE domain AFR_24120 PF02652 AFR_24120 AFR_24130 PF00324 Amino acid permease AFR_24135 PF05719 Golgi phosphoprotein 3 (GPP34) AFR_24140 PF13560 Helix-turn-helix domain AFR_24145 PF04149 AFR_24145 AFR_24150 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_24150 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_24165 PF13407 Periplasmic binding protein domain AFR_24170 PF04672 S-adenosyl methyltransferase AFR_24175 PF00072 Response regulator receiver domain AFR_24175 PF00512 His Kinase A (phospho-acceptor) domain AFR_24175 PF00989 PAS fold AFR_24175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24175 PF08448 PAS fold AFR_24175 PF13426 PAS domain AFR_24180 PF01636 Phosphotransferase enzyme family AFR_24185 PF10282 Lactonase, 7-bladed beta-propeller AFR_24190 PF00128 Alpha amylase, catalytic domain AFR_24190 PF11896 Domain of unknown function (DUF3416) AFR_24195 PF00072 Response regulator receiver domain AFR_24195 PF00196 Bacterial regulatory proteins, luxR family AFR_24200 PF07730 Histidine kinase AFR_24200 PF13796 AFR_24200 AFR_24205 PF00005 ABC transporter AFR_24210 PF02687 AFR_24210 AFR_24215 PF00027 Cyclic nucleotide-binding domain AFR_24215 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_24220 PF00440 Bacterial regulatory proteins, tetR family AFR_24225 PF01370 NAD dependent epimerase/dehydratase family AFR_24230 PF00005 ABC transporter AFR_24230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_24235 PF00528 Binding-protein-dependent transport system inner membrane component AFR_24240 PF00528 Binding-protein-dependent transport system inner membrane component AFR_24245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_24250 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_24280 PF04228 AFR_24280 AFR_24290 PF07228 Stage II sporulation protein E (SpoIIE) AFR_24295 PF13466 STAS domain AFR_24300 PF13581 Histidine kinase-like ATPase domain AFR_24305 PF05175 Methyltransferase small domain AFR_24310 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_24315 PF00107 Zinc-binding dehydrogenase AFR_24315 PF08240 Alcohol dehydrogenase GroES-like domain AFR_24335 PF00440 Bacterial regulatory proteins, tetR family AFR_24340 PF00106 short chain dehydrogenase AFR_24345 PF04138 AFR_24345 AFR_24350 PF01936 NYN domain AFR_24350 PF12872 OST-HTH/LOTUS domain AFR_24355 PF05977 Transmembrane secretion effector AFR_24360 PF12802 MarR family AFR_24365 PF00440 Bacterial regulatory proteins, tetR family AFR_24370 PF00107 Zinc-binding dehydrogenase AFR_24370 PF08240 Alcohol dehydrogenase GroES-like domain AFR_24375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_24375 PF03466 LysR substrate binding domain AFR_24380 PF00892 EamA-like transporter family AFR_24385 PF00005 ABC transporter AFR_24385 PF08402 TOBE domain AFR_24390 PF00528 Binding-protein-dependent transport system inner membrane component AFR_24395 PF13416 Bacterial extracellular solute-binding protein AFR_24400 PF00072 Response regulator receiver domain AFR_24400 PF00486 Transcriptional regulatory protein, C terminal AFR_24405 PF00512 His Kinase A (phospho-acceptor) domain AFR_24405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_24410 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AFR_24415 PF00005 ABC transporter AFR_24420 PF09084 NMT1/THI5 like AFR_24425 PF00528 Binding-protein-dependent transport system inner membrane component AFR_24430 PF12796 Ankyrin repeats (3 copies) AFR_24435 PF03795 YCII-related domain AFR_24440 PF04542 Sigma-70 region 2 AFR_24440 PF08281 Sigma-70, region 4 AFR_24445 PF08241 Methyltransferase domain AFR_24450 PF00578 AhpC/TSA family AFR_24465 PF00484 Carbonic anhydrase AFR_24470 PF00890 FAD binding domain AFR_24475 PF13556 PucR C-terminal helix-turn-helix domain AFR_24480 PF03734 L,D-transpeptidase catalytic domain AFR_24485 PF07987 Domain of unkown function (DUF1775) AFR_24490 PF07690 Major Facilitator Superfamily AFR_24495 PF13411 MerR HTH family regulatory protein AFR_24505 PF00754 F5/8 type C domain AFR_24505 PF02055 O-Glycosyl hydrolase family 30 AFR_24505 PF17189 AFR_24505 AFR_24510 PF00356 Bacterial regulatory proteins, lacI family AFR_24510 PF13377 Periplasmic binding protein-like domain AFR_24520 PF00563 EAL domain AFR_24520 PF00989 PAS fold AFR_24520 PF00990 GGDEF domain AFR_24525 PF00009 Elongation factor Tu GTP binding domain AFR_24525 PF00679 Elongation factor G C-terminus AFR_24525 PF03764 Elongation factor G, domain IV AFR_24530 PF08445 FR47-like protein AFR_24535 PF12680 SnoaL-like domain AFR_24540 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_24540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_24540 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_24545 PF03773 AFR_24545 AFR_24550 PF09323 AFR_24550 AFR_24565 PF05787 Bacterial protein of unknown function (DUF839) AFR_24570 PF01266 FAD dependent oxidoreductase AFR_24575 PF05360 AFR_24575 AFR_24580 PF00270 DEAD/DEAH box helicase AFR_24580 PF00271 Helicase conserved C-terminal domain AFR_24580 PF03880 DbpA RNA binding domain AFR_24585 PF08837 Protein of unknown function (DUF1810) AFR_24590 PF06150 ChaB AFR_24590 PF07498 Rho termination factor, N-terminal domain AFR_24595 PF07730 Histidine kinase AFR_24600 PF00072 Response regulator receiver domain AFR_24600 PF00196 Bacterial regulatory proteins, luxR family AFR_24605 PF07519 Tannase and feruloyl esterase AFR_24620 PF04542 Sigma-70 region 2 AFR_24620 PF08281 Sigma-70, region 4 AFR_24625 PF02517 CAAX protease self-immunity AFR_24630 PF00440 Bacterial regulatory proteins, tetR family AFR_24635 PF12680 SnoaL-like domain AFR_24640 PF13376 AFR_24640 AFR_24645 PF00248 Aldo/keto reductase family AFR_24650 PF09851 AFR_24650 AFR_24650 PF14470 Bacterial PH domain AFR_24655 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_24660 PF13228 AFR_24660 AFR_24665 PF00128 Alpha amylase, catalytic domain AFR_24665 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_24670 PF07690 Major Facilitator Superfamily AFR_24675 PF08241 Methyltransferase domain AFR_24680 PF13671 AAA domain AFR_24685 PF13466 STAS domain AFR_24685 PF14417 AFR_24685 AFR_24690 PF12840 Helix-turn-helix domain AFR_24695 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_24700 PF05139 Erythromycin esterase AFR_24710 PF04542 Sigma-70 region 2 AFR_24710 PF08281 Sigma-70, region 4 AFR_24720 PF13671 AAA domain AFR_24730 PF03403 Platelet-activating factor acetylhydrolase, isoform II AFR_24735 PF01152 Bacterial-like globin AFR_24740 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_24740 PF00553 Cellulose binding domain AFR_24745 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_24750 PF00293 NUDIX domain AFR_24760 PF00703 Glycosyl hydrolases family 2 AFR_24760 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AFR_24760 PF02837 Glycosyl hydrolases family 2, sugar binding domain AFR_24760 PF02929 Beta galactosidase small chain AFR_24760 PF08305 NPCBM/NEW2 domain AFR_24760 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AFR_24760 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_24770 PF12695 Alpha/beta hydrolase family AFR_24775 PF04248 Domain of unknown function (DUF427) AFR_24780 PF05853 Prokaryotic protein of unknown function (DUF849) AFR_24785 PF03861 ANTAR domain AFR_24785 PF07228 Stage II sporulation protein E (SpoIIE) AFR_24790 PF01841 Transglutaminase-like superfamily AFR_24790 PF08379 AFR_24790 AFR_24800 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_24805 PF04542 Sigma-70 region 2 AFR_24805 PF08281 Sigma-70, region 4 AFR_24805 PF12680 SnoaL-like domain AFR_24810 PF02452 PemK-like protein AFR_24815 PF00990 GGDEF domain AFR_24820 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AFR_24820 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_24825 PF00563 EAL domain AFR_24825 PF00990 GGDEF domain AFR_24830 PF07730 Histidine kinase AFR_24835 PF00072 Response regulator receiver domain AFR_24835 PF00196 Bacterial regulatory proteins, luxR family AFR_24840 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFR_24840 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFR_24840 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFR_24840 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFR_24845 PF04234 CopC domain AFR_24845 PF05425 AFR_24845 AFR_24850 PF13466 STAS domain AFR_24855 PF03883 AFR_24855 AFR_24860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFR_24870 PF03176 MMPL family AFR_24875 PF00106 short chain dehydrogenase AFR_24880 PF01638 HxlR-like helix-turn-helix AFR_24885 PF13460 NADH(P)-binding AFR_24890 PF13649 Methyltransferase domain AFR_24895 PF05139 Erythromycin esterase AFR_24900 PF00932 Lamin Tail Domain AFR_24910 PF00176 SNF2 family N-terminal domain AFR_24910 PF00271 Helicase conserved C-terminal domain AFR_24910 PF12419 AFR_24910 AFR_24925 PF13374 Tetratricopeptide repeat AFR_24925 PF13424 Tetratricopeptide repeat AFR_24935 PF12802 MarR family AFR_24940 PF07690 Major Facilitator Superfamily AFR_24945 PF07478 D-ala D-ala ligase C-terminus AFR_24950 PF00756 Putative esterase AFR_24955 PF01740 STAS domain AFR_24960 PF13520 Amino acid permease AFR_24965 PF00582 Universal stress protein family AFR_24975 PF00069 Protein kinase domain AFR_24985 PF02675 S-adenosylmethionine decarboxylase AFR_24995 PF00685 Sulfotransferase domain AFR_25000 PF00535 Glycosyl transferase family 2 AFR_25005 PF00535 Glycosyl transferase family 2 AFR_25010 PF00535 Glycosyl transferase family 2 AFR_25020 PF07760 AFR_25020 AFR_25025 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AFR_25025 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AFR_25030 PF02156 Glycosyl hydrolase family 26 AFR_25035 PF01522 Polysaccharide deacetylase AFR_25050 PF00149 Calcineurin-like phosphoesterase AFR_25055 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase AFR_25060 PF00005 ABC transporter AFR_25060 PF00664 ABC transporter transmembrane region AFR_25065 PF13365 Trypsin-like peptidase domain AFR_25070 PF00753 Metallo-beta-lactamase superfamily AFR_25075 PF02517 CAAX protease self-immunity AFR_25080 PF05305 AFR_25080 AFR_25085 PF01471 Putative peptidoglycan binding domain AFR_25090 PF00356 Bacterial regulatory proteins, lacI family AFR_25090 PF13377 Periplasmic binding protein-like domain AFR_25105 PF00196 Bacterial regulatory proteins, luxR family AFR_25105 PF13191 AAA ATPase domain AFR_25105 PF14559 Tetratricopeptide repeat AFR_25110 PF04542 Sigma-70 region 2 AFR_25115 PF02016 LD-carboxypeptidase AFR_25120 PF13556 PucR C-terminal helix-turn-helix domain AFR_25125 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_25125 PF00175 Oxidoreductase NAD-binding domain AFR_25125 PF00970 Oxidoreductase FAD-binding domain AFR_25130 PF00487 AFR_25130 AFR_25135 PF01565 FAD binding domain AFR_25135 PF04030 D-arabinono-1,4-lactone oxidase AFR_25140 PF04542 Sigma-70 region 2 AFR_25140 PF08281 Sigma-70, region 4 AFR_25140 PF12680 SnoaL-like domain AFR_25145 PF00041 Fibronectin type III domain AFR_25145 PF02368 Bacterial Ig-like domain (group 2) AFR_25150 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFR_25155 PF13628 AFR_25155 AFR_25160 PF02705 AFR_25160 AFR_25165 PF01872 RibD C-terminal domain AFR_25170 PF01139 tRNA-splicing ligase RtcB AFR_25175 PF03572 Peptidase family S41 AFR_25185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_25185 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_25185 PF12418 AFR_25185 AFR_25185 PF12806 AFR_25185 AFR_25190 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_25195 PF04909 Amidohydrolase AFR_25200 PF06964 Alpha-L-arabinofuranosidase C-terminus AFR_25205 PF04616 Glycosyl hydrolases family 43 AFR_25210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_25210 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_25225 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AFR_25235 PF01636 Phosphotransferase enzyme family AFR_25240 PF13238 AAA domain AFR_25245 PF14100 AFR_25245 AFR_25250 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_25255 PF01232 Mannitol dehydrogenase Rossmann domain AFR_25255 PF08125 Mannitol dehydrogenase C-terminal domain AFR_25260 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_25260 PF13378 Enolase C-terminal domain-like AFR_25265 PF02614 Glucuronate isomerase AFR_25270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_25270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_25275 PF00356 Bacterial regulatory proteins, lacI family AFR_25275 PF13377 Periplasmic binding protein-like domain AFR_25280 PF01547 Bacterial extracellular solute-binding protein AFR_25285 PF00528 Binding-protein-dependent transport system inner membrane component AFR_25290 PF00528 Binding-protein-dependent transport system inner membrane component AFR_25300 PF04542 Sigma-70 region 2 AFR_25300 PF08281 Sigma-70, region 4 AFR_25310 PF00571 CBS domain AFR_25320 PF00440 Bacterial regulatory proteins, tetR family AFR_25320 PF16859 AFR_25320 AFR_25325 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_25330 PF04024 AFR_25330 AFR_25335 PF01494 FAD binding domain AFR_25340 PF00465 Iron-containing alcohol dehydrogenase AFR_25340 PF00775 Dioxygenase AFR_25340 PF04444 Catechol dioxygenase N terminus AFR_25345 PF12833 Helix-turn-helix domain AFR_25350 PF00069 Protein kinase domain AFR_25355 PF00248 Aldo/keto reductase family AFR_25360 PF01385 AFR_25360 AFR_25360 PF07282 AFR_25360 AFR_25360 PF12323 AFR_25360 AFR_25375 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_25380 PF00652 Ricin-type beta-trefoil lectin domain AFR_25380 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_25385 PF03067 Chitin binding domain AFR_25390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AFR_25400 PF00528 Binding-protein-dependent transport system inner membrane component AFR_25405 PF00528 Binding-protein-dependent transport system inner membrane component AFR_25410 PF01547 Bacterial extracellular solute-binding protein AFR_25415 PF13275 S4 domain AFR_25420 PF07987 Domain of unkown function (DUF1775) AFR_25430 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AFR_25430 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AFR_25435 PF00578 AhpC/TSA family AFR_25440 PF13466 STAS domain AFR_25450 PF01048 Phosphorylase superfamily AFR_25460 PF13407 Periplasmic binding protein domain AFR_25465 PF00005 ABC transporter AFR_25470 PF02653 AFR_25470 AFR_25475 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AFR_25485 PF00512 His Kinase A (phospho-acceptor) domain AFR_25485 PF00672 HAMP domain AFR_25485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_25495 PF00072 Response regulator receiver domain AFR_25495 PF00486 Transcriptional regulatory protein, C terminal AFR_25500 PF00480 ROK family AFR_25505 PF08811 AFR_25505 AFR_25510 PF07394 AFR_25510 AFR_25525 PF02653 AFR_25525 AFR_25530 PF00005 ABC transporter AFR_25535 PF13407 Periplasmic binding protein domain AFR_25540 PF02610 L-arabinose isomerase AFR_25540 PF11762 L-arabinose isomerase C-terminal domain AFR_25545 PF00596 Class II Aldolase and Adducin N-terminal domain AFR_25550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_25550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_25555 PF00356 Bacterial regulatory proteins, lacI family AFR_25555 PF13377 Periplasmic binding protein-like domain AFR_25560 PF10009 AFR_25560 AFR_25565 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_25575 PF01757 AFR_25575 AFR_25580 PF02678 Pirin AFR_25580 PF05726 Pirin C-terminal cupin domain AFR_25595 PF00990 GGDEF domain AFR_25600 PF00892 EamA-like transporter family AFR_25605 PF02687 AFR_25605 AFR_25605 PF12704 MacB-like periplasmic core domain AFR_25610 PF00005 ABC transporter AFR_25615 PF13437 HlyD family secretion protein AFR_25615 PF13533 Biotin-lipoyl like AFR_25625 PF03734 L,D-transpeptidase catalytic domain AFR_25630 PF00188 Cysteine-rich secretory protein family AFR_25635 PF01757 AFR_25635 AFR_25640 PF09471 IgA Peptidase M64 AFR_25645 PF00072 Response regulator receiver domain AFR_25645 PF00196 Bacterial regulatory proteins, luxR family AFR_25650 PF07730 Histidine kinase AFR_25655 PF02687 AFR_25655 AFR_25655 PF12704 MacB-like periplasmic core domain AFR_25660 PF00005 ABC transporter AFR_25665 PF01584 CheW-like domain AFR_25670 PF01739 CheR methyltransferase, SAM binding domain AFR_25675 PF01584 CheW-like domain AFR_25680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_25680 PF05227 CHASE3 domain AFR_25685 PF00072 Response regulator receiver domain AFR_25685 PF01584 CheW-like domain AFR_25685 PF01627 Hpt domain AFR_25685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_25690 PF00072 Response regulator receiver domain AFR_25690 PF01339 CheB methylesterase AFR_25695 PF00072 Response regulator receiver domain AFR_25695 PF00512 His Kinase A (phospho-acceptor) domain AFR_25695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_25700 PF01510 N-acetylmuramoyl-L-alanine amidase AFR_25705 PF13302 Acetyltransferase (GNAT) domain AFR_25710 PF03992 Antibiotic biosynthesis monooxygenase AFR_25715 PF07859 alpha/beta hydrolase fold AFR_25720 PF02687 AFR_25720 AFR_25725 PF00005 ABC transporter AFR_25730 PF07730 Histidine kinase AFR_25735 PF00072 Response regulator receiver domain AFR_25735 PF00196 Bacterial regulatory proteins, luxR family AFR_25745 PF13578 Methyltransferase domain AFR_25750 PF13302 Acetyltransferase (GNAT) domain AFR_25755 PF01047 MarR family AFR_25760 PF03713 Domain of unknown function (DUF305) AFR_25765 PF03067 Chitin binding domain AFR_25770 PF00563 EAL domain AFR_25770 PF00989 PAS fold AFR_25770 PF00990 GGDEF domain AFR_25775 PF00563 EAL domain AFR_25775 PF10069 AFR_25775 AFR_25780 PF01522 Polysaccharide deacetylase AFR_25785 PF06114 Domain of unknown function (DUF955) AFR_25785 PF13560 Helix-turn-helix domain AFR_25790 PF00463 Isocitrate lyase family AFR_25795 PF01274 Malate synthase AFR_25800 PF01232 Mannitol dehydrogenase Rossmann domain AFR_25800 PF08125 Mannitol dehydrogenase C-terminal domain AFR_25805 PF03211 Pectate lyase AFR_25810 PF00583 Acetyltransferase (GNAT) family AFR_25815 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_25825 PF00759 Glycosyl hydrolase family 9 AFR_25825 PF02018 Carbohydrate binding domain AFR_25825 PF02927 N-terminal ig-like domain of cellulase AFR_25830 PF13302 Acetyltransferase (GNAT) domain AFR_25835 PF00293 NUDIX domain AFR_25845 PF00012 Hsp70 protein AFR_25845 PF07676 WD40-like Beta Propeller Repeat AFR_25850 PF13302 Acetyltransferase (GNAT) domain AFR_25860 PF00350 Dynamin family AFR_25865 PF00350 Dynamin family AFR_25870 PF03595 Voltage-dependent anion channel AFR_25875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_25875 PF03466 LysR substrate binding domain AFR_25880 PF00107 Zinc-binding dehydrogenase AFR_25880 PF08240 Alcohol dehydrogenase GroES-like domain AFR_25885 PF01638 HxlR-like helix-turn-helix AFR_25890 PF07995 Glucose / Sorbosone dehydrogenase AFR_25890 PF13205 Bacterial Ig-like domain AFR_25895 PF14520 Helix-hairpin-helix domain AFR_25900 PF12697 Alpha/beta hydrolase family AFR_25905 PF12697 Alpha/beta hydrolase family AFR_25910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_25910 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_25915 PF00563 EAL domain AFR_25915 PF00990 GGDEF domain AFR_25920 PF00563 EAL domain AFR_25920 PF00990 GGDEF domain AFR_25925 PF00931 NB-ARC domain AFR_25925 PF13676 TIR domain AFR_25935 PF13176 Tetratricopeptide repeat AFR_25935 PF13374 Tetratricopeptide repeat AFR_25935 PF13424 Tetratricopeptide repeat AFR_25940 PF00004 ATPase family associated with various cellular activities (AAA) AFR_25950 PF00486 Transcriptional regulatory protein, C terminal AFR_25950 PF00931 NB-ARC domain AFR_25950 PF03704 Bacterial transcriptional activator domain AFR_25950 PF13424 Tetratricopeptide repeat AFR_25950 PF13560 Helix-turn-helix domain AFR_25955 PF00534 Glycosyl transferases group 1 AFR_25955 PF13439 Glycosyltransferase Family 4 AFR_25960 PF00795 Carbon-nitrogen hydrolase AFR_25965 PF00795 Carbon-nitrogen hydrolase AFR_25970 PF00586 AIR synthase related protein, N-terminal domain AFR_25970 PF02769 AIR synthase related protein, C-terminal domain AFR_25970 PF13673 Acetyltransferase (GNAT) domain AFR_25975 PF04055 Radical SAM superfamily AFR_25980 PF02635 DsrE/DsrF-like family AFR_25985 PF04909 Amidohydrolase AFR_25990 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFR_26005 PF00553 Cellulose binding domain AFR_26010 PF00553 Cellulose binding domain AFR_26010 PF01341 Glycosyl hydrolases family 6 AFR_26015 PF00072 Response regulator receiver domain AFR_26015 PF00196 Bacterial regulatory proteins, luxR family AFR_26020 PF07730 Histidine kinase AFR_26025 PF03176 MMPL family AFR_26030 PF14378 AFR_26030 AFR_26055 PF01810 AFR_26055 AFR_26060 PF10979 AFR_26060 AFR_26070 PF00656 Caspase domain AFR_26070 PF13519 von Willebrand factor type A domain AFR_26070 PF13531 Bacterial extracellular solute-binding protein AFR_26075 PF13416 Bacterial extracellular solute-binding protein AFR_26080 PF01433 Peptidase family M1 AFR_26085 PF06736 AFR_26085 AFR_26100 PF13370 4Fe-4S single cluster domain AFR_26105 PF01261 Xylose isomerase-like TIM barrel AFR_26115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_26115 PF13378 Enolase C-terminal domain-like AFR_26120 PF00528 Binding-protein-dependent transport system inner membrane component AFR_26125 PF00528 Binding-protein-dependent transport system inner membrane component AFR_26130 PF01547 Bacterial extracellular solute-binding protein AFR_26135 PF01614 Bacterial transcriptional regulator AFR_26135 PF09339 IclR helix-turn-helix domain AFR_26140 PF01370 NAD dependent epimerase/dehydratase family AFR_26145 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_26145 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_26150 PF03328 HpcH/HpaI aldolase/citrate lyase family AFR_26155 PF00656 Caspase domain AFR_26165 PF00754 F5/8 type C domain AFR_26165 PF00801 PKD domain AFR_26165 PF03422 Carbohydrate binding module (family 6) AFR_26165 PF06283 Trehalose utilisation AFR_26165 PF07995 Glucose / Sorbosone dehydrogenase AFR_26170 PF12802 MarR family AFR_26175 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_26190 PF06267 Family of unknown function (DUF1028) AFR_26190 PF08823 AFR_26190 AFR_26195 PF00072 Response regulator receiver domain AFR_26195 PF00196 Bacterial regulatory proteins, luxR family AFR_26200 PF07730 Histidine kinase AFR_26200 PF13796 AFR_26200 AFR_26205 PF00005 ABC transporter AFR_26210 PF02687 AFR_26210 AFR_26215 PF00501 AMP-binding enzyme AFR_26215 PF13193 AMP-binding enzyme C-terminal domain AFR_26225 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_26235 PF00069 Protein kinase domain AFR_26235 PF16918 AFR_26235 AFR_26235 PF16919 AFR_26235 AFR_26240 PF12773 AFR_26240 AFR_26240 PF13672 Protein phosphatase 2C AFR_26245 PF13768 von Willebrand factor type A domain AFR_26250 PF00498 FHA domain AFR_26255 PF04978 Protein of unknown function (DUF664) AFR_26260 PF00754 F5/8 type C domain AFR_26260 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_26265 PF08044 AFR_26265 AFR_26270 PF00459 Inositol monophosphatase family AFR_26275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_26280 PF04542 Sigma-70 region 2 AFR_26280 PF08281 Sigma-70, region 4 AFR_26280 PF12680 SnoaL-like domain AFR_26285 PF00544 Pectate lyase AFR_26290 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_26295 PF01965 DJ-1/PfpI family AFR_26295 PF12833 Helix-turn-helix domain AFR_26300 PF03435 Saccharopine dehydrogenase AFR_26305 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AFR_26310 PF00356 Bacterial regulatory proteins, lacI family AFR_26310 PF13377 Periplasmic binding protein-like domain AFR_26320 PF00270 DEAD/DEAH box helicase AFR_26320 PF00271 Helicase conserved C-terminal domain AFR_26320 PF08148 DSHCT (NUC185) domain AFR_26325 PF00702 haloacid dehalogenase-like hydrolase AFR_26335 PF00781 Diacylglycerol kinase catalytic domain AFR_26340 PF00902 Sec-independent protein translocase protein (TatC) AFR_26345 PF02416 mttA/Hcf106 family AFR_26355 PF13280 AFR_26355 AFR_26360 PF13280 AFR_26360 AFR_26365 PF01545 Cation efflux family AFR_26370 PF12982 AFR_26370 AFR_26375 PF01596 O-methyltransferase AFR_26380 PF12840 Helix-turn-helix domain AFR_26390 PF03136 Pup-ligase protein AFR_26395 PF16363 AFR_26395 AFR_26400 PF00227 Proteasome subunit AFR_26405 PF00227 Proteasome subunit AFR_26410 PF05639 Pup-like protein AFR_26415 PF03136 Pup-ligase protein AFR_26420 PF00004 ATPase family associated with various cellular activities (AAA) AFR_26420 PF16450 AFR_26420 AFR_26425 PF13459 4Fe-4S single cluster domain AFR_26435 PF08704 tRNA methyltransferase complex GCD14 subunit AFR_26435 PF14801 tRNA methyltransferase complex GCD14 subunit N-term AFR_26440 PF13398 Peptidase M50B-like AFR_26445 PF12705 PD-(D/E)XK nuclease superfamily AFR_26450 PF00072 Response regulator receiver domain AFR_26450 PF00196 Bacterial regulatory proteins, luxR family AFR_26455 PF13349 AFR_26455 AFR_26460 PF05534 AFR_26460 AFR_26465 PF00005 ABC transporter AFR_26470 PF02687 AFR_26470 AFR_26470 PF12704 MacB-like periplasmic core domain AFR_26475 PF13419 Haloacid dehalogenase-like hydrolase AFR_26480 PF04228 AFR_26480 AFR_26490 PF09844 AFR_26490 AFR_26500 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_26505 PF12840 Helix-turn-helix domain AFR_26525 PF01066 CDP-alcohol phosphatidyltransferase AFR_26530 PF00156 Phosphoribosyl transferase domain AFR_26535 PF00702 haloacid dehalogenase-like hydrolase AFR_26540 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_26545 PF01810 AFR_26545 AFR_26550 PF13671 AAA domain AFR_26555 PF07730 Histidine kinase AFR_26555 PF13796 AFR_26555 AFR_26560 PF00072 Response regulator receiver domain AFR_26560 PF00196 Bacterial regulatory proteins, luxR family AFR_26565 PF00809 Pterin binding enzyme AFR_26565 PF02310 B12 binding domain AFR_26565 PF02574 Homocysteine S-methyltransferase AFR_26565 PF02607 B12 binding domain AFR_26565 PF02965 Vitamin B12 dependent methionine synthase, activation domain AFR_26570 PF09754 PAC2 family AFR_26575 PF04149 AFR_26575 AFR_26580 PF13560 Helix-turn-helix domain AFR_26590 PF02687 AFR_26590 AFR_26595 PF00005 ABC transporter AFR_26600 PF00392 Bacterial regulatory proteins, gntR family AFR_26600 PF00440 Bacterial regulatory proteins, tetR family AFR_26600 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_26610 PF08241 Methyltransferase domain AFR_26615 PF00392 Bacterial regulatory proteins, gntR family AFR_26615 PF07702 UTRA domain AFR_26620 PF01047 MarR family AFR_26625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AFR_26630 PF01406 tRNA synthetases class I (C) catalytic domain AFR_26640 PF11290 AFR_26640 AFR_26645 PF00300 Histidine phosphatase superfamily (branch 1) AFR_26650 PF00296 Luciferase-like monooxygenase AFR_26655 PF00248 Aldo/keto reductase family AFR_26665 PF11695 AFR_26665 AFR_26670 PF12840 Helix-turn-helix domain AFR_26680 PF01546 Peptidase family M20/M25/M40 AFR_26680 PF07687 Peptidase dimerisation domain AFR_26685 PF01814 Hemerythrin HHE cation binding domain AFR_26690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_26690 PF03466 LysR substrate binding domain AFR_26695 PF00004 ATPase family associated with various cellular activities (AAA) AFR_26695 PF02151 UvrB/uvrC motif AFR_26695 PF02861 Clp amino terminal domain AFR_26695 PF07724 AAA domain (Cdc48 subfamily) AFR_26695 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_26710 PF01580 FtsK/SpoIIIE family AFR_26720 PF08007 Cupin superfamily protein AFR_26730 PF01904 Protein of unknown function DUF72 AFR_26735 PF01063 Aminotransferase class IV AFR_26740 PF01904 Protein of unknown function DUF72 AFR_26745 PF01258 Prokaryotic dksA/traR C4-type zinc finger AFR_26755 PF00486 Transcriptional regulatory protein, C terminal AFR_26765 PF13637 Ankyrin repeats (many copies) AFR_26770 PF12006 AFR_26770 AFR_26775 PF01043 SecA preprotein cross-linking domain AFR_26775 PF07516 SecA Wing and Scaffold domain AFR_26775 PF07517 SecA DEAD-like domain AFR_26780 PF00005 ABC transporter AFR_26780 PF00664 ABC transporter transmembrane region AFR_26785 PF13581 Histidine kinase-like ATPase domain AFR_26790 PF01339 CheB methylesterase AFR_26795 PF00989 PAS fold AFR_26795 PF01739 CheR methyltransferase, SAM binding domain AFR_26795 PF03705 CheR methyltransferase, all-alpha domain AFR_26795 PF08448 PAS fold AFR_26800 PF13466 STAS domain AFR_26800 PF13581 Histidine kinase-like ATPase domain AFR_26805 PF04539 Sigma-70 region 3 AFR_26805 PF04542 Sigma-70 region 2 AFR_26805 PF04545 Sigma-70, region 4 AFR_26805 PF13466 STAS domain AFR_26820 PF09360 Iron-binding zinc finger CDGSH type AFR_26825 PF14518 Iron-containing redox enzyme AFR_26835 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_26840 PF00561 alpha/beta hydrolase fold AFR_26845 PF12823 AFR_26845 AFR_26855 PF13302 Acetyltransferase (GNAT) domain AFR_26870 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_26875 PF00072 Response regulator receiver domain AFR_26875 PF00196 Bacterial regulatory proteins, luxR family AFR_26880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_26880 PF07730 Histidine kinase AFR_26885 PF13560 Helix-turn-helix domain AFR_26890 PF00857 Isochorismatase family AFR_26895 PF01890 Cobalamin synthesis G C-terminus AFR_26900 PF13649 Methyltransferase domain AFR_26910 PF00440 Bacterial regulatory proteins, tetR family AFR_26915 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AFR_26915 PF07685 CobB/CobQ-like glutamine amidotransferase domain AFR_26920 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AFR_26925 PF01078 Magnesium chelatase, subunit ChlI AFR_26925 PF13519 von Willebrand factor type A domain AFR_26930 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_26930 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_26940 PF04542 Sigma-70 region 2 AFR_26940 PF08281 Sigma-70, region 4 AFR_26945 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_26950 PF01022 Bacterial regulatory protein, arsR family AFR_26955 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFR_26955 PF03033 Glycosyltransferase family 28 N-terminal domain AFR_26960 PF00285 Citrate synthase AFR_26965 PF00582 Universal stress protein family AFR_26970 PF00563 EAL domain AFR_26970 PF00990 GGDEF domain AFR_26975 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_26980 PF07228 Stage II sporulation protein E (SpoIIE) AFR_26985 PF02310 B12 binding domain AFR_26985 PF02607 B12 binding domain AFR_26995 PF13302 Acetyltransferase (GNAT) domain AFR_27000 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_27010 PF00563 EAL domain AFR_27010 PF00990 GGDEF domain AFR_27015 PF00270 DEAD/DEAH box helicase AFR_27015 PF00271 Helicase conserved C-terminal domain AFR_27015 PF04408 Helicase associated domain (HA2) AFR_27015 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AFR_27015 PF11898 AFR_27015 AFR_27020 PF00248 Aldo/keto reductase family AFR_27025 PF00072 Response regulator receiver domain AFR_27030 PF00512 His Kinase A (phospho-acceptor) domain AFR_27030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_27030 PF03924 CHASE domain AFR_27035 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AFR_27040 PF01569 PAP2 superfamily AFR_27050 PF04539 Sigma-70 region 3 AFR_27050 PF04542 Sigma-70 region 2 AFR_27050 PF04545 Sigma-70, region 4 AFR_27055 PF00563 EAL domain AFR_27055 PF00990 GGDEF domain AFR_27060 PF00082 Subtilase family AFR_27065 PF00480 ROK family AFR_27070 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_27080 PF04542 Sigma-70 region 2 AFR_27080 PF08281 Sigma-70, region 4 AFR_27095 PF11896 Domain of unknown function (DUF3416) AFR_27100 PF00128 Alpha amylase, catalytic domain AFR_27100 PF16657 AFR_27100 AFR_27110 PF00128 Alpha amylase, catalytic domain AFR_27110 PF02806 Alpha amylase, C-terminal all-beta domain AFR_27110 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_27115 PF00583 Acetyltransferase (GNAT) family AFR_27120 PF01909 Nucleotidyltransferase domain AFR_27125 PF06983 3-demethylubiquinone-9 3-methyltransferase AFR_27130 PF04237 YjbR AFR_27135 PF13302 Acetyltransferase (GNAT) domain AFR_27145 PF13672 Protein phosphatase 2C AFR_27150 PF00196 Bacterial regulatory proteins, luxR family AFR_27150 PF13191 AAA ATPase domain AFR_27155 PF00107 Zinc-binding dehydrogenase AFR_27155 PF08240 Alcohol dehydrogenase GroES-like domain AFR_27160 PF00575 S1 RNA binding domain AFR_27160 PF09371 Tex-like protein N-terminal domain AFR_27160 PF12836 Helix-hairpin-helix motif AFR_27160 PF16921 AFR_27160 AFR_27165 PF00069 Protein kinase domain AFR_27170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_27170 PF03466 LysR substrate binding domain AFR_27175 PF05762 VWA domain containing CoxE-like protein AFR_27180 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) AFR_27185 PF00004 ATPase family associated with various cellular activities (AAA) AFR_27190 PF12804 MobA-like NTP transferase domain AFR_27195 PF02625 XdhC and CoxI family AFR_27195 PF13478 XdhC Rossmann domain AFR_27200 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_27200 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFR_27205 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_27205 PF01799 [2Fe-2S] binding domain AFR_27210 PF00941 FAD binding domain in molybdopterin dehydrogenase AFR_27210 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFR_27215 PF00072 Response regulator receiver domain AFR_27215 PF00196 Bacterial regulatory proteins, luxR family AFR_27220 PF07730 Histidine kinase AFR_27230 PF00069 Protein kinase domain AFR_27235 PF02683 AFR_27235 AFR_27240 PF00578 AhpC/TSA family AFR_27245 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFR_27245 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_27245 PF13459 4Fe-4S single cluster domain AFR_27260 PF03713 Domain of unknown function (DUF305) AFR_27265 PF11937 AFR_27265 AFR_27275 PF13302 Acetyltransferase (GNAT) domain AFR_27280 PF13672 Protein phosphatase 2C AFR_27285 PF00041 Fibronectin type III domain AFR_27285 PF00415 Regulator of chromosome condensation (RCC1) repeat AFR_27285 PF13540 Regulator of chromosome condensation (RCC1) repeat AFR_27295 PF08241 Methyltransferase domain AFR_27300 PF00553 Cellulose binding domain AFR_27300 PF01341 Glycosyl hydrolases family 6 AFR_27310 PF07690 Major Facilitator Superfamily AFR_27315 PF02558 Ketopantoate reductase PanE/ApbA AFR_27320 PF00440 Bacterial regulatory proteins, tetR family AFR_27325 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_27330 PF00703 Glycosyl hydrolases family 2 AFR_27330 PF02837 Glycosyl hydrolases family 2, sugar binding domain AFR_27330 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_27335 PF03932 CutC family AFR_27340 PF01636 Phosphotransferase enzyme family AFR_27345 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_27345 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_27345 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_27350 PF00990 GGDEF domain AFR_27350 PF13185 GAF domain AFR_27355 PF00356 Bacterial regulatory proteins, lacI family AFR_27355 PF13377 Periplasmic binding protein-like domain AFR_27360 PF13416 Bacterial extracellular solute-binding protein AFR_27365 PF00528 Binding-protein-dependent transport system inner membrane component AFR_27370 PF00528 Binding-protein-dependent transport system inner membrane component AFR_27375 PF06283 Trehalose utilisation AFR_27380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_27380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_27385 PF13515 AFR_27385 AFR_27395 PF13649 Methyltransferase domain AFR_27400 PF00144 Beta-lactamase AFR_27405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_27405 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_27405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_27410 PF02091 Glycyl-tRNA synthetase alpha subunit AFR_27410 PF02092 AFR_27410 AFR_27415 PF12833 Helix-turn-helix domain AFR_27420 PF01494 FAD binding domain AFR_27425 PF08021 Siderophore-interacting FAD-binding domain AFR_27435 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_27440 PF00196 Bacterial regulatory proteins, luxR family AFR_27445 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_27445 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_27450 PF01614 Bacterial transcriptional regulator AFR_27450 PF09339 IclR helix-turn-helix domain AFR_27455 PF00230 Major intrinsic protein AFR_27460 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AFR_27460 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AFR_27465 PF01266 FAD dependent oxidoreductase AFR_27465 PF16901 AFR_27465 AFR_27470 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_27475 PF08445 FR47-like protein AFR_27485 PF00440 Bacterial regulatory proteins, tetR family AFR_27490 PF12680 SnoaL-like domain AFR_27495 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_27505 PF08818 Domain of unknown function (DU1801) AFR_27510 PF01590 GAF domain AFR_27515 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFR_27520 PF00149 Calcineurin-like phosphoesterase AFR_27525 PF11829 Protein of unknown function (DUF3349) AFR_27535 PF01384 AFR_27535 AFR_27540 PF00202 Aminotransferase class-III AFR_27545 PF00155 Aminotransferase class I and II AFR_27545 PF00392 Bacterial regulatory proteins, gntR family AFR_27550 PF00795 Carbon-nitrogen hydrolase AFR_27555 PF01979 Amidohydrolase family AFR_27560 PF00171 Aldehyde dehydrogenase family AFR_27565 PF00296 Luciferase-like monooxygenase AFR_27570 PF00528 Binding-protein-dependent transport system inner membrane component AFR_27575 PF00005 ABC transporter AFR_27580 PF00528 Binding-protein-dependent transport system inner membrane component AFR_27585 PF09084 NMT1/THI5 like AFR_27590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_27600 PF00801 PKD domain AFR_27600 PF07995 Glucose / Sorbosone dehydrogenase AFR_27605 PF01261 Xylose isomerase-like TIM barrel AFR_27610 PF00563 EAL domain AFR_27610 PF00990 GGDEF domain AFR_27625 PF00480 ROK family AFR_27630 PF13407 Periplasmic binding protein domain AFR_27635 PF02653 AFR_27635 AFR_27640 PF00005 ABC transporter AFR_27645 PF03176 MMPL family AFR_27650 PF00440 Bacterial regulatory proteins, tetR family AFR_27655 PF01047 MarR family AFR_27660 PF00005 ABC transporter AFR_27660 PF00664 ABC transporter transmembrane region AFR_27665 PF00512 His Kinase A (phospho-acceptor) domain AFR_27665 PF00672 HAMP domain AFR_27665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_27670 PF00072 Response regulator receiver domain AFR_27670 PF00486 Transcriptional regulatory protein, C terminal AFR_27685 PF00005 ABC transporter AFR_27690 PF02687 AFR_27690 AFR_27690 PF12704 MacB-like periplasmic core domain AFR_27695 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_27705 PF13546 AFR_27705 AFR_27710 PF00089 Trypsin AFR_27715 PF00392 Bacterial regulatory proteins, gntR family AFR_27725 PF00501 AMP-binding enzyme AFR_27725 PF13193 AMP-binding enzyme C-terminal domain AFR_27725 PF16177 AFR_27725 AFR_27730 PF00128 Alpha amylase, catalytic domain AFR_27730 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_27730 PF03714 Bacterial pullanase-associated domain AFR_27730 PF11852 Domain of unknown function (DUF3372) AFR_27735 PF00128 Alpha amylase, catalytic domain AFR_27735 PF14078 AFR_27735 AFR_27745 PF04954 Siderophore-interacting protein AFR_27745 PF08021 Siderophore-interacting FAD-binding domain AFR_27755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_27755 PF14759 Reductase C-terminal AFR_27765 PF00890 FAD binding domain AFR_27770 PF03706 AFR_27770 AFR_27775 PF00384 Molybdopterin oxidoreductase AFR_27775 PF01568 Molydopterin dinucleotide binding domain AFR_27780 PF00171 Aldehyde dehydrogenase family AFR_27785 PF00202 Aminotransferase class-III AFR_27790 PF03435 Saccharopine dehydrogenase AFR_27790 PF16653 AFR_27790 AFR_27795 PF01037 AsnC family AFR_27795 PF13404 AsnC-type helix-turn-helix domain AFR_27800 PF00202 Aminotransferase class-III AFR_27805 PF01266 FAD dependent oxidoreductase AFR_27810 PF13460 NADH(P)-binding AFR_27820 PF00069 Protein kinase domain AFR_27820 PF00652 Ricin-type beta-trefoil lectin domain AFR_27830 PF00392 Bacterial regulatory proteins, gntR family AFR_27845 PF00657 GDSL-like Lipase/Acylhydrolase AFR_27850 PF04616 Glycosyl hydrolases family 43 AFR_27850 PF05270 Alpha-L-arabinofuranosidase B (ABFB) AFR_27855 PF00144 Beta-lactamase AFR_27865 PF00561 alpha/beta hydrolase fold AFR_27870 PF13302 Acetyltransferase (GNAT) domain AFR_27875 PF00534 Glycosyl transferases group 1 AFR_27875 PF13439 Glycosyltransferase Family 4 AFR_27895 PF02515 CoA-transferase family III AFR_27900 PF06314 Acetoacetate decarboxylase (ADC) AFR_27910 PF13578 Methyltransferase domain AFR_27915 PF00144 Beta-lactamase AFR_27920 PF13560 Helix-turn-helix domain AFR_27925 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_27930 PF00069 Protein kinase domain AFR_27935 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_27945 PF00009 Elongation factor Tu GTP binding domain AFR_27945 PF03144 Elongation factor Tu domain 2 AFR_27945 PF09106 Elongation factor SelB, winged helix AFR_27945 PF09107 Elongation factor SelB, winged helix AFR_27950 PF03841 L-seryl-tRNA selenium transferase AFR_27950 PF12390 AFR_27950 AFR_27955 PF00586 AIR synthase related protein, N-terminal domain AFR_27955 PF02769 AIR synthase related protein, C-terminal domain AFR_27960 PF14589 Polysulfide reductase AFR_27965 PF13247 4Fe-4S dicluster domain AFR_27970 PF00384 Molybdopterin oxidoreductase AFR_27970 PF01568 Molydopterin dinucleotide binding domain AFR_27975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AFR_27980 PF03861 ANTAR domain AFR_27980 PF13185 GAF domain AFR_27985 PF03861 ANTAR domain AFR_27990 PF00501 AMP-binding enzyme AFR_27990 PF13193 AMP-binding enzyme C-terminal domain AFR_28000 PF13459 4Fe-4S single cluster domain AFR_28005 PF00067 Cytochrome P450 AFR_28010 PF02210 Laminin G domain AFR_28015 PF04471 Restriction endonuclease AFR_28015 PF14338 AFR_28015 AFR_28020 PF01494 FAD binding domain AFR_28025 PF00440 Bacterial regulatory proteins, tetR family AFR_28030 PF00296 Luciferase-like monooxygenase AFR_28035 PF00563 EAL domain AFR_28035 PF00990 GGDEF domain AFR_28035 PF08447 PAS fold AFR_28045 PF03176 MMPL family AFR_28055 PF03088 Strictosidine synthase AFR_28065 PF00144 Beta-lactamase AFR_28070 PF03583 Secretory lipase AFR_28080 PF07920 Protein of unknown function (DUF1684) AFR_28110 PF00246 Zinc carboxypeptidase AFR_28115 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFR_28120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28120 PF08376 Nitrate and nitrite sensing AFR_28125 PF03259 Roadblock/LC7 domain AFR_28130 PF05331 AFR_28130 AFR_28135 PF03029 Conserved hypothetical ATP binding protein AFR_28140 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFR_28145 PF00990 GGDEF domain AFR_28180 PF05656 AFR_28180 AFR_28190 PF00069 Protein kinase domain AFR_28195 PF01841 Transglutaminase-like superfamily AFR_28200 PF01882 AFR_28200 AFR_28205 PF07726 ATPase family associated with various cellular activities (AAA) AFR_28210 PF00041 Fibronectin type III domain AFR_28215 PF00512 His Kinase A (phospho-acceptor) domain AFR_28215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28220 PF00072 Response regulator receiver domain AFR_28220 PF00486 Transcriptional regulatory protein, C terminal AFR_28225 PF00486 Transcriptional regulatory protein, C terminal AFR_28225 PF00931 NB-ARC domain AFR_28225 PF03704 Bacterial transcriptional activator domain AFR_28230 PF00196 Bacterial regulatory proteins, luxR family AFR_28235 PF00072 Response regulator receiver domain AFR_28235 PF00486 Transcriptional regulatory protein, C terminal AFR_28240 PF01638 HxlR-like helix-turn-helix AFR_28245 PF07690 Major Facilitator Superfamily AFR_28255 PF04237 YjbR AFR_28260 PF00041 Fibronectin type III domain AFR_28260 PF00553 Cellulose binding domain AFR_28265 PF04542 Sigma-70 region 2 AFR_28265 PF08281 Sigma-70, region 4 AFR_28275 PF02696 AFR_28275 AFR_28295 PF13360 PQQ-like domain AFR_28300 PF01145 SPFH domain / Band 7 family AFR_28305 PF07690 Major Facilitator Superfamily AFR_28310 PF00704 Glycosyl hydrolases family 18 AFR_28315 PF00563 EAL domain AFR_28315 PF13632 Glycosyl transferase family group 2 AFR_28320 PF00440 Bacterial regulatory proteins, tetR family AFR_28325 PF00144 Beta-lactamase AFR_28330 PF00583 Acetyltransferase (GNAT) family AFR_28340 PF00196 Bacterial regulatory proteins, luxR family AFR_28340 PF13191 AAA ATPase domain AFR_28355 PF13466 STAS domain AFR_28360 PF00171 Aldehyde dehydrogenase family AFR_28365 PF00067 Cytochrome P450 AFR_28370 PF13466 STAS domain AFR_28375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_28375 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_28375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_28380 PF07287 AFR_28380 AFR_28385 PF01039 Carboxyl transferase domain AFR_28390 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFR_28390 PF00364 Biotin-requiring enzyme AFR_28390 PF02785 Biotin carboxylase C-terminal domain AFR_28390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_28395 PF00440 Bacterial regulatory proteins, tetR family AFR_28415 PF12706 Beta-lactamase superfamily domain AFR_28425 PF10025 Uncharacterized conserved protein (DUF2267) AFR_28430 PF00884 Sulfatase AFR_28435 PF05239 PRC-barrel domain AFR_28440 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_28445 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFR_28445 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_28450 PF01055 Glycosyl hydrolases family 31 AFR_28450 PF16990 AFR_28450 AFR_28460 PF14430 AFR_28460 AFR_28470 PF13474 SnoaL-like domain AFR_28475 PF04542 Sigma-70 region 2 AFR_28475 PF08281 Sigma-70, region 4 AFR_28475 PF12680 SnoaL-like domain AFR_28480 PF00069 Protein kinase domain AFR_28480 PF00990 GGDEF domain AFR_28480 PF01590 GAF domain AFR_28480 PF13191 AAA ATPase domain AFR_28485 PF00652 Ricin-type beta-trefoil lectin domain AFR_28485 PF10566 Glycoside hydrolase 97 AFR_28485 PF14508 Glycosyl-hydrolase 97 N-terminal AFR_28485 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AFR_28490 PF00652 Ricin-type beta-trefoil lectin domain AFR_28490 PF07995 Glucose / Sorbosone dehydrogenase AFR_28500 PF00512 His Kinase A (phospho-acceptor) domain AFR_28500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28505 PF00072 Response regulator receiver domain AFR_28505 PF00486 Transcriptional regulatory protein, C terminal AFR_28510 PF00089 Trypsin AFR_28515 PF12840 Helix-turn-helix domain AFR_28520 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_28525 PF01872 RibD C-terminal domain AFR_28530 PF00881 Nitroreductase family AFR_28535 PF01841 Transglutaminase-like superfamily AFR_28540 PF08240 Alcohol dehydrogenase GroES-like domain AFR_28545 PF07883 Cupin domain AFR_28550 PF12833 Helix-turn-helix domain AFR_28550 PF14525 AFR_28550 AFR_28560 PF07366 SnoaL-like polyketide cyclase AFR_28565 PF00440 Bacterial regulatory proteins, tetR family AFR_28570 PF01068 ATP dependent DNA ligase domain AFR_28570 PF04679 ATP dependent DNA ligase C terminal region AFR_28575 PF00440 Bacterial regulatory proteins, tetR family AFR_28575 PF13977 Bacterial transcriptional repressor AFR_28580 PF12697 Alpha/beta hydrolase family AFR_28585 PF07228 Stage II sporulation protein E (SpoIIE) AFR_28595 PF02687 AFR_28595 AFR_28595 PF12704 MacB-like periplasmic core domain AFR_28600 PF00005 ABC transporter AFR_28605 PF01471 Putative peptidoglycan binding domain AFR_28605 PF13437 HlyD family secretion