AFR_00005 SM00382 ATPases associated with a variety of cellular activities AFR_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain AFR_00010 SM00480 DNA polymerase III beta subunit AFR_00015 SM01350 AFR_00015 AFR_00040 SM00387 Histidine kinase-like ATPases AFR_00040 SM00433 TopoisomeraseII AFR_00045 SM00434 DNA Topoisomerase IV AFR_00105 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_00120 SM00450 Rhodanese Homology Domain AFR_00135 SM00382 ATPases associated with a variety of cellular activities AFR_00155 SM00387 Histidine kinase-like ATPases AFR_00170 SM00878 Biotin carboxylase C-terminal domain AFR_00200 SM00530 Helix-turn-helix XRE-family like proteins AFR_00205 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_00210 SM00867 YceI-like domain AFR_00225 SM00740 AFR_00225 AFR_00265 SM00240 Forkhead associated domain AFR_00270 SM00240 Forkhead associated domain AFR_00275 SM00331 Sigma factor PP2C-like phosphatases AFR_00275 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_00290 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_00295 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_00295 SM00740 AFR_00295 AFR_00335 SM01091 Transporter associated domain AFR_00340 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_00360 SM00530 Helix-turn-helix XRE-family like proteins AFR_00375 SM00530 Helix-turn-helix XRE-family like proteins AFR_00420 SM00331 Sigma factor PP2C-like phosphatases AFR_00435 SM00855 Phosphoglycerate mutase family AFR_00485 SM00861 Transketolase, pyrimidine binding domain AFR_00530 SM00271 DnaJ molecular chaperone homology domain AFR_00535 SM00422 helix_turn_helix, mercury resistance AFR_00565 SM00382 ATPases associated with a variety of cellular activities AFR_00565 SM01086 C-terminal, D2-small domain, of ClpB protein AFR_00590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_00595 SM01007 Class II Aldolase and Adducin N-terminal domain AFR_00680 SM00788 Adenylosuccinate synthetase AFR_00685 SM01209 AFR_00685 AFR_00685 SM01210 AFR_00685 AFR_00695 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_00705 SM00998 Adenylosuccinate lyase C-terminus AFR_00710 SM00020 Trypsin-like serine protease AFR_00720 SM01211 AFR_00720 AFR_00765 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFR_00875 SM00422 helix_turn_helix, mercury resistance AFR_01045 SM00530 Helix-turn-helix XRE-family like proteins AFR_01055 SM00342 helix_turn_helix, arabinose operon control protein AFR_01100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_01100 SM00387 Histidine kinase-like ATPases AFR_01100 SM00388 His Kinase A (phosphoacceptor) domain AFR_01105 SM00448 cheY-homologous receiver domain AFR_01105 SM00862 Transcriptional regulatory protein, C terminal AFR_01120 SM00382 ATPases associated with a variety of cellular activities AFR_01135 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_01140 SM00382 ATPases associated with a variety of cellular activities AFR_01145 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AFR_01180 SM00458 Ricin-type beta-trefoil AFR_01220 SM00387 Histidine kinase-like ATPases AFR_01225 SM00331 Sigma factor PP2C-like phosphatases AFR_01230 SM00387 Histidine kinase-like ATPases AFR_01230 SM00388 His Kinase A (phosphoacceptor) domain AFR_01235 SM00331 Sigma factor PP2C-like phosphatases AFR_01235 SM00448 cheY-homologous receiver domain AFR_01245 SM00382 ATPases associated with a variety of cellular activities AFR_01290 SM00331 Sigma factor PP2C-like phosphatases AFR_01295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_01295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_01295 SM00387 Histidine kinase-like ATPases AFR_01295 SM00388 His Kinase A (phosphoacceptor) domain AFR_01295 SM00448 cheY-homologous receiver domain AFR_01300 SM00448 cheY-homologous receiver domain AFR_01325 SM00855 Phosphoglycerate mutase family AFR_01350 SM00382 ATPases associated with a variety of cellular activities AFR_01355 SM00382 ATPases associated with a variety of cellular activities AFR_01365 SM00354 helix_turn _helix lactose operon repressor AFR_01375 SM00710 Parallel beta-helix repeats AFR_01380 SM00642 Alpha-amylase domain AFR_01385 SM00354 helix_turn _helix lactose operon repressor AFR_01430 SM00344 helix_turn_helix ASNC type AFR_01450 SM00487 DEAD-like helicases superfamily AFR_01450 SM00490 helicase superfamily c-terminal domain AFR_01485 SM00631 AFR_01485 AFR_01525 SM00382 ATPases associated with a variety of cellular activities AFR_01540 SM00382 ATPases associated with a variety of cellular activities AFR_01565 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_01605 SM00458 Ricin-type beta-trefoil AFR_01615 SM00487 DEAD-like helicases superfamily AFR_01615 SM00490 helicase superfamily c-terminal domain AFR_01680 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_01685 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFR_01685 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AFR_01735 SM00346 helix_turn_helix isocitrate lyase regulation AFR_01875 SM00487 DEAD-like helicases superfamily AFR_01875 SM00490 helicase superfamily c-terminal domain AFR_01905 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AFR_01905 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AFR_01905 SM00493 AFR_01905 AFR_01930 SM00382 ATPases associated with a variety of cellular activities AFR_01960 SM00857 Resolvase, N terminal domain AFR_01980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_01980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_01995 SM01266 AFR_01995 AFR_02020 SM00530 Helix-turn-helix XRE-family like proteins AFR_02055 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AFR_02080 SM00487 DEAD-like helicases superfamily AFR_02080 SM00490 helicase superfamily c-terminal domain AFR_02100 SM00357 Cold shock protein domain AFR_02135 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_02150 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_02150 SM00895 AFR_02150 AFR_02255 SM00382 ATPases associated with a variety of cellular activities AFR_02285 SM00382 ATPases associated with a variety of cellular activities AFR_02300 SM00052 Putative diguanylate phosphodiesterase AFR_02300 SM00091 PAS domain AFR_02300 SM00267 diguanylate cyclase AFR_02340 SM00267 diguanylate cyclase AFR_02350 SM00560 LamG-like jellyroll fold domain AFR_02385 SM00450 Rhodanese Homology Domain AFR_02395 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_02445 SM00382 ATPases associated with a variety of cellular activities AFR_02545 SM00382 ATPases associated with a variety of cellular activities AFR_02565 SM00382 ATPases associated with a variety of cellular activities AFR_02565 SM00710 Parallel beta-helix repeats AFR_02575 SM00862 Transcriptional regulatory protein, C terminal AFR_02575 SM01043 Bacterial transcriptional activator domain AFR_02580 SM00862 Transcriptional regulatory protein, C terminal AFR_02580 SM01043 Bacterial transcriptional activator domain AFR_02590 SM00421 helix_turn_helix, Lux Regulon AFR_02635 SM00448 cheY-homologous receiver domain AFR_02640 SM00530 Helix-turn-helix XRE-family like proteins AFR_02655 SM00052 Putative diguanylate phosphodiesterase AFR_02655 SM00267 diguanylate cyclase AFR_02700 SM00822 AFR_02700 AFR_02745 SM00829 Enoylreductase AFR_02750 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_02770 SM00421 helix_turn_helix, Lux Regulon AFR_02770 SM00448 cheY-homologous receiver domain AFR_02790 SM00052 Putative diguanylate phosphodiesterase AFR_02790 SM00267 diguanylate cyclase AFR_02805 SM00858 AFR_02805 AFR_02855 SM00052 Putative diguanylate phosphodiesterase AFR_02855 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_02855 SM00267 diguanylate cyclase AFR_02860 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_02860 SM01134 AFR_02860 AFR_02880 SM00829 Enoylreductase AFR_02895 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_02935 SM00028 Tetratricopeptide repeats AFR_02940 SM00028 Tetratricopeptide repeats AFR_03010 SM00636 AFR_03010 AFR_03050 SM00382 ATPases associated with a variety of cellular activities AFR_03055 SM00822 AFR_03055 AFR_03100 SM00642 Alpha-amylase domain AFR_03125 SM00822 AFR_03125 AFR_03130 SM00530 Helix-turn-helix XRE-family like proteins AFR_03145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_03145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_03150 SM00650 Ribosomal RNA adenine dimethylases AFR_03165 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_03210 SM00354 helix_turn _helix lactose operon repressor AFR_03225 SM00382 ATPases associated with a variety of cellular activities AFR_03230 SM00342 helix_turn_helix, arabinose operon control protein AFR_03265 SM00382 ATPases associated with a variety of cellular activities AFR_03270 SM00354 helix_turn _helix lactose operon repressor AFR_03275 SM01007 Class II Aldolase and Adducin N-terminal domain AFR_03310 SM00387 Histidine kinase-like ATPases AFR_03310 SM00388 His Kinase A (phosphoacceptor) domain AFR_03320 SM00382 ATPases associated with a variety of cellular activities AFR_03335 SM00996 S-adenosyl-L-homocysteine hydrolase AFR_03335 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AFR_03345 SM00354 helix_turn _helix lactose operon repressor AFR_03375 SM00822 AFR_03375 AFR_03425 SM00382 ATPases associated with a variety of cellular activities AFR_03435 SM00421 helix_turn_helix, Lux Regulon AFR_03435 SM00448 cheY-homologous receiver domain AFR_03450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_03455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_03455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_03480 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_03490 SM00267 diguanylate cyclase AFR_03500 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_03520 SM00421 helix_turn_helix, Lux Regulon AFR_03525 SM00829 Enoylreductase AFR_03530 SM00710 Parallel beta-helix repeats AFR_03540 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_03570 SM00822 AFR_03570 AFR_03600 SM00257 Lysin motif AFR_03635 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_03675 SM00631 AFR_03675 AFR_03690 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_03690 SM00458 Ricin-type beta-trefoil AFR_03705 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_03705 SM00458 Ricin-type beta-trefoil AFR_03735 SM00342 helix_turn_helix, arabinose operon control protein AFR_03750 SM00382 ATPases associated with a variety of cellular activities AFR_03780 SM00421 helix_turn_helix, Lux Regulon AFR_03795 SM00633 Glycosyl hydrolase family 10 AFR_03825 SM00421 helix_turn_helix, Lux Regulon AFR_03830 SM00421 helix_turn_helix, Lux Regulon AFR_03855 SM00829 Enoylreductase AFR_03885 SM00346 helix_turn_helix isocitrate lyase regulation AFR_03940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_03940 SM00387 Histidine kinase-like ATPases AFR_03940 SM00388 His Kinase A (phosphoacceptor) domain AFR_03945 SM00448 cheY-homologous receiver domain AFR_03945 SM00862 Transcriptional regulatory protein, C terminal AFR_03955 SM00060 Fibronectin type 3 domain AFR_03985 SM00331 Sigma factor PP2C-like phosphatases AFR_03985 SM00448 cheY-homologous receiver domain AFR_03990 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_03990 SM00387 Histidine kinase-like ATPases AFR_03990 SM00388 His Kinase A (phosphoacceptor) domain AFR_03995 SM00448 cheY-homologous receiver domain AFR_04010 SM00822 AFR_04010 AFR_04025 SM00637 AFR_04025 AFR_04050 SM00822 AFR_04050 AFR_04065 SM00487 DEAD-like helicases superfamily AFR_04065 SM00490 helicase superfamily c-terminal domain AFR_04105 SM00487 DEAD-like helicases superfamily AFR_04105 SM00490 helicase superfamily c-terminal domain AFR_04145 SM00450 Rhodanese Homology Domain AFR_04160 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AFR_04295 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_04295 SM00866 AFR_04295 AFR_04300 SM00458 Ricin-type beta-trefoil AFR_04365 SM00342 helix_turn_helix, arabinose operon control protein AFR_04390 SM00450 Rhodanese Homology Domain AFR_04400 SM00052 Putative diguanylate phosphodiesterase AFR_04400 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_04400 SM00267 diguanylate cyclase AFR_04425 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AFR_04435 SM00382 ATPases associated with a variety of cellular activities AFR_04465 SM00663 RNA polymerase I subunit A N-terminus AFR_04490 SM00838 Elongation factor G C-terminus AFR_04490 SM00889 Elongation factor G, domain IV AFR_04500 SM01403 AFR_04500 AFR_04520 SM01382 AFR_04520 AFR_04520 SM01383 AFR_04520 AFR_04535 SM00322 K homology RNA-binding domain AFR_04555 SM01374 AFR_04555 AFR_04560 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AFR_04650 SM00363 S4 RNA-binding domain AFR_04650 SM01390 AFR_04650 AFR_04655 SM00662 RNA polymerases D AFR_04680 SM00382 ATPases associated with a variety of cellular activities AFR_04740 SM00382 ATPases associated with a variety of cellular activities AFR_04760 SM00387 Histidine kinase-like ATPases AFR_04765 SM00960 Roadblock/LC7 domain AFR_04780 SM00862 Transcriptional regulatory protein, C terminal AFR_04835 SM01005 Alanine racemase, C-terminal domain AFR_04850 SM00986 Uracil DNA glycosylase superfamily AFR_04850 SM00987 UreE urease accessory protein, C-terminal domain AFR_04880 SM00382 ATPases associated with a variety of cellular activities AFR_04895 SM00382 ATPases associated with a variety of cellular activities AFR_04915 SM00883 Chaperonin 10 Kd subunit AFR_04940 SM00421 helix_turn_helix, Lux Regulon AFR_04950 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_04950 SM01240 AFR_04950 AFR_04955 SM01240 AFR_04955 AFR_05025 SM00421 helix_turn_helix, Lux Regulon AFR_05025 SM00448 cheY-homologous receiver domain AFR_05045 SM00382 ATPases associated with a variety of cellular activities AFR_05050 SM00382 ATPases associated with a variety of cellular activities AFR_05060 SM00830 Chorismate mutase type II AFR_05095 SM00881 CoA binding domain AFR_05115 SM00798 AICARFT/IMPCHase bienzyme AFR_05115 SM00851 MGS-like domain AFR_05130 SM00849 Metallo-beta-lactamase superfamily AFR_05140 SM01329 AFR_05140 AFR_05150 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_05150 SM01134 AFR_05150 AFR_05220 SM00382 ATPases associated with a variety of cellular activities AFR_05230 SM00382 ATPases associated with a variety of cellular activities AFR_05245 SM00422 helix_turn_helix, mercury resistance AFR_05265 SM00108 Bulb-type mannose-specific lectin AFR_05290 SM00487 DEAD-like helicases superfamily AFR_05290 SM00490 helicase superfamily c-terminal domain AFR_05290 SM00982 AFR_05290 AFR_05290 SM01058 CarD-like/TRCF domain AFR_05325 SM01192 AFR_05325 AFR_05325 SM01193 AFR_05325 AFR_05365 SM00986 Uracil DNA glycosylase superfamily AFR_05365 SM00987 UreE urease accessory protein, C-terminal domain AFR_05430 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_05445 SM00267 diguanylate cyclase AFR_05450 SM00880 AFR_05450 AFR_05450 SM01118 AFR_05450 AFR_05475 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFR_05540 SM00052 Putative diguanylate phosphodiesterase AFR_05540 SM00267 diguanylate cyclase AFR_05555 SM01001 AIR carboxylase AFR_05565 SM00984 UDP binding domain AFR_05580 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_05590 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_05595 SM00530 Helix-turn-helix XRE-family like proteins AFR_05600 SM00849 Metallo-beta-lactamase superfamily AFR_05660 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_05740 SM00530 Helix-turn-helix XRE-family like proteins AFR_05765 SM00448 cheY-homologous receiver domain AFR_05765 SM00862 Transcriptional regulatory protein, C terminal AFR_05770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_05770 SM00387 Histidine kinase-like ATPases AFR_05770 SM00388 His Kinase A (phosphoacceptor) domain AFR_05800 SM00957 SecA DEAD-like domain AFR_05800 SM00958 SecA preprotein cross-linking domain AFR_05810 SM00344 helix_turn_helix ASNC type AFR_05815 SM00450 Rhodanese Homology Domain AFR_05840 SM00937 AFR_05840 AFR_05845 SM00382 ATPases associated with a variety of cellular activities AFR_05865 SM00637 AFR_05865 AFR_05880 SM00421 helix_turn_helix, Lux Regulon AFR_05910 SM00862 