locus-tag class description Amir_0001 PF08299 Bacterial dnaA protein helix-turn-helix Amir_0001 PF00308 Bacterial dnaA protein Amir_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain Amir_0002 PF02767 DNA polymerase III beta subunit, central domain Amir_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain Amir_0003 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Amir_0003 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Amir_0004 PF02463 RecF/RecN/SMC N terminal domain Amir_0005 PF05258 Dna[CI] antecedent, DciA Amir_0006 PF00204 DNA gyrase B Amir_0006 PF00986 DNA gyrase B subunit, carboxyl terminus Amir_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_0006 PF01751 Toprim domain Amir_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller Amir_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A Amir_0008 PF12089 Transmembrane domain of unknown function (DUF3566) Amir_0010 PF07681 DoxX Amir_0013 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Amir_0014 PF01694 Rhomboid family Amir_0016 PF06781 Cell division protein CrgA Amir_0017 PF04203 Sortase domain Amir_0019 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_0020 PF00117 Glutamine amidotransferase class-I Amir_0021 PF00069 Protein kinase domain Amir_0021 PF03793 PASTA domain Amir_0022 PF00069 Protein kinase domain Amir_0023 PF00905 Penicillin binding protein transpeptidase domain Amir_0024 PF01098 Cell cycle protein Amir_0026 PF16697 Inner membrane component of T3SS, cytoplasmic domain Amir_0027 PF12401 Protein of unknown function (DUF2662) Amir_0027 PF00498 FHA domain Amir_0030 PF04030 D-arabinono-1,4-lactone oxidase Amir_0030 PF01565 FAD binding domain Amir_0032 PF17925 Tetracyclin repressor-like, C-terminal domain Amir_0032 PF00440 Bacterial regulatory proteins, tetR family Amir_0033 PF00232 Glycosyl hydrolase family 1 Amir_0035 PF00106 short chain dehydrogenase Amir_0038 PF01636 Phosphotransferase enzyme family Amir_0038 PF18085 Maltokinase N-terminal cap domain Amir_0044 PF02028 BCCT, betaine/carnitine/choline family transporter Amir_0047 PF00106 short chain dehydrogenase Amir_0058 PF01209 ubiE/COQ5 methyltransferase family Amir_0064 PF06580 Histidine kinase Amir_0064 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_0064 PF13492 GAF domain Amir_0064 PF07694 5TMR of 5TMR-LYT Amir_0066 PF06965 Na+/H+ antiporter 1 Amir_0066 PF01343 Peptidase family S49 Amir_0067 PF00072 Response regulator receiver domain Amir_0067 PF04397 LytTr DNA-binding domain Amir_0069 PF00474 Sodium:solute symporter family Amir_0071 PF00474 Sodium:solute symporter family Amir_0072 PF12728 Helix-turn-helix domain Amir_0074 PF00581 Rhodanese-like domain Amir_0076 PF03009 Glycerophosphoryl diester phosphodiesterase family Amir_0077 PF00067 Cytochrome P450 Amir_0078 PF03009 Glycerophosphoryl diester phosphodiesterase family Amir_0079 PF07517 SecA DEAD-like domain Amir_0079 PF07516 SecA Wing and Scaffold domain Amir_0079 PF02810 SEC-C motif Amir_0079 PF01043 SecA preprotein cross-linking domain Amir_0082 PF00210 Ferritin-like domain Amir_0092 PF01654 Cytochrome bd terminal oxidase subunit I Amir_0093 PF02322 Cytochrome bd terminal oxidase subunit II Amir_0095 PF00005 ABC transporter Amir_0095 PF00664 ABC transporter transmembrane region Amir_0096 PF13492 GAF domain Amir_0096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_0096 PF07730 Histidine kinase Amir_0096 PF13185 GAF domain Amir_0097 PF00072 Response regulator receiver domain Amir_0097 PF00196 Bacterial regulatory proteins, luxR family Amir_0098 PF00583 Acetyltransferase (GNAT) family Amir_0100 PF00800 Prephenate dehydratase Amir_0100 PF01842 ACT domain Amir_0109 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Amir_0110 PF13802 Galactose mutarotase-like Amir_0110 PF01055 Glycosyl hydrolases family 31 Amir_0115 PF03738 Glutathionylspermidine synthase preATP-grasp Amir_0116 PF03994 Domain of Unknown Function (DUF350) Amir_0118 PF02403 Seryl-tRNA synthetase N-terminal domain Amir_0118 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Amir_0119 PF01266 FAD dependent oxidoreductase Amir_0123 PF00535 Glycosyl transferase family 2 Amir_0125 PF01757 Acyltransferase family Amir_0128 PF03275 UDP-galactopyranose mutase Amir_0133 PF00005 ABC transporter Amir_0134 PF01061 ABC-2 type transporter Amir_0135 PF10759 Protein of unknown function (DUF2587) Amir_0136 PF00266 Aminotransferase class-V Amir_0139 PF16197 Ketoacyl-synthetase C-terminal extension Amir_0139 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_0139 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_0139 PF00107 Zinc-binding dehydrogenase Amir_0139 PF08240 Alcohol dehydrogenase GroES-like domain Amir_0139 PF00698 Acyl transferase domain Amir_0139 PF00550 Phosphopantetheine attachment site Amir_0139 PF14765 Polyketide synthase dehydratase Amir_0139 PF08659 KR domain Amir_0140 PF13302 Acetyltransferase (GNAT) domain Amir_0141 PF04389 Peptidase family M28 Amir_0141 PF02225 PA domain Amir_0142 PF04228 Putative neutral zinc metallopeptidase Amir_0143 PF00746 LPXTG cell wall anchor motif Amir_0143 PF02872 5'-nucleotidase, C-terminal domain Amir_0143 PF00565 Staphylococcal nuclease homologue Amir_0143 PF00149 Calcineurin-like phosphoesterase Amir_0146 PF00155 Aminotransferase class I and II Amir_0152 PF13193 AMP-binding enzyme C-terminal domain Amir_0152 PF00501 AMP-binding enzyme Amir_0154 PF00768 D-alanyl-D-alanine carboxypeptidase Amir_0154 PF07943 Penicillin-binding protein 5, C-terminal domain Amir_0155 PF17961 Bacterial Ig domain Amir_0155 PF17210 SdrD B-like domain Amir_0155 PF04650 YSIRK type signal peptide Amir_0156 PF16363 GDP-mannose 4,6 dehydratase Amir_0160 PF00145 C-5 cytosine-specific DNA methylase Amir_0164 PF02803 Thiolase, C-terminal domain Amir_0164 PF00108 Thiolase, N-terminal domain Amir_0168 PF02153 Prephenate dehydrogenase Amir_0169 PF01546 Peptidase family M20/M25/M40 Amir_0169 PF07687 Peptidase dimerisation domain Amir_0171 PF14437 MafB19-like deaminase Amir_0172 PF14659 Phage integrase, N-terminal SAM-like domain Amir_0172 PF00589 Phage integrase family Amir_0173 PF12728 Helix-turn-helix domain Amir_0174 PF12307 Protein of unknown function (DUF3631) Amir_0185 PF03781 Sulfatase-modifying factor enzyme 1 Amir_0198 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_0198 PF08447 PAS fold Amir_0198 PF13426 PAS domain Amir_0199 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_0199 PF00672 HAMP domain Amir_0199 PF12729 Four helix bundle sensory module for signal transduction Amir_0201 PF12169 DNA polymerase III subunits gamma and tau domain III Amir_0202 PF02575 YbaB/EbfC DNA-binding family Amir_0203 PF02132 RecR protein Amir_0203 PF13662 Toprim domain Amir_0205 PF03704 Bacterial transcriptional activator domain Amir_0205 PF00931 NB-ARC domain Amir_0205 PF00486 Transcriptional regulatory protein, C terminal Amir_0206 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_0209 PF00005 ABC transporter Amir_0209 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_0210 PF00005 ABC transporter Amir_0210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_0211 PF02384 N-6 DNA Methylase Amir_0213 PF00682 HMGL-like Amir_0213 PF08502 LeuA allosteric (dimerisation) domain Amir_0217 PF13840 ACT domain Amir_0217 PF01842 ACT domain Amir_0217 PF00696 Amino acid kinase family Amir_0218 PF01118 Semialdehyde dehydrogenase, NAD binding domain Amir_0218 PF02774 Semialdehyde dehydrogenase, dimerisation domain Amir_0219 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Amir_0219 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Amir_0222 PF06628 Catalase-related immune-responsive Amir_0222 PF00199 Catalase Amir_0223 PF02566 OsmC-like protein Amir_0224 PF00210 Ferritin-like domain Amir_0225 PF03358 NADPH-dependent FMN reductase Amir_0226 PF07859 alpha/beta hydrolase fold Amir_0227 PF00326 Prolyl oligopeptidase family Amir_0228 PF08241 Methyltransferase domain Amir_0233 PF00149 Calcineurin-like phosphoesterase Amir_0235 PF00905 Penicillin binding protein transpeptidase domain Amir_0235 PF00912 Transglycosylase Amir_0236 PF02467 Transcription factor WhiB Amir_0237 PF02374 Anion-transporting ATPase Amir_0238 PF02374 Anion-transporting ATPase Amir_0248 PF00753 Metallo-beta-lactamase superfamily Amir_0248 PF16123 Hydroxyacylglutathione hydrolase C-terminus Amir_0251 PF00712 DNA polymerase III beta subunit, N-terminal domain Amir_0251 PF02767 DNA polymerase III beta subunit, central domain Amir_0251 PF02768 DNA polymerase III beta subunit, C-terminal domain Amir_0252 PF00083 Sugar (and other) transporter Amir_0253 PF00027 Cyclic nucleotide-binding domain Amir_0253 PF13545 Crp-like helix-turn-helix domain Amir_0255 PF00633 Helix-hairpin-helix motif Amir_0255 PF00730 HhH-GPD superfamily base excision DNA repair protein Amir_0255 PF10576 Iron-sulfur binding domain of endonuclease III Amir_0256 PF00578 AhpC/TSA family Amir_0257 PF00293 NUDIX domain Amir_0258 PF02674 Colicin V production protein Amir_0259 PF00561 alpha/beta hydrolase fold Amir_0261 PF06965 Na+/H+ antiporter 1 Amir_0262 PF13193 AMP-binding enzyme C-terminal domain Amir_0262 PF00501 AMP-binding enzyme Amir_0262 PF16177 Acetyl-coenzyme A synthetase N-terminus Amir_0265 PF00266 Aminotransferase class-V Amir_0266 PF03301 Tryptophan 2,3-dioxygenase Amir_0267 PF01037 Lrp/AsnC ligand binding domain Amir_0268 PF01380 SIS domain Amir_0269 PF01418 Helix-turn-helix domain, rpiR family Amir_0269 PF01380 SIS domain Amir_0270 PF00144 Beta-lactamase Amir_0271 PF07075 Protein of unknown function (DUF1343) Amir_0273 PF00933 Glycosyl hydrolase family 3 N terminal domain Amir_0273 PF01915 Glycosyl hydrolase family 3 C-terminal domain Amir_0276 PF00437 Type II/IV secretion system protein Amir_0283 PF00270 DEAD/DEAH box helicase Amir_0283 PF00271 Helicase conserved C-terminal domain Amir_0283 PF09369 Domain of unknown function (DUF1998) Amir_0284 PF03030 Inorganic H+ pyrophosphatase Amir_0291 PF13368 Topoisomerase C-terminal repeat Amir_0291 PF01751 Toprim domain Amir_0291 PF01131 DNA topoisomerase Amir_0293 PF02223 Thymidylate kinase Amir_0294 PF12169 DNA polymerase III subunits gamma and tau domain III Amir_0296 PF01032 FecCD transport family Amir_0297 PF01497 Periplasmic binding protein Amir_0298 PF00005 ABC transporter Amir_0300 PF00296 Luciferase-like monooxygenase Amir_0306 PF07690 Major Facilitator Superfamily Amir_0307 PF00719 Inorganic pyrophosphatase Amir_0310 PF01171 PP-loop family Amir_0310 PF09179 TilS substrate binding domain Amir_0313 PF01434 Peptidase family M41 Amir_0313 PF00004 ATPase family associated with various cellular activities (AAA) Amir_0313 PF17862 AAA+ lid domain Amir_0314 PF01227 GTP cyclohydrolase I Amir_0315 PF00809 Pterin binding enzyme Amir_0316 PF02152 Dihydroneopterin aldolase Amir_0317 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Amir_0320 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Amir_0325 PF02569 Pantoate-beta-alanine ligase Amir_0326 PF02261 Aspartate decarboxylase Amir_0327 PF03309 Type III pantothenate kinase Amir_0328 PF08241 Methyltransferase domain Amir_0329 PF00152 tRNA synthetases class II (D, K and N) Amir_0329 PF01336 OB-fold nucleic acid binding domain Amir_0330 PF11774 Lsr2 Amir_0331 PF01032 FecCD transport family Amir_0332 PF01032 FecCD transport family Amir_0333 PF00005 ABC transporter Amir_0335 PF02861 Clp amino terminal domain, pathogenicity island component Amir_0335 PF10431 C-terminal, D2-small domain, of ClpB protein Amir_0335 PF00004 ATPase family associated with various cellular activities (AAA) Amir_0335 PF17871 AAA lid domain Amir_0335 PF07724 AAA domain (Cdc48 subfamily) Amir_0336 PF01470 Pyroglutamyl peptidase Amir_0338 PF02146 Sir2 family Amir_0339 PF03992 Antibiotic biosynthesis monooxygenase Amir_0340 PF11838 ERAP1-like C-terminal domain Amir_0340 PF01433 Peptidase family M1 domain Amir_0343 PF10576 Iron-sulfur binding domain of endonuclease III Amir_0343 PF00730 HhH-GPD superfamily base excision DNA repair protein Amir_0343 PF00633 Helix-hairpin-helix motif Amir_0344 PF00484 Carbonic anhydrase Amir_0346 PF00356 Bacterial regulatory proteins, lacI family Amir_0347 PF00356 Bacterial regulatory proteins, lacI family Amir_0348 PF01547 Bacterial extracellular solute-binding protein Amir_0349 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0350 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0351 PF00005 ABC transporter Amir_0351 PF08402 TOBE domain Amir_0353 PF00005 ABC transporter Amir_0354 PF00950 ABC 3 transport family Amir_0355 PF00072 Response regulator receiver domain Amir_0355 PF00990 Diguanylate cyclase, GGDEF domain Amir_0358 PF03062 MBOAT, membrane-bound O-acyltransferase family Amir_0359 PF00588 SpoU rRNA Methylase family Amir_0359 PF08032 RNA 2'-O ribose methyltransferase substrate binding Amir_0360 PF09190 DALR domain Amir_0360 PF01406 tRNA synthetases class I (C) catalytic domain Amir_0361 PF13419 Haloacid dehalogenase-like hydrolase Amir_0362 PF02542 YgbB family Amir_0363 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Amir_0364 PF02559 CarD-like/TRCF domain Amir_0366 PF18073 Rubredoxin metal binding domain Amir_0368 PF00106 short chain dehydrogenase Amir_0371 PF00982 Glycosyltransferase family 20 Amir_0375 PF00672 HAMP domain Amir_0375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_0376 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_0378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_0378 PF00512 His Kinase A (phospho-acceptor) domain Amir_0378 PF00672 HAMP domain Amir_0379 PF00486 Transcriptional regulatory protein, C terminal Amir_0379 PF00072 Response regulator receiver domain Amir_0380 PF00175 Oxidoreductase NAD-binding domain Amir_0380 PF00111 2Fe-2S iron-sulfur cluster binding domain Amir_0384 PF03747 ADP-ribosylglycohydrolase Amir_0385 PF03704 Bacterial transcriptional activator domain Amir_0385 PF00931 NB-ARC domain Amir_0385 PF00486 Transcriptional regulatory protein, C terminal Amir_0389 PF00296 Luciferase-like monooxygenase Amir_0390 PF03466 LysR substrate binding domain Amir_0390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_0392 PF13860 FlgD Ig-like domain Amir_0392 PF00082 Subtilase family Amir_0392 PF02225 PA domain Amir_0392 PF05922 Peptidase inhibitor I9 Amir_0393 PF01557 Fumarylacetoacetate (FAA) hydrolase family Amir_0394 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amir_0394 PF13378 Enolase C-terminal domain-like Amir_0396 PF00248 Aldo/keto reductase family Amir_0399 PF00392 Bacterial regulatory proteins, gntR family Amir_0399 PF07729 FCD domain Amir_0400 PF01380 SIS domain Amir_0401 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0402 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0404 PF00392 Bacterial regulatory proteins, gntR family Amir_0404 PF07702 UTRA domain Amir_0405 PF00291 Pyridoxal-phosphate dependent enzyme Amir_0406 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Amir_0407 PF02581 Thiamine monophosphate synthase Amir_0410 PF05690 Thiazole biosynthesis protein ThiG Amir_0411 PF01047 MarR family Amir_0412 PF04072 Leucine carboxyl methyltransferase Amir_0422 PF00107 Zinc-binding dehydrogenase Amir_0422 PF08240 Alcohol dehydrogenase GroES-like domain Amir_0424 PF08543 Phosphomethylpyrimidine kinase Amir_0425 PF01964 Radical SAM ThiC family Amir_0425 PF13667 ThiC-associated domain Amir_0427 PF01327 Polypeptide deformylase Amir_0430 PF07729 FCD domain Amir_0430 PF00392 Bacterial regulatory proteins, gntR family Amir_0431 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Amir_0432 PF17862 AAA+ lid domain Amir_0432 PF00004 ATPase family associated with various cellular activities (AAA) Amir_0432 PF01434 Peptidase family M41 Amir_0435 PF01066 CDP-alcohol phosphatidyltransferase Amir_0436 PF02666 Phosphatidylserine decarboxylase Amir_0438 PF03454 MoeA C-terminal region (domain IV) Amir_0438 PF03453 MoeA N-terminal region (domain I and II) Amir_0438 PF00994 Probable molybdopterin binding domain Amir_0440 PF00313 'Cold-shock' DNA-binding domain Amir_0441 PF00069 Protein kinase domain Amir_0441 PF14032 PknH-like extracellular domain Amir_0442 PF00118 TCP-1/cpn60 chaperonin family Amir_0445 PF03932 CutC family Amir_0447 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0448 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0449 PF02838 Glycosyl hydrolase family 20, domain 2 Amir_0449 PF00728 Glycosyl hydrolase family 20, catalytic domain Amir_0449 PF07691 PA14 domain Amir_0452 PF18374 Enolase N-terminal domain-like Amir_0452 PF13378 Enolase C-terminal domain-like Amir_0459 PF03259 Roadblock/LC7 domain Amir_0465 PF00390 Malic enzyme, N-terminal domain Amir_0465 PF03949 Malic enzyme, NAD binding domain Amir_0466 PF01967 MoaC family Amir_0467 PF01967 MoaC family Amir_0467 PF00994 Probable molybdopterin binding domain Amir_0468 PF02391 MoaE protein Amir_0469 PF06737 Transglycosylase-like domain Amir_0471 PF04055 Radical SAM superfamily Amir_0471 PF06463 Molybdenum Cofactor Synthesis C Amir_0472 PF01047 MarR family Amir_0473 PF13344 Haloacid dehalogenase-like hydrolase Amir_0476 PF03733 Inner membrane component domain Amir_0477 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_0477 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_0479 PF13419 Haloacid dehalogenase-like hydrolase Amir_0481 PF00313 'Cold-shock' DNA-binding domain Amir_0483 PF07690 Major Facilitator Superfamily Amir_0485 PF11228 Protein of unknown function (DUF3027) Amir_0488 PF00860 Permease family Amir_0489 PF01047 MarR family Amir_0490 PF05977 Transmembrane secretion effector Amir_0492 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Amir_0492 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Amir_0493 PF00005 ABC transporter Amir_0496 PF00588 SpoU rRNA Methylase family Amir_0497 PF10801 Protein of unknown function (DUF2537) Amir_0498 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Amir_0498 PF00326 Prolyl oligopeptidase family Amir_0500 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain Amir_0500 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain Amir_0500 PF02278 Polysaccharide lyase family 8, super-sandwich domain Amir_0501 PF01243 Pyridoxamine 5'-phosphate oxidase Amir_0501 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Amir_0502 PF01774 UreD urease accessory protein Amir_0504 PF02492 CobW/HypB/UreG, nucleotide-binding domain Amir_0505 PF01730 UreF Amir_0506 PF00449 Urease alpha-subunit, N-terminal domain Amir_0506 PF01979 Amidohydrolase family Amir_0507 PF00699 Urease beta subunit Amir_0508 PF00547 Urease, gamma subunit Amir_0509 PF00285 Citrate synthase, C-terminal domain Amir_0510 PF13732 Domain of unknown function (DUF4162) Amir_0510 PF00005 ABC transporter Amir_0513 PF00196 Bacterial regulatory proteins, luxR family Amir_0513 PF00072 Response regulator receiver domain Amir_0514 PF00266 Aminotransferase class-V Amir_0515 PF11268 Protein of unknown function (DUF3071) Amir_0519 PF00664 ABC transporter transmembrane region Amir_0519 PF00005 ABC transporter Amir_0520 PF00005 ABC transporter Amir_0520 PF00664 ABC transporter transmembrane region Amir_0521 PF00440 Bacterial regulatory proteins, tetR family Amir_0521 PF16859 Tetracyclin repressor-like, C-terminal domain Amir_0522 PF13520 Amino acid permease Amir_0523 PF01263 Aldose 1-epimerase Amir_0524 PF01979 Amidohydrolase family Amir_0525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_0525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_0525 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_0527 PF00294 pfkB family carbohydrate kinase Amir_0528 PF00285 Citrate synthase, C-terminal domain Amir_0529 PF03441 FAD binding domain of DNA photolyase Amir_0529 PF00875 DNA photolyase Amir_0530 PF00072 Response regulator receiver domain Amir_0530 PF00196 Bacterial regulatory proteins, luxR family Amir_0533 PF00005 ABC transporter Amir_0533 PF13732 Domain of unknown function (DUF4162) Amir_0538 PF07969 Amidohydrolase family Amir_0539 PF00107 Zinc-binding dehydrogenase Amir_0539 PF16884 N-terminal domain of oxidoreductase Amir_0542 PF01580 FtsK/SpoIIIE family Amir_0547 PF12146 Serine aminopeptidase, S33 Amir_0548 PF03466 LysR substrate binding domain Amir_0548 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_0549 PF02567 Phenazine biosynthesis-like protein Amir_0550 PF03466 LysR substrate binding domain Amir_0550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_0551 PF05368 NmrA-like family Amir_0552 PF01638 HxlR-like helix-turn-helix Amir_0555 PF00350 Dynamin family Amir_0556 PF00350 Dynamin family Amir_0559 PF00072 Response regulator receiver domain Amir_0559 PF00196 Bacterial regulatory proteins, luxR family Amir_0561 PF12894 Anaphase-promoting complex subunit 4 WD40 domain Amir_0561 PF00400 WD domain, G-beta repeat Amir_0563 PF12833 Helix-turn-helix domain Amir_0563 PF00730 HhH-GPD superfamily base excision DNA repair protein Amir_0563 PF02805 Metal binding domain of Ada Amir_0563 PF06029 AlkA N-terminal domain Amir_0570 PF17961 Bacterial Ig domain Amir_0570 PF00746 LPXTG cell wall anchor motif Amir_0570 PF17210 SdrD B-like domain Amir_0570 PF04650 YSIRK type signal peptide Amir_0572 PF03527 RHS protein Amir_0572 PF05593 RHS Repeat Amir_0575 PF00293 NUDIX domain Amir_0575 PF13344 Haloacid dehalogenase-like hydrolase Amir_0576 PF03704 Bacterial transcriptional activator domain Amir_0576 PF00931 NB-ARC domain Amir_0576 PF00486 Transcriptional regulatory protein, C terminal Amir_0593 PF00266 Aminotransferase class-V Amir_0594 PF00271 Helicase conserved C-terminal domain Amir_0594 PF04851 Type III restriction enzyme, res subunit Amir_0595 PF01119 DNA mismatch repair protein, C-terminal domain Amir_0595 PF08676 MutL C terminal dimerisation domain Amir_0601 PF00196 Bacterial regulatory proteins, luxR family Amir_0601 PF00072 Response regulator receiver domain Amir_0602 PF00563 EAL domain Amir_0602 PF00990 Diguanylate cyclase, GGDEF domain Amir_0602 PF05231 MASE1 Amir_0602 PF13426 PAS domain Amir_0602 PF08448 PAS fold Amir_0602 PF08447 PAS fold Amir_0603 PF00881 Nitroreductase family Amir_0604 PF01084 Ribosomal protein S18 Amir_0605 PF00253 Ribosomal protein S14p/S29e Amir_0606 PF00471 Ribosomal protein L33 Amir_0607 PF00830 Ribosomal L28 family Amir_0608 PF00300 Histidine phosphatase superfamily (branch 1) Amir_0610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Amir_0610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amir_0612 PF00072 Response regulator receiver domain Amir_0612 PF00486 Transcriptional regulatory protein, C terminal Amir_0613 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_0613 PF00672 HAMP domain Amir_0613 PF00512 His Kinase A (phospho-acceptor) domain Amir_0617 PF08533 Beta-galactosidase C-terminal domain Amir_0617 PF08532 Beta-galactosidase trimerisation domain Amir_0617 PF02449 Beta-galactosidase Amir_0618 PF08220 DeoR-like helix-turn-helix domain Amir_0618 PF00455 DeoR C terminal sensor domain Amir_0619 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Amir_0619 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Amir_0620 PF13180 PDZ domain Amir_0622 PF00994 Probable molybdopterin binding domain Amir_0622 PF01967 MoaC family Amir_0624 PF01741 Large-conductance mechanosensitive channel, MscL Amir_0627 PF01812 5-formyltetrahydrofolate cyclo-ligase family Amir_0628 PF00483 Nucleotidyl transferase Amir_0629 PF03454 MoeA C-terminal region (domain IV) Amir_0629 PF03453 MoeA N-terminal region (domain I and II) Amir_0629 PF00994 Probable molybdopterin binding domain Amir_0630 PF13302 Acetyltransferase (GNAT) domain Amir_0634 PF00580 UvrD/REP helicase N-terminal domain Amir_0634 PF13361 UvrD-like helicase C-terminal domain Amir_0635 PF00069 Protein kinase domain Amir_0635 PF03793 PASTA domain Amir_0636 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Amir_0636 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase Amir_0637 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amir_0642 PF09334 tRNA synthetases class I (M) Amir_0642 PF08264 Anticodon-binding domain of tRNA Amir_0643 PF01026 TatD related DNase Amir_0644 PF03990 G5-linked-Ubiquitin-like domain Amir_0644 PF06737 Transglycosylase-like domain Amir_0644 PF07501 G5 domain Amir_0645 PF00398 Ribosomal RNA adenine dimethylase Amir_0646 PF09383 NIL domain Amir_0646 PF00005 ABC transporter Amir_0647 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0648 PF03180 NLPA lipoprotein Amir_0649 PF08544 GHMP kinases C terminal Amir_0649 PF00288 GHMP kinases N terminal domain Amir_0650 PF00005 ABC transporter Amir_0650 PF16326 ABC transporter C-terminal domain Amir_0650 PF12848 ABC transporter Amir_0651 PF05103 DivIVA protein Amir_0652 PF14535 AMP-binding enzyme C-terminal domain Amir_0652 PF00501 AMP-binding enzyme Amir_0653 PF01195 Peptidyl-tRNA hydrolase Amir_0655 PF01386 Ribosomal L25p family Amir_0655 PF14693 Ribosomal protein TL5, C-terminal domain Amir_0656 PF14572 Phosphoribosyl synthetase-associated domain Amir_0656 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Amir_0657 PF00132 Bacterial transferase hexapeptide (six repeats) Amir_0657 PF12804 MobA-like NTP transferase domain Amir_0658 PF00990 Diguanylate cyclase, GGDEF domain Amir_0658 PF00072 Response regulator receiver domain Amir_0661 PF00440 Bacterial regulatory proteins, tetR family Amir_0663 PF07995 Glucose / Sorbosone dehydrogenase Amir_0665 PF00271 Helicase conserved C-terminal domain Amir_0665 PF17757 UvrB interaction domain Amir_0665 PF00270 DEAD/DEAH box helicase Amir_0665 PF03461 TRCF domain Amir_0665 PF02559 CarD-like/TRCF domain Amir_0667 PF03819 MazG nucleotide pyrophosphohydrolase domain Amir_0668 PF07676 WD40-like Beta Propeller Repeat Amir_0668 PF03572 Peptidase family S41 Amir_0668 PF14684 Tricorn protease C1 domain Amir_0668 PF14685 Tricorn protease PDZ domain Amir_0671 PF00113 Enolase, C-terminal TIM barrel domain Amir_0671 PF03952 Enolase, N-terminal domain Amir_0675 PF02541 Ppx/GppA phosphatase family Amir_0676 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_0679 PF00005 ABC transporter Amir_0679 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_0680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_0680 PF00005 ABC transporter Amir_0682 PF03167 Uracil DNA glycosylase superfamily Amir_0685 PF17863 AAA lid domain Amir_0685 PF07726 ATPase family associated with various cellular activities (AAA) Amir_0699 PF00108 Thiolase, N-terminal domain Amir_0699 PF02803 Thiolase, C-terminal domain Amir_0700 PF00571 CBS domain Amir_0700 PF00291 Pyridoxal-phosphate dependent enzyme Amir_0701 PF06271 RDD family Amir_0702 PF01053 Cys/Met metabolism PLP-dependent enzyme Amir_0705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amir_0707 PF03449 Transcription elongation factor, N-terminal Amir_0707 PF01272 Transcription elongation factor, GreA/GreB, C-term Amir_0709 PF02585 GlcNAc-PI de-N-acetylase Amir_0712 PF03190 Protein of unknown function, DUF255 Amir_0713 PF03006 Haemolysin-III related Amir_0714 PF01255 Putative undecaprenyl diphosphate synthase Amir_0717 PF02562 PhoH-like protein Amir_0717 PF13638 PIN domain Amir_0718 PF00478 IMP dehydrogenase / GMP reductase domain Amir_0718 PF00571 CBS domain Amir_0719 PF04675 DNA ligase N terminus Amir_0719 PF04679 ATP dependent DNA ligase C terminal region Amir_0719 PF01068 ATP dependent DNA ligase domain Amir_0720 PF00206 Lyase Amir_0720 PF10415 Fumarase C C-terminus Amir_0721 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_0724 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Amir_0725 PF02609 Exonuclease VII small subunit Amir_0727 PF02601 Exonuclease VII, large subunit Amir_0727 PF13742 OB-fold nucleic acid binding domain Amir_0729 PF02401 LytB protein Amir_0732 PF12320 Type 5 capsule protein repressor C-terminal domain Amir_0732 PF00149 Calcineurin-like phosphoesterase Amir_0733 PF13476 AAA domain Amir_0735 PF06029 AlkA N-terminal domain Amir_0735 PF02805 Metal binding domain of Ada Amir_0735 PF00730 HhH-GPD superfamily base excision DNA repair protein Amir_0735 PF12833 Helix-turn-helix domain Amir_0736 PF06071 Protein of unknown function (DUF933) Amir_0736 PF01926 50S ribosome-binding GTPase Amir_0743 PF09594 Glycosyltransferase family 87 Amir_0745 PF01329 Pterin 4 alpha carbinolamine dehydratase Amir_0747 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0748 PF00005 ABC transporter Amir_0748 PF08402 TOBE domain Amir_0751 PF00005 ABC transporter Amir_0753 PF00072 Response regulator receiver domain Amir_0753 PF00486 Transcriptional regulatory protein, C terminal Amir_0754 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_0754 PF00512 His Kinase A (phospho-acceptor) domain Amir_0754 PF00672 HAMP domain Amir_0755 PF00293 NUDIX domain Amir_0756 PF00579 tRNA synthetases class I (W and Y) Amir_0760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_0761 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_0762 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0763 PF12911 N-terminal TM domain of oligopeptide transport permease C Amir_0763 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0764 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_0764 PF00005 ABC transporter Amir_0765 PF00005 ABC transporter Amir_0765 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_0766 PF02585 GlcNAc-PI de-N-acetylase Amir_0770 PF00037 4Fe-4S binding domain Amir_0771 PF00155 Aminotransferase class I and II Amir_0772 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle Amir_0772 PF14602 Hexapeptide repeat of succinyl-transferase Amir_0773 PF01546 Peptidase family M20/M25/M40 Amir_0773 PF07687 Peptidase dimerisation domain Amir_0774 PF03641 Possible lysine decarboxylase Amir_0775 PF03641 Possible lysine decarboxylase Amir_0777 PF00809 Pterin binding enzyme Amir_0781 PF13673 Acetyltransferase (GNAT) domain Amir_0781 PF13302 Acetyltransferase (GNAT) domain Amir_0781 PF03352 Methyladenine glycosylase Amir_0781 PF00117 Glutamine amidotransferase class-I Amir_0781 PF00958 GMP synthase C terminal domain Amir_0783 PF08659 KR domain Amir_0783 PF00698 Acyl transferase domain Amir_0783 PF08240 Alcohol dehydrogenase GroES-like domain Amir_0783 PF08990 Erythronolide synthase docking Amir_0783 PF09277 Erythronolide synthase, docking Amir_0783 PF16197 Ketoacyl-synthetase C-terminal extension Amir_0783 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_0783 PF00550 Phosphopantetheine attachment site Amir_0783 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_0783 PF14765 Polyketide synthase dehydratase Amir_0786 PF00378 Enoyl-CoA hydratase/isomerase Amir_0787 PF07848 PaaX-like protein Amir_0787 PF08223 PaaX-like protein C-terminal domain Amir_0789 PF00883 Cytosol aminopeptidase family, catalytic domain Amir_0789 PF02789 Cytosol aminopeptidase family, N-terminal domain Amir_0790 PF03466 LysR substrate binding domain Amir_0790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_0791 PF07690 Major Facilitator Superfamily Amir_0793 PF13439 Glycosyltransferase Family 4 Amir_0793 PF00534 Glycosyl transferases group 1 Amir_0794 PF00483 Nucleotidyl transferase Amir_0795 PF04542 Sigma-70 region 2 Amir_0795 PF08281 Sigma-70, region 4 Amir_0797 PF00595 PDZ domain Amir_0798 PF02416 mttA/Hcf106 family Amir_0799 PF01883 Iron-sulfur cluster assembly protein Amir_0799 PF10609 NUBPL iron-transfer P-loop NTPase Amir_0802 PF03448 MgtE intracellular N domain Amir_0802 PF01769 Divalent cation transporter Amir_0802 PF00571 CBS domain Amir_0803 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Amir_0805 PF03328 HpcH/HpaI aldolase/citrate lyase family Amir_0807 PF01547 Bacterial extracellular solute-binding protein Amir_0808 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0809 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0810 PF00005 ABC transporter Amir_0810 PF17912 MalK OB fold domain Amir_0816 PF01544 CorA-like Mg2+ transporter protein Amir_0824 PF00270 DEAD/DEAH box helicase Amir_0824 PF00271 Helicase conserved C-terminal domain Amir_0833 PF00581 Rhodanese-like domain Amir_0833 PF00899 ThiF family Amir_0835 PF01568 Molydopterin dinucleotide binding domain Amir_0835 PF00384 Molybdopterin oxidoreductase Amir_0835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Amir_0836 PF04324 BFD-like [2Fe-2S] binding domain Amir_0836 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Amir_0836 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Amir_0836 PF18267 Rubredoxin NAD+ reductase C-terminal domain Amir_0836 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_0837 PF07690 Major Facilitator Superfamily Amir_0838 PF13806 Rieske-like [2Fe-2S] domain Amir_0838 PF04324 BFD-like [2Fe-2S] binding domain Amir_0838 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Amir_0838 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Amir_0838 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_0838 PF18267 Rubredoxin NAD+ reductase C-terminal domain Amir_0839 PF04324 BFD-like [2Fe-2S] binding domain Amir_0839 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Amir_0839 PF13806 Rieske-like [2Fe-2S] domain Amir_0839 PF18267 Rubredoxin NAD+ reductase C-terminal domain Amir_0839 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_0839 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Amir_0844 PF00486 Transcriptional regulatory protein, C terminal Amir_0844 PF00072 Response regulator receiver domain Amir_0845 PF00512 His Kinase A (phospho-acceptor) domain Amir_0845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_0845 PF00672 HAMP domain Amir_0851 PF13361 UvrD-like helicase C-terminal domain Amir_0851 PF00580 UvrD/REP helicase N-terminal domain Amir_0852 PF13361 UvrD-like helicase C-terminal domain Amir_0852 PF00580 UvrD/REP helicase N-terminal domain Amir_0856 PF03466 LysR substrate binding domain Amir_0856 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_0857 PF04228 Putative neutral zinc metallopeptidase Amir_0858 PF04228 Putative neutral zinc metallopeptidase Amir_0860 PF00216 