protein AFR_28610 PF00072 Response regulator receiver domain AFR_28610 PF00486 Transcriptional regulatory protein, C terminal AFR_28615 PF00512 His Kinase A (phospho-acceptor) domain AFR_28615 PF00672 HAMP domain AFR_28615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28620 PF00512 His Kinase A (phospho-acceptor) domain AFR_28620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28625 PF00072 Response regulator receiver domain AFR_28625 PF00486 Transcriptional regulatory protein, C terminal AFR_28630 PF04188 AFR_28630 AFR_28635 PF00535 Glycosyl transferase family 2 AFR_28640 PF12728 Helix-turn-helix domain AFR_28655 PF12158 AFR_28655 AFR_28660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_28665 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_28670 PF12697 Alpha/beta hydrolase family AFR_28675 PF00392 Bacterial regulatory proteins, gntR family AFR_28675 PF07729 FCD domain AFR_28680 PF00656 Caspase domain AFR_28690 PF01936 NYN domain AFR_28700 PF13581 Histidine kinase-like ATPase domain AFR_28705 PF00072 Response regulator receiver domain AFR_28705 PF00512 His Kinase A (phospho-acceptor) domain AFR_28705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_28705 PF13426 PAS domain AFR_28710 PF00149 Calcineurin-like phosphoesterase AFR_28715 PF00106 short chain dehydrogenase AFR_28720 PF13560 Helix-turn-helix domain AFR_28725 PF13601 Winged helix DNA-binding domain AFR_28745 PF00107 Zinc-binding dehydrogenase AFR_28745 PF08240 Alcohol dehydrogenase GroES-like domain AFR_28760 PF00083 Sugar (and other) transporter AFR_28765 PF01757 AFR_28765 AFR_28770 PF00072 Response regulator receiver domain AFR_28770 PF00196 Bacterial regulatory proteins, luxR family AFR_28775 PF07730 Histidine kinase AFR_28780 PF00069 Protein kinase domain AFR_28800 PF00196 Bacterial regulatory proteins, luxR family AFR_28805 PF00561 alpha/beta hydrolase fold AFR_28815 PF00005 ABC transporter AFR_28825 PF07730 Histidine kinase AFR_28830 PF00072 Response regulator receiver domain AFR_28830 PF00196 Bacterial regulatory proteins, luxR family AFR_28835 PF13411 MerR HTH family regulatory protein AFR_28840 PF06772 AFR_28840 AFR_28845 PF12697 Alpha/beta hydrolase family AFR_28850 PF01047 MarR family AFR_28855 PF12680 SnoaL-like domain AFR_28865 PF00561 alpha/beta hydrolase fold AFR_28870 PF00005 ABC transporter AFR_28875 PF01061 AFR_28875 AFR_28880 PF08240 Alcohol dehydrogenase GroES-like domain AFR_28880 PF13602 Zinc-binding dehydrogenase AFR_28885 PF14542 GCN5-related N-acetyl-transferase AFR_28890 PF05448 Acetyl xylan esterase (AXE1) AFR_28895 PF12802 MarR family AFR_28900 PF13411 MerR HTH family regulatory protein AFR_28905 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_28910 PF00440 Bacterial regulatory proteins, tetR family AFR_28920 PF00196 Bacterial regulatory proteins, luxR family AFR_28920 PF13191 AAA ATPase domain AFR_28935 PF02517 CAAX protease self-immunity AFR_28940 PF00561 alpha/beta hydrolase fold AFR_28945 PF15956 AFR_28945 AFR_28950 PF01590 GAF domain AFR_28950 PF07730 Histidine kinase AFR_28955 PF01590 GAF domain AFR_28955 PF07730 Histidine kinase AFR_28960 PF00072 Response regulator receiver domain AFR_28960 PF00196 Bacterial regulatory proteins, luxR family AFR_28965 PF00072 Response regulator receiver domain AFR_28970 PF00561 alpha/beta hydrolase fold AFR_28975 PF00561 alpha/beta hydrolase fold AFR_28980 PF07883 Cupin domain AFR_28985 PF12697 Alpha/beta hydrolase family AFR_28990 PF00561 alpha/beta hydrolase fold AFR_28995 PF03595 Voltage-dependent anion channel AFR_29000 PF00106 short chain dehydrogenase AFR_29005 PF08241 Methyltransferase domain AFR_29010 PF00561 alpha/beta hydrolase fold AFR_29015 PF13463 Winged helix DNA-binding domain AFR_29020 PF03631 AFR_29020 AFR_29025 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFR_29030 PF13181 Tetratricopeptide repeat AFR_29035 PF01590 GAF domain AFR_29045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_29045 PF12729 AFR_29045 AFR_29050 PF09335 AFR_29050 AFR_29060 PF15892 AFR_29060 AFR_29065 PF00069 Protein kinase domain AFR_29070 PF00069 Protein kinase domain AFR_29075 PF03422 Carbohydrate binding module (family 6) AFR_29075 PF09362 AFR_29075 AFR_29080 PF08543 Phosphomethylpyrimidine kinase AFR_29085 PF00392 Bacterial regulatory proteins, gntR family AFR_29085 PF07729 FCD domain AFR_29090 PF00248 Aldo/keto reductase family AFR_29095 PF04909 Amidohydrolase AFR_29100 PF05336 Domain of unknown function (DUF718) AFR_29105 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AFR_29105 PF13378 Enolase C-terminal domain-like AFR_29110 PF00528 Binding-protein-dependent transport system inner membrane component AFR_29115 PF00528 Binding-protein-dependent transport system inner membrane component AFR_29120 PF01547 Bacterial extracellular solute-binding protein AFR_29125 PF00107 Zinc-binding dehydrogenase AFR_29125 PF08240 Alcohol dehydrogenase GroES-like domain AFR_29130 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_29135 PF01638 HxlR-like helix-turn-helix AFR_29140 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_29150 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_29155 PF12833 Helix-turn-helix domain AFR_29155 PF12852 Cupin AFR_29160 PF00652 Ricin-type beta-trefoil lectin domain AFR_29160 PF02057 Glycosyl hydrolase family 59 AFR_29160 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_29165 PF00652 Ricin-type beta-trefoil lectin domain AFR_29165 PF16499 AFR_29165 AFR_29170 PF00652 Ricin-type beta-trefoil lectin domain AFR_29170 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_29175 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) AFR_29175 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_29180 PF00652 Ricin-type beta-trefoil lectin domain AFR_29185 PF02018 Carbohydrate binding domain AFR_29185 PF03422 Carbohydrate binding module (family 6) AFR_29185 PF04616 Glycosyl hydrolases family 43 AFR_29190 PF04616 Glycosyl hydrolases family 43 AFR_29190 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_29195 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_29195 PF00652 Ricin-type beta-trefoil lectin domain AFR_29200 PF00652 Ricin-type beta-trefoil lectin domain AFR_29200 PF00801 PKD domain AFR_29200 PF03422 Carbohydrate binding module (family 6) AFR_29200 PF07995 Glucose / Sorbosone dehydrogenase AFR_29205 PF00652 Ricin-type beta-trefoil lectin domain AFR_29205 PF06283 Trehalose utilisation AFR_29205 PF06439 Domain of Unknown Function (DUF1080) AFR_29210 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_29210 PF14498 Glycosyl hydrolase family 65, N-terminal domain AFR_29215 PF12697 Alpha/beta hydrolase family AFR_29220 PF00005 ABC transporter AFR_29220 PF00664 ABC transporter transmembrane region AFR_29230 PF03621 MbtH-like protein AFR_29235 PF00501 AMP-binding enzyme AFR_29235 PF00550 Phosphopantetheine attachment site AFR_29235 PF00668 Condensation domain AFR_29235 PF00975 Thioesterase domain AFR_29235 PF13193 AMP-binding enzyme C-terminal domain AFR_29240 PF12706 Beta-lactamase superfamily domain AFR_29250 PF01738 Dienelactone hydrolase family AFR_29260 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_29265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_29265 PF03466 LysR substrate binding domain AFR_29270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_29270 PF03466 LysR substrate binding domain AFR_29275 PF00106 short chain dehydrogenase AFR_29280 PF00390 Malic enzyme, N-terminal domain AFR_29280 PF03949 Malic enzyme, NAD binding domain AFR_29285 PF00206 Lyase AFR_29285 PF10415 Fumarase C C-terminus AFR_29290 PF01965 DJ-1/PfpI family AFR_29295 PF01425 Amidase AFR_29300 PF13460 NADH(P)-binding AFR_29305 PF00440 Bacterial regulatory proteins, tetR family AFR_29305 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_29315 PF12697 Alpha/beta hydrolase family AFR_29320 PF12833 Helix-turn-helix domain AFR_29325 PF07366 SnoaL-like polyketide cyclase AFR_29330 PF07690 Major Facilitator Superfamily AFR_29345 PF00440 Bacterial regulatory proteins, tetR family AFR_29350 PF12680 SnoaL-like domain AFR_29355 PF02366 AFR_29355 AFR_29355 PF16192 AFR_29355 AFR_29360 PF00440 Bacterial regulatory proteins, tetR family AFR_29360 PF13305 WHG domain AFR_29365 PF16571 AFR_29365 AFR_29370 PF01494 FAD binding domain AFR_29375 PF01385 AFR_29375 AFR_29375 PF07282 AFR_29375 AFR_29375 PF12323 AFR_29375 AFR_29380 PF01797 Transposase IS200 like AFR_29385 PF12146 Putative lysophospholipase AFR_29390 PF04909 Amidohydrolase AFR_29395 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_29405 PF02687 AFR_29405 AFR_29405 PF12704 MacB-like periplasmic core domain AFR_29410 PF00005 ABC transporter AFR_29420 PF00072 Response regulator receiver domain AFR_29420 PF00486 Transcriptional regulatory protein, C terminal AFR_29425 PF00512 His Kinase A (phospho-acceptor) domain AFR_29425 PF00672 HAMP domain AFR_29425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_29430 PF09234 Domain of unknown function (DUF1963) AFR_29435 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_29435 PF00175 Oxidoreductase NAD-binding domain AFR_29435 PF00970 Oxidoreductase FAD-binding domain AFR_29435 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_29440 PF00440 Bacterial regulatory proteins, tetR family AFR_29445 PF13577 SnoaL-like domain AFR_29450 PF00931 NB-ARC domain AFR_29450 PF03704 Bacterial transcriptional activator domain AFR_29455 PF01565 FAD binding domain AFR_29455 PF08031 Berberine and berberine like AFR_29460 PF07366 SnoaL-like polyketide cyclase AFR_29465 PF12802 MarR family AFR_29470 PF00440 Bacterial regulatory proteins, tetR family AFR_29475 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_29480 PF02678 Pirin AFR_29480 PF05726 Pirin C-terminal cupin domain AFR_29485 PF09234 Domain of unknown function (DUF1963) AFR_29490 PF00754 F5/8 type C domain AFR_29500 PF05977 Transmembrane secretion effector AFR_29505 PF07859 alpha/beta hydrolase fold AFR_29515 PF00589 Phage integrase family AFR_29520 PF10592 AFR_29520 AFR_29525 PF01935 Domain of unknown function DUF87 AFR_29545 PF04542 Sigma-70 region 2 AFR_29555 PF13091 PLD-like domain AFR_29565 PF13086 AAA domain AFR_29565 PF13087 AAA domain AFR_29570 PF09670 AFR_29570 AFR_29575 PF00270 DEAD/DEAH box helicase AFR_29575 PF00271 Helicase conserved C-terminal domain AFR_29580 PF10923 AFR_29580 AFR_29585 PF08665 AFR_29585 AFR_29590 PF04465 AFR_29590 AFR_29595 PF03235 AFR_29595 AFR_29615 PF00069 Protein kinase domain AFR_29615 PF08378 AFR_29615 AFR_29620 PF01926 50S ribosome-binding GTPase AFR_29620 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AFR_29625 PF02224 Cytidylate kinase AFR_29630 PF00849 RNA pseudouridylate synthase AFR_29630 PF01479 S4 domain AFR_29635 PF04079 Putative transcriptional regulators (Ypuh-like) AFR_29640 PF02616 ScpA/B protein AFR_29645 PF01636 Phosphotransferase enzyme family AFR_29650 PF13419 Haloacid dehalogenase-like hydrolase AFR_29660 PF04672 S-adenosyl methyltransferase AFR_29670 PF00293 NUDIX domain AFR_29675 PF01063 Aminotransferase class IV AFR_29680 PF13328 HD domain AFR_29700 PF00571 CBS domain AFR_29705 PF04326 Divergent AAA domain AFR_29710 PF10049 AFR_29710 AFR_29720 PF01556 DnaJ C terminal domain AFR_29725 PF05908 Protein of unknown function (DUF867) AFR_29730 PF09594 AFR_29730 AFR_29735 PF00440 Bacterial regulatory proteins, tetR family AFR_29740 PF00107 Zinc-binding dehydrogenase AFR_29745 PF01047 MarR family AFR_29760 PF05368 NmrA-like family AFR_29765 PF00440 Bacterial regulatory proteins, tetR family AFR_29770 PF01047 MarR family AFR_29775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_29790 PF01467 Cytidylyltransferase AFR_29815 PF03992 Antibiotic biosynthesis monooxygenase AFR_29825 PF14078 AFR_29825 AFR_29840 PF01841 Transglutaminase-like superfamily AFR_29855 PF00535 Glycosyl transferase family 2 AFR_29860 PF02698 DUF218 domain AFR_29870 PF13614 AAA domain AFR_29875 PF00589 Phage integrase family AFR_29875 PF02899 Phage integrase, N-terminal SAM-like domain AFR_29880 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AFR_29880 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AFR_29885 PF00296 Luciferase-like monooxygenase AFR_29885 PF01385 AFR_29885 AFR_29885 PF07282 AFR_29885 AFR_29885 PF12323 AFR_29885 AFR_29890 PF00293 NUDIX domain AFR_29895 PF00117 Glutamine amidotransferase class-I AFR_29895 PF06418 CTP synthase N-terminus AFR_29905 PF00534 Glycosyl transferases group 1 AFR_29905 PF13579 Glycosyl transferase 4-like domain AFR_29910 PF03023 AFR_29910 AFR_29920 PF11382 AFR_29920 AFR_29925 PF12555 AFR_29925 AFR_29930 PF01385 AFR_29930 AFR_29930 PF07282 AFR_29930 AFR_29935 PF02463 RecF/RecN/SMC N terminal domain AFR_29940 PF01513 ATP-NAD kinase AFR_29945 PF01479 S4 domain AFR_29945 PF01728 FtsJ-like methyltransferase AFR_29960 PF02036 SCP-2 sterol transfer family AFR_29965 PF00005 ABC transporter AFR_29970 PF12730 AFR_29970 AFR_29975 PF07730 Histidine kinase AFR_29980 PF00072 Response regulator receiver domain AFR_29980 PF00196 Bacterial regulatory proteins, luxR family AFR_29985 PF13242 HAD-hyrolase-like AFR_29985 PF13344 Haloacid dehalogenase-like hydrolase AFR_30000 PF00579 tRNA synthetases class I (W and Y) AFR_30015 PF03976 Polyphosphate kinase 2 (PPK2) AFR_30020 PF00406 Adenylate kinase AFR_30020 PF05191 Adenylate kinase, active site lid AFR_30030 PF02452 PemK-like protein AFR_30045 PF00188 Cysteine-rich secretory protein family AFR_30050 PF03793 PASTA domain AFR_30055 PF02245 Methylpurine-DNA glycosylase (MPG) AFR_30070 PF00754 F5/8 type C domain AFR_30070 PF07971 Glycosyl hydrolase family 92 AFR_30075 PF12680 SnoaL-like domain AFR_30080 PF01256 Carbohydrate kinase AFR_30085 PF00300 Histidine phosphatase superfamily (branch 1) AFR_30095 PF13416 Bacterial extracellular solute-binding protein AFR_30100 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30105 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30110 PF06964 Alpha-L-arabinofuranosidase C-terminus AFR_30115 PF02080 TrkA-C domain AFR_30120 PF07730 Histidine kinase AFR_30125 PF00072 Response regulator receiver domain AFR_30125 PF00196 Bacterial regulatory proteins, luxR family AFR_30130 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFR_30130 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AFR_30130 PF04039 AFR_30130 AFR_30130 PF13244 AFR_30130 AFR_30135 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AFR_30140 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains AFR_30145 PF01899 AFR_30145 AFR_30150 PF04066 AFR_30150 AFR_30155 PF03334 AFR_30155 AFR_30160 PF00149 Calcineurin-like phosphoesterase AFR_30180 PF13419 Haloacid dehalogenase-like hydrolase AFR_30185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_30185 PF03466 LysR substrate binding domain AFR_30190 PF01925 AFR_30190 AFR_30200 PF13614 AAA domain AFR_30205 PF00206 Lyase AFR_30205 PF14698 Argininosuccinate lyase C-terminal AFR_30210 PF00764 Arginosuccinate synthase AFR_30220 PF01316 Arginine repressor, DNA binding domain AFR_30220 PF02863 Arginine repressor, C-terminal domain AFR_30225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFR_30225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFR_30230 PF00202 Aminotransferase class-III AFR_30235 PF00696 Amino acid kinase family AFR_30240 PF01960 ArgJ family AFR_30245 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFR_30245 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFR_30270 PF00027 Cyclic nucleotide-binding domain AFR_30270 PF13545 Crp-like helix-turn-helix domain AFR_30275 PF11139 AFR_30275 AFR_30280 PF13560 Helix-turn-helix domain AFR_30285 PF00440 Bacterial regulatory proteins, tetR family AFR_30290 PF00067 Cytochrome P450 AFR_30295 PF13370 4Fe-4S single cluster domain AFR_30300 PF12730 AFR_30300 AFR_30305 PF00005 ABC transporter AFR_30310 PF07730 Histidine kinase AFR_30315 PF00072 Response regulator receiver domain AFR_30315 PF00196 Bacterial regulatory proteins, luxR family AFR_30325 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_30325 PF01915 Glycosyl hydrolase family 3 C-terminal domain AFR_30325 PF14310 Fibronectin type III-like domain AFR_30330 PF01636 Phosphotransferase enzyme family AFR_30335 PF01370 NAD dependent epimerase/dehydratase family AFR_30340 PF00365 Phosphofructokinase AFR_30345 PF08445 FR47-like protein AFR_30350 PF02698 DUF218 domain AFR_30355 PF00005 ABC transporter AFR_30360 PF02687 AFR_30360 AFR_30365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_30365 PF07730 Histidine kinase AFR_30365 PF13796 AFR_30365 AFR_30370 PF00072 Response regulator receiver domain AFR_30370 PF00196 Bacterial regulatory proteins, luxR family AFR_30375 PF13354 Beta-lactamase enzyme family AFR_30385 PF00392 Bacterial regulatory proteins, gntR family AFR_30390 PF00005 ABC transporter AFR_30395 PF12679 AFR_30395 AFR_30410 PF04389 Peptidase family M28 AFR_30415 PF08241 Methyltransferase domain AFR_30420 PF03992 Antibiotic biosynthesis monooxygenase AFR_30425 PF04978 Protein of unknown function (DUF664) AFR_30430 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_30435 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase AFR_30440 PF01588 Putative tRNA binding domain AFR_30440 PF03147 Ferredoxin-fold anticodon binding domain AFR_30440 PF03483 B3/4 domain AFR_30440 PF03484 tRNA synthetase B5 domain AFR_30445 PF01409 tRNA synthetases class II core domain (F) AFR_30445 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AFR_30450 PF00588 SpoU rRNA Methylase family AFR_30450 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFR_30455 PF00453 Ribosomal protein L20 AFR_30460 PF01632 Ribosomal protein L35 AFR_30465 PF00707 Translation initiation factor IF-3, C-terminal domain AFR_30465 PF05198 Translation initiation factor IF-3, N-terminal domain AFR_30470 PF10756 AFR_30470 AFR_30475 PF01634 ATP phosphoribosyltransferase AFR_30475 PF08029 HisG, C-terminal domain AFR_30480 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AFR_30485 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_30490 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30495 PF00005 ABC transporter AFR_30500 PF07995 Glucose / Sorbosone dehydrogenase AFR_30505 PF00885 6,7-dimethyl-8-ribityllumazine synthase AFR_30510 PF00925 GTP cyclohydrolase II AFR_30510 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AFR_30515 PF00677 Lumazine binding domain AFR_30520 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFR_30520 PF01872 RibD C-terminal domain AFR_30525 PF00072 Response regulator receiver domain AFR_30525 PF00990 GGDEF domain AFR_30530 PF00834 Ribulose-phosphate 3 epimerase family AFR_30535 PF13845 AFR_30535 AFR_30545 PF01029 NusB family AFR_30545 PF01189 NOL1/NOP2/sun family AFR_30550 PF00551 Formyl transferase AFR_30550 PF02911 Formyl transferase, C-terminal domain AFR_30555 PF01327 Polypeptide deformylase AFR_30560 PF00067 Cytochrome P450 AFR_30565 PF13449 Esterase-like activity of phytase AFR_30575 PF00438 S-adenosylmethionine synthetase, N-terminal domain AFR_30575 PF02772 S-adenosylmethionine synthetase, central domain AFR_30575 PF02773 S-adenosylmethionine synthetase, C-terminal domain AFR_30580 PF02441 Flavoprotein AFR_30580 PF04127 DNA / pantothenate metabolism flavoprotein AFR_30585 PF01192 RNA polymerase Rpb6 AFR_30590 PF00625 Guanylate kinase AFR_30600 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AFR_30605 PF00202 Aminotransferase class-III AFR_30610 PF01180 Dihydroorotate dehydrogenase AFR_30615 PF02142 MGS-like domain AFR_30615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_30615 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFR_30620 PF00117 Glutamine amidotransferase class-I AFR_30620 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AFR_30625 PF01979 Amidohydrolase family AFR_30630 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AFR_30630 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AFR_30635 PF00156 Phosphoribosyl transferase domain AFR_30640 PF01381 Helix-turn-helix AFR_30645 PF01029 NusB family AFR_30650 PF01132 Elongation factor P (EF-P) OB domain AFR_30650 PF08207 Elongation factor P (EF-P) KOW-like domain AFR_30650 PF09285 Elongation factor P, C-terminal AFR_30655 PF01220 Dehydroquinase class II AFR_30660 PF01761 3-dehydroquinate synthase AFR_30665 PF02861 Clp amino terminal domain AFR_30670 PF08279 HTH domain AFR_30670 PF13280 AFR_30670 AFR_30675 PF12697 Alpha/beta hydrolase family AFR_30680 PF01202 Shikimate kinase AFR_30685 PF01264 Chorismate synthase AFR_30690 PF07690 Major Facilitator Superfamily AFR_30695 PF08501 Shikimate dehydrogenase substrate binding domain AFR_30700 PF02618 YceG-like family AFR_30705 PF03652 Uncharacterised protein family (UPF0081) AFR_30710 PF01411 tRNA synthetases class II (A) AFR_30710 PF02272 DHHA1 domain AFR_30710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFR_30720 PF06103 AFR_30720 AFR_30740 PF00004 ATPase family associated with various cellular activities (AAA) AFR_30740 PF12002 MgsA AAA+ ATPase C terminal AFR_30740 PF16193 AFR_30740 AFR_30750 PF07690 Major Facilitator Superfamily AFR_30755 PF12840 Helix-turn-helix domain AFR_30760 PF00583 Acetyltransferase (GNAT) family AFR_30765 PF07077 AFR_30765 AFR_30770 PF14027 AFR_30770 AFR_30775 PF00512 His Kinase A (phospho-acceptor) domain AFR_30775 PF00672 HAMP domain AFR_30775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_30780 PF00072 Response regulator receiver domain AFR_30780 PF00486 Transcriptional regulatory protein, C terminal AFR_30785 PF00005 ABC transporter AFR_30790 PF12679 AFR_30790 AFR_30800 PF04321 RmlD substrate binding domain AFR_30805 PF00152 tRNA synthetases class II (D, K and N) AFR_30805 PF01336 OB-fold nucleic acid binding domain AFR_30805 PF02938 GAD domain AFR_30825 PF01037 AsnC family AFR_30825 PF13404 AsnC-type helix-turn-helix domain AFR_30830 PF07690 Major Facilitator Superfamily AFR_30835 PF04029 2-phosphosulpholactate phosphatase AFR_30850 PF01814 Hemerythrin HHE cation binding domain AFR_30855 PF12688 Tetratrico peptide repeat AFR_30860 PF00728 Glycosyl hydrolase family 20, catalytic domain AFR_30860 PF02838 Glycosyl hydrolase family 20, domain 2 AFR_30865 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30870 PF00528 Binding-protein-dependent transport system inner membrane component AFR_30875 PF13416 Bacterial extracellular solute-binding protein AFR_30880 PF01168 Alanine racemase, N-terminal domain AFR_30880 PF14031 Putative serine dehydratase domain AFR_30890 PF01979 Amidohydrolase family AFR_30895 PF01042 Endoribonuclease L-PSP AFR_30905 PF00547 Urease, gamma subunit AFR_30910 PF00699 Urease beta subunit AFR_30915 PF00449 Urease alpha-subunit, N-terminal domain AFR_30915 PF01979 Amidohydrolase family AFR_30920 PF01730 UreF AFR_30925 PF02492 CobW/HypB/UreG, nucleotide-binding domain AFR_30930 PF01774 UreD urease accessory protein AFR_30935 PF04539 Sigma-70 region 3 AFR_30935 PF04542 Sigma-70 region 2 AFR_30935 PF04545 Sigma-70, region 4 AFR_30945 PF00069 Protein kinase domain AFR_30945 PF00553 Cellulose binding domain AFR_30950 PF02875 Mur ligase family, glutamate ligase domain AFR_30950 PF08245 Mur ligase middle domain AFR_30950 PF08443 RimK-like ATP-grasp domain AFR_30955 PF03575 Peptidase family S51 AFR_30960 PF05977 Transmembrane secretion effector AFR_30965 PF01638 HxlR-like helix-turn-helix AFR_30970 PF03061 Thioesterase superfamily AFR_30975 PF00005 ABC transporter AFR_30980 PF00005 ABC transporter AFR_30980 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFR_30985 PF02653 AFR_30985 AFR_30990 PF02653 AFR_30990 AFR_30995 PF13433 Periplasmic binding protein domain AFR_31005 PF00106 short chain dehydrogenase AFR_31010 PF00440 Bacterial regulatory proteins, tetR family AFR_31015 PF03129 Anticodon binding domain AFR_31015 PF13393 Histidyl-tRNA