Transcriptional regulatory protein, C terminal AFR_05910 SM01043 Bacterial transcriptional activator domain AFR_05930 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_05940 SM00422 helix_turn_helix, mercury resistance AFR_05970 SM00842 Cell division protein FtsA AFR_05990 SM00382 ATPases associated with a variety of cellular activities AFR_05995 SM00382 ATPases associated with a variety of cellular activities AFR_06000 SM00342 helix_turn_helix, arabinose operon control protein AFR_06030 SM00448 cheY-homologous receiver domain AFR_06035 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_06035 SM00387 Histidine kinase-like ATPases AFR_06035 SM00388 His Kinase A (phosphoacceptor) domain AFR_06040 SM00448 cheY-homologous receiver domain AFR_06045 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_06055 SM00052 Putative diguanylate phosphodiesterase AFR_06055 SM00267 diguanylate cyclase AFR_06100 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_06100 SM00331 Sigma factor PP2C-like phosphatases AFR_06110 SM00943 Bifunctional DNA primase/polymerase, N-terminal AFR_06165 SM00382 ATPases associated with a variety of cellular activities AFR_06175 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_06175 SM00895 AFR_06175 AFR_06205 SM00382 ATPases associated with a variety of cellular activities AFR_06210 SM00342 helix_turn_helix, arabinose operon control protein AFR_06225 SM00052 Putative diguanylate phosphodiesterase AFR_06225 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_06225 SM00267 diguanylate cyclase AFR_06235 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_06250 SM00829 Enoylreductase AFR_06255 SM00849 Metallo-beta-lactamase superfamily AFR_06275 SM00342 helix_turn_helix, arabinose operon control protein AFR_06320 SM00421 helix_turn_helix, Lux Regulon AFR_06340 SM00232 JAB/MPN domain AFR_06360 SM00849 Metallo-beta-lactamase superfamily AFR_06385 SM00382 ATPases associated with a variety of cellular activities AFR_06390 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_06450 SM00507 HNH nucleases AFR_06470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_06470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_06510 SM00479 AFR_06510 AFR_06525 SM00943 Bifunctional DNA primase/polymerase, N-terminal AFR_06595 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_06620 SM00862 Transcriptional regulatory protein, C terminal AFR_06620 SM01043 Bacterial transcriptional activator domain AFR_06655 SM00382 ATPases associated with a variety of cellular activities AFR_06670 SM00382 ATPases associated with a variety of cellular activities AFR_06710 SM00421 helix_turn_helix, Lux Regulon AFR_06710 SM00448 cheY-homologous receiver domain AFR_06715 SM00387 Histidine kinase-like ATPases AFR_06725 SM00382 ATPases associated with a variety of cellular activities AFR_06730 SM00382 ATPases associated with a variety of cellular activities AFR_06740 SM00422 helix_turn_helix, mercury resistance AFR_06745 SM00060 Fibronectin type 3 domain AFR_06770 SM00028 Tetratricopeptide repeats AFR_06770 SM00862 Transcriptional regulatory protein, C terminal AFR_06770 SM01043 Bacterial transcriptional activator domain AFR_06780 SM00448 cheY-homologous receiver domain AFR_06835 SM00344 helix_turn_helix ASNC type AFR_06880 SM00382 ATPases associated with a variety of cellular activities AFR_06905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_06965 SM00387 Histidine kinase-like ATPases AFR_06970 SM00960 Roadblock/LC7 domain AFR_06985 SM00862 Transcriptional regulatory protein, C terminal AFR_06985 SM01043 Bacterial transcriptional activator domain AFR_07000 SM00327 von Willebrand factor (vWF) type A domain AFR_07005 SM00331 Sigma factor PP2C-like phosphatases AFR_07010 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_07035 SM00642 Alpha-amylase domain AFR_07075 SM00822 AFR_07075 AFR_07125 SM01012 AFR_07125 AFR_07140 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_07150 SM00862 Transcriptional regulatory protein, C terminal AFR_07150 SM01043 Bacterial transcriptional activator domain AFR_07155 SM00421 helix_turn_helix, Lux Regulon AFR_07155 SM00448 cheY-homologous receiver domain AFR_07175 SM00382 ATPases associated with a variety of cellular activities AFR_07185 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_07205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_07205 SM00387 Histidine kinase-like ATPases AFR_07205 SM00388 His Kinase A (phosphoacceptor) domain AFR_07210 SM00448 cheY-homologous receiver domain AFR_07210 SM00862 Transcriptional regulatory protein, C terminal AFR_07225 SM00382 ATPases associated with a variety of cellular activities AFR_07390 SM00382 ATPases associated with a variety of cellular activities AFR_07430 SM00507 HNH nucleases AFR_07530 SM00342 helix_turn_helix, arabinose operon control protein AFR_07550 SM00382 ATPases associated with a variety of cellular activities AFR_07550 SM00994 ClpX C4-type zinc finger AFR_07550 SM01086 C-terminal, D2-small domain, of ClpB protein AFR_07610 SM00562 AFR_07610 AFR_07630 SM00563 Phosphate acyltransferases AFR_07650 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_07650 SM00091 PAS domain AFR_07650 SM00331 Sigma factor PP2C-like phosphatases AFR_07660 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_07670 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_07715 SM00091 PAS domain AFR_07715 SM00387 Histidine kinase-like ATPases AFR_07715 SM00448 cheY-homologous receiver domain AFR_07730 SM00855 Phosphoglycerate mutase family AFR_07755 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_07760 SM00849 Metallo-beta-lactamase superfamily AFR_07805 SM00838 Elongation factor G C-terminus AFR_07815 SM00091 PAS domain AFR_07830 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_07845 SM00271 DnaJ molecular chaperone homology domain AFR_07865 SM00382 ATPases associated with a variety of cellular activities AFR_07870 SM00923 MbtH-like protein AFR_07880 SM00382 ATPases associated with a variety of cellular activities AFR_07935 SM01217 AFR_07935 AFR_07965 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_07965 SM01091 Transporter associated domain AFR_08030 SM00481 DNA polymerase alpha chain like domain AFR_08045 SM00382 ATPases associated with a variety of cellular activities AFR_08075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_08085 SM00382 ATPases associated with a variety of cellular activities AFR_08135 SM00960 Roadblock/LC7 domain AFR_08160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_08160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_08165 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_08170 SM00400 zinc finger AFR_08170 SM00493 AFR_08170 AFR_08170 SM00766 DNA primase DnaG DnaB-binding AFR_08180 SM00382 ATPases associated with a variety of cellular activities AFR_08205 SM00382 ATPases associated with a variety of cellular activities AFR_08285 SM00320 WD40 repeats AFR_08325 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_08335 SM00226 Low molecular weight phosphatase family AFR_08345 SM00028 Tetratricopeptide repeats AFR_08390 SM00342 helix_turn_helix, arabinose operon control protein AFR_08395 SM00382 ATPases associated with a variety of cellular activities AFR_08435 SM00530 Helix-turn-helix XRE-family like proteins AFR_08475 SM00421 helix_turn_helix, Lux Regulon AFR_08495 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_08495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_08505 SM01120 AFR_08505 AFR_08510 SM00836 DALR anticodon binding domain AFR_08510 SM01016 Arginyl tRNA synthetase N terminal dom AFR_08535 SM00382 ATPases associated with a variety of cellular activities AFR_08565 SM00560 LamG-like jellyroll fold domain AFR_08570 SM00422 helix_turn_helix, mercury resistance AFR_08570 SM00871 Bacterial transcription activator, effector binding domain AFR_08575 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_08615 SM00829 Enoylreductase AFR_08655 SM00947 Carbonic anhydrase AFR_08675 SM00342 helix_turn_helix, arabinose operon control protein AFR_08680 SM00829 Enoylreductase AFR_08685 SM00825 Beta-ketoacyl synthase AFR_08700 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFR_08740 SM00458 Ricin-type beta-trefoil AFR_08740 SM00636 AFR_08740 AFR_08760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_08760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_08780 SM00382 ATPases associated with a variety of cellular activities AFR_08790 SM00861 Transketolase, pyrimidine binding domain AFR_08860 SM00530 Helix-turn-helix XRE-family like proteins AFR_08875 SM00943 Bifunctional DNA primase/polymerase, N-terminal AFR_08880 SM00530 Helix-turn-helix XRE-family like proteins AFR_08900 SM00855 Phosphoglycerate mutase family AFR_08905 SM00636 AFR_08905 AFR_08920 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_08960 SM00387 Histidine kinase-like ATPases AFR_08960 SM00388 His Kinase A (phosphoacceptor) domain AFR_08965 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_09010 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFR_09025 SM00955 AFR_09025 AFR_09045 SM01230 AFR_09045 AFR_09100 SM00862 Transcriptional regulatory protein, C terminal AFR_09100 SM01043 Bacterial transcriptional activator domain AFR_09115 SM01230 AFR_09115 AFR_09155 SM00255 Toll - interleukin 1 - resistance AFR_09225 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_09305 SM00028 Tetratricopeptide repeats AFR_09320 SM00382 ATPases associated with a variety of cellular activities AFR_09325 SM00530 Helix-turn-helix XRE-family like proteins AFR_09465 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_09465 SM00954 Region found in RelA / SpoT proteins AFR_09470 SM00465 GIY-YIG type nucleases (URI domain) AFR_09470 SM00479 AFR_09470 AFR_09495 SM00382 ATPases associated with a variety of cellular activities AFR_09515 SM00382 ATPases associated with a variety of cellular activities AFR_09535 SM00421 helix_turn_helix, Lux Regulon AFR_09535 SM00448 cheY-homologous receiver domain AFR_09540 SM00387 Histidine kinase-like ATPases AFR_09585 SM00563 Phosphate acyltransferases AFR_09590 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_09590 SM00419 helix_turn_helix, cAMP Regulatory protein AFR_09645 SM00495 Chitin-binding domain type 3 AFR_09645 SM00636 AFR_09645 AFR_09665 SM00829 Enoylreductase AFR_09675 SM00530 Helix-turn-helix XRE-family like proteins AFR_09685 SM00518 AP endonuclease family 2 AFR_09690 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_09690 SM00740 AFR_09690 AFR_09735 SM00507 HNH nucleases AFR_09740 SM00479 AFR_09740 AFR_09745 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_09820 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_09885 SM00481 DNA polymerase alpha chain like domain AFR_09920 SM00460 Transglutaminase/protease-like homologues AFR_10025 SM00864 Tubulin/FtsZ family, GTPase domain AFR_10025 SM00865 Tubulin/FtsZ family, C-terminal domain AFR_10055 SM01152 AFR_10055 AFR_10090 SM00481 DNA polymerase alpha chain like domain AFR_10100 SM00464 Found in ATP-dependent protease La (LON) AFR_10125 SM01211 AFR_10125 AFR_10170 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_10215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_10215 SM00387 Histidine kinase-like ATPases AFR_10215 SM00388 His Kinase A (phosphoacceptor) domain AFR_10220 SM00448 cheY-homologous receiver domain AFR_10220 SM00862 Transcriptional regulatory protein, C terminal AFR_10230 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_10245 SM00382 ATPases associated with a variety of cellular activities AFR_10250 SM00382 ATPases associated with a variety of cellular activities AFR_10255 SM00363 S4 RNA-binding domain AFR_10255 SM01390 AFR_10255 AFR_10275 SM00382 ATPases associated with a variety of cellular activities AFR_10355 SM00327 von Willebrand factor (vWF) type A domain AFR_10385 SM00448 cheY-homologous receiver domain AFR_10385 SM01012 AFR_10385 AFR_10405 SM00382 ATPases associated with a variety of cellular activities AFR_10410 SM00382 ATPases associated with a variety of cellular activities AFR_10415 SM00062 Bacterial periplasmic substrate-binding proteins AFR_10425 SM00382 ATPases associated with a variety of cellular activities AFR_10430 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFR_10430 SM00474 3'-5' exonuclease AFR_10430 SM00475 5'-3' exonuclease AFR_10430 SM00482 DNA polymerase A domain AFR_10435 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_10455 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_10465 SM00487 DEAD-like helicases superfamily AFR_10465 SM00490 helicase superfamily c-terminal domain AFR_10490 SM00838 Elongation factor G C-terminus AFR_10500 SM00649 Ribosomal protein L11/L12 AFR_10515 SM00849 Metallo-beta-lactamase superfamily AFR_10535 SM00382 ATPases associated with a variety of cellular activities AFR_10545 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_10545 SM00465 GIY-YIG type nucleases (URI domain) AFR_10565 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_10640 SM00861 Transketolase, pyrimidine binding domain AFR_10680 SM00382 ATPases associated with a variety of cellular activities AFR_10720 SM00346 helix_turn_helix isocitrate lyase regulation AFR_10735 SM00855 Phosphoglycerate mutase family AFR_10750 SM00530 Helix-turn-helix XRE-family like proteins AFR_10755 SM00530 Helix-turn-helix XRE-family like proteins AFR_10780 SM00382 ATPases associated with a variety of cellular activities AFR_10795 SM00382 ATPases associated with a variety of cellular activities AFR_10830 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_10835 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AFR_10840 SM00986 Uracil DNA glycosylase superfamily AFR_10840 SM00987 UreE urease accessory protein, C-terminal domain AFR_10850 SM00822 AFR_10850 AFR_10855 SM00530 Helix-turn-helix XRE-family like proteins AFR_10905 SM00090 RIO-like kinase AFR_10915 SM01230 AFR_10915 AFR_10925 SM00862 Transcriptional regulatory protein, C terminal AFR_10970 SM01011 Aminopeptidase P, N-terminal domain AFR_11015 SM00327 von Willebrand factor (vWF) type A domain AFR_11030 SM00421 helix_turn_helix, Lux Regulon AFR_11030 SM00448 cheY-homologous receiver domain AFR_11040 SM00822 AFR_11040 AFR_11075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_11075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_11080 SM00530 Helix-turn-helix XRE-family like proteins AFR_11105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_11125 SM00244 prohibitin homologues AFR_11225 SM01217 AFR_11225 AFR_11235 SM00482 DNA polymerase A domain AFR_11240 SM00382 ATPases associated with a variety of cellular activities AFR_11250 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_11265 SM00960 Roadblock/LC7 domain AFR_11270 SM00387 Histidine kinase-like ATPases AFR_11305 SM00421 helix_turn_helix, Lux Regulon AFR_11305 SM00448 cheY-homologous receiver domain AFR_11335 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_11350 SM00422 helix_turn_helix, mercury resistance AFR_11350 SM00871 Bacterial transcription activator, effector binding domain AFR_11410 SM00382 ATPases associated with a variety of cellular activities AFR_11445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_11445 SM00387 Histidine kinase-like ATPases AFR_11445 SM00388 His Kinase A (phosphoacceptor) domain AFR_11450 SM00448 cheY-homologous receiver domain AFR_11450 SM00862 Transcriptional regulatory protein, C terminal AFR_11475 SM00448 cheY-homologous receiver domain AFR_11480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_11480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_11480 SM00387 Histidine kinase-like ATPases AFR_11480 SM00388 His Kinase A (phosphoacceptor) domain AFR_11490 SM00354 helix_turn _helix lactose operon repressor AFR_11495 SM00642 Alpha-amylase domain AFR_11530 SM00867 YceI-like domain AFR_11540 SM00382 ATPases associated with a variety of cellular activities AFR_11560 SM00458 Ricin-type beta-trefoil AFR_11565 SM00387 Histidine kinase-like ATPases AFR_11565 SM00388 His Kinase A (phosphoacceptor) domain AFR_11570 SM00448 cheY-homologous receiver domain AFR_11575 SM00567 E-Z type HEAT repeats AFR_11590 SM00028 Tetratricopeptide repeats