Bacterial DNA-binding protein Amir_0862 PF00561 alpha/beta hydrolase fold Amir_0864 PF05193 Peptidase M16 inactive domain Amir_0864 PF00675 Insulinase (Peptidase family M16) Amir_0865 PF00293 NUDIX domain Amir_0865 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Amir_0865 PF09297 NADH pyrophosphatase zinc ribbon domain Amir_0866 PF00480 ROK family Amir_0867 PF00440 Bacterial regulatory proteins, tetR family Amir_0867 PF16859 Tetracyclin repressor-like, C-terminal domain Amir_0868 PF01979 Amidohydrolase family Amir_0872 PF03186 CobD/Cbib protein Amir_0873 PF02104 SURF1 family Amir_0875 PF01451 Low molecular weight phosphotyrosine protein phosphatase Amir_0878 PF00155 Aminotransferase class I and II Amir_0879 PF01784 NIF3 (NGG1p interacting factor 3) Amir_0881 PF00300 Histidine phosphatase superfamily (branch 1) Amir_0881 PF13456 Reverse transcriptase-like Amir_0882 PF03358 NADPH-dependent FMN reductase Amir_0889 PF00877 NlpC/P60 family Amir_0893 PF01497 Periplasmic binding protein Amir_0894 PF00561 alpha/beta hydrolase fold Amir_0899 PF08402 TOBE domain Amir_0899 PF00005 ABC transporter Amir_0904 PF02548 Ketopantoate hydroxymethyltransferase Amir_0906 PF01336 OB-fold nucleic acid binding domain Amir_0906 PF00152 tRNA synthetases class II (D, K and N) Amir_0906 PF09924 Uncharacterised conserved protein (DUF2156) Amir_0906 PF16995 Transmembrane region of lysyl-tRNA synthetase Amir_0907 PF00561 alpha/beta hydrolase fold Amir_0908 PF00795 Carbon-nitrogen hydrolase Amir_0908 PF02540 NAD synthase Amir_0909 PF03951 Glutamine synthetase, beta-Grasp domain Amir_0909 PF00120 Glutamine synthetase, catalytic domain Amir_0911 PF01384 Phosphate transporter family Amir_0913 PF03710 Glutamate-ammonia ligase adenylyltransferase Amir_0913 PF08335 GlnD PII-uridylyltransferase Amir_0917 PF00392 Bacterial regulatory proteins, gntR family Amir_0917 PF07702 UTRA domain Amir_0925 PF00120 Glutamine synthetase, catalytic domain Amir_0925 PF03951 Glutamine synthetase, beta-Grasp domain Amir_0927 PF13829 Domain of unknown function (DUF4191) Amir_0928 PF00580 UvrD/REP helicase N-terminal domain Amir_0928 PF13361 UvrD-like helicase C-terminal domain Amir_0928 PF00570 HRDC domain Amir_0929 PF02467 Transcription factor WhiB Amir_0929 PF02178 AT hook motif Amir_0934 PF03109 ABC1 family Amir_0941 PF03699 Uncharacterised protein family (UPF0182) Amir_0944 PF03462 PCRF domain Amir_0944 PF00472 RF-1 domain Amir_0945 PF00005 ABC transporter Amir_0946 PF02687 FtsX-like permease family Amir_0946 PF18075 FtsX extracellular domain Amir_0947 PF01668 SmpB protein Amir_0948 PF00072 Response regulator receiver domain Amir_0948 PF00196 Bacterial regulatory proteins, luxR family Amir_0949 PF07730 Histidine kinase Amir_0949 PF00672 HAMP domain Amir_0949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_0951 PF04408 Helicase associated domain (HA2) Amir_0951 PF00270 DEAD/DEAH box helicase Amir_0951 PF00271 Helicase conserved C-terminal domain Amir_0951 PF08482 ATP-dependent helicase C-terminal Amir_0952 PF00535 Glycosyl transferase family 2 Amir_0953 PF00583 Acetyltransferase (GNAT) family Amir_0954 PF07690 Major Facilitator Superfamily Amir_0956 PF00501 AMP-binding enzyme Amir_0956 PF14535 AMP-binding enzyme C-terminal domain Amir_0957 PF00069 Protein kinase domain Amir_0957 PF03793 PASTA domain Amir_0959 PF01420 Type I restriction modification DNA specificity domain Amir_0971 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0972 PF00528 Binding-protein-dependent transport system inner membrane component Amir_0975 PF00356 Bacterial regulatory proteins, lacI family Amir_0976 PF00486 Transcriptional regulatory protein, C terminal Amir_0976 PF00931 NB-ARC domain Amir_0976 PF03704 Bacterial transcriptional activator domain Amir_0983 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_0983 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Amir_0983 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_0984 PF01008 Initiation factor 2 subunit family Amir_0986 PF00596 Class II Aldolase and Adducin N-terminal domain Amir_0987 PF03079 ARD/ARD' family Amir_0989 PF00115 Cytochrome C and Quinol oxidase polypeptide I Amir_0994 PF13091 PLD-like domain Amir_0995 PF13307 Helicase C-terminal domain Amir_1001 PF02350 UDP-N-acetylglucosamine 2-epimerase Amir_1003 PF00857 Isochorismatase family Amir_1004 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Amir_1004 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Amir_1005 PF02617 ATP-dependent Clp protease adaptor protein ClpS Amir_1006 PF09438 Domain of unknown function (DUF2017) Amir_1009 PF14464 Prokaryotic homologs of the JAB domain Amir_1010 PF02597 ThiS family Amir_1011 PF00291 Pyridoxal-phosphate dependent enzyme Amir_1012 PF12706 Beta-lactamase superfamily domain Amir_1013 PF08450 SMP-30/Gluconolactonase/LRE-like region Amir_1014 PF01694 Rhomboid family Amir_1015 PF01177 Asp/Glu/Hydantoin racemase Amir_1016 PF12706 Beta-lactamase superfamily domain Amir_1020 PF03725 3' exoribonuclease family, domain 2 Amir_1020 PF01138 3' exoribonuclease family, domain 1 Amir_1021 PF01725 Ham1 family Amir_1023 PF00578 AhpC/TSA family Amir_1025 PF00296 Luciferase-like monooxygenase Amir_1027 PF09335 SNARE associated Golgi protein Amir_1028 PF02492 CobW/HypB/UreG, nucleotide-binding domain Amir_1028 PF07683 Cobalamin synthesis protein cobW C-terminal domain Amir_1030 PF16859 Tetracyclin repressor-like, C-terminal domain Amir_1030 PF00440 Bacterial regulatory proteins, tetR family Amir_1032 PF13823 Alcohol dehydrogenase GroES-associated Amir_1032 PF00107 Zinc-binding dehydrogenase Amir_1032 PF08240 Alcohol dehydrogenase GroES-like domain Amir_1033 PF07685 CobB/CobQ-like glutamine amidotransferase domain Amir_1034 PF08245 Mur ligase middle domain Amir_1034 PF08353 Domain of unknown function (DUF1727) Amir_1036 PF02698 DUF218 domain Amir_1037 PF13399 LytR cell envelope-related transcriptional attenuator Amir_1037 PF03816 Cell envelope-related transcriptional attenuator domain Amir_1038 PF02092 Glycyl-tRNA synthetase beta subunit Amir_1038 PF02091 Glycyl-tRNA synthetase alpha subunit Amir_1039 PF00082 Subtilase family Amir_1040 PF13407 Periplasmic binding protein domain Amir_1042 PF00313 'Cold-shock' DNA-binding domain Amir_1044 PF17801 Alpha galactosidase C-terminal beta sandwich domain Amir_1044 PF16499 Alpha galactosidase A Amir_1046 PF04434 SWIM zinc finger Amir_1047 PF12419 SNF2 Helicase protein Amir_1047 PF00271 Helicase conserved C-terminal domain Amir_1047 PF00176 SNF2 family N-terminal domain Amir_1050 PF00145 C-5 cytosine-specific DNA methylase Amir_1054 PF17964 Bacterial Ig domain Amir_1054 PF03734 L,D-transpeptidase catalytic domain Amir_1055 PF00005 ABC transporter Amir_1055 PF16326 ABC transporter C-terminal domain Amir_1055 PF12848 ABC transporter Amir_1056 PF00929 Exonuclease Amir_1058 PF01965 DJ-1/PfpI family Amir_1060 PF00294 pfkB family carbohydrate kinase Amir_1062 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Amir_1066 PF13193 AMP-binding enzyme C-terminal domain Amir_1066 PF00501 AMP-binding enzyme Amir_1068 PF01047 MarR family Amir_1069 PF02525 Flavodoxin-like fold Amir_1073 PF07549 SecD/SecF GG Motif Amir_1073 PF02355 Protein export membrane protein Amir_1074 PF01070 FMN-dependent dehydrogenase Amir_1076 PF12833 Helix-turn-helix domain Amir_1080 PF13649 Methyltransferase domain Amir_1081 PF01619 Proline dehydrogenase Amir_1082 PF00171 Aldehyde dehydrogenase family Amir_1083 PF13556 PucR C-terminal helix-turn-helix domain Amir_1083 PF17853 GGDEF-like domain Amir_1084 PF14849 YidC periplasmic domain Amir_1084 PF02096 60Kd inner membrane protein Amir_1089 PF00171 Aldehyde dehydrogenase family Amir_1091 PF02838 Glycosyl hydrolase family 20, domain 2 Amir_1091 PF00728 Glycosyl hydrolase family 20, catalytic domain Amir_1092 PF01928 CYTH domain Amir_1092 PF05235 CHAD domain Amir_1095 PF00551 Formyl transferase Amir_1095 PF02911 Formyl transferase, C-terminal domain Amir_1095 PF01370 NAD dependent epimerase/dehydratase family Amir_1096 PF07969 Amidohydrolase family Amir_1098 PF00574 Clp protease Amir_1099 PF00574 Clp protease Amir_1101 PF13784 Fic/DOC family N-terminal Amir_1101 PF02661 Fic/DOC family Amir_1119 PF00356 Bacterial regulatory proteins, lacI family Amir_1120 PF07690 Major Facilitator Superfamily Amir_1122 PF05425 Copper resistance protein D Amir_1122 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Amir_1124 PF13732 Domain of unknown function (DUF4162) Amir_1124 PF00005 ABC transporter Amir_1127 PF00005 ABC transporter Amir_1127 PF12848 ABC transporter Amir_1129 PF05088 Bacterial NAD-glutamate dehydrogenase Amir_1130 PF00686 Starch binding domain Amir_1130 PF00128 Alpha amylase, catalytic domain Amir_1130 PF02806 Alpha amylase, C-terminal all-beta domain Amir_1131 PF00356 Bacterial regulatory proteins, lacI family Amir_1134 PF00128 Alpha amylase, catalytic domain Amir_1135 PF01152 Bacterial-like globin Amir_1136 PF00924 Mechanosensitive ion channel Amir_1137 PF00326 Prolyl oligopeptidase family Amir_1137 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Amir_1141 PF17174 Domain of unknown function (DUF5130) Amir_1142 PF11838 ERAP1-like C-terminal domain Amir_1142 PF01433 Peptidase family M1 domain Amir_1143 PF01323 DSBA-like thioredoxin domain Amir_1145 PF02502 Ribose/Galactose Isomerase Amir_1147 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Amir_1147 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Amir_1147 PF06827 Zinc finger found in FPG and IleRS Amir_1149 PF13530 Sterol carrier protein domain Amir_1149 PF17668 Acetyltransferase (GNAT) domain Amir_1151 PF03466 LysR substrate binding domain Amir_1151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_1152 PF05697 Bacterial trigger factor protein (TF) Amir_1152 PF05698 Bacterial trigger factor protein (TF) C-terminus Amir_1152 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Amir_1153 PF00574 Clp protease Amir_1154 PF10431 C-terminal, D2-small domain, of ClpB protein Amir_1154 PF07724 AAA domain (Cdc48 subfamily) Amir_1154 PF06689 ClpX C4-type zinc finger Amir_1157 PF02634 FdhD/NarQ family Amir_1162 PF01568 Molydopterin dinucleotide binding domain Amir_1162 PF00384 Molybdopterin oxidoreductase Amir_1165 PF08264 Anticodon-binding domain of tRNA Amir_1165 PF10458 Valyl tRNA synthetase tRNA binding arm Amir_1165 PF00133 tRNA synthetases class I (I, L, M and V) Amir_1166 PF08245 Mur ligase middle domain Amir_1166 PF02875 Mur ligase family, glutamate ligase domain Amir_1170 PF03714 Bacterial pullanase-associated domain Amir_1170 PF02806 Alpha amylase, C-terminal all-beta domain Amir_1170 PF00128 Alpha amylase, catalytic domain Amir_1172 PF00334 Nucleoside diphosphate kinase Amir_1173 PF00005 ABC transporter Amir_1175 PF01061 ABC-2 type transporter Amir_1177 PF04542 Sigma-70 region 2 Amir_1177 PF04545 Sigma-70, region 4 Amir_1178 PF00196 Bacterial regulatory proteins, luxR family Amir_1178 PF00072 Response regulator receiver domain Amir_1186 PF10150 Ribonuclease E/G family Amir_1186 PF10150 Ribonuclease E/G family Amir_1187 PF00829 Ribosomal prokaryotic L21 protein Amir_1188 PF01016 Ribosomal L27 protein Amir_1189 PF09269 Domain of unknown function (DUF1967) Amir_1189 PF01926 50S ribosome-binding GTPase Amir_1189 PF01018 GTP1/OBG Amir_1190 PF01472 PUA domain Amir_1190 PF00696 Amino acid kinase family Amir_1191 PF00083 Sugar (and other) transporter Amir_1192 PF13302 Acetyltransferase (GNAT) domain Amir_1193 PF00270 DEAD/DEAH box helicase Amir_1193 PF00271 Helicase conserved C-terminal domain Amir_1193 PF00570 HRDC domain Amir_1193 PF09382 RQC domain Amir_1193 PF16124 RecQ zinc-binding Amir_1194 PF00171 Aldehyde dehydrogenase family Amir_1195 PF00067 Cytochrome P450 Amir_1197 PF01467 Cytidylyltransferase-like Amir_1199 PF00300 Histidine phosphatase superfamily (branch 1) Amir_1200 PF13472 GDSL-like Lipase/Acylhydrolase family Amir_1201 PF02645 Uncharacterised protein, DegV family COG1307 Amir_1202 PF10531 SLBB domain Amir_1203 PF16123 Hydroxyacylglutathione hydrolase C-terminus Amir_1203 PF00753 Metallo-beta-lactamase superfamily Amir_1205 PF00291 Pyridoxal-phosphate dependent enzyme Amir_1207 PF01649 Ribosomal protein S20 Amir_1208 PF01925 Sulfite exporter TauE/SafE Amir_1213 PF04174 A circularly permuted ATPgrasp Amir_1215 PF01841 Transglutaminase-like superfamily Amir_1215 PF08379 Bacterial transglutaminase-like N-terminal region Amir_1216 PF06421 GTP-binding protein LepA C-terminus Amir_1216 PF00009 Elongation factor Tu GTP binding domain Amir_1216 PF00679 Elongation factor G C-terminus Amir_1216 PF03144 Elongation factor Tu domain 2 Amir_1219 PF04607 Region found in RelA / SpoT proteins Amir_1219 PF13291 ACT domain Amir_1219 PF02824 TGS domain Amir_1220 PF00041 Fibronectin type III domain Amir_1220 PF00704 Glycosyl hydrolases family 18 Amir_1220 PF02018 Carbohydrate binding domain Amir_1221 PF03060 Nitronate monooxygenase Amir_1223 PF13520 Amino acid permease Amir_1225 PF08240 Alcohol dehydrogenase GroES-like domain Amir_1225 PF00107 Zinc-binding dehydrogenase Amir_1227 PF00545 ribonuclease Amir_1228 PF01337 Barstar (barnase inhibitor) Amir_1232 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1233 PF00005 ABC transporter Amir_1235 PF00009 Elongation factor Tu GTP binding domain Amir_1236 PF01507 Phosphoadenosine phosphosulfate reductase family Amir_1237 PF01507 Phosphoadenosine phosphosulfate reductase family Amir_1239 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Amir_1239 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Amir_1240 PF04055 Radical SAM superfamily Amir_1241 PF01628 HrcA protein C terminal domain Amir_1242 PF00684 DnaJ central domain Amir_1242 PF01556 DnaJ C terminal domain Amir_1242 PF00226 DnaJ domain Amir_1243 PF04452 RNA methyltransferase Amir_1246 PF12697 Alpha/beta hydrolase family Amir_1247 PF01230 HIT domain Amir_1249 PF02562 PhoH-like protein Amir_1250 PF02130 Uncharacterized protein family UPF0054 Amir_1251 PF03471 Transporter associated domain Amir_1251 PF00571 CBS domain Amir_1251 PF01595 Cyclin M transmembrane N-terminal domain Amir_1254 PF07650 KH domain Amir_1254 PF01926 50S ribosome-binding GTPase Amir_1255 PF02565 Recombination protein O C terminal Amir_1255 PF11967 Recombination protein O N terminal Amir_1256 PF01255 Putative undecaprenyl diphosphate synthase Amir_1259 PF03773 Predicted permease Amir_1261 PF01475 Ferric uptake regulator family Amir_1262 PF01022 Bacterial regulatory protein, arsR family Amir_1266 PF03129 Anticodon binding domain Amir_1266 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Amir_1268 PF00484 Carbonic anhydrase Amir_1271 PF13286 Phosphohydrolase-associated domain Amir_1271 PF01966 HD domain Amir_1273 PF03575 Peptidase family S51 Amir_1274 PF08281 Sigma-70, region 4 Amir_1274 PF12680 SnoaL-like domain Amir_1274 PF04542 Sigma-70 region 2 Amir_1275 PF01807 CHC2 zinc finger Amir_1275 PF08275 DNA primase catalytic core, N-terminal domain Amir_1275 PF13662 Toprim domain Amir_1275 PF08278 DNA primase DnaG DnaB-binding Amir_1275 PF10410 DnaB-helicase binding domain of primase Amir_1279 PF02698 DUF218 domain Amir_1280 PF00392 Bacterial regulatory proteins, gntR family Amir_1280 PF07702 UTRA domain Amir_1282 PF00293 NUDIX domain Amir_1284 PF07729 FCD domain Amir_1284 PF00392 Bacterial regulatory proteins, gntR family Amir_1294 PF00589 Phage integrase family Amir_1299 PF03816 Cell envelope-related transcriptional attenuator domain Amir_1299 PF13399 LytR cell envelope-related transcriptional attenuator Amir_1301 PF01522 Polysaccharide deacetylase Amir_1302 PF00067 Cytochrome P450 Amir_1303 PF02898 Nitric oxide synthase, oxygenase domain Amir_1304 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Amir_1304 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Amir_1306 PF08447 PAS fold Amir_1306 PF00990 Diguanylate cyclase, GGDEF domain Amir_1306 PF00563 EAL domain Amir_1306 PF08448 PAS fold Amir_1309 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Amir_1310 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Amir_1312 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Amir_1312 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Amir_1315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Amir_1315 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_1319 PF00005 ABC transporter Amir_1320 PF00005 ABC transporter Amir_1320 PF00664 ABC transporter transmembrane region Amir_1322 PF00069 Protein kinase domain Amir_1324 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_1324 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_1325 PF00550 Phosphopantetheine attachment site Amir_1326 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Amir_1326 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Amir_1327 PF00698 Acyl transferase domain Amir_1328 PF13556 PucR C-terminal helix-turn-helix domain Amir_1328 PF17853 GGDEF-like domain Amir_1330 PF04973 Nicotinamide mononucleotide transporter Amir_1331 PF01547 Bacterial extracellular solute-binding protein Amir_1333 PF00456 Transketolase, thiamine diphosphate binding domain Amir_1333 PF17831 Pyruvate dehydrogenase E1 component middle domain Amir_1335 PF11253 Protein of unknown function (DUF3052) Amir_1336 PF00578 AhpC/TSA family Amir_1340 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Amir_1340 PF04055 Radical SAM superfamily Amir_1341 PF00106 short chain dehydrogenase Amir_1344 PF03099 Biotin/lipoate A/B protein ligase family Amir_1347 PF01370 NAD dependent epimerase/dehydratase family Amir_1349 PF01370 NAD dependent epimerase/dehydratase family Amir_1349 PF08338 Domain of unknown function (DUF1731) Amir_1350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Amir_1350 PF00364 Biotin-requiring enzyme Amir_1350 PF02817 e3 binding domain Amir_1351 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_1351 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Amir_1354 PF02789 Cytosol aminopeptidase family, N-terminal domain Amir_1354 PF00883 Cytosol aminopeptidase family, catalytic domain Amir_1356 PF01063 Amino-transferase class IV Amir_1357 PF02654 Cobalamin-5-phosphate synthase Amir_1358 PF02277 Phosphoribosyltransferase Amir_1359 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Amir_1360 PF00248 Aldo/keto reductase family Amir_1363 PF11241 Protein of unknown function (DUF3043) Amir_1364 PF01521 Iron-sulphur cluster biosynthesis Amir_1366 PF13537 Glutamine amidotransferase domain Amir_1366 PF00733 Asparagine synthase Amir_1367 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Amir_1368 PF12270 Cytochrome c oxidase subunit IV Amir_1369 PF13193 AMP-binding enzyme C-terminal domain Amir_1369 PF00501 AMP-binding enzyme Amir_1369 PF01553 Acyltransferase Amir_1370 PF00591 Glycosyl transferase family, a/b domain Amir_1370 PF02885 Glycosyl transferase family, helical bundle domain Amir_1373 PF00510 Cytochrome c oxidase subunit III Amir_1374 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Amir_1374 PF00034 Cytochrome c Amir_1375 PF00355 Rieske [2Fe-2S] domain Amir_1376 PF13631 Cytochrome b(N-terminal)/b6/petB Amir_1378 PF01541 GIY-YIG catalytic domain Amir_1378 PF00929 Exonuclease Amir_1380 PF00877 NlpC/P60 family Amir_1382 PF13439 Glycosyltransferase Family 4 Amir_1382 PF00534 Glycosyl transferases group 1 Amir_1383 PF00501 AMP-binding enzyme Amir_1387 PF17886 HSP20-like domain found in ArsA Amir_1387 PF02374 Anion-transporting ATPase Amir_1389 PF00480 ROK family Amir_1392 PF01553 Acyltransferase Amir_1393 PF16473 3' exoribonuclease, RNase T-like Amir_1394 PF00365 Phosphofructokinase Amir_1395 PF01474 Class-II DAHP synthetase family Amir_1396 PF00069 Protein kinase domain Amir_1397 PF18367 Rv2175c C-terminal domain of unknown function Amir_1399 PF01593 Flavin containing amine oxidoreductase Amir_1401 PF02219 Methylenetetrahydrofolate reductase Amir_1402 PF02627 Carboxymuconolactone decarboxylase family Amir_1407 PF03129 Anticodon binding domain Amir_1407 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Amir_1407 PF04073 Aminoacyl-tRNA editing domain Amir_1411 PF07729 FCD domain Amir_1411 PF00392 Bacterial regulatory proteins, gntR family Amir_1412 PF00291 Pyridoxal-phosphate dependent enzyme Amir_1413 PF00271 Helicase conserved C-terminal domain Amir_1413 PF08494 DEAD/H associated Amir_1413 PF00270 DEAD/DEAH box helicase Amir_1415 PF00012 Hsp70 protein Amir_1416 PF07690 Major Facilitator Superfamily Amir_1416 PF00083 Sugar (and other) transporter Amir_1419 PF00154 recA bacterial DNA recombination protein Amir_1420 PF02631 RecX family Amir_1422 PF01081 KDPG and KHG aldolase Amir_1423 PF00920 Dehydratase family Amir_1426 PF00890 FAD binding domain Amir_1426 PF02910 Fumarate reductase flavoprotein C-term Amir_1427 PF13183 4Fe-4S dicluster domain Amir_1427 PF13085 2Fe-2S iron-sulfur cluster binding domain Amir_1432 PF03477 ATP cone domain Amir_1434 PF01726 LexA DNA binding domain Amir_1434 PF00717 Peptidase S24-like Amir_1436 PF16360 GTP-binding GTPase Middle Region Amir_1436 PF13167 GTP-binding GTPase N-terminal Amir_1436 PF01926 50S ribosome-binding GTPase Amir_1439 PF01678 Diaminopimelate epimerase Amir_1442 PF03993 Domain of Unknown Function (DUF349) Amir_1444 PF04055 Radical SAM superfamily Amir_1444 PF00919 Uncharacterized protein family UPF0004 Amir_1445 PF16868 NMT1-like family Amir_1446 PF08521 Two-component sensor kinase N-terminal Amir_1446 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_1446 PF00512 His Kinase A (phospho-acceptor) domain Amir_1447 PF00486 Transcriptional regulatory protein, C terminal Amir_1447 PF00072 Response regulator receiver domain Amir_1448 PF00005 ABC transporter Amir_1449 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amir_1450 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1451 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1457 PF04493 Endonuclease V Amir_1458 PF02056 Family 4 glycosyl hydrolase Amir_1458 PF11975 Family 4 glycosyl hydrolase C-terminal domain Amir_1459 PF00962 Adenosine/AMP deaminase Amir_1460 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Amir_1460 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Amir_1462 PF07676 WD40-like Beta Propeller Repeat Amir_1462 PF00326 Prolyl oligopeptidase family Amir_1463 PF01370 NAD dependent epimerase/dehydratase family Amir_1464 PF08544 GHMP kinases C terminal Amir_1464 PF00288 GHMP kinases N terminal domain Amir_1464 PF10509 Galactokinase galactose-binding signature Amir_1465 PF02742 Iron dependent repressor, metal binding and dimerisation domain Amir_1465 PF01325 Iron dependent repressor, N-terminal DNA binding domain Amir_1465 PF18357 Diphteria toxin repressor SH3 domain Amir_1466 PF00581 Rhodanese-like domain Amir_1468 PF00850 Histone deacetylase domain Amir_1470 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amir_1471 PF00392 Bacterial regulatory proteins, gntR family Amir_1471 PF07702 UTRA domain Amir_1475 PF01139 tRNA-splicing ligase RtcB Amir_1476 PF01061 ABC-2 type transporter Amir_1477 PF00005 ABC transporter Amir_1477 PF13732 Domain of unknown function (DUF4162) Amir_1484 PF00171 Aldehyde dehydrogenase family Amir_1485 PF01370 NAD dependent epimerase/dehydratase family Amir_1487 PF00701 Dihydrodipicolinate synthetase family Amir_1488 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amir_1488 PF13378 Enolase C-terminal domain-like Amir_1492 PF05683 Fumarase C-terminus Amir_1492 PF05681 Fumarate hydratase (Fumerase) Amir_1493 PF04545 Sigma-70, region 4 Amir_1493 PF04539 Sigma-70 region 3 Amir_1493 PF04542 Sigma-70 region 2 Amir_1493 PF00140 Sigma-70 factor, region 1.2 Amir_1494 PF02580 D-Tyr-tRNA(Tyr) deacylase Amir_1495 PF17827 PrmC N-terminal domain Amir_1495 PF05175 Methyltransferase small domain Amir_1498 PF00294 pfkB family carbohydrate kinase Amir_1499 PF04227 Indigoidine synthase A like protein Amir_1502 PF04851 Type III restriction enzyme, res subunit Amir_1503 PF13407 Periplasmic binding protein domain Amir_1504 PF00005 ABC transporter Amir_1505 PF02653 Branched-chain amino acid transport system / permease component Amir_1506 PF01047 MarR family Amir_1506 PF00480 ROK family Amir_1509 PF04545 Sigma-70, region 4 Amir_1509 PF04539 Sigma-70 region 3 Amir_1509 PF04542 Sigma-70 region 2 Amir_1509 PF00140 Sigma-70 factor, region 1.2 Amir_1510 PF00480 ROK family Amir_1511 PF00459 Inositol monophosphatase family Amir_1515 PF00692 dUTPase Amir_1520 PF02254 TrkA-N domain Amir_1520 PF02080 TrkA-C domain Amir_1521 PF02254 TrkA-N domain Amir_1521 PF02080 TrkA-C domain Amir_1522 PF13520 Amino acid permease Amir_1523 PF01938 TRAM domain Amir_1523 PF05958 tRNA (Uracil-5-)-methyltransferase Amir_1524 PF02780 Transketolase, C-terminal domain Amir_1524 PF02779 Transketolase, pyrimidine binding domain Amir_1524 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Amir_1526 PF00072 Response regulator receiver domain Amir_1526 PF00486 Transcriptional regulatory protein, C terminal Amir_1527 PF00512 His Kinase A (phospho-acceptor) domain Amir_1527 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_1527 PF00672 HAMP domain Amir_1543 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Amir_1543 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amir_1543 PF00378 Enoyl-CoA hydratase/isomerase Amir_1548 PF01612 3'-5' exonuclease Amir_1548 PF00570 HRDC domain Amir_1549 PF00072 Response regulator receiver domain Amir_1549 PF00196 Bacterial regulatory proteins, luxR family Amir_1552 PF01208 Uroporphyrinogen decarboxylase (URO-D) Amir_1555 PF00082 Subtilase family Amir_1555 PF05922 Peptidase inhibitor I9 Amir_1559 PF05114 Protein of unknown function (DUF692) Amir_1565 PF01641 SelR domain Amir_1568 PF00392 Bacterial regulatory proteins, gntR family Amir_1568 PF07729 FCD domain Amir_1569 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_1569 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_1569 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_1570 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_1570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_1570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_1571 PF13298 DNA polymerase Ligase (LigD) Amir_1571 PF01068 ATP dependent DNA ligase domain Amir_1571 PF04679 ATP dependent DNA ligase C terminal region Amir_1578 PF00892 EamA-like transporter family Amir_1579 PF01068 ATP dependent DNA ligase domain Amir_1579 PF04679 ATP dependent DNA ligase C terminal region Amir_1583 PF00005 ABC transporter Amir_1583 PF12848 ABC transporter Amir_1584 PF13472 GDSL-like Lipase/Acylhydrolase family Amir_1585 PF10282 Lactonase, 7-bladed beta-propeller Amir_1586 PF00202 Aminotransferase class-III Amir_1591 PF03816 Cell envelope-related transcriptional attenuator domain Amir_1593 PF01569 PAP2 superfamily Amir_1595 PF01043 SecA preprotein cross-linking domain Amir_1595 PF07517 SecA DEAD-like domain Amir_1595 PF07516 SecA Wing and Scaffold domain Amir_1598 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_1598 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_1598 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_1603 PF00440 Bacterial regulatory proteins, tetR family Amir_1603 PF17922 Tetracyclin repressor-like, C-terminal domain Amir_1609 PF00107 Zinc-binding dehydrogenase Amir_1609 PF08240 Alcohol dehydrogenase GroES-like domain Amir_1612 PF00999 Sodium/hydrogen exchanger family Amir_1614 PF02224 Cytidylate kinase Amir_1616 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Amir_1616 PF01926 50S ribosome-binding GTPase Amir_1617 PF00072 Response regulator receiver domain Amir_1617 PF00196 Bacterial regulatory proteins, luxR family Amir_1618 PF07730 Histidine kinase Amir_1661 PF03707 Bacterial signalling protein N terminal repeat Amir_1661 PF00990 Diguanylate cyclase, GGDEF domain Amir_1661 PF00563 EAL domain Amir_1662 PF00075 RNase H Amir_1665 PF16499 Alpha galactosidase A Amir_1665 PF17801 Alpha galactosidase C-terminal beta sandwich domain Amir_1666 PF00931 NB-ARC domain Amir_1666 PF03704 Bacterial transcriptional activator domain Amir_1666 PF00486 Transcriptional regulatory protein, C terminal Amir_1670 PF00005 ABC transporter Amir_1671 PF00005 ABC transporter Amir_1671 PF12399 Branched-chain amino acid ATP-binding cassette transporter Amir_1677 PF01047 MarR family Amir_1677 PF00480 ROK family Amir_1679 PF00005 ABC transporter Amir_1679 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_1680 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1681 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1681 PF12911 N-terminal TM domain of oligopeptide transport permease C Amir_1682 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_1682 PF00005 ABC transporter Amir_1683 PF00232 Glycosyl hydrolase family 1 Amir_1688 PF03073 TspO/MBR family Amir_1689 PF04978 Protein of unknown function (DUF664) Amir_1690 PF05496 Holliday junction DNA helicase RuvB P-loop domain Amir_1690 PF17864 RuvB AAA lid domain Amir_1690 PF05491 RuvB C-terminal winged helix domain Amir_1691 PF01330 RuvA N terminal domain Amir_1691 PF07499 RuvA, C-terminal domain Amir_1692 PF02075 Crossover junction endodeoxyribonuclease RuvC Amir_1693 PF00990 Diguanylate cyclase, GGDEF domain Amir_1693 PF03707 Bacterial signalling protein N terminal repeat Amir_1693 PF00563 EAL domain Amir_1694 PF02699 Preprotein translocase subunit Amir_1695 PF07549 SecD/SecF GG Motif Amir_1695 PF02355 Protein export membrane protein Amir_1696 PF07549 SecD/SecF GG Motif Amir_1696 PF02355 Protein export membrane protein Amir_1697 PF00156 Phosphoribosyl transferase domain Amir_1698 PF02824 TGS domain Amir_1698 PF04607 Region found in RelA / SpoT proteins Amir_1698 PF13291 ACT domain Amir_1699 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Amir_1700 PF00753 Metallo-beta-lactamase superfamily Amir_1701 PF03129 Anticodon binding domain Amir_1701 PF13393 Histidyl-tRNA synthetase Amir_1709 PF00440 Bacterial regulatory proteins, tetR family Amir_1710 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain Amir_1710 PF08608 Wyosine base formation Amir_1712 PF01039 Carboxyl transferase domain Amir_1713 PF02785 Biotin carboxylase C-terminal domain Amir_1713 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amir_1713 PF00289 Biotin carboxylase, N-terminal domain Amir_1714 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_1714 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_1714 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_1717 PF05922 Peptidase inhibitor I9 Amir_1717 PF00082 Subtilase family Amir_1718 PF00082 Subtilase family Amir_1718 PF05922 Peptidase inhibitor I9 Amir_1719 PF00152 tRNA synthetases class II (D, K and N) Amir_1719 PF01336 OB-fold nucleic acid binding domain Amir_1719 PF02938 GAD domain Amir_1722 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Amir_1723 PF00672 HAMP domain Amir_1723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_1723 PF00512 His Kinase A (phospho-acceptor) domain Amir_1724 PF00486 Transcriptional regulatory protein, C terminal Amir_1724 PF00072 Response regulator receiver domain Amir_1726 PF04234 CopC domain Amir_1727 PF03167 Uracil DNA glycosylase superfamily Amir_1730 PF02397 Bacterial sugar transferase Amir_1731 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_1731 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_1732 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Amir_1733 PF01370 NAD dependent epimerase/dehydratase family Amir_1734 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Amir_1737 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Amir_1738 PF00132 Bacterial transferase hexapeptide (six repeats) Amir_1745 PF00534 Glycosyl transferases group 1 Amir_1745 PF00535 Glycosyl transferase family 2 Amir_1746 PF01943 Polysaccharide biosynthesis protein Amir_1747 PF00535 Glycosyl transferase family 2 Amir_1754 PF00069 Protein kinase domain Amir_1754 PF00400 WD domain, G-beta repeat Amir_1755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_1756 PF00378 Enoyl-CoA hydratase/isomerase Amir_1757 PF13673 Acetyltransferase (GNAT) domain Amir_1762 PF16921 Tex protein YqgF-like domain Amir_1762 PF09371 Tex-like protein N-terminal domain Amir_1762 PF17674 HHH domain Amir_1762 PF00575 S1 RNA binding domain Amir_1763 PF00248 Aldo/keto reductase family Amir_1764 PF12697 Alpha/beta hydrolase family Amir_1764 PF08241 Methyltransferase domain Amir_1765 PF00378 Enoyl-CoA hydratase/isomerase Amir_1770 PF03631 Virulence factor BrkB Amir_1773 PF00005 ABC transporter Amir_1774 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1776 PF00085 Thioredoxin Amir_1777 PF01243 Pyridoxamine 5'-phosphate oxidase Amir_1778 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amir_1779 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amir_1780 PF02571 Precorrin-6x reductase CbiJ/CobK Amir_1781 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amir_1782 PF02570 Precorrin-8X methylmutase Amir_1783 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Amir_1783 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Amir_1784 PF02514 CobN/Magnesium Chelatase Amir_1786 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1787 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1788 PF00232 Glycosyl hydrolase family 1 Amir_1789 PF00356 Bacterial regulatory proteins, lacI family Amir_1791 PF03442 Carbohydrate binding domain X2 Amir_1791 PF00942 Cellulose binding domain Amir_1792 PF06305 Lipopolysaccharide assembly protein A domain Amir_1793 PF00400 WD domain, G-beta repeat Amir_1793 PF12894 Anaphase-promoting complex subunit 4 WD40 domain Amir_1794 PF00480 ROK family Amir_1795 PF01261 Xylose isomerase-like TIM barrel Amir_1796 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Amir_1796 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Amir_1801 PF03364 Polyketide cyclase / dehydrase and lipid transport Amir_1802 PF06445 GyrI-like small molecule binding domain Amir_1802 PF12833 Helix-turn-helix domain Amir_1803 PF08240 Alcohol dehydrogenase GroES-like domain