synthetase AFR_31020 PF00753 Metallo-beta-lactamase superfamily AFR_31025 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFR_31030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFR_31035 PF02824 TGS domain AFR_31035 PF04607 Region found in RelA / SpoT proteins AFR_31035 PF13291 ACT domain AFR_31035 PF13328 HD domain AFR_31040 PF00156 Phosphoribosyl transferase domain AFR_31045 PF02355 Protein export membrane protein AFR_31045 PF07549 SecD/SecF GG Motif AFR_31050 PF02355 Protein export membrane protein AFR_31055 PF02699 Preprotein translocase subunit AFR_31060 PF05491 Holliday junction DNA helicase ruvB C-terminus AFR_31060 PF05496 Holliday junction DNA helicase ruvB N-terminus AFR_31065 PF01330 RuvA N terminal domain AFR_31065 PF07499 RuvA, C-terminal domain AFR_31065 PF14520 Helix-hairpin-helix domain AFR_31070 PF02075 Crossover junction endodeoxyribonuclease RuvC AFR_31080 PF01709 Transcriptional regulator AFR_31085 PF01174 SNO glutamine amidotransferase family AFR_31090 PF01680 SOR/SNZ family AFR_31095 PF01313 AFR_31095 AFR_31105 PF13439 Glycosyltransferase Family 4 AFR_31105 PF13692 Glycosyl transferases group 1 AFR_31110 PF03279 AFR_31110 AFR_31115 PF01066 CDP-alcohol phosphatidyltransferase AFR_31120 PF00009 Elongation factor Tu GTP binding domain AFR_31120 PF00679 Elongation factor G C-terminus AFR_31120 PF03144 Elongation factor Tu domain 2 AFR_31120 PF03764 Elongation factor G, domain IV AFR_31120 PF14492 Elongation Factor G, domain II AFR_31125 PF01494 FAD binding domain AFR_31130 PF00440 Bacterial regulatory proteins, tetR family AFR_31135 PF00563 EAL domain AFR_31135 PF00990 GGDEF domain AFR_31140 PF13416 Bacterial extracellular solute-binding protein AFR_31145 PF01230 HIT domain AFR_31155 PF04542 Sigma-70 region 2 AFR_31155 PF08281 Sigma-70, region 4 AFR_31165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_31165 PF03129 Anticodon binding domain AFR_31165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AFR_31170 PF03747 ADP-ribosylglycohydrolase AFR_31175 PF00072 Response regulator receiver domain AFR_31175 PF00486 Transcriptional regulatory protein, C terminal AFR_31180 PF00512 His Kinase A (phospho-acceptor) domain AFR_31180 PF00672 HAMP domain AFR_31180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_31185 PF14200 Ricin-type beta-trefoil lectin domain-like AFR_31195 PF00962 Adenosine/AMP deaminase AFR_31200 PF13649 Methyltransferase domain AFR_31205 PF00248 Aldo/keto reductase family AFR_31215 PF00313 'Cold-shock' DNA-binding domain AFR_31220 PF14019 AFR_31220 AFR_31225 PF12277 AFR_31225 AFR_31230 PF07332 AFR_31230 AFR_31235 PF00924 Mechanosensitive ion channel AFR_31240 PF06724 AFR_31240 AFR_31250 PF14542 GCN5-related N-acetyl-transferase AFR_31255 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_31265 PF00296 Luciferase-like monooxygenase AFR_31270 PF00270 DEAD/DEAH box helicase AFR_31270 PF00271 Helicase conserved C-terminal domain AFR_31270 PF16124 AFR_31270 AFR_31280 PF13302 Acetyltransferase (GNAT) domain AFR_31285 PF12833 Helix-turn-helix domain AFR_31290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_31295 PF01872 RibD C-terminal domain AFR_31300 PF00072 Response regulator receiver domain AFR_31300 PF00196 Bacterial regulatory proteins, luxR family AFR_31305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_31305 PF07730 Histidine kinase AFR_31310 PF01061 AFR_31310 AFR_31315 PF00005 ABC transporter AFR_31320 PF00534 Glycosyl transferases group 1 AFR_31320 PF13579 Glycosyl transferase 4-like domain AFR_31330 PF00106 short chain dehydrogenase AFR_31335 PF01593 Flavin containing amine oxidoreductase AFR_31340 PF03631 AFR_31340 AFR_31345 PF03364 Polyketide cyclase / dehydrase and lipid transport AFR_31375 PF05552 Conserved TM helix AFR_31380 PF07228 Stage II sporulation protein E (SpoIIE) AFR_31380 PF08448 PAS fold AFR_31380 PF13581 Histidine kinase-like ATPase domain AFR_31385 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_31390 PF00999 Sodium/hydrogen exchanger family AFR_31400 PF11272 AFR_31400 AFR_31410 PF02861 Clp amino terminal domain AFR_31425 PF01909 Nucleotidyltransferase domain AFR_31430 PF00480 ROK family AFR_31435 PF13419 Haloacid dehalogenase-like hydrolase AFR_31445 PF12802 MarR family AFR_31450 PF02678 Pirin AFR_31450 PF05726 Pirin C-terminal cupin domain AFR_31455 PF13460 NADH(P)-binding AFR_31460 PF01638 HxlR-like helix-turn-helix AFR_31470 PF13091 PLD-like domain AFR_31475 PF07730 Histidine kinase AFR_31475 PF13796 AFR_31475 AFR_31480 PF00072 Response regulator receiver domain AFR_31480 PF00196 Bacterial regulatory proteins, luxR family AFR_31485 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AFR_31490 PF01636 Phosphotransferase enzyme family AFR_31495 PF01841 Transglutaminase-like superfamily AFR_31500 PF03561 Allantoicase repeat AFR_31505 PF01979 Amidohydrolase family AFR_31515 PF03328 HpcH/HpaI aldolase/citrate lyase family AFR_31520 PF01274 Malate synthase AFR_31525 PF03422 Carbohydrate binding module (family 6) AFR_31525 PF09362 AFR_31525 AFR_31530 PF01979 Amidohydrolase family AFR_31535 PF01014 Uricase AFR_31540 PF00576 HIUase/Transthyretin family AFR_31545 PF09349 OHCU decarboxylase AFR_31550 PF00271 Helicase conserved C-terminal domain AFR_31550 PF04408 Helicase associated domain (HA2) AFR_31550 PF08482 AFR_31550 AFR_31555 PF00563 EAL domain AFR_31555 PF00990 GGDEF domain AFR_31560 PF13672 Protein phosphatase 2C AFR_31570 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_31575 PF01809 AFR_31575 AFR_31585 PF00128 Alpha amylase, catalytic domain AFR_31585 PF11941 Domain of unknown function (DUF3459) AFR_31590 PF00128 Alpha amylase, catalytic domain AFR_31595 PF00128 Alpha amylase, catalytic domain AFR_31595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AFR_31600 PF02148 Zn-finger in ubiquitin-hydrolases and other protein AFR_31605 PF00999 Sodium/hydrogen exchanger family AFR_31610 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AFR_31610 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFR_31615 PF00535 Glycosyl transferase family 2 AFR_31620 PF00501 AMP-binding enzyme AFR_31625 PF00535 Glycosyl transferase family 2 AFR_31635 PF01370 NAD dependent epimerase/dehydratase family AFR_31640 PF00041 Fibronectin type III domain AFR_31645 PF12787 AFR_31645 AFR_31650 PF00563 EAL domain AFR_31650 PF00990 GGDEF domain AFR_31655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_31655 PF00672 HAMP domain AFR_31655 PF12729 AFR_31655 AFR_31660 PF09754 PAC2 family AFR_31665 PF00112 Papain family cysteine protease AFR_31665 PF01833 IPT/TIG domain AFR_31670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_31670 PF13185 GAF domain AFR_31675 PF00756 Putative esterase AFR_31685 PF07676 WD40-like Beta Propeller Repeat AFR_31695 PF02390 Putative methyltransferase AFR_31700 PF00512 His Kinase A (phospho-acceptor) domain AFR_31700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_31700 PF08448 PAS fold AFR_31700 PF13185 GAF domain AFR_31705 PF05694 56kDa selenium binding protein (SBP56) AFR_31715 PF01019 Gamma-glutamyltranspeptidase AFR_31725 PF00005 ABC transporter AFR_31725 PF00664 ABC transporter transmembrane region AFR_31730 PF00005 ABC transporter AFR_31730 PF00664 ABC transporter transmembrane region AFR_31735 PF00561 alpha/beta hydrolase fold AFR_31740 PF00246 Zinc carboxypeptidase AFR_31740 PF05547 AFR_31740 AFR_31745 PF07995 Glucose / Sorbosone dehydrogenase AFR_31760 PF00474 Sodium:solute symporter family AFR_31765 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFR_31765 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_31770 PF08305 NPCBM/NEW2 domain AFR_31770 PF10566 Glycoside hydrolase 97 AFR_31770 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase AFR_31770 PF14508 Glycosyl-hydrolase 97 N-terminal AFR_31770 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AFR_31775 PF00440 Bacterial regulatory proteins, tetR family AFR_31775 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_31780 PF01494 FAD binding domain AFR_31785 PF13419 Haloacid dehalogenase-like hydrolase AFR_31790 PF00296 Luciferase-like monooxygenase AFR_31795 PF00535 Glycosyl transferase family 2 AFR_31800 PF00296 Luciferase-like monooxygenase AFR_31805 PF04542 Sigma-70 region 2 AFR_31805 PF11790 AFR_31805 AFR_31810 PF13581 Histidine kinase-like ATPase domain AFR_31815 PF07228 Stage II sporulation protein E (SpoIIE) AFR_31820 PF01047 MarR family AFR_31825 PF00296 Luciferase-like monooxygenase AFR_31830 PF11774 Lsr2 AFR_31840 PF00768 D-alanyl-D-alanine carboxypeptidase AFR_31845 PF04306 AFR_31845 AFR_31855 PF02585 GlcNAc-PI de-N-acetylase AFR_31860 PF04539 Sigma-70 region 3 AFR_31860 PF04542 Sigma-70 region 2 AFR_31860 PF04545 Sigma-70, region 4 AFR_31865 PF13245 Part of AAA domain AFR_31865 PF13538 UvrD-like helicase C-terminal domain AFR_31875 PF04539 Sigma-70 region 3 AFR_31875 PF04542 Sigma-70 region 2 AFR_31875 PF04545 Sigma-70, region 4 AFR_31880 PF00270 DEAD/DEAH box helicase AFR_31880 PF00271 Helicase conserved C-terminal domain AFR_31890 PF04264 YceI-like domain AFR_31895 PF00196 Bacterial regulatory proteins, luxR family AFR_31895 PF13191 AAA ATPase domain AFR_31910 PF09949 AFR_31910 AFR_31925 PF02146 Sir2 family AFR_31930 PF00356 Bacterial regulatory proteins, lacI family AFR_31930 PF13377 Periplasmic binding protein-like domain AFR_31935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_31940 PF00005 ABC transporter AFR_31940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_31945 PF00528 Binding-protein-dependent transport system inner membrane component AFR_31950 PF00528 Binding-protein-dependent transport system inner membrane component AFR_31950 PF12911 AFR_31950 AFR_31955 PF00005 ABC transporter AFR_31955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_31960 PF00232 Glycosyl hydrolase family 1 AFR_31965 PF00480 ROK family AFR_31970 PF08242 Methyltransferase domain AFR_31980 PF00990 GGDEF domain AFR_31985 PF12802 MarR family AFR_31990 PF00248 Aldo/keto reductase family AFR_31995 PF07883 Cupin domain AFR_32000 PF12802 MarR family AFR_32005 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_32015 PF13560 Helix-turn-helix domain AFR_32020 PF04149 AFR_32020 AFR_32025 PF00521 DNA gyrase/topoisomerase IV, subunit A AFR_32025 PF03989 DNA gyrase C-terminal domain, beta-propeller AFR_32030 PF00204 DNA gyrase B AFR_32030 PF00986 DNA gyrase B subunit, carboxyl terminus AFR_32030 PF01751 Toprim domain AFR_32030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_32045 PF00211 Adenylate and Guanylate cyclase catalytic domain AFR_32050 PF00196 Bacterial regulatory proteins, luxR family AFR_32050 PF13191 AAA ATPase domain AFR_32065 PF00512 His Kinase A (phospho-acceptor) domain AFR_32065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_32070 PF00072 Response regulator receiver domain AFR_32070 PF00486 Transcriptional regulatory protein, C terminal AFR_32075 PF04542 Sigma-70 region 2 AFR_32075 PF08281 Sigma-70, region 4 AFR_32080 PF03795 YCII-related domain AFR_32085 PF00754 F5/8 type C domain AFR_32090 PF13360 PQQ-like domain AFR_32095 PF13360 PQQ-like domain AFR_32100 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_32105 PF00754 F5/8 type C domain AFR_32110 PF03713 Domain of unknown function (DUF305) AFR_32115 PF00754 F5/8 type C domain AFR_32115 PF09362 AFR_32115 AFR_32120 PF00356 Bacterial regulatory proteins, lacI family AFR_32120 PF13377 Periplasmic binding protein-like domain AFR_32130 PF01699 Sodium/calcium exchanger protein AFR_32135 PF01494 FAD binding domain AFR_32140 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_32145 PF13546 AFR_32145 AFR_32150 PF03704 Bacterial transcriptional activator domain AFR_32155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_32155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_32160 PF00440 Bacterial regulatory proteins, tetR family AFR_32165 PF12680 SnoaL-like domain AFR_32170 PF13409 Glutathione S-transferase, N-terminal domain AFR_32170 PF13410 Glutathione S-transferase, C-terminal domain AFR_32175 PF04672 S-adenosyl methyltransferase AFR_32180 PF12802 MarR family AFR_32185 PF00892 EamA-like transporter family AFR_32190 PF01370 NAD dependent epimerase/dehydratase family AFR_32195 PF00440 Bacterial regulatory proteins, tetR family AFR_32200 PF00106 short chain dehydrogenase AFR_32205 PF04434 AFR_32205 AFR_32210 PF07728 AAA domain (dynein-related subfamily) AFR_32225 PF05762 VWA domain containing CoxE-like protein AFR_32230 PF00795 Carbon-nitrogen hydrolase AFR_32235 PF12680 SnoaL-like domain AFR_32240 PF01648 4'-phosphopantetheinyl transferase superfamily AFR_32245 PF12697 Alpha/beta hydrolase family AFR_32250 PF01541 GIY-YIG catalytic domain AFR_32255 PF00583 Acetyltransferase (GNAT) family AFR_32260 PF04075 Domain of unknown function (DUF385) AFR_32265 PF04075 Domain of unknown function (DUF385) AFR_32270 PF01661 Macro domain AFR_32275 PF00005 ABC transporter AFR_32280 PF01032 FecCD transport family AFR_32285 PF01032 FecCD transport family AFR_32290 PF01497 Periplasmic binding protein AFR_32290 PF10518 TAT (twin-arginine translocation) pathway signal sequence AFR_32295 PF00004 ATPase family associated with various cellular activities (AAA) AFR_32300 PF00440 Bacterial regulatory proteins, tetR family AFR_32305 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_32310 PF00440 Bacterial regulatory proteins, tetR family AFR_32315 PF13460 NADH(P)-binding AFR_32320 PF12802 MarR family AFR_32325 PF05977 Transmembrane secretion effector AFR_32330 PF00709 Adenylosuccinate synthetase AFR_32345 PF00293 NUDIX domain AFR_32350 PF07561 AFR_32350 AFR_32355 PF00150 Cellulase (glycosyl hydrolase family 5) AFR_32365 PF01734 Patatin-like phospholipase AFR_32375 PF04542 Sigma-70 region 2 AFR_32375 PF04545 Sigma-70, region 4 AFR_32385 PF00174 Oxidoreductase molybdopterin binding domain AFR_32390 PF00175 Oxidoreductase NAD-binding domain AFR_32390 PF00970 Oxidoreductase FAD-binding domain AFR_32405 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_32410 PF00106 short chain dehydrogenase AFR_32415 PF00440 Bacterial regulatory proteins, tetR family AFR_32425 PF13396 AFR_32425 AFR_32430 PF00009 Elongation factor Tu GTP binding domain AFR_32430 PF03143 Elongation factor Tu C-terminal domain AFR_32430 PF03144 Elongation factor Tu domain 2 AFR_32435 PF03734 L,D-transpeptidase catalytic domain AFR_32440 PF00069 Protein kinase domain AFR_32445 PF01636 Phosphotransferase enzyme family AFR_32450 PF00072 Response regulator receiver domain AFR_32450 PF00512 His Kinase A (phospho-acceptor) domain AFR_32450 PF01590 GAF domain AFR_32450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_32450 PF08448 PAS fold AFR_32460 PF03259 Roadblock/LC7 domain AFR_32480 PF07470 Glycosyl Hydrolase Family 88 AFR_32485 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFR_32485 PF14572 Phosphoribosyl synthetase-associated domain AFR_32490 PF00005 ABC transporter AFR_32495 PF02566 OsmC-like protein AFR_32500 PF00005 ABC transporter AFR_32515 PF01544 CorA-like Mg2+ transporter protein AFR_32520 PF00652 Ricin-type beta-trefoil lectin domain AFR_32520 PF08787 Alginate lyase AFR_32525 PF00296 Luciferase-like monooxygenase AFR_32545 PF00092 von Willebrand factor type A domain AFR_32545 PF07584 AFR_32545 AFR_32550 PF07584 AFR_32550 AFR_32550 PF13519 von Willebrand factor type A domain AFR_32555 PF01882 AFR_32555 AFR_32560 PF07726 ATPase family associated with various cellular activities (AAA) AFR_32565 PF13365 Trypsin-like peptidase domain AFR_32570 PF00501 AMP-binding enzyme AFR_32570 PF00550 Phosphopantetheine attachment site AFR_32570 PF00668 Condensation domain AFR_32575 PF01546 Peptidase family M20/M25/M40 AFR_32575 PF07687 Peptidase dimerisation domain AFR_32585 PF05977 Transmembrane secretion effector AFR_32590 PF00652 Ricin-type beta-trefoil lectin domain AFR_32590 PF00722 Glycosyl hydrolases family 16 AFR_32595 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_32600 PF05593 AFR_32600 AFR_32600 PF07591 Pretoxin HINT domain AFR_32610 PF09656 AFR_32610 AFR_32615 PF04686 Streptomyces sporulation and cell division protein, SsgA AFR_32620 PF02311 AraC-like ligand binding domain AFR_32620 PF12833 Helix-turn-helix domain AFR_32625 PF02082 Transcriptional regulator AFR_32645 PF00990 GGDEF domain AFR_32650 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_32655 PF01569 PAP2 superfamily AFR_32660 PF03631 AFR_32660 AFR_32665 PF00781 Diacylglycerol kinase catalytic domain AFR_32670 PF14158 AFR_32670 AFR_32675 PF09348 AFR_32675 AFR_32680 PF12706 Beta-lactamase superfamily domain AFR_32685 PF09335 AFR_32685 AFR_32690 PF13354 Beta-lactamase enzyme family AFR_32705 PF00754 F5/8 type C domain AFR_32705 PF03639 Glycosyl hydrolase family 81 AFR_32715 PF00067 Cytochrome P450 AFR_32720 PF02983 Alpha-lytic protease prodomain AFR_32725 PF13454 FAD-NAD(P)-binding AFR_32730 PF00486 Transcriptional regulatory protein, C terminal AFR_32735 PF00296 Luciferase-like monooxygenase AFR_32740 PF07883 Cupin domain AFR_32745 PF00384 Molybdopterin oxidoreductase AFR_32745 PF01568 Molydopterin dinucleotide binding domain AFR_32750 PF00005 ABC transporter AFR_32755 PF09084 NMT1/THI5 like AFR_32760 PF00528 Binding-protein-dependent transport system inner membrane component AFR_32765 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_32765 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_32770 PF00296 Luciferase-like monooxygenase AFR_32775 PF01613 Flavin reductase like domain AFR_32780 PF00296 Luciferase-like monooxygenase AFR_32785 PF03358 NADPH-dependent FMN reductase AFR_32805 PF09997 AFR_32805 AFR_32815 PF00444 Ribosomal protein L36 AFR_32820 PF12697 Alpha/beta hydrolase family AFR_32825 PF00072 Response regulator receiver domain AFR_32825 PF00196 Bacterial regulatory proteins, luxR family AFR_32830 PF07730 Histidine kinase AFR_32835 PF14108 AFR_32835 AFR_32850 PF13450 NAD(P)-binding Rossmann-like domain AFR_32855 PF12804 MobA-like NTP transferase domain AFR_32860 PF02625 XdhC and CoxI family AFR_32860 PF13478 XdhC Rossmann domain AFR_32865 PF07728 AAA domain (dynein-related subfamily) AFR_32870 PF13203 AFR_32870 AFR_32875 PF13419 Haloacid dehalogenase-like hydrolase AFR_32880 PF00291 Pyridoxal-phosphate dependent enzyme AFR_32885 PF01965 DJ-1/PfpI family AFR_32885 PF12833 Helix-turn-helix domain AFR_32890 PF00857 Isochorismatase family AFR_32895 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_32900 PF12146 Putative lysophospholipase AFR_32905 PF00294 pfkB family carbohydrate kinase AFR_32910 PF01081 KDPG and KHG aldolase AFR_32925 PF08240 Alcohol dehydrogenase GroES-like domain AFR_32925 PF13602 Zinc-binding dehydrogenase AFR_32930 PF00563 EAL domain AFR_32930 PF00990 GGDEF domain AFR_32935 PF01510 N-acetylmuramoyl-L-alanine amidase AFR_32940 PF04545 Sigma-70, region 4 AFR_32950 PF00196 Bacterial regulatory proteins, luxR family AFR_32955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_32960 PF12840 Helix-turn-helix domain AFR_32965 PF05977 Transmembrane secretion effector AFR_32970 PF00293 NUDIX domain AFR_32975 PF03073 TspO/MBR family AFR_32980 PF01494 FAD binding domain AFR_32985 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_32990 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_32995 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFR_32995 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_33005 PF00128 Alpha amylase, catalytic domain AFR_33005 PF11941 Domain of unknown function (DUF3459) AFR_33010 PF00534 Glycosyl transferases group 1 AFR_33010 PF13439 Glycosyltransferase Family 4 AFR_33015 PF13439 Glycosyltransferase Family 4 AFR_33015 PF13692 Glycosyl transferases group 1 AFR_33025 PF04041 Domain of unknown function (DUF377) AFR_33030 PF00072 Response regulator receiver domain AFR_33030 PF00196 Bacterial regulatory proteins, luxR family AFR_33035 PF10282 Lactonase, 7-bladed beta-propeller AFR_33040 PF07730 Histidine kinase AFR_33050 PF08241 Methyltransferase domain AFR_33055 PF00990 GGDEF domain AFR_33060 PF00563 EAL domain AFR_33060 PF00990 GGDEF domain AFR_33065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_33065 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AFR_33070 PF05368 NmrA-like family AFR_33080 PF00266 Aminotransferase class-V AFR_33085 PF03301 Tryptophan 2,3-dioxygenase AFR_33090 PF02810 SEC-C motif AFR_33095 PF13411 MerR HTH family regulatory protein AFR_33100 PF00248 Aldo/keto reductase family AFR_33105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_33115 PF13560 Helix-turn-helix domain AFR_33120 PF00356 Bacterial regulatory proteins, lacI family AFR_33120 PF13377 Periplasmic binding protein-like domain AFR_33125 PF01547 Bacterial extracellular solute-binding protein AFR_33130 PF00528 Binding-protein-dependent transport system inner membrane component AFR_33135 PF00528 Binding-protein-dependent transport system inner membrane component AFR_33140 PF00128 Alpha amylase, catalytic domain AFR_33145 PF00754 F5/8 type C domain AFR_33145 PF12708 Pectate lyase superfamily protein AFR_33150 PF00754 F5/8 type C domain AFR_33150 PF07705 CARDB AFR_33155 PF00072 Response regulator receiver domain AFR_33155 PF00196 Bacterial regulatory proteins, luxR family AFR_33160 PF07730 Histidine kinase AFR_33170 PF00484 Carbonic anhydrase AFR_33170 PF00916 AFR_33170 AFR_33175 PF00106 short chain dehydrogenase AFR_33180 PF00391 PEP-utilising enzyme, mobile domain AFR_33180 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AFR_33180 PF02896 PEP-utilising enzyme, TIM barrel domain AFR_33185 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_33185 PF14403 AFR_33185 AFR_33190 PF00733 Asparagine synthase AFR_33190 PF13537 Glutamine amidotransferase domain AFR_33195 PF00326 Prolyl oligopeptidase family AFR_33195 PF07676 WD40-like Beta Propeller Repeat AFR_33200 PF07690 Major Facilitator Superfamily AFR_33210 PF04978 Protein of unknown function (DUF664) AFR_33215 PF14447 Prokaryotic RING finger family 4 AFR_33220 PF00027 Cyclic nucleotide-binding domain AFR_33220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_33225 PF00072 Response regulator receiver domain AFR_33225 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_33230 PF02148 Zn-finger in ubiquitin-hydrolases and other protein AFR_33235 PF01513 ATP-NAD kinase AFR_33235 PF14542 GCN5-related N-acetyl-transferase AFR_33240 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AFR_33245 PF00313 'Cold-shock' DNA-binding domain AFR_33250 PF00652 Ricin-type beta-trefoil lectin domain AFR_33250 PF02983 Alpha-lytic protease prodomain AFR_33255 PF00553 Cellulose binding domain AFR_33255 PF16483 AFR_33255 AFR_33260 PF07690 Major Facilitator Superfamily AFR_33265 PF13367 AFR_33265 AFR_33270 PF04954 Siderophore-interacting protein AFR_33270 PF08021 Siderophore-interacting FAD-binding domain AFR_33280 PF01636 Phosphotransferase enzyme family AFR_33285 PF00376 MerR family regulatory protein AFR_33285 PF03459 TOBE domain AFR_33290 PF13531 Bacterial extracellular solute-binding protein AFR_33295 PF00528 Binding-protein-dependent transport system inner membrane component AFR_33300 PF00005 ABC transporter AFR_33300 PF03459 TOBE domain AFR_33305 PF16841 AFR_33305 AFR_33310 PF05592 Bacterial alpha-L-rhamnosidase AFR_33310 PF08531 Alpha-L-rhamnosidase N-terminal domain AFR_33310 PF17389 AFR_33310 AFR_33310 PF17390 AFR_33310 AFR_33315 PF07920 Protein of unknown function (DUF1684) AFR_33325 PF00107 Zinc-binding dehydrogenase AFR_33325 PF08240 Alcohol dehydrogenase GroES-like domain AFR_33330 PF07730 Histidine kinase AFR_33335 PF00072 Response regulator receiver domain AFR_33335 PF00196 Bacterial regulatory proteins, luxR family AFR_33340 PF10067 AFR_33340 AFR_33345 PF13302 Acetyltransferase (GNAT) domain AFR_33350 PF02325 AFR_33350 AFR_33365 