AFR_11590 SM00530 Helix-turn-helix XRE-family like proteins AFR_11595 SM00331 Sigma factor PP2C-like phosphatases AFR_11600 SM00014 Acid phosphatase homologues AFR_11605 SM00421 helix_turn_helix, Lux Regulon AFR_11625 SM00984 UDP binding domain AFR_11770 SM00014 Acid phosphatase homologues AFR_11800 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_11805 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_11810 SM00829 Enoylreductase AFR_11840 SM00487 DEAD-like helicases superfamily AFR_11840 SM00490 helicase superfamily c-terminal domain AFR_11850 SM00342 helix_turn_helix, arabinose operon control protein AFR_11855 SM00421 helix_turn_helix, Lux Regulon AFR_11865 SM00342 helix_turn_helix, arabinose operon control protein AFR_11880 SM00530 Helix-turn-helix XRE-family like proteins AFR_11910 SM00052 Putative diguanylate phosphodiesterase AFR_11910 SM00267 diguanylate cyclase AFR_11915 SM00822 AFR_11915 AFR_11925 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_11935 SM00421 helix_turn_helix, Lux Regulon AFR_11955 SM00862 Transcriptional regulatory protein, C terminal AFR_11955 SM01043 Bacterial transcriptional activator domain AFR_12015 SM00331 Sigma factor PP2C-like phosphatases AFR_12020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_12035 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_12040 SM00460 Transglutaminase/protease-like homologues AFR_12055 SM00060 Fibronectin type 3 domain AFR_12080 SM00382 ATPases associated with a variety of cellular activities AFR_12115 SM00567 E-Z type HEAT repeats AFR_12125 SM00357 Cold shock protein domain AFR_12180 SM00342 helix_turn_helix, arabinose operon control protein AFR_12200 SM01022 AFR_12200 AFR_12275 SM00422 helix_turn_helix, mercury resistance AFR_12280 SM00421 helix_turn_helix, Lux Regulon AFR_12325 SM00382 ATPases associated with a variety of cellular activities AFR_12325 SM00421 helix_turn_helix, Lux Regulon AFR_12340 SM00422 helix_turn_helix, mercury resistance AFR_12350 SM00248 ankyrin repeats AFR_12360 SM00421 helix_turn_helix, Lux Regulon AFR_12360 SM00448 cheY-homologous receiver domain AFR_12365 SM00331 Sigma factor PP2C-like phosphatases AFR_12400 SM00637 AFR_12400 AFR_12410 SM00823 Phosphopantetheine attachment site AFR_12415 SM00823 Phosphopantetheine attachment site AFR_12425 SM00923 MbtH-like protein AFR_12440 SM00421 helix_turn_helix, Lux Regulon AFR_12440 SM00448 cheY-homologous receiver domain AFR_12480 SM00421 helix_turn_helix, Lux Regulon AFR_12485 SM00387 Histidine kinase-like ATPases AFR_12495 SM00637 AFR_12495 AFR_12515 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_12515 SM00091 PAS domain AFR_12515 SM00387 Histidine kinase-like ATPases AFR_12515 SM00388 His Kinase A (phosphoacceptor) domain AFR_12540 SM00421 helix_turn_helix, Lux Regulon AFR_12540 SM00448 cheY-homologous receiver domain AFR_12555 SM00458 Ricin-type beta-trefoil AFR_12565 SM00382 ATPases associated with a variety of cellular activities AFR_12585 SM00346 helix_turn_helix isocitrate lyase regulation AFR_12605 SM00530 Helix-turn-helix XRE-family like proteins AFR_12610 SM00829 Enoylreductase AFR_12615 SM00829 Enoylreductase AFR_12620 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_12705 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_12705 SM00895 AFR_12705 AFR_12710 SM01329 AFR_12710 AFR_12715 SM00342 helix_turn_helix, arabinose operon control protein AFR_12720 SM00829 Enoylreductase AFR_12770 SM00530 Helix-turn-helix XRE-family like proteins AFR_12790 SM00382 ATPases associated with a variety of cellular activities AFR_12835 SM00458 Ricin-type beta-trefoil AFR_12840 SM00458 Ricin-type beta-trefoil AFR_12850 SM00382 ATPases associated with a variety of cellular activities AFR_12900 SM00530 Helix-turn-helix XRE-family like proteins AFR_12920 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_12930 SM00830 Chorismate mutase type II AFR_12940 SM00421 helix_turn_helix, Lux Regulon AFR_12940 SM00448 cheY-homologous receiver domain AFR_12955 SM00342 helix_turn_helix, arabinose operon control protein AFR_12960 SM00530 Helix-turn-helix XRE-family like proteins AFR_13015 SM00829 Enoylreductase AFR_13025 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_13030 SM00822 AFR_13030 AFR_13075 SM00382 ATPases associated with a variety of cellular activities AFR_13120 SM00872 Alpha mannosidase, middle domain AFR_13135 SM00422 helix_turn_helix, mercury resistance AFR_13140 SM00342 helix_turn_helix, arabinose operon control protein AFR_13150 SM00448 cheY-homologous receiver domain AFR_13150 SM00862 Transcriptional regulatory protein, C terminal AFR_13155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_13155 SM00387 Histidine kinase-like ATPases AFR_13155 SM00388 His Kinase A (phosphoacceptor) domain AFR_13165 SM00530 Helix-turn-helix XRE-family like proteins AFR_13180 SM00354 helix_turn _helix lactose operon repressor AFR_13210 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_13215 SM00829 Enoylreductase AFR_13235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_13280 SM00020 Trypsin-like serine protease AFR_13320 SM00448 cheY-homologous receiver domain AFR_13320 SM00862 Transcriptional regulatory protein, C terminal AFR_13325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_13325 SM00387 Histidine kinase-like ATPases AFR_13325 SM00388 His Kinase A (phosphoacceptor) domain AFR_13345 SM00530 Helix-turn-helix XRE-family like proteins AFR_13355 SM00642 Alpha-amylase domain AFR_13395 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_13415 SM00860 SMI1 / KNR4 family AFR_13430 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_13445 SM00960 Roadblock/LC7 domain AFR_13450 SM00387 Histidine kinase-like ATPases AFR_13455 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_13455 SM00895 AFR_13455 AFR_13465 SM00382 ATPases associated with a variety of cellular activities AFR_13465 SM00464 Found in ATP-dependent protease La (LON) AFR_13485 SM00822 AFR_13485 AFR_13515 SM00822 AFR_13515 AFR_13520 SM00530 Helix-turn-helix XRE-family like proteins AFR_13535 SM00530 Helix-turn-helix XRE-family like proteins AFR_13540 SM00822 AFR_13540 AFR_13555 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_13570 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_13625 SM00530 Helix-turn-helix XRE-family like proteins AFR_13635 SM00530 Helix-turn-helix XRE-family like proteins AFR_13685 SM00342 helix_turn_helix, arabinose operon control protein AFR_13720 SM00020 Trypsin-like serine protease AFR_13735 SM00421 helix_turn_helix, Lux Regulon AFR_13735 SM00448 cheY-homologous receiver domain AFR_13755 SM00829 Enoylreductase AFR_13760 SM00422 helix_turn_helix, mercury resistance AFR_13785 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_13785 SM01232 AFR_13785 AFR_13795 SM00862 Transcriptional regulatory protein, C terminal AFR_13795 SM01043 Bacterial transcriptional activator domain AFR_13825 SM00387 Histidine kinase-like ATPases AFR_13825 SM00388 His Kinase A (phosphoacceptor) domain AFR_13855 SM00530 Helix-turn-helix XRE-family like proteins AFR_13925 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_13940 SM00028 Tetratricopeptide repeats AFR_13940 SM00267 diguanylate cyclase AFR_13965 SM00530 Helix-turn-helix XRE-family like proteins AFR_13970 SM00822 AFR_13970 AFR_13995 SM00382 ATPases associated with a variety of cellular activities AFR_14000 SM00382 ATPases associated with a variety of cellular activities AFR_14060 SM00387 Histidine kinase-like ATPases AFR_14065 SM00421 helix_turn_helix, Lux Regulon AFR_14065 SM00448 cheY-homologous receiver domain AFR_14105 SM00052 Putative diguanylate phosphodiesterase AFR_14105 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_14110 SM00728 Clostridial hydrophobic, with a conserved W residue, domain. AFR_14120 SM00998 Adenylosuccinate lyase C-terminus AFR_14135 SM00331 Sigma factor PP2C-like phosphatases AFR_14150 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_14150 SM00895 AFR_14150 AFR_14170 SM00422 helix_turn_helix, mercury resistance AFR_14170 SM00871 Bacterial transcription activator, effector binding domain AFR_14185 SM00052 Putative diguanylate phosphodiesterase AFR_14185 SM00267 diguanylate cyclase AFR_14215 SM00564 beta-propeller repeat AFR_14220 SM00829 Enoylreductase AFR_14235 SM00342 helix_turn_helix, arabinose operon control protein AFR_14235 SM00871 Bacterial transcription activator, effector binding domain AFR_14300 SM00382 ATPases associated with a variety of cellular activities AFR_14330 SM00458 Ricin-type beta-trefoil AFR_14335 SM00861 Transketolase, pyrimidine binding domain AFR_14400 SM00822 AFR_14400 AFR_14425 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFR_14490 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_14490 SM01012 AFR_14490 AFR_14495 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_14495 SM01012 AFR_14495 AFR_14500 SM01012 AFR_14500 AFR_14505 SM00530 Helix-turn-helix XRE-family like proteins AFR_14510 SM00829 Enoylreductase AFR_14535 SM00357 Cold shock protein domain AFR_14545 SM00342 helix_turn_helix, arabinose operon control protein AFR_14550 SM00421 helix_turn_helix, Lux Regulon AFR_14575 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_14580 SM00342 helix_turn_helix, arabinose operon control protein AFR_14590 SM00382 ATPases associated with a variety of cellular activities AFR_14595 SM00382 ATPases associated with a variety of cellular activities AFR_14650 SM00342 helix_turn_helix, arabinose operon control protein AFR_14655 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_14655 SM01012 AFR_14655 AFR_14700 SM00421 helix_turn_helix, Lux Regulon AFR_14715 SM00829 Enoylreductase AFR_14760 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_14765 SM00637 AFR_14765 AFR_14770 SM00458 Ricin-type beta-trefoil AFR_14810 SM00421 helix_turn_helix, Lux Regulon AFR_14810 SM00448 cheY-homologous receiver domain AFR_14815 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_14840 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_14845 SM00829 Enoylreductase AFR_14850 SM00530 Helix-turn-helix XRE-family like proteins AFR_14865 SM00862 Transcriptional regulatory protein, C terminal AFR_14865 SM01043 Bacterial transcriptional activator domain AFR_14875 SM00342 helix_turn_helix, arabinose operon control protein AFR_14890 SM00530 Helix-turn-helix XRE-family like proteins AFR_14895 SM00637 AFR_14895 AFR_14900 SM00637 AFR_14900 AFR_14905 SM00637 AFR_14905 AFR_14910 SM00633 Glycosyl hydrolase family 10 AFR_14910 SM00637 AFR_14910 AFR_14935 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_14980 SM00458 Ricin-type beta-trefoil AFR_14980 SM00758 AFR_14980 AFR_15005 SM00849 Metallo-beta-lactamase superfamily AFR_15015 SM00612 AFR_15015 AFR_15020 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_15045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_15045 SM00387 Histidine kinase-like ATPases AFR_15045 SM00388 His Kinase A (phosphoacceptor) domain AFR_15050 SM00448 cheY-homologous receiver domain AFR_15050 SM00862 Transcriptional regulatory protein, C terminal AFR_15055 SM00382 ATPases associated with a variety of cellular activities AFR_15110 SM00829 Enoylreductase AFR_15130 SM00382 ATPases associated with a variety of cellular activities AFR_15140 SM00560 LamG-like jellyroll fold domain AFR_15140 SM00758 AFR_15140 AFR_15160 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AFR_15180 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_15180 SM00895 AFR_15180 AFR_15245 SM00342 helix_turn_helix, arabinose operon control protein AFR_15340 SM00530 Helix-turn-helix XRE-family like proteins AFR_15345 SM00829 Enoylreductase AFR_15360 SM00530 Helix-turn-helix XRE-family like proteins AFR_15375 SM00382 ATPases associated with a variety of cellular activities AFR_15390 SM00267 diguanylate cyclase AFR_15425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_15425 SM00387 Histidine kinase-like ATPases AFR_15425 SM00388 His Kinase A (phosphoacceptor) domain AFR_15430 SM00448 cheY-homologous receiver domain AFR_15430 SM00862 Transcriptional regulatory protein, C terminal AFR_15455 SM00822 AFR_15455 AFR_15460 SM00342 helix_turn_helix, arabinose operon control protein AFR_15465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_15465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_15480 SM00458 Ricin-type beta-trefoil AFR_15525 SM00823 Phosphopantetheine attachment site AFR_15535 SM00758 AFR_15535 AFR_15545 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_15600 SM00342 helix_turn_helix, arabinose operon control protein AFR_15600 SM00871 Bacterial transcription activator, effector binding domain AFR_15620 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_15670 SM00849 Metallo-beta-lactamase superfamily AFR_15680 SM00382 ATPases associated with a variety of cellular activities AFR_15695 SM00346 helix_turn_helix isocitrate lyase regulation AFR_15715 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_15715 SM00895 AFR_15715 AFR_15735 SM00849 Metallo-beta-lactamase superfamily AFR_15750 SM00822 AFR_15750 AFR_15795 SM00656 AFR_15795 AFR_15820 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_15820 SM00458 Ricin-type beta-trefoil AFR_15830 SM00860 SMI1 / KNR4 family AFR_15875 SM00091 PAS domain AFR_15875 SM00387 Histidine kinase-like ATPases AFR_15880 SM00448 cheY-homologous receiver domain AFR_15885 SM00028 Tetratricopeptide repeats AFR_15970 SM00382 ATPases associated with a variety of cellular activities AFR_16015 SM00984 UDP binding domain AFR_16045 SM00829 Enoylreductase AFR_16095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_16115 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AFR_16120 SM00344 helix_turn_helix ASNC type AFR_16145 SM00421 helix_turn_helix, Lux Regulon AFR_16145 SM00448 cheY-homologous receiver domain AFR_16150 SM00387 Histidine kinase-like ATPases AFR_16180 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_16195 SM00108 Bulb-type mannose-specific lectin AFR_16200 SM00108 Bulb-type mannose-specific lectin AFR_16220 SM00382 ATPases associated with a variety of cellular activities AFR_16255 SM00421 helix_turn_helix, Lux Regulon AFR_16255 SM00448 cheY-homologous receiver domain AFR_16350 SM00849 Metallo-beta-lactamase superfamily AFR_16360 SM00822 AFR_16360 AFR_16365 SM00637 AFR_16365 AFR_16380 SM01120 AFR_16380 AFR_16410 SM00060 Fibronectin type 3 domain AFR_16445 SM00458 Ricin-type beta-trefoil AFR_16505 SM00984 UDP binding domain AFR_16570 SM01012 AFR_16570 AFR_16625 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_16625 SM01012 AFR_16625 AFR_16630 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_16630 SM01012 AFR_16630 AFR_16645 SM00382 ATPases associated with a variety of cellular activities AFR_16685 SM00020 Trypsin-like serine protease AFR_16710 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_16730 SM00382 ATPases associated with a variety of cellular activities AFR_16770 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_16785 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_16785 SM00387 Histidine kinase-like ATPases AFR_16790 SM00421 helix_turn_helix, Lux Regulon AFR_16790 SM00448 cheY-homologous receiver domain AFR_16795 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_16815 SM00354 helix_turn _helix lactose operon repressor AFR_16880 SM00248 ankyrin repeats AFR_16915 SM00344 helix_turn_helix ASNC type AFR_16925 SM00861 Transketolase, pyrimidine binding domain AFR_16960 SM00862 Transcriptional regulatory protein, C terminal AFR_16965 SM00612 AFR_16965 AFR_16970 SM00862 Transcriptional regulatory protein, C terminal AFR_16995 SM00052 Putative diguanylate phosphodiesterase AFR_16995 SM00267 diguanylate cyclase AFR_17060 SM00458 Ricin-type beta-trefoil AFR_17070 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_17085 SM00052 Putative diguanylate phosphodiesterase AFR_17085 SM00091 PAS domain AFR_17085 SM00267 diguanylate cyclase AFR_17105 SM00458 Ricin-type beta-trefoil AFR_17125 SM00530 Helix-turn-helix XRE-family like proteins AFR_17160 SM00382 ATPases associated with a variety of cellular activities AFR_17170 SM00822 AFR_17170 AFR_17185 SM00052 Putative diguanylate phosphodiesterase AFR_17185 SM00267 diguanylate cyclase