Amir_1803 PF00107 Zinc-binding dehydrogenase Amir_1803 PF13823 Alcohol dehydrogenase GroES-associated Amir_1805 PF00486 Transcriptional regulatory protein, C terminal Amir_1805 PF00072 Response regulator receiver domain Amir_1809 PF03633 Glycosyl hydrolase family 65, C-terminal domain Amir_1809 PF03636 Glycosyl hydrolase family 65, N-terminal domain Amir_1809 PF03632 Glycosyl hydrolase family 65 central catalytic domain Amir_1810 PF13419 Haloacid dehalogenase-like hydrolase Amir_1812 PF01022 Bacterial regulatory protein, arsR family Amir_1816 PF02467 Transcription factor WhiB Amir_1820 PF00877 NlpC/P60 family Amir_1822 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading Amir_1822 PF18416 N-acetylglucosamine binding protein domain 2 Amir_1824 PF00356 Bacterial regulatory proteins, lacI family Amir_1825 PF00356 Bacterial regulatory proteins, lacI family Amir_1826 PF01915 Glycosyl hydrolase family 3 C-terminal domain Amir_1826 PF00933 Glycosyl hydrolase family 3 N terminal domain Amir_1826 PF14310 Fibronectin type III-like domain Amir_1828 PF05448 Acetyl xylan esterase (AXE1) Amir_1830 PF00150 Cellulase (glycosyl hydrolase family 5) Amir_1830 PF02013 Cellulose or protein binding domain Amir_1833 PF04542 Sigma-70 region 2 Amir_1833 PF08281 Sigma-70, region 4 Amir_1839 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_1840 PF00245 Alkaline phosphatase Amir_1843 PF00544 Pectate lyase Amir_1844 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1845 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1847 PF13378 Enolase C-terminal domain-like Amir_1847 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amir_1848 PF00544 Pectate lyase Amir_1850 PF02983 Alpha-lytic protease prodomain Amir_1852 PF02653 Branched-chain amino acid transport system / permease component Amir_1853 PF02653 Branched-chain amino acid transport system / permease component Amir_1854 PF00005 ABC transporter Amir_1855 PF13407 Periplasmic binding protein domain Amir_1857 PF02018 Carbohydrate binding domain Amir_1857 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Amir_1858 PF04616 Glycosyl hydrolases family 43 Amir_1858 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Amir_1860 PF00356 Bacterial regulatory proteins, lacI family Amir_1861 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Amir_1861 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Amir_1862 PF00596 Class II Aldolase and Adducin N-terminal domain Amir_1863 PF11762 L-arabinose isomerase C-terminal domain Amir_1863 PF02610 L-arabinose isomerase Amir_1864 PF13407 Periplasmic binding protein domain Amir_1865 PF00005 ABC transporter Amir_1866 PF02653 Branched-chain amino acid transport system / permease component Amir_1868 PF18370 Rhamnogalacturonan I lyases beta-sheet domain Amir_1871 PF00356 Bacterial regulatory proteins, lacI family Amir_1877 PF04231 Endonuclease I Amir_1879 PF07730 Histidine kinase Amir_1879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_1881 PF00196 Bacterial regulatory proteins, luxR family Amir_1881 PF00072 Response regulator receiver domain Amir_1883 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Amir_1883 PF14572 Phosphoribosyl synthetase-associated domain Amir_1884 PF04434 SWIM zinc finger Amir_1885 PF05762 VWA domain containing CoxE-like protein Amir_1887 PF07728 AAA domain (dynein-related subfamily) Amir_1888 PF13569 Domain of unknown function (DUF4132) Amir_1889 PF13569 Domain of unknown function (DUF4132) Amir_1890 PF13569 Domain of unknown function (DUF4132) Amir_1891 PF00534 Glycosyl transferases group 1 Amir_1891 PF13439 Glycosyltransferase Family 4 Amir_1896 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Amir_1899 PF04539 Sigma-70 region 3 Amir_1899 PF04542 Sigma-70 region 2 Amir_1899 PF00140 Sigma-70 factor, region 1.2 Amir_1899 PF04545 Sigma-70, region 4 Amir_1900 PF03976 Polyphosphate kinase 2 (PPK2) Amir_1901 PF04226 Transglycosylase associated protein Amir_1905 PF00107 Zinc-binding dehydrogenase Amir_1905 PF08240 Alcohol dehydrogenase GroES-like domain Amir_1907 PF13185 GAF domain Amir_1907 PF13492 GAF domain Amir_1907 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_1907 PF07730 Histidine kinase Amir_1910 PF00196 Bacterial regulatory proteins, luxR family Amir_1910 PF00072 Response regulator receiver domain Amir_1911 PF00478 IMP dehydrogenase / GMP reductase domain Amir_1911 PF00571 CBS domain Amir_1912 PF00582 Universal stress protein family Amir_1918 PF09364 XFP N-terminal domain Amir_1918 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Amir_1918 PF09363 XFP C-terminal domain Amir_1919 PF00871 Acetokinase family Amir_1920 PF00069 Protein kinase domain Amir_1920 PF03793 PASTA domain Amir_1922 PF01757 Acyltransferase family Amir_1924 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Amir_1926 PF00356 Bacterial regulatory proteins, lacI family Amir_1928 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1929 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1930 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Amir_1931 PF13460 NAD(P)H-binding Amir_1931 PF11066 Protein of unknown function (DUF2867) Amir_1933 PF00072 Response regulator receiver domain Amir_1933 PF00486 Transcriptional regulatory protein, C terminal Amir_1934 PF00582 Universal stress protein family Amir_1935 PF00582 Universal stress protein family Amir_1937 PF00196 Bacterial regulatory proteins, luxR family Amir_1937 PF00072 Response regulator receiver domain Amir_1938 PF07730 Histidine kinase Amir_1938 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_1940 PF00005 ABC transporter Amir_1948 PF03459 TOBE domain Amir_1948 PF00005 ABC transporter Amir_1949 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1952 PF02909 Tetracyclin repressor-like, C-terminal domain Amir_1952 PF00440 Bacterial regulatory proteins, tetR family Amir_1953 PF07690 Major Facilitator Superfamily Amir_1955 PF13493 Domain of unknown function (DUF4118) Amir_1955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_1955 PF00512 His Kinase A (phospho-acceptor) domain Amir_1955 PF00582 Universal stress protein family Amir_1955 PF02702 Osmosensitive K+ channel His kinase sensor domain Amir_1957 PF02743 Cache domain Amir_1957 PF00672 HAMP domain Amir_1957 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_1960 PF06902 Divergent 4Fe-4S mono-cluster Amir_1961 PF00067 Cytochrome P450 Amir_1962 PF02146 Sir2 family Amir_1966 PF01047 MarR family Amir_1969 PF01738 Dienelactone hydrolase family Amir_1970 PF00196 Bacterial regulatory proteins, luxR family Amir_1970 PF00072 Response regulator receiver domain Amir_1972 PF00440 Bacterial regulatory proteins, tetR family Amir_1975 PF07477 Glycosyl hydrolase family 67 C-terminus Amir_1975 PF03648 Glycosyl hydrolase family 67 N-terminus Amir_1975 PF07488 Glycosyl hydrolase family 67 middle domain Amir_1976 PF02449 Beta-galactosidase Amir_1976 PF08532 Beta-galactosidase trimerisation domain Amir_1976 PF08533 Beta-galactosidase C-terminal domain Amir_1978 PF01229 Glycosyl hydrolases family 39 Amir_1980 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1981 PF00528 Binding-protein-dependent transport system inner membrane component Amir_1982 PF01915 Glycosyl hydrolase family 3 C-terminal domain Amir_1982 PF00933 Glycosyl hydrolase family 3 N terminal domain Amir_1982 PF14310 Fibronectin type III-like domain Amir_1983 PF00356 Bacterial regulatory proteins, lacI family Amir_1985 PF17871 AAA lid domain Amir_1985 PF00004 ATPase family associated with various cellular activities (AAA) Amir_1985 PF07724 AAA domain (Cdc48 subfamily) Amir_1985 PF02861 Clp amino terminal domain, pathogenicity island component Amir_1985 PF10431 C-terminal, D2-small domain, of ClpB protein Amir_1990 PF01636 Phosphotransferase enzyme family Amir_1991 PF13419 Haloacid dehalogenase-like hydrolase Amir_1994 PF03631 Virulence factor BrkB Amir_1996 PF00202 Aminotransferase class-III Amir_1997 PF00982 Glycosyltransferase family 20 Amir_2000 PF01761 3-dehydroquinate synthase Amir_2002 PF00483 Nucleotidyl transferase Amir_2006 PF00463 Isocitrate lyase family Amir_2007 PF09856 Predicted transcriptional regulator (DUF2083) Amir_2007 PF01381 Helix-turn-helix Amir_2007 PF06114 IrrE N-terminal-like domain Amir_2009 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2009 PF07730 Histidine kinase Amir_2009 PF05231 MASE1 Amir_2010 PF00196 Bacterial regulatory proteins, luxR family Amir_2010 PF00072 Response regulator receiver domain Amir_2012 PF00082 Subtilase family Amir_2012 PF05922 Peptidase inhibitor I9 Amir_2013 PF01494 FAD binding domain Amir_2015 PF04686 Streptomyces sporulation and cell division protein, SsgA Amir_2016 PF04545 Sigma-70, region 4 Amir_2016 PF04542 Sigma-70 region 2 Amir_2022 PF00202 Aminotransferase class-III Amir_2024 PF03301 Tryptophan 2,3-dioxygenase Amir_2025 PF00266 Aminotransferase class-V Amir_2028 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amir_2029 PF00324 Amino acid permease Amir_2031 PF00664 ABC transporter transmembrane region Amir_2031 PF00005 ABC transporter Amir_2032 PF10502 Signal peptidase, peptidase S26 Amir_2034 PF03741 Integral membrane protein TerC family Amir_2036 PF01494 FAD binding domain Amir_2037 PF02665 Nitrate reductase gamma subunit Amir_2038 PF02613 Nitrate reductase delta subunit Amir_2039 PF13247 4Fe-4S dicluster domain Amir_2039 PF14711 Respiratory nitrate reductase beta C-terminal Amir_2040 PF00384 Molybdopterin oxidoreductase Amir_2040 PF01568 Molydopterin dinucleotide binding domain Amir_2041 PF07690 Major Facilitator Superfamily Amir_2046 PF00764 Arginosuccinate synthase Amir_2048 PF01341 Glycosyl hydrolases family 6 Amir_2048 PF00553 Cellulose binding domain Amir_2048 PF00041 Fibronectin type III domain Amir_2049 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Amir_2050 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2051 PF00005 ABC transporter Amir_2051 PF00571 CBS domain Amir_2052 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2056 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2057 PF00005 ABC transporter Amir_2057 PF08402 TOBE domain Amir_2061 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Amir_2062 PF00576 HIUase/Transthyretin family Amir_2063 PF13556 PucR C-terminal helix-turn-helix domain Amir_2063 PF17853 GGDEF-like domain Amir_2063 PF05651 Putative sugar diacid recognition Amir_2070 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_2072 PF04229 GrpB protein Amir_2073 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Amir_2073 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amir_2074 PF00188 Cysteine-rich secretory protein family Amir_2075 PF13520 Amino acid permease Amir_2076 PF00120 Glutamine synthetase, catalytic domain Amir_2077 PF07722 Peptidase C26 Amir_2078 PF00171 Aldehyde dehydrogenase family Amir_2080 PF07729 FCD domain Amir_2080 PF00392 Bacterial regulatory proteins, gntR family Amir_2085 PF13732 Domain of unknown function (DUF4162) Amir_2085 PF00005 ABC transporter Amir_2089 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Amir_2089 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Amir_2089 PF03129 Anticodon binding domain Amir_2090 PF01230 HIT domain Amir_2093 PF03279 Bacterial lipid A biosynthesis acyltransferase Amir_2094 PF13439 Glycosyltransferase Family 4 Amir_2095 PF00293 NUDIX domain Amir_2096 PF08000 Bacterial PH domain Amir_2099 PF01979 Amidohydrolase family Amir_2101 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Amir_2104 PF00202 Aminotransferase class-III Amir_2105 PF00171 Aldehyde dehydrogenase family Amir_2107 PF14492 Elongation Factor G, domain II Amir_2107 PF00679 Elongation factor G C-terminus Amir_2107 PF00009 Elongation factor Tu GTP binding domain Amir_2107 PF03144 Elongation factor Tu domain 2 Amir_2107 PF03764 Elongation factor G, domain IV Amir_2108 PF01680 SOR/SNZ family Amir_2109 PF01174 SNO glutamine amidotransferase family Amir_2110 PF01709 Transcriptional regulator Amir_2113 PF00440 Bacterial regulatory proteins, tetR family Amir_2113 PF08362 YcdC-like protein, C-terminal region Amir_2114 PF07690 Major Facilitator Superfamily Amir_2115 PF00067 Cytochrome P450 Amir_2116 PF00067 Cytochrome P450 Amir_2120 PF00440 Bacterial regulatory proteins, tetR family Amir_2122 PF04107 Glutamate-cysteine ligase family 2(GCS2) Amir_2123 PF03781 Sulfatase-modifying factor enzyme 1 Amir_2123 PF12867 DinB superfamily Amir_2125 PF10017 Histidine-specific methyltransferase, SAM-dependent Amir_2132 PF00330 Aconitase family (aconitate hydratase) Amir_2132 PF00694 Aconitase C-terminal domain Amir_2133 PF00005 ABC transporter Amir_2137 PF02146 Sir2 family Amir_2139 PF13193 AMP-binding enzyme C-terminal domain Amir_2139 PF00501 AMP-binding enzyme Amir_2140 PF00877 NlpC/P60 family Amir_2141 PF04542 Sigma-70 region 2 Amir_2141 PF08281 Sigma-70, region 4 Amir_2143 PF12804 MobA-like NTP transferase domain Amir_2144 PF05724 Thiopurine S-methyltransferase (TPMT) Amir_2145 PF17863 AAA lid domain Amir_2145 PF07726 ATPase family associated with various cellular activities (AAA) Amir_2146 PF01882 Protein of unknown function DUF58 Amir_2147 PF13519 von Willebrand factor type A domain Amir_2150 PF00512 His Kinase A (phospho-acceptor) domain Amir_2150 PF00672 HAMP domain Amir_2150 PF13426 PAS domain Amir_2150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2151 PF00072 Response regulator receiver domain Amir_2151 PF00486 Transcriptional regulatory protein, C terminal Amir_2161 PF02470 MlaD protein Amir_2166 PF01341 Glycosyl hydrolases family 6 Amir_2166 PF00553 Cellulose binding domain Amir_2167 PF00553 Cellulose binding domain Amir_2167 PF00041 Fibronectin type III domain Amir_2167 PF02011 Glycosyl hydrolase family 48 Amir_2168 PF14310 Fibronectin type III-like domain Amir_2168 PF00933 Glycosyl hydrolase family 3 N terminal domain Amir_2168 PF01915 Glycosyl hydrolase family 3 C-terminal domain Amir_2168 PF07691 PA14 domain Amir_2169 PF00356 Bacterial regulatory proteins, lacI family Amir_2171 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2172 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2173 PF02449 Beta-galactosidase Amir_2173 PF08532 Beta-galactosidase trimerisation domain Amir_2173 PF08533 Beta-galactosidase C-terminal domain Amir_2175 PF03091 CutA1 divalent ion tolerance protein Amir_2176 PF13411 MerR HTH family regulatory protein Amir_2179 PF13183 4Fe-4S dicluster domain Amir_2179 PF01565 FAD binding domain Amir_2179 PF02913 FAD linked oxidases, C-terminal domain Amir_2185 PF00106 short chain dehydrogenase Amir_2191 PF01341 Glycosyl hydrolases family 6 Amir_2191 PF00041 Fibronectin type III domain Amir_2191 PF00553 Cellulose binding domain Amir_2192 PF01078 Magnesium chelatase, subunit ChlI Amir_2192 PF17863 AAA lid domain Amir_2197 PF00672 HAMP domain Amir_2197 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_2198 PF00115 Cytochrome C and Quinol oxidase polypeptide I Amir_2201 PF01406 tRNA synthetases class I (C) catalytic domain Amir_2202 PF05922 Peptidase inhibitor I9 Amir_2202 PF00082 Subtilase family Amir_2207 PF00072 Response regulator receiver domain Amir_2207 PF00486 Transcriptional regulatory protein, C terminal Amir_2208 PF00486 Transcriptional regulatory protein, C terminal Amir_2208 PF00072 Response regulator receiver domain Amir_2209 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB Amir_2209 PF00672 HAMP domain Amir_2209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2209 PF08448 PAS fold Amir_2209 PF00512 His Kinase A (phospho-acceptor) domain Amir_2211 PF00809 Pterin binding enzyme Amir_2211 PF02965 Vitamin B12 dependent methionine synthase, activation domain Amir_2211 PF02607 B12 binding domain Amir_2211 PF02574 Homocysteine S-methyltransferase Amir_2211 PF02310 B12 binding domain Amir_2212 PF13419 Haloacid dehalogenase-like hydrolase Amir_2214 PF02909 Tetracyclin repressor-like, C-terminal domain Amir_2214 PF00440 Bacterial regulatory proteins, tetR family Amir_2215 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_2215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Amir_2216 PF00106 short chain dehydrogenase Amir_2218 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Amir_2219 PF03547 Membrane transport protein Amir_2223 PF02163 Peptidase family M50 Amir_2223 PF00571 CBS domain Amir_2225 PF00072 Response regulator receiver domain Amir_2225 PF00196 Bacterial regulatory proteins, luxR family Amir_2228 PF08704 tRNA methyltransferase complex GCD14 subunit Amir_2231 PF00004 ATPase family associated with various cellular activities (AAA) Amir_2231 PF17758 Proteasomal ATPase OB N-terminal domain Amir_2231 PF16450 Proteasomal ATPase OB C-terminal domain Amir_2232 PF00196 Bacterial regulatory proteins, luxR family Amir_2232 PF00072 Response regulator receiver domain Amir_2233 PF07730 Histidine kinase Amir_2234 PF00005 ABC transporter Amir_2237 PF00293 NUDIX domain Amir_2239 PF03136 Pup-ligase protein Amir_2240 PF05639 Pup-like protein Amir_2241 PF00227 Proteasome subunit Amir_2242 PF00227 Proteasome subunit Amir_2243 PF00106 short chain dehydrogenase Amir_2245 PF00196 Bacterial regulatory proteins, luxR family Amir_2246 PF01569 PAP2 superfamily Amir_2247 PF03136 Pup-ligase protein Amir_2249 PF13280 WYL domain Amir_2250 PF13280 WYL domain Amir_2251 PF02416 mttA/Hcf106 family Amir_2252 PF00902 Sec-independent protein translocase protein (TatC) Amir_2253 PF00781 Diacylglycerol kinase catalytic domain Amir_2254 PF08148 DSHCT (NUC185) domain Amir_2254 PF00270 DEAD/DEAH box helicase Amir_2254 PF00271 Helicase conserved C-terminal domain Amir_2256 PF13530 Sterol carrier protein domain Amir_2256 PF17668 Acetyltransferase (GNAT) domain Amir_2257 PF01367 5'-3' exonuclease, C-terminal SAM fold Amir_2257 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Amir_2258 PF01321 Creatinase/Prolidase N-terminal domain Amir_2258 PF00557 Metallopeptidase family M24 Amir_2259 PF01037 Lrp/AsnC ligand binding domain Amir_2262 PF00990 Diguanylate cyclase, GGDEF domain Amir_2267 PF03880 DbpA RNA binding domain Amir_2267 PF00270 DEAD/DEAH box helicase Amir_2267 PF00271 Helicase conserved C-terminal domain Amir_2268 PF04607 Region found in RelA / SpoT proteins Amir_2271 PF04264 YceI-like domain Amir_2272 PF01047 MarR family Amir_2273 PF17863 AAA lid domain Amir_2273 PF07726 ATPase family associated with various cellular activities (AAA) Amir_2275 PF00501 AMP-binding enzyme Amir_2275 PF13193 AMP-binding enzyme C-terminal domain Amir_2277 PF02310 B12 binding domain Amir_2277 PF01642 Methylmalonyl-CoA mutase Amir_2280 PF01751 Toprim domain Amir_2280 PF00204 DNA gyrase B Amir_2280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2280 PF00986 DNA gyrase B subunit, carboxyl terminus Amir_2281 PF03989 DNA gyrase C-terminal domain, beta-propeller Amir_2281 PF03989 DNA gyrase C-terminal domain, beta-propeller Amir_2281 PF00521 DNA gyrase/topoisomerase IV, subunit A Amir_2281 PF00521 DNA gyrase/topoisomerase IV, subunit A Amir_2285 PF03358 NADPH-dependent FMN reductase Amir_2286 PF08029 HisG, C-terminal domain Amir_2286 PF01634 ATP phosphoribosyltransferase Amir_2287 PF00563 EAL domain Amir_2287 PF00990 Diguanylate cyclase, GGDEF domain Amir_2287 PF00498 FHA domain Amir_2291 PF00005 ABC transporter Amir_2296 PF01209 ubiE/COQ5 methyltransferase family Amir_2298 PF00480 ROK family Amir_2299 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_2299 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_2301 PF04030 D-arabinono-1,4-lactone oxidase Amir_2301 PF01565 FAD binding domain Amir_2304 PF00440 Bacterial regulatory proteins, tetR family Amir_2307 PF13649 Methyltransferase domain Amir_2307 PF17827 PrmC N-terminal domain Amir_2310 PF04107 Glutamate-cysteine ligase family 2(GCS2) Amir_2311 PF00296 Luciferase-like monooxygenase Amir_2312 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2312 PF00512 His Kinase A (phospho-acceptor) domain Amir_2315 PF00771 FHIPEP family Amir_2317 PF00072 Response regulator receiver domain Amir_2319 PF00072 Response regulator receiver domain Amir_2320 PF01739 CheR methyltransferase, SAM binding domain Amir_2320 PF03705 CheR methyltransferase, all-alpha domain Amir_2321 PF01339 CheB methylesterase Amir_2321 PF00072 Response regulator receiver domain Amir_2324 PF01584 CheW-like domain Amir_2325 PF01584 CheW-like domain Amir_2325 PF09078 CheY binding Amir_2325 PF01627 Hpt domain Amir_2325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2325 PF02895 Signal transducing histidine kinase, homodimeric domain Amir_2328 PF01312 FlhB HrpN YscU SpaS Family Amir_2329 PF01311 Bacterial export proteins, family 1 Amir_2330 PF01313 Bacterial export proteins, family 3 Amir_2331 PF00813 FliP family Amir_2333 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Amir_2336 PF00691 OmpA family Amir_2336 PF13677 Membrane MotB of proton-channel complex MotA/MotB Amir_2337 PF01618 MotA/TolQ/ExbB proton channel family Amir_2339 PF00460 Flagella basal body rod protein Amir_2339 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Amir_2342 PF01464 Transglycosylase SLT domain Amir_2344 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Amir_2344 PF02874 ATP synthase alpha/beta family, beta-barrel domain Amir_2344 PF18269 T3SS EscN ATPase C-terminal domain Amir_2346 PF14842 FliG N-terminal domain Amir_2346 PF14841 FliG middle domain Amir_2346 PF01706 FliG C-terminal domain Amir_2347 PF01514 Secretory protein of YscJ/FliF family Amir_2347 PF08345 Flagellar M-ring protein C-terminal Amir_2348 PF02049 Flagellar hook-basal body complex protein FliE Amir_2349 PF00460 Flagella basal body rod protein Amir_2349 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Amir_2352 PF02561 Flagellar protein FliS Amir_2354 PF00669 Bacterial flagellin N-terminal helical region Amir_2354 PF07196 Flagellin hook IN motif Amir_2354 PF00700 Bacterial flagellin C-terminal helical region Amir_2355 PF04542 Sigma-70 region 2 Amir_2355 PF04539 Sigma-70 region 3 Amir_2355 PF04545 Sigma-70, region 4 Amir_2357 PF00460 Flagella basal body rod protein Amir_2357 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Amir_2359 PF02623 FliW protein Amir_2360 PF02599 Global regulator protein family Amir_2361 PF05922 Peptidase inhibitor I9 Amir_2361 PF00082 Subtilase family Amir_2362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2362 PF00512 His Kinase A (phospho-acceptor) domain Amir_2362 PF08448 PAS fold Amir_2362 PF13188 PAS domain Amir_2362 PF00072 Response regulator receiver domain Amir_2363 PF00072 Response regulator receiver domain Amir_2366 PF00512 His Kinase A (phospho-acceptor) domain Amir_2366 PF16736 Single Cache-like Amir_2366 PF00989 PAS fold Amir_2366 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2367 PF13188 PAS domain Amir_2367 PF08448 PAS fold Amir_2367 PF00512 His Kinase A (phospho-acceptor) domain Amir_2367 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2367 PF00072 Response regulator receiver domain Amir_2368 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2368 PF00072 Response regulator receiver domain Amir_2368 PF13426 PAS domain Amir_2368 PF08448 PAS fold Amir_2368 PF00512 His Kinase A (phospho-acceptor) domain Amir_2370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Amir_2370 PF00072 Response regulator receiver domain Amir_2370 PF01627 Hpt domain Amir_2370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2370 PF00672 HAMP domain Amir_2370 PF00512 His Kinase A (phospho-acceptor) domain Amir_2371 PF00158 Sigma-54 interaction domain Amir_2371 PF00072 Response regulator receiver domain Amir_2371 PF02954 Bacterial regulatory protein, Fis family Amir_2376 PF01047 MarR family Amir_2380 PF00360 Phytochrome region Amir_2380 PF08446 PAS fold Amir_2380 PF01590 GAF domain Amir_2380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2380 PF00512 His Kinase A (phospho-acceptor) domain Amir_2383 PF01037 Lrp/AsnC ligand binding domain Amir_2384 PF05977 Transmembrane secretion effector Amir_2385 PF16859 Tetracyclin repressor-like, C-terminal domain Amir_2385 PF00440 Bacterial regulatory proteins, tetR family Amir_2392 PF00183 Hsp90 protein Amir_2400 PF00296 Luciferase-like monooxygenase Amir_2401 PF08021 Siderophore-interacting FAD-binding domain Amir_2401 PF04954 Siderophore-interacting protein Amir_2403 PF00356 Bacterial regulatory proteins, lacI family Amir_2405 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2406 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2408 PF00005 ABC transporter Amir_2409 PF00196 Bacterial regulatory proteins, luxR family Amir_2409 PF00072 Response regulator receiver domain Amir_2410 PF07730 Histidine kinase Amir_2416 PF00582 Universal stress protein family Amir_2417 PF04055 Radical SAM superfamily Amir_2418 PF02901 Pyruvate formate lyase-like Amir_2418 PF01228 Glycine radical Amir_2421 PF17961 Bacterial Ig domain Amir_2421 PF04650 YSIRK type signal peptide Amir_2421 PF10425 C-terminus of bacterial fibrinogen-binding adhesin Amir_2421 PF17210 SdrD B-like domain Amir_2421 PF00746 LPXTG cell wall anchor motif Amir_2425 PF00732 GMC oxidoreductase Amir_2425 PF05199 GMC oxidoreductase Amir_2427 PF12697 Alpha/beta hydrolase family Amir_2428 PF01565 FAD binding domain Amir_2428 PF02913 FAD linked oxidases, C-terminal domain Amir_2435 PF08220 DeoR-like helix-turn-helix domain Amir_2436 PF00999 Sodium/hydrogen exchanger family Amir_2437 PF11774 Lsr2 Amir_2438 PF12320 Type 5 capsule protein repressor C-terminal domain Amir_2438 PF00149 Calcineurin-like phosphoesterase Amir_2442 PF04954 Siderophore-interacting protein Amir_2442 PF08021 Siderophore-interacting FAD-binding domain Amir_2445 PF00067 Cytochrome P450 Amir_2446 PF03466 LysR substrate binding domain Amir_2446 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_2448 PF01169 Uncharacterized protein family UPF0016 Amir_2455 PF00892 EamA-like transporter family Amir_2456 PF00005 ABC transporter Amir_2456 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_2457 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_2458 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2459 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2459 PF12911 N-terminal TM domain of oligopeptide transport permease C Amir_2460 PF01638 HxlR-like helix-turn-helix Amir_2461 PF08240 Alcohol dehydrogenase GroES-like domain Amir_2461 PF00107 Zinc-binding dehydrogenase Amir_2464 PF00486 Transcriptional regulatory protein, C terminal Amir_2464 PF00072 Response regulator receiver domain Amir_2465 PF00512 His Kinase A (phospho-acceptor) domain Amir_2465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2467 PF02837 Glycosyl hydrolases family 2, sugar binding domain Amir_2467 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 Amir_2467 PF00703 Glycosyl hydrolases family 2 Amir_2467 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Amir_2469 PF07729 FCD domain Amir_2469 PF00392 Bacterial regulatory proteins, gntR family Amir_2475 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading Amir_2475 PF18416 N-acetylglucosamine binding protein domain 2 Amir_2476 PF03741 Integral membrane protein TerC family Amir_2477 PF00857 Isochorismatase family Amir_2487 PF13462 Thioredoxin Amir_2487 PF00069 Protein kinase domain Amir_2491 PF00067 Cytochrome P450 Amir_2492 PF00668 Condensation domain Amir_2492 PF00550 Phosphopantetheine attachment site Amir_2492 PF13193 AMP-binding enzyme C-terminal domain Amir_2492 PF00501 AMP-binding enzyme Amir_2493 PF00550 Phosphopantetheine attachment site Amir_2493 PF00698 Acyl transferase domain Amir_2493 PF16197 Ketoacyl-synthetase C-terminal extension Amir_2493 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_2493 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_2493 PF08659 KR domain Amir_2494 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_2494 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_2494 PF14765 Polyketide synthase dehydratase Amir_2494 PF00550 Phosphopantetheine attachment site Amir_2494 PF00698 Acyl transferase domain Amir_2494 PF16197 Ketoacyl-synthetase C-terminal extension Amir_2494 PF08659 KR domain Amir_2496 PF00561 alpha/beta hydrolase fold Amir_2497 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Amir_2498 PF00005 ABC transporter Amir_2498 PF00664 ABC transporter transmembrane region Amir_2503 PF03795 YCII-related domain Amir_2504 PF04542 Sigma-70 region 2 Amir_2504 PF08281 Sigma-70, region 4 Amir_2506 PF00171 Aldehyde dehydrogenase family Amir_2511 PF07728 AAA domain (dynein-related subfamily) Amir_2512 PF05762 VWA domain containing CoxE-like protein Amir_2515 PF12833 Helix-turn-helix domain Amir_2515 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Amir_2517 PF06628 Catalase-related immune-responsive Amir_2517 PF00199 Catalase Amir_2517 PF18011 C-terminal domain found in long catalases Amir_2519 PF02567 Phenazine biosynthesis-like protein Amir_2522 PF03704 Bacterial transcriptional activator domain Amir_2522 PF00486 Transcriptional regulatory protein, C terminal Amir_2522 PF00931 NB-ARC domain Amir_2523 PF07690 Major Facilitator Superfamily Amir_2525 PF00440 Bacterial regulatory proteins, tetR family Amir_2525 PF17754 MftR C-terminal domain Amir_2528 PF13411 MerR HTH family regulatory protein Amir_2531 PF16919 Protein kinase G rubredoxin domain Amir_2531 PF00069 Protein kinase domain Amir_2531 PF16918 Protein kinase G tetratricopeptide repeat Amir_2534 PF01547 Bacterial extracellular solute-binding protein Amir_2535 PF00067 Cytochrome P450 Amir_2536 PF00106 short chain dehydrogenase Amir_2537 PF07690 Major Facilitator Superfamily Amir_2540 PF08148 DSHCT (NUC185) domain Amir_2540 PF00270 DEAD/DEAH box helicase Amir_2540 PF00271 Helicase conserved C-terminal domain Amir_2548 PF00873 AcrB/AcrD/AcrF family Amir_2551 PF07690 Major Facilitator Superfamily Amir_2553 PF02628 Cytochrome oxidase assembly protein Amir_2555 PF00990 Diguanylate cyclase, GGDEF domain Amir_2555 PF08447 PAS fold Amir_2555 PF08448 PAS fold Amir_2555 PF00563 EAL domain Amir_2557 PF00440 Bacterial regulatory proteins, tetR family Amir_2558 PF00106 short chain dehydrogenase Amir_2563 PF03211 Pectate lyase Amir_2564 PF02423 Ornithine cyclodeaminase/mu-crystallin family Amir_2565 PF14031 Putative serine dehydratase domain Amir_2565 PF01168 Alanine racemase, N-terminal domain Amir_2568 PF05401 Nodulation protein S (NodS) Amir_2571 PF03211 Pectate lyase Amir_2572 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2573 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2575 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Amir_2576 PF01301 Glycosyl hydrolases family 35 Amir_2577 PF00356 Bacterial regulatory proteins, lacI family Amir_2579 PF08281 Sigma-70, region 4 Amir_2579 PF04542 Sigma-70 region 2 Amir_2586 PF00331 Glycosyl hydrolase family 10 Amir_2586 PF00652 Ricin-type beta-trefoil lectin domain Amir_2589 PF02909 Tetracyclin repressor-like, C-terminal domain Amir_2589 PF00440 Bacterial regulatory proteins, tetR family Amir_2593 PF01661 Macro domain Amir_2594 PF01323 DSBA-like thioredoxin domain Amir_2596 PF07690 Major Facilitator Superfamily Amir_2609 PF00440 Bacterial regulatory proteins, tetR family Amir_2609 PF08361 MAATS-type transcriptional repressor, C-terminal region Amir_2610 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Amir_2611 PF05368 NmrA-like family Amir_2614 PF00067 Cytochrome P450 Amir_2616 PF00005 ABC transporter Amir_2620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amir_2621 PF01156 Inosine-uridine preferring nucleoside hydrolase Amir_2622 PF07690 Major Facilitator Superfamily Amir_2623 PF00296 Luciferase-like monooxygenase Amir_2625 PF00296 Luciferase-like monooxygenase Amir_2627 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2628 PF00005 ABC transporter Amir_2631 PF00512 His Kinase A (phospho-acceptor) domain Amir_2631 PF00672 HAMP domain Amir_2631 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2632 PF00072 Response regulator receiver domain Amir_2632 PF00486 Transcriptional regulatory protein, C terminal Amir_2633 PF00571 CBS domain Amir_2633 PF03471 Transporter associated domain Amir_2633 PF01595 Cyclin M transmembrane N-terminal domain Amir_2635 PF08240 Alcohol dehydrogenase GroES-like domain Amir_2635 PF00107 Zinc-binding dehydrogenase Amir_2637 PF01799 [2Fe-2S] binding domain Amir_2637 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Amir_2637 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amir_2638 PF00743 Flavin-binding monooxygenase-like Amir_2645 PF00155 Aminotransferase class I and II Amir_2645 PF00392 Bacterial regulatory proteins, gntR family Amir_2646 PF07690 Major Facilitator Superfamily Amir_2647 PF02733 Dak1 domain Amir_2647 PF02734 DAK2 domain Amir_2648 PF02502 Ribose/Galactose Isomerase Amir_2649 PF00121 Triosephosphate isomerase Amir_2650 PF01261 Xylose isomerase-like TIM barrel Amir_2651 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term Amir_2651 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Amir_2655 PF00005 ABC transporter Amir_2660 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Amir_2662 PF01588 Putative tRNA binding domain Amir_2662 PF09334 tRNA synthetases class I (M) Amir_2663 PF00206 Lyase Amir_2663 PF02655 ATP-grasp domain Amir_2667 PF00999 Sodium/hydrogen exchanger family Amir_2668 PF02142 MGS-like domain Amir_2668 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amir_2668 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Amir_2671 PF00891 O-methyltransferase domain Amir_2676 PF00005 ABC transporter Amir_2678 PF00975 Thioesterase domain Amir_2680 PF07690 Major Facilitator Superfamily Amir_2681 PF00550 Phosphopantetheine attachment site Amir_2681 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_2681 PF16197 Ketoacyl-synthetase C-terminal extension Amir_2681 PF00698 Acyl transferase domain Amir_2681 PF08659 KR domain Amir_2681 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_2681 PF14765 Polyketide synthase dehydratase