PF00575 S1 RNA binding domain AFR_33370 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AFR_33375 PF00440 Bacterial regulatory proteins, tetR family AFR_33375 PF16859 AFR_33375 AFR_33380 PF04978 Protein of unknown function (DUF664) AFR_33385 PF02687 AFR_33385 AFR_33390 PF00005 ABC transporter AFR_33395 PF03551 Transcriptional regulator PadR-like family AFR_33400 PF12840 Helix-turn-helix domain AFR_33405 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_33410 PF12697 Alpha/beta hydrolase family AFR_33415 PF14224 AFR_33415 AFR_33420 PF07719 Tetratricopeptide repeat AFR_33420 PF13432 Tetratricopeptide repeat AFR_33435 PF00440 Bacterial regulatory proteins, tetR family AFR_33440 PF00005 ABC transporter AFR_33440 PF00664 ABC transporter transmembrane region AFR_33445 PF00005 ABC transporter AFR_33445 PF00664 ABC transporter transmembrane region AFR_33450 PF03160 Calx-beta domain AFR_33460 PF04993 TfoX N-terminal domain AFR_33465 PF00245 Alkaline phosphatase AFR_33470 PF02397 AFR_33470 AFR_33470 PF13727 CoA-binding domain AFR_33475 PF13459 4Fe-4S single cluster domain AFR_33480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AFR_33480 PF10531 SLBB domain AFR_33480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_33485 PF01794 AFR_33485 AFR_33490 PF02424 ApbE family AFR_33500 PF00196 Bacterial regulatory proteins, luxR family AFR_33500 PF13191 AAA ATPase domain AFR_33505 PF12697 Alpha/beta hydrolase family AFR_33510 PF00072 Response regulator receiver domain AFR_33510 PF00196 Bacterial regulatory proteins, luxR family AFR_33515 PF07730 Histidine kinase AFR_33520 PF01061 AFR_33520 AFR_33525 PF00005 ABC transporter AFR_33530 PF01061 AFR_33530 AFR_33535 PF00005 ABC transporter AFR_33540 PF00075 RNase H AFR_33550 PF07731 Multicopper oxidase AFR_33550 PF07732 Multicopper oxidase AFR_33555 PF12802 MarR family AFR_33560 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_33565 PF00296 Luciferase-like monooxygenase AFR_33570 PF06441 Epoxide hydrolase N terminus AFR_33575 PF02627 Carboxymuconolactone decarboxylase family AFR_33580 PF01329 Pterin 4 alpha carbinolamine dehydratase AFR_33585 PF04237 YjbR AFR_33595 PF00196 Bacterial regulatory proteins, luxR family AFR_33595 PF13191 AAA ATPase domain AFR_33600 PF14026 Protein of unknown function (DUF4242) AFR_33605 PF00775 Dioxygenase AFR_33610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_33610 PF09130 Domain of unknown function (DUF1932) AFR_33615 PF12840 Helix-turn-helix domain AFR_33620 PF05977 Transmembrane secretion effector AFR_33625 PF04055 Radical SAM superfamily AFR_33625 PF13394 4Fe-4S single cluster domain AFR_33630 PF13411 MerR HTH family regulatory protein AFR_33635 PF01757 AFR_33635 AFR_33640 PF00356 Bacterial regulatory proteins, lacI family AFR_33640 PF13377 Periplasmic binding protein-like domain AFR_33660 PF07730 Histidine kinase AFR_33665 PF00072 Response regulator receiver domain AFR_33665 PF00196 Bacterial regulatory proteins, luxR family AFR_33675 PF00754 F5/8 type C domain AFR_33675 PF07971 Glycosyl hydrolase family 92 AFR_33680 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_33690 PF05729 NACHT domain AFR_33695 PF07971 Glycosyl hydrolase family 92 AFR_33700 PF00563 EAL domain AFR_33700 PF00990 GGDEF domain AFR_33700 PF08448 PAS fold AFR_33705 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_33705 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_33720 PF00089 Trypsin AFR_33740 PF01433 Peptidase family M1 AFR_33745 PF01904 Protein of unknown function DUF72 AFR_33750 PF12840 Helix-turn-helix domain AFR_33755 PF01738 Dienelactone hydrolase family AFR_33760 PF10517 AFR_33760 AFR_33765 PF06966 AFR_33765 AFR_33770 PF02353 Mycolic acid cyclopropane synthetase AFR_33775 PF02353 Mycolic acid cyclopropane synthetase AFR_33780 PF07103 AFR_33780 AFR_33785 PF01593 Flavin containing amine oxidoreductase AFR_33790 PF12146 Putative lysophospholipase AFR_33795 PF00722 Glycosyl hydrolases family 16 AFR_33795 PF00754 F5/8 type C domain AFR_33800 PF00754 F5/8 type C domain AFR_33800 PF09362 AFR_33800 AFR_33805 PF00356 Bacterial regulatory proteins, lacI family AFR_33805 PF13377 Periplasmic binding protein-like domain AFR_33815 PF13460 NADH(P)-binding AFR_33835 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_33840 PF13411 MerR HTH family regulatory protein AFR_33850 PF00294 pfkB family carbohydrate kinase AFR_33855 PF00294 pfkB family carbohydrate kinase AFR_33860 PF01791 DeoC/LacD family aldolase AFR_33865 PF13407 Periplasmic binding protein domain AFR_33870 PF02653 AFR_33870 AFR_33875 PF00005 ABC transporter AFR_33880 PF01565 FAD binding domain AFR_33880 PF02913 FAD linked oxidases, C-terminal domain AFR_33885 PF14502 Helix-turn-helix domain AFR_33885 PF14503 YhfZ C-terminal domain AFR_33890 PF00583 Acetyltransferase (GNAT) family AFR_33900 PF00296 Luciferase-like monooxygenase AFR_33905 PF12079 AFR_33905 AFR_33910 PF16483 AFR_33910 AFR_33915 PF03422 Carbohydrate binding module (family 6) AFR_33920 PF00011 Hsp20/alpha crystallin family AFR_33925 PF06172 Cupin superfamily (DUF985) AFR_33930 PF00817 impB/mucB/samB family AFR_33930 PF11798 IMS family HHH motif AFR_33930 PF11799 impB/mucB/samB family C-terminal domain AFR_33940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_33940 PF07730 Histidine kinase AFR_33945 PF00072 Response regulator receiver domain AFR_33945 PF00196 Bacterial regulatory proteins, luxR family AFR_33950 PF07350 Protein of unknown function (DUF1479) AFR_33955 PF00480 ROK family AFR_33955 PF13412 Winged helix-turn-helix DNA-binding AFR_33965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_33975 PF02514 AFR_33975 AFR_33980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFR_33985 PF02570 Precorrin-8X methylmutase AFR_33990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_33995 PF02571 AFR_33995 AFR_34000 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_34005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_34010 PF00175 Oxidoreductase NAD-binding domain AFR_34010 PF01794 AFR_34010 AFR_34010 PF08022 AFR_34010 AFR_34015 PF04205 FMN-binding domain AFR_34020 PF02424 ApbE family AFR_34025 PF13527 Acetyltransferase (GNAT) domain AFR_34025 PF13530 Sterol carrier protein domain AFR_34030 PF00589 Phage integrase family AFR_34045 PF00072 Response regulator receiver domain AFR_34045 PF00196 Bacterial regulatory proteins, luxR family AFR_34050 PF03712 Copper type II ascorbate-dependent monooxygenase, C-terminal domain AFR_34055 PF03176 MMPL family AFR_34060 PF00583 Acetyltransferase (GNAT) family AFR_34065 PF00384 Molybdopterin oxidoreductase AFR_34065 PF01568 Molydopterin dinucleotide binding domain AFR_34075 PF00082 Subtilase family AFR_34095 PF03734 L,D-transpeptidase catalytic domain AFR_34105 PF04542 Sigma-70 region 2 AFR_34105 PF08281 Sigma-70, region 4 AFR_34115 PF00072 Response regulator receiver domain AFR_34115 PF00486 Transcriptional regulatory protein, C terminal AFR_34120 PF00512 His Kinase A (phospho-acceptor) domain AFR_34120 PF00672 HAMP domain AFR_34120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_34125 PF12697 Alpha/beta hydrolase family AFR_34130 PF01638 HxlR-like helix-turn-helix AFR_34135 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella AFR_34140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_34140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AFR_34145 PF01965 DJ-1/PfpI family AFR_34145 PF12833 Helix-turn-helix domain AFR_34155 PF00563 EAL domain AFR_34155 PF00990 GGDEF domain AFR_34165 PF00196 Bacterial regulatory proteins, luxR family AFR_34165 PF13191 AAA ATPase domain AFR_34175 PF01055 Glycosyl hydrolases family 31 AFR_34175 PF03422 Carbohydrate binding module (family 6) AFR_34175 PF17137 AFR_34175 AFR_34180 PF00005 ABC transporter AFR_34185 PF01061 AFR_34185 AFR_34190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_34190 PF07730 Histidine kinase AFR_34195 PF00072 Response regulator receiver domain AFR_34195 PF00196 Bacterial regulatory proteins, luxR family AFR_34200 PF04672 S-adenosyl methyltransferase AFR_34205 PF02517 CAAX protease self-immunity AFR_34210 PF07730 Histidine kinase AFR_34215 PF00072 Response regulator receiver domain AFR_34215 PF00196 Bacterial regulatory proteins, luxR family AFR_34225 PF05630 Necrosis inducing protein (NPP1) AFR_34235 PF12671 AFR_34235 AFR_34240 PF13560 Helix-turn-helix domain AFR_34250 PF00717 Peptidase S24-like AFR_34250 PF01726 LexA DNA binding domain AFR_34255 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFR_34255 PF00364 Biotin-requiring enzyme AFR_34255 PF01039 Carboxyl transferase domain AFR_34255 PF02785 Biotin carboxylase C-terminal domain AFR_34255 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_34255 PF08326 AFR_34255 AFR_34275 PF01839 FG-GAP repeat AFR_34280 PF00144 Beta-lactamase AFR_34285 PF04542 Sigma-70 region 2 AFR_34285 PF08281 Sigma-70, region 4 AFR_34300 PF00069 Protein kinase domain AFR_34305 PF04542 Sigma-70 region 2 AFR_34305 PF08281 Sigma-70, region 4 AFR_34315 PF00756 Putative esterase AFR_34325 PF09084 NMT1/THI5 like AFR_34335 PF04542 Sigma-70 region 2 AFR_34335 PF08281 Sigma-70, region 4 AFR_34340 PF03422 Carbohydrate binding module (family 6) AFR_34340 PF09362 AFR_34340 AFR_34345 PF00392 Bacterial regulatory proteins, gntR family AFR_34345 PF07729 FCD domain AFR_34350 PF01425 Amidase AFR_34355 PF00857 Isochorismatase family AFR_34360 PF00857 Isochorismatase family AFR_34370 PF11533 Protein of unknown function (DUF3225) AFR_34375 PF01494 FAD binding domain AFR_34380 PF00440 Bacterial regulatory proteins, tetR family AFR_34380 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_34385 PF00294 pfkB family carbohydrate kinase AFR_34390 PF00144 Beta-lactamase AFR_34395 PF00112 Papain family cysteine protease AFR_34395 PF01833 IPT/TIG domain AFR_34400 PF06719 AFR_34400 AFR_34400 PF12833 Helix-turn-helix domain AFR_34405 PF00248 Aldo/keto reductase family AFR_34410 PF13411 MerR HTH family regulatory protein AFR_34415 PF00085 Thioredoxin AFR_34425 PF00484 Carbonic anhydrase AFR_34430 PF00990 GGDEF domain AFR_34445 PF00005 ABC transporter AFR_34450 PF00005 ABC transporter AFR_34455 PF13411 MerR HTH family regulatory protein AFR_34460 PF00440 Bacterial regulatory proteins, tetR family AFR_34465 PF00106 short chain dehydrogenase AFR_34470 PF03098 Animal haem peroxidase AFR_34480 PF08922 Domain of unknown function (DUF1905) AFR_34480 PF13376 AFR_34480 AFR_34495 PF09346 SMI1 / KNR4 family (SUKH-1) AFR_34540 PF00082 Subtilase family AFR_34540 PF05922 Peptidase inhibitor I9 AFR_34550 PF00082 Subtilase family AFR_34555 PF01896 Eukaryotic and archaeal DNA primase small subunit AFR_34560 PF00989 PAS fold AFR_34560 PF00990 GGDEF domain AFR_34565 PF07690 Major Facilitator Superfamily AFR_34570 PF03992 Antibiotic biosynthesis monooxygenase AFR_34575 PF00005 ABC transporter AFR_34580 PF00528 Binding-protein-dependent transport system inner membrane component AFR_34585 PF13379 NMT1-like family AFR_34590 PF00491 Arginase family AFR_34595 PF12680 SnoaL-like domain AFR_34620 PF00072 Response regulator receiver domain AFR_34620 PF00196 Bacterial regulatory proteins, luxR family AFR_34625 PF07730 Histidine kinase AFR_34625 PF13796 AFR_34625 AFR_34630 PF00487 AFR_34630 AFR_34635 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_34640 PF04672 S-adenosyl methyltransferase AFR_34645 PF00753 Metallo-beta-lactamase superfamily AFR_34650 PF00953 Glycosyl transferase family 4 AFR_34655 PF00459 Inositol monophosphatase family AFR_34660 PF01569 PAP2 superfamily AFR_34665 PF00072 Response regulator receiver domain AFR_34665 PF00196 Bacterial regulatory proteins, luxR family AFR_34670 PF07730 Histidine kinase AFR_34675 PF16868 AFR_34675 AFR_34680 PF06808 AFR_34680 AFR_34685 PF01066 CDP-alcohol phosphatidyltransferase AFR_34690 PF00501 AMP-binding enzyme AFR_34690 PF13193 AMP-binding enzyme C-terminal domain AFR_34700 PF00528 Binding-protein-dependent transport system inner membrane component AFR_34705 PF00528 Binding-protein-dependent transport system inner membrane component AFR_34710 PF13416 Bacterial extracellular solute-binding protein AFR_34715 PF13580 SIS domain AFR_34720 PF01380 SIS domain AFR_34720 PF01418 Helix-turn-helix domain, rpiR family AFR_34735 PF00501 AMP-binding enzyme AFR_34735 PF13193 AMP-binding enzyme C-terminal domain AFR_34740 PF00356 Bacterial regulatory proteins, lacI family AFR_34740 PF13377 Periplasmic binding protein-like domain AFR_34745 PF08922 Domain of unknown function (DUF1905) AFR_34750 PF00356 Bacterial regulatory proteins, lacI family AFR_34750 PF13377 Periplasmic binding protein-like domain AFR_34755 PF00107 Zinc-binding dehydrogenase AFR_34755 PF08240 Alcohol dehydrogenase GroES-like domain AFR_34760 PF14062 AFR_34760 AFR_34765 PF00732 GMC oxidoreductase AFR_34765 PF05199 GMC oxidoreductase AFR_34770 PF00553 Cellulose binding domain AFR_34770 PF01670 Glycosyl hydrolase family 12 AFR_34775 PF11774 Lsr2 AFR_34780 PF00106 short chain dehydrogenase AFR_34785 PF13546 AFR_34785 AFR_34790 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_34790 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AFR_34795 PF00941 FAD binding domain in molybdopterin dehydrogenase AFR_34795 PF03450 CO dehydrogenase flavoprotein C-terminal domain AFR_34800 PF00111 2Fe-2S iron-sulfur cluster binding domain AFR_34800 PF01799 [2Fe-2S] binding domain AFR_34805 PF01370 NAD dependent epimerase/dehydratase family AFR_34815 PF00563 EAL domain AFR_34815 PF00990 GGDEF domain AFR_34815 PF08448 PAS fold AFR_34820 PF06325 Ribosomal protein L11 methyltransferase (PrmA) AFR_34825 PF01566 AFR_34825 AFR_34830 PF03746 LamB/YcsF family AFR_34835 PF07286 Protein of unknown function (DUF1445) AFR_34840 PF02682 Allophanate hydrolase subunit 1 AFR_34845 PF02626 Allophanate hydrolase subunit 2 AFR_34850 PF00392 Bacterial regulatory proteins, gntR family AFR_34850 PF07729 FCD domain AFR_34855 PF13419 Haloacid dehalogenase-like hydrolase AFR_34860 PF00480 ROK family AFR_34875 PF13628 AFR_34875 AFR_34880 PF03640 AFR_34880 AFR_34885 PF13490 Putative zinc-finger AFR_34890 PF04542 Sigma-70 region 2 AFR_34890 PF04545 Sigma-70, region 4 AFR_34895 PF12680 SnoaL-like domain AFR_34900 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_34905 PF01022 Bacterial regulatory protein, arsR family AFR_34915 PF13476 AAA domain AFR_34915 PF13558 Putative exonuclease SbcCD, C subunit AFR_34920 PF00149 Calcineurin-like phosphoesterase AFR_34920 PF12320 Type 5 capsule protein repressor C-terminal domain AFR_34930 PF01872 RibD C-terminal domain AFR_34935 PF00356 Bacterial regulatory proteins, lacI family AFR_34935 PF13377 Periplasmic binding protein-like domain AFR_34945 PF00583 Acetyltransferase (GNAT) family AFR_34955 PF04055 Radical SAM superfamily AFR_34955 PF06968 Biotin and Thiamin Synthesis associated domain AFR_34960 PF00155 Aminotransferase class I and II AFR_34965 PF13500 AAA domain AFR_34970 PF13673 Acetyltransferase (GNAT) domain AFR_34975 PF00571 CBS domain AFR_34975 PF01595 AFR_34975 AFR_34975 PF03471 Transporter associated domain AFR_34980 PF03632 Glycosyl hydrolase family 65 central catalytic domain AFR_34980 PF03633 Glycosyl hydrolase family 65, C-terminal domain AFR_34980 PF03636 Glycosyl hydrolase family 65, N-terminal domain AFR_34985 PF00294 pfkB family carbohydrate kinase AFR_34990 PF01590 GAF domain AFR_34995 PF00781 Diacylglycerol kinase catalytic domain AFR_35015 PF12706 Beta-lactamase superfamily domain AFR_35025 PF01966 HD domain AFR_35025 PF13286 Phosphohydrolase-associated domain AFR_35040 PF11236 AFR_35040 AFR_35050 PF00106 short chain dehydrogenase AFR_35055 PF01068 ATP dependent DNA ligase domain AFR_35055 PF04679 ATP dependent DNA ligase C terminal region AFR_35060 PF00561 alpha/beta hydrolase fold AFR_35065 PF07885 Ion channel AFR_35070 PF00583 Acetyltransferase (GNAT) family AFR_35075 PF02687 AFR_35075 AFR_35080 PF00005 ABC transporter AFR_35085 PF07730 Histidine kinase AFR_35090 PF00072 Response regulator receiver domain AFR_35090 PF00196 Bacterial regulatory proteins, luxR family AFR_35095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_35095 PF03466 LysR substrate binding domain AFR_35100 PF08240 Alcohol dehydrogenase GroES-like domain AFR_35100 PF13602 Zinc-binding dehydrogenase AFR_35105 PF13577 SnoaL-like domain AFR_35115 PF00746 AFR_35115 AFR_35120 PF10756 AFR_35120 AFR_35125 PF01641 SelR domain AFR_35130 PF00186 Dihydrofolate reductase AFR_35135 PF00303 Thymidylate synthase AFR_35145 PF04149 AFR_35145 AFR_35150 PF03358 NADPH-dependent FMN reductase AFR_35155 PF16561 AFR_35155 AFR_35160 PF13673 Acetyltransferase (GNAT) domain AFR_35165 PF06778 Chlorite dismutase AFR_35170 PF01593 Flavin containing amine oxidoreductase AFR_35175 PF01208 Uroporphyrinogen decarboxylase (URO-D) AFR_35180 PF11452 AFR_35180 AFR_35185 PF13365 Trypsin-like peptidase domain AFR_35190 PF00570 HRDC domain AFR_35190 PF01612 3'-5' exonuclease AFR_35195 PF06626 AFR_35195 AFR_35200 PF00108 Thiolase, N-terminal domain AFR_35200 PF02803 Thiolase, C-terminal domain AFR_35205 PF00378 Enoyl-CoA hydratase/isomerase family AFR_35205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFR_35205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFR_35220 PF10935 AFR_35220 AFR_35225 PF00512 His Kinase A (phospho-acceptor) domain AFR_35225 PF00672 HAMP domain AFR_35225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_35230 PF00072 Response regulator receiver domain AFR_35230 PF00486 Transcriptional regulatory protein, C terminal AFR_35240 PF13360 PQQ-like domain AFR_35245 PF13360 PQQ-like domain AFR_35250 PF02779 Transketolase, pyrimidine binding domain AFR_35250 PF02780 Transketolase, C-terminal domain AFR_35250 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AFR_35255 PF00375 Sodium:dicarboxylate symporter family AFR_35260 PF01938 TRAM domain AFR_35260 PF05958 tRNA (Uracil-5-)-methyltransferase AFR_35265 PF13520 Amino acid permease AFR_35270 PF02080 TrkA-C domain AFR_35270 PF02254 TrkA-N domain AFR_35275 PF02080 TrkA-C domain AFR_35275 PF02254 TrkA-N domain AFR_35280 PF11361 AFR_35280 AFR_35290 PF12502 AFR_35290 AFR_35295 PF00692 dUTPase AFR_35300 PF11292 AFR_35300 AFR_35310 PF13834 AFR_35310 AFR_35315 PF13399 LytR cell envelope-related transcriptional attenuator AFR_35320 PF00459 Inositol monophosphatase family AFR_35325 PF00140 Sigma-70 factor, region 1 AFR_35325 PF04539 Sigma-70 region 3 AFR_35325 PF04542 Sigma-70 region 2 AFR_35325 PF04545 Sigma-70, region 4 AFR_35335 PF04851 Type III restriction enzyme, res subunit AFR_35340 PF03458 AFR_35340 AFR_35345 PF11238 AFR_35345 AFR_35350 PF04227 Indigoidine synthase A like protein AFR_35355 PF00294 pfkB family carbohydrate kinase AFR_35360 PF11298 AFR_35360 AFR_35365 PF00563 EAL domain AFR_35365 PF00990 GGDEF domain AFR_35365 PF03924 CHASE domain AFR_35370 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_35375 PF00392 Bacterial regulatory proteins, gntR family AFR_35375 PF07702 UTRA domain AFR_35380 PF01791 DeoC/LacD family aldolase AFR_35390 PF00563 EAL domain AFR_35390 PF00990 GGDEF domain AFR_35390 PF03924 CHASE domain AFR_35400 PF01636 Phosphotransferase enzyme family AFR_35405 PF02580 D-Tyr-tRNA(Tyr) deacylase AFR_35410 PF07070 AFR_35410 AFR_35415 PF00140 Sigma-70 factor, region 1 AFR_35415 PF04539 Sigma-70 region 3 AFR_35415 PF04542 Sigma-70 region 2 AFR_35415 PF04545 Sigma-70, region 4 AFR_35420 PF10823 AFR_35420 AFR_35425 PF00583 Acetyltransferase (GNAT) family AFR_35425 PF13380 CoA binding domain AFR_35425 PF13549 ATP-grasp domain AFR_35425 PF13607 Succinyl-CoA ligase like flavodoxin domain AFR_35430 PF00850 Histone deacetylase domain AFR_35435 PF01325 Iron dependent repressor, N-terminal DNA binding domain AFR_35435 PF02742 Iron dependent repressor, metal binding and dimerisation domain AFR_35435 PF04023 FeoA domain AFR_35455 PF12697 Alpha/beta hydrolase family AFR_35460 PF07690 Major Facilitator Superfamily AFR_35475 PF12833 Helix-turn-helix domain AFR_35480 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_35495 PF13472 GDSL-like Lipase/Acylhydrolase family AFR_35500 PF01337 Barstar (barnase inhibitor) AFR_35505 PF02867 Ribonucleotide reductase, barrel domain AFR_35505 PF08471 AFR_35505 AFR_35510 PF03477 ATP cone domain AFR_35515 PF01476 LysM domain AFR_35520 PF00717 Peptidase S24-like AFR_35520 PF01726 LexA DNA binding domain AFR_35525 PF13359 AFR_35525 AFR_35525 PF13613 AFR_35525 AFR_35535 PF01926 50S ribosome-binding GTPase AFR_35535 PF13167 AFR_35535 AFR_35535 PF16360 AFR_35535 AFR_35540 PF00390 Malic enzyme, N-terminal domain AFR_35540 PF03949 Malic enzyme, NAD binding domain AFR_35545 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_35550 PF01678 Diaminopimelate epimerase AFR_35555 PF01715 IPP transferase AFR_35560 PF03993 AFR_35560 AFR_35565 PF00291 Pyridoxal-phosphate dependent enzyme AFR_35570 PF01152 Bacterial-like globin AFR_35575 PF01638 HxlR-like helix-turn-helix AFR_35580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_35580 PF03466 LysR substrate binding domain AFR_35585 PF00106 short chain dehydrogenase AFR_35590 PF00990 GGDEF domain AFR_35595 PF00919 Uncharacterized protein family UPF0004 AFR_35595 PF04055 Radical SAM superfamily AFR_35605 PF00005 ABC transporter AFR_35610 PF00497 Bacterial extracellular solute-binding proteins, family 3 AFR_35615 PF00528 Binding-protein-dependent transport system inner membrane component AFR_35620 PF00528 Binding-protein-dependent transport system inner membrane component AFR_35625 PF01361 Tautomerase enzyme AFR_35630 PF13560 Helix-turn-helix domain AFR_35635 PF00013 KH domain AFR_35635 PF01966 HD domain AFR_35635 PF12072 AFR_35635 AFR_35650 PF02631 RecX family AFR_35655 PF00154 recA bacterial DNA recombination protein AFR_35660 PF11248 AFR_35660 AFR_35665 PF08445 FR47-like protein AFR_35670 PF03167 Uracil DNA glycosylase superfamily AFR_35675 PF00317 Ribonucleotide reductase, all-alpha domain AFR_35675 PF02867 Ribonucleotide reductase, barrel domain AFR_35675 PF03477 ATP cone domain AFR_35680 PF00268 Ribonucleotide reductase, small chain AFR_35685 PF00155 Aminotransferase class I and II AFR_35685 PF00392 Bacterial regulatory proteins, gntR family AFR_35690 PF12900 Pyridoxamine 5'-phosphate oxidase AFR_35690 PF13302 Acetyltransferase (GNAT) domain AFR_35695 PF07681 AFR_35695 AFR_35700 PF01810 AFR_35700 AFR_35705 PF07070 AFR_35705 AFR_35710 PF00571 CBS domain AFR_35710 PF01595 AFR_35710 AFR_35715 PF00571 CBS domain AFR_35715 PF01595 AFR_35715 AFR_35715 PF03471 Transporter associated domain AFR_35720 PF04389 Peptidase family M28 AFR_35725 PF00069 Protein kinase domain AFR_35730 PF04203 Sortase family AFR_35735 PF14344 AFR_35735 AFR_35740 PF00270 DEAD/DEAH box helicase AFR_35740 PF00271 Helicase conserved C-terminal domain AFR_35740 PF08494 AFR_35740 AFR_35750 PF13302 Acetyltransferase (GNAT) domain AFR_35755 PF00296 Luciferase-like monooxygenase AFR_35760 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase AFR_35770 PF01814 Hemerythrin HHE cation binding domain AFR_35775 PF00486 Transcriptional regulatory protein, C terminal AFR_35775 PF03704 Bacterial transcriptional activator domain AFR_35780 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_35780 PF06827 Zinc finger found in FPG and IleRS AFR_35780 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_35790 PF04012 AFR_35790 AFR_35795 PF13560 Helix-turn-helix domain AFR_35800 PF02464 Competence-damaged protein AFR_35805 PF01066 CDP-alcohol phosphatidyltransferase AFR_35810 PF00919 Uncharacterized protein family UPF0004 AFR_35810 PF04055 Radical SAM superfamily AFR_35815 PF09594 AFR_35815 AFR_35820 PF01580 FtsK/SpoIIIE family AFR_35820 PF09397 Ftsk gamma domain AFR_35820 PF13491 AFR_35820 AFR_35825 PF10722 Putative bacterial sensory transduction regulator AFR_35830 