AFR_17190 SM00387 Histidine kinase-like ATPases AFR_17190 SM00388 His Kinase A (phosphoacceptor) domain AFR_17190 SM01079 AFR_17190 AFR_17210 SM00530 Helix-turn-helix XRE-family like proteins AFR_17225 SM00448 cheY-homologous receiver domain AFR_17230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_17230 SM00331 Sigma factor PP2C-like phosphatases AFR_17295 SM00862 Transcriptional regulatory protein, C terminal AFR_17295 SM01043 Bacterial transcriptional activator domain AFR_17310 SM00342 helix_turn_helix, arabinose operon control protein AFR_17320 SM00382 ATPases associated with a variety of cellular activities AFR_17335 SM00448 cheY-homologous receiver domain AFR_17335 SM00862 Transcriptional regulatory protein, C terminal AFR_17340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_17340 SM00387 Histidine kinase-like ATPases AFR_17340 SM00388 His Kinase A (phosphoacceptor) domain AFR_17345 SM00052 Putative diguanylate phosphodiesterase AFR_17345 SM00267 diguanylate cyclase AFR_17370 SM00267 diguanylate cyclase AFR_17380 SM00052 Putative diguanylate phosphodiesterase AFR_17380 SM00267 diguanylate cyclase AFR_17450 SM00342 helix_turn_helix, arabinose operon control protein AFR_17480 SM00342 helix_turn_helix, arabinose operon control protein AFR_17525 SM00354 helix_turn _helix lactose operon repressor AFR_17530 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_17540 SM00458 Ricin-type beta-trefoil AFR_17560 SM00530 Helix-turn-helix XRE-family like proteins AFR_17575 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_17575 SM00895 AFR_17575 AFR_17600 SM00606 Cellulose Binding Domain Type IV AFR_17600 SM01217 AFR_17600 AFR_17645 SM00633 Glycosyl hydrolase family 10 AFR_17645 SM00637 AFR_17645 AFR_17650 SM00421 helix_turn_helix, Lux Regulon AFR_17650 SM00448 cheY-homologous receiver domain AFR_17675 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFR_17675 SM00475 5'-3' exonuclease AFR_17715 SM00633 Glycosyl hydrolase family 10 AFR_17715 SM00637 AFR_17715 AFR_17745 SM00448 cheY-homologous receiver domain AFR_17785 SM00530 Helix-turn-helix XRE-family like proteins AFR_17795 SM00062 Bacterial periplasmic substrate-binding proteins AFR_17800 SM00052 Putative diguanylate phosphodiesterase AFR_17800 SM00267 diguanylate cyclase AFR_17835 SM00327 von Willebrand factor (vWF) type A domain AFR_17875 SM00656 AFR_17875 AFR_17875 SM00710 Parallel beta-helix repeats AFR_17880 SM00637 AFR_17880 AFR_17900 SM00563 Phosphate acyltransferases AFR_17910 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_17910 SM00895 AFR_17910 AFR_17950 SM00530 Helix-turn-helix XRE-family like proteins AFR_17980 SM01217 AFR_17980 AFR_18000 SM00354 helix_turn _helix lactose operon repressor AFR_18005 SM00633 Glycosyl hydrolase family 10 AFR_18030 SM00633 Glycosyl hydrolase family 10 AFR_18030 SM00637 AFR_18030 AFR_18035 SM00637 AFR_18035 AFR_18040 SM00327 von Willebrand factor (vWF) type A domain AFR_18045 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_18045 SM00292 breast cancer carboxy-terminal domain AFR_18045 SM00532 Ligase N family AFR_18080 SM00382 ATPases associated with a variety of cellular activities AFR_18110 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_18135 SM00944 Pro-kumamolisin, activation domain AFR_18140 SM00052 Putative diguanylate phosphodiesterase AFR_18140 SM00267 diguanylate cyclase AFR_18185 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_18210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_18210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_18215 SM00382 ATPases associated with a variety of cellular activities AFR_18255 SM00267 diguanylate cyclase AFR_18280 SM00354 helix_turn _helix lactose operon repressor AFR_18305 SM00354 helix_turn _helix lactose operon repressor AFR_18325 SM00382 ATPases associated with a variety of cellular activities AFR_18330 SM00382 ATPases associated with a variety of cellular activities AFR_18345 SM00245 tail specific protease AFR_18380 SM00382 ATPases associated with a variety of cellular activities AFR_18400 SM00862 Transcriptional regulatory protein, C terminal AFR_18400 SM01043 Bacterial transcriptional activator domain AFR_18450 SM00382 ATPases associated with a variety of cellular activities AFR_18470 SM00382 ATPases associated with a variety of cellular activities AFR_18485 SM01209 AFR_18485 AFR_18535 SM00823 Phosphopantetheine attachment site AFR_18535 SM01294 AFR_18535 AFR_18540 SM00823 Phosphopantetheine attachment site AFR_18540 SM01294 AFR_18540 AFR_18545 SM00823 Phosphopantetheine attachment site AFR_18545 SM01294 AFR_18545 AFR_18550 SM00823 Phosphopantetheine attachment site AFR_18550 SM00824 Thioesterase AFR_18555 SM00923 MbtH-like protein AFR_18575 SM00421 helix_turn_helix, Lux Regulon AFR_18575 SM00448 cheY-homologous receiver domain AFR_18620 SM00267 diguanylate cyclase AFR_18665 SM00862 Transcriptional regulatory protein, C terminal AFR_18715 SM00020 Trypsin-like serine protease AFR_18725 SM00822 AFR_18725 AFR_18735 SM00342 helix_turn_helix, arabinose operon control protein AFR_18800 SM00382 ATPases associated with a variety of cellular activities AFR_18815 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_18830 SM00458 Ricin-type beta-trefoil AFR_18860 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_18910 SM00267 diguanylate cyclase AFR_18915 SM00637 AFR_18915 AFR_18920 SM00637 AFR_18920 AFR_18925 SM00637 AFR_18925 AFR_18930 SM00637 AFR_18930 AFR_18935 SM00354 helix_turn _helix lactose operon repressor AFR_18945 SM00382 ATPases associated with a variety of cellular activities AFR_19000 SM00833 Cobalamin synthesis protein cobW C-terminal domain AFR_19010 SM00382 ATPases associated with a variety of cellular activities AFR_19015 SM00368 Leucine rich repeat, ribonuclease inhibitor type AFR_19035 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_19040 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFR_19050 SM00903 Flavin reductase like domain AFR_19065 SM00248 ankyrin repeats AFR_19095 SM00342 helix_turn_helix, arabinose operon control protein AFR_19120 SM00052 Putative diguanylate phosphodiesterase AFR_19120 SM00267 diguanylate cyclase AFR_19140 SM00342 helix_turn_helix, arabinose operon control protein AFR_19165 SM00052 Putative diguanylate phosphodiesterase AFR_19165 SM00267 diguanylate cyclase AFR_19195 SM00873 B3/4 domain AFR_19205 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_19230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_19230 SM00387 Histidine kinase-like ATPases AFR_19230 SM00388 His Kinase A (phosphoacceptor) domain AFR_19235 SM00448 cheY-homologous receiver domain AFR_19235 SM00862 Transcriptional regulatory protein, C terminal AFR_19250 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_19250 SM00267 diguanylate cyclase AFR_19255 SM00346 helix_turn_helix isocitrate lyase regulation AFR_19270 SM00998 Adenylosuccinate lyase C-terminus AFR_19285 SM00882 Coenzyme A transferase AFR_19290 SM00882 Coenzyme A transferase AFR_19315 SM00382 ATPases associated with a variety of cellular activities AFR_19330 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_19355 SM00342 helix_turn_helix, arabinose operon control protein AFR_19380 SM00632 AFR_19380 AFR_19380 SM00642 Alpha-amylase domain AFR_19380 SM01065 Starch binding domain AFR_19385 SM00354 helix_turn _helix lactose operon repressor AFR_19405 SM00829 Enoylreductase AFR_19440 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_19470 SM00448 cheY-homologous receiver domain AFR_19470 SM00862 Transcriptional regulatory protein, C terminal AFR_19475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_19475 SM00387 Histidine kinase-like ATPases AFR_19475 SM00388 His Kinase A (phosphoacceptor) domain AFR_19495 SM01001 AIR carboxylase AFR_19505 SM00354 helix_turn _helix lactose operon repressor AFR_19525 SM00382 ATPases associated with a variety of cellular activities AFR_19575 SM00637 AFR_19575 AFR_19580 SM00637 AFR_19580 AFR_19670 SM00052 Putative diguanylate phosphodiesterase AFR_19690 SM00341 Helicase and RNase D C-terminal AFR_19690 SM00487 DEAD-like helicases superfamily AFR_19690 SM00490 helicase superfamily c-terminal domain AFR_19690 SM00956 AFR_19690 AFR_19710 SM00331 Sigma factor PP2C-like phosphatases AFR_19785 SM00422 helix_turn_helix, mercury resistance AFR_19800 SM01022 AFR_19800 AFR_19820 SM00387 Histidine kinase-like ATPases AFR_19830 SM00829 Enoylreductase AFR_19840 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_19910 SM00382 ATPases associated with a variety of cellular activities AFR_19920 SM00387 Histidine kinase-like ATPases AFR_19925 SM00421 helix_turn_helix, Lux Regulon AFR_19925 SM00448 cheY-homologous receiver domain AFR_19950 SM00448 cheY-homologous receiver domain AFR_19955 SM00091 PAS domain AFR_19955 SM00387 Histidine kinase-like ATPases AFR_19970 SM00354 helix_turn _helix lactose operon repressor AFR_19995 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_20005 SM00422 helix_turn_helix, mercury resistance AFR_20050 SM00382 ATPases associated with a variety of cellular activities AFR_20095 SM00530 Helix-turn-helix XRE-family like proteins AFR_20105 SM00052 Putative diguanylate phosphodiesterase AFR_20105 SM00267 diguanylate cyclase AFR_20130 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_20135 SM00382 ATPases associated with a variety of cellular activities AFR_20170 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_20180 SM00091 PAS domain AFR_20180 SM00267 diguanylate cyclase AFR_20200 SM00382 ATPases associated with a variety of cellular activities AFR_20205 SM00028 Tetratricopeptide repeats AFR_20215 SM00460 Transglutaminase/protease-like homologues AFR_20250 SM00866 AFR_20250 AFR_20280 SM00421 helix_turn_helix, Lux Regulon AFR_20280 SM00448 cheY-homologous receiver domain AFR_20305 SM00382 ATPases associated with a variety of cellular activities AFR_20315 SM00448 cheY-homologous receiver domain AFR_20315 SM00862 Transcriptional regulatory protein, C terminal AFR_20320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_20320 SM00387 Histidine kinase-like ATPases AFR_20320 SM00388 His Kinase A (phosphoacceptor) domain AFR_20355 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_20375 SM00421 helix_turn_helix, Lux Regulon AFR_20375 SM00448 cheY-homologous receiver domain AFR_20405 SM00052 Putative diguanylate phosphodiesterase AFR_20405 SM00267 diguanylate cyclase AFR_20410 SM01060 AFR_20410 AFR_20425 SM00382 ATPases associated with a variety of cellular activities AFR_20425 SM00930 AFR_20425 AFR_20440 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_20460 SM00495 Chitin-binding domain type 3 AFR_20460 SM00636 AFR_20460 AFR_20480 SM00855 Phosphoglycerate mutase family AFR_20490 SM00822 AFR_20490 AFR_20500 SM00419 helix_turn_helix, cAMP Regulatory protein AFR_20510 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_20525 SM00382 ATPases associated with a variety of cellular activities AFR_20535 SM00354 helix_turn _helix lactose operon repressor AFR_20540 SM00354 helix_turn _helix lactose operon repressor AFR_20565 SM00448 cheY-homologous receiver domain AFR_20565 SM00862 Transcriptional regulatory protein, C terminal AFR_20570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_20570 SM00387 Histidine kinase-like ATPases AFR_20570 SM00388 His Kinase A (phosphoacceptor) domain AFR_20580 SM00382 ATPases associated with a variety of cellular activities AFR_20600 SM00421 helix_turn_helix, Lux Regulon AFR_20680 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_20680 SM00866 AFR_20680 AFR_20725 SM00382 ATPases associated with a variety of cellular activities AFR_20750 SM00354 helix_turn _helix lactose operon repressor AFR_20770 SM00354 helix_turn _helix lactose operon repressor AFR_20835 SM01110 AFR_20835 AFR_20840 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_20840 SM00419 helix_turn_helix, cAMP Regulatory protein AFR_20850 SM00052 Putative diguanylate phosphodiesterase AFR_20850 SM00091 PAS domain AFR_20850 SM00267 diguanylate cyclase AFR_20900 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_20905 SM00421 helix_turn_helix, Lux Regulon AFR_20905 SM00448 cheY-homologous receiver domain AFR_20915 SM00382 ATPases associated with a variety of cellular activities AFR_20950 SM00382 ATPases associated with a variety of cellular activities AFR_21000 SM00342 helix_turn_helix, arabinose operon control protein AFR_21040 SM00382 ATPases associated with a variety of cellular activities AFR_21055 SM00327 von Willebrand factor (vWF) type A domain AFR_21085 SM00240 Forkhead associated domain AFR_21090 SM00422 helix_turn_helix, mercury resistance AFR_21100 SM00422 helix_turn_helix, mercury resistance AFR_21115 SM00331 Sigma factor PP2C-like phosphatases AFR_21140 SM00530 Helix-turn-helix XRE-family like proteins AFR_21155 SM00448 cheY-homologous receiver domain AFR_21155 SM00862 Transcriptional regulatory protein, C terminal AFR_21160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_21160 SM00387 Histidine kinase-like ATPases AFR_21160 SM00388 His Kinase A (phosphoacceptor) domain AFR_21165 SM00487 DEAD-like helicases superfamily AFR_21165 SM00490 helicase superfamily c-terminal domain AFR_21265 SM00382 ATPases associated with a variety of cellular activities AFR_21280 SM00421 helix_turn_helix, Lux Regulon AFR_21280 SM00448 cheY-homologous receiver domain AFR_21300 SM00382 ATPases associated with a variety of cellular activities AFR_21355 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_21385 SM00382 ATPases associated with a variety of cellular activities AFR_21385 SM00421 helix_turn_helix, Lux Regulon AFR_21415 SM00563 Phosphate acyltransferases AFR_21435 SM00028 Tetratricopeptide repeats AFR_21440 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_21465 SM00342 helix_turn_helix, arabinose operon control protein AFR_21490 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_21510 SM00889 Elongation factor G, domain IV AFR_21560 SM00421 helix_turn_helix, Lux Regulon AFR_21560 SM00448 cheY-homologous receiver domain AFR_21580 SM00421 helix_turn_helix, Lux Regulon AFR_21580 SM00448 cheY-homologous receiver domain AFR_21610 SM00422 helix_turn_helix, mercury resistance AFR_21635 SM01130 AFR_21635 AFR_21645 SM00052 Putative diguanylate phosphodiesterase AFR_21645 SM00267 diguanylate cyclase AFR_21650 SM00897 FIST N domain AFR_21650 SM01204 AFR_21650 AFR_21665 SM00354 helix_turn _helix lactose operon repressor AFR_21695 SM00421 helix_turn_helix, Lux Regulon AFR_21695 SM00448 cheY-homologous receiver domain AFR_21765 SM00073 Histidine Phosphotransfer domain AFR_21765 SM00091 PAS domain AFR_21765 SM00387 Histidine kinase-like ATPases AFR_21765 SM00388 His Kinase A (phosphoacceptor) domain AFR_21765 SM00448 cheY-homologous receiver domain AFR_21845 SM00448 cheY-homologous receiver domain AFR_21845 SM00862 Transcriptional regulatory protein, C terminal AFR_21855 SM00344 helix_turn_helix ASNC type AFR_21865 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AFR_21865 SM00475 5'-3' exonuclease AFR_21870 SM00052 Putative diguanylate phosphodiesterase AFR_21870 SM00091 PAS domain AFR_21870 SM00267 diguanylate cyclase AFR_21895 SM00091 PAS domain AFR_21895 SM00267 diguanylate cyclase AFR_21925 SM00421 helix_turn_helix, Lux Regulon AFR_21925 SM00448 cheY-homologous receiver domain AFR_21935 SM00382 ATPases associated with a variety of cellular activities AFR_21975 SM00327 von Willebrand factor (vWF) type A domain AFR_21975 SM00609 Vault protein Inter-alpha-Trypsin domain AFR_21985 SM00458 Ricin-type beta-trefoil AFR_22020 SM00421 helix_turn_helix, Lux Regulon AFR_22020 SM00448 cheY-homologous receiver domain AFR_22025 SM00387 Histidine kinase-like ATPases AFR_22065 SM00382 ATPases associated with a variety of cellular activities AFR_22080 SM00530 Helix-turn-helix XRE-family like proteins AFR_22100 SM00458 Ricin-type beta-trefoil AFR_22150 SM00563 Phosphate acyltransferases AFR_22175 SM00421 helix_turn_helix, Lux Regulon AFR_22175 SM00448 cheY-homologous receiver domain AFR_22190 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_22190 SM00387 Histidine kinase-like ATPases AFR_22215 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_22245 