Amir_2682 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_2682 PF08659 KR domain Amir_2682 PF14765 Polyketide synthase dehydratase Amir_2682 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_2682 PF16197 Ketoacyl-synthetase C-terminal extension Amir_2682 PF00698 Acyl transferase domain Amir_2682 PF00550 Phosphopantetheine attachment site Amir_2683 PF00975 Thioesterase domain Amir_2683 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_2683 PF16197 Ketoacyl-synthetase C-terminal extension Amir_2683 PF00698 Acyl transferase domain Amir_2683 PF00550 Phosphopantetheine attachment site Amir_2683 PF18369 Polyketide synthase dimerisation element domain Amir_2683 PF08990 Erythronolide synthase docking Amir_2683 PF08659 KR domain Amir_2683 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_2684 PF14765 Polyketide synthase dehydratase Amir_2684 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_2684 PF08659 KR domain Amir_2684 PF00550 Phosphopantetheine attachment site Amir_2684 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_2684 PF16197 Ketoacyl-synthetase C-terminal extension Amir_2684 PF00698 Acyl transferase domain Amir_2685 PF00561 alpha/beta hydrolase fold Amir_2688 PF00975 Thioesterase domain Amir_2688 PF13193 AMP-binding enzyme C-terminal domain Amir_2688 PF00501 AMP-binding enzyme Amir_2688 PF00668 Condensation domain Amir_2688 PF00550 Phosphopantetheine attachment site Amir_2689 PF13193 AMP-binding enzyme C-terminal domain Amir_2689 PF00668 Condensation domain Amir_2689 PF00501 AMP-binding enzyme Amir_2689 PF00550 Phosphopantetheine attachment site Amir_2691 PF00155 Aminotransferase class I and II Amir_2693 PF00067 Cytochrome P450 Amir_2695 PF08659 KR domain Amir_2695 PF00550 Phosphopantetheine attachment site Amir_2695 PF00698 Acyl transferase domain Amir_2695 PF16197 Ketoacyl-synthetase C-terminal extension Amir_2695 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_2695 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_2695 PF14765 Polyketide synthase dehydratase Amir_2697 PF00005 ABC transporter Amir_2699 PF00072 Response regulator receiver domain Amir_2699 PF00196 Bacterial regulatory proteins, luxR family Amir_2707 PF01032 FecCD transport family Amir_2708 PF00005 ABC transporter Amir_2710 PF00753 Metallo-beta-lactamase superfamily Amir_2714 PF00440 Bacterial regulatory proteins, tetR family Amir_2717 PF00793 DAHP synthetase I family Amir_2718 PF07690 Major Facilitator Superfamily Amir_2719 PF00501 AMP-binding enzyme Amir_2719 PF13193 AMP-binding enzyme C-terminal domain Amir_2719 PF00668 Condensation domain Amir_2719 PF00550 Phosphopantetheine attachment site Amir_2720 PF00005 ABC transporter Amir_2721 PF01032 FecCD transport family Amir_2722 PF01032 FecCD transport family Amir_2723 PF01497 Periplasmic binding protein Amir_2724 PF08021 Siderophore-interacting FAD-binding domain Amir_2724 PF04954 Siderophore-interacting protein Amir_2726 PF00501 AMP-binding enzyme Amir_2726 PF13193 AMP-binding enzyme C-terminal domain Amir_2727 PF00425 chorismate binding enzyme Amir_2728 PF00106 short chain dehydrogenase Amir_2730 PF01032 FecCD transport family Amir_2731 PF00005 ABC transporter Amir_2733 PF13443 Cro/C1-type HTH DNA-binding domain Amir_2736 PF07730 Histidine kinase Amir_2737 PF00196 Bacterial regulatory proteins, luxR family Amir_2737 PF00072 Response regulator receiver domain Amir_2739 PF03952 Enolase, N-terminal domain Amir_2739 PF00113 Enolase, C-terminal TIM barrel domain Amir_2742 PF13732 Domain of unknown function (DUF4162) Amir_2742 PF00005 ABC transporter Amir_2745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_2754 PF07690 Major Facilitator Superfamily Amir_2756 PF01979 Amidohydrolase family Amir_2756 PF13382 Adenine deaminase C-terminal domain Amir_2757 PF00072 Response regulator receiver domain Amir_2757 PF00196 Bacterial regulatory proteins, luxR family Amir_2759 PF12704 MacB-like periplasmic core domain Amir_2759 PF00005 ABC transporter Amir_2759 PF02687 FtsX-like permease family Amir_2765 PF00480 ROK family Amir_2765 PF01047 MarR family Amir_2769 PF00403 Heavy-metal-associated domain Amir_2770 PF05425 Copper resistance protein D Amir_2770 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) Amir_2773 PF08281 Sigma-70, region 4 Amir_2773 PF04542 Sigma-70 region 2 Amir_2774 PF13490 Putative zinc-finger Amir_2775 PF00583 Acetyltransferase (GNAT) family Amir_2776 PF00440 Bacterial regulatory proteins, tetR family Amir_2777 PF00664 ABC transporter transmembrane region Amir_2777 PF00005 ABC transporter Amir_2780 PF07690 Major Facilitator Superfamily Amir_2781 PF18448 Carbohydrate binding domain Amir_2781 PF03442 Carbohydrate binding domain X2 Amir_2781 PF00150 Cellulase (glycosyl hydrolase family 5) Amir_2782 PF03466 LysR substrate binding domain Amir_2782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_2783 PF00291 Pyridoxal-phosphate dependent enzyme Amir_2783 PF13291 ACT domain Amir_2785 PF00171 Aldehyde dehydrogenase family Amir_2788 PF04542 Sigma-70 region 2 Amir_2788 PF08281 Sigma-70, region 4 Amir_2790 PF03176 MMPL family Amir_2794 PF03780 Asp23 family, cell envelope-related function Amir_2803 PF13439 Glycosyltransferase Family 4 Amir_2811 PF00196 Bacterial regulatory proteins, luxR family Amir_2811 PF00072 Response regulator receiver domain Amir_2815 PF05175 Methyltransferase small domain Amir_2815 PF07109 Magnesium-protoporphyrin IX methyltransferase C-terminus Amir_2816 PF01370 NAD dependent epimerase/dehydratase family Amir_2817 PF04055 Radical SAM superfamily Amir_2817 PF13186 Iron-sulfur cluster-binding domain Amir_2819 PF00534 Glycosyl transferases group 1 Amir_2819 PF13579 Glycosyl transferase 4-like domain Amir_2820 PF02585 GlcNAc-PI de-N-acetylase Amir_2821 PF01370 NAD dependent epimerase/dehydratase family Amir_2824 PF00005 ABC transporter Amir_2826 PF08659 KR domain Amir_2826 PF00550 Phosphopantetheine attachment site Amir_2826 PF14765 Polyketide synthase dehydratase Amir_2826 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_2826 PF16197 Ketoacyl-synthetase C-terminal extension Amir_2826 PF00107 Zinc-binding dehydrogenase Amir_2826 PF08240 Alcohol dehydrogenase GroES-like domain Amir_2826 PF00698 Acyl transferase domain Amir_2826 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_2830 PF00356 Bacterial regulatory proteins, lacI family Amir_2832 PF13416 Bacterial extracellular solute-binding protein Amir_2833 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2834 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2837 PF04616 Glycosyl hydrolases family 43 Amir_2837 PF03422 Carbohydrate binding module (family 6) Amir_2838 PF07532 Bacterial Ig-like domain (group 4) Amir_2839 PF00561 alpha/beta hydrolase fold Amir_2841 PF00376 MerR family regulatory protein Amir_2841 PF09278 MerR, DNA binding Amir_2842 PF00196 Bacterial regulatory proteins, luxR family Amir_2842 PF00072 Response regulator receiver domain Amir_2845 PF07729 FCD domain Amir_2845 PF00392 Bacterial regulatory proteins, gntR family Amir_2846 PF00205 Thiamine pyrophosphate enzyme, central domain Amir_2846 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amir_2846 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Amir_2847 PF01546 Peptidase family M20/M25/M40 Amir_2847 PF07687 Peptidase dimerisation domain Amir_2848 PF00296 Luciferase-like monooxygenase Amir_2850 PF05378 Hydantoinase/oxoprolinase N-terminal region Amir_2850 PF01968 Hydantoinase/oxoprolinase Amir_2851 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2852 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2853 PF00005 ABC transporter Amir_2853 PF08402 TOBE domain Amir_2855 PF00106 short chain dehydrogenase Amir_2858 PF07690 Major Facilitator Superfamily Amir_2859 PF08362 YcdC-like protein, C-terminal region Amir_2859 PF00440 Bacterial regulatory proteins, tetR family Amir_2870 PF03527 RHS protein Amir_2870 PF05593 RHS Repeat Amir_2872 PF03330 Lytic transglycolase Amir_2874 PF01032 FecCD transport family Amir_2875 PF00005 ABC transporter Amir_2878 PF01494 FAD binding domain Amir_2882 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Amir_2887 PF00893 Small Multidrug Resistance protein Amir_2888 PF07690 Major Facilitator Superfamily Amir_2889 PF00440 Bacterial regulatory proteins, tetR family Amir_2893 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_2893 PF14759 Reductase C-terminal Amir_2894 PF00067 Cytochrome P450 Amir_2895 PF00067 Cytochrome P450 Amir_2896 PF06722 Protein of unknown function (DUF1205) Amir_2896 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Amir_2897 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2897 PF00512 His Kinase A (phospho-acceptor) domain Amir_2900 PF00440 Bacterial regulatory proteins, tetR family Amir_2901 PF00550 Phosphopantetheine attachment site Amir_2901 PF00501 AMP-binding enzyme Amir_2901 PF13193 AMP-binding enzyme C-terminal domain Amir_2901 PF00668 Condensation domain Amir_2909 PF13569 Domain of unknown function (DUF4132) Amir_2910 PF00360 Phytochrome region Amir_2910 PF08446 PAS fold Amir_2910 PF00512 His Kinase A (phospho-acceptor) domain Amir_2910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_2910 PF01590 GAF domain Amir_2912 PF00072 Response regulator receiver domain Amir_2915 PF01638 HxlR-like helix-turn-helix Amir_2918 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2919 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2920 PF01547 Bacterial extracellular solute-binding protein Amir_2922 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Amir_2922 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amir_2923 PF00356 Bacterial regulatory proteins, lacI family Amir_2925 PF03704 Bacterial transcriptional activator domain Amir_2925 PF00931 NB-ARC domain Amir_2925 PF00486 Transcriptional regulatory protein, C terminal Amir_2933 PF17758 Proteasomal ATPase OB N-terminal domain Amir_2933 PF16450 Proteasomal ATPase OB C-terminal domain Amir_2933 PF00004 ATPase family associated with various cellular activities (AAA) Amir_2936 PF00486 Transcriptional regulatory protein, C terminal Amir_2936 PF03704 Bacterial transcriptional activator domain Amir_2936 PF00931 NB-ARC domain Amir_2954 PF03704 Bacterial transcriptional activator domain Amir_2954 PF00931 NB-ARC domain Amir_2954 PF00486 Transcriptional regulatory protein, C terminal Amir_2956 PF00931 NB-ARC domain Amir_2956 PF00486 Transcriptional regulatory protein, C terminal Amir_2956 PF03704 Bacterial transcriptional activator domain Amir_2959 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_2959 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Amir_2964 PF01653 NAD-dependent DNA ligase adenylation domain Amir_2964 PF12826 Helix-hairpin-helix motif Amir_2964 PF03120 NAD-dependent DNA ligase OB-fold domain Amir_2966 PF13569 Domain of unknown function (DUF4132) Amir_2967 PF00155 Aminotransferase class I and II Amir_2970 PF00561 alpha/beta hydrolase fold Amir_2973 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_2973 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_2976 PF00293 NUDIX domain Amir_2977 PF00440 Bacterial regulatory proteins, tetR family Amir_2978 PF00933 Glycosyl hydrolase family 3 N terminal domain Amir_2984 PF00528 Binding-protein-dependent transport system inner membrane component Amir_2986 PF01055 Glycosyl hydrolases family 31 Amir_2986 PF13802 Galactose mutarotase-like Amir_2988 PF00356 Bacterial regulatory proteins, lacI family Amir_2993 PF13649 Methyltransferase domain Amir_2996 PF00561 alpha/beta hydrolase fold Amir_2997 PF04978 Protein of unknown function (DUF664) Amir_3001 PF16859 Tetracyclin repressor-like, C-terminal domain Amir_3001 PF00440 Bacterial regulatory proteins, tetR family Amir_3003 PF13411 MerR HTH family regulatory protein Amir_3004 PF00072 Response regulator receiver domain Amir_3004 PF00196 Bacterial regulatory proteins, luxR family Amir_3006 PF12704 MacB-like periplasmic core domain Amir_3006 PF00005 ABC transporter Amir_3006 PF02687 FtsX-like permease family Amir_3007 PF12704 MacB-like periplasmic core domain Amir_3007 PF02687 FtsX-like permease family Amir_3007 PF00005 ABC transporter Amir_3016 PF08021 Siderophore-interacting FAD-binding domain Amir_3016 PF04954 Siderophore-interacting protein Amir_3018 PF02567 Phenazine biosynthesis-like protein Amir_3020 PF03358 NADPH-dependent FMN reductase Amir_3021 PF13569 Domain of unknown function (DUF4132) Amir_3024 PF00459 Inositol monophosphatase family Amir_3025 PF00005 ABC transporter Amir_3025 PF00664 ABC transporter transmembrane region Amir_3026 PF00664 ABC transporter transmembrane region Amir_3026 PF00005 ABC transporter Amir_3036 PF02589 LUD domain Amir_3037 PF11870 Domain of unknown function (DUF3390) Amir_3037 PF13183 4Fe-4S dicluster domain Amir_3037 PF02589 LUD domain Amir_3038 PF02754 Cysteine-rich domain Amir_3039 PF00392 Bacterial regulatory proteins, gntR family Amir_3039 PF07702 UTRA domain Amir_3040 PF00356 Bacterial regulatory proteins, lacI family Amir_3041 PF00005 ABC transporter Amir_3042 PF02653 Branched-chain amino acid transport system / permease component Amir_3043 PF02653 Branched-chain amino acid transport system / permease component Amir_3046 PF00596 Class II Aldolase and Adducin N-terminal domain Amir_3047 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Amir_3047 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Amir_3049 PF01979 Amidohydrolase family Amir_3051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_3051 PF03466 LysR substrate binding domain Amir_3054 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_3054 PF07730 Histidine kinase Amir_3054 PF05231 MASE1 Amir_3056 PF04542 Sigma-70 region 2 Amir_3056 PF08281 Sigma-70, region 4 Amir_3058 PF02656 Domain of unknown function (DUF202) Amir_3059 PF00067 Cytochrome P450 Amir_3062 PF01126 Heme oxygenase Amir_3066 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_3067 PF00528 Binding-protein-dependent transport system inner membrane component Amir_3068 PF00528 Binding-protein-dependent transport system inner membrane component Amir_3068 PF12911 N-terminal TM domain of oligopeptide transport permease C Amir_3069 PF00005 ABC transporter Amir_3069 PF09383 NIL domain Amir_3070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_3070 PF00005 ABC transporter Amir_3071 PF00733 Asparagine synthase Amir_3071 PF13537 Glutamine amidotransferase domain Amir_3074 PF00893 Small Multidrug Resistance protein Amir_3075 PF00202 Aminotransferase class-III Amir_3077 PF00171 Aldehyde dehydrogenase family Amir_3078 PF01717 Cobalamin-independent synthase, Catalytic domain Amir_3078 PF08267 Cobalamin-independent synthase, N-terminal domain Amir_3079 PF00891 O-methyltransferase domain Amir_3086 PF13340 Putative transposase of IS4/5 family (DUF4096) Amir_3089 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_3089 PF00672 HAMP domain Amir_3090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_3090 PF03466 LysR substrate binding domain Amir_3091 PF00892 EamA-like transporter family Amir_3093 PF07690 Major Facilitator Superfamily Amir_3099 PF00480 ROK family Amir_3102 PF05221 S-adenosyl-L-homocysteine hydrolase Amir_3102 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Amir_3103 PF02772 S-adenosylmethionine synthetase, central domain Amir_3103 PF00438 S-adenosylmethionine synthetase, N-terminal domain Amir_3103 PF02773 S-adenosylmethionine synthetase, C-terminal domain Amir_3106 PF17801 Alpha galactosidase C-terminal beta sandwich domain Amir_3106 PF16499 Alpha galactosidase A Amir_3108 PF00657 GDSL-like Lipase/Acylhydrolase Amir_3108 PF00404 Dockerin type I domain Amir_3110 PF00155 Aminotransferase class I and II Amir_3118 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family Amir_3119 PF00296 Luciferase-like monooxygenase Amir_3126 PF01565 FAD binding domain Amir_3126 PF09265 Cytokinin dehydrogenase 1, FAD and cytokinin binding Amir_3128 PF03466 LysR substrate binding domain Amir_3128 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_3131 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Amir_3131 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Amir_3132 PF00067 Cytochrome P450 Amir_3133 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Amir_3133 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Amir_3134 PF00202 Aminotransferase class-III Amir_3141 PF01791 DeoC/LacD family aldolase Amir_3142 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3142 PF00107 Zinc-binding dehydrogenase Amir_3144 PF01740 STAS domain Amir_3144 PF00916 Sulfate permease family Amir_3146 PF00067 Cytochrome P450 Amir_3148 PF01965 DJ-1/PfpI family Amir_3152 PF00149 Calcineurin-like phosphoesterase Amir_3157 PF03477 ATP cone domain Amir_3157 PF00317 Ribonucleotide reductase, all-alpha domain Amir_3157 PF02867 Ribonucleotide reductase, barrel domain Amir_3158 PF00268 Ribonucleotide reductase, small chain Amir_3159 PF01566 Natural resistance-associated macrophage protein Amir_3159 PF03358 NADPH-dependent FMN reductase Amir_3160 PF06114 IrrE N-terminal-like domain Amir_3162 PF03176 MMPL family Amir_3165 PF00378 Enoyl-CoA hydratase/isomerase Amir_3171 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3171 PF08990 Erythronolide synthase docking Amir_3171 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3171 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3171 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3171 PF00550 Phosphopantetheine attachment site Amir_3171 PF14765 Polyketide synthase dehydratase Amir_3171 PF00698 Acyl transferase domain Amir_3171 PF08659 KR domain Amir_3172 PF00440 Bacterial regulatory proteins, tetR family Amir_3174 PF00005 ABC transporter Amir_3174 PF00664 ABC transporter transmembrane region Amir_3175 PF00999 Sodium/hydrogen exchanger family Amir_3178 PF00196 Bacterial regulatory proteins, luxR family Amir_3179 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3179 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3179 PF08659 KR domain Amir_3179 PF18369 Polyketide synthase dimerisation element domain Amir_3179 PF08990 Erythronolide synthase docking Amir_3179 PF00698 Acyl transferase domain Amir_3179 PF00550 Phosphopantetheine attachment site Amir_3179 PF00975 Thioesterase domain Amir_3179 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3180 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3180 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3180 PF00698 Acyl transferase domain Amir_3180 PF00550 Phosphopantetheine attachment site Amir_3180 PF08659 KR domain Amir_3180 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3180 PF14765 Polyketide synthase dehydratase Amir_3181 PF00797 N-acetyltransferase Amir_3182 PF04072 Leucine carboxyl methyltransferase Amir_3183 PF01494 FAD binding domain Amir_3184 PF04820 Tryptophan halogenase Amir_3185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Amir_3185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amir_3186 PF00550 Phosphopantetheine attachment site Amir_3187 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_3187 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_3187 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_3189 PF01596 O-methyltransferase Amir_3191 PF01757 Acyltransferase family Amir_3192 PF03795 YCII-related domain Amir_3193 PF16861 Carbamoyltransferase C-terminus Amir_3193 PF02543 Carbamoyltransferase N-terminus Amir_3195 PF01220 Dehydroquinase class II Amir_3196 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Amir_3197 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3197 PF00698 Acyl transferase domain Amir_3197 PF00550 Phosphopantetheine attachment site Amir_3197 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3197 PF14765 Polyketide synthase dehydratase Amir_3197 PF08659 KR domain Amir_3197 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3198 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3198 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3198 PF00550 Phosphopantetheine attachment site Amir_3198 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3198 PF00698 Acyl transferase domain Amir_3198 PF14765 Polyketide synthase dehydratase Amir_3198 PF08659 KR domain Amir_3200 PF00106 short chain dehydrogenase Amir_3204 PF04539 Sigma-70 region 3 Amir_3204 PF00140 Sigma-70 factor, region 1.2 Amir_3204 PF04542 Sigma-70 region 2 Amir_3204 PF04545 Sigma-70, region 4 Amir_3213 PF03422 Carbohydrate binding module (family 6) Amir_3213 PF04616 Glycosyl hydrolases family 43 Amir_3214 PF00331 Glycosyl hydrolase family 10 Amir_3214 PF00652 Ricin-type beta-trefoil lectin domain Amir_3215 PF00553 Cellulose binding domain Amir_3215 PF01341 Glycosyl hydrolases family 6 Amir_3216 PF00041 Fibronectin type III domain Amir_3216 PF00150 Cellulase (glycosyl hydrolase family 5) Amir_3216 PF00553 Cellulose binding domain Amir_3218 PF07730 Histidine kinase Amir_3219 PF00196 Bacterial regulatory proteins, luxR family Amir_3219 PF00072 Response regulator receiver domain Amir_3222 PF00553 Cellulose binding domain Amir_3222 PF01341 Glycosyl hydrolases family 6 Amir_3224 PF09594 Glycosyltransferase family 87 Amir_3226 PF00248 Aldo/keto reductase family Amir_3228 PF02702 Osmosensitive K+ channel His kinase sensor domain Amir_3228 PF13493 Domain of unknown function (DUF4118) Amir_3228 PF00512 His Kinase A (phospho-acceptor) domain Amir_3228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_3228 PF00582 Universal stress protein family Amir_3229 PF02669 K+-transporting ATPase, c chain Amir_3231 PF03814 Potassium-transporting ATPase A subunit Amir_3234 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Amir_3234 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Amir_3244 PF05257 CHAP domain Amir_3244 PF01476 LysM domain Amir_3276 PF00067 Cytochrome P450 Amir_3277 PF00067 Cytochrome P450 Amir_3278 PF01596 O-methyltransferase Amir_3279 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Amir_3279 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amir_3280 PF00550 Phosphopantetheine attachment site Amir_3281 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_3281 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_3281 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_3283 PF16861 Carbamoyltransferase C-terminus Amir_3283 PF02543 Carbamoyltransferase N-terminus Amir_3285 PF00480 ROK family Amir_3286 PF01220 Dehydroquinase class II Amir_3287 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Amir_3288 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_3288 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_3289 PF13419 Haloacid dehalogenase-like hydrolase Amir_3290 PF01494 FAD binding domain Amir_3291 PF00797 N-acetyltransferase Amir_3292 PF00550 Phosphopantetheine attachment site Amir_3292 PF00698 Acyl transferase domain Amir_3292 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3292 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3292 PF14765 Polyketide synthase dehydratase Amir_3292 PF08990 Erythronolide synthase docking Amir_3292 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3292 PF08659 KR domain Amir_3292 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3293 PF00975 Thioesterase domain Amir_3293 PF18369 Polyketide synthase dimerisation element domain Amir_3293 PF08990 Erythronolide synthase docking Amir_3293 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3293 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3293 PF08659 KR domain Amir_3293 PF00550 Phosphopantetheine attachment site Amir_3293 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3293 PF00698 Acyl transferase domain Amir_3294 PF08659 KR domain Amir_3294 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3294 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3294 PF00698 Acyl transferase domain Amir_3294 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3294 PF08990 Erythronolide synthase docking Amir_3294 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3294 PF14765 Polyketide synthase dehydratase Amir_3294 PF00550 Phosphopantetheine attachment site Amir_3296 PF01761 3-dehydroquinate synthase Amir_3297 PF00196 Bacterial regulatory proteins, luxR family Amir_3301 PF03422 Carbohydrate binding module (family 6) Amir_3301 PF00553 Cellulose binding domain Amir_3301 PF03664 Glycosyl hydrolase family 62 Amir_3303 PF01341 Glycosyl hydrolases family 6 Amir_3303 PF00553 Cellulose binding domain Amir_3304 PF00356 Bacterial regulatory proteins, lacI family Amir_3307 PF00857 Isochorismatase family Amir_3308 PF00196 Bacterial regulatory proteins, luxR family Amir_3311 PF00106 short chain dehydrogenase Amir_3314 PF00072 Response regulator receiver domain Amir_3314 PF00196 Bacterial regulatory proteins, luxR family Amir_3315 PF07730 Histidine kinase Amir_3316 PF00561 alpha/beta hydrolase fold Amir_3318 PF12146 Serine aminopeptidase, S33 Amir_3318 PF13026 Protein of unknown function (DUF3887) Amir_3321 PF07728 AAA domain (dynein-related subfamily) Amir_3321 PF08406 CbbQ/NirQ/NorQ C-terminal Amir_3331 PF12833 Helix-turn-helix domain Amir_3334 PF00106 short chain dehydrogenase Amir_3335 PF00150 Cellulase (glycosyl hydrolase family 5) Amir_3335 PF18448 Carbohydrate binding domain Amir_3335 PF03442 Carbohydrate binding domain X2 Amir_3338 PF00356 Bacterial regulatory proteins, lacI family Amir_3340 PF01638 HxlR-like helix-turn-helix Amir_3345 PF00561 alpha/beta hydrolase fold Amir_3350 PF00106 short chain dehydrogenase Amir_3351 PF04226 Transglycosylase associated protein Amir_3352 PF00135 Carboxylesterase family Amir_3353 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Amir_3353 PF10996 Beta-Casp domain Amir_3353 PF00753 Metallo-beta-lactamase superfamily Amir_3356 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_3356 PF05231 MASE1 Amir_3356 PF07730 Histidine kinase Amir_3359 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3359 PF00107 Zinc-binding dehydrogenase Amir_3362 PF01872 RibD C-terminal domain Amir_3365 PF00248 Aldo/keto reductase family Amir_3366 PF12833 Helix-turn-helix domain Amir_3366 PF12852 Cupin Amir_3368 PF09364 XFP N-terminal domain Amir_3368 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Amir_3368 PF09363 XFP C-terminal domain Amir_3369 PF00871 Acetokinase family Amir_3376 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amir_3376 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Amir_3376 PF00205 Thiamine pyrophosphate enzyme, central domain Amir_3380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_3380 PF03466 LysR substrate binding domain Amir_3382 PF00356 Bacterial regulatory proteins, lacI family Amir_3383 PF01593 Flavin containing amine oxidoreductase Amir_3384 PF01968 Hydantoinase/oxoprolinase Amir_3384 PF05378 Hydantoinase/oxoprolinase N-terminal region Amir_3388 PF02525 Flavodoxin-like fold Amir_3394 PF09924 Uncharacterised conserved protein (DUF2156) Amir_3395 PF00756 Putative esterase Amir_3397 PF01979 Amidohydrolase family Amir_3398 PF03061 Thioesterase superfamily Amir_3402 PF00535 Glycosyl transferase family 2 Amir_3403 PF13397 RNA polymerase-binding protein Amir_3408 PF00265 Thymidine kinase Amir_3411 PF11700 Vacuole effluxer Atg22 like Amir_3414 PF00990 Diguanylate cyclase, GGDEF domain Amir_3414 PF08448 PAS fold Amir_3417 PF02735 Ku70/Ku80 beta-barrel domain Amir_3421 PF01145 SPFH domain / Band 7 family Amir_3423 PF01022 Bacterial regulatory protein, arsR family Amir_3424 PF01758 Sodium Bile acid symporter family Amir_3425 PF01451 Low molecular weight phosphotyrosine protein phosphatase Amir_3429 PF01425 Amidase Amir_3438 PF00557 Metallopeptidase family M24 Amir_3440 PF02082 Transcriptional regulator Amir_3441 PF01494 FAD binding domain Amir_3442 PF08220 DeoR-like helix-turn-helix domain Amir_3442 PF00455 DeoR C terminal sensor domain Amir_3443 PF00293 NUDIX domain Amir_3445 PF00929 Exonuclease Amir_3447 PF02899 Phage integrase, N-terminal SAM-like domain Amir_3447 PF00589 Phage integrase family Amir_3454 PF17676 LD-carboxypeptidase C-terminal domain Amir_3454 PF02016 LD-carboxypeptidase N-terminal domain Amir_3461 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_3461 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_3461 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_3463 PF00005 ABC transporter Amir_3463 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_3464 PF12911 N-terminal TM domain of oligopeptide transport permease C Amir_3464 PF00528 Binding-protein-dependent transport system inner membrane component Amir_3465 PF00528 Binding-protein-dependent transport system inner membrane component Amir_3466 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_3467 PF04951 D-aminopeptidase Amir_3468 PF07687 Peptidase dimerisation domain Amir_3468 PF01546 Peptidase family M20/M25/M40 Amir_3470 PF00356 Bacterial regulatory proteins, lacI family Amir_3473 PF00528 Binding-protein-dependent transport system inner membrane component Amir_3475 PF02899 Phage integrase, N-terminal SAM-like domain Amir_3475 PF00589 Phage integrase family Amir_3487 PF00248 Aldo/keto reductase family Amir_3490 PF00107 Zinc-binding dehydrogenase Amir_3490 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3492 PF00293 NUDIX domain Amir_3495 PF13472 GDSL-like Lipase/Acylhydrolase family Amir_3495 PF17996 Carbohydrate esterase 2 N-terminal Amir_3502 PF00149 Calcineurin-like phosphoesterase Amir_3504 PF01494 FAD binding domain Amir_3506 PF00149 Calcineurin-like phosphoesterase Amir_3508 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amir_3509 PF00069 Protein kinase domain Amir_3509 PF16918 Protein kinase G tetratricopeptide repeat Amir_3509 PF16919 Protein kinase G rubredoxin domain Amir_3511 PF01047 MarR family Amir_3516 PF00107 Zinc-binding dehydrogenase Amir_3516 PF16884 N-terminal domain of oxidoreductase Amir_3517 PF12833 Helix-turn-helix domain Amir_3517 PF14525 AraC-binding-like domain Amir_3518 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Amir_3518 PF00271 Helicase conserved C-terminal domain Amir_3518 PF04408 Helicase associated domain (HA2) Amir_3518 PF11898 Domain of unknown function (DUF3418) Amir_3518 PF00270 DEAD/DEAH box helicase Amir_3522 PF02673 Bacitracin resistance protein BacA Amir_3523 PF00296 Luciferase-like monooxygenase Amir_3524 PF00248 Aldo/keto reductase family Amir_3531 PF17760 UvrA interaction domain Amir_3531 PF00005 ABC transporter Amir_3531 PF17755 UvrA DNA-binding domain Amir_3533 PF00196 Bacterial regulatory proteins, luxR family Amir_3534 PF01614 Bacterial transcriptional regulator Amir_3534 PF09339 IclR helix-turn-helix domain Amir_3536 PF00150 Cellulase (glycosyl hydrolase family 5) Amir_3536 PF00553 Cellulose binding domain Amir_3547 PF07690 Major Facilitator Superfamily Amir_3551 PF00082 Subtilase family Amir_3551 PF05922 Peptidase inhibitor I9 Amir_3553 PF00535 Glycosyl transferase family 2 Amir_3554 PF13193 AMP-binding enzyme C-terminal domain Amir_3554 PF00501 AMP-binding enzyme Amir_3554 PF00550 Phosphopantetheine attachment site Amir_3558 PF04542 Sigma-70 region 2 Amir_3558 PF08281 Sigma-70, region 4 Amir_3559 PF03816 Cell envelope-related transcriptional attenuator domain Amir_3559 PF13399 LytR cell envelope-related transcriptional attenuator Amir_3561 PF00296 Luciferase-like monooxygenase Amir_3565 PF00440 Bacterial regulatory proteins, tetR family Amir_3565 PF17926 Tetracyclin repressor-like, C-terminal domain Amir_3566 PF00248 Aldo/keto reductase family Amir_3567 PF07859 alpha/beta hydrolase fold Amir_3568 PF13530 Sterol carrier protein domain Amir_3568 PF17668 Acetyltransferase (GNAT) domain Amir_3569 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain Amir_3569 PF04616 Glycosyl hydrolases family 43 Amir_3571 PF00486 Transcriptional regulatory protein, C terminal Amir_3571 PF00931 NB-ARC domain Amir_3571 PF03704 Bacterial transcriptional activator domain Amir_3574 PF00072 Response regulator receiver domain Amir_3574 PF00196 Bacterial regulatory proteins, luxR family Amir_3575 PF07690 Major Facilitator Superfamily Amir_3576 PF00067 Cytochrome P450 Amir_3577 PF00668 Condensation domain Amir_3577 PF13193 AMP-binding enzyme C-terminal domain Amir_3577 PF00501 AMP-binding enzyme Amir_3577 PF00550 Phosphopantetheine attachment site Amir_3578 PF00501 AMP-binding enzyme Amir_3578 PF13193 AMP-binding enzyme C-terminal domain Amir_3578 PF00975 Thioesterase domain Amir_3578 PF00668 Condensation domain Amir_3578 PF00550 Phosphopantetheine attachment site Amir_3579 PF03621 MbtH-like protein Amir_3581 PF00668 Condensation domain Amir_3581 PF13193 AMP-binding enzyme C-terminal domain Amir_3581 PF00501 AMP-binding enzyme Amir_3581 PF00550 Phosphopantetheine attachment site Amir_3582 PF13291 ACT domain Amir_3582 PF00291 Pyridoxal-phosphate dependent enzyme Amir_3589 PF01891 Cobalt uptake substrate-specific transmembrane region Amir_3590 PF02553 Cobalt transport protein component CbiN Amir_3592 PF00005 ABC transporter Amir_3595 PF06018 CodY GAF-like domain Amir_3595 PF17853 GGDEF-like domain Amir_3595 PF13556 PucR C-terminal helix-turn-helix domain Amir_3596 PF01266 FAD dependent oxidoreductase Amir_3597 PF01272 Transcription elongation factor, GreA/GreB, C-term Amir_3597 PF03449 Transcription elongation factor, N-terminal Amir_3600 PF00067 Cytochrome P450 Amir_3601 PF03621 MbtH-like protein Amir_3602 PF00550 Phosphopantetheine attachment site Amir_3602 PF13193 AMP-binding enzyme C-terminal domain Amir_3602 PF00501 AMP-binding enzyme Amir_3602 PF00668 Condensation domain Amir_3603 PF00005 ABC transporter Amir_3603 PF00664 ABC transporter transmembrane region Amir_3605 PF00720 Subtilisin inhibitor-like Amir_3612 PF00005 ABC transporter Amir_3613 PF05199 GMC oxidoreductase Amir_3615 PF00202 Aminotransferase class-III Amir_3616 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_3617 PF00171 Aldehyde dehydrogenase family Amir_3621 PF00171 Aldehyde dehydrogenase family Amir_3623 PF00501 AMP-binding enzyme Amir_3624 PF12464 