PF10861 AFR_35830 AFR_35835 PF00089 Trypsin AFR_35835 PF02983 Alpha-lytic protease prodomain AFR_35840 PF00753 Metallo-beta-lactamase superfamily AFR_35840 PF07521 RNA-metabolising metallo-beta-lactamase AFR_35845 PF00701 Dihydrodipicolinate synthetase family AFR_35850 PF10825 AFR_35850 AFR_35855 PF06224 AFR_35855 AFR_35860 PF00583 Acetyltransferase (GNAT) family AFR_35865 PF00583 Acetyltransferase (GNAT) family AFR_35870 PF00528 Binding-protein-dependent transport system inner membrane component AFR_35875 PF00528 Binding-protein-dependent transport system inner membrane component AFR_35880 PF13416 Bacterial extracellular solute-binding protein AFR_35885 PF00356 Bacterial regulatory proteins, lacI family AFR_35885 PF13377 Periplasmic binding protein-like domain AFR_35890 PF14742 AFR_35890 AFR_35895 PF01113 Dihydrodipicolinate reductase, N-terminus AFR_35895 PF05173 Dihydrodipicolinate reductase, C-terminus AFR_35900 PF14378 AFR_35900 AFR_35905 PF00675 Insulinase (Peptidase family M16) AFR_35905 PF05193 Peptidase M16 inactive domain AFR_35910 PF00013 KH domain AFR_35910 PF00575 S1 RNA binding domain AFR_35910 PF01138 3' exoribonuclease family, domain 1 AFR_35910 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AFR_35915 PF00312 Ribosomal protein S15 AFR_35920 PF01687 Riboflavin kinase AFR_35920 PF06574 FAD synthetase AFR_35925 PF00072 Response regulator receiver domain AFR_35925 PF00512 His Kinase A (phospho-acceptor) domain AFR_35925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_35935 PF01509 TruB family pseudouridylate synthase (N terminal domain) AFR_35935 PF09142 tRNA Pseudouridine synthase II, C terminal AFR_35935 PF16198 AFR_35935 AFR_35945 PF12802 MarR family AFR_35950 PF01554 MatE AFR_35955 PF01368 DHH family AFR_35955 PF02272 DHHA1 domain AFR_35960 PF02033 Ribosome-binding factor A AFR_35965 PF04456 Protein of unknown function (DUF503) AFR_35970 PF01170 Putative RNA methylase family UPF0020 AFR_35975 PF00009 Elongation factor Tu GTP binding domain AFR_35975 PF04760 Translation initiation factor IF-2, N-terminal region AFR_35975 PF11987 Translation-initiation factor 2 AFR_35980 PF04296 Protein of unknown function (DUF448) AFR_35985 PF08529 NusA N-terminal domain AFR_35985 PF13184 NusA-like KH domain AFR_35990 PF02576 Uncharacterised BCR, YhbC family COG0779 AFR_35990 PF17384 AFR_35990 AFR_36000 PF14530 Domain of unknown function (DUF4439) AFR_36010 PF01988 AFR_36010 AFR_36015 PF00557 Metallopeptidase family M24 AFR_36020 PF13466 STAS domain AFR_36025 PF00072 Response regulator receiver domain AFR_36025 PF00512 His Kinase A (phospho-acceptor) domain AFR_36025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_36025 PF07228 Stage II sporulation protein E (SpoIIE) AFR_36025 PF13581 Histidine kinase-like ATPase domain AFR_36030 PF01966 HD domain AFR_36035 PF07722 Peptidase C26 AFR_36040 PF07722 Peptidase C26 AFR_36045 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_36050 PF00171 Aldehyde dehydrogenase family AFR_36055 PF00120 Glutamine synthetase, catalytic domain AFR_36060 PF13520 Amino acid permease AFR_36065 PF13411 MerR HTH family regulatory protein AFR_36070 PF00106 short chain dehydrogenase AFR_36075 PF06197 AFR_36075 AFR_36080 PF12840 Helix-turn-helix domain AFR_36085 PF00144 Beta-lactamase AFR_36090 PF07730 Histidine kinase AFR_36095 PF00072 Response regulator receiver domain AFR_36095 PF00196 Bacterial regulatory proteins, luxR family AFR_36100 PF00005 ABC transporter AFR_36100 PF13732 AFR_36100 AFR_36105 PF12698 ABC-2 family transporter protein AFR_36110 PF00440 Bacterial regulatory proteins, tetR family AFR_36115 PF12698 ABC-2 family transporter protein AFR_36120 PF00005 ABC transporter AFR_36125 PF00296 Luciferase-like monooxygenase AFR_36130 PF00583 Acetyltransferase (GNAT) family AFR_36130 PF13312 AFR_36130 AFR_36135 PF03551 Transcriptional regulator PadR-like family AFR_36140 PF04551 GcpE protein AFR_36145 PF02163 Peptidase family M50 AFR_36145 PF13180 PDZ domain AFR_36150 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AFR_36150 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AFR_36150 PF13288 DXP reductoisomerase C-terminal domain AFR_36160 PF03631 AFR_36160 AFR_36165 PF03176 MMPL family AFR_36170 PF00440 Bacterial regulatory proteins, tetR family AFR_36175 PF01593 Flavin containing amine oxidoreductase AFR_36175 PF13450 NAD(P)-binding Rossmann-like domain AFR_36180 PF00355 Rieske [2Fe-2S] domain AFR_36180 PF13483 Beta-lactamase superfamily domain AFR_36185 PF10939 AFR_36185 AFR_36195 PF04055 Radical SAM superfamily AFR_36200 PF01148 Cytidylyltransferase family AFR_36205 PF01765 Ribosome recycling factor AFR_36210 PF00696 Amino acid kinase family AFR_36215 PF00889 Elongation factor TS AFR_36220 PF00318 Ribosomal protein S2 AFR_36230 PF02021 Uncharacterised protein family UPF0102 AFR_36235 PF01078 Magnesium chelatase, subunit ChlI AFR_36235 PF13335 AFR_36235 AFR_36235 PF13541 Subunit ChlI of Mg-chelatase AFR_36240 PF02481 DNA recombination-mediator protein A AFR_36255 PF00392 Bacterial regulatory proteins, gntR family AFR_36260 PF13359 AFR_36260 AFR_36260 PF13613 AFR_36260 AFR_36270 PF00589 Phage integrase family AFR_36270 PF02899 Phage integrase, N-terminal SAM-like domain AFR_36275 PF00266 Aminotransferase class-V AFR_36280 PF01551 Peptidase family M23 AFR_36285 PF10611 AFR_36285 AFR_36290 PF01351 Ribonuclease HII AFR_36295 PF00293 NUDIX domain AFR_36300 PF00717 Peptidase S24-like AFR_36305 PF00717 Peptidase S24-like AFR_36305 PF10502 Signal peptidase, peptidase S26 AFR_36310 PF01245 Ribosomal protein L19 AFR_36315 PF01746 tRNA (Guanine-1)-methyltransferase AFR_36320 PF01782 RimM N-terminal domain AFR_36320 PF05239 PRC-barrel domain AFR_36325 PF13083 KH domain AFR_36330 PF00886 Ribosomal protein S16 AFR_36340 PF04167 Protein of unknown function (DUF402) AFR_36345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_36345 PF03129 Anticodon binding domain AFR_36350 PF04542 Sigma-70 region 2 AFR_36350 PF08281 Sigma-70, region 4 AFR_36355 PF13360 PQQ-like domain AFR_36360 PF01979 Amidohydrolase family AFR_36365 PF05685 Putative restriction endonuclease AFR_36370 PF00448 SRP54-type protein, GTPase domain AFR_36370 PF02881 SRP54-type protein, helical bundle domain AFR_36370 PF02978 Signal peptide binding domain AFR_36380 PF11380 AFR_36380 AFR_36380 PF17101 AFR_36380 AFR_36380 PF17102 AFR_36380 AFR_36380 PF17103 AFR_36380 AFR_36385 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AFR_36385 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AFR_36385 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AFR_36390 PF01757 AFR_36390 AFR_36395 PF00188 Cysteine-rich secretory protein family AFR_36400 PF13578 Methyltransferase domain AFR_36405 PF00535 Glycosyl transferase family 2 AFR_36410 PF05675 AFR_36410 AFR_36415 PF01966 HD domain AFR_36420 PF00543 Nitrogen regulatory protein P-II AFR_36425 PF00909 Ammonium Transporter Family AFR_36430 PF01636 Phosphotransferase enzyme family AFR_36435 PF00448 SRP54-type protein, GTPase domain AFR_36435 PF02881 SRP54-type protein, helical bundle domain AFR_36440 PF09423 PhoD-like phosphatase AFR_36445 PF04978 Protein of unknown function (DUF664) AFR_36475 PF04542 Sigma-70 region 2 AFR_36475 PF08281 Sigma-70, region 4 AFR_36480 PF13419 Haloacid dehalogenase-like hydrolase AFR_36485 PF02463 RecF/RecN/SMC N terminal domain AFR_36485 PF06470 SMC proteins Flexible Hinge Domain AFR_36495 PF00188 Cysteine-rich secretory protein family AFR_36500 PF11997 AFR_36500 AFR_36500 PF13692 Glycosyl transferases group 1 AFR_36515 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_36515 PF06827 Zinc finger found in FPG and IleRS AFR_36515 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_36520 PF04188 AFR_36520 AFR_36525 PF00035 Double-stranded RNA binding motif AFR_36525 PF14622 Ribonuclease-III-like AFR_36530 PF02504 Fatty acid synthesis protein AFR_36535 PF01783 Ribosomal L32p protein family AFR_36540 PF02620 AFR_36540 AFR_36550 PF01467 Cytidylyltransferase AFR_36555 PF03602 Conserved hypothetical protein 95 AFR_36560 PF00746 AFR_36560 AFR_36575 PF06108 Protein of unknown function (DUF952) AFR_36580 PF00270 DEAD/DEAH box helicase AFR_36580 PF00271 Helicase conserved C-terminal domain AFR_36580 PF17191 AFR_36580 AFR_36585 PF02734 DAK2 domain AFR_36585 PF13684 Dihydroxyacetone kinase family AFR_36590 PF00830 Ribosomal L28 family AFR_36595 PF00583 Acetyltransferase (GNAT) family AFR_36600 PF00586 AIR synthase related protein, N-terminal domain AFR_36600 PF02769 AIR synthase related protein, C-terminal domain AFR_36605 PF01037 AsnC family AFR_36610 PF12028 AFR_36610 AFR_36615 PF01820 D-ala D-ala ligase N-terminus AFR_36615 PF07478 D-ala D-ala ligase C-terminus AFR_36630 PF00005 ABC transporter AFR_36635 PF00392 Bacterial regulatory proteins, gntR family AFR_36645 PF01053 Cys/Met metabolism PLP-dependent enzyme AFR_36650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AFR_36650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AFR_36655 PF01553 Acyltransferase AFR_36660 PF01983 Guanylyl transferase CofC like AFR_36670 PF02503 Polyphosphate kinase middle domain AFR_36670 PF13089 Polyphosphate kinase N-terminal domain AFR_36670 PF13090 Polyphosphate kinase C-terminal domain AFR_36675 PF00293 NUDIX domain AFR_36675 PF00300 Histidine phosphatase superfamily (branch 1) AFR_36685 PF00216 Bacterial DNA-binding protein AFR_36690 PF00694 Aconitase C-terminal domain AFR_36695 PF00330 Aconitase family (aconitate hydratase) AFR_36700 PF01614 Bacterial transcriptional regulator AFR_36700 PF09339 IclR helix-turn-helix domain AFR_36705 PF00753 Metallo-beta-lactamase superfamily AFR_36710 PF13460 NADH(P)-binding AFR_36715 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_36720 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_36720 PF10370 Domain of unknown function (DUF2437) AFR_36725 PF01381 Helix-turn-helix AFR_36730 PF12698 ABC-2 family transporter protein AFR_36735 PF00005 ABC transporter AFR_36745 PF12833 Helix-turn-helix domain AFR_36750 PF01872 RibD C-terminal domain AFR_36755 PF00472 RF-1 domain AFR_36760 PF00892 EamA-like transporter family AFR_36765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_36765 PF03466 LysR substrate binding domain AFR_36770 PF00512 His Kinase A (phospho-acceptor) domain AFR_36770 PF00672 HAMP domain AFR_36770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_36775 PF00072 Response regulator receiver domain AFR_36775 PF00486 Transcriptional regulatory protein, C terminal AFR_36780 PF13365 Trypsin-like peptidase domain AFR_36785 PF07584 AFR_36785 AFR_36785 PF13519 von Willebrand factor type A domain AFR_36790 PF01882 AFR_36790 AFR_36795 PF07726 ATPase family associated with various cellular activities (AAA) AFR_36800 PF00675 Insulinase (Peptidase family M16) AFR_36800 PF05193 Peptidase M16 inactive domain AFR_36805 PF00675 Insulinase (Peptidase family M16) AFR_36805 PF05193 Peptidase M16 inactive domain AFR_36815 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_36820 PF00440 Bacterial regulatory proteins, tetR family AFR_36825 PF00005 ABC transporter AFR_36830 PF01061 AFR_36830 AFR_36835 PF00682 HMGL-like AFR_36835 PF08502 LeuA allosteric (dimerisation) domain AFR_36840 PF13350 Tyrosine phosphatase family AFR_36855 PF01063 Aminotransferase class IV AFR_36860 PF00180 Isocitrate/isopropylmalate dehydrogenase AFR_36870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AFR_36870 PF01842 ACT domain AFR_36870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_36880 PF09488 Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth) AFR_36885 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AFR_36885 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain AFR_36890 PF10369 Small subunit of acetolactate synthase AFR_36890 PF13710 ACT domain AFR_36895 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_36895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_36895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_36900 PF00563 EAL domain AFR_36900 PF00990 GGDEF domain AFR_36905 PF00920 Dehydratase family AFR_36910 PF00703 Glycosyl hydrolases family 2 AFR_36915 PF00528 Binding-protein-dependent transport system inner membrane component AFR_36920 PF00528 Binding-protein-dependent transport system inner membrane component AFR_36925 PF01547 Bacterial extracellular solute-binding protein AFR_36930 PF00356 Bacterial regulatory proteins, lacI family AFR_36930 PF13377 Periplasmic binding protein-like domain AFR_36935 PF00563 EAL domain AFR_36935 PF00989 PAS fold AFR_36935 PF00990 GGDEF domain AFR_36940 PF02597 ThiS family AFR_36950 PF10756 AFR_36950 AFR_36955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AFR_36960 PF07995 Glucose / Sorbosone dehydrogenase AFR_36965 PF00149 Calcineurin-like phosphoesterase AFR_36970 PF02637 GatB domain AFR_36970 PF02934 GatB/GatE catalytic domain AFR_36975 PF01425 Amidase AFR_36980 PF02686 Glu-tRNAGln amidotransferase C subunit AFR_36985 PF00563 EAL domain AFR_36985 PF00990 GGDEF domain AFR_36995 PF00533 BRCA1 C Terminus (BRCT) domain AFR_36995 PF01653 NAD-dependent DNA ligase adenylation domain AFR_36995 PF03120 NAD-dependent DNA ligase OB-fold domain AFR_36995 PF12826 Helix-hairpin-helix motif AFR_37000 PF02452 PemK-like protein AFR_37010 PF01717 Cobalamin-independent synthase, Catalytic domain AFR_37015 PF03054 tRNA methyl transferase AFR_37020 PF00266 Aminotransferase class-V AFR_37025 PF00766 Electron transfer flavoprotein FAD-binding domain AFR_37025 PF01012 Electron transfer flavoprotein domain AFR_37030 PF01012 Electron transfer flavoprotein domain AFR_37035 PF02656 AFR_37035 AFR_37040 PF02656 AFR_37040 AFR_37045 PF13396 AFR_37045 AFR_37050 PF00205 Thiamine pyrophosphate enzyme, central domain AFR_37050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_37050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AFR_37055 PF00012 Hsp70 protein AFR_37065 PF00378 Enoyl-CoA hydratase/isomerase family AFR_37085 PF00294 pfkB family carbohydrate kinase AFR_37090 PF00005 ABC transporter AFR_37095 PF00480 ROK family AFR_37095 PF12802 MarR family AFR_37100 PF00933 Glycosyl hydrolase family 3 N terminal domain AFR_37110 PF04134 AFR_37110 AFR_37115 PF00440 Bacterial regulatory proteins, tetR family AFR_37120 PF00122 E1-E2 ATPase AFR_37120 PF00403 Heavy-metal-associated domain AFR_37120 PF00702 haloacid dehalogenase-like hydrolase AFR_37125 PF00440 Bacterial regulatory proteins, tetR family AFR_37125 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_37130 PF12697 Alpha/beta hydrolase family AFR_37135 PF05088 AFR_37135 AFR_37140 PF00905 Penicillin binding protein transpeptidase domain AFR_37140 PF03717 Penicillin-binding Protein dimerisation domain AFR_37140 PF05223 NTF2-like N-terminal transpeptidase domain AFR_37145 PF00491 Arginase family AFR_37150 PF00085 Thioredoxin AFR_37150 PF14561 Tetratricopeptide repeat AFR_37155 PF00106 short chain dehydrogenase AFR_37160 PF00440 Bacterial regulatory proteins, tetR family AFR_37165 PF13546 AFR_37165 AFR_37170 PF01642 Methylmalonyl-CoA mutase AFR_37175 PF01447 Thermolysin metallopeptidase, catalytic domain AFR_37175 PF02868 Thermolysin metallopeptidase, alpha-helical domain AFR_37175 PF07504 Fungalysin/Thermolysin Propeptide Motif AFR_37185 PF13407 Periplasmic binding protein domain AFR_37190 PF00990 GGDEF domain AFR_37195 PF01494 FAD binding domain AFR_37200 PF03551 Transcriptional regulator PadR-like family AFR_37205 PF03308 ArgK protein AFR_37210 PF00108 Thiolase, N-terminal domain AFR_37210 PF02803 Thiolase, C-terminal domain AFR_37215 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_37230 PF01594 AFR_37230 AFR_37245 PF00171 Aldehyde dehydrogenase family AFR_37250 PF00005 ABC transporter AFR_37260 PF01939 Protein of unknown function DUF91 AFR_37265 PF13548 AFR_37265 AFR_37275 PF01580 FtsK/SpoIIIE family AFR_37285 PF00005 ABC transporter AFR_37290 PF01061 AFR_37290 AFR_37295 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AFR_37295 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AFR_37305 PF07081 Protein of unknown function (DUF1349) AFR_37310 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFR_37315 PF01923 Cobalamin adenosyltransferase AFR_37320 PF10739 AFR_37320 AFR_37325 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AFR_37330 PF03816 Cell envelope-related transcriptional attenuator domain AFR_37335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_37335 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFR_37340 PF00231 ATP synthase AFR_37345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_37345 PF00306 ATP synthase alpha/beta chain, C terminal domain AFR_37345 PF02874 ATP synthase alpha/beta family, beta-barrel domain AFR_37350 PF00213 ATP synthase delta (OSCP) subunit AFR_37355 PF00430 ATP synthase B/B' CF(0) AFR_37360 PF00137 ATP synthase subunit C AFR_37365 PF00119 ATP synthase A chain AFR_37370 PF09527 AFR_37370 AFR_37380 PF00464 Serine hydroxymethyltransferase AFR_37385 PF11066 AFR_37385 AFR_37385 PF13460 NADH(P)-binding AFR_37390 PF01300 Telomere recombination AFR_37390 PF03481 Putative GTP-binding controlling metal-binding AFR_37395 PF01451 Low molecular weight phosphotyrosine protein phosphatase AFR_37400 PF01300 Telomere recombination AFR_37405 PF05175 Methyltransferase small domain AFR_37410 PF00990 GGDEF domain AFR_37415 PF13360 PQQ-like domain AFR_37420 PF00472 RF-1 domain AFR_37420 PF03462 PCRF domain AFR_37425 PF01197 Ribosomal protein L31 AFR_37430 PF09511 RNA ligase AFR_37435 PF13671 AAA domain AFR_37440 PF09414 RNA ligase AFR_37445 PF02898 Nitric oxide synthase, oxygenase domain AFR_37450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_37450 PF07497 Rho termination factor, RNA-binding domain AFR_37450 PF07498 Rho termination factor, N-terminal domain AFR_37455 PF00288 GHMP kinases N terminal domain AFR_37455 PF08544 GHMP kinases C terminal AFR_37465 PF07690 Major Facilitator Superfamily AFR_37470 PF00873 AcrB/AcrD/AcrF family AFR_37475 PF01047 MarR family AFR_37480 PF00291 Pyridoxal-phosphate dependent enzyme AFR_37485 PF00742 Homoserine dehydrogenase AFR_37485 PF01842 ACT domain AFR_37485 PF03447 Homoserine dehydrogenase, NAD binding domain AFR_37490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AFR_37490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AFR_37495 PF00750 tRNA synthetases class I (R) AFR_37495 PF03485 Arginyl tRNA synthetase N terminal domain AFR_37495 PF05746 DALR anticodon binding domain AFR_37500 PF11303 AFR_37500 AFR_37505 PF03713 Domain of unknown function (DUF305) AFR_37515 PF08240 Alcohol dehydrogenase GroES-like domain AFR_37515 PF13602 Zinc-binding dehydrogenase AFR_37525 PF00378 Enoyl-CoA hydratase/isomerase family AFR_37540 PF00754 F5/8 type C domain AFR_37540 PF07705 CARDB AFR_37545 PF00106 short chain dehydrogenase AFR_37550 PF13560 Helix-turn-helix domain AFR_37555 PF00501 AMP-binding enzyme AFR_37555 PF13193 AMP-binding enzyme C-terminal domain AFR_37560 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFR_37565 PF00221 Aromatic amino acid lyase AFR_37570 PF13738 Pyridine nucleotide-disulphide oxidoreductase AFR_37575 PF01070 FMN-dependent dehydrogenase AFR_37580 PF00067 Cytochrome P450 AFR_37585 PF00999 Sodium/hydrogen exchanger family AFR_37590 PF00072 Response regulator receiver domain AFR_37590 PF00486 Transcriptional regulatory protein, C terminal AFR_37595 PF00512 His Kinase A (phospho-acceptor) domain AFR_37595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_37605 PF00069 Protein kinase domain AFR_37610 PF12680 SnoaL-like domain AFR_37615 PF00144 Beta-lactamase AFR_37640 PF03807 NADP oxidoreductase coenzyme F420-dependent AFR_37645 PF01638 HxlR-like helix-turn-helix AFR_37650 PF12146 Putative lysophospholipase AFR_37655 PF04892 AFR_37655 AFR_37660 PF00106 short chain dehydrogenase AFR_37665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_37665 PF03466 LysR substrate binding domain AFR_37670 PF00440 Bacterial regulatory proteins, tetR family AFR_37675 PF07690 Major Facilitator Superfamily AFR_37680 PF02694 AFR_37680 AFR_37685 PF13466 STAS domain AFR_37690 PF12833 Helix-turn-helix domain AFR_37690 PF14525 AFR_37690 AFR_37705 PF00583 Acetyltransferase (GNAT) family AFR_37710 PF00440 Bacterial regulatory proteins, tetR family AFR_37715 PF00174 Oxidoreductase molybdopterin binding domain AFR_37720 PF02469 Fasciclin domain AFR_37725 PF14325 AFR_37725 AFR_37730 PF10099 AFR_37730 AFR_37730 PF13490 Putative zinc-finger AFR_37735 PF04542 Sigma-70 region 2 AFR_37735 PF08281 Sigma-70, region 4 AFR_37740 PF04542 Sigma-70 region 2 AFR_37740 PF08281 Sigma-70, region 4 AFR_37750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_37770 PF04542 Sigma-70 region 2 AFR_37770 PF08281 Sigma-70, region 4 AFR_37775 PF03738 Glutathionylspermidine synthase preATP-grasp AFR_37785 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_37790 PF00128 Alpha amylase, catalytic domain AFR_37810 PF03551 Transcriptional regulator PadR-like family AFR_37815 PF09335 AFR_37815 AFR_37820 PF00704 Glycosyl hydrolases family 18 AFR_37825 PF00704 Glycosyl hydrolases family 18 AFR_37830 PF02096 60Kd inner membrane protein AFR_37840 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_37845 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_37845 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_37850 PF01522 Polysaccharide deacetylase AFR_37855 PF06827 Zinc finger found in FPG and IleRS AFR_37855 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_37860 PF00574 Clp protease AFR_37870 PF02274 Amidinotransferase AFR_37875 PF00202 Aminotransferase class-III AFR_37885 PF01329 Pterin 4 alpha carbinolamine dehydratase AFR_37900 PF01553 Acyltransferase AFR_37905 PF01734 Patatin-like phospholipase AFR_37910 PF00704 Glycosyl hydrolases family 18 AFR_37915 PF00005 ABC transporter AFR_37935 PF13180 PDZ domain AFR_37935 PF13365 Trypsin-like peptidase domain AFR_37940 PF00512 His Kinase A (phospho-acceptor) domain AFR_37940 PF00672 HAMP domain AFR_37940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_37945 PF00072 Response regulator receiver domain AFR_37945 PF00486 Transcriptional regulatory protein, C terminal AFR_37950 PF01553 Acyltransferase AFR_37955 PF13444 Acetyltransferase (GNAT) domain AFR_37960 PF00005 ABC transporter AFR_37970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AFR_37970 PF00676 Dehydrogenase E1 component AFR_37970 PF02779 Transketolase, pyrimidine binding domain AFR_37970 PF16078 AFR_37970 AFR_37970 PF16870 AFR_37970 AFR_37980 PF09818 Predicted ATPase of the ABC class AFR_37985 PF00005 ABC transporter AFR_37990 PF00005 ABC transporter AFR_37995 PF01515 Phosphate acetyl/butaryl transferase AFR_37995 PF07085 DRTGG domain AFR_37995 PF13500 AAA domain AFR_38000 PF00871 Acetokinase family AFR_38010 PF12740 Chlorophyllase enzyme AFR_38015 PF00107 Zinc-binding dehydrogenase AFR_38020 PF00390 Malic enzyme, N-terminal domain AFR_38020 PF03949 Malic enzyme, NAD binding domain AFR_38025 PF00717 Peptidase S24-like AFR_38030 PF09055 Nickel-containing superoxide dismutase AFR_38035 PF00583 Acetyltransferase (GNAT) family AFR_38045 PF00392 Bacterial regulatory proteins, gntR family AFR_38045 PF07729 FCD domain AFR_38055 PF00781 Diacylglycerol kinase catalytic domain AFR_38060 PF02467 AFR_38060 AFR_38065 PF01903 CbiX AFR_38070 PF01507 Phosphoadenosine phosphosulfate reductase family AFR_38080 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AFR_38080 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AFR_38085 PF13231 AFR_38085 AFR_38095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_38095 PF07568 AFR_38095 AFR_38095 PF08448 PAS fold AFR_38095 PF12282 Signal transduction histidine kinase AFR_38100 PF01380 SIS domain AFR_38110 PF00364 Biotin-requiring