SM00450 Rhodanese Homology Domain AFR_22255 SM00382 ATPases associated with a variety of cellular activities AFR_22260 SM00062 Bacterial periplasmic substrate-binding proteins AFR_22305 SM00062 Bacterial periplasmic substrate-binding proteins AFR_22315 SM00382 ATPases associated with a variety of cellular activities AFR_22360 SM00382 ATPases associated with a variety of cellular activities AFR_22385 SM00382 ATPases associated with a variety of cellular activities AFR_22415 SM01130 AFR_22415 AFR_22460 SM00354 helix_turn _helix lactose operon repressor AFR_22470 SM00637 AFR_22470 AFR_22525 SM00530 Helix-turn-helix XRE-family like proteins AFR_22555 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_22555 SM01134 AFR_22555 AFR_22615 SM00382 ATPases associated with a variety of cellular activities AFR_22620 SM00422 helix_turn_helix, mercury resistance AFR_22630 SM00382 ATPases associated with a variety of cellular activities AFR_22675 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_22715 SM00710 Parallel beta-helix repeats AFR_22720 SM00710 Parallel beta-helix repeats AFR_22725 SM00984 UDP binding domain AFR_22735 SM01192 AFR_22735 AFR_22735 SM01193 AFR_22735 AFR_22740 SM00422 helix_turn_helix, mercury resistance AFR_22745 SM00852 Probable molybdopterin binding domain AFR_22765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_22765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_22770 SM00052 Putative diguanylate phosphodiesterase AFR_22770 SM00267 diguanylate cyclase AFR_22785 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_22810 SM00448 cheY-homologous receiver domain AFR_22810 SM00862 Transcriptional regulatory protein, C terminal AFR_22870 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_22885 SM00530 Helix-turn-helix XRE-family like proteins AFR_22910 SM00530 Helix-turn-helix XRE-family like proteins AFR_22945 SM00829 Enoylreductase AFR_22950 SM00530 Helix-turn-helix XRE-family like proteins AFR_22960 SM00060 Fibronectin type 3 domain AFR_23040 SM00822 AFR_23040 AFR_23050 SM00421 helix_turn_helix, Lux Regulon AFR_23120 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_23150 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_23180 SM00530 Helix-turn-helix XRE-family like proteins AFR_23215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_23215 SM00421 helix_turn_helix, Lux Regulon AFR_23230 SM01120 AFR_23230 AFR_23245 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_23265 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AFR_23280 SM00849 Metallo-beta-lactamase superfamily AFR_23285 SM00155 Phospholipase D. Active site motifs. AFR_23395 SM01060 AFR_23395 AFR_23400 SM00458 Ricin-type beta-trefoil AFR_23465 SM00448 cheY-homologous receiver domain AFR_23465 SM00862 Transcriptional regulatory protein, C terminal AFR_23470 SM00387 Histidine kinase-like ATPases AFR_23470 SM00388 His Kinase A (phosphoacceptor) domain AFR_23520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_23530 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_23600 SM00421 helix_turn_helix, Lux Regulon AFR_23630 SM00382 ATPases associated with a variety of cellular activities AFR_23640 SM00382 ATPases associated with a variety of cellular activities AFR_23665 SM00923 MbtH-like protein AFR_23670 SM00823 Phosphopantetheine attachment site AFR_23675 SM00823 Phosphopantetheine attachment site AFR_23680 SM00823 Phosphopantetheine attachment site AFR_23695 SM00346 helix_turn_helix isocitrate lyase regulation AFR_23750 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFR_23760 SM00346 helix_turn_helix isocitrate lyase regulation AFR_23835 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_23860 SM00822 AFR_23860 AFR_23930 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_23995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_23995 SM00387 Histidine kinase-like ATPases AFR_23995 SM00388 His Kinase A (phosphoacceptor) domain AFR_24000 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_24000 SM00387 Histidine kinase-like ATPases AFR_24000 SM00388 His Kinase A (phosphoacceptor) domain AFR_24035 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_24045 SM00530 Helix-turn-helix XRE-family like proteins AFR_24055 SM00382 ATPases associated with a variety of cellular activities AFR_24060 SM00448 cheY-homologous receiver domain AFR_24060 SM00862 Transcriptional regulatory protein, C terminal AFR_24065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_24065 SM00387 Histidine kinase-like ATPases AFR_24070 SM00606 Cellulose Binding Domain Type IV AFR_24100 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_24100 SM01134 AFR_24100 AFR_24115 SM00387 Histidine kinase-like ATPases AFR_24115 SM00388 His Kinase A (phosphoacceptor) domain AFR_24115 SM01079 AFR_24115 AFR_24175 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_24175 SM00091 PAS domain AFR_24175 SM00387 Histidine kinase-like ATPases AFR_24175 SM00388 His Kinase A (phosphoacceptor) domain AFR_24175 SM00448 cheY-homologous receiver domain AFR_24190 SM00642 Alpha-amylase domain AFR_24195 SM00421 helix_turn_helix, Lux Regulon AFR_24195 SM00448 cheY-homologous receiver domain AFR_24205 SM00382 ATPases associated with a variety of cellular activities AFR_24215 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_24230 SM00382 ATPases associated with a variety of cellular activities AFR_24290 SM00331 Sigma factor PP2C-like phosphatases AFR_24370 SM00829 Enoylreductase AFR_24385 SM00382 ATPases associated with a variety of cellular activities AFR_24400 SM00448 cheY-homologous receiver domain AFR_24400 SM00862 Transcriptional regulatory protein, C terminal AFR_24405 SM00387 Histidine kinase-like ATPases AFR_24405 SM00388 His Kinase A (phosphoacceptor) domain AFR_24415 SM00382 ATPases associated with a variety of cellular activities AFR_24420 SM00062 Bacterial periplasmic substrate-binding proteins AFR_24430 SM00248 ankyrin repeats AFR_24465 SM00947 Carbonic anhydrase AFR_24495 SM00422 helix_turn_helix, mercury resistance AFR_24510 SM00354 helix_turn _helix lactose operon repressor AFR_24520 SM00052 Putative diguanylate phosphodiesterase AFR_24520 SM00091 PAS domain AFR_24520 SM00267 diguanylate cyclase AFR_24525 SM00889 Elongation factor G, domain IV AFR_24580 SM00487 DEAD-like helicases superfamily AFR_24580 SM00490 helicase superfamily c-terminal domain AFR_24600 SM00421 helix_turn_helix, Lux Regulon AFR_24600 SM00448 cheY-homologous receiver domain AFR_24665 SM00642 Alpha-amylase domain AFR_24680 SM00382 ATPases associated with a variety of cellular activities AFR_24690 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_24740 SM00637 AFR_24740 AFR_24760 SM00560 LamG-like jellyroll fold domain AFR_24760 SM00776 AFR_24760 AFR_24760 SM01038 Beta galactosidase small chain AFR_24785 SM00331 Sigma factor PP2C-like phosphatases AFR_24785 SM01012 AFR_24785 AFR_24790 SM00460 Transglutaminase/protease-like homologues AFR_24815 SM00267 diguanylate cyclase AFR_24820 SM01350 AFR_24820 AFR_24825 SM00052 Putative diguanylate phosphodiesterase AFR_24825 SM00267 diguanylate cyclase AFR_24835 SM00421 helix_turn_helix, Lux Regulon AFR_24835 SM00448 cheY-homologous receiver domain AFR_24910 SM00487 DEAD-like helicases superfamily AFR_24910 SM00490 helicase superfamily c-terminal domain AFR_24935 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_24975 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_25060 SM00382 ATPases associated with a variety of cellular activities AFR_25070 SM00849 Metallo-beta-lactamase superfamily AFR_25090 SM00354 helix_turn _helix lactose operon repressor AFR_25105 SM00421 helix_turn_helix, Lux Regulon AFR_25145 SM00060 Fibronectin type 3 domain AFR_25200 SM00813 Alpha-L-arabinofuranosidase C-terminus AFR_25260 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_25275 SM00354 helix_turn _helix lactose operon repressor AFR_25310 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_25345 SM00342 helix_turn_helix, arabinose operon control protein AFR_25350 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_25380 SM00458 Ricin-type beta-trefoil AFR_25465 SM00382 ATPases associated with a variety of cellular activities AFR_25485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_25485 SM00387 Histidine kinase-like ATPases AFR_25485 SM00388 His Kinase A (phosphoacceptor) domain AFR_25495 SM00448 cheY-homologous receiver domain AFR_25495 SM00862 Transcriptional regulatory protein, C terminal AFR_25530 SM00382 ATPases associated with a variety of cellular activities AFR_25545 SM01007 Class II Aldolase and Adducin N-terminal domain AFR_25555 SM00354 helix_turn _helix lactose operon repressor AFR_25595 SM00267 diguanylate cyclase AFR_25610 SM00382 ATPases associated with a variety of cellular activities AFR_25645 SM00421 helix_turn_helix, Lux Regulon AFR_25645 SM00448 cheY-homologous receiver domain AFR_25650 SM00387 Histidine kinase-like ATPases AFR_25660 SM00382 ATPases associated with a variety of cellular activities AFR_25665 SM00260 Two component signalling adaptor domain AFR_25670 SM00138 Methyltransferase, chemotaxis proteins AFR_25680 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_25685 SM00073 Histidine Phosphotransfer domain AFR_25685 SM00260 Two component signalling adaptor domain AFR_25685 SM00387 Histidine kinase-like ATPases AFR_25685 SM00448 cheY-homologous receiver domain AFR_25690 SM00448 cheY-homologous receiver domain AFR_25695 SM00387 Histidine kinase-like ATPases AFR_25695 SM00388 His Kinase A (phosphoacceptor) domain AFR_25695 SM00448 cheY-homologous receiver domain AFR_25700 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AFR_25725 SM00382 ATPases associated with a variety of cellular activities AFR_25735 SM00421 helix_turn_helix, Lux Regulon AFR_25735 SM00448 cheY-homologous receiver domain AFR_25755 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_25765 SM00495 Chitin-binding domain type 3 AFR_25770 SM00052 Putative diguanylate phosphodiesterase AFR_25770 SM00091 PAS domain AFR_25770 SM00267 diguanylate cyclase AFR_25775 SM00052 Putative diguanylate phosphodiesterase AFR_25785 SM00530 Helix-turn-helix XRE-family like proteins AFR_25880 SM00829 Enoylreductase AFR_25895 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_25915 SM00052 Putative diguanylate phosphodiesterase AFR_25915 SM00267 diguanylate cyclase AFR_25920 SM00052 Putative diguanylate phosphodiesterase AFR_25920 SM00267 diguanylate cyclase AFR_25925 SM00255 Toll - interleukin 1 - resistance AFR_25935 SM00028 Tetratricopeptide repeats AFR_25940 SM00382 ATPases associated with a variety of cellular activities AFR_25950 SM00028 Tetratricopeptide repeats AFR_25950 SM00530 Helix-turn-helix XRE-family like proteins AFR_25950 SM00862 Transcriptional regulatory protein, C terminal AFR_25950 SM01043 Bacterial transcriptional activator domain AFR_25975 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_26005 SM00637 AFR_26005 AFR_26010 SM00637 AFR_26010 AFR_26015 SM00421 helix_turn_helix, Lux Regulon AFR_26015 SM00448 cheY-homologous receiver domain AFR_26070 SM00327 von Willebrand factor (vWF) type A domain AFR_26115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_26135 SM00346 helix_turn_helix isocitrate lyase regulation AFR_26165 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_26165 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_26165 SM00606 Cellulose Binding Domain Type IV AFR_26170 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_26195 SM00421 helix_turn_helix, Lux Regulon AFR_26195 SM00448 cheY-homologous receiver domain AFR_26205 SM00382 ATPases associated with a variety of cellular activities AFR_26225 SM00062 Bacterial periplasmic substrate-binding proteins AFR_26240 SM00331 Sigma factor PP2C-like phosphatases AFR_26240 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_26245 SM00327 von Willebrand factor (vWF) type A domain AFR_26250 SM00240 Forkhead associated domain AFR_26285 SM00656 AFR_26285 AFR_26295 SM00342 helix_turn_helix, arabinose operon control protein AFR_26310 SM00354 helix_turn _helix lactose operon repressor AFR_26320 SM00487 DEAD-like helicases superfamily AFR_26320 SM00490 helicase superfamily c-terminal domain AFR_26320 SM01142 AFR_26320 AFR_26335 SM00046 Diacylglycerol kinase catalytic domain (presumed) AFR_26380 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_26420 SM00382 ATPases associated with a variety of cellular activities AFR_26450 SM00421 helix_turn_helix, Lux Regulon AFR_26450 SM00448 cheY-homologous receiver domain AFR_26465 SM00382 ATPases associated with a variety of cellular activities AFR_26505 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_26555 SM00387 Histidine kinase-like ATPases AFR_26560 SM00421 helix_turn_helix, Lux Regulon AFR_26560 SM00448 cheY-homologous receiver domain AFR_26565 SM01018 B12 binding domain AFR_26580 SM00530 Helix-turn-helix XRE-family like proteins AFR_26595 SM00382 ATPases associated with a variety of cellular activities AFR_26600 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_26615 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_26615 SM00866 AFR_26615 AFR_26620 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_26645 SM00855 Phosphoglycerate mutase family AFR_26695 SM00382 ATPases associated with a variety of cellular activities AFR_26695 SM01086 C-terminal, D2-small domain, of ClpB protein AFR_26720 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AFR_26755 SM00862 Transcriptional regulatory protein, C terminal AFR_26765 SM00248 ankyrin repeats AFR_26775 SM00957 SecA DEAD-like domain AFR_26775 SM00958 SecA preprotein cross-linking domain AFR_26780 SM00382 ATPases associated with a variety of cellular activities AFR_26795 SM00091 PAS domain AFR_26795 SM00138 Methyltransferase, chemotaxis proteins AFR_26820 SM00704 CDGSH-type zinc finger. Function unknown. AFR_26825 SM01236 AFR_26825 AFR_26875 SM00421 helix_turn_helix, Lux Regulon AFR_26875 SM00448 cheY-homologous receiver domain AFR_26880 SM00387 Histidine kinase-like ATPases AFR_26885 SM00530 Helix-turn-helix XRE-family like proteins AFR_26925 SM00327 von Willebrand factor (vWF) type A domain AFR_26950 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_26970 SM00052 Putative diguanylate phosphodiesterase AFR_26970 SM00267 diguanylate cyclase AFR_26980 SM00331 Sigma factor PP2C-like phosphatases AFR_27010 SM00052 Putative diguanylate phosphodiesterase AFR_27010 SM00267 diguanylate cyclase AFR_27015 SM00382 ATPases associated with a variety of cellular activities AFR_27015 SM00487 DEAD-like helicases superfamily AFR_27015 SM00490 helicase superfamily c-terminal domain AFR_27015 SM00847 Helicase associated domain (HA2) Add an annotation AFR_27025 SM00448 cheY-homologous receiver domain AFR_27030 SM00387 Histidine kinase-like ATPases AFR_27030 SM00388 His Kinase A (phosphoacceptor) domain AFR_27030 SM01079 AFR_27030 AFR_27035 SM00047 Lysozyme subfamily 2 AFR_27035 SM00287 Bacterial SH3 domain homologues AFR_27040 SM00014 Acid phosphatase homologues AFR_27055 SM00052 Putative diguanylate phosphodiesterase AFR_27055 SM00267 diguanylate cyclase AFR_27095 SM00642 Alpha-amylase domain AFR_27100 SM00642 Alpha-amylase domain AFR_27110 SM00642 Alpha-amylase domain AFR_27145 SM00331 Sigma factor PP2C-like phosphatases AFR_27145 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_27150 SM00421 helix_turn_helix, Lux Regulon AFR_27155 SM00829 Enoylreductase AFR_27160 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_27160 SM00732 Likely ribonuclease with RNase H fold. AFR_27165 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_27175 SM00327 von Willebrand factor (vWF) type A domain AFR_27185 SM00382 ATPases associated with a variety of cellular activities AFR_27200 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_27210 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFR_27215 SM00421 helix_turn_helix, Lux Regulon AFR_27215 SM00448 cheY-homologous receiver domain AFR_27230 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_27245 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AFR_27280 SM00331 Sigma factor PP2C-like phosphatases AFR_27280 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_27285 