Maltose acetyltransferase Amir_3624 PF00132 Bacterial transferase hexapeptide (six repeats) Amir_3625 PF03466 LysR substrate binding domain Amir_3625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_3630 PF08241 Methyltransferase domain Amir_3645 PF01580 FtsK/SpoIIIE family Amir_3645 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Amir_3645 PF17854 FtsK alpha domain Amir_3645 PF09397 Ftsk gamma domain Amir_3654 PF00248 Aldo/keto reductase family Amir_3662 PF00067 Cytochrome P450 Amir_3663 PF13302 Acetyltransferase (GNAT) domain Amir_3664 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3664 PF00107 Zinc-binding dehydrogenase Amir_3667 PF00664 ABC transporter transmembrane region Amir_3667 PF00005 ABC transporter Amir_3670 PF02543 Carbamoyltransferase N-terminus Amir_3670 PF16861 Carbamoyltransferase C-terminus Amir_3672 PF03621 MbtH-like protein Amir_3674 PF00550 Phosphopantetheine attachment site Amir_3674 PF13193 AMP-binding enzyme C-terminal domain Amir_3674 PF00668 Condensation domain Amir_3674 PF00501 AMP-binding enzyme Amir_3675 PF00501 AMP-binding enzyme Amir_3675 PF13193 AMP-binding enzyme C-terminal domain Amir_3675 PF00668 Condensation domain Amir_3675 PF00550 Phosphopantetheine attachment site Amir_3676 PF00733 Asparagine synthase Amir_3676 PF13537 Glutamine amidotransferase domain Amir_3678 PF01370 NAD dependent epimerase/dehydratase family Amir_3679 PF00668 Condensation domain Amir_3679 PF13193 AMP-binding enzyme C-terminal domain Amir_3679 PF00668 Condensation domain Amir_3679 PF00550 Phosphopantetheine attachment site Amir_3679 PF00501 AMP-binding enzyme Amir_3679 PF00501 AMP-binding enzyme Amir_3679 PF13193 AMP-binding enzyme C-terminal domain Amir_3679 PF00550 Phosphopantetheine attachment site Amir_3680 PF00975 Thioesterase domain Amir_3680 PF00668 Condensation domain Amir_3680 PF13193 AMP-binding enzyme C-terminal domain Amir_3680 PF00550 Phosphopantetheine attachment site Amir_3680 PF00501 AMP-binding enzyme Amir_3681 PF00668 Condensation domain Amir_3681 PF13193 AMP-binding enzyme C-terminal domain Amir_3681 PF00501 AMP-binding enzyme Amir_3681 PF00550 Phosphopantetheine attachment site Amir_3682 PF00698 Acyl transferase domain Amir_3682 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3682 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3682 PF00550 Phosphopantetheine attachment site Amir_3682 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3682 PF00668 Condensation domain Amir_3683 PF00501 AMP-binding enzyme Amir_3683 PF13193 AMP-binding enzyme C-terminal domain Amir_3683 PF00668 Condensation domain Amir_3683 PF00550 Phosphopantetheine attachment site Amir_3684 PF00668 Condensation domain Amir_3684 PF13193 AMP-binding enzyme C-terminal domain Amir_3684 PF00501 AMP-binding enzyme Amir_3684 PF00550 Phosphopantetheine attachment site Amir_3685 PF01804 Penicillin amidase Amir_3687 PF01638 HxlR-like helix-turn-helix Amir_3692 PF00067 Cytochrome P450 Amir_3695 PF00664 ABC transporter transmembrane region Amir_3695 PF00005 ABC transporter Amir_3696 PF00196 Bacterial regulatory proteins, luxR family Amir_3696 PF00072 Response regulator receiver domain Amir_3697 PF13185 GAF domain Amir_3697 PF07730 Histidine kinase Amir_3697 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_3698 PF00144 Beta-lactamase Amir_3699 PF01494 FAD binding domain Amir_3700 PF00440 Bacterial regulatory proteins, tetR family Amir_3700 PF08361 MAATS-type transcriptional repressor, C-terminal region Amir_3702 PF01970 Tripartite tricarboxylate transporter TctA family Amir_3705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_3705 PF00989 PAS fold Amir_3705 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Amir_3705 PF17203 Single cache domain 3 Amir_3706 PF00072 Response regulator receiver domain Amir_3706 PF08769 Sporulation initiation factor Spo0A C terminal Amir_3708 PF00128 Alpha amylase, catalytic domain Amir_3708 PF16657 Maltogenic Amylase, C-terminal domain Amir_3709 PF00296 Luciferase-like monooxygenase Amir_3711 PF00440 Bacterial regulatory proteins, tetR family Amir_3711 PF17932 Tetracyclin repressor-like, C-terminal domain Amir_3715 PF04186 FxsA cytoplasmic membrane protein Amir_3716 PF04055 Radical SAM superfamily Amir_3716 PF12544 Lysine-2,3-aminomutase Amir_3724 PF00115 Cytochrome C and Quinol oxidase polypeptide I Amir_3727 PF00005 ABC transporter Amir_3727 PF17755 UvrA DNA-binding domain Amir_3727 PF17760 UvrA interaction domain Amir_3730 PF07005 Sugar-binding N-terminal domain Amir_3730 PF17042 Nucleotide-binding C-terminal domain Amir_3731 PF00596 Class II Aldolase and Adducin N-terminal domain Amir_3732 PF00455 DeoR C terminal sensor domain Amir_3732 PF08220 DeoR-like helix-turn-helix domain Amir_3735 PF01699 Sodium/calcium exchanger protein Amir_3737 PF00931 NB-ARC domain Amir_3737 PF03704 Bacterial transcriptional activator domain Amir_3737 PF00486 Transcriptional regulatory protein, C terminal Amir_3739 PF00072 Response regulator receiver domain Amir_3740 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amir_3740 PF00072 Response regulator receiver domain Amir_3740 PF00512 His Kinase A (phospho-acceptor) domain Amir_3740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_3742 PF13581 Histidine kinase-like ATPase domain Amir_3743 PF01740 STAS domain Amir_3744 PF08678 Rsbr N terminal Amir_3744 PF01740 STAS domain Amir_3746 PF05199 GMC oxidoreductase Amir_3747 PF00743 Flavin-binding monooxygenase-like Amir_3748 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term Amir_3748 PF12833 Helix-turn-helix domain Amir_3750 PF04616 Glycosyl hydrolases family 43 Amir_3754 PF00005 ABC transporter Amir_3754 PF00664 ABC transporter transmembrane region Amir_3756 PF00664 ABC transporter transmembrane region Amir_3756 PF00005 ABC transporter Amir_3757 PF16859 Tetracyclin repressor-like, C-terminal domain Amir_3757 PF00440 Bacterial regulatory proteins, tetR family Amir_3763 PF13411 MerR HTH family regulatory protein Amir_3766 PF03793 PASTA domain Amir_3766 PF00069 Protein kinase domain Amir_3767 PF00107 Zinc-binding dehydrogenase Amir_3767 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3768 PF00753 Metallo-beta-lactamase superfamily Amir_3771 PF00282 Pyridoxal-dependent decarboxylase conserved domain Amir_3794 PF00709 Adenylosuccinate synthetase Amir_3796 PF16499 Alpha galactosidase A Amir_3796 PF17801 Alpha galactosidase C-terminal beta sandwich domain Amir_3798 PF05922 Peptidase inhibitor I9 Amir_3798 PF00082 Subtilase family Amir_3799 PF01638 HxlR-like helix-turn-helix Amir_3800 PF02780 Transketolase, C-terminal domain Amir_3800 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Amir_3800 PF02779 Transketolase, pyrimidine binding domain Amir_3804 PF02082 Transcriptional regulator Amir_3805 PF00175 Oxidoreductase NAD-binding domain Amir_3805 PF00970 Oxidoreductase FAD-binding domain Amir_3805 PF00042 Globin Amir_3809 PF01593 Flavin containing amine oxidoreductase Amir_3818 PF01494 FAD binding domain Amir_3819 PF00248 Aldo/keto reductase family Amir_3823 PF01594 AI-2E family transporter Amir_3826 PF02627 Carboxymuconolactone decarboxylase family Amir_3827 PF00501 AMP-binding enzyme Amir_3827 PF13193 AMP-binding enzyme C-terminal domain Amir_3829 PF01728 FtsJ-like methyltransferase Amir_3830 PF16177 Acetyl-coenzyme A synthetase N-terminus Amir_3830 PF13193 AMP-binding enzyme C-terminal domain Amir_3830 PF00501 AMP-binding enzyme Amir_3834 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Amir_3835 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Amir_3838 PF01546 Peptidase family M20/M25/M40 Amir_3840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_3840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_3842 PF13499 EF-hand domain pair Amir_3843 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Amir_3843 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Amir_3843 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Amir_3846 PF00440 Bacterial regulatory proteins, tetR family Amir_3846 PF17754 MftR C-terminal domain Amir_3849 PF07971 Glycosyl hydrolase family 92 Amir_3849 PF17678 Glycosyl hydrolase family 92 N-terminal domain Amir_3851 PF12697 Alpha/beta hydrolase family Amir_3856 PF07690 Major Facilitator Superfamily Amir_3857 PF01252 Signal peptidase (SPase) II Amir_3864 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Amir_3869 PF13472 GDSL-like Lipase/Acylhydrolase family Amir_3871 PF00072 Response regulator receiver domain Amir_3871 PF00486 Transcriptional regulatory protein, C terminal Amir_3873 PF00589 Phage integrase family Amir_3873 PF02899 Phage integrase, N-terminal SAM-like domain Amir_3887 PF00106 short chain dehydrogenase Amir_3891 PF00501 AMP-binding enzyme Amir_3891 PF13193 AMP-binding enzyme C-terminal domain Amir_3891 PF00668 Condensation domain Amir_3891 PF00550 Phosphopantetheine attachment site Amir_3892 PF00501 AMP-binding enzyme Amir_3892 PF13193 AMP-binding enzyme C-terminal domain Amir_3892 PF00668 Condensation domain Amir_3892 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3892 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3892 PF08659 KR domain Amir_3892 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3892 PF14765 Polyketide synthase dehydratase Amir_3892 PF00550 Phosphopantetheine attachment site Amir_3894 PF00067 Cytochrome P450 Amir_3897 PF03033 Glycosyltransferase family 28 N-terminal domain Amir_3900 PF03466 LysR substrate binding domain Amir_3900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_3903 PF00698 Acyl transferase domain Amir_3903 PF08659 KR domain Amir_3903 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3903 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_3903 PF16197 Ketoacyl-synthetase C-terminal extension Amir_3903 PF00550 Phosphopantetheine attachment site Amir_3903 PF14765 Polyketide synthase dehydratase Amir_3903 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_3907 PF00704 Glycosyl hydrolases family 18 Amir_3911 PF01032 FecCD transport family Amir_3914 PF00005 ABC transporter Amir_3915 PF01032 FecCD transport family Amir_3918 PF10100 Staphylopine dehydrogenase Amir_3924 PF02543 Carbamoyltransferase N-terminus Amir_3924 PF16861 Carbamoyltransferase C-terminus Amir_3926 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Amir_3926 PF04616 Glycosyl hydrolases family 43 Amir_3930 PF01266 FAD dependent oxidoreductase Amir_3931 PF00248 Aldo/keto reductase family Amir_3933 PF16861 Carbamoyltransferase C-terminus Amir_3933 PF02543 Carbamoyltransferase N-terminus Amir_3934 PF08241 Methyltransferase domain Amir_3938 PF01323 DSBA-like thioredoxin domain Amir_3941 PF01022 Bacterial regulatory protein, arsR family Amir_3944 PF04616 Glycosyl hydrolases family 43 Amir_3945 PF00248 Aldo/keto reductase family Amir_3947 PF00072 Response regulator receiver domain Amir_3947 PF00196 Bacterial regulatory proteins, luxR family Amir_3948 PF07690 Major Facilitator Superfamily Amir_3949 PF00440 Bacterial regulatory proteins, tetR family Amir_3954 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_3954 PF00512 His Kinase A (phospho-acceptor) domain Amir_3954 PF00072 Response regulator receiver domain Amir_3954 PF08448 PAS fold Amir_3954 PF13426 PAS domain Amir_3958 PF00544 Pectate lyase Amir_3959 PF10503 Esterase PHB depolymerase Amir_3961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_3964 PF08240 Alcohol dehydrogenase GroES-like domain Amir_3964 PF00107 Zinc-binding dehydrogenase Amir_3972 PF01494 FAD binding domain Amir_3974 PF00717 Peptidase S24-like Amir_3974 PF01726 LexA DNA binding domain Amir_3975 PF00440 Bacterial regulatory proteins, tetR family Amir_3979 PF00440 Bacterial regulatory proteins, tetR family Amir_3980 PF00925 GTP cyclohydrolase II Amir_3982 PF01872 RibD C-terminal domain Amir_3982 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Amir_3983 PF01546 Peptidase family M20/M25/M40 Amir_3983 PF07687 Peptidase dimerisation domain Amir_3989 PF13409 Glutathione S-transferase, N-terminal domain Amir_3994 PF00561 alpha/beta hydrolase fold Amir_3995 PF02224 Cytidylate kinase Amir_4000 PF05231 MASE1 Amir_4000 PF07730 Histidine kinase Amir_4000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4001 PF00072 Response regulator receiver domain Amir_4001 PF00196 Bacterial regulatory proteins, luxR family Amir_4003 PF00975 Thioesterase domain Amir_4005 PF01494 FAD binding domain Amir_4009 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_4009 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_4012 PF08713 DNA alkylation repair enzyme Amir_4013 PF12146 Serine aminopeptidase, S33 Amir_4014 PF00486 Transcriptional regulatory protein, C terminal Amir_4015 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Amir_4015 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Amir_4016 PF01053 Cys/Met metabolism PLP-dependent enzyme Amir_4017 PF00106 short chain dehydrogenase Amir_4019 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4019 PF00698 Acyl transferase domain Amir_4019 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4019 PF08659 KR domain Amir_4019 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4019 PF14765 Polyketide synthase dehydratase Amir_4019 PF00550 Phosphopantetheine attachment site Amir_4021 PF00933 Glycosyl hydrolase family 3 N terminal domain Amir_4028 PF00069 Protein kinase domain Amir_4031 PF16483 Beta-1,3-glucanase Amir_4031 PF00652 Ricin-type beta-trefoil lectin domain Amir_4032 PF00668 Condensation domain Amir_4032 PF13193 AMP-binding enzyme C-terminal domain Amir_4032 PF00501 AMP-binding enzyme Amir_4032 PF00550 Phosphopantetheine attachment site Amir_4033 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_4034 PF01070 FMN-dependent dehydrogenase Amir_4036 PF00999 Sodium/hydrogen exchanger family Amir_4038 PF00512 His Kinase A (phospho-acceptor) domain Amir_4038 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4038 PF00672 HAMP domain Amir_4042 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amir_4042 PF13378 Enolase C-terminal domain-like Amir_4045 PF00005 ABC transporter Amir_4046 PF00664 ABC transporter transmembrane region Amir_4046 PF04954 Siderophore-interacting protein Amir_4046 PF08021 Siderophore-interacting FAD-binding domain Amir_4046 PF00005 ABC transporter Amir_4049 PF00005 ABC transporter Amir_4051 PF00196 Bacterial regulatory proteins, luxR family Amir_4051 PF00072 Response regulator receiver domain Amir_4052 PF07730 Histidine kinase Amir_4052 PF05231 MASE1 Amir_4052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4058 PF00753 Metallo-beta-lactamase superfamily Amir_4065 PF18665 Tetracyclin repressor-like, C-terminal domain Amir_4065 PF00440 Bacterial regulatory proteins, tetR family Amir_4068 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4068 PF00512 His Kinase A (phospho-acceptor) domain Amir_4068 PF00989 PAS fold Amir_4068 PF16736 Single Cache-like Amir_4069 PF00072 Response regulator receiver domain Amir_4069 PF00486 Transcriptional regulatory protein, C terminal Amir_4071 PF12704 MacB-like periplasmic core domain Amir_4071 PF00005 ABC transporter Amir_4071 PF02687 FtsX-like permease family Amir_4072 PF12704 MacB-like periplasmic core domain Amir_4072 PF02687 FtsX-like permease family Amir_4075 PF00266 Aminotransferase class-V Amir_4076 PF05199 GMC oxidoreductase Amir_4076 PF00732 GMC oxidoreductase Amir_4077 PF16864 Dimerisation domain Amir_4077 PF00891 O-methyltransferase domain Amir_4081 PF01613 Flavin reductase like domain Amir_4083 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4083 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4083 PF00550 Phosphopantetheine attachment site Amir_4083 PF00698 Acyl transferase domain Amir_4083 PF08659 KR domain Amir_4083 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4084 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Amir_4086 PF07690 Major Facilitator Superfamily Amir_4087 PF01638 HxlR-like helix-turn-helix Amir_4088 PF00561 alpha/beta hydrolase fold Amir_4089 PF09594 Glycosyltransferase family 87 Amir_4090 PF00535 Glycosyl transferase family 2 Amir_4092 PF06441 Epoxide hydrolase N terminus Amir_4094 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_4094 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_4097 PF03109 ABC1 family Amir_4099 PF00106 short chain dehydrogenase Amir_4100 PF05199 GMC oxidoreductase Amir_4100 PF00732 GMC oxidoreductase Amir_4102 PF00067 Cytochrome P450 Amir_4104 PF12833 Helix-turn-helix domain Amir_4104 PF02311 AraC-like ligand binding domain Amir_4107 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4107 PF00107 Zinc-binding dehydrogenase Amir_4109 PF01613 Flavin reductase like domain Amir_4115 PF13193 AMP-binding enzyme C-terminal domain Amir_4115 PF00501 AMP-binding enzyme Amir_4116 PF00378 Enoyl-CoA hydratase/isomerase Amir_4119 PF12833 Helix-turn-helix domain Amir_4119 PF02311 AraC-like ligand binding domain Amir_4123 PF02896 PEP-utilising enzyme, TIM barrel domain Amir_4123 PF00391 PEP-utilising enzyme, mobile domain Amir_4123 PF05524 PEP-utilising enzyme, N-terminal Amir_4125 PF01799 [2Fe-2S] binding domain Amir_4125 PF00111 2Fe-2S iron-sulfur cluster binding domain Amir_4127 PF00176 SNF2 family N-terminal domain Amir_4127 PF00271 Helicase conserved C-terminal domain Amir_4127 PF04434 SWIM zinc finger Amir_4128 PF00176 SNF2 family N-terminal domain Amir_4128 PF00271 Helicase conserved C-terminal domain Amir_4130 PF00356 Bacterial regulatory proteins, lacI family Amir_4132 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amir_4132 PF13378 Enolase C-terminal domain-like Amir_4135 PF01494 FAD binding domain Amir_4137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4137 PF00672 HAMP domain Amir_4137 PF00512 His Kinase A (phospho-acceptor) domain Amir_4138 PF00486 Transcriptional regulatory protein, C terminal Amir_4138 PF00072 Response regulator receiver domain Amir_4144 PF02678 Pirin Amir_4144 PF05726 Pirin C-terminal cupin domain Amir_4148 PF00561 alpha/beta hydrolase fold Amir_4152 PF00150 Cellulase (glycosyl hydrolase family 5) Amir_4152 PF02013 Cellulose or protein binding domain Amir_4158 PF01625 Peptide methionine sulfoxide reductase Amir_4160 PF02515 CoA-transferase family III Amir_4161 PF01970 Tripartite tricarboxylate transporter TctA family Amir_4163 PF03401 Tripartite tricarboxylate transporter family receptor Amir_4164 PF01614 Bacterial transcriptional regulator Amir_4164 PF09339 IclR helix-turn-helix domain Amir_4165 PF03737 Aldolase/RraA Amir_4166 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Amir_4166 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amir_4166 PF01842 ACT domain Amir_4173 PF03575 Peptidase family S51 Amir_4174 PF00069 Protein kinase domain Amir_4177 PF03211 Pectate lyase Amir_4179 PF01047 MarR family Amir_4181 PF00557 Metallopeptidase family M24 Amir_4182 PF00486 Transcriptional regulatory protein, C terminal Amir_4182 PF00931 NB-ARC domain Amir_4182 PF03704 Bacterial transcriptional activator domain Amir_4183 PF10635 DisA bacterial checkpoint controller linker region Amir_4183 PF02457 DisA bacterial checkpoint controller nucleotide-binding Amir_4185 PF00795 Carbon-nitrogen hydrolase Amir_4187 PF00106 short chain dehydrogenase Amir_4189 PF00561 alpha/beta hydrolase fold Amir_4191 PF13426 PAS domain Amir_4191 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_4191 PF00672 HAMP domain Amir_4192 PF01475 Ferric uptake regulator family Amir_4193 PF00141 Peroxidase Amir_4194 PF05922 Peptidase inhibitor I9 Amir_4194 PF00082 Subtilase family Amir_4195 PF00082 Subtilase family Amir_4195 PF05922 Peptidase inhibitor I9 Amir_4196 PF04650 YSIRK type signal peptide Amir_4196 PF00746 LPXTG cell wall anchor motif Amir_4196 PF17210 SdrD B-like domain Amir_4196 PF17961 Bacterial Ig domain Amir_4198 PF01095 Pectinesterase Amir_4199 PF00544 Pectate lyase Amir_4201 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amir_4203 PF01494 FAD binding domain Amir_4204 PF00202 Aminotransferase class-III Amir_4206 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Amir_4208 PF08264 Anticodon-binding domain of tRNA Amir_4208 PF09334 tRNA synthetases class I (M) Amir_4208 PF01588 Putative tRNA binding domain Amir_4210 PF00892 EamA-like transporter family Amir_4211 PF01494 FAD binding domain Amir_4213 PF13193 AMP-binding enzyme C-terminal domain Amir_4213 PF00501 AMP-binding enzyme Amir_4215 PF00501 AMP-binding enzyme Amir_4215 PF00550 Phosphopantetheine attachment site Amir_4215 PF00668 Condensation domain Amir_4215 PF13193 AMP-binding enzyme C-terminal domain Amir_4218 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4218 PF03466 LysR substrate binding domain Amir_4219 PF00459 Inositol monophosphatase family Amir_4225 PF00150 Cellulase (glycosyl hydrolase family 5) Amir_4228 PF00916 Sulfate permease family Amir_4228 PF01740 STAS domain Amir_4233 PF01243 Pyridoxamine 5'-phosphate oxidase Amir_4234 PF04072 Leucine carboxyl methyltransferase Amir_4235 PF00067 Cytochrome P450 Amir_4236 PF00271 Helicase conserved C-terminal domain Amir_4236 PF09382 RQC domain Amir_4236 PF00270 DEAD/DEAH box helicase Amir_4236 PF16124 RecQ zinc-binding Amir_4236 PF00570 HRDC domain Amir_4237 PF00457 Glycosyl hydrolases family 11 Amir_4238 PF02785 Biotin carboxylase C-terminal domain Amir_4238 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amir_4238 PF00289 Biotin carboxylase, N-terminal domain Amir_4239 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4240 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4241 PF13416 Bacterial extracellular solute-binding protein Amir_4243 PF00248 Aldo/keto reductase family Amir_4246 PF03466 LysR substrate binding domain Amir_4246 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4247 PF00106 short chain dehydrogenase Amir_4251 PF00106 short chain dehydrogenase Amir_4253 PF12464 Maltose acetyltransferase Amir_4253 PF14602 Hexapeptide repeat of succinyl-transferase Amir_4256 PF01820 D-ala D-ala ligase N-terminus Amir_4256 PF07478 D-ala D-ala ligase C-terminus Amir_4258 PF01596 O-methyltransferase Amir_4259 PF01761 3-dehydroquinate synthase Amir_4260 PF00196 Bacterial regulatory proteins, luxR family Amir_4260 PF00072 Response regulator receiver domain Amir_4261 PF00672 HAMP domain Amir_4261 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4261 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Amir_4261 PF07730 Histidine kinase Amir_4265 PF13569 Domain of unknown function (DUF4132) Amir_4272 PF00364 Biotin-requiring enzyme Amir_4272 PF00561 alpha/beta hydrolase fold Amir_4277 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Amir_4278 PF00440 Bacterial regulatory proteins, tetR family Amir_4280 PF01554 MatE Amir_4283 PF01022 Bacterial regulatory protein, arsR family Amir_4286 PF01022 Bacterial regulatory protein, arsR family Amir_4287 PF03239 Iron permease FTR1 family Amir_4288 PF09375 Imelysin Amir_4288 PF13473 Cupredoxin-like domain Amir_4289 PF10518 TAT (twin-arginine translocation) pathway signal sequence Amir_4289 PF04261 Dyp-type peroxidase family Amir_4292 PF06441 Epoxide hydrolase N terminus Amir_4293 PF00005 ABC transporter Amir_4294 PF01032 FecCD transport family Amir_4295 PF01032 FecCD transport family Amir_4296 PF01497 Periplasmic binding protein Amir_4297 PF02983 Alpha-lytic protease prodomain Amir_4300 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Amir_4300 PF01276 Orn/Lys/Arg decarboxylase, major domain Amir_4306 PF00581 Rhodanese-like domain Amir_4307 PF02913 FAD linked oxidases, C-terminal domain Amir_4307 PF01565 FAD binding domain Amir_4310 PF01613 Flavin reductase like domain Amir_4311 PF03466 LysR substrate binding domain Amir_4311 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4312 PF00296 Luciferase-like monooxygenase Amir_4313 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_4313 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_4313 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_4315 PF01965 DJ-1/PfpI family Amir_4317 PF12833 Helix-turn-helix domain Amir_4320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_4321 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4322 PF12911 N-terminal TM domain of oligopeptide transport permease C Amir_4322 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4323 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_4323 PF00005 ABC transporter Amir_4324 PF17961 Bacterial Ig domain Amir_4324 PF00746 LPXTG cell wall anchor motif Amir_4324 PF17210 SdrD B-like domain Amir_4324 PF10425 C-terminus of bacterial fibrinogen-binding adhesin Amir_4324 PF04650 YSIRK type signal peptide Amir_4331 PF01374 Glycosyl hydrolase family 46 Amir_4332 PF00072 Response regulator receiver domain Amir_4333 PF00890 FAD binding domain Amir_4335 PF01037 Lrp/AsnC ligand binding domain Amir_4337 PF03741 Integral membrane protein TerC family Amir_4338 PF00440 Bacterial regulatory proteins, tetR family Amir_4338 PF16295 Tetracyclin repressor-like, C-terminal domain Amir_4339 PF01494 FAD binding domain Amir_4340 PF07690 Major Facilitator Superfamily Amir_4342 PF00999 Sodium/hydrogen exchanger family Amir_4345 PF07690 Major Facilitator Superfamily Amir_4351 PF00072 Response regulator receiver domain Amir_4351 PF00486 Transcriptional regulatory protein, C terminal Amir_4352 PF00512 His Kinase A (phospho-acceptor) domain Amir_4352 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4353 PF00221 Aromatic amino acid lyase Amir_4355 PF13193 AMP-binding enzyme C-terminal domain Amir_4355 PF00501 AMP-binding enzyme Amir_4356 PF00550 Phosphopantetheine attachment site Amir_4356 PF08659 KR domain Amir_4356 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4356 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4356 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4356 PF14765 Polyketide synthase dehydratase Amir_4356 PF00698 Acyl transferase domain Amir_4357 PF00698 Acyl transferase domain Amir_4357 PF14765 Polyketide synthase dehydratase Amir_4357 PF08990 Erythronolide synthase docking Amir_4357 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4357 PF00550 Phosphopantetheine attachment site Amir_4357 PF08659 KR domain Amir_4357 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4357 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4357 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4358 PF01494 FAD binding domain Amir_4359 PF14765 Polyketide synthase dehydratase Amir_4359 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4359 PF00698 Acyl transferase domain Amir_4359 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4359 PF08990 Erythronolide synthase docking Amir_4359 PF08659 KR domain Amir_4359 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4359 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4359 PF00550 Phosphopantetheine attachment site Amir_4360 PF06722 Protein of unknown function (DUF1205) Amir_4361 PF06722 Protein of unknown function (DUF1205) Amir_4362 PF13649 Methyltransferase domain Amir_4367 PF03060 Nitronate monooxygenase Amir_4368 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_4368 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_4368 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_4370 PF00501 AMP-binding enzyme Amir_4371 PF02803 Thiolase, C-terminal domain Amir_4371 PF00108 Thiolase, N-terminal domain Amir_4372 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Amir_4372 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amir_4372 PF00378 Enoyl-CoA hydratase/isomerase Amir_4373 PF00440 Bacterial regulatory proteins, tetR family Amir_4373 PF08361 MAATS-type transcriptional repressor, C-terminal region Amir_4374 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) Amir_4375 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) Amir_4376 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Amir_4376 PF00034 Cytochrome c Amir_4376 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Amir_4377 PF01799 [2Fe-2S] binding domain Amir_4377 PF00111 2Fe-2S iron-sulfur cluster binding domain Amir_4378 PF13411 MerR HTH family regulatory protein Amir_4379 PF00348 Polyprenyl synthetase Amir_4380 PF01040 UbiA prenyltransferase family Amir_4381 PF01494 FAD binding domain Amir_4382 PF00891 O-methyltransferase domain Amir_4383 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Amir_4384 PF00067 Cytochrome P450 Amir_4386 PF00155 Aminotransferase class I and II Amir_4392 PF00188 Cysteine-rich secretory protein family Amir_4394 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain Amir_4395 PF00440 Bacterial regulatory proteins, tetR family Amir_4395 PF16925 Tetracyclin repressor-like, C-terminal domain Amir_4399 PF00440 Bacterial regulatory proteins, tetR family Amir_4400 PF13411 MerR HTH family regulatory protein Amir_4403 PF01161 Phosphatidylethanolamine-binding protein Amir_4404 PF13569 Domain of unknown function (DUF4132) Amir_4408 PF00534 Glycosyl transferases group 1 Amir_4408 PF13439 Glycosyltransferase Family 4 Amir_4414 PF01783 Ribosomal L32p protein family Amir_4415 PF01197 Ribosomal protein L31 Amir_4416 PF02492 CobW/HypB/UreG, nucleotide-binding domain Amir_4416 PF07683 Cobalamin synthesis protein cobW C-terminal domain Amir_4417 PF00199 Catalase Amir_4417 PF06628 Catalase-related immune-responsive Amir_4418 PF02540 NAD synthase Amir_4418 PF00117 Glutamine amidotransferase class-I Amir_4418 PF00958 GMP synthase C terminal domain Amir_4419 PF03475 3-alpha domain Amir_4419 PF03473 MOSC domain Amir_4423 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4423 PF00107 Zinc-binding dehydrogenase Amir_4425 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4425 PF00107 Zinc-binding dehydrogenase Amir_4428 PF05368 NmrA-like family Amir_4429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4429 PF03466 LysR substrate binding domain Amir_4431 PF08990 Erythronolide synthase docking Amir_4431 PF00698 Acyl transferase domain Amir_4431 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4431 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4431 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4431 PF08659 KR domain Amir_4431 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4431 PF14765 Polyketide synthase dehydratase Amir_4431 PF00550 Phosphopantetheine attachment site Amir_4433 PF00072 Response regulator receiver domain Amir_4433 PF00196 Bacterial regulatory proteins, luxR family Amir_4434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4434 PF07730 Histidine kinase Amir_4436 PF01593 Flavin containing amine oxidoreductase Amir_4437 PF00950 ABC 3 transport family Amir_4438 PF00005 ABC transporter Amir_4439 PF01297 Zinc-uptake complex component A periplasmic Amir_4440 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4440 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4440 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4440 PF14765 Polyketide synthase dehydratase Amir_4440 PF08659 KR domain Amir_4440 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4440 PF00550 Phosphopantetheine attachment site Amir_4440 PF00698 Acyl transferase domain Amir_4441 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4441 PF14765 Polyketide synthase dehydratase Amir_4441 PF00698 Acyl transferase domain Amir_4441 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4441 PF00550 Phosphopantetheine attachment site Amir_4441 PF08659 KR domain Amir_4441 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4441 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4441 PF14765 Polyketide synthase dehydratase Amir_4441 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4441 PF00550 Phosphopantetheine attachment site Amir_4441 PF08659 KR domain Amir_4441 PF00698 Acyl transferase domain Amir_4441 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4442 PF00550 Phosphopantetheine attachment site Amir_4442 PF08659 KR domain Amir_4442 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4442 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4442 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4442 PF14765 Polyketide synthase dehydratase Amir_4442 PF00698 Acyl transferase domain Amir_4443 PF00698 Acyl transferase domain Amir_4443 PF00550 Phosphopantetheine attachment site Amir_4443 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4443 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4443 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4443 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4443 PF08659 KR domain Amir_4443 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4443 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4443 PF14765 Polyketide synthase dehydratase Amir_4443 PF14765 Polyketide synthase dehydratase Amir_4443 PF00698 Acyl transferase domain Amir_4443 PF08659 KR domain Amir_4443 PF00550 Phosphopantetheine attachment site Amir_4445 PF00202 Aminotransferase class-III Amir_4448 PF01613 Flavin reductase like domain Amir_4451 PF03704 Bacterial transcriptional activator domain Amir_4451 PF00486 Transcriptional regulatory protein, C terminal Amir_4452 PF00196 Bacterial regulatory proteins, luxR family Amir_4453 PF01593 Flavin containing amine oxidoreductase Amir_4454 PF05368 NmrA-like family Amir_4456 PF01925 Sulfite exporter TauE/SafE Amir_4459 PF00106 short chain dehydrogenase Amir_4465 PF00970 Oxidoreductase FAD-binding domain Amir_4465 PF00111 2Fe-2S iron-sulfur cluster binding domain Amir_4465 PF00175 Oxidoreductase NAD-binding domain Amir_4468 PF00501 AMP-binding enzyme Amir_4472 PF00440 Bacterial regulatory proteins, tetR family Amir_4473 PF00881 Nitroreductase family Amir_4477 PF00069 Protein kinase domain Amir_4477 PF03793 PASTA domain Amir_4479 PF00107 Zinc-binding dehydrogenase Amir_4479 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4482 PF01047 MarR family Amir_4482 PF00480 ROK family Amir_4485 PF04055 Radical SAM superfamily Amir_4485 PF12544 Lysine-2,3-aminomutase Amir_4486 PF13193 AMP-binding enzyme