enzyme AFR_38115 PF13490 Putative zinc-finger AFR_38120 PF04542 Sigma-70 region 2 AFR_38120 PF08281 Sigma-70, region 4 AFR_38135 PF02586 Uncharacterised ACR, COG2135 AFR_38140 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AFR_38145 PF03193 Protein of unknown function, DUF258 AFR_38150 PF00459 Inositol monophosphatase family AFR_38170 PF00072 Response regulator receiver domain AFR_38170 PF00196 Bacterial regulatory proteins, luxR family AFR_38175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_38175 PF07730 Histidine kinase AFR_38180 PF13581 Histidine kinase-like ATPase domain AFR_38185 PF00722 Glycosyl hydrolases family 16 AFR_38190 PF00652 Ricin-type beta-trefoil lectin domain AFR_38190 PF00722 Glycosyl hydrolases family 16 AFR_38195 PF00905 Penicillin binding protein transpeptidase domain AFR_38195 PF00912 Transglycosylase AFR_38200 PF00754 F5/8 type C domain AFR_38200 PF01374 Glycosyl hydrolase family 46 AFR_38210 PF02446 4-alpha-glucanotransferase AFR_38215 PF14013 AFR_38215 AFR_38220 PF14013 AFR_38220 AFR_38230 PF13581 Histidine kinase-like ATPase domain AFR_38230 PF14417 AFR_38230 AFR_38235 PF14765 Polyketide synthase dehydratase AFR_38240 PF07394 AFR_38240 AFR_38245 PF08811 AFR_38245 AFR_38250 PF01564 Spermine/spermidine synthase AFR_38260 PF03176 MMPL family AFR_38265 PF03741 AFR_38265 AFR_38275 PF00805 Pentapeptide repeats (8 copies) AFR_38280 PF00932 Lamin Tail Domain AFR_38285 PF09965 AFR_38285 AFR_38290 PF00106 short chain dehydrogenase AFR_38305 PF03699 AFR_38305 AFR_38310 PF05362 Lon protease (S16) C-terminal proteolytic domain AFR_38310 PF13180 PDZ domain AFR_38315 PF10103 Uncharacterised conserved protein (DUF2342) AFR_38325 PF01863 Protein of unknown function DUF45 AFR_38340 PF01636 Phosphotransferase enzyme family AFR_38340 PF03109 AFR_38340 AFR_38345 PF02467 AFR_38345 AFR_38355 PF00570 HRDC domain AFR_38355 PF13245 Part of AAA domain AFR_38355 PF13361 UvrD-like helicase C-terminal domain AFR_38360 PF00462 Glutaredoxin AFR_38365 PF09362 AFR_38365 AFR_38370 PF00072 Response regulator receiver domain AFR_38370 PF00196 Bacterial regulatory proteins, luxR family AFR_38375 PF07730 Histidine kinase AFR_38385 PF05721 Phytanoyl-CoA dioxygenase (PhyH) AFR_38390 PF00293 NUDIX domain AFR_38390 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AFR_38395 PF00675 Insulinase (Peptidase family M16) AFR_38395 PF05193 Peptidase M16 inactive domain AFR_38400 PF00675 Insulinase (Peptidase family M16) AFR_38400 PF05193 Peptidase M16 inactive domain AFR_38410 PF00656 Caspase domain AFR_38410 PF02622 Uncharacterized ACR, COG1678 AFR_38425 PF01522 Polysaccharide deacetylase AFR_38435 PF02082 Transcriptional regulator AFR_38440 PF13379 NMT1-like family AFR_38445 PF00005 ABC transporter AFR_38450 PF00528 Binding-protein-dependent transport system inner membrane component AFR_38460 PF01553 Acyltransferase AFR_38465 PF00313 'Cold-shock' DNA-binding domain AFR_38475 PF00580 UvrD/REP helicase N-terminal domain AFR_38475 PF12705 PD-(D/E)XK nuclease superfamily AFR_38475 PF13361 UvrD-like helicase C-terminal domain AFR_38480 PF00580 UvrD/REP helicase N-terminal domain AFR_38480 PF12705 PD-(D/E)XK nuclease superfamily AFR_38480 PF13361 UvrD-like helicase C-terminal domain AFR_38485 PF00356 Bacterial regulatory proteins, lacI family AFR_38485 PF13377 Periplasmic binding protein-like domain AFR_38490 PF05988 AFR_38490 AFR_38495 PF03641 Possible lysine decarboxylase AFR_38500 PF03641 Possible lysine decarboxylase AFR_38505 PF01546 Peptidase family M20/M25/M40 AFR_38505 PF07687 Peptidase dimerisation domain AFR_38510 PF10824 Protein of unknown function (DUF2580) AFR_38525 PF09394 Chagasin family peptidase inhibitor I42 AFR_38530 PF14602 Hexapeptide repeat of succinyl-transferase AFR_38530 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AFR_38535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_38535 PF03466 LysR substrate binding domain AFR_38540 PF01810 AFR_38540 AFR_38550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_38555 PF12833 Helix-turn-helix domain AFR_38560 PF13671 AAA domain AFR_38565 PF02767 DNA polymerase III beta subunit, central domain AFR_38565 PF13411 MerR HTH family regulatory protein AFR_38570 PF01212 Beta-eliminating lyase AFR_38575 PF00248 Aldo/keto reductase family AFR_38580 PF04542 Sigma-70 region 2 AFR_38580 PF08281 Sigma-70, region 4 AFR_38585 PF00106 short chain dehydrogenase AFR_38590 PF01022 Bacterial regulatory protein, arsR family AFR_38595 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_38610 PF04107 Glutamate-cysteine ligase family 2(GCS2) AFR_38615 PF03781 Sulfatase-modifying factor enzyme 1 AFR_38615 PF12867 DinB superfamily AFR_38620 PF13522 Glutamine amidotransferase domain AFR_38625 PF10017 AFR_38625 AFR_38630 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_38635 PF04542 Sigma-70 region 2 AFR_38635 PF08281 Sigma-70, region 4 AFR_38635 PF12680 SnoaL-like domain AFR_38645 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_38650 PF02449 Beta-galactosidase AFR_38655 PF00534 Glycosyl transferases group 1 AFR_38655 PF13439 Glycosyltransferase Family 4 AFR_38660 PF01943 AFR_38660 AFR_38665 PF13231 AFR_38665 AFR_38675 PF00534 Glycosyl transferases group 1 AFR_38675 PF13439 Glycosyltransferase Family 4 AFR_38685 PF00139 Legume lectin domain AFR_38710 PF14362 AFR_38710 AFR_38715 PF00248 Aldo/keto reductase family AFR_38720 PF04402 Protein of unknown function (DUF541) AFR_38725 PF00082 Subtilase family AFR_38740 PF00155 Aminotransferase class I and II AFR_38745 PF00037 4Fe-4S binding domain AFR_38750 PF00583 Acetyltransferase (GNAT) family AFR_38755 PF00106 short chain dehydrogenase AFR_38760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_38760 PF03466 LysR substrate binding domain AFR_38770 PF04294 AFR_38770 AFR_38770 PF12229 Putative peptidoglycan binding domain AFR_38780 PF02585 GlcNAc-PI de-N-acetylase AFR_38785 PF00326 Prolyl oligopeptidase family AFR_38790 PF05685 Putative restriction endonuclease AFR_38795 PF00990 GGDEF domain AFR_38800 PF01523 Putative modulator of DNA gyrase AFR_38805 PF01523 Putative modulator of DNA gyrase AFR_38820 PF00890 FAD binding domain AFR_38820 PF02910 Fumarate reductase flavoprotein C-term AFR_38825 PF13085 2Fe-2S iron-sulfur cluster binding domain AFR_38825 PF13183 4Fe-4S dicluster domain AFR_38840 PF13367 AFR_38840 AFR_38855 PF13532 2OG-Fe(II) oxygenase superfamily AFR_38860 PF00005 ABC transporter AFR_38860 PF12399 Branched-chain amino acid ATP-binding cassette transporter AFR_38865 PF00005 ABC transporter AFR_38870 PF02653 AFR_38870 AFR_38875 PF02653 AFR_38875 AFR_38880 PF13458 Periplasmic binding protein AFR_38885 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_38890 PF00106 short chain dehydrogenase AFR_38895 PF01636 Phosphotransferase enzyme family AFR_38900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_38900 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_38900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_38905 PF00440 Bacterial regulatory proteins, tetR family AFR_38910 PF12728 Helix-turn-helix domain AFR_38920 PF00196 Bacterial regulatory proteins, luxR family AFR_38925 PF00072 Response regulator receiver domain AFR_38925 PF00196 Bacterial regulatory proteins, luxR family AFR_38930 PF13581 Histidine kinase-like ATPase domain AFR_38935 PF01370 NAD dependent epimerase/dehydratase family AFR_38945 PF00501 AMP-binding enzyme AFR_38955 PF13535 ATP-grasp domain AFR_38960 PF00535 Glycosyl transferase family 2 AFR_38965 PF03301 Tryptophan 2,3-dioxygenase AFR_38970 PF00107 Zinc-binding dehydrogenase AFR_38970 PF08240 Alcohol dehydrogenase GroES-like domain AFR_38975 PF00171 Aldehyde dehydrogenase family AFR_38980 PF00440 Bacterial regulatory proteins, tetR family AFR_38980 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_38985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AFR_38985 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_38985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_38990 PF00501 AMP-binding enzyme AFR_38990 PF13193 AMP-binding enzyme C-terminal domain AFR_38995 PF00293 NUDIX domain AFR_39005 PF08000 Bacterial PH domain AFR_39010 PF13586 AFR_39010 AFR_39015 PF00652 Ricin-type beta-trefoil lectin domain AFR_39015 PF00801 PKD domain AFR_39015 PF03422 Carbohydrate binding module (family 6) AFR_39015 PF07995 Glucose / Sorbosone dehydrogenase AFR_39020 PF00652 Ricin-type beta-trefoil lectin domain AFR_39020 PF06283 Trehalose utilisation AFR_39020 PF06439 Domain of Unknown Function (DUF1080) AFR_39025 PF03575 Peptidase family S51 AFR_39030 PF01909 Nucleotidyltransferase domain AFR_39035 PF08241 Methyltransferase domain AFR_39040 PF07501 G5 domain AFR_39045 PF00932 Lamin Tail Domain AFR_39050 PF03358 NADPH-dependent FMN reductase AFR_39055 PF12802 MarR family AFR_39065 PF04167 Protein of unknown function (DUF402) AFR_39070 PF12840 Helix-turn-helix domain AFR_39080 PF07690 Major Facilitator Superfamily AFR_39090 PF06094 AIG2-like family AFR_39095 PF05685 Putative restriction endonuclease AFR_39100 PF15891 AFR_39100 AFR_39115 PF01926 50S ribosome-binding GTPase AFR_39115 PF06071 Protein of unknown function (DUF933) AFR_39125 PF13560 Helix-turn-helix domain AFR_39135 PF00583 Acetyltransferase (GNAT) family AFR_39145 PF13649 Methyltransferase domain AFR_39150 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_39150 PF02805 Metal binding domain of Ada AFR_39150 PF06029 AlkA N-terminal domain AFR_39150 PF12833 Helix-turn-helix domain AFR_39155 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFR_39165 PF07591 Pretoxin HINT domain AFR_39170 PF13385 Concanavalin A-like lectin/glucanases superfamily AFR_39175 PF00133 tRNA synthetases class I (I, L, M and V) AFR_39175 PF08264 Anticodon-binding domain of tRNA AFR_39190 PF02646 AFR_39190 AFR_39195 PF02401 LytB protein AFR_39210 PF02601 AFR_39210 AFR_39210 PF13742 AFR_39210 AFR_39215 PF02609 Exonuclease VII small subunit AFR_39220 PF14030 AFR_39220 AFR_39225 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AFR_39230 PF04657 AFR_39230 AFR_39235 PF01694 Rhomboid family AFR_39240 PF00089 Trypsin AFR_39250 PF02562 PhoH-like protein AFR_39250 PF13638 PIN domain AFR_39255 PF02358 Trehalose-phosphatase AFR_39260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_39260 PF03466 LysR substrate binding domain AFR_39265 PF00892 EamA-like transporter family AFR_39270 PF01255 Putative undecaprenyl diphosphate synthase AFR_39275 PF01494 FAD binding domain AFR_39290 PF00821 Phosphoenolpyruvate carboxykinase AFR_39290 PF17297 AFR_39290 AFR_39295 PF04542 Sigma-70 region 2 AFR_39295 PF13490 Putative zinc-finger AFR_39300 PF04138 AFR_39300 AFR_39305 PF04138 AFR_39305 AFR_39310 PF03703 AFR_39310 AFR_39315 PF02237 Biotin protein ligase C terminal domain AFR_39315 PF03099 Biotin/lipoate A/B protein ligase family AFR_39325 PF01039 Carboxyl transferase domain AFR_39330 PF13398 Peptidase M50B-like AFR_39335 PF13398 Peptidase M50B-like AFR_39345 PF00069 Protein kinase domain AFR_39360 PF00082 Subtilase family AFR_39365 PF02545 Maf-like protein AFR_39370 PF01061 AFR_39370 AFR_39375 PF00005 ABC transporter AFR_39375 PF13732 AFR_39375 AFR_39380 PF03551 Transcriptional regulator PadR-like family AFR_39385 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFR_39385 PF00364 Biotin-requiring enzyme AFR_39385 PF02785 Biotin carboxylase C-terminal domain AFR_39385 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_39390 PF00440 Bacterial regulatory proteins, tetR family AFR_39390 PF13305 WHG domain AFR_39395 PF13564 AFR_39395 AFR_39400 PF01841 Transglutaminase-like superfamily AFR_39400 PF08379 AFR_39400 AFR_39405 PF04168 AFR_39405 AFR_39410 PF14403 AFR_39410 AFR_39415 PF09335 AFR_39415 AFR_39420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AFR_39420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_39425 PF13772 AIG2-like family AFR_39430 PF00583 Acetyltransferase (GNAT) family AFR_39445 PF13483 Beta-lactamase superfamily domain AFR_39450 PF14257 AFR_39450 AFR_39455 PF01546 Peptidase family M20/M25/M40 AFR_39455 PF07687 Peptidase dimerisation domain AFR_39460 PF01642 Methylmalonyl-CoA mutase AFR_39465 PF00069 Protein kinase domain AFR_39465 PF01789 PsbP AFR_39470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AFR_39470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AFR_39470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AFR_39470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AFR_39475 PF05719 Golgi phosphoprotein 3 (GPP34) AFR_39480 PF08759 Domain of unknown function (DUF1792) AFR_39485 PF00535 Glycosyl transferase family 2 AFR_39485 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AFR_39490 PF00293 NUDIX domain AFR_39495 PF14681 Uracil phosphoribosyltransferase AFR_39500 PF01791 DeoC/LacD family aldolase AFR_39505 PF00171 Aldehyde dehydrogenase family AFR_39510 PF00171 Aldehyde dehydrogenase family AFR_39525 PF14024 AFR_39525 AFR_39530 PF03029 Conserved hypothetical ATP binding protein AFR_39535 PF05331 AFR_39535 AFR_39540 PF03259 Roadblock/LC7 domain AFR_39545 PF00672 HAMP domain AFR_39545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_39545 PF08376 Nitrate and nitrite sensing AFR_39550 PF00962 Adenosine/AMP deaminase AFR_39560 PF14094 AFR_39560 AFR_39565 PF00591 Glycosyl transferase family, a/b domain AFR_39565 PF02885 Glycosyl transferase family, helical bundle domain AFR_39565 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AFR_39570 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AFR_39575 PF02653 AFR_39575 AFR_39580 PF02653 AFR_39580 AFR_39585 PF00005 ABC transporter AFR_39590 PF02608 Basic membrane protein AFR_39605 PF00440 Bacterial regulatory proteins, tetR family AFR_39605 PF16859 AFR_39605 AFR_39615 PF03631 AFR_39615 AFR_39620 PF13563 2'-5' RNA ligase superfamily AFR_39625 PF00579 tRNA synthetases class I (W and Y) AFR_39630 PF01370 NAD dependent epimerase/dehydratase family AFR_39635 PF00288 GHMP kinases N terminal domain AFR_39635 PF08544 GHMP kinases C terminal AFR_39635 PF10509 Galactokinase galactose-binding signature AFR_39640 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AFR_39645 PF01022 Bacterial regulatory protein, arsR family AFR_39655 PF04616 Glycosyl hydrolases family 43 AFR_39660 PF04616 Glycosyl hydrolases family 43 AFR_39665 PF00528 Binding-protein-dependent transport system inner membrane component AFR_39670 PF00528 Binding-protein-dependent transport system inner membrane component AFR_39675 PF13416 Bacterial extracellular solute-binding protein AFR_39680 PF06964 Alpha-L-arabinofuranosidase C-terminus AFR_39685 PF00356 Bacterial regulatory proteins, lacI family AFR_39685 PF13377 Periplasmic binding protein-like domain AFR_39690 PF00009 Elongation factor Tu GTP binding domain AFR_39695 PF01507 Phosphoadenosine phosphosulfate reductase family AFR_39700 PF00459 Inositol monophosphatase family AFR_39705 PF02397 AFR_39705 AFR_39710 PF01195 Peptidyl-tRNA hydrolase AFR_39715 PF01386 Ribosomal L25p family AFR_39715 PF14693 Ribosomal protein TL5, C-terminal domain AFR_39720 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AFR_39720 PF14572 Phosphoribosyl synthetase-associated domain AFR_39725 PF00132 Bacterial transferase hexapeptide (six repeats) AFR_39725 PF12804 MobA-like NTP transferase domain AFR_39730 PF10503 Esterase PHB depolymerase AFR_39745 PF00685 Sulfotransferase domain AFR_39750 PF00561 alpha/beta hydrolase fold AFR_39755 PF00550 Phosphopantetheine attachment site AFR_39760 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_39760 PF00698 Acyl transferase domain AFR_39760 PF01648 4'-phosphopantetheinyl transferase superfamily AFR_39760 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_39760 PF14765 Polyketide synthase dehydratase AFR_39760 PF16197 AFR_39760 AFR_39765 PF00109 Beta-ketoacyl synthase, N-terminal domain AFR_39765 PF00698 Acyl transferase domain AFR_39765 PF02801 Beta-ketoacyl synthase, C-terminal domain AFR_39765 PF08659 KR domain AFR_39765 PF16197 AFR_39765 AFR_39770 PF00440 Bacterial regulatory proteins, tetR family AFR_39775 PF14325 AFR_39775 AFR_39780 PF14325 AFR_39780 AFR_39785 PF00005 ABC transporter AFR_39785 PF16326 AFR_39785 AFR_39790 PF00288 GHMP kinases N terminal domain AFR_39790 PF08544 GHMP kinases C terminal AFR_39795 PF05685 Putative restriction endonuclease AFR_39800 PF00398 Ribosomal RNA adenine dimethylase AFR_39810 PF01026 TatD related DNase AFR_39825 PF09334 tRNA synthetases class I (M) AFR_39835 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_39840 PF13231 AFR_39840 AFR_39840 PF16192 AFR_39840 AFR_39850 PF01522 Polysaccharide deacetylase AFR_39850 PF13641 Glycosyltransferase like family 2 AFR_39855 PF01590 GAF domain AFR_39860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_39865 PF00149 Calcineurin-like phosphoesterase AFR_39875 PF01872 RibD C-terminal domain AFR_39890 PF13302 Acetyltransferase (GNAT) domain AFR_39895 PF00994 Probable molybdopterin binding domain AFR_39895 PF03453 MoeA N-terminal region (domain I and II) AFR_39895 PF03454 MoeA C-terminal region (domain IV) AFR_39900 PF00483 Nucleotidyl transferase AFR_39905 PF00672 HAMP domain AFR_39905 PF00990 GGDEF domain AFR_39905 PF01590 GAF domain AFR_39910 PF01812 5-formyltetrahydrofolate cyclo-ligase family AFR_39915 PF09723 AFR_39915 AFR_39940 PF01475 Ferric uptake regulator family AFR_39945 PF09995 AFR_39945 AFR_39950 PF13359 AFR_39950 AFR_39950 PF13613 AFR_39950 AFR_39955 PF12705 PD-(D/E)XK nuclease superfamily AFR_39960 PF01914 AFR_39960 AFR_39965 PF02811 PHP domain AFR_39970 PF03703 AFR_39970 AFR_39985 PF00588 SpoU rRNA Methylase family AFR_39990 PF00085 Thioredoxin AFR_40000 PF13380 CoA binding domain AFR_40005 PF13828 AFR_40005 AFR_40010 PF13561 Enoyl-(Acyl carrier protein) reductase AFR_40015 PF13828 AFR_40015 AFR_40025 PF00892 EamA-like transporter family AFR_40030 PF00702 haloacid dehalogenase-like hydrolase AFR_40040 PF02567 Phenazine biosynthesis-like protein AFR_40045 PF00571 CBS domain AFR_40045 PF03448 MgtE intracellular N domain AFR_40050 PF06210 AFR_40050 AFR_40055 PF01883 Domain of unknown function DUF59 AFR_40055 PF10609 ParA/MinD ATPase like AFR_40065 PF13180 PDZ domain AFR_40065 PF13365 Trypsin-like peptidase domain AFR_40070 PF01596 O-methyltransferase AFR_40075 PF00883 Cytosol aminopeptidase family, catalytic domain AFR_40075 PF02789 Cytosol aminopeptidase family, N-terminal domain AFR_40080 PF11314 AFR_40080 AFR_40085 PF07848 PaaX-like protein AFR_40085 PF08223 PaaX-like protein C-terminal domain AFR_40090 PF00378 Enoyl-CoA hydratase/isomerase family AFR_40095 PF00089 Trypsin AFR_40105 PF03352 Methyladenine glycosylase AFR_40110 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_40120 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AFR_40125 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AFR_40125 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AFR_40130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AFR_40135 PF02254 TrkA-N domain AFR_40135 PF07885 Ion channel AFR_40140 PF09056 Prokaryotic phospholipase A2 AFR_40150 PF09723 AFR_40150 AFR_40160 PF13508 Acetyltransferase (GNAT) domain AFR_40165 PF00490 Delta-aminolevulinic acid dehydratase AFR_40170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AFR_40170 PF02602 Uroporphyrinogen-III synthase HemD AFR_40175 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AFR_40175 PF03900 Porphobilinogen deaminase, C-terminal domain AFR_40180 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AFR_40180 PF01488 Shikimate / quinate 5-dehydrogenase AFR_40180 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AFR_40185 PF02629 CoA binding domain AFR_40185 PF06971 Putative DNA-binding protein N-terminus AFR_40190 PF13242 HAD-hyrolase-like AFR_40195 PF05768 Glutaredoxin-like domain (DUF836) AFR_40200 PF00501 AMP-binding enzyme AFR_40200 PF13193 AMP-binding enzyme C-terminal domain AFR_40205 PF04542 Sigma-70 region 2 AFR_40205 PF08281 Sigma-70, region 4 AFR_40215 PF01553 Acyltransferase AFR_40220 PF01370 NAD dependent epimerase/dehydratase family AFR_40225 PF12728 Helix-turn-helix domain AFR_40230 PF01619 Proline dehydrogenase AFR_40235 PF07336 Protein of unknown function (DUF1470) AFR_40235 PF11706 CGNR zinc finger AFR_40240 PF01261 Xylose isomerase-like TIM barrel AFR_40250 PF00553 Cellulose binding domain AFR_40250 PF13229 Right handed beta helix region AFR_40260 PF00440 Bacterial regulatory proteins, tetR family AFR_40265 PF00106 short chain dehydrogenase AFR_40270 PF00072 Response regulator receiver domain AFR_40270 PF00486 Transcriptional regulatory protein, C terminal AFR_40275 PF00512 His Kinase A (phospho-acceptor) domain AFR_40275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40280 PF01895 PhoU domain AFR_40285 PF00300 Histidine phosphatase superfamily (branch 1) AFR_40290 PF07690 Major Facilitator Superfamily AFR_40295 PF01584 CheW-like domain AFR_40300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_40300 PF08447 PAS fold AFR_40300 PF08448 PAS fold AFR_40305 PF07690 Major Facilitator Superfamily AFR_40310 PF10722 Putative bacterial sensory transduction regulator AFR_40315 PF00534 Glycosyl transferases group 1 AFR_40315 PF13439 Glycosyltransferase Family 4 AFR_40320 PF00106 short chain dehydrogenase AFR_40330 PF02156 Glycosyl hydrolase family 26 AFR_40335 PF00072 Response regulator receiver domain AFR_40340 PF00082 Subtilase family AFR_40340 PF01483 Proprotein convertase P-domain AFR_40340 PF05922 Peptidase inhibitor I9 AFR_40350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40350 PF13188 PAS domain AFR_40355 PF03364 Polyketide cyclase / dehydrase and lipid transport AFR_40365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_40365 PF00672 HAMP domain AFR_40370 PF01551 Peptidase family M23 AFR_40375 PF02599 Global regulator protein family AFR_40380 PF02623 FliW protein AFR_40385 PF00669 Bacterial flagellin N-terminal helical region AFR_40385 PF00700 Bacterial flagellin C-terminal helical region AFR_40390 PF00460 Flagella basal body rod protein AFR_40390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFR_40395 PF05130 FlgN protein AFR_40400 PF00669 Bacterial flagellin N-terminal helical region AFR_40400 PF00700 Bacterial flagellin C-terminal helical region AFR_40405 PF02465 AFR_40405 AFR_40405 PF07195 AFR_40405 AFR_40410 PF02561 Flagellar protein FliS AFR_40420 PF00460 Flagella basal body rod protein AFR_40420 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFR_40425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFR_40430 PF02049 AFR_40430 AFR_40435 PF01514 Secretory protein of YscJ/FliF family AFR_40435 PF08345 AFR_40435 AFR_40440 PF01706 FliG C-terminal domain AFR_40440 PF14841 FliG middle domain AFR_40440 PF14842 FliG N-terminal domain AFR_40445 PF02108 AFR_40445 AFR_40450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AFR_40460 PF00877 NlpC/P60 family AFR_40460 PF01464 Transglycosylase SLT domain AFR_40465 PF02120 Flagellar hook-length control protein FliK AFR_40470 PF03963 AFR_40470 AFR_40475 PF00460 Flagella basal body rod protein AFR_40475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AFR_40480 PF06289 AFR_40480 AFR_40485 PF01618 AFR_40485 AFR_40490 PF00691 OmpA family AFR_40490 PF13677 AFR_40490 AFR_40495 PF03748 AFR_40495 AFR_40500 PF01052 Surface presentation of antigens (SPOA) AFR_40500 PF02154 Flagellar motor switch protein FliM AFR_40505 PF01052 Surface presentation of antigens (SPOA) AFR_40510 PF04347 AFR_40510 AFR_40515 PF00813 AFR_40515 AFR_40520 PF01311 AFR_40520 AFR_40525 PF01312 FlhB HrpN YscU SpaS Family AFR_40530 PF00771 FHIPEP family AFR_40545 PF01594 AFR_40545 AFR_40550 PF13469 Sulfotransferase family AFR_40560 PF00072 Response regulator receiver domain AFR_40565 PF13690 Chemotaxis phosphatase CheX AFR_40570 PF00072 