SM00060 Fibronectin type 3 domain AFR_27300 SM00637 AFR_27300 AFR_27330 SM00560 LamG-like jellyroll fold domain AFR_27345 SM00984 UDP binding domain AFR_27350 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_27350 SM00267 diguanylate cyclase AFR_27355 SM00354 helix_turn _helix lactose operon repressor AFR_27415 SM00342 helix_turn_helix, arabinose operon control protein AFR_27440 SM00421 helix_turn_helix, Lux Regulon AFR_27450 SM00346 helix_turn_helix isocitrate lyase regulation AFR_27480 SM00060 Fibronectin type 3 domain AFR_27545 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_27575 SM00382 ATPases associated with a variety of cellular activities AFR_27600 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_27610 SM00052 Putative diguanylate phosphodiesterase AFR_27610 SM00267 diguanylate cyclase AFR_27640 SM00382 ATPases associated with a variety of cellular activities AFR_27655 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_27660 SM00382 ATPases associated with a variety of cellular activities AFR_27665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_27665 SM00387 Histidine kinase-like ATPases AFR_27665 SM00388 His Kinase A (phosphoacceptor) domain AFR_27670 SM00448 cheY-homologous receiver domain AFR_27670 SM00862 Transcriptional regulatory protein, C terminal AFR_27685 SM00382 ATPases associated with a variety of cellular activities AFR_27710 SM00020 Trypsin-like serine protease AFR_27715 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_27730 SM00642 Alpha-amylase domain AFR_27735 SM00642 Alpha-amylase domain AFR_27795 SM00344 helix_turn_helix ASNC type AFR_27820 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_27820 SM00458 Ricin-type beta-trefoil AFR_27830 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_27930 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_27975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFR_27980 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_27980 SM01012 AFR_27980 AFR_27985 SM01012 AFR_27985 AFR_28010 SM00282 Laminin G domain AFR_28035 SM00052 Putative diguanylate phosphodiesterase AFR_28035 SM00091 PAS domain AFR_28035 SM00267 diguanylate cyclase AFR_28110 SM00631 AFR_28110 AFR_28120 SM00387 Histidine kinase-like ATPases AFR_28125 SM00960 Roadblock/LC7 domain AFR_28145 SM00267 diguanylate cyclase AFR_28190 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_28195 SM00460 Transglutaminase/protease-like homologues AFR_28210 SM00060 Fibronectin type 3 domain AFR_28215 SM00387 Histidine kinase-like ATPases AFR_28215 SM00388 His Kinase A (phosphoacceptor) domain AFR_28220 SM00448 cheY-homologous receiver domain AFR_28220 SM00862 Transcriptional regulatory protein, C terminal AFR_28225 SM00862 Transcriptional regulatory protein, C terminal AFR_28225 SM01043 Bacterial transcriptional activator domain AFR_28230 SM00421 helix_turn_helix, Lux Regulon AFR_28235 SM00448 cheY-homologous receiver domain AFR_28235 SM00862 Transcriptional regulatory protein, C terminal AFR_28260 SM00060 Fibronectin type 3 domain AFR_28260 SM00637 AFR_28260 AFR_28315 SM00052 Putative diguanylate phosphodiesterase AFR_28340 SM00421 helix_turn_helix, Lux Regulon AFR_28390 SM00878 Biotin carboxylase C-terminal domain AFR_28415 SM00849 Metallo-beta-lactamase superfamily AFR_28445 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_28450 SM00606 Cellulose Binding Domain Type IV AFR_28480 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_28480 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_28480 SM00267 diguanylate cyclase AFR_28485 SM00458 Ricin-type beta-trefoil AFR_28490 SM00060 Fibronectin type 3 domain AFR_28490 SM00458 Ricin-type beta-trefoil AFR_28500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_28500 SM00387 Histidine kinase-like ATPases AFR_28500 SM00388 His Kinase A (phosphoacceptor) domain AFR_28505 SM00448 cheY-homologous receiver domain AFR_28505 SM00862 Transcriptional regulatory protein, C terminal AFR_28510 SM00020 Trypsin-like serine protease AFR_28515 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_28540 SM00829 Enoylreductase AFR_28550 SM00342 helix_turn_helix, arabinose operon control protein AFR_28585 SM00331 Sigma factor PP2C-like phosphatases AFR_28600 SM00382 ATPases associated with a variety of cellular activities AFR_28610 SM00448 cheY-homologous receiver domain AFR_28610 SM00862 Transcriptional regulatory protein, C terminal AFR_28615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_28615 SM00387 Histidine kinase-like ATPases AFR_28615 SM00388 His Kinase A (phosphoacceptor) domain AFR_28620 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_28620 SM00387 Histidine kinase-like ATPases AFR_28620 SM00388 His Kinase A (phosphoacceptor) domain AFR_28625 SM00448 cheY-homologous receiver domain AFR_28625 SM00862 Transcriptional regulatory protein, C terminal AFR_28675 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_28675 SM00895 AFR_28675 AFR_28705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_28705 SM00091 PAS domain AFR_28705 SM00387 Histidine kinase-like ATPases AFR_28705 SM00388 His Kinase A (phosphoacceptor) domain AFR_28705 SM00448 cheY-homologous receiver domain AFR_28715 SM00822 AFR_28715 AFR_28720 SM00530 Helix-turn-helix XRE-family like proteins AFR_28770 SM00421 helix_turn_helix, Lux Regulon AFR_28770 SM00448 cheY-homologous receiver domain AFR_28780 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_28800 SM00421 helix_turn_helix, Lux Regulon AFR_28815 SM00382 ATPases associated with a variety of cellular activities AFR_28825 SM00387 Histidine kinase-like ATPases AFR_28830 SM00421 helix_turn_helix, Lux Regulon AFR_28830 SM00448 cheY-homologous receiver domain AFR_28835 SM00422 helix_turn_helix, mercury resistance AFR_28850 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_28870 SM00382 ATPases associated with a variety of cellular activities AFR_28880 SM00829 Enoylreductase AFR_28895 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_28900 SM00422 helix_turn_helix, mercury resistance AFR_28905 SM00822 AFR_28905 AFR_28920 SM00421 helix_turn_helix, Lux Regulon AFR_28950 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_28955 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_28955 SM00387 Histidine kinase-like ATPases AFR_28960 SM00421 helix_turn_helix, Lux Regulon AFR_28960 SM00448 cheY-homologous receiver domain AFR_28965 SM00448 cheY-homologous receiver domain AFR_29015 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_29045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_29045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_29065 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_29070 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_29075 SM00606 Cellulose Binding Domain Type IV AFR_29085 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_29085 SM00895 AFR_29085 AFR_29105 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AFR_29125 SM00829 Enoylreductase AFR_29145 SM00829 Enoylreductase AFR_29155 SM00342 helix_turn_helix, arabinose operon control protein AFR_29160 SM00458 Ricin-type beta-trefoil AFR_29165 SM00458 Ricin-type beta-trefoil AFR_29170 SM00458 Ricin-type beta-trefoil AFR_29175 SM00458 Ricin-type beta-trefoil AFR_29180 SM00458 Ricin-type beta-trefoil AFR_29180 SM00710 Parallel beta-helix repeats AFR_29185 SM00606 Cellulose Binding Domain Type IV AFR_29190 SM00458 Ricin-type beta-trefoil AFR_29195 SM00458 Ricin-type beta-trefoil AFR_29200 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_29200 SM00458 Ricin-type beta-trefoil AFR_29200 SM00606 Cellulose Binding Domain Type IV AFR_29205 SM00458 Ricin-type beta-trefoil AFR_29210 SM00458 Ricin-type beta-trefoil AFR_29220 SM00382 ATPases associated with a variety of cellular activities AFR_29230 SM00923 MbtH-like protein AFR_29235 SM00823 Phosphopantetheine attachment site AFR_29240 SM00849 Metallo-beta-lactamase superfamily AFR_29280 SM00919 Malic enzyme, NAD binding domain AFR_29280 SM01274 AFR_29280 AFR_29320 SM00342 helix_turn_helix, arabinose operon control protein AFR_29410 SM00382 ATPases associated with a variety of cellular activities AFR_29420 SM00448 cheY-homologous receiver domain AFR_29420 SM00862 Transcriptional regulatory protein, C terminal AFR_29425 SM00387 Histidine kinase-like ATPases AFR_29425 SM00388 His Kinase A (phosphoacceptor) domain AFR_29450 SM00862 Transcriptional regulatory protein, C terminal AFR_29450 SM01043 Bacterial transcriptional activator domain AFR_29465 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_29475 SM00822 AFR_29475 AFR_29490 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_29525 SM00382 ATPases associated with a variety of cellular activities AFR_29575 SM00487 DEAD-like helicases superfamily AFR_29575 SM00490 helicase superfamily c-terminal domain AFR_29615 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_29620 SM00382 ATPases associated with a variety of cellular activities AFR_29630 SM00363 S4 RNA-binding domain AFR_29680 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_29700 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_29740 SM00829 Enoylreductase AFR_29745 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_29770 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_29780 SM00478 endonuclease III AFR_29880 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AFR_29880 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AFR_29945 SM00363 S4 RNA-binding domain AFR_29965 SM00382 ATPases associated with a variety of cellular activities AFR_29980 SM00421 helix_turn_helix, Lux Regulon AFR_29980 SM00448 cheY-homologous receiver domain AFR_30050 SM00740 AFR_30050 AFR_30070 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_30085 SM00855 Phosphoglycerate mutase family AFR_30110 SM00813 Alpha-L-arabinofuranosidase C-terminus AFR_30120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_30125 SM00421 helix_turn_helix, Lux Regulon AFR_30125 SM00448 cheY-homologous receiver domain AFR_30245 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFR_30270 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_30280 SM00530 Helix-turn-helix XRE-family like proteins AFR_30305 SM00382 ATPases associated with a variety of cellular activities AFR_30315 SM00421 helix_turn_helix, Lux Regulon AFR_30315 SM00448 cheY-homologous receiver domain AFR_30325 SM01217 AFR_30325 AFR_30355 SM00382 ATPases associated with a variety of cellular activities AFR_30365 SM00387 Histidine kinase-like ATPases AFR_30370 SM00421 helix_turn_helix, Lux Regulon AFR_30370 SM00448 cheY-homologous receiver domain AFR_30385 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_30390 SM00382 ATPases associated with a variety of cellular activities AFR_30430 SM00822 AFR_30430 AFR_30440 SM00873 B3/4 domain AFR_30440 SM00874 tRNA synthetase B5 domain AFR_30440 SM00896 Ferredoxin-fold anticodon binding domain AFR_30450 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFR_30485 SM00062 Bacterial periplasmic substrate-binding proteins AFR_30485 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AFR_30495 SM00382 ATPases associated with a variety of cellular activities AFR_30525 SM00267 diguanylate cyclase AFR_30525 SM00448 cheY-homologous receiver domain AFR_30585 SM01409 AFR_30585 AFR_30590 SM00072 Guanylate kinase homologues. AFR_30600 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AFR_30615 SM00851 MGS-like domain AFR_30615 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AFR_30620 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AFR_30640 SM00530 Helix-turn-helix XRE-family like proteins AFR_30650 SM00841 Elongation factor P, C-terminal AFR_30650 SM01185 AFR_30650 AFR_30705 SM00732 Likely ribonuclease with RNase H fold. AFR_30710 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFR_30740 SM00382 ATPases associated with a variety of cellular activities AFR_30755 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_30775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_30775 SM00387 Histidine kinase-like ATPases AFR_30775 SM00388 His Kinase A (phosphoacceptor) domain AFR_30780 SM00448 cheY-homologous receiver domain AFR_30780 SM00862 Transcriptional regulatory protein, C terminal AFR_30785 SM00382 ATPases associated with a variety of cellular activities AFR_30825 SM00344 helix_turn_helix ASNC type AFR_30880 SM01119 AFR_30880 AFR_30945 SM00637 AFR_30945 AFR_30950 SM01209 AFR_30950 AFR_30975 SM00382 ATPases associated with a variety of cellular activities AFR_31005 SM00822 AFR_31005 AFR_31020 SM00849 Metallo-beta-lactamase superfamily AFR_31035 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_31035 SM00954 Region found in RelA / SpoT proteins AFR_31055 SM01323 AFR_31055 AFR_31060 SM00382 ATPases associated with a variety of cellular activities AFR_31065 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_31120 SM00838 Elongation factor G C-terminus AFR_31120 SM00889 Elongation factor G, domain IV AFR_31135 SM00052 Putative diguanylate phosphodiesterase AFR_31135 SM00267 diguanylate cyclase AFR_31165 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AFR_31175 SM00448 cheY-homologous receiver domain AFR_31175 SM00862 Transcriptional regulatory protein, C terminal AFR_31180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_31180 SM00387 Histidine kinase-like ATPases AFR_31185 SM00060 Fibronectin type 3 domain AFR_31215 SM00357 Cold shock protein domain AFR_31270 SM00487 DEAD-like helicases superfamily AFR_31270 SM00490 helicase superfamily c-terminal domain AFR_31285 SM00342 helix_turn_helix, arabinose operon control protein AFR_31300 SM00421 helix_turn_helix, Lux Regulon AFR_31300 SM00448 cheY-homologous receiver domain AFR_31305 SM00387 Histidine kinase-like ATPases AFR_31315 SM00382 ATPases associated with a variety of cellular activities AFR_31380 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_31380 SM00331 Sigma factor PP2C-like phosphatases AFR_31445 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_31470 SM00155 Phospholipase D. Active site motifs. AFR_31480 SM00421 helix_turn_helix, Lux Regulon AFR_31480 SM00448 cheY-homologous receiver domain AFR_31495 SM00460 Transglutaminase/protease-like homologues AFR_31525 SM00606 Cellulose Binding Domain Type IV AFR_31550 SM00487 DEAD-like helicases superfamily AFR_31550 SM00490 helicase superfamily c-terminal domain AFR_31550 SM00847 Helicase associated domain (HA2) Add an annotation AFR_31555 SM00052 Putative diguanylate phosphodiesterase AFR_31555 SM00267 diguanylate cyclase AFR_31560 SM00331 Sigma factor PP2C-like phosphatases AFR_31560 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_31570 SM00062 Bacterial periplasmic substrate-binding proteins AFR_31575 SM01234 AFR_31575 AFR_31585 SM00642 Alpha-amylase domain AFR_31590 SM00642 Alpha-amylase domain AFR_31595 SM00642 Alpha-amylase domain AFR_31650 SM00052 Putative diguanylate phosphodiesterase AFR_31650 SM00267 diguanylate cyclase AFR_31655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_31655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_31665 SM00429 ig-like, plexins, transcription factors AFR_31665 SM00645 Papain family cysteine protease AFR_31670 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_31670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_31700 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_31700 SM00387 Histidine kinase-like ATPases AFR_31700 SM00388 His Kinase A (phosphoacceptor) domain AFR_31725 SM00382 ATPases associated with a variety of cellular activities AFR_31730 SM00382 ATPases associated with a variety of cellular activities AFR_31740 SM00631 AFR_31740 AFR_31765 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_31770 SM00776 AFR_31770 AFR_31815 SM00331 Sigma factor PP2C-like phosphatases AFR_31820 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_31880 SM00487 DEAD-like helicases superfamily AFR_31880 SM00490 helicase superfamily c-terminal domain AFR_31890 SM00867 YceI-like domain AFR_31895 SM00421 helix_turn_helix, Lux Regulon AFR_31930 SM00354 helix_turn _helix lactose operon repressor AFR_31940 SM00382 ATPases associated with a variety of cellular activities AFR_31955 SM00382 ATPases associated with a