C-terminal domain Amir_4486 PF00668 Condensation domain Amir_4486 PF07993 Male sterility protein Amir_4486 PF00550 Phosphopantetheine attachment site Amir_4486 PF00501 AMP-binding enzyme Amir_4487 PF01494 FAD binding domain Amir_4488 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Amir_4489 PF04299 Putative FMN-binding domain Amir_4490 PF00668 Condensation domain Amir_4490 PF13193 AMP-binding enzyme C-terminal domain Amir_4490 PF00501 AMP-binding enzyme Amir_4490 PF00550 Phosphopantetheine attachment site Amir_4492 PF02543 Carbamoyltransferase N-terminus Amir_4492 PF16861 Carbamoyltransferase C-terminus Amir_4493 PF00975 Thioesterase domain Amir_4494 PF00067 Cytochrome P450 Amir_4495 PF13193 AMP-binding enzyme C-terminal domain Amir_4495 PF00501 AMP-binding enzyme Amir_4495 PF00668 Condensation domain Amir_4495 PF00550 Phosphopantetheine attachment site Amir_4497 PF00288 GHMP kinases N terminal domain Amir_4498 PF00975 Thioesterase domain Amir_4498 PF00501 AMP-binding enzyme Amir_4498 PF00668 Condensation domain Amir_4498 PF00550 Phosphopantetheine attachment site Amir_4498 PF13193 AMP-binding enzyme C-terminal domain Amir_4499 PF01212 Beta-eliminating lyase Amir_4500 PF00291 Pyridoxal-phosphate dependent enzyme Amir_4501 PF14698 Argininosuccinate lyase C-terminal Amir_4501 PF00206 Lyase Amir_4502 PF03621 MbtH-like protein Amir_4503 PF00550 Phosphopantetheine attachment site Amir_4503 PF13193 AMP-binding enzyme C-terminal domain Amir_4503 PF00501 AMP-binding enzyme Amir_4503 PF00668 Condensation domain Amir_4505 PF00975 Thioesterase domain Amir_4505 PF00550 Phosphopantetheine attachment site Amir_4505 PF00668 Condensation domain Amir_4505 PF08241 Methyltransferase domain Amir_4505 PF00391 PEP-utilising enzyme, mobile domain Amir_4505 PF00501 AMP-binding enzyme Amir_4505 PF13193 AMP-binding enzyme C-terminal domain Amir_4506 PF00975 Thioesterase domain Amir_4506 PF00550 Phosphopantetheine attachment site Amir_4506 PF13193 AMP-binding enzyme C-terminal domain Amir_4506 PF00668 Condensation domain Amir_4506 PF00501 AMP-binding enzyme Amir_4508 PF13538 UvrD-like helicase C-terminal domain Amir_4509 PF03176 MMPL family Amir_4510 PF05384 Sensor protein DegS Amir_4510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4510 PF07730 Histidine kinase Amir_4511 PF00196 Bacterial regulatory proteins, luxR family Amir_4511 PF00072 Response regulator receiver domain Amir_4513 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4513 PF00512 His Kinase A (phospho-acceptor) domain Amir_4513 PF00672 HAMP domain Amir_4514 PF00486 Transcriptional regulatory protein, C terminal Amir_4514 PF00072 Response regulator receiver domain Amir_4515 PF02983 Alpha-lytic protease prodomain Amir_4516 PF00404 Dockerin type I domain Amir_4516 PF00657 GDSL-like Lipase/Acylhydrolase Amir_4536 PF00550 Phosphopantetheine attachment site Amir_4538 PF00501 AMP-binding enzyme Amir_4538 PF13193 AMP-binding enzyme C-terminal domain Amir_4538 PF00668 Condensation domain Amir_4538 PF00550 Phosphopantetheine attachment site Amir_4573 PF13419 Haloacid dehalogenase-like hydrolase Amir_4575 PF13419 Haloacid dehalogenase-like hydrolase Amir_4578 PF13613 Helix-turn-helix of DDE superfamily endonuclease Amir_4578 PF01609 Transposase DDE domain Amir_4586 PF13302 Acetyltransferase (GNAT) domain Amir_4588 PF00501 AMP-binding enzyme Amir_4588 PF00975 Thioesterase domain Amir_4588 PF13193 AMP-binding enzyme C-terminal domain Amir_4588 PF00668 Condensation domain Amir_4588 PF00550 Phosphopantetheine attachment site Amir_4589 PF00668 Condensation domain Amir_4589 PF13193 AMP-binding enzyme C-terminal domain Amir_4589 PF00501 AMP-binding enzyme Amir_4589 PF00550 Phosphopantetheine attachment site Amir_4590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Amir_4591 PF00155 Aminotransferase class I and II Amir_4593 PF03621 MbtH-like protein Amir_4596 PF00067 Cytochrome P450 Amir_4597 PF03704 Bacterial transcriptional activator domain Amir_4597 PF00931 NB-ARC domain Amir_4597 PF00486 Transcriptional regulatory protein, C terminal Amir_4598 PF01070 FMN-dependent dehydrogenase Amir_4599 PF00067 Cytochrome P450 Amir_4600 PF03621 MbtH-like protein Amir_4602 PF01494 FAD binding domain Amir_4603 PF00106 short chain dehydrogenase Amir_4604 PF00550 Phosphopantetheine attachment site Amir_4604 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4604 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4604 PF08659 KR domain Amir_4604 PF00698 Acyl transferase domain Amir_4604 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4604 PF08990 Erythronolide synthase docking Amir_4604 PF14765 Polyketide synthase dehydratase Amir_4604 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4605 PF00067 Cytochrome P450 Amir_4606 PF00135 Carboxylesterase family Amir_4608 PF00356 Bacterial regulatory proteins, lacI family Amir_4610 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4611 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4612 PF00933 Glycosyl hydrolase family 3 N terminal domain Amir_4612 PF14310 Fibronectin type III-like domain Amir_4612 PF07691 PA14 domain Amir_4612 PF01915 Glycosyl hydrolase family 3 C-terminal domain Amir_4615 PF01494 FAD binding domain Amir_4620 PF00440 Bacterial regulatory proteins, tetR family Amir_4624 PF09278 MerR, DNA binding Amir_4624 PF00376 MerR family regulatory protein Amir_4626 PF13193 AMP-binding enzyme C-terminal domain Amir_4626 PF00501 AMP-binding enzyme Amir_4627 PF16715 Cyclodipeptide synthase Amir_4628 PF08241 Methyltransferase domain Amir_4632 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4632 PF03466 LysR substrate binding domain Amir_4633 PF13291 ACT domain Amir_4633 PF00291 Pyridoxal-phosphate dependent enzyme Amir_4634 PF02837 Glycosyl hydrolases family 2, sugar binding domain Amir_4634 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Amir_4634 PF00703 Glycosyl hydrolases family 2 Amir_4634 PF16353 Domain of unknown function(DUF4981) Amir_4634 PF02929 Beta galactosidase small chain Amir_4636 PF00196 Bacterial regulatory proteins, luxR family Amir_4636 PF17874 MalT-like TPR region Amir_4637 PF08659 KR domain Amir_4637 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4637 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4637 PF00698 Acyl transferase domain Amir_4637 PF14765 Polyketide synthase dehydratase Amir_4637 PF00550 Phosphopantetheine attachment site Amir_4637 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4637 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4639 PF13520 Amino acid permease Amir_4642 PF13439 Glycosyltransferase Family 4 Amir_4646 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4646 PF00107 Zinc-binding dehydrogenase Amir_4648 PF02655 ATP-grasp domain Amir_4648 PF00206 Lyase Amir_4650 PF00501 AMP-binding enzyme Amir_4652 PF07859 alpha/beta hydrolase fold Amir_4653 PF02780 Transketolase, C-terminal domain Amir_4653 PF02779 Transketolase, pyrimidine binding domain Amir_4653 PF00364 Biotin-requiring enzyme Amir_4654 PF00206 Lyase Amir_4654 PF10397 Adenylosuccinate lyase C-terminus Amir_4660 PF00795 Carbon-nitrogen hydrolase Amir_4661 PF07859 alpha/beta hydrolase fold Amir_4663 PF01095 Pectinesterase Amir_4664 PF13472 GDSL-like Lipase/Acylhydrolase family Amir_4666 PF00072 Response regulator receiver domain Amir_4666 PF00196 Bacterial regulatory proteins, luxR family Amir_4669 PF00005 ABC transporter Amir_4671 PF00296 Luciferase-like monooxygenase Amir_4679 PF00400 WD domain, G-beta repeat Amir_4679 PF00069 Protein kinase domain Amir_4682 PF01341 Glycosyl hydrolases family 6 Amir_4682 PF00553 Cellulose binding domain Amir_4683 PF00440 Bacterial regulatory proteins, tetR family Amir_4684 PF13193 AMP-binding enzyme C-terminal domain Amir_4684 PF00501 AMP-binding enzyme Amir_4685 PF00171 Aldehyde dehydrogenase family Amir_4686 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) Amir_4687 PF00144 Beta-lactamase Amir_4689 PF00072 Response regulator receiver domain Amir_4689 PF00196 Bacterial regulatory proteins, luxR family Amir_4691 PF00144 Beta-lactamase Amir_4694 PF00931 NB-ARC domain Amir_4694 PF03704 Bacterial transcriptional activator domain Amir_4694 PF00486 Transcriptional regulatory protein, C terminal Amir_4695 PF00202 Aminotransferase class-III Amir_4698 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4698 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4698 PF08659 KR domain Amir_4698 PF08240 Alcohol dehydrogenase GroES-like domain Amir_4698 PF00698 Acyl transferase domain Amir_4698 PF14765 Polyketide synthase dehydratase Amir_4698 PF00550 Phosphopantetheine attachment site Amir_4698 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4699 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4699 PF14765 Polyketide synthase dehydratase Amir_4699 PF00698 Acyl transferase domain Amir_4699 PF08659 KR domain Amir_4699 PF00550 Phosphopantetheine attachment site Amir_4699 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4699 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4699 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4699 PF00698 Acyl transferase domain Amir_4699 PF08659 KR domain Amir_4699 PF14765 Polyketide synthase dehydratase Amir_4699 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4699 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4699 PF00550 Phosphopantetheine attachment site Amir_4700 PF01613 Flavin reductase like domain Amir_4702 PF01370 NAD dependent epimerase/dehydratase family Amir_4704 PF07690 Major Facilitator Superfamily Amir_4705 PF01638 HxlR-like helix-turn-helix Amir_4710 PF00561 alpha/beta hydrolase fold Amir_4711 PF00005 ABC transporter Amir_4713 PF05195 Aminopeptidase P, N-terminal domain Amir_4713 PF00557 Metallopeptidase family M24 Amir_4714 PF00561 alpha/beta hydrolase fold Amir_4715 PF00005 ABC transporter Amir_4715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_4716 PF00005 ABC transporter Amir_4716 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_4717 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4718 PF12911 N-terminal TM domain of oligopeptide transport permease C Amir_4718 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4719 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_4720 PF07729 FCD domain Amir_4720 PF00392 Bacterial regulatory proteins, gntR family Amir_4721 PF00171 Aldehyde dehydrogenase family Amir_4722 PF05544 Proline racemase Amir_4723 PF00701 Dihydrodipicolinate synthetase family Amir_4724 PF04324 BFD-like [2Fe-2S] binding domain Amir_4724 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_4726 PF04324 BFD-like [2Fe-2S] binding domain Amir_4726 PF01266 FAD dependent oxidoreductase Amir_4728 PF01791 DeoC/LacD family aldolase Amir_4729 PF00356 Bacterial regulatory proteins, lacI family Amir_4730 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Amir_4730 PF00591 Glycosyl transferase family, a/b domain Amir_4730 PF02885 Glycosyl transferase family, helical bundle domain Amir_4731 PF01979 Amidohydrolase family Amir_4732 PF00652 Ricin-type beta-trefoil lectin domain Amir_4732 PF00331 Glycosyl hydrolase family 10 Amir_4743 PF00005 ABC transporter Amir_4745 PF08281 Sigma-70, region 4 Amir_4745 PF04542 Sigma-70 region 2 Amir_4747 PF02233 NAD(P) transhydrogenase beta subunit Amir_4748 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Amir_4748 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Amir_4748 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Amir_4749 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Amir_4749 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Amir_4751 PF14256 YwiC-like protein Amir_4752 PF07732 Multicopper oxidase Amir_4761 PF04072 Leucine carboxyl methyltransferase Amir_4768 PF01297 Zinc-uptake complex component A periplasmic Amir_4770 PF00005 ABC transporter Amir_4771 PF00950 ABC 3 transport family Amir_4773 PF07683 Cobalamin synthesis protein cobW C-terminal domain Amir_4773 PF02492 CobW/HypB/UreG, nucleotide-binding domain Amir_4781 PF00291 Pyridoxal-phosphate dependent enzyme Amir_4783 PF00005 ABC transporter Amir_4784 PF01032 FecCD transport family Amir_4787 PF01425 Amidase Amir_4788 PF00753 Metallo-beta-lactamase superfamily Amir_4789 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Amir_4789 PF00672 HAMP domain Amir_4789 PF12729 Four helix bundle sensory module for signal transduction Amir_4791 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4791 PF03466 LysR substrate binding domain Amir_4794 PF00440 Bacterial regulatory proteins, tetR family Amir_4794 PF17754 MftR C-terminal domain Amir_4795 PF16363 GDP-mannose 4,6 dehydratase Amir_4796 PF04143 Sulphur transport Amir_4799 PF01494 FAD binding domain Amir_4800 PF00196 Bacterial regulatory proteins, luxR family Amir_4802 PF07690 Major Facilitator Superfamily Amir_4803 PF08362 YcdC-like protein, C-terminal region Amir_4803 PF00440 Bacterial regulatory proteins, tetR family Amir_4804 PF00440 Bacterial regulatory proteins, tetR family Amir_4804 PF08361 MAATS-type transcriptional repressor, C-terminal region Amir_4812 PF00067 Cytochrome P450 Amir_4815 PF03259 Roadblock/LC7 domain Amir_4818 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_4818 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_4821 PF02595 Glycerate kinase family Amir_4824 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4824 PF03466 LysR substrate binding domain Amir_4825 PF00202 Aminotransferase class-III Amir_4828 PF13229 Right handed beta helix region Amir_4830 PF00211 Adenylate and Guanylate cyclase catalytic domain Amir_4830 PF00069 Protein kinase domain Amir_4834 PF00067 Cytochrome P450 Amir_4836 PF00535 Glycosyl transferase family 2 Amir_4838 PF01370 NAD dependent epimerase/dehydratase family Amir_4841 PF03033 Glycosyltransferase family 28 N-terminal domain Amir_4841 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Amir_4843 PF01370 NAD dependent epimerase/dehydratase family Amir_4844 PF03033 Glycosyltransferase family 28 N-terminal domain Amir_4844 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Amir_4845 PF00067 Cytochrome P450 Amir_4848 PF00069 Protein kinase domain Amir_4849 PF02441 Flavoprotein Amir_4853 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4853 PF00698 Acyl transferase domain Amir_4853 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4853 PF00550 Phosphopantetheine attachment site Amir_4853 PF08659 KR domain Amir_4853 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4856 PF00550 Phosphopantetheine attachment site Amir_4856 PF00501 AMP-binding enzyme Amir_4856 PF13193 AMP-binding enzyme C-terminal domain Amir_4857 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4857 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4858 PF00171 Aldehyde dehydrogenase family Amir_4859 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amir_4859 PF00205 Thiamine pyrophosphate enzyme, central domain Amir_4859 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Amir_4860 PF00501 AMP-binding enzyme Amir_4861 PF00550 Phosphopantetheine attachment site Amir_4862 PF00005 ABC transporter Amir_4862 PF00664 ABC transporter transmembrane region Amir_4863 PF00440 Bacterial regulatory proteins, tetR family Amir_4864 PF07690 Major Facilitator Superfamily Amir_4865 PF07690 Major Facilitator Superfamily Amir_4866 PF08450 SMP-30/Gluconolactonase/LRE-like region Amir_4867 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_4879 PF04055 Radical SAM superfamily Amir_4879 PF06969 HemN C-terminal domain Amir_4880 PF00293 NUDIX domain Amir_4882 PF01546 Peptidase family M20/M25/M40 Amir_4882 PF07687 Peptidase dimerisation domain Amir_4884 PF01614 Bacterial transcriptional regulator Amir_4884 PF09339 IclR helix-turn-helix domain Amir_4885 PF01048 Phosphorylase superfamily Amir_4886 PF00005 ABC transporter Amir_4887 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4889 PF00528 Binding-protein-dependent transport system inner membrane component Amir_4891 PF01979 Amidohydrolase family Amir_4893 PF03466 LysR substrate binding domain Amir_4893 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4894 PF00069 Protein kinase domain Amir_4894 PF00400 WD domain, G-beta repeat Amir_4896 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Amir_4903 PF07729 FCD domain Amir_4903 PF00392 Bacterial regulatory proteins, gntR family Amir_4904 PF00005 ABC transporter Amir_4905 PF01032 FecCD transport family Amir_4906 PF01032 FecCD transport family Amir_4908 PF13575 Domain of unknown function (DUF4135) Amir_4908 PF05147 Lanthionine synthetase C-like protein Amir_4909 PF01063 Amino-transferase class IV Amir_4910 PF00296 Luciferase-like monooxygenase Amir_4911 PF00668 Condensation domain Amir_4911 PF16197 Ketoacyl-synthetase C-terminal extension Amir_4911 PF00109 Beta-ketoacyl synthase, N-terminal domain Amir_4911 PF02801 Beta-ketoacyl synthase, C-terminal domain Amir_4911 PF00550 Phosphopantetheine attachment site Amir_4911 PF00698 Acyl transferase domain Amir_4912 PF00501 AMP-binding enzyme Amir_4914 PF00975 Thioesterase domain Amir_4914 PF00550 Phosphopantetheine attachment site Amir_4914 PF00668 Condensation domain Amir_4914 PF00501 AMP-binding enzyme Amir_4914 PF13193 AMP-binding enzyme C-terminal domain Amir_4915 PF00248 Aldo/keto reductase family Amir_4918 PF05690 Thiazole biosynthesis protein ThiG Amir_4921 PF07228 Stage II sporulation protein E (SpoIIE) Amir_4921 PF00672 HAMP domain Amir_4923 PF13350 Tyrosine phosphatase family Amir_4925 PF13472 GDSL-like Lipase/Acylhydrolase family Amir_4926 PF05651 Putative sugar diacid recognition Amir_4926 PF17853 GGDEF-like domain Amir_4926 PF13556 PucR C-terminal helix-turn-helix domain Amir_4929 PF07690 Major Facilitator Superfamily Amir_4932 PF02595 Glycerate kinase family Amir_4934 PF00512 His Kinase A (phospho-acceptor) domain Amir_4934 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_4934 PF00672 HAMP domain Amir_4935 PF00072 Response regulator receiver domain Amir_4935 PF00486 Transcriptional regulatory protein, C terminal Amir_4937 PF00999 Sodium/hydrogen exchanger family Amir_4938 PF07690 Major Facilitator Superfamily Amir_4940 PF03466 LysR substrate binding domain Amir_4940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_4942 PF00106 short chain dehydrogenase Amir_4943 PF01975 Survival protein SurE Amir_4947 PF01593 Flavin containing amine oxidoreductase Amir_4949 PF00535 Glycosyl transferase family 2 Amir_4953 PF04389 Peptidase family M28 Amir_4953 PF01483 Proprotein convertase P-domain Amir_4956 PF00535 Glycosyl transferase family 2 Amir_4957 PF00534 Glycosyl transferases group 1 Amir_4957 PF13579 Glycosyl transferase 4-like domain Amir_4958 PF13439 Glycosyltransferase Family 4 Amir_4958 PF00534 Glycosyl transferases group 1 Amir_4963 PF01915 Glycosyl hydrolase family 3 C-terminal domain Amir_4963 PF00933 Glycosyl hydrolase family 3 N terminal domain Amir_4963 PF14310 Fibronectin type III-like domain Amir_4964 PF01095 Pectinesterase Amir_4965 PF00561 alpha/beta hydrolase fold Amir_4966 PF03664 Glycosyl hydrolase family 62 Amir_4966 PF00652 Ricin-type beta-trefoil lectin domain Amir_4970 PF03848 Tellurite resistance protein TehB Amir_4971 PF01494 FAD binding domain Amir_4975 PF03176 MMPL family Amir_4978 PF06722 Protein of unknown function (DUF1205) Amir_4979 PF00571 CBS domain Amir_4979 PF03471 Transporter associated domain Amir_4979 PF01595 Cyclin M transmembrane N-terminal domain Amir_4989 PF04075 F420H(2)-dependent quinone reductase Amir_4990 PF01300 Telomere recombination Amir_4995 PF00072 Response regulator receiver domain Amir_4995 PF00196 Bacterial regulatory proteins, luxR family Amir_5000 PF13302 Acetyltransferase (GNAT) domain Amir_5001 PF02817 e3 binding domain Amir_5001 PF00364 Biotin-requiring enzyme Amir_5001 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Amir_5002 PF02780 Transketolase, C-terminal domain Amir_5002 PF02779 Transketolase, pyrimidine binding domain Amir_5003 PF00676 Dehydrogenase E1 component Amir_5004 PF01037 Lrp/AsnC ligand binding domain Amir_5004 PF13404 AsnC-type helix-turn-helix domain Amir_5005 PF00188 Cysteine-rich secretory protein family Amir_5006 PF00672 HAMP domain Amir_5006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5006 PF00512 His Kinase A (phospho-acceptor) domain Amir_5007 PF00072 Response regulator receiver domain Amir_5007 PF00486 Transcriptional regulatory protein, C terminal Amir_5012 PF00563 EAL domain Amir_5012 PF03707 Bacterial signalling protein N terminal repeat Amir_5012 PF00990 Diguanylate cyclase, GGDEF domain Amir_5014 PF00107 Zinc-binding dehydrogenase Amir_5014 PF08240 Alcohol dehydrogenase GroES-like domain Amir_5019 PF02401 LytB protein Amir_5020 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Amir_5020 PF02779 Transketolase, pyrimidine binding domain Amir_5020 PF02780 Transketolase, C-terminal domain Amir_5024 PF04542 Sigma-70 region 2 Amir_5024 PF04545 Sigma-70, region 4 Amir_5025 PF00535 Glycosyl transferase family 2 Amir_5027 PF00107 Zinc-binding dehydrogenase Amir_5027 PF08240 Alcohol dehydrogenase GroES-like domain Amir_5028 PF17926 Tetracyclin repressor-like, C-terminal domain Amir_5028 PF00440 Bacterial regulatory proteins, tetR family Amir_5030 PF03601 Conserved hypothetical protein 698 Amir_5033 PF00486 Transcriptional regulatory protein, C terminal Amir_5033 PF00072 Response regulator receiver domain Amir_5034 PF01590 GAF domain Amir_5034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5034 PF00360 Phytochrome region Amir_5034 PF00512 His Kinase A (phospho-acceptor) domain Amir_5034 PF08446 PAS fold Amir_5035 PF00072 Response regulator receiver domain Amir_5043 PF13538 UvrD-like helicase C-terminal domain Amir_5046 PF00440 Bacterial regulatory proteins, tetR family Amir_5046 PF17926 Tetracyclin repressor-like, C-terminal domain Amir_5047 PF00106 short chain dehydrogenase Amir_5049 PF07676 WD40-like Beta Propeller Repeat Amir_5052 PF13538 UvrD-like helicase C-terminal domain Amir_5053 PF00005 ABC transporter Amir_5054 PF01032 FecCD transport family Amir_5055 PF01032 FecCD transport family Amir_5056 PF00294 pfkB family carbohydrate kinase Amir_5057 PF08240 Alcohol dehydrogenase GroES-like domain Amir_5057 PF00107 Zinc-binding dehydrogenase Amir_5058 PF00083 Sugar (and other) transporter Amir_5058 PF07690 Major Facilitator Superfamily Amir_5059 PF08125 Mannitol dehydrogenase C-terminal domain Amir_5059 PF01232 Mannitol dehydrogenase Rossmann domain Amir_5060 PF13378 Enolase C-terminal domain-like Amir_5060 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amir_5061 PF00392 Bacterial regulatory proteins, gntR family Amir_5061 PF07729 FCD domain Amir_5063 PF03621 MbtH-like protein Amir_5064 PF00501 AMP-binding enzyme Amir_5064 PF00668 Condensation domain Amir_5064 PF13193 AMP-binding enzyme C-terminal domain Amir_5064 PF00550 Phosphopantetheine attachment site Amir_5065 PF01497 Periplasmic binding protein Amir_5066 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) Amir_5067 PF00005 ABC transporter Amir_5067 PF00664 ABC transporter transmembrane region Amir_5068 PF00005 ABC transporter Amir_5068 PF00664 ABC transporter transmembrane region Amir_5069 PF16123 Hydroxyacylglutathione hydrolase C-terminus Amir_5069 PF00753 Metallo-beta-lactamase superfamily Amir_5071 PF01593 Flavin containing amine oxidoreductase Amir_5072 PF00553 Cellulose binding domain Amir_5072 PF00331 Glycosyl hydrolase family 10 Amir_5075 PF03466 LysR substrate binding domain Amir_5075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_5080 PF01614 Bacterial transcriptional regulator Amir_5080 PF09339 IclR helix-turn-helix domain Amir_5081 PF02627 Carboxymuconolactone decarboxylase family Amir_5083 PF12697 Alpha/beta hydrolase family Amir_5084 PF00775 Dioxygenase Amir_5085 PF00775 Dioxygenase Amir_5085 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Amir_5086 PF01144 Coenzyme A transferase Amir_5087 PF01144 Coenzyme A transferase Amir_5090 PF07228 Stage II sporulation protein E (SpoIIE) Amir_5090 PF00672 HAMP domain Amir_5091 PF09308 LuxQ, periplasmic Amir_5091 PF00072 Response regulator receiver domain Amir_5091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5091 PF00512 His Kinase A (phospho-acceptor) domain Amir_5092 PF01740 STAS domain Amir_5094 PF02541 Ppx/GppA phosphatase family Amir_5097 PF00583 Acetyltransferase (GNAT) family Amir_5098 PF00296 Luciferase-like monooxygenase Amir_5102 PF00356 Bacterial regulatory proteins, lacI family Amir_5103 PF17676 LD-carboxypeptidase C-terminal domain Amir_5103 PF02016 LD-carboxypeptidase N-terminal domain Amir_5104 PF00106 short chain dehydrogenase Amir_5105 PF00440 Bacterial regulatory proteins, tetR family Amir_5107 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading Amir_5112 PF00128 Alpha amylase, catalytic domain Amir_5112 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Amir_5113 PF00128 Alpha amylase, catalytic domain Amir_5114 PF00128 Alpha amylase, catalytic domain Amir_5114 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Amir_5116 PF02446 4-alpha-glucanotransferase Amir_5117 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Amir_5117 PF00356 Bacterial regulatory proteins, lacI family Amir_5118 PF00578 AhpC/TSA family Amir_5120 PF01476 LysM domain Amir_5120 PF08525 Opacity-associated protein A N-terminal motif Amir_5120 PF01551 Peptidase family M23 Amir_5121 PF00912 Transglycosylase Amir_5121 PF00905 Penicillin binding protein transpeptidase domain Amir_5122 PF00294 pfkB family carbohydrate kinase Amir_5123 PF08281 Sigma-70, region 4 Amir_5123 PF04542 Sigma-70 region 2 Amir_5124 PF00561 alpha/beta hydrolase fold Amir_5126 PF12804 MobA-like NTP transferase domain Amir_5127 PF03466 LysR substrate binding domain Amir_5127 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_5129 PF00455 DeoR C terminal sensor domain Amir_5129 PF08220 DeoR-like helix-turn-helix domain Amir_5130 PF13580 SIS domain Amir_5131 PF00005 ABC transporter Amir_5131 PF00664 ABC transporter transmembrane region Amir_5132 PF00378 Enoyl-CoA hydratase/isomerase Amir_5134 PF00005 ABC transporter Amir_5134 PF12848 ABC transporter Amir_5137 PF08281 Sigma-70, region 4 Amir_5137 PF04542 Sigma-70 region 2 Amir_5142 PF13286 Phosphohydrolase-associated domain Amir_5142 PF01966 HD domain Amir_5145 PF00990 Diguanylate cyclase, GGDEF domain Amir_5146 PF04107 Glutamate-cysteine ligase family 2(GCS2) Amir_5147 PF00571 CBS domain Amir_5148 PF01883 Iron-sulfur cluster assembly protein Amir_5149 PF01592 NifU-like N terminal domain Amir_5150 PF00266 Aminotransferase class-V Amir_5151 PF00005 ABC transporter Amir_5153 PF01458 Uncharacterized protein family (UPF0051) Amir_5154 PF01458 Uncharacterized protein family (UPF0051) Amir_5159 PF11856 Protein of unknown function (DUF3376) Amir_5159 PF01734 Patatin-like phospholipase Amir_5160 PF00534 Glycosyl transferases group 1 Amir_5160 PF13439 Glycosyltransferase Family 4 Amir_5162 PF00005 ABC transporter Amir_5171 PF03259 Roadblock/LC7 domain Amir_5172 PF00512 His Kinase A (phospho-acceptor) domain Amir_5172 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5174 PF00474 Sodium:solute symporter family Amir_5178 PF00107 Zinc-binding dehydrogenase Amir_5178 PF08240 Alcohol dehydrogenase GroES-like domain Amir_5179 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Amir_5183 PF08281 Sigma-70, region 4 Amir_5183 PF04542 Sigma-70 region 2 Amir_5185 PF01040 UbiA prenyltransferase family Amir_5186 PF00456 Transketolase, thiamine diphosphate binding domain Amir_5186 PF02779 Transketolase, pyrimidine binding domain Amir_5186 PF02780 Transketolase, C-terminal domain Amir_5187 PF00923 Transaldolase/Fructose-6-phosphate aldolase Amir_5188 PF00342 Phosphoglucose isomerase Amir_5189 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Amir_5189 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Amir_5191 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Amir_5192 PF07730 Histidine kinase Amir_5196 PF03840 Preprotein translocase SecG subunit Amir_5197 PF00121 Triosephosphate isomerase Amir_5198 PF00162 Phosphoglycerate kinase Amir_5199 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Amir_5199 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Amir_5203 PF10298 WhiA N-terminal LAGLIDADG-like domain Amir_5203 PF02650 WhiA C-terminal HTH domain Amir_5203 PF14527 WhiA LAGLIDADG-like domain Amir_5204 PF01933 Uncharacterised protein family UPF0052 Amir_5205 PF03668 P-loop ATPase protein family Amir_5206 PF08459 UvrC Helix-hairpin-helix N-terminal Amir_5206 PF01541 GIY-YIG catalytic domain Amir_5206 PF02151 UvrB/uvrC motif Amir_5214 PF08281 Sigma-70, region 4 Amir_5214 PF04542 Sigma-70 region 2 Amir_5215 PF04389 Peptidase family M28 Amir_5215 PF02225 PA domain Amir_5216 PF10756 Bacterial PH domain Amir_5217 PF00885 6,7-dimethyl-8-ribityllumazine synthase Amir_5218 PF00925 GTP cyclohydrolase II Amir_5218 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Amir_5219 PF00677 Lumazine binding domain Amir_5220 PF00834 Ribulose-phosphate 3 epimerase family Amir_5222 PF04127 DNA / pantothenate metabolism flavoprotein Amir_5222 PF02441 Flavoprotein Amir_5223 PF01189 16S rRNA methyltransferase RsmB/F Amir_5223 PF01029 NusB family Amir_5224 PF00551 Formyl transferase Amir_5224 PF02911 Formyl transferase, C-terminal domain Amir_5225 PF01327 Polypeptide deformylase Amir_5234 PF17764 3′ DNA-binding domain (3′BD) Amir_5235 PF02773 S-adenosylmethionine synthetase, C-terminal domain Amir_5235 PF00438 S-adenosylmethionine synthetase, N-terminal domain Amir_5235 PF02772 S-adenosylmethionine synthetase, central domain Amir_5236 PF02441 Flavoprotein Amir_5236 PF04127 DNA / pantothenate metabolism flavoprotein Amir_5237 PF01192 RNA polymerase Rpb6 Amir_5238 PF00625 Guanylate kinase Amir_5240 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Amir_5241 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amir_5241 PF02142 MGS-like domain Amir_5241 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Amir_5242 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Amir_5242 PF00117 Glutamine amidotransferase class-I Amir_5244 PF01979 Amidohydrolase family Amir_5245 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Amir_5245 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Amir_5246 PF00156 Phosphoribosyl transferase domain Amir_5248 PF01029 NusB family Amir_5249 PF08207 Elongation factor P (EF-P) KOW-like domain Amir_5249 PF09285 Elongation factor P, C-terminal Amir_5249 PF01132 Elongation factor P (EF-P) OB domain Amir_5250 PF01321 Creatinase/Prolidase N-terminal domain Amir_5250 PF00557 Metallopeptidase family M24 Amir_5252 PF01220 Dehydroquinase class II Amir_5253 PF01761 3-dehydroquinate synthase Amir_5254 PF01202 Shikimate kinase Amir_5255 PF01264 Chorismate synthase Amir_5256 PF01478 Type IV leader peptidase family Amir_5256 PF06750 Bacterial Peptidase A24 N-terminal domain Amir_5257 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Amir_5258 PF00367 phosphotransferase system, EIIB Amir_5258 PF02378 Phosphotransferase system, EIIC Amir_5260 PF00367 phosphotransferase system, EIIB Amir_5260 PF02378 Phosphotransferase system, EIIC Amir_5261 PF00381 PTS HPr component phosphorylation site Amir_5262 PF08501 Shikimate dehydrogenase substrate binding domain Amir_5262 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Amir_5264 PF03652 Holliday junction resolvase Amir_5265 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Amir_5265 PF01411 tRNA synthetases class II (A) Amir_5265 PF02272 DHHA1 domain Amir_5272 PF00004 ATPase family associated with various cellular activities (AAA) Amir_5272 PF16193 AAA C-terminal domain Amir_5272 PF12002 MgsA AAA+ ATPase C terminal Amir_5274 PF00270 DEAD/DEAH box helicase Amir_5274 PF00271 Helicase conserved C-terminal domain Amir_5274 PF08148 DSHCT (NUC185) domain Amir_5275 PF00486 Transcriptional regulatory protein, C terminal Amir_5275 PF00498 FHA domain Amir_5275 PF03704 Bacterial transcriptional activator domain Amir_5276 PF06737 Transglycosylase-like domain Amir_5278 PF04397 LytTr DNA-binding domain Amir_5278 PF00072 Response regulator receiver domain Amir_5280 PF00474 Sodium:solute symporter family Amir_5281 PF07694 5TMR of 5TMR-LYT Amir_5281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5281 PF06580 Histidine kinase Amir_5286 PF01648 4'-phosphopantetheinyl transferase superfamily Amir_5286 PF17837 4'-phosphopantetheinyl transferase N-terminal domain Amir_5290 PF01638 HxlR-like helix-turn-helix Amir_5294 PF00293 NUDIX domain Amir_5297 PF08240 Alcohol dehydrogenase GroES-like domain Amir_5297 PF00107 Zinc-binding dehydrogenase Amir_5298 PF12852 Cupin Amir_5298 PF12833 Helix-turn-helix domain Amir_5303 PF00106 short chain dehydrogenase Amir_5306 PF00107 Zinc-binding dehydrogenase Amir_5306 PF08240 Alcohol dehydrogenase GroES-like domain Amir_5307 PF00528 Binding-protein-dependent transport system inner membrane component Amir_5308 PF00528 Binding-protein-dependent transport system inner membrane component Amir_5311 PF00378 Enoyl-CoA hydratase/isomerase Amir_5313 PF05147 Lanthionine synthetase C-like protein Amir_5313 PF13575 Domain of unknown function (DUF4135) Amir_5316 PF03473 MOSC domain Amir_5316 PF03475 3-alpha domain Amir_5317 PF00248 Aldo/keto reductase family Amir_5320 PF00171 Aldehyde dehydrogenase family Amir_5320 PF01575 MaoC like domain Amir_5321 PF00652 Ricin-type beta-trefoil lectin domain Amir_5321 PF16483 Beta-1,3-glucanase Amir_5323 PF03704 Bacterial transcriptional activator domain Amir_5323 PF00486 Transcriptional regulatory protein, C terminal Amir_5323 PF00931 NB-ARC domain Amir_5324 PF01757 Acyltransferase family Amir_5326 PF00664 ABC transporter transmembrane region Amir_5326 PF00005 ABC transporter Amir_5331 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family Amir_5332 PF00849 RNA pseudouridylate synthase Amir_5334 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading Amir_5339 