Response regulator receiver domain AFR_40575 PF01739 CheR methyltransferase, SAM binding domain AFR_40575 PF03705 CheR methyltransferase, all-alpha domain AFR_40580 PF00072 Response regulator receiver domain AFR_40580 PF01339 CheB methylesterase AFR_40590 PF01584 CheW-like domain AFR_40595 PF01584 CheW-like domain AFR_40595 PF01627 Hpt domain AFR_40595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40595 PF02895 Signal transducing histidine kinase, homodimeric domain AFR_40600 PF00072 Response regulator receiver domain AFR_40600 PF00486 Transcriptional regulatory protein, C terminal AFR_40605 PF00512 His Kinase A (phospho-acceptor) domain AFR_40610 PF00188 Cysteine-rich secretory protein family AFR_40615 PF01565 FAD binding domain AFR_40615 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AFR_40620 PF07398 AFR_40620 AFR_40620 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_40625 PF00232 Glycosyl hydrolase family 1 AFR_40630 PF00356 Bacterial regulatory proteins, lacI family AFR_40630 PF13377 Periplasmic binding protein-like domain AFR_40635 PF01661 Macro domain AFR_40640 PF07264 Etoposide-induced protein 2 AFR_40655 PF00561 alpha/beta hydrolase fold AFR_40660 PF10724 AFR_40660 AFR_40670 PF01381 Helix-turn-helix AFR_40675 PF06089 AFR_40675 AFR_40680 PF05853 Prokaryotic protein of unknown function (DUF849) AFR_40685 PF01571 Aminomethyltransferase folate-binding domain AFR_40685 PF08669 Glycine cleavage T-protein C-terminal barrel domain AFR_40690 PF01475 Ferric uptake regulator family AFR_40695 PF01063 Aminotransferase class IV AFR_40700 PF08768 Domain of unknown function (DUF1794) AFR_40705 PF02635 DsrE/DsrF-like family AFR_40710 PF04542 Sigma-70 region 2 AFR_40725 PF07210 AFR_40725 AFR_40730 PF00581 Rhodanese-like domain AFR_40735 PF11209 AFR_40735 AFR_40745 PF00486 Transcriptional regulatory protein, C terminal AFR_40750 PF00583 Acetyltransferase (GNAT) family AFR_40755 PF00582 Universal stress protein family AFR_40760 PF00582 Universal stress protein family AFR_40760 PF07690 Major Facilitator Superfamily AFR_40765 PF12849 PBP superfamily domain AFR_40770 PF00528 Binding-protein-dependent transport system inner membrane component AFR_40775 PF00528 Binding-protein-dependent transport system inner membrane component AFR_40780 PF00005 ABC transporter AFR_40785 PF00293 NUDIX domain AFR_40790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AFR_40795 PF01384 AFR_40795 AFR_40800 PF01865 Protein of unknown function DUF47 AFR_40810 PF04542 Sigma-70 region 2 AFR_40810 PF08281 Sigma-70, region 4 AFR_40815 PF04167 Protein of unknown function (DUF402) AFR_40820 PF13307 Helicase C-terminal domain AFR_40825 PF01594 AFR_40825 AFR_40830 PF00166 Chaperonin 10 Kd subunit AFR_40835 PF13649 Methyltransferase domain AFR_40840 PF07054 AFR_40840 AFR_40840 PF13367 AFR_40840 AFR_40845 PF13515 AFR_40845 AFR_40855 PF13223 AFR_40855 AFR_40860 PF01266 FAD dependent oxidoreductase AFR_40860 PF16901 AFR_40860 AFR_40865 PF00578 AhpC/TSA family AFR_40865 PF01638 HxlR-like helix-turn-helix AFR_40870 PF05977 Transmembrane secretion effector AFR_40875 PF00583 Acetyltransferase (GNAT) family AFR_40880 PF01345 AFR_40880 AFR_40885 PF00118 TCP-1/cpn60 chaperonin family AFR_40890 PF00583 Acetyltransferase (GNAT) family AFR_40900 PF00583 Acetyltransferase (GNAT) family AFR_40905 PF00291 Pyridoxal-phosphate dependent enzyme AFR_40910 PF00005 ABC transporter AFR_40915 PF12679 AFR_40915 AFR_40920 PF11662 AFR_40920 AFR_40925 PF00004 ATPase family associated with various cellular activities (AAA) AFR_40925 PF02359 Cell division protein 48 (CDC48), N-terminal domain AFR_40935 PF00005 ABC transporter AFR_40935 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AFR_40935 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_40940 PF12679 AFR_40940 AFR_40955 PF02575 YbaB/EbfC DNA-binding family AFR_40960 PF10824 Protein of unknown function (DUF2580) AFR_40970 PF03713 Domain of unknown function (DUF305) AFR_40975 PF03067 Chitin binding domain AFR_40980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_40985 PF00072 Response regulator receiver domain AFR_40985 PF00486 Transcriptional regulatory protein, C terminal AFR_40995 PF00535 Glycosyl transferase family 2 AFR_41000 PF00534 Glycosyl transferases group 1 AFR_41000 PF13439 Glycosyltransferase Family 4 AFR_41015 PF00455 AFR_41015 AFR_41015 PF08220 DeoR-like helix-turn-helix domain AFR_41025 PF00480 ROK family AFR_41030 PF01979 Amidohydrolase family AFR_41035 PF13577 SnoaL-like domain AFR_41040 PF01569 PAP2 superfamily AFR_41045 PF13365 Trypsin-like peptidase domain AFR_41050 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family AFR_41050 PF13224 AFR_41050 AFR_41055 PF02254 TrkA-N domain AFR_41065 PF00082 Subtilase family AFR_41065 PF04151 Bacterial pre-peptidase C-terminal domain AFR_41075 PF06772 AFR_41075 AFR_41080 PF00583 Acetyltransferase (GNAT) family AFR_41085 PF00005 ABC transporter AFR_41085 PF08402 TOBE domain AFR_41090 PF00012 Hsp70 protein AFR_41090 PF13360 PQQ-like domain AFR_41095 PF00588 SpoU rRNA Methylase family AFR_41095 PF08032 RNA 2'-O ribose methyltransferase substrate binding AFR_41100 PF01406 tRNA synthetases class I (C) catalytic domain AFR_41100 PF09190 DALR domain AFR_41105 PF04480 Protein of unknown function (DUF559) AFR_41110 PF00082 Subtilase family AFR_41115 PF00206 Lyase AFR_41115 PF10415 Fumarase C C-terminus AFR_41135 PF05681 AFR_41135 AFR_41135 PF05683 Fumarase C-terminus AFR_41140 PF13360 PQQ-like domain AFR_41145 PF01037 AsnC family AFR_41145 PF13404 AsnC-type helix-turn-helix domain AFR_41150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AFR_41155 PF06271 AFR_41155 AFR_41160 PF06271 AFR_41160 AFR_41165 PF00155 Aminotransferase class I and II AFR_41170 PF02687 AFR_41170 AFR_41175 PF00005 ABC transporter AFR_41180 PF07730 Histidine kinase AFR_41185 PF00072 Response regulator receiver domain AFR_41185 PF00196 Bacterial regulatory proteins, luxR family AFR_41190 PF07690 Major Facilitator Superfamily AFR_41195 PF00480 ROK family AFR_41200 PF13360 PQQ-like domain AFR_41205 PF10604 Polyketide cyclase / dehydrase and lipid transport AFR_41210 PF01557 Fumarylacetoacetate (FAA) hydrolase family AFR_41210 PF09298 Fumarylacetoacetase N-terminal AFR_41220 PF04209 homogentisate 1,2-dioxygenase AFR_41225 PF00652 Ricin-type beta-trefoil lectin domain AFR_41225 PF01374 Glycosyl hydrolase family 46 AFR_41230 PF00480 ROK family AFR_41235 PF01547 Bacterial extracellular solute-binding protein AFR_41240 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41245 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41250 PF02056 Family 4 glycosyl hydrolase AFR_41250 PF11975 Family 4 glycosyl hydrolase C-terminal domain AFR_41255 PF01869 BadF/BadG/BcrA/BcrD ATPase family AFR_41265 PF01243 Pyridoxamine 5'-phosphate oxidase AFR_41270 PF02542 YgbB family AFR_41275 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AFR_41280 PF02559 CarD-like/TRCF domain AFR_41295 PF00195 Chalcone and stilbene synthases, N-terminal domain AFR_41295 PF02797 Chalcone and stilbene synthases, C-terminal domain AFR_41300 PF02770 Acyl-CoA dehydrogenase, middle domain AFR_41300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_41300 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_41305 PF08241 Methyltransferase domain AFR_41310 PF01040 UbiA prenyltransferase family AFR_41320 PF13481 AAA domain AFR_41325 PF02457 DisA bacterial checkpoint controller nucleotide-binding AFR_41325 PF10635 DisA bacterial checkpoint controller linker region AFR_41325 PF12826 Helix-hairpin-helix motif AFR_41335 PF01327 Polypeptide deformylase AFR_41340 PF13740 ACT domain AFR_41345 PF00633 Helix-hairpin-helix motif AFR_41345 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_41345 PF10576 Iron-sulfur binding domain of endonuclease III AFR_41350 PF14124 AFR_41350 AFR_41355 PF00004 ATPase family associated with various cellular activities (AAA) AFR_41355 PF02151 UvrB/uvrC motif AFR_41355 PF02861 Clp amino terminal domain AFR_41355 PF07724 AAA domain (Cdc48 subfamily) AFR_41355 PF10431 C-terminal, D2-small domain, of ClpB protein AFR_41360 PF11774 Lsr2 AFR_41365 PF00152 tRNA synthetases class II (D, K and N) AFR_41365 PF01336 OB-fold nucleic acid binding domain AFR_41370 PF03309 Type III pantothenate kinase AFR_41375 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AFR_41375 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AFR_41380 PF00890 FAD binding domain AFR_41380 PF02910 Fumarate reductase flavoprotein C-term AFR_41385 PF13845 AFR_41385 AFR_41390 PF02569 Pantoate-beta-alanine ligase AFR_41395 PF10727 Rossmann-like domain AFR_41395 PF10728 Domain of unknown function (DUF2520) AFR_41400 PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase AFR_41405 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AFR_41420 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AFR_41425 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41430 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41435 PF00005 ABC transporter AFR_41455 PF11377 AFR_41455 AFR_41460 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AFR_41465 PF02152 Dihydroneopterin aldolase AFR_41470 PF00809 Pterin binding enzyme AFR_41485 PF12846 AAA-like domain AFR_41500 PF01551 Peptidase family M23 AFR_41515 PF01580 FtsK/SpoIIIE family AFR_41530 PF01042 Endoribonuclease L-PSP AFR_41535 PF01227 GTP cyclohydrolase I AFR_41540 PF00004 ATPase family associated with various cellular activities (AAA) AFR_41540 PF01434 Peptidase family M41 AFR_41545 PF00156 Phosphoribosyl transferase domain AFR_41550 PF01171 PP-loop family AFR_41550 PF09179 TilS substrate binding domain AFR_41555 PF10103 Uncharacterised conserved protein (DUF2342) AFR_41560 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AFR_41565 PF00719 Inorganic pyrophosphatase AFR_41570 PF08817 WXG100 protein secretion system (Wss), protein YukD AFR_41575 PF01580 FtsK/SpoIIIE family AFR_41580 PF00082 Subtilase family AFR_41585 PF02674 AFR_41585 AFR_41585 PF13365 Trypsin-like peptidase domain AFR_41590 PF00293 NUDIX domain AFR_41595 PF00578 AhpC/TSA family AFR_41600 PF00633 Helix-hairpin-helix motif AFR_41600 PF00730 HhH-GPD superfamily base excision DNA repair protein AFR_41605 PF09587 Bacterial capsule synthesis protein PGA_cap AFR_41610 PF00027 Cyclic nucleotide-binding domain AFR_41610 PF13545 Crp-like helix-turn-helix domain AFR_41615 PF01039 Carboxyl transferase domain AFR_41620 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain AFR_41620 PF00364 Biotin-requiring enzyme AFR_41620 PF02785 Biotin carboxylase C-terminal domain AFR_41620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AFR_41625 PF00069 Protein kinase domain AFR_41630 PF00211 Adenylate and Guanylate cyclase catalytic domain AFR_41630 PF13191 AAA ATPase domain AFR_41635 PF00753 Metallo-beta-lactamase superfamily AFR_41640 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease AFR_41645 PF13783 AFR_41645 AFR_41655 PF02374 Anion-transporting ATPase AFR_41660 PF02374 Anion-transporting ATPase AFR_41665 PF02467 AFR_41665 AFR_41670 PF00905 Penicillin binding protein transpeptidase domain AFR_41670 PF00912 Transglycosylase AFR_41675 PF09424 Yqey-like protein AFR_41680 PF12850 Calcineurin-like phosphoesterase superfamily domain AFR_41695 PF05977 Transmembrane secretion effector AFR_41700 PF12840 Helix-turn-helix domain AFR_41705 PF00156 Phosphoribosyl transferase domain AFR_41710 PF08495 AFR_41710 AFR_41710 PF10442 AFR_41710 AFR_41715 PF00563 EAL domain AFR_41715 PF00990 GGDEF domain AFR_41725 PF00182 Chitinase class I AFR_41730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AFR_41735 PF11611 Domain of unknown function (DUF4352) AFR_41740 PF01118 Semialdehyde dehydrogenase, NAD binding domain AFR_41740 PF02774 Semialdehyde dehydrogenase, dimerisation domain AFR_41745 PF00696 Amino acid kinase family AFR_41745 PF01842 ACT domain AFR_41745 PF13840 ACT domain AFR_41755 PF00682 HMGL-like AFR_41755 PF08502 LeuA allosteric (dimerisation) domain AFR_41760 PF07510 AFR_41760 AFR_41770 PF00728 Glycosyl hydrolase family 20, catalytic domain AFR_41770 PF02838 Glycosyl hydrolase family 20, domain 2 AFR_41775 PF00005 ABC transporter AFR_41775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_41780 PF00005 ABC transporter AFR_41780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AFR_41785 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AFR_41795 PF00528 Binding-protein-dependent transport system inner membrane component AFR_41795 PF12911 AFR_41795 AFR_41800 PF00633 Helix-hairpin-helix motif AFR_41800 PF02132 RecR protein AFR_41800 PF13662 Toprim domain AFR_41805 PF02575 YbaB/EbfC DNA-binding family AFR_41810 PF12169 DNA polymerase III subunits gamma and tau domain III AFR_41810 PF13177 DNA polymerase III, delta subunit AFR_41830 PF05977 Transmembrane secretion effector AFR_41835 PF12840 Helix-turn-helix domain AFR_41840 PF13466 STAS domain AFR_41855 PF00582 Universal stress protein family AFR_41860 PF02040 AFR_41860 AFR_41865 PF00462 Glutaredoxin AFR_41870 PF10990 AFR_41870 AFR_41880 PF01048 Phosphorylase superfamily AFR_41885 PF14437 AFR_41885 AFR_41905 PF01551 Peptidase family M23 AFR_41910 PF17164 AFR_41910 AFR_41915 PF02153 Prephenate dehydrogenase AFR_41920 PF04978 Protein of unknown function (DUF664) AFR_41925 PF01008 Initiation factor 2 subunit family AFR_41930 PF02811 PHP domain AFR_41930 PF14716 Helix-hairpin-helix domain AFR_41935 PF05960 Bacterial protein of unknown function (DUF885) AFR_41945 PF00672 HAMP domain AFR_41945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_41945 PF08376 Nitrate and nitrite sensing AFR_41950 PF03259 Roadblock/LC7 domain AFR_41955 PF05331 AFR_41955 AFR_41960 PF03029 Conserved hypothetical ATP binding protein AFR_41970 PF07728 AAA domain (dynein-related subfamily) AFR_41970 PF12458 AFR_41970 AFR_41975 PF01145 SPFH domain / Band 7 family AFR_41980 PF07290 AFR_41980 AFR_41985 PF13641 Glycosyltransferase like family 2 AFR_41990 PF02350 UDP-N-acetylglucosamine 2-epimerase AFR_41995 PF10096 AFR_41995 AFR_42010 PF01738 Dienelactone hydrolase family AFR_42015 PF00553 Cellulose binding domain AFR_42015 PF00704 Glycosyl hydrolases family 18 AFR_42020 PF00440 Bacterial regulatory proteins, tetR family AFR_42025 PF01047 MarR family AFR_42030 PF07690 Major Facilitator Superfamily AFR_42035 PF13671 AAA domain AFR_42040 PF07690 Major Facilitator Superfamily AFR_42045 PF00440 Bacterial regulatory proteins, tetR family AFR_42045 PF02909 Tetracyclin repressor, C-terminal all-alpha domain AFR_42050 PF00990 GGDEF domain AFR_42055 PF04672 S-adenosyl methyltransferase AFR_42070 PF04149 AFR_42070 AFR_42075 PF13560 Helix-turn-helix domain AFR_42090 PF01042 Endoribonuclease L-PSP AFR_42095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AFR_42095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AFR_42100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AFR_42100 PF03466 LysR substrate binding domain AFR_42110 PF01259 SAICAR synthetase AFR_42115 PF00271 Helicase conserved C-terminal domain AFR_42115 PF04851 Type III restriction enzyme, res subunit AFR_42115 PF11907 AFR_42115 AFR_42115 PF13091 PLD-like domain AFR_42120 PF13360 PQQ-like domain AFR_42125 PF00149 Calcineurin-like phosphoesterase AFR_42125 PF02872 5'-nucleotidase, C-terminal domain AFR_42125 PF03372 Endonuclease/Exonuclease/phosphatase family AFR_42130 PF06724 AFR_42130 AFR_42140 PF09362 AFR_42140 AFR_42145 PF12679 AFR_42145 AFR_42150 PF00005 ABC transporter AFR_42155 PF00392 Bacterial regulatory proteins, gntR family AFR_42160 PF13411 MerR HTH family regulatory protein AFR_42165 PF05719 Golgi phosphoprotein 3 (GPP34) AFR_42170 PF13424 Tetratricopeptide repeat AFR_42170 PF13560 Helix-turn-helix domain AFR_42180 PF02517 CAAX protease self-immunity AFR_42185 PF00042 Globin AFR_42185 PF00175 Oxidoreductase NAD-binding domain AFR_42185 PF00970 Oxidoreductase FAD-binding domain AFR_42190 PF01327 Polypeptide deformylase AFR_42190 PF13560 Helix-turn-helix domain AFR_42195 PF06276 Ferric iron reductase FhuF-like transporter AFR_42205 PF13489 Methyltransferase domain AFR_42210 PF01161 Phosphatidylethanolamine-binding protein AFR_42215 PF00512 His Kinase A (phospho-acceptor) domain AFR_42215 PF01590 GAF domain AFR_42215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_42225 PF13302 Acetyltransferase (GNAT) domain AFR_42230 PF00877 NlpC/P60 family AFR_42235 PF03795 YCII-related domain AFR_42240 PF04542 Sigma-70 region 2 AFR_42240 PF08281 Sigma-70, region 4 AFR_42245 PF10021 Uncharacterized protein conserved in bacteria (DUF2263) AFR_42250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AFR_42250 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AFR_42255 PF03992 Antibiotic biosynthesis monooxygenase AFR_42260 PF03358 NADPH-dependent FMN reductase AFR_42265 PF00376 MerR family regulatory protein AFR_42265 PF09278 MerR, DNA binding AFR_42270 PF03551 Transcriptional regulator PadR-like family AFR_42280 PF03551 Transcriptional regulator PadR-like family AFR_42290 PF13175 AAA ATPase domain AFR_42290 PF13304 AAA domain AFR_42295 PF09362 AFR_42295 AFR_42300 PF00652 Ricin-type beta-trefoil lectin domain AFR_42300 PF02055 O-Glycosyl hydrolase family 30 AFR_42300 PF17189 AFR_42300 AFR_42305 PF00652 Ricin-type beta-trefoil lectin domain AFR_42305 PF00704 Glycosyl hydrolases family 18 AFR_42310 PF00107 Zinc-binding dehydrogenase AFR_42310 PF08240 Alcohol dehydrogenase GroES-like domain AFR_42330 PF00376 MerR family regulatory protein AFR_42330 PF09278 MerR, DNA binding AFR_42335 PF00456 Transketolase, thiamine diphosphate binding domain AFR_42340 PF02779 Transketolase, pyrimidine binding domain AFR_42345 PF00665 Integrase core domain AFR_42345 PF13011 AFR_42345 AFR_42355 PF00108 Thiolase, N-terminal domain AFR_42355 PF02803 Thiolase, C-terminal domain AFR_42360 PF10756 AFR_42360 AFR_42365 PF01694 Rhomboid family AFR_42370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AFR_42380 PF05108 Protein of unknown function (DUF690) AFR_42385 PF01544 CorA-like Mg2+ transporter protein AFR_42390 PF00155 Aminotransferase class I and II AFR_42395 PF00483 Nucleotidyl transferase AFR_42400 PF13685 Iron-containing alcohol dehydrogenase AFR_42405 PF01066 CDP-alcohol phosphatidyltransferase AFR_42410 PF14269 AFR_42410 AFR_42415 PF13579 Glycosyl transferase 4-like domain AFR_42415 PF13692 Glycosyl transferases group 1 AFR_42420 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_42420 PF06827 Zinc finger found in FPG and IleRS AFR_42420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AFR_42425 PF02397 AFR_42425 AFR_42425 PF13727 CoA-binding domain AFR_42430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_42430 PF06580 AFR_42430 AFR_42435 PF00072 Response regulator receiver domain AFR_42435 PF04397 LytTr DNA-binding domain AFR_42440 PF00072 Response regulator receiver domain AFR_42440 PF00486 Transcriptional regulatory protein, C terminal AFR_42445 PF00512 His Kinase A (phospho-acceptor) domain AFR_42445 PF00672 HAMP domain AFR_42445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_42450 PF13777 AFR_42450 AFR_42455 PF04341 AFR_42455 AFR_42460 PF00474 Sodium:solute symporter family AFR_42470 PF00005 ABC transporter AFR_42480 PF00579 tRNA synthetases class I (W and Y) AFR_42485 PF01613 Flavin reductase like domain AFR_42490 PF04341 AFR_42490 AFR_42495 PF00474 Sodium:solute symporter family AFR_42500 PF16363 AFR_42500 AFR_42505 PF03816 Cell envelope-related transcriptional attenuator domain AFR_42510 PF03816 Cell envelope-related transcriptional attenuator domain AFR_42515 PF00581 Rhodanese-like domain AFR_42520 PF03009 Glycerophosphoryl diester phosphodiesterase family AFR_42525 PF00512 His Kinase A (phospho-acceptor) domain AFR_42525 PF00989 PAS fold AFR_42525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AFR_42535 PF00722 Glycosyl hydrolases family 16 AFR_42540 PF02274 Amidinotransferase AFR_42555 PF13840 ACT domain AFR_42565 PF00800 Prephenate dehydratase AFR_42565 PF01842 ACT domain AFR_42570 PF01987 Mitochondrial biogenesis AIM24 AFR_42575 PF06262 Possibl zinc metallo-peptidase AFR_42580 PF02566 OsmC-like protein AFR_42590 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AFR_42590 PF02403 Seryl-tRNA synthetase N-terminal domain AFR_42595 PF08282 haloacid dehalogenase-like hydrolase AFR_42600 PF08282 haloacid dehalogenase-like hydrolase AFR_42605 PF10759 AFR_42605 AFR_42610 PF02274 Amidinotransferase AFR_42615 PF01037 AsnC family AFR_42615 PF13404 AsnC-type helix-turn-helix domain AFR_42620 PF09826 AFR_42620 AFR_42635 PF12804 MobA-like NTP transferase domain AFR_42640 PF02634 FdhD/NarQ family AFR_42645 PF09423 PhoD-like phosphatase AFR_42645 PF16655 AFR_42645 AFR_42650 PF13830 AFR_42650 AFR_42655 PF00583 Acetyltransferase (GNAT) family AFR_42660 PF03881 Fructosamine kinase AFR_42665 PF04055 Radical SAM superfamily AFR_42665 PF06463 Molybdenum Cofactor Synthesis C AFR_42665 PF13353 4Fe-4S single cluster domain AFR_42670 PF02597 ThiS family AFR_42675 PF00149 Calcineurin-like phosphoesterase AFR_42680 PF13245 Part of AAA domain AFR_42680 PF13361 UvrD-like helicase C-terminal domain AFR_42690 PF01478 Type IV leader peptidase family AFR_42700 PF13191 AAA ATPase domain AFR_42705 PF00583 Acetyltransferase (GNAT) family AFR_42710 PF07681 AFR_42710 AFR_42715 PF09594 AFR_42715 AFR_42720 PF02391 MoaE protein AFR_42725 PF00994 Probable molybdopterin binding domain AFR_42725 PF03453 MoeA N-terminal region (domain I and II) AFR_42725 PF03454 MoeA C-terminal region (domain IV) AFR_42730 PF00994 Probable molybdopterin binding domain AFR_42735 PF01967 MoaC family AFR_42740 PF00563 EAL domain AFR_42740 PF00990 GGDEF domain AFR_42745 PF09594 AFR_42745 AFR_42750 PF13453 AFR_42750 AFR_42755 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain AFR_42760 PF14431 AFR_42760 AFR_42760 PF14433 AFR_42760 AFR_42765 PF02575 YbaB/EbfC DNA-binding family AFR_42795 PF04607 Region found in RelA / SpoT proteins AFR_42805 PF00772 DnaB-like helicase N terminal domain AFR_42805 PF03796 DnaB-like helicase C terminal domain AFR_42815 PF01281 Ribosomal protein L9, N-terminal domain AFR_42815 PF03948 Ribosomal protein L9, C-terminal domain AFR_42820 PF01084 Ribosomal protein S18 AFR_42825 PF00436 Single-strand binding protein family AFR_42830 PF01250 Ribosomal protein S6 AFR_42840 PF01261 Xylose isomerase-like TIM barrel AFR_42855 PF09594 AFR_42855 AFR_42860 PF00905 Penicillin binding protein transpeptidase domain AFR_42860 PF00912 Transglycosylase AFR_42865 PF17249 AFR_42865 AFR_42870 PF03551 Transcriptional regulator PadR-like family AFR_42875 PF01658 Myo-inositol-1-phosphate synthase AFR_42885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AFR_42890 PF04542 Sigma-70 region 2 AFR_42890 PF08281 Sigma-70, region 4 AFR_42895 PF07676 WD40-like Beta Propeller Repeat AFR_42900 PF01743 Poly A polymerase head domain AFR_42900 PF01966 HD domain AFR_42900 PF12627 Probable RNA and SrmB- binding site of polymerase A AFR_42910 PF03023 AFR_42910 AFR_42915 PF00069 Protein kinase domain AFR_42920 PF04542 Sigma-70 region 2 AFR_42920 PF08281 Sigma-70, region 4 AFR_42930 PF07992 Pyridine nucleotide-disulphide oxidoreductase AFR_42935 PF00085 Thioredoxin AFR_42940 PF01471 Putative peptidoglycan binding domain AFR_42940 PF01520 N-acetylmuramoyl-L-alanine amidase AFR_42950 PF00155 Aminotransferase class I and II AFR_42955 PF01820 D-ala D-ala ligase N-terminus AFR_42955 PF07478 D-ala D-ala ligase C-terminus AFR_42965 PF02195 ParB-like nuclease domain AFR_42970 PF13614 AAA domain AFR_42975 PF02527 rRNA small subunit methyltransferase G AFR_42980 PF01424 R3H domain AFR_42985 PF02096 60Kd inner membrane protein AFR_42990 PF01809 AFR_42990 AFR_42995 PF00825 Ribonuclease P AFR_43000 PF00468 Ribosomal protein L34