variety of cellular activities AFR_31980 SM00267 diguanylate cyclase AFR_31985 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_32000 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_32015 SM00530 Helix-turn-helix XRE-family like proteins AFR_32025 SM00434 DNA Topoisomerase IV AFR_32030 SM00387 Histidine kinase-like ATPases AFR_32030 SM00433 TopoisomeraseII AFR_32045 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AFR_32050 SM00421 helix_turn_helix, Lux Regulon AFR_32065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_32065 SM00387 Histidine kinase-like ATPases AFR_32065 SM00388 His Kinase A (phosphoacceptor) domain AFR_32070 SM00448 cheY-homologous receiver domain AFR_32070 SM00862 Transcriptional regulatory protein, C terminal AFR_32085 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_32090 SM00564 beta-propeller repeat AFR_32120 SM00354 helix_turn _helix lactose operon repressor AFR_32150 SM00862 Transcriptional regulatory protein, C terminal AFR_32150 SM01043 Bacterial transcriptional activator domain AFR_32180 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_32225 SM00327 von Willebrand factor (vWF) type A domain AFR_32250 SM00465 GIY-YIG type nucleases (URI domain) AFR_32270 SM00506 Appr-1"-p processing enzyme AFR_32275 SM00382 ATPases associated with a variety of cellular activities AFR_32295 SM00382 ATPases associated with a variety of cellular activities AFR_32320 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_32330 SM00788 Adenylosuccinate synthetase AFR_32440 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_32450 SM00091 PAS domain AFR_32450 SM00387 Histidine kinase-like ATPases AFR_32450 SM00388 His Kinase A (phosphoacceptor) domain AFR_32450 SM00448 cheY-homologous receiver domain AFR_32460 SM00960 Roadblock/LC7 domain AFR_32485 SM01400 AFR_32485 AFR_32490 SM00382 ATPases associated with a variety of cellular activities AFR_32500 SM00382 ATPases associated with a variety of cellular activities AFR_32520 SM00458 Ricin-type beta-trefoil AFR_32545 SM00327 von Willebrand factor (vWF) type A domain AFR_32550 SM00327 von Willebrand factor (vWF) type A domain AFR_32590 SM00458 Ricin-type beta-trefoil AFR_32595 SM00560 LamG-like jellyroll fold domain AFR_32600 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_32620 SM00342 helix_turn_helix, arabinose operon control protein AFR_32645 SM00267 diguanylate cyclase AFR_32655 SM00014 Acid phosphatase homologues AFR_32680 SM00849 Metallo-beta-lactamase superfamily AFR_32705 SM00495 Chitin-binding domain type 3 AFR_32730 SM00862 Transcriptional regulatory protein, C terminal AFR_32750 SM00382 ATPases associated with a variety of cellular activities AFR_32775 SM00903 Flavin reductase like domain AFR_32825 SM00421 helix_turn_helix, Lux Regulon AFR_32825 SM00448 cheY-homologous receiver domain AFR_32865 SM00382 ATPases associated with a variety of cellular activities AFR_32885 SM00342 helix_turn_helix, arabinose operon control protein AFR_32895 SM00822 AFR_32895 AFR_32925 SM00829 Enoylreductase AFR_32930 SM00052 Putative diguanylate phosphodiesterase AFR_32930 SM00267 diguanylate cyclase AFR_32935 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. AFR_32950 SM00421 helix_turn_helix, Lux Regulon AFR_32960 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_32995 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_33005 SM00642 Alpha-amylase domain AFR_33030 SM00421 helix_turn_helix, Lux Regulon AFR_33030 SM00448 cheY-homologous receiver domain AFR_33055 SM00267 diguanylate cyclase AFR_33060 SM00052 Putative diguanylate phosphodiesterase AFR_33060 SM00267 diguanylate cyclase AFR_33095 SM00422 helix_turn_helix, mercury resistance AFR_33105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_33120 SM00354 helix_turn _helix lactose operon repressor AFR_33140 SM00642 Alpha-amylase domain AFR_33145 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_33145 SM00710 Parallel beta-helix repeats AFR_33150 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_33150 SM00710 Parallel beta-helix repeats AFR_33155 SM00421 helix_turn_helix, Lux Regulon AFR_33155 SM00448 cheY-homologous receiver domain AFR_33170 SM00947 Carbonic anhydrase AFR_33220 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_33220 SM00387 Histidine kinase-like ATPases AFR_33225 SM00448 cheY-homologous receiver domain AFR_33245 SM00357 Cold shock protein domain AFR_33250 SM00458 Ricin-type beta-trefoil AFR_33255 SM00637 AFR_33255 AFR_33300 SM00382 ATPases associated with a variety of cellular activities AFR_33325 SM00829 Enoylreductase AFR_33330 SM00387 Histidine kinase-like ATPases AFR_33335 SM00421 helix_turn_helix, Lux Regulon AFR_33335 SM00448 cheY-homologous receiver domain AFR_33365 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_33390 SM00382 ATPases associated with a variety of cellular activities AFR_33400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_33420 SM00028 Tetratricopeptide repeats AFR_33440 SM00382 ATPases associated with a variety of cellular activities AFR_33445 SM00382 ATPases associated with a variety of cellular activities AFR_33450 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AFR_33465 SM00098 Alkaline phosphatase homologues AFR_33500 SM00421 helix_turn_helix, Lux Regulon AFR_33510 SM00421 helix_turn_helix, Lux Regulon AFR_33510 SM00448 cheY-homologous receiver domain AFR_33515 SM00387 Histidine kinase-like ATPases AFR_33525 SM00382 ATPases associated with a variety of cellular activities AFR_33535 SM00382 ATPases associated with a variety of cellular activities AFR_33555 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_33595 SM00421 helix_turn_helix, Lux Regulon AFR_33615 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_33630 SM00331 Sigma factor PP2C-like phosphatases AFR_33630 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AFR_33630 SM00422 helix_turn_helix, mercury resistance AFR_33640 SM00354 helix_turn _helix lactose operon repressor AFR_33665 SM00421 helix_turn_helix, Lux Regulon AFR_33665 SM00448 cheY-homologous receiver domain AFR_33690 SM00382 ATPases associated with a variety of cellular activities AFR_33700 SM00052 Putative diguanylate phosphodiesterase AFR_33700 SM00091 PAS domain AFR_33700 SM00267 diguanylate cyclase AFR_33750 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_33800 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_33805 SM00354 helix_turn _helix lactose operon repressor AFR_33840 SM00422 helix_turn_helix, mercury resistance AFR_33860 SM01133 AFR_33860 AFR_33875 SM00382 ATPases associated with a variety of cellular activities AFR_33915 SM00606 Cellulose Binding Domain Type IV AFR_33945 SM00421 helix_turn_helix, Lux Regulon AFR_33945 SM00448 cheY-homologous receiver domain AFR_34015 SM00900 AFR_34015 AFR_34045 SM00421 helix_turn_helix, Lux Regulon AFR_34045 SM00448 cheY-homologous receiver domain AFR_34065 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AFR_34115 SM00448 cheY-homologous receiver domain AFR_34115 SM00862 Transcriptional regulatory protein, C terminal AFR_34120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_34120 SM00387 Histidine kinase-like ATPases AFR_34120 SM00388 His Kinase A (phosphoacceptor) domain AFR_34140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AFR_34145 SM00342 helix_turn_helix, arabinose operon control protein AFR_34155 SM00052 Putative diguanylate phosphodiesterase AFR_34155 SM00267 diguanylate cyclase AFR_34165 SM00421 helix_turn_helix, Lux Regulon AFR_34180 SM00382 ATPases associated with a variety of cellular activities AFR_34190 SM00387 Histidine kinase-like ATPases AFR_34195 SM00421 helix_turn_helix, Lux Regulon AFR_34195 SM00448 cheY-homologous receiver domain AFR_34215 SM00421 helix_turn_helix, Lux Regulon AFR_34215 SM00448 cheY-homologous receiver domain AFR_34255 SM00878 Biotin carboxylase C-terminal domain AFR_34275 SM00191 Integrin alpha (beta-propellor repeats). AFR_34300 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_34340 SM00606 Cellulose Binding Domain Type IV AFR_34345 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_34345 SM00895 AFR_34345 AFR_34395 SM00429 ig-like, plexins, transcription factors AFR_34395 SM00645 Papain family cysteine protease AFR_34400 SM00342 helix_turn_helix, arabinose operon control protein AFR_34410 SM00422 helix_turn_helix, mercury resistance AFR_34425 SM00947 Carbonic anhydrase AFR_34430 SM00028 Tetratricopeptide repeats AFR_34430 SM00267 diguanylate cyclase AFR_34445 SM00382 ATPases associated with a variety of cellular activities AFR_34450 SM00382 ATPases associated with a variety of cellular activities AFR_34455 SM00422 helix_turn_helix, mercury resistance AFR_34495 SM00860 SMI1 / KNR4 family AFR_34545 SM00421 helix_turn_helix, Lux Regulon AFR_34560 SM00091 PAS domain AFR_34560 SM00267 diguanylate cyclase AFR_34575 SM00382 ATPases associated with a variety of cellular activities AFR_34620 SM00421 helix_turn_helix, Lux Regulon AFR_34620 SM00448 cheY-homologous receiver domain AFR_34645 SM00849 Metallo-beta-lactamase superfamily AFR_34660 SM00014 Acid phosphatase homologues AFR_34665 SM00421 helix_turn_helix, Lux Regulon AFR_34665 SM00448 cheY-homologous receiver domain AFR_34740 SM00354 helix_turn _helix lactose operon repressor AFR_34750 SM00354 helix_turn _helix lactose operon repressor AFR_34755 SM00829 Enoylreductase AFR_34770 SM00637 AFR_34770 AFR_34790 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AFR_34795 SM01092 CO dehydrogenase flavoprotein C-terminal domain AFR_34815 SM00052 Putative diguanylate phosphodiesterase AFR_34815 SM00091 PAS domain AFR_34815 SM00267 diguanylate cyclase AFR_34840 SM00796 Allophanate hydrolase subunit 1 AFR_34845 SM00797 Allophanate hydrolase subunit 2 AFR_34850 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_34850 SM00895 AFR_34850 AFR_34935 SM00354 helix_turn _helix lactose operon repressor AFR_34955 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_34955 SM00876 Biotin and Thiamin Synthesis associated domain AFR_34975 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_34975 SM01091 Transporter associated domain AFR_34990 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_35025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_35080 SM00382 ATPases associated with a variety of cellular activities AFR_35090 SM00421 helix_turn_helix, Lux Regulon AFR_35090 SM00448 cheY-homologous receiver domain AFR_35100 SM00829 Enoylreductase AFR_35190 SM00341 Helicase and RNase D C-terminal AFR_35190 SM00474 3'-5' exonuclease AFR_35225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_35225 SM00387 Histidine kinase-like ATPases AFR_35225 SM00388 His Kinase A (phosphoacceptor) domain AFR_35230 SM00448 cheY-homologous receiver domain AFR_35230 SM00862 Transcriptional regulatory protein, C terminal AFR_35250 SM00861 Transketolase, pyrimidine binding domain AFR_35335 SM00382 ATPases associated with a variety of cellular activities AFR_35335 SM00487 DEAD-like helicases superfamily AFR_35365 SM00052 Putative diguanylate phosphodiesterase AFR_35365 SM00267 diguanylate cyclase AFR_35375 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_35375 SM00866 AFR_35375 AFR_35380 SM01133 AFR_35380 AFR_35390 SM00052 Putative diguanylate phosphodiesterase AFR_35390 SM00267 diguanylate cyclase AFR_35390 SM01079 AFR_35390 AFR_35425 SM00881 CoA binding domain AFR_35435 SM00529 Helix-turn-helix diphteria tox regulatory element AFR_35435 SM00899 AFR_35435 AFR_35475 SM00342 helix_turn_helix, arabinose operon control protein AFR_35515 SM00257 Lysin motif AFR_35540 SM00919 Malic enzyme, NAD binding domain AFR_35540 SM01274 AFR_35540 AFR_35590 SM00267 diguanylate cyclase AFR_35595 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_35605 SM00382 ATPases associated with a variety of cellular activities AFR_35610 SM00062 Bacterial periplasmic substrate-binding proteins AFR_35630 SM00530 Helix-turn-helix XRE-family like proteins AFR_35635 SM00322 K homology RNA-binding domain AFR_35635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_35655 SM00382 ATPases associated with a variety of cellular activities AFR_35670 SM00986 Uracil DNA glycosylase superfamily AFR_35670 SM00987 UreE urease accessory protein, C-terminal domain AFR_35685 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_35710 SM00116 Domain in cystathionine beta-synthase and other proteins. AFR_35715 SM01091 Transporter associated domain AFR_35725 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_35740 SM00382 ATPases associated with a variety of cellular activities AFR_35740 SM00487 DEAD-like helicases superfamily AFR_35740 SM00490 helicase superfamily c-terminal domain AFR_35775 SM00862 Transcriptional regulatory protein, C terminal AFR_35775 SM01043 Bacterial transcriptional activator domain AFR_35780 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_35780 SM01232 AFR_35780 AFR_35795 SM00530 Helix-turn-helix XRE-family like proteins AFR_35810 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_35820 SM00382 ATPases associated with a variety of cellular activities AFR_35820 SM00843 AFR_35820 AFR_35840 SM00849 Metallo-beta-lactamase superfamily AFR_35845 SM01130 AFR_35845 AFR_35885 SM00354 helix_turn _helix lactose operon repressor AFR_35910 SM00316 Ribosomal protein S1-like RNA-binding domain AFR_35910 SM00322 K homology RNA-binding domain AFR_35915 SM01387 AFR_35915 AFR_35920 SM00904 Riboflavin kinase AFR_35925 SM00387 Histidine kinase-like ATPases AFR_35925 SM00388 His Kinase A (phosphoacceptor) domain AFR_35925 SM00448 cheY-homologous receiver domain AFR_35945 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_35985 SM00322 K homology RNA-binding domain AFR_36025 SM00331 Sigma factor PP2C-like phosphatases AFR_36025 SM00387 Histidine kinase-like ATPases AFR_36025 SM00388 His Kinase A (phosphoacceptor) domain AFR_36025 SM00448 cheY-homologous receiver domain AFR_36055 SM01230 AFR_36055 AFR_36065 SM00422 helix_turn_helix, mercury resistance AFR_36090 SM00387 Histidine kinase-like ATPases AFR_36095 SM00421 helix_turn_helix, Lux Regulon AFR_36095 SM00448 cheY-homologous receiver domain AFR_36100 SM00382 ATPases associated with a variety of cellular activities AFR_36120 SM00382 ATPases associated with a variety of cellular activities AFR_36235 SM00382 ATPases associated with a variety of cellular activities AFR_36255 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_36345 SM00946 Prolyl-tRNA synthetase, C-terminal AFR_36370 SM00382 ATPases associated with a variety of cellular activities AFR_36370 SM00962 SRP54-type protein, GTPase domain AFR_36370 SM00963 SRP54-type protein, helical bundle domain AFR_36385 SM00984 UDP binding domain AFR_36420 SM00938 Nitrogen regulatory protein P-II AFR_36435 SM00382 ATPases associated with a variety of cellular activities AFR_36435 SM00962 SRP54-type protein, GTPase domain AFR_36435 SM00963 SRP54-type protein, helical bundle domain AFR_36485 SM00968 SMC proteins Flexible Hinge Domain AFR_36515 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_36515 SM01232 AFR_36515 AFR_36525 SM00358 Double-stranded RNA binding motif AFR_36525 SM00535 Ribonuclease III family AFR_36580 SM00487 DEAD-like helicases superfamily AFR_36580 SM00490 helicase superfamily c-terminal domain AFR_36585 SM01120 AFR_36585 AFR_36585 SM01121 AFR_36585 AFR_36630 SM00382 ATPases associated with a variety of cellular activities AFR_36635 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_36655 SM00563 Phosphate acyltransferases AFR_36685 SM00411 bacterial (prokaryotic) histone like domain AFR_36700 SM00346 helix_turn_helix isocitrate lyase regulation AFR_36705 SM00849 Metallo-beta-lactamase superfamily AFR_36725 SM00530 Helix-turn-helix XRE-family like proteins AFR_36735 SM00382 ATPases associated with a variety of cellular activities AFR_36745 SM00342 helix_turn_helix, arabinose operon control protein AFR_36770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_36770 SM00387 Histidine kinase-like ATPases AFR_36770 SM00388 His Kinase A (phosphoacceptor) domain AFR_36775 SM00448 cheY-homologous receiver domain AFR_36775 SM00862 Transcriptional regulatory protein, C terminal AFR_36785 SM00327 von Willebrand factor (vWF) type A domain AFR_36825 SM00382 ATPases associated with a variety of cellular activities AFR_36835 SM00917 LeuA allosteric (dimerisation) domain AFR_36860 SM01329 AFR_36860 AFR_36900 SM00052 Putative diguanylate phosphodiesterase AFR_36900 SM00267 diguanylate cyclase AFR_36930 SM00354 helix_turn _helix lactose operon repressor AFR_36935 SM00052 Putative diguanylate phosphodiesterase AFR_36935 SM00091 PAS domain AFR_36935 SM00267 diguanylate cyclase AFR_36970 SM00845 GatB domain AFR_36985 SM00052 Putative diguanylate phosphodiesterase AFR_36985 SM00267 diguanylate cyclase AFR_36995 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AFR_36995 SM00292 breast cancer carboxy-terminal domain AFR_36995 SM00532 Ligase N family AFR_37025 SM00893 Electron transfer flavoprotein domain AFR_37030 SM00893 Electron transfer flavoprotein domain AFR_37090 SM00382 ATPases associated with a variety of cellular activities AFR_37190 SM00267 diguanylate cyclase AFR_37205 SM00382 ATPases associated with a variety of cellular activities AFR_37250 SM00382 ATPases associated with a variety of cellular activities AFR_37285 SM00382 ATPases associated with a variety of cellular activities AFR_37335 SM00382 ATPases associated with a variety of cellular activities AFR_37395 SM00226 Low molecular weight phosphatase family AFR_37410 SM00267 diguanylate cyclase AFR_37420 SM00937 AFR_37420 AFR_37450 SM00357 Cold shock protein domain AFR_37450 SM00382 ATPases associated with a variety of cellular activities AFR_37450 SM00959 Rho termination factor, N-terminal domain AFR_37475 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_37495 SM00836 DALR anticodon binding domain AFR_37495 SM01016 Arginyl tRNA synthetase N terminal dom AFR_37515 SM00829 Enoylreductase AFR_37540 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain AFR_37540 SM00710 Parallel beta-helix repeats AFR_37550 SM00530 Helix-turn-helix XRE-family like proteins AFR_37590 SM00448 cheY-homologous receiver domain AFR_37590 SM00862 Transcriptional regulatory protein, C terminal AFR_37595 SM00387 Histidine kinase-like ATPases AFR_37595 SM00388 His Kinase A (phosphoacceptor) domain AFR_37605 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_37660 SM00822 AFR_37660 AFR_37690 SM00342 helix_turn_helix, arabinose operon control protein AFR_37720 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AFR_37785 SM00822 AFR_37785 AFR_37790 SM00642 Alpha-amylase domain AFR_37795 SM00752 Horizontally Transferred TransMembrane Domain AFR_37820 SM00495 Chitin-binding domain type 3 AFR_37825 SM00636 AFR_37825 AFR_37855 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_37855 SM01232 AFR_37855 AFR_37900 SM00563 Phosphate acyltransferases AFR_37910 SM00495 Chitin-binding domain type 3 AFR_37910 SM00636 AFR_37910 AFR_37915 SM00382 ATPases associated with a variety of cellular activities AFR_37935 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFR_37940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_37940 SM00387 Histidine kinase-like ATPases AFR_37940 SM00388 His Kinase A (phosphoacceptor) domain AFR_37945 SM00448 cheY-homologous receiver domain AFR_37945 SM00862 Transcriptional regulatory protein, C terminal AFR_37950 SM00563 Phosphate acyltransferases AFR_37960 SM00382 ATPases associated with a variety of cellular activities AFR_37970 SM00861 Transketolase, pyrimidine binding domain AFR_37980 SM00382 ATPases associated with a variety of cellular activities AFR_37985 SM00382 ATPases associated with a variety of cellular activities AFR_37990 SM00382 ATPases associated with a variety of cellular activities AFR_38015 SM00829 Enoylreductase AFR_38020 SM00919 Malic enzyme, NAD binding domain AFR_38020 SM01274 AFR_38020 AFR_38045 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_38045 SM00895 AFR_38045 AFR_38095 SM00387 Histidine kinase-like ATPases AFR_38170 SM00421 helix_turn_helix, Lux Regulon AFR_38170 SM00448 cheY-homologous receiver domain AFR_38175 SM00387 Histidine kinase-like ATPases AFR_38185 SM00495 Chitin-binding domain type 3 AFR_38190 SM00458 Ricin-type beta-trefoil AFR_38355 SM00341 Helicase and RNase D C-terminal AFR_38370 SM00421 helix_turn_helix, Lux Regulon AFR_38370 SM00448 cheY-homologous receiver domain AFR_38440 SM00062 Bacterial periplasmic substrate-binding proteins AFR_38445 SM00382 ATPases associated with a variety of cellular activities AFR_38460 SM00563 Phosphate acyltransferases AFR_38465 SM00357 Cold shock protein domain AFR_38485 SM00354 helix_turn _helix lactose operon repressor AFR_38555 SM00342 helix_turn_helix, arabinose operon control protein AFR_38565 SM00422 helix_turn_helix, mercury resistance AFR_38565 SM00480 DNA polymerase III beta subunit AFR_38585 SM00822 AFR_38585 AFR_38590 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_38645 SM00478 endonuclease III AFR_38795 SM00267 diguanylate cyclase AFR_38860 SM00382 ATPases associated with a variety of cellular activities AFR_38865 SM00382 ATPases associated with a variety of cellular activities AFR_38920 SM00421 helix_turn_helix, Lux Regulon AFR_38925 SM00421 helix_turn_helix, Lux Regulon AFR_38925 SM00448 cheY-homologous receiver domain AFR_38970 SM00829 Enoylreductase AFR_39015 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_39015 SM00458 Ricin-type beta-trefoil AFR_39015 SM00606 Cellulose Binding Domain Type IV AFR_39020 SM00458 Ricin-type beta-trefoil AFR_39040 SM01208 AFR_39040 AFR_39055 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_39070 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_39150 SM00342 helix_turn_helix, arabinose operon control protein AFR_39150 SM00478 endonuclease III AFR_39150 SM01009 AlkA N-terminal domain AFR_39165 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_39170 SM00560 LamG-like jellyroll fold domain AFR_39240 SM00020 Trypsin-like serine protease AFR_39250 SM00670 Large family of predicted nucleotide-binding domains AFR_39345 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_39375 SM00382 ATPases associated with a variety of cellular activities AFR_39385 SM00878 Biotin carboxylase C-terminal domain AFR_39400 SM00460 Transglutaminase/protease-like homologues AFR_39445 SM00849 Metallo-beta-lactamase superfamily AFR_39465 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_39500 SM01133 AFR_39500 AFR_39540 SM00960 Roadblock/LC7 domain AFR_39545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_39545 SM00387 Histidine kinase-like ATPases AFR_39565 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AFR_39585 SM00382 ATPases associated with a variety of cellular activities AFR_39645 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_39680 SM00813 Alpha-L-arabinofuranosidase C-terminus AFR_39685 SM00354 helix_turn _helix lactose operon repressor AFR_39720 SM01400 AFR_39720 AFR_39760 SM00825 Beta-ketoacyl synthase AFR_39760 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFR_39765 SM00822 AFR_39765 AFR_39765 SM00825 Beta-ketoacyl synthase AFR_39765 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AFR_39785 SM00382 ATPases associated with a variety of cellular activities AFR_39800 SM00650 Ribosomal RNA adenine dimethylases AFR_39855 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_39855 SM00387 Histidine kinase-like ATPases AFR_39895 SM00852 Probable molybdopterin binding domain AFR_39905 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_39905 SM00267 diguanylate cyclase AFR_39905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_39915 SM00834 Putative regulatory protein AFR_39965 SM00481 DNA polymerase alpha chain like domain AFR_39995 SM00305 Hint (Hedgehog/Intein) domain C-terminal region AFR_39995 SM00306 Hint (Hedgehog/Intein) domain N-terminal region AFR_40000 SM00881 CoA binding domain AFR_40045 SM00924 MgtE intracellular N domain AFR_40065 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AFR_40095 SM00020 Trypsin-like serine protease AFR_40150 SM00834 Putative regulatory protein AFR_40165 SM01004 Delta-aminolevulinic acid dehydratase AFR_40185 SM00881 CoA binding domain AFR_40215 SM00563 Phosphate acyltransferases AFR_40250 SM00637 AFR_40250 AFR_40250 SM00710 Parallel beta-helix repeats AFR_40270 SM00448 cheY-homologous receiver domain AFR_40270 SM00862 Transcriptional regulatory protein, C terminal AFR_40275 SM00387 Histidine kinase-like ATPases AFR_40275 SM00388 His Kinase A (phosphoacceptor) domain AFR_40285 SM00855 Phosphoglycerate mutase family AFR_40295 SM00260 Two component signalling adaptor domain AFR_40300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_40300 SM00091 PAS domain AFR_40300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_40335 SM00448 cheY-homologous receiver domain AFR_40350 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AFR_40350 SM00387 Histidine kinase-like ATPases AFR_40350 SM00388 His Kinase A (phosphoacceptor) domain AFR_40365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_40365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_40450 SM00382 ATPases associated with a variety of cellular activities AFR_40560 SM00448 cheY-homologous receiver domain AFR_40570 SM00448 cheY-homologous receiver domain AFR_40575 SM00138 Methyltransferase, chemotaxis proteins AFR_40580 SM00448 cheY-homologous receiver domain AFR_40590 SM00260 Two component signalling adaptor domain AFR_40595 SM00073 Histidine Phosphotransfer domain AFR_40595 SM00260 Two component signalling adaptor domain AFR_40595 SM00387 Histidine kinase-like ATPases AFR_40595 SM01231 AFR_40595 AFR_40600 SM00448 cheY-homologous receiver domain AFR_40600 SM00862 Transcriptional regulatory protein, C terminal AFR_40605 SM00388 His Kinase A (phosphoacceptor) domain AFR_40630 SM00354 helix_turn _helix lactose operon repressor AFR_40635 SM00506 Appr-1"-p processing enzyme AFR_40670 SM00530 Helix-turn-helix XRE-family like proteins AFR_40730 SM00450 Rhodanese Homology Domain AFR_40745 SM00862 Transcriptional regulatory protein, C terminal AFR_40780 SM00382 ATPases associated with a variety of cellular activities AFR_40820 SM00487 DEAD-like helicases superfamily AFR_40820 SM00491 AFR_40820 AFR_40830 SM00883 Chaperonin 10 Kd subunit AFR_40910 SM00382 ATPases associated with a variety of cellular activities AFR_40925 SM00382 ATPases associated with a variety of cellular activities AFR_40925 SM01073 Cell division protein 48 (CDC48) N-terminal domain AFR_40935 SM00382 ATPases associated with a variety of cellular activities AFR_40935 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AFR_40975 SM00495 Chitin-binding domain type 3 AFR_40980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_40980 SM00387 Histidine kinase-like ATPases AFR_40980 SM00388 His Kinase A (phosphoacceptor) domain AFR_40985 SM00448 cheY-homologous receiver domain AFR_40985 SM00862 Transcriptional regulatory protein, C terminal AFR_41015 SM00420 helix_turn_helix, Deoxyribose operon repressor AFR_41015 SM01134 AFR_41015 AFR_41085 SM00382 ATPases associated with a variety of cellular activities AFR_41095 SM00967 RNA 2'-O ribose methyltransferase substrate binding AFR_41100 SM00840 AFR_41100 AFR_41145 SM00344 helix_turn_helix ASNC type AFR_41175 SM00382 ATPases associated with a variety of cellular activities AFR_41180 SM00387 Histidine kinase-like ATPases AFR_41185 SM00421 helix_turn_helix, Lux Regulon AFR_41185 SM00448 cheY-homologous receiver domain AFR_41200 SM00564 beta-propeller repeat AFR_41225 SM00458 Ricin-type beta-trefoil AFR_41260 SM00028 Tetratricopeptide repeats AFR_41280 SM01058 CarD-like/TRCF domain AFR_41320 SM00382 ATPases associated with a variety of cellular activities AFR_41345 SM00478 endonuclease III AFR_41345 SM00525 AFR_41345 AFR_41355 SM00382 ATPases associated with a variety of cellular activities AFR_41355 SM01086 C-terminal, D2-small domain, of ClpB protein AFR_41435 SM00382 ATPases associated with a variety of cellular activities AFR_41465 SM00905 Dihydroneopterin aldolase AFR_41540 SM00382 ATPases associated with a variety of cellular activities AFR_41575 SM00382 ATPases associated with a variety of cellular activities AFR_41600 SM00478 endonuclease III AFR_41600 SM00525 AFR_41600 AFR_41605 SM00854 Bacterial capsule synthesis protein PGA_cap AFR_41610 SM00100 Cyclic nucleotide-monophosphate binding domain AFR_41610 SM00419 helix_turn_helix, cAMP Regulatory protein AFR_41620 SM00878 Biotin carboxylase C-terminal domain AFR_41625 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_41630 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain AFR_41635 SM00849 Metallo-beta-lactamase superfamily AFR_41700 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_41710 SM00897 FIST N domain AFR_41710 SM01204 AFR_41710 AFR_41715 SM00052 Putative diguanylate phosphodiesterase AFR_41715 SM00267 diguanylate cyclase AFR_41725 SM00495 Chitin-binding domain type 3 AFR_41730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AFR_41740 SM00859 Semialdehyde dehydrogenase, NAD binding domain AFR_41755 SM00917 LeuA allosteric (dimerisation) domain AFR_41775 SM00382 ATPases associated with a variety of cellular activities AFR_41780 SM00382 ATPases associated with a variety of cellular activities AFR_41800 SM00493 AFR_41800 AFR_41810 SM00382 ATPases associated with a variety of cellular activities AFR_41835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AFR_41930 SM00481 DNA polymerase alpha chain like domain AFR_41945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_41945 SM00387 Histidine kinase-like ATPases AFR_41950 SM00960 Roadblock/LC7 domain AFR_42015 SM00637 AFR_42015 AFR_42025 SM00347 helix_turn_helix multiple antibiotic resistance protein AFR_42050 SM00267 diguanylate cyclase AFR_42075 SM00530 Helix-turn-helix XRE-family like proteins AFR_42115 SM00487 DEAD-like helicases superfamily AFR_42115 SM00490 helicase superfamily c-terminal domain AFR_42125 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AFR_42150 SM00382 ATPases associated with a variety of cellular activities AFR_42155 SM00345 helix_turn_helix gluconate operon transcriptional repressor AFR_42160 SM00422 helix_turn_helix, mercury resistance AFR_42170 SM00028 Tetratricopeptide repeats AFR_42190 SM00530 Helix-turn-helix XRE-family like proteins AFR_42215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AFR_42215 SM00387 Histidine kinase-like ATPases AFR_42215 SM00388 His Kinase A (phosphoacceptor) domain AFR_42265 SM00422 helix_turn_helix, mercury resistance AFR_42300 SM00458 Ricin-type beta-trefoil AFR_42305 SM00458 Ricin-type beta-trefoil AFR_42310 SM00829 Enoylreductase AFR_42330 SM00422 helix_turn_helix, mercury resistance AFR_42340 SM00861 Transketolase, pyrimidine binding domain AFR_42420 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AFR_42420 SM01232 AFR_42420 AFR_42430 SM00387 Histidine kinase-like ATPases AFR_42435 SM00448 cheY-homologous receiver domain AFR_42435 SM00850 LytTr DNA-binding domain AFR_42440 SM00448 cheY-homologous receiver domain AFR_42440 SM00862 Transcriptional regulatory protein, C terminal AFR_42445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AFR_42445 SM00387 Histidine kinase-like ATPases AFR_42445 SM00388 His Kinase A (phosphoacceptor) domain AFR_42470 SM00382 ATPases associated with a variety of cellular activities AFR_42485 SM00903 Flavin reductase like domain AFR_42515 SM00450 Rhodanese Homology Domain AFR_42525 SM00091 PAS domain AFR_42525 SM00387 Histidine kinase-like ATPases AFR_42525 SM00388 His Kinase A (phosphoacceptor) domain AFR_42615 SM00344 helix_turn_helix ASNC type AFR_42665 SM00729 Elongator protein 3, MiaB family, Radical SAM AFR_42725 SM00852 Probable molybdopterin binding domain AFR_42730 SM00852 Probable molybdopterin binding domain AFR_42740 SM00052 Putative diguanylate phosphodiesterase AFR_42740 SM00267 diguanylate cyclase AFR_42805 SM00382 ATPases associated with a variety of cellular activities AFR_42840 SM00518 AP endonuclease family 2 AFR_42900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AFR_42915 SM00220 Serine/Threonine protein kinases, catalytic domain AFR_42940 SM00646 AFR_42940 AFR_42965 SM00470 ParB-like nuclease domain AFR_42980 SM00393 Putative single-stranded nucleic acids-binding domain AFR_42990 SM01234 AFR_42990