PF02018 Carbohydrate binding domain Amir_5339 PF02927 Cellulase N-terminal ig-like domain Amir_5339 PF00759 Glycosyl hydrolase family 9 Amir_5340 PF00106 short chain dehydrogenase Amir_5343 PF00356 Bacterial regulatory proteins, lacI family Amir_5344 PF01595 Cyclin M transmembrane N-terminal domain Amir_5344 PF03471 Transporter associated domain Amir_5344 PF00571 CBS domain Amir_5345 PF01595 Cyclin M transmembrane N-terminal domain Amir_5345 PF00571 CBS domain Amir_5352 PF02347 Glycine cleavage system P-protein Amir_5353 PF13411 MerR HTH family regulatory protein Amir_5354 PF02577 Bifunctional nuclease Amir_5355 PF00376 MerR family regulatory protein Amir_5356 PF00498 FHA domain Amir_5357 PF01597 Glycine cleavage H-protein Amir_5360 PF01740 STAS domain Amir_5361 PF13581 Histidine kinase-like ATPase domain Amir_5362 PF13581 Histidine kinase-like ATPase domain Amir_5363 PF04545 Sigma-70, region 4 Amir_5363 PF04539 Sigma-70 region 3 Amir_5363 PF04542 Sigma-70 region 2 Amir_5364 PF02467 Transcription factor WhiB Amir_5366 PF00248 Aldo/keto reductase family Amir_5370 PF04545 Sigma-70, region 4 Amir_5370 PF04542 Sigma-70 region 2 Amir_5374 PF13492 GAF domain Amir_5374 PF13185 GAF domain Amir_5374 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5374 PF07730 Histidine kinase Amir_5375 PF00196 Bacterial regulatory proteins, luxR family Amir_5375 PF00072 Response regulator receiver domain Amir_5376 PF00196 Bacterial regulatory proteins, luxR family Amir_5376 PF00072 Response regulator receiver domain Amir_5393 PF16450 Proteasomal ATPase OB C-terminal domain Amir_5393 PF17758 Proteasomal ATPase OB N-terminal domain Amir_5393 PF00004 ATPase family associated with various cellular activities (AAA) Amir_5399 PF04545 Sigma-70, region 4 Amir_5399 PF04539 Sigma-70 region 3 Amir_5399 PF04542 Sigma-70 region 2 Amir_5402 PF04107 Glutamate-cysteine ligase family 2(GCS2) Amir_5403 PF01740 STAS domain Amir_5406 PF01965 DJ-1/PfpI family Amir_5407 PF12833 Helix-turn-helix domain Amir_5407 PF01965 DJ-1/PfpI family Amir_5408 PF00069 Protein kinase domain Amir_5408 PF13462 Thioredoxin Amir_5412 PF00082 Subtilase family Amir_5415 PF00563 EAL domain Amir_5415 PF03707 Bacterial signalling protein N terminal repeat Amir_5415 PF00990 Diguanylate cyclase, GGDEF domain Amir_5417 PF03259 Roadblock/LC7 domain Amir_5420 PF01494 FAD binding domain Amir_5421 PF00005 ABC transporter Amir_5422 PF00528 Binding-protein-dependent transport system inner membrane component Amir_5423 PF00528 Binding-protein-dependent transport system inner membrane component Amir_5425 PF00849 RNA pseudouridylate synthase Amir_5425 PF01479 S4 domain Amir_5426 PF04079 Segregation and condensation complex subunit ScpB Amir_5427 PF02616 Segregation and condensation protein ScpA Amir_5429 PF13614 AAA domain Amir_5430 PF01022 Bacterial regulatory protein, arsR family Amir_5431 PF02899 Phage integrase, N-terminal SAM-like domain Amir_5431 PF00589 Phage integrase family Amir_5434 PF00293 NUDIX domain Amir_5435 PF00117 Glutamine amidotransferase class-I Amir_5435 PF06418 CTP synthase N-terminus Amir_5436 PF11382 Copper transport outer membrane protein, MctB Amir_5439 PF02463 RecF/RecN/SMC N terminal domain Amir_5440 PF01513 ATP-NAD kinase Amir_5441 PF01479 S4 domain Amir_5441 PF01728 FtsJ-like methyltransferase Amir_5443 PF18407 GCN5-related N-acetyltransferase like domain Amir_5443 PF13344 Haloacid dehalogenase-like hydrolase Amir_5445 PF00579 tRNA synthetases class I (W and Y) Amir_5448 PF02245 Methylpurine-DNA glycosylase (MPG) Amir_5449 PF00206 Lyase Amir_5449 PF14698 Argininosuccinate lyase C-terminal Amir_5450 PF00764 Arginosuccinate synthase Amir_5451 PF01316 Arginine repressor, DNA binding domain Amir_5451 PF02863 Arginine repressor, C-terminal domain Amir_5452 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Amir_5452 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Amir_5453 PF00202 Aminotransferase class-III Amir_5454 PF00696 Amino acid kinase family Amir_5455 PF01960 ArgJ family Amir_5456 PF02774 Semialdehyde dehydrogenase, dimerisation domain Amir_5456 PF01118 Semialdehyde dehydrogenase, NAD binding domain Amir_5457 PF08240 Alcohol dehydrogenase GroES-like domain Amir_5457 PF00107 Zinc-binding dehydrogenase Amir_5460 PF01381 Helix-turn-helix Amir_5462 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Amir_5462 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_5464 PF01588 Putative tRNA binding domain Amir_5464 PF03147 Ferredoxin-fold anticodon binding domain Amir_5464 PF03483 B3/4 domain Amir_5464 PF03484 tRNA synthetase B5 domain Amir_5464 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Amir_5465 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Amir_5465 PF01409 tRNA synthetases class II core domain (F) Amir_5466 PF00183 Hsp90 protein Amir_5466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5468 PF00072 Response regulator receiver domain Amir_5468 PF00486 Transcriptional regulatory protein, C terminal Amir_5469 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5469 PF00672 HAMP domain Amir_5469 PF00512 His Kinase A (phospho-acceptor) domain Amir_5470 PF00588 SpoU rRNA Methylase family Amir_5470 PF08032 RNA 2'-O ribose methyltransferase substrate binding Amir_5471 PF00453 Ribosomal protein L20 Amir_5472 PF01632 Ribosomal protein L35 Amir_5473 PF00707 Translation initiation factor IF-3, C-terminal domain Amir_5473 PF05198 Translation initiation factor IF-3, N-terminal domain Amir_5476 PF00486 Transcriptional regulatory protein, C terminal Amir_5476 PF03704 Bacterial transcriptional activator domain Amir_5476 PF00931 NB-ARC domain Amir_5478 PF09339 IclR helix-turn-helix domain Amir_5478 PF01614 Bacterial transcriptional regulator Amir_5479 PF00294 pfkB family carbohydrate kinase Amir_5481 PF07969 Amidohydrolase family Amir_5482 PF02447 GntP family permease Amir_5483 PF00005 ABC transporter Amir_5483 PF17755 UvrA DNA-binding domain Amir_5483 PF17760 UvrA interaction domain Amir_5486 PF00753 Metallo-beta-lactamase superfamily Amir_5490 PF00155 Aminotransferase class I and II Amir_5491 PF01022 Bacterial regulatory protein, arsR family Amir_5502 PF00089 Trypsin Amir_5503 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Amir_5506 PF09594 Glycosyltransferase family 87 Amir_5512 PF07676 WD40-like Beta Propeller Repeat Amir_5512 PF00326 Prolyl oligopeptidase family Amir_5513 PF03741 Integral membrane protein TerC family Amir_5514 PF00005 ABC transporter Amir_5516 PF04851 Type III restriction enzyme, res subunit Amir_5516 PF00271 Helicase conserved C-terminal domain Amir_5516 PF17757 UvrB interaction domain Amir_5516 PF02151 UvrB/uvrC motif Amir_5516 PF12344 Ultra-violet resistance protein B Amir_5520 PF01121 Dephospho-CoA kinase Amir_5520 PF04229 GrpB protein Amir_5522 PF00575 S1 RNA binding domain Amir_5527 PF17934 Tetracyclin repressor-like, C-terminal domain Amir_5527 PF00440 Bacterial regulatory proteins, tetR family Amir_5530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_5530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_5532 PF01367 5'-3' exonuclease, C-terminal SAM fold Amir_5532 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Amir_5532 PF00476 DNA polymerase family A Amir_5533 PF03061 Thioesterase superfamily Amir_5535 PF00005 ABC transporter Amir_5536 PF12399 Branched-chain amino acid ATP-binding cassette transporter Amir_5536 PF00005 ABC transporter Amir_5537 PF11862 Domain of unknown function (DUF3382) Amir_5537 PF02653 Branched-chain amino acid transport system / permease component Amir_5538 PF02653 Branched-chain amino acid transport system / permease component Amir_5540 PF00072 Response regulator receiver domain Amir_5540 PF03861 ANTAR domain Amir_5544 PF13380 CoA binding domain Amir_5545 PF01042 Endoribonuclease L-PSP Amir_5546 PF12697 Alpha/beta hydrolase family Amir_5548 PF00805 Pentapeptide repeats (8 copies) Amir_5549 PF00271 Helicase conserved C-terminal domain Amir_5549 PF09382 RQC domain Amir_5549 PF00270 DEAD/DEAH box helicase Amir_5549 PF00570 HRDC domain Amir_5549 PF16124 RecQ zinc-binding Amir_5585 PF02481 DNA recombination-mediator protein A Amir_5585 PF17782 DprA winged helix domain Amir_5586 PF00156 Phosphoribosyl transferase domain Amir_5598 PF00293 NUDIX domain Amir_5598 PF13344 Haloacid dehalogenase-like hydrolase Amir_5643 PF01183 Glycosyl hydrolases family 25 Amir_5648 PF02583 Metal-sensitive transcriptional repressor Amir_5649 PF11774 Lsr2 Amir_5650 PF04715 Anthranilate synthase component I, N terminal region Amir_5650 PF00425 chorismate binding enzyme Amir_5650 PF00117 Glutamine amidotransferase class-I Amir_5652 PF08281 Sigma-70, region 4 Amir_5652 PF04542 Sigma-70 region 2 Amir_5653 PF00149 Calcineurin-like phosphoesterase Amir_5654 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Amir_5654 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Amir_5655 PF02675 S-adenosylmethionine decarboxylase Amir_5657 PF00326 Prolyl oligopeptidase family Amir_5657 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region Amir_5658 PF00881 Nitroreductase family Amir_5659 PF00464 Serine hydroxymethyltransferase Amir_5660 PF01571 Aminomethyltransferase folate-binding domain Amir_5660 PF08669 Glycine cleavage T-protein C-terminal barrel domain Amir_5665 PF02515 CoA-transferase family III Amir_5666 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_5666 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_5666 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_5668 PF02803 Thiolase, C-terminal domain Amir_5668 PF00108 Thiolase, N-terminal domain Amir_5669 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amir_5669 PF00378 Enoyl-CoA hydratase/isomerase Amir_5669 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Amir_5673 PF00356 Bacterial regulatory proteins, lacI family Amir_5674 PF02687 FtsX-like permease family Amir_5674 PF00005 ABC transporter Amir_5674 PF12704 MacB-like periplasmic core domain Amir_5675 PF00005 ABC transporter Amir_5675 PF02687 FtsX-like permease family Amir_5675 PF12704 MacB-like periplasmic core domain Amir_5676 PF13191 AAA ATPase domain Amir_5676 PF00211 Adenylate and Guanylate cyclase catalytic domain Amir_5677 PF00931 NB-ARC domain Amir_5677 PF00486 Transcriptional regulatory protein, C terminal Amir_5677 PF03704 Bacterial transcriptional activator domain Amir_5678 PF09335 SNARE associated Golgi protein Amir_5682 PF00484 Carbonic anhydrase Amir_5683 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Amir_5683 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Amir_5684 PF04542 Sigma-70 region 2 Amir_5684 PF08281 Sigma-70, region 4 Amir_5687 PF00224 Pyruvate kinase, barrel domain Amir_5687 PF02887 Pyruvate kinase, alpha/beta domain Amir_5692 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Amir_5692 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_5693 PF01493 GXGXG motif Amir_5693 PF01645 Conserved region in glutamate synthase Amir_5693 PF04898 Glutamate synthase central domain Amir_5693 PF00310 Glutamine amidotransferases class-II Amir_5694 PF00375 Sodium:dicarboxylate symporter family Amir_5696 PF00672 HAMP domain Amir_5696 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_5696 PF00512 His Kinase A (phospho-acceptor) domain Amir_5698 PF00486 Transcriptional regulatory protein, C terminal Amir_5698 PF00072 Response regulator receiver domain Amir_5699 PF01790 Prolipoprotein diacylglyceryl transferase Amir_5700 PF00290 Tryptophan synthase alpha chain Amir_5701 PF00291 Pyridoxal-phosphate dependent enzyme Amir_5702 PF00218 Indole-3-glycerol phosphate synthase Amir_5704 PF00425 chorismate binding enzyme Amir_5704 PF04715 Anthranilate synthase component I, N terminal region Amir_5705 PF00440 Bacterial regulatory proteins, tetR family Amir_5706 PF01502 Phosphoribosyl-AMP cyclohydrolase Amir_5708 PF00977 Histidine biosynthesis protein Amir_5709 PF02661 Fic/DOC family Amir_5711 PF02861 Clp amino terminal domain, pathogenicity island component Amir_5712 PF00977 Histidine biosynthesis protein Amir_5713 PF00117 Glutamine amidotransferase class-I Amir_5715 PF02779 Transketolase, pyrimidine binding domain Amir_5716 PF00456 Transketolase, thiamine diphosphate binding domain Amir_5717 PF09278 MerR, DNA binding Amir_5717 PF00376 MerR family regulatory protein Amir_5718 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Amir_5720 PF00475 Imidazoleglycerol-phosphate dehydratase Amir_5721 PF00155 Aminotransferase class I and II Amir_5722 PF00815 Histidinol dehydrogenase Amir_5723 PF00246 Zinc carboxypeptidase Amir_5724 PF00266 Aminotransferase class-V Amir_5725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_5726 PF00795 Carbon-nitrogen hydrolase Amir_5728 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Amir_5728 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Amir_5729 PF00890 FAD binding domain Amir_5729 PF02910 Fumarate reductase flavoprotein C-term Amir_5730 PF02445 Quinolinate synthetase A protein Amir_5735 PF07286 Protein of unknown function (DUF1445) Amir_5738 PF04055 Radical SAM superfamily Amir_5738 PF06968 Biotin and Thiamin Synthesis associated domain Amir_5742 PF00202 Aminotransferase class-III Amir_5743 PF07733 Bacterial DNA polymerase III alpha NTPase domain Amir_5743 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Amir_5743 PF02811 PHP domain Amir_5743 PF14579 Helix-hairpin-helix motif Amir_5745 PF07690 Major Facilitator Superfamily Amir_5746 PF00849 RNA pseudouridylate synthase Amir_5747 PF01252 Signal peptidase (SPase) II Amir_5748 PF00266 Aminotransferase class-V Amir_5749 PF02080 TrkA-C domain Amir_5749 PF00999 Sodium/hydrogen exchanger family Amir_5749 PF03471 Transporter associated domain Amir_5752 PF02594 Uncharacterised ACR, YggU family COG1872 Amir_5753 PF08264 Anticodon-binding domain of tRNA Amir_5753 PF00133 tRNA synthetases class I (I, L, M and V) Amir_5755 PF05103 DivIVA protein Amir_5757 PF04472 Cell division protein SepF Amir_5758 PF01168 Alanine racemase, N-terminal domain Amir_5760 PF12327 FtsZ family, C-terminal domain Amir_5760 PF00091 Tubulin/FtsZ family, GTPase domain Amir_5761 PF08478 POTRA domain, FtsQ-type Amir_5762 PF01225 Mur ligase family, catalytic domain Amir_5762 PF08245 Mur ligase middle domain Amir_5762 PF02875 Mur ligase family, glutamate ligase domain Amir_5763 PF03033 Glycosyltransferase family 28 N-terminal domain Amir_5763 PF04101 Glycosyltransferase family 28 C-terminal domain Amir_5764 PF01098 Cell cycle protein Amir_5767 PF08669 Glycine cleavage T-protein C-terminal barrel domain Amir_5767 PF17806 Sarcosine oxidase A3 domain Amir_5767 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_5767 PF01571 Aminomethyltransferase folate-binding domain Amir_5768 PF08245 Mur ligase middle domain Amir_5768 PF02875 Mur ligase family, glutamate ligase domain Amir_5769 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Amir_5769 PF00953 Glycosyl transferase family 4 Amir_5770 PF01225 Mur ligase family, catalytic domain Amir_5770 PF02875 Mur ligase family, glutamate ligase domain Amir_5770 PF08245 Mur ligase middle domain Amir_5771 PF01225 Mur ligase family, catalytic domain Amir_5771 PF02875 Mur ligase family, glutamate ligase domain Amir_5771 PF08245 Mur ligase middle domain Amir_5772 PF03717 Penicillin-binding Protein dimerisation domain Amir_5772 PF00905 Penicillin binding protein transpeptidase domain Amir_5774 PF01795 MraW methylase family Amir_5775 PF02381 MraZ protein, putative antitoxin-like Amir_5776 PF17863 AAA lid domain Amir_5776 PF07726 ATPase family associated with various cellular activities (AAA) Amir_5783 PF00027 Cyclic nucleotide-binding domain Amir_5783 PF13545 Crp-like helix-turn-helix domain Amir_5786 PF03951 Glutamine synthetase, beta-Grasp domain Amir_5786 PF00120 Glutamine synthetase, catalytic domain Amir_5787 PF04542 Sigma-70 region 2 Amir_5787 PF08281 Sigma-70, region 4 Amir_5789 PF13614 AAA domain Amir_5790 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Amir_5790 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Amir_5791 PF01180 Dihydroorotate dehydrogenase Amir_5794 PF00860 Permease family Amir_5798 PF18146 Damage-inducible protein CinA KH domain Amir_5798 PF02464 Competence-damaged protein Amir_5798 PF00994 Probable molybdopterin binding domain Amir_5800 PF00919 Uncharacterized protein family UPF0004 Amir_5800 PF18693 TRAM domain Amir_5800 PF04055 Radical SAM superfamily Amir_5801 PF00583 Acetyltransferase (GNAT) family Amir_5804 PF09397 Ftsk gamma domain Amir_5804 PF01580 FtsK/SpoIIIE family Amir_5804 PF17854 FtsK alpha domain Amir_5804 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Amir_5806 PF17770 Ribonuclease J C-terminal domain Amir_5806 PF12706 Beta-lactamase superfamily domain Amir_5806 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Amir_5807 PF00701 Dihydrodipicolinate synthetase family Amir_5809 PF00069 Protein kinase domain Amir_5811 PF02511 Thymidylate synthase complementing protein Amir_5814 PF00440 Bacterial regulatory proteins, tetR family Amir_5816 PF00248 Aldo/keto reductase family Amir_5817 PF06224 Winged helix DNA-binding domain Amir_5821 PF05173 Dihydrodipicolinate reductase, C-terminus Amir_5821 PF01113 Dihydrodipicolinate reductase, N-terminus Amir_5822 PF00675 Insulinase (Peptidase family M16) Amir_5822 PF05193 Peptidase M16 inactive domain Amir_5823 PF00013 KH domain Amir_5823 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Amir_5823 PF01138 3' exoribonuclease family, domain 1 Amir_5823 PF00575 S1 RNA binding domain Amir_5824 PF00312 Ribosomal protein S15 Amir_5827 PF01687 Riboflavin kinase Amir_5827 PF06574 FAD synthetase Amir_5828 PF16198 tRNA pseudouridylate synthase B C-terminal domain Amir_5828 PF09142 tRNA Pseudouridine synthase II, C terminal Amir_5828 PF01509 TruB family pseudouridylate synthase (N terminal domain) Amir_5829 PF07690 Major Facilitator Superfamily Amir_5831 PF02272 DHHA1 domain Amir_5831 PF01368 DHH family Amir_5832 PF02033 Ribosome-binding factor A Amir_5834 PF00009 Elongation factor Tu GTP binding domain Amir_5834 PF11987 Translation-initiation factor 2 Amir_5834 PF04760 Translation initiation factor IF-2, N-terminal region Amir_5834 PF00009 Elongation factor Tu GTP binding domain Amir_5834 PF11987 Translation-initiation factor 2 Amir_5834 PF04760 Translation initiation factor IF-2, N-terminal region Amir_5836 PF08529 NusA N-terminal domain Amir_5836 PF13184 NusA-like KH domain Amir_5837 PF02576 RimP N-terminal domain Amir_5837 PF17384 RimP C-terminal SH3 domain Amir_5843 PF01894 Uncharacterised protein family UPF0047 Amir_5847 PF03129 Anticodon binding domain Amir_5847 PF04073 Aminoacyl-tRNA editing domain Amir_5847 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Amir_5849 PF03883 Peroxide stress protein YaaA Amir_5850 PF07885 Ion channel Amir_5850 PF00027 Cyclic nucleotide-binding domain Amir_5853 PF00271 Helicase conserved C-terminal domain Amir_5853 PF00270 DEAD/DEAH box helicase Amir_5854 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amir_5854 PF10414 Sirohaem synthase dimerisation region Amir_5855 PF00089 Trypsin Amir_5858 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amir_5859 PF07685 CobB/CobQ-like glutamine amidotransferase domain Amir_5859 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Amir_5860 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Amir_5861 PF17863 AAA lid domain Amir_5861 PF13519 von Willebrand factor type A domain Amir_5861 PF07728 AAA domain (dynein-related subfamily) Amir_5862 PF00106 short chain dehydrogenase Amir_5863 PF00440 Bacterial regulatory proteins, tetR family Amir_5863 PF13305 Tetracyclin repressor-like, C-terminal domain Amir_5864 PF00155 Aminotransferase class I and II Amir_5865 PF13673 Acetyltransferase (GNAT) domain Amir_5866 PF00089 Trypsin Amir_5867 PF01810 LysE type translocator Amir_5868 PF00089 Trypsin Amir_5869 PF00089 Trypsin Amir_5870 PF01435 Peptidase family M48 Amir_5872 PF00132 Bacterial transferase hexapeptide (six repeats) Amir_5873 PF00004 ATPase family associated with various cellular activities (AAA) Amir_5873 PF05362 Lon protease (S16) C-terminal proteolytic domain Amir_5873 PF02190 ATP-dependent protease La (LON) substrate-binding domain Amir_5875 PF01734 Patatin-like phospholipase Amir_5876 PF01522 Polysaccharide deacetylase Amir_5877 PF01161 Phosphatidylethanolamine-binding protein Amir_5878 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Amir_5878 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_5879 PF07690 Major Facilitator Superfamily Amir_5880 PF07729 FCD domain Amir_5880 PF00392 Bacterial regulatory proteins, gntR family Amir_5882 PF00892 EamA-like transporter family Amir_5883 PF07685 CobB/CobQ-like glutamine amidotransferase domain Amir_5883 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Amir_5885 PF00557 Metallopeptidase family M24 Amir_5886 PF00905 Penicillin binding protein transpeptidase domain Amir_5888 PF04551 GcpE protein Amir_5889 PF02163 Peptidase family M50 Amir_5889 PF17820 PDZ domain Amir_5890 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Amir_5890 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Amir_5890 PF13288 DXP reductoisomerase C-terminal domain Amir_5893 PF00196 Bacterial regulatory proteins, luxR family Amir_5893 PF00072 Response regulator receiver domain Amir_5894 PF07730 Histidine kinase Amir_5895 PF00528 Binding-protein-dependent transport system inner membrane component Amir_5896 PF00528 Binding-protein-dependent transport system inner membrane component Amir_5897 PF13416 Bacterial extracellular solute-binding protein Amir_5898 PF00005 ABC transporter Amir_5898 PF08402 TOBE domain Amir_5900 PF03793 PASTA domain Amir_5900 PF00069 Protein kinase domain Amir_5902 PF04055 Radical SAM superfamily Amir_5903 PF03551 Transcriptional regulator PadR-like family Amir_5904 PF00248 Aldo/keto reductase family Amir_5905 PF03551 Transcriptional regulator PadR-like family Amir_5905 PF13847 Methyltransferase domain Amir_5908 PF01765 Ribosome recycling factor Amir_5909 PF00696 Amino acid kinase family Amir_5910 PF00889 Elongation factor TS Amir_5911 PF00318 Ribosomal protein S2 Amir_5912 PF01551 Peptidase family M23 Amir_5913 PF04542 Sigma-70 region 2 Amir_5913 PF04539 Sigma-70 region 3 Amir_5913 PF04545 Sigma-70, region 4 Amir_5914 PF02899 Phage integrase, N-terminal SAM-like domain Amir_5914 PF00589 Phage integrase family Amir_5916 PF13335 Magnesium chelatase, subunit ChlI C-terminal Amir_5916 PF01078 Magnesium chelatase, subunit ChlI Amir_5917 PF02021 Uncharacterised protein family UPF0102 Amir_5918 PF10611 Protein of unknown function (DUF2469) Amir_5919 PF01351 Ribonuclease HII Amir_5920 PF10502 Signal peptidase, peptidase S26 Amir_5921 PF10502 Signal peptidase, peptidase S26 Amir_5922 PF01245 Ribosomal protein L19 Amir_5923 PF01746 tRNA (Guanine-1)-methyltransferase Amir_5924 PF01782 RimM N-terminal domain Amir_5924 PF05239 PRC-barrel domain Amir_5926 PF00886 Ribosomal protein S16 Amir_5927 PF03746 LamB/YcsF family Amir_5929 PF01979 Amidohydrolase family Amir_5930 PF02881 SRP54-type protein, helical bundle domain Amir_5930 PF02978 Signal peptide binding domain Amir_5930 PF00448 SRP54-type protein, GTPase domain Amir_5932 PF08335 GlnD PII-uridylyltransferase Amir_5932 PF01966 HD domain Amir_5933 PF00543 Nitrogen regulatory protein P-II Amir_5934 PF00909 Ammonium Transporter Family Amir_5935 PF08386 TAP-like protein Amir_5935 PF00561 alpha/beta hydrolase fold Amir_5936 PF03561 Allantoicase repeat Amir_5937 PF01979 Amidohydrolase family Amir_5939 PF01014 Uricase Amir_5943 PF01614 Bacterial transcriptional regulator Amir_5943 PF09339 IclR helix-turn-helix domain Amir_5945 PF02881 SRP54-type protein, helical bundle domain Amir_5945 PF00448 SRP54-type protein, GTPase domain Amir_5946 PF03702 Anhydro-N-acetylmuramic acid kinase Amir_5948 PF00583 Acetyltransferase (GNAT) family Amir_5952 PF02463 RecF/RecN/SMC N terminal domain Amir_5952 PF06470 SMC proteins Flexible Hinge Domain Amir_5955 PF00708 Acylphosphatase Amir_5956 PF00188 Cysteine-rich secretory protein family Amir_5959 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_5960 PF00072 Response regulator receiver domain Amir_5960 PF00486 Transcriptional regulatory protein, C terminal Amir_5962 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Amir_5962 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Amir_5962 PF06827 Zinc finger found in FPG and IleRS Amir_5964 PF14622 Ribonuclease-III-like Amir_5964 PF00035 Double-stranded RNA binding motif Amir_5965 PF01783 Ribosomal L32p protein family Amir_5966 PF02620 Large ribosomal RNA subunit accumulation protein YceD Amir_5968 PF01467 Cytidylyltransferase-like Amir_5970 PF12706 Beta-lactamase superfamily domain Amir_5973 PF02785 Biotin carboxylase C-terminal domain Amir_5973 PF00289 Biotin carboxylase, N-terminal domain Amir_5973 PF00364 Biotin-requiring enzyme Amir_5973 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amir_5973 PF00682 HMGL-like Amir_5973 PF02436 Conserved carboxylase domain Amir_5977 PF00270 DEAD/DEAH box helicase Amir_5977 PF00271 Helicase conserved C-terminal domain Amir_5977 PF17191 RecG wedge domain Amir_5978 PF02734 DAK2 domain Amir_5978 PF13684 Dihydroxyacetone kinase family Amir_5979 PF00830 Ribosomal L28 family Amir_5982 PF03167 Uracil DNA glycosylase superfamily Amir_5983 PF00132 Bacterial transferase hexapeptide (six repeats) Amir_5985 PF00586 AIR synthase related protein, N-terminal domain Amir_5985 PF02769 AIR synthase related protein, C-terminal domain Amir_5988 PF07478 D-ala D-ala ligase C-terminus Amir_5988 PF01820 D-ala D-ala ligase N-terminus Amir_5991 PF00392 Bacterial regulatory proteins, gntR family Amir_5997 PF01053 Cys/Met metabolism PLP-dependent enzyme Amir_5998 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Amir_5998 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Amir_6002 PF13089 Polyphosphate kinase N-terminal domain Amir_6002 PF13090 Polyphosphate kinase C-terminal domain 2 Amir_6002 PF02503 Polyphosphate kinase middle domain Amir_6002 PF17941 Polyphosphate kinase C-terminal domain 1 Amir_6003 PF00293 NUDIX domain Amir_6003 PF00300 Histidine phosphatase superfamily (branch 1) Amir_6004 PF00216 Bacterial DNA-binding protein Amir_6005 PF00694 Aconitase C-terminal domain Amir_6006 PF00330 Aconitase family (aconitate hydratase) Amir_6007 PF09339 IclR helix-turn-helix domain Amir_6007 PF01614 Bacterial transcriptional regulator Amir_6009 PF00749 tRNA synthetases class I (E and Q), catalytic domain Amir_6010 PF01494 FAD binding domain Amir_6011 PF01557 Fumarylacetoacetate (FAA) hydrolase family Amir_6013 PF08502 LeuA allosteric (dimerisation) domain Amir_6013 PF00682 HMGL-like Amir_6014 PF00180 Isocitrate/isopropylmalate dehydrogenase Amir_6015 PF13860 FlgD Ig-like domain Amir_6015 PF05922 Peptidase inhibitor I9 Amir_6015 PF02225 PA domain Amir_6015 PF00082 Subtilase family Amir_6017 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Amir_6017 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amir_6017 PF01842 ACT domain Amir_6019 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Amir_6019 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Amir_6020 PF10369 Small subunit of acetolactate synthase Amir_6021 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amir_6021 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Amir_6021 PF00205 Thiamine pyrophosphate enzyme, central domain Amir_6024 PF00920 Dehydratase family Amir_6025 PF07681 DoxX Amir_6027 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Amir_6032 PF02934 GatB/GatE catalytic domain Amir_6032 PF02637 GatB domain Amir_6034 PF01425 Amidase Amir_6035 PF02686 Glu-tRNAGln amidotransferase C subunit Amir_6038 PF03120 NAD-dependent DNA ligase OB-fold domain Amir_6038 PF12826 Helix-hairpin-helix motif Amir_6038 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Amir_6038 PF00533 BRCA1 C Terminus (BRCT) domain Amir_6038 PF01653 NAD-dependent DNA ligase adenylation domain Amir_6040 PF03466 LysR substrate binding domain Amir_6040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_6041 PF03601 Conserved hypothetical protein 698 Amir_6046 PF00266 Aminotransferase class-V Amir_6047 PF07690 Major Facilitator Superfamily Amir_6048 PF01553 Acyltransferase Amir_6050 PF00766 Electron transfer flavoprotein FAD-binding domain Amir_6050 PF01012 Electron transfer flavoprotein domain Amir_6051 PF01012 Electron transfer flavoprotein domain Amir_6052 PF02645 Uncharacterised protein, DegV family COG1307 Amir_6056 PF08241 Methyltransferase domain Amir_6057 PF03065 Glycosyl hydrolase family 57 Amir_6057 PF09210 Domain of unknown function (DUF1957) Amir_6058 PF00534 Glycosyl transferases group 1 Amir_6058 PF13439 Glycosyltransferase Family 4 Amir_6061 PF00132 Bacterial transferase hexapeptide (six repeats) Amir_6062 PF01156 Inosine-uridine preferring nucleoside hydrolase Amir_6063 PF18096 THUMP domain-like Amir_6064 PF01209 ubiE/COQ5 methyltransferase family Amir_6065 PF00378 Enoyl-CoA hydratase/isomerase Amir_6066 PF00005 ABC transporter Amir_6067 PF00128 Alpha amylase, catalytic domain Amir_6067 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Amir_6071 PF00343 Carbohydrate phosphorylase Amir_6071 PF11897 Protein of unknown function (DUF3417) Amir_6072 PF00128 Alpha amylase, catalytic domain Amir_6072 PF11896 Domain of unknown function (DUF3416) Amir_6073 PF16657 Maltogenic Amylase, C-terminal domain Amir_6073 PF00128 Alpha amylase, catalytic domain Amir_6074 PF18085 Maltokinase N-terminal cap domain Amir_6075 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Amir_6075 PF02806 Alpha amylase, C-terminal all-beta domain Amir_6075 PF00128 Alpha amylase, catalytic domain Amir_6076 PF04228 Putative neutral zinc metallopeptidase Amir_6079 PF00085 Thioredoxin Amir_6081 PF01910 Thiamine-binding protein Amir_6082 PF01047 MarR family Amir_6084 PF03176 MMPL family Amir_6084 PF12823 Domain of unknown function (DUF3817) Amir_6085 PF00005 ABC transporter Amir_6090 PF00356 Bacterial regulatory proteins, lacI family Amir_6092 PF00005 ABC transporter Amir_6093 PF02653 Branched-chain amino acid transport system / permease component Amir_6094 PF13407 Periplasmic binding protein domain Amir_6096 PF00561 alpha/beta hydrolase fold Amir_6097 PF00561 alpha/beta hydrolase fold Amir_6098 PF00196 Bacterial regulatory proteins, luxR family Amir_6098 PF00072 Response regulator receiver domain Amir_6099 PF13185 GAF domain Amir_6099 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_6099 PF13492 GAF domain Amir_6099 PF07730 Histidine kinase Amir_6104 PF02803 Thiolase, C-terminal domain Amir_6104 PF00108 Thiolase, N-terminal domain Amir_6113 PF02734 DAK2 domain Amir_6114 PF02733 Dak1 domain Amir_6115 PF00171 Aldehyde dehydrogenase family Amir_6118 PF00474 Sodium:solute symporter family Amir_6124 PF01939 Endonuclease NucS Amir_6127 PF00378 Enoyl-CoA hydratase/isomerase Amir_6128 PF00857 Isochorismatase family Amir_6132 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Amir_6133 PF01923 Cobalamin adenosyltransferase Amir_6135 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Amir_6136 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Amir_6136 PF02874 ATP synthase alpha/beta family, beta-barrel domain Amir_6137 PF00231 ATP synthase Amir_6138 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Amir_6138 PF00306 ATP synthase alpha/beta chain, C terminal domain Amir_6138 PF02874 ATP synthase alpha/beta family, beta-barrel domain Amir_6139 PF00213 ATP synthase delta (OSCP) subunit Amir_6140 PF00430 ATP synthase B/B' CF(0) Amir_6141 PF00137 ATP synthase subunit C Amir_6142 PF00119 ATP synthase A chain Amir_6145 PF00953 Glycosyl transferase family 4 Amir_6146 PF01300 Telomere recombination Amir_6147 PF17827 PrmC N-terminal domain Amir_6147 PF05175 Methyltransferase small domain Amir_6148 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_6148 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Amir_6150 PF00472 RF-1 domain Amir_6150 PF03462 PCRF domain Amir_6151 PF01197 Ribosomal protein L31 Amir_6153 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Amir_6153 PF07497 Rho termination factor, RNA-binding domain Amir_6153 PF07498 Rho termination factor, N-terminal domain Amir_6154 PF00288 GHMP kinases N terminal domain Amir_6155 PF00291 Pyridoxal-phosphate dependent enzyme Amir_6156 PF00742 Homoserine dehydrogenase Amir_6156 PF01842 ACT domain Amir_6156 PF03447 Homoserine dehydrogenase, NAD binding domain Amir_6157 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Amir_6157 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Amir_6158 PF00750 tRNA synthetases class I (R) Amir_6158 PF03485 Arginyl tRNA synthetase N terminal domain Amir_6158 PF05746 DALR anticodon binding domain Amir_6161 PF07971 Glycosyl hydrolase family 92 Amir_6161 PF17678 Glycosyl hydrolase family 92 N-terminal domain Amir_6162 PF01545 Cation efflux family Amir_6166 PF00931 NB-ARC domain Amir_6166 PF03704 Bacterial transcriptional activator domain Amir_6166 PF00486 Transcriptional regulatory protein, C terminal Amir_6167 PF00561 alpha/beta hydrolase fold Amir_6174 PF00296 Luciferase-like monooxygenase Amir_6175 PF03193 RsgA GTPase Amir_6178 PF00248 Aldo/keto reductase family Amir_6179 PF00356 Bacterial regulatory proteins, lacI family Amir_6181 PF16874 Glycosyl hydrolase family 36 C-terminal domain Amir_6181 PF16875 Glycosyl hydrolase family 36 N-terminal domain Amir_6185 PF00005 ABC transporter Amir_6185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_6186 PF00005 ABC transporter Amir_6186 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Amir_6187 PF00528 Binding-protein-dependent transport system inner membrane component Amir_6188 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Amir_6191 PF00296 Luciferase-like monooxygenase Amir_6193 PF01266 FAD dependent oxidoreductase Amir_6194 PF17827 PrmC N-terminal domain Amir_6194 PF05175 Methyltransferase small domain Amir_6195 PF08281 Sigma-70, region 4 Amir_6195 PF04542 Sigma-70 region 2 Amir_6196 PF03795 YCII-related domain Amir_6200 PF08240 Alcohol dehydrogenase GroES-like domain Amir_6200 PF00107 Zinc-binding dehydrogenase Amir_6201 PF00440 Bacterial regulatory proteins, tetR family Amir_6204 PF00480 ROK family Amir_6204 PF01325 Iron dependent repressor, N-terminal DNA binding domain Amir_6205 PF00144 Beta-lactamase Amir_6206 PF00704 Glycosyl hydrolases family 18 Amir_6206 PF00041 Fibronectin type III domain Amir_6206 PF00553 Cellulose binding domain Amir_6207 PF14490 Helix-hairpin-helix containing domain Amir_6207 PF13538 UvrD-like helicase C-terminal domain Amir_6207 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Amir_6208 PF00486 Transcriptional regulatory protein, C terminal Amir_6208 PF00072 Response regulator receiver domain Amir_6209 PF00672 HAMP domain Amir_6209 PF00512 His Kinase A (phospho-acceptor) domain Amir_6209 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_6213 PF00082 Subtilase family Amir_6214 PF00890 FAD binding domain Amir_6215 PF03466 LysR substrate binding domain Amir_6215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_6217 PF01613 Flavin reductase like domain Amir_6221 PF00486 Transcriptional regulatory protein, C terminal Amir_6221 PF00931 NB-ARC domain Amir_6221 PF03704 Bacterial transcriptional activator domain Amir_6223 PF00563 EAL domain Amir_6223 PF00990 Diguanylate cyclase, GGDEF domain Amir_6223 PF03707 Bacterial signalling protein N terminal repeat Amir_6224 PF00595 PDZ domain Amir_6225 PF18158 Adaptive response protein AidB N-terminal domain Amir_6225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_6225 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_6226 PF00378 Enoyl-CoA hydratase/isomerase Amir_6228 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_6228 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_6228 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_6229 PF00364 Biotin-requiring enzyme Amir_6229 PF00289 Biotin carboxylase, N-terminal domain Amir_6229 PF02785 Biotin carboxylase C-terminal domain Amir_6229 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amir_6230 PF01039 Carboxyl transferase domain Amir_6231 PF00440 Bacterial regulatory proteins, tetR family Amir_6235 PF00196 Bacterial regulatory proteins, luxR family Amir_6235 PF00072 Response regulator receiver domain Amir_6239 PF00561 alpha/beta hydrolase fold Amir_6240 PF01053 Cys/Met metabolism PLP-dependent enzyme Amir_6241 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_6241 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_6244 PF00720 Subtilisin inhibitor-like Amir_6245 PF00255 Glutathione peroxidase Amir_6246 PF03315 Serine dehydratase beta chain Amir_6246 PF03313 Serine dehydratase alpha chain Amir_6247 PF01597 Glycine cleavage H-protein Amir_6248 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Amir_6248 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Amir_6250 PF00005 ABC transporter Amir_6252 PF00005 ABC transporter Amir_6252 PF00664 ABC transporter transmembrane region Amir_6253 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Amir_6253 PF16078 2-oxoglutarate dehydrogenase N-terminus Amir_6253 PF00676 Dehydrogenase E1 component Amir_6253 PF16870 2-oxoglutarate dehydrogenase C-terminal Amir_6253 PF02779 Transketolase, pyrimidine binding domain Amir_6256 PF00248 Aldo/keto reductase family Amir_6259 PF00931 NB-ARC domain Amir_6259 PF03704 Bacterial transcriptional activator domain Amir_6259 PF00486 Transcriptional regulatory protein, C terminal Amir_6262 PF01979 Amidohydrolase family Amir_6263 PF01979 Amidohydrolase family Amir_6264 PF01546 Peptidase family M20/M25/M40 Amir_6264 PF07687 Peptidase dimerisation domain Amir_6265 PF17391 Urocanase N-terminal domain Amir_6265 PF01175 Urocanase Rossmann-like domain Amir_6265 PF17392 Urocanase C-terminal domain Amir_6266 PF00221 Aromatic amino acid lyase Amir_6269 PF00528 Binding-protein-dependent transport system inner membrane component Amir_6270 PF00528 Binding-protein-dependent transport system inner membrane component Amir_6271 PF00571 CBS domain Amir_6271 PF00005 ABC transporter Amir_6278 PF00990 Diguanylate cyclase, GGDEF domain Amir_6278 PF08448 PAS fold Amir_6278 PF00563 EAL domain Amir_6278 PF08447 PAS fold Amir_6279 PF00390 Malic enzyme, N-terminal domain Amir_6279 PF03949 Malic enzyme, NAD binding domain Amir_6280 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Amir_6282 PF09055 Nickel-containing superoxide dismutase Amir_6284 PF00300 Histidine phosphatase superfamily (branch 1) Amir_6288 PF00781 Diacylglycerol kinase catalytic domain Amir_6289 PF02467 Transcription factor WhiB Amir_6290 PF07568 Histidine kinase Amir_6290 PF12282 Signal transduction histidine kinase Amir_6290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_6291 PF13490 Putative zinc-finger Amir_6292 PF04542 Sigma-70 region 2 Amir_6292 PF08281 Sigma-70, region 4 Amir_6293 PF04073 Aminoacyl-tRNA editing domain Amir_6295 PF02586 SOS response associated peptidase (SRAP) Amir_6296 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Amir_6297 PF03193 RsgA GTPase Amir_6300 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain Amir_6302 PF00588 SpoU rRNA Methylase family Amir_6302 PF08032 RNA 2'-O ribose methyltransferase substrate binding Amir_6303 PF13419 Haloacid dehalogenase-like hydrolase Amir_6305 PF07517 SecA DEAD-like domain Amir_6305 PF01043 SecA preprotein cross-linking domain Amir_6305 PF07516 SecA Wing and Scaffold domain Amir_6306 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Amir_6306 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Amir_6308 PF10646 Sporulation and spore germination Amir_6308 PF10647 Lipoprotein LpqB beta-propeller domain Amir_6309 PF00672 HAMP domain Amir_6309 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_6309 PF00512 His Kinase A (phospho-acceptor) domain Amir_6310 PF00072 Response regulator receiver domain Amir_6310 PF00486 Transcriptional regulatory protein, C terminal Amir_6311 PF02223 Thymidylate kinase Amir_6321 PF05221 S-adenosyl-L-homocysteine hydrolase Amir_6321 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Amir_6322 PF13520 Amino acid permease Amir_6324 PF01238 Phosphomannose isomerase type I Amir_6327 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Amir_6327 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Amir_6327 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Amir_6327 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Amir_6331 PF02467 Transcription factor WhiB Amir_6334 PF00881 Nitroreductase family Amir_6334 PF01996 F420-0:Gamma-glutamyl ligase Amir_6337 PF00483 Nucleotidyl transferase Amir_6341 PF00534 Glycosyl transferases group 1 Amir_6341 PF13439 Glycosyltransferase Family 4 Amir_6345 PF13439 Glycosyltransferase Family 4 Amir_6345 PF00534 Glycosyl transferases group 1 Amir_6346 PF04321 RmlD substrate binding domain Amir_6347 PF16363 GDP-mannose 4,6 dehydratase Amir_6348 PF03816 Cell envelope-related transcriptional attenuator domain Amir_6348 PF13399 LytR cell envelope-related transcriptional attenuator Amir_6349 PF03816 Cell envelope-related transcriptional attenuator domain Amir_6349 PF13399 LytR cell envelope-related transcriptional attenuator Amir_6351 PF07681 DoxX Amir_6358 PF07702 UTRA domain Amir_6358 PF00392 Bacterial regulatory proteins, gntR family Amir_6364 PF12167 Arm DNA-binding domain Amir_6364 PF00589 Phage integrase family Amir_6366 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_6366 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_6366 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_6367 PF00731 AIR carboxylase Amir_6368 PF02222 ATP-grasp domain Amir_6368 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Amir_6370 PF08402 TOBE domain Amir_6370 PF00005 ABC transporter Amir_6371 PF07729 FCD domain Amir_6371 PF00392 Bacterial regulatory proteins, gntR family Amir_6379 PF00459 Inositol monophosphatase family Amir_6380 PF00486 Transcriptional regulatory protein, C terminal Amir_6380 PF00072 Response regulator receiver domain Amir_6381 PF00672 HAMP domain Amir_6381 PF00512 His Kinase A (phospho-acceptor) domain Amir_6381 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_6387 PF00682 HMGL-like Amir_6389 PF03099 Biotin/lipoate A/B protein ligase family Amir_6389 PF08279 HTH domain Amir_6389 PF02237 Biotin protein ligase C terminal domain Amir_6390 PF01039 Carboxyl transferase domain Amir_6393 PF02545 Maf-like protein Amir_6394 PF00375 Sodium:dicarboxylate symporter family Amir_6396 PF00364 Biotin-requiring enzyme Amir_6396 PF00289 Biotin carboxylase, N-terminal domain Amir_6396 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Amir_6396 PF02785 Biotin carboxylase C-terminal domain Amir_6404 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Amir_6404 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_6405 PF00072 Response regulator receiver domain Amir_6405 PF00196 Bacterial regulatory proteins, luxR family Amir_6406 PF07730 Histidine kinase Amir_6407 PF00005 ABC transporter Amir_6409 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Amir_6409 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Amir_6410 PF00230 Major intrinsic protein Amir_6411 PF01266 FAD dependent oxidoreductase Amir_6411 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Amir_6414 PF04107 Glutamate-cysteine ligase family 2(GCS2) Amir_6414 PF01546 Peptidase family M20/M25/M40 Amir_6418 PF01642 Methylmalonyl-CoA mutase Amir_6418 PF02310 B12 binding domain Amir_6419 PF01642 Methylmalonyl-CoA mutase Amir_6420 PF00069 Protein kinase domain Amir_6421 PF01048 Phosphorylase superfamily Amir_6422 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Amir_6422 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Amir_6422 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Amir_6422 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Amir_6425 PF13411 MerR HTH family regulatory protein Amir_6426 PF02661 Fic/DOC family Amir_6430 PF00400 WD domain, G-beta repeat Amir_6430 PF00805 Pentapeptide repeats (8 copies) Amir_6430 PF05729 NACHT domain Amir_6432 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_6432 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_6437 PF00931 NB-ARC domain Amir_6437 PF00486 Transcriptional regulatory protein, C terminal Amir_6437 PF03704 Bacterial transcriptional activator domain Amir_6442 PF00877 NlpC/P60 family Amir_6446 PF00962 Adenosine/AMP deaminase Amir_6449 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Amir_6449 PF00591 Glycosyl transferase family, a/b domain Amir_6449 PF02885 Glycosyl transferase family, helical bundle domain Amir_6450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Amir_6462 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Amir_6464 PF02910 Fumarate reductase flavoprotein C-term Amir_6464 PF00890 FAD binding domain Amir_6465 PF13085 2Fe-2S iron-sulfur cluster binding domain Amir_6466 PF07943 Penicillin-binding protein 5, C-terminal domain Amir_6466 PF00768 D-alanyl-D-alanine carboxypeptidase Amir_6469 PF03631 Virulence factor BrkB Amir_6470 PF00579 tRNA synthetases class I (W and Y) Amir_6472 PF04055 Radical SAM superfamily Amir_6475 PF03372 Endonuclease/Exonuclease/phosphatase family Amir_6478 PF00180 Isocitrate/isopropylmalate dehydrogenase Amir_6481 PF00226 DnaJ domain Amir_6481 PF01556 DnaJ C terminal domain Amir_6481 PF00684 DnaJ central domain Amir_6482 PF00069 Protein kinase domain Amir_6482 PF13191 AAA ATPase domain Amir_6487 PF00005 ABC transporter Amir_6490 PF00440 Bacterial regulatory proteins, tetR family Amir_6490 PF13305 Tetracyclin repressor-like, C-terminal domain Amir_6492 PF00056 lactate/malate dehydrogenase, NAD binding domain Amir_6492 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Amir_6498 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Amir_6498 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Amir_6503 PF01808 AICARFT/IMPCHase bienzyme Amir_6503 PF02142 MGS-like domain Amir_6504 PF00551 Formyl transferase Amir_6507 PF02629 CoA binding domain Amir_6507 PF00549 CoA-ligase Amir_6508 PF00549 CoA-ligase Amir_6508 PF08442 ATP-grasp domain Amir_6511 PF01551 Peptidase family M23 Amir_6513 PF00580 UvrD/REP helicase N-terminal domain Amir_6513 PF13361 UvrD-like helicase C-terminal domain Amir_6514 PF01817 Chorismate mutase type II Amir_6515 PF00850 Histone deacetylase domain Amir_6520 PF00069 Protein kinase domain Amir_6520 PF03793 PASTA domain Amir_6521 PF00069 Protein kinase domain Amir_6522 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_6522 PF03466 LysR substrate binding domain Amir_6523 PF00892 EamA-like transporter family Amir_6524 PF04686 Streptomyces sporulation and cell division protein, SsgA Amir_6525 PF00196 Bacterial regulatory proteins, luxR family Amir_6525 PF00072 Response regulator receiver domain Amir_6529 PF00958 GMP synthase C terminal domain Amir_6529 PF02540 NAD synthase Amir_6529 PF00117 Glutamine amidotransferase class-I Amir_6531 PF00171 Aldehyde dehydrogenase family Amir_6532 PF05199 GMC oxidoreductase Amir_6534 PF00478 IMP dehydrogenase / GMP reductase domain Amir_6535 PF00478 IMP dehydrogenase / GMP reductase domain Amir_6535 PF00571 CBS domain Amir_6536 PF17252 Family of unknown function (DUF5319) Amir_6538 PF08281 Sigma-70, region 4 Amir_6538 PF04542 Sigma-70 region 2 Amir_6539 PF00072 Response regulator receiver domain Amir_6539 PF00196 Bacterial regulatory proteins, luxR family Amir_6542 PF02467 Transcription factor WhiB Amir_6543 PF00118 TCP-1/cpn60 chaperonin family Amir_6544 PF00166 Chaperonin 10 Kd subunit Amir_6546 PF00814 Glycoprotease family Amir_6547 PF00583 Acetyltransferase (GNAT) family Amir_6548 PF00814 Glycoprotease family Amir_6550 PF00085 Thioredoxin Amir_6551 PF00501 AMP-binding enzyme Amir_6551 PF13193 AMP-binding enzyme C-terminal domain Amir_6554 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Amir_6556 PF00842 Alanine racemase, C-terminal domain Amir_6556 PF01168 Alanine racemase, N-terminal domain Amir_6557 PF03853 YjeF-related protein N-terminus Amir_6557 PF01256 Carbohydrate kinase Amir_6558 PF01380 SIS domain Amir_6563 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Amir_6563 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Amir_6563 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Amir_6563 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Amir_6564 PF00380 Ribosomal protein S9/S16 Amir_6565 PF00572 Ribosomal protein L13 Amir_6569 PF00012 Hsp70 protein Amir_6571 PF01580 FtsK/SpoIIIE family Amir_6572 PF08817 WXG100 protein secretion system (Wss), protein YukD Amir_6573 PF00082 Subtilase family Amir_6576 PF05108 Type VII secretion system ESX-1, transport TM domain B Amir_6580 PF05922 Peptidase inhibitor I9 Amir_6580 PF00082 Subtilase family Amir_6580 PF04151 Bacterial pre-peptidase C-terminal domain Amir_6581 PF01416 tRNA pseudouridine synthase Amir_6582 PF01196 Ribosomal protein L17 Amir_6583 PF01000 RNA polymerase Rpb3/RpoA insert domain Amir_6583 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Amir_6583 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Amir_6584 PF01479 S4 domain Amir_6584 PF00163 Ribosomal protein S4/S9 N-terminal domain Amir_6585 PF00411 Ribosomal protein S11 Amir_6586 PF00416 Ribosomal protein S13/S18 Amir_6587 PF00444 Ribosomal protein L36 Amir_6588 PF01176 Translation initiation factor 1A / IF-1 Amir_6592 PF00557 Metallopeptidase family M24 Amir_6594 PF00344 SecY translocase Amir_6595 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Amir_6596 PF00327 Ribosomal protein L30p/L7e Amir_6597 PF00333 Ribosomal protein S5, N-terminal domain Amir_6597 PF03719 Ribosomal protein S5, C-terminal domain Amir_6598 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Amir_6599 PF00347 Ribosomal protein L6 Amir_6600 PF00410 Ribosomal protein S8 Amir_6601 PF00253 Ribosomal protein S14p/S29e Amir_6602 PF00281 Ribosomal protein L5 Amir_6602 PF00673 ribosomal L5P family C-terminus Amir_6603 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Amir_6603 PF00467 KOW motif Amir_6604 PF00238 Ribosomal protein L14p/L23e Amir_6605 PF00366 Ribosomal protein S17 Amir_6606 PF00831 Ribosomal L29 protein Amir_6607 PF00252 Ribosomal protein L16p/L10e Amir_6608 PF00189 Ribosomal protein S3, C-terminal domain Amir_6608 PF07650 KH domain Amir_6609 PF00237 Ribosomal protein L22p/L17e Amir_6610 PF00203 Ribosomal protein S19 Amir_6611 PF00181 Ribosomal Proteins L2, RNA binding domain Amir_6611 PF03947 Ribosomal Proteins L2, C-terminal domain Amir_6612 PF00276 Ribosomal protein L23 Amir_6613 PF00573 Ribosomal protein L4/L1 family Amir_6614 PF00297 Ribosomal protein L3 Amir_6615 PF00338 Ribosomal protein S10p/S20e Amir_6616 PF03143 Elongation factor Tu C-terminal domain Amir_6616 PF03144 Elongation factor Tu domain 2 Amir_6616 PF00009 Elongation factor Tu GTP binding domain Amir_6617 PF00679 Elongation factor G C-terminus Amir_6617 PF14492 Elongation Factor G, domain II Amir_6617 PF00009 Elongation factor Tu GTP binding domain Amir_6617 PF03144 Elongation factor Tu domain 2 Amir_6617 PF03764 Elongation factor G, domain IV Amir_6618 PF00177 Ribosomal protein S7p/S5e Amir_6619 PF00164 Ribosomal protein S12/S23 Amir_6624 PF18085 Maltokinase N-terminal cap domain Amir_6624 PF01636 Phosphotransferase enzyme family Amir_6626 PF00623 RNA polymerase Rpb1, domain 2 Amir_6626 PF04997 RNA polymerase Rpb1, domain 1 Amir_6626 PF04998 RNA polymerase Rpb1, domain 5 Amir_6626 PF05000 RNA polymerase Rpb1, domain 4 Amir_6626 PF04983 RNA polymerase Rpb1, domain 3 Amir_6627 PF04560 RNA polymerase Rpb2, domain 7 Amir_6627 PF00562 RNA polymerase Rpb2, domain 6 Amir_6627 PF04563 RNA polymerase beta subunit Amir_6627 PF04561 RNA polymerase Rpb2, domain 2 Amir_6627 PF04565 RNA polymerase Rpb2, domain 3 Amir_6627 PF10385 RNA polymerase beta subunit external 1 domain Amir_6633 PF02405 Permease MlaE Amir_6635 PF00005 ABC transporter Amir_6636 PF00542 Ribosomal protein L7/L12 C-terminal domain Amir_6636 PF16320 Ribosomal protein L7/L12 dimerisation domain Amir_6637 PF00466 Ribosomal protein L10 Amir_6639 PF00687 Ribosomal protein L1p/L10e family Amir_6640 PF00298 Ribosomal protein L11, RNA binding domain Amir_6640 PF03946 Ribosomal protein L11, N-terminal domain Amir_6641 PF02357 Transcription termination factor nusG Amir_6642 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Amir_6643 PF00155 Aminotransferase class I and II Amir_6646 PF01575 MaoC like domain Amir_6647 PF13452 N-terminal half of MaoC dehydratase Amir_6648 PF00471 Ribosomal protein L33 Amir_6649 PF03707 Bacterial signalling protein N terminal repeat Amir_6649 PF00563 EAL domain Amir_6649 PF00990 Diguanylate cyclase, GGDEF domain Amir_6653 PF04461 Protein of unknown function (DUF520) Amir_6654 PF00483 Nucleotidyl transferase Amir_6655 PF01435 Peptidase family M48 Amir_6656 PF00037 4Fe-4S binding domain Amir_6657 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Amir_6657 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Amir_6658 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Amir_6662 PF01037 Lrp/AsnC ligand binding domain Amir_6663 PF00378 Enoyl-CoA hydratase/isomerase Amir_6664 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Amir_6664 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Amir_6664 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Amir_6665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amir_6667 PF00892 EamA-like transporter family Amir_6668 PF00348 Polyprenyl synthetase Amir_6669 PF00361 Proton-conducting membrane transporter Amir_6670 PF00361 Proton-conducting membrane transporter Amir_6671 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Amir_6671 PF00361 Proton-conducting membrane transporter Amir_6672 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Amir_6673 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Amir_6674 PF12838 4Fe-4S dicluster domain Amir_6675 PF00146 NADH dehydrogenase Amir_6676 PF00384 Molybdopterin oxidoreductase Amir_6676 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Amir_6676 PF01568 Molydopterin dinucleotide binding domain Amir_6677 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Amir_6677 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Amir_6677 PF10531 SLBB domain Amir_6679 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Amir_6680 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Amir_6681 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Amir_6682 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Amir_6683 PF01494 FAD binding domain Amir_6684 PF01209 ubiE/COQ5 methyltransferase family Amir_6685 PF00459 Inositol monophosphatase family Amir_6688 PF00111 2Fe-2S iron-sulfur cluster binding domain Amir_6688 PF00970 Oxidoreductase FAD-binding domain Amir_6688 PF00175 Oxidoreductase NAD-binding domain Amir_6689 PF01883 Iron-sulfur cluster assembly protein Amir_6690 PF05138 Phenylacetic acid catabolic protein Amir_6691 PF06243 Phenylacetic acid degradation B Amir_6692 PF05138 Phenylacetic acid catabolic protein Amir_6694 PF00425 chorismate binding enzyme Amir_6695 PF03747 ADP-ribosylglycohydrolase Amir_6698 PF01040 UbiA prenyltransferase family Amir_6700 PF13193 AMP-binding enzyme C-terminal domain Amir_6700 PF00501 AMP-binding enzyme Amir_6701 PF00378 Enoyl-CoA hydratase/isomerase Amir_6702 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amir_6702 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Amir_6703 PF11838 ERAP1-like C-terminal domain Amir_6703 PF01433 Peptidase family M1 domain Amir_6712 PF01578 Cytochrome C assembly protein Amir_6713 PF05140 ResB-like family Amir_6714 PF02683 Cytochrome C biogenesis protein transmembrane region Amir_6716 PF08240 Alcohol dehydrogenase GroES-like domain Amir_6716 PF00107 Zinc-binding dehydrogenase Amir_6718 PF00300 Histidine phosphatase superfamily (branch 1) Amir_6719 PF00202 Aminotransferase class-III Amir_6727 PF00490 Delta-aminolevulinic acid dehydratase Amir_6728 PF14824 Sirohaem biosynthesis protein central Amir_6728 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Amir_6728 PF10414 Sirohaem synthase dimerisation region Amir_6729 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Amir_6729 PF03900 Porphobilinogen deaminase, C-terminal domain Amir_6730 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Amir_6730 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Amir_6730 PF01488 Shikimate / quinate 5-dehydrogenase Amir_6731 PF02629 CoA binding domain Amir_6731 PF06971 Putative DNA-binding protein N-terminus Amir_6732 PF02469 Fasciclin domain Amir_6734 PF05768 Glutaredoxin-like domain (DUF836) Amir_6735 PF00501 AMP-binding enzyme Amir_6735 PF13193 AMP-binding enzyme C-terminal domain Amir_6736 PF04542 Sigma-70 region 2 Amir_6736 PF08281 Sigma-70, region 4 Amir_6739 PF01553 Acyltransferase Amir_6740 PF01370 NAD dependent epimerase/dehydratase family Amir_6741 PF08213 Mitochondrial domain of unknown function (DUF1713) Amir_6742 PF12728 Helix-turn-helix domain Amir_6743 PF03807 NADP oxidoreductase coenzyme F420-dependent Amir_6743 PF14748 Pyrroline-5-carboxylate reductase dimerisation Amir_6746 PF01261 Xylose isomerase-like TIM barrel Amir_6748 PF02541 Ppx/GppA phosphatase family Amir_6749 PF00072 Response regulator receiver domain Amir_6749 PF00486 Transcriptional regulatory protein, C terminal Amir_6750 PF00512 His Kinase A (phospho-acceptor) domain Amir_6750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Amir_6751 PF00248 Aldo/keto reductase family Amir_6752 PF00196 Bacterial regulatory proteins, luxR family Amir_6753 PF00300 Histidine phosphatase superfamily (branch 1) Amir_6754 PF00501 AMP-binding enzyme Amir_6754 PF13193 AMP-binding enzyme C-terminal domain Amir_6756 PF10722 Putative bacterial sensory transduction regulator Amir_6757 PF00534 Glycosyl transferases group 1 Amir_6757 PF13439 Glycosyltransferase Family 4 Amir_6758 PF03734 L,D-transpeptidase catalytic domain Amir_6758 PF17964 Bacterial Ig domain Amir_6759 PF00106 short chain dehydrogenase Amir_6761 PF01565 FAD binding domain Amir_6761 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Amir_6765 PF00551 Formyl transferase Amir_6767 PF13977 BetI-type transcriptional repressor, C-terminal Amir_6767 PF00440 Bacterial regulatory proteins, tetR family Amir_6769 PF07739 TipAS antibiotic-recognition domain Amir_6769 PF13411 MerR HTH family regulatory protein Amir_6770 PF01965 DJ-1/PfpI family Amir_6772 PF10724 Protein of unknown function (DUF2516) Amir_6774 PF01381 Helix-turn-helix Amir_6776 PF04286 Protein of unknown function (DUF445) Amir_6777 PF00155 Aminotransferase class I and II Amir_6782 PF00005 ABC transporter Amir_6790 PF00392 Bacterial regulatory proteins, gntR family Amir_6790 PF00155 Aminotransferase class I and II Amir_6798 PF00403 Heavy-metal-associated domain Amir_6800 PF00313 'Cold-shock' DNA-binding domain Amir_6801 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amir_6804 PF17864 RuvB AAA lid domain Amir_6804 PF05491 RuvB C-terminal winged helix domain Amir_6804 PF05496 Holliday junction DNA helicase RuvB P-loop domain Amir_6807 PF08240 Alcohol dehydrogenase GroES-like domain Amir_6807 PF00107 Zinc-binding dehydrogenase Amir_6811 PF01207 Dihydrouridine synthase (Dus) Amir_6813 PF00990 Diguanylate cyclase, GGDEF domain Amir_6813 PF00072 Response regulator receiver domain Amir_6814 PF03816 Cell envelope-related transcriptional attenuator domain Amir_6815 PF01895 PhoU domain Amir_6818 PF00005 ABC transporter Amir_6819 PF00528 Binding-protein-dependent transport system inner membrane component Amir_6820 PF00528 Binding-protein-dependent transport system inner membrane component Amir_6821 PF12849 PBP superfamily domain Amir_6822 PF00583 Acetyltransferase (GNAT) family Amir_6823 PF00486 Transcriptional regulatory protein, C terminal Amir_6828 PF00581 Rhodanese-like domain Amir_6829 PF07210 Protein of unknown function (DUF1416) Amir_6831 PF08768 Domain of unknown function (DUF1794) Amir_6832 PF02682 Carboxyltransferase domain, subdomain C and D Amir_6836 PF01475 Ferric uptake regulator family Amir_6837 PF01571 Aminomethyltransferase folate-binding domain Amir_6840 PF07690 Major Facilitator Superfamily Amir_6846 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Amir_6846 PF00205 Thiamine pyrophosphate enzyme, central domain Amir_6846 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Amir_6847 PF04962 KduI/IolB family Amir_6849 PF00005 ABC transporter Amir_6850 PF02653 Branched-chain amino acid transport system / permease component Amir_6852 PF01261 Xylose isomerase-like TIM barrel Amir_6853 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Amir_6853 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Amir_6854 PF00356 Bacterial regulatory proteins, lacI family Amir_6855 PF03462 PCRF domain Amir_6855 PF00472 RF-1 domain Amir_6858 PF00586 AIR synthase related protein, N-terminal domain Amir_6858 PF02769 AIR synthase related protein, C-terminal domain Amir_6859 PF00156 Phosphoribosyl transferase domain Amir_6862 PF06259 Alpha/beta hydrolase Amir_6870 PF00107 Zinc-binding dehydrogenase Amir_6870 PF08240 Alcohol dehydrogenase GroES-like domain Amir_6871 PF03707 Bacterial signalling protein N terminal repeat Amir_6871 PF00563 EAL domain Amir_6871 PF00990 Diguanylate cyclase, GGDEF domain Amir_6875 PF01183 Glycosyl hydrolases family 25 Amir_6876 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Amir_6876 PF00586 AIR synthase related protein, N-terminal domain Amir_6876 PF02769 AIR synthase related protein, C-terminal domain Amir_6878 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Amir_6883 PF01259 SAICAR synthetase Amir_6884 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amir_6885 PF00528 Binding-protein-dependent transport system inner membrane component Amir_6886 PF00005 ABC transporter Amir_6888 PF10397 Adenylosuccinate lyase C-terminus Amir_6888 PF00206 Lyase Amir_6890 PF08281 Sigma-70, region 4 Amir_6890 PF04542 Sigma-70 region 2 Amir_6893 PF08281 Sigma-70, region 4 Amir_6893 PF04542 Sigma-70 region 2 Amir_6894 PF01212 Beta-eliminating lyase Amir_6895 PF13419 Haloacid dehalogenase-like hydrolase Amir_6903 PF02844 Phosphoribosylglycinamide synthetase, N domain Amir_6903 PF02843 Phosphoribosylglycinamide synthetase, C domain Amir_6903 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Amir_6906 PF03009 Glycerophosphoryl diester phosphodiesterase family Amir_6907 PF00296 Luciferase-like monooxygenase Amir_6908 PF00709 Adenylosuccinate synthetase Amir_6917 PF01116 Fructose-bisphosphate aldolase class-II Amir_6919 PF00248 Aldo/keto reductase family Amir_6922 PF08281 Sigma-70, region 4 Amir_6922 PF04542 Sigma-70 region 2 Amir_6924 PF01979 Amidohydrolase family Amir_6926 PF09335 SNARE associated Golgi protein Amir_6927 PF01565 FAD binding domain Amir_6927 PF02913 FAD linked oxidases, C-terminal domain Amir_6928 PF09335 SNARE associated Golgi protein Amir_6930 PF00294 pfkB family carbohydrate kinase Amir_6931 PF00356 Bacterial regulatory proteins, lacI family Amir_6936 PF00156 Phosphoribosyl transferase domain Amir_6941 PF00106 short chain dehydrogenase Amir_6943 PF02861 Clp amino terminal domain, pathogenicity island component Amir_6943 PF07724 AAA domain (Cdc48 subfamily) Amir_6943 PF00004 ATPase family associated with various cellular activities (AAA) Amir_6943 PF10431 C-terminal, D2-small domain, of ClpB protein Amir_6943 PF17871 AAA lid domain Amir_6945 PF00970 Oxidoreductase FAD-binding domain Amir_6945 PF00175 Oxidoreductase NAD-binding domain Amir_6945 PF00111 2Fe-2S iron-sulfur cluster binding domain Amir_6946 PF13411 MerR HTH family regulatory protein Amir_6947 PF01556 DnaJ C terminal domain Amir_6947 PF00226 DnaJ domain Amir_6947 PF00684 DnaJ central domain Amir_6948 PF01025 GrpE Amir_6949 PF00012 Hsp70 protein Amir_6952 PF00893 Small Multidrug Resistance protein Amir_6953 PF13183 4Fe-4S dicluster domain Amir_6953 PF02665 Nitrate reductase gamma subunit Amir_6953 PF02754 Cysteine-rich domain Amir_6954 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV Amir_6959 PF00692 dUTPase Amir_6962 PF00196 Bacterial regulatory proteins, luxR family Amir_6962 PF00072 Response regulator receiver domain Amir_6963 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_6963 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_6963 PF12806 Acetyl-CoA dehydrogenase C-terminal like Amir_6963 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_6966 PF00166 Chaperonin 10 Kd subunit Amir_6967 PF02683 Cytochrome C biogenesis protein transmembrane region Amir_6967 PF00578 AhpC/TSA family Amir_6967 PF17991 Thioredoxin like C-terminal domain Amir_6972 PF02803 Thiolase, C-terminal domain Amir_6972 PF00108 Thiolase, N-terminal domain Amir_6977 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Amir_6977 PF02770 Acyl-CoA dehydrogenase, middle domain Amir_6977 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Amir_6979 PF00440 Bacterial regulatory proteins, tetR family Amir_6979 PF08362 YcdC-like protein, C-terminal region Amir_6980 PF13411 MerR HTH family regulatory protein Amir_6981 PF02817 e3 binding domain Amir_6981 PF00364 Biotin-requiring enzyme Amir_6981 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Amir_6982 PF02779 Transketolase, pyrimidine binding domain Amir_6982 PF02780 Transketolase, C-terminal domain Amir_6983 PF00676 Dehydrogenase E1 component Amir_6984 PF01546 Peptidase family M20/M25/M40 Amir_6984 PF07687 Peptidase dimerisation domain Amir_6986 PF00497 Bacterial extracellular solute-binding proteins, family 3 Amir_6987 PF00528 Binding-protein-dependent transport system inner membrane component Amir_6988 PF00005 ABC transporter Amir_6994 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain Amir_6994 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain Amir_6999 PF00474 Sodium:solute symporter family Amir_7000 PF00480 ROK family Amir_7006 PF00350 Dynamin family Amir_7008 PF07730 Histidine kinase Amir_7009 PF00072 Response regulator receiver domain Amir_7009 PF00196 Bacterial regulatory proteins, luxR family Amir_7013 PF00011 Hsp20/alpha crystallin family Amir_7014 PF07730 Histidine kinase Amir_7016 PF02390 Putative methyltransferase Amir_7018 PF00082 Subtilase family Amir_7020 PF00005 ABC transporter Amir_7024 PF01979 Amidohydrolase family Amir_7025 PF00106 short chain dehydrogenase Amir_7028 PF07690 Major Facilitator Superfamily Amir_7029 PF13419 Haloacid dehalogenase-like hydrolase Amir_7031 PF01658 Myo-inositol-1-phosphate synthase Amir_7033 PF17249 Family of unknown function (DUF5318) Amir_7034 PF00905 Penicillin binding protein transpeptidase domain Amir_7034 PF00912 Transglycosylase Amir_7037 PF01261 Xylose isomerase-like TIM barrel Amir_7039 PF01250 Ribosomal protein S6 Amir_7040 PF00436 Single-strand binding protein family Amir_7041 PF01084 Ribosomal protein S18 Amir_7042 PF01281 Ribosomal protein L9, N-terminal domain Amir_7042 PF03948 Ribosomal protein L9, C-terminal domain Amir_7043 PF00772 DnaB-like helicase N terminal domain Amir_7043 PF03796 DnaB-like helicase C terminal domain Amir_7048 PF00990 Diguanylate cyclase, GGDEF domain Amir_7048 PF00563 EAL domain Amir_7048 PF00360 Phytochrome region Amir_7048 PF01590 GAF domain Amir_7052 PF01594 AI-2E family transporter Amir_7053 PF00072 Response regulator receiver domain Amir_7053 PF00990 Diguanylate cyclase, GGDEF domain Amir_7055 PF00196 Bacterial regulatory proteins, luxR family Amir_7055 PF00072 Response regulator receiver domain Amir_7062 PF13460 NAD(P)H-binding Amir_7062 PF11066 Protein of unknown function (DUF2867) Amir_7063 PF00107 Zinc-binding dehydrogenase Amir_7063 PF08240 Alcohol dehydrogenase GroES-like domain Amir_7064 PF00155 Aminotransferase class I and II Amir_7065 PF03466 LysR substrate binding domain Amir_7065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Amir_7069 PF02896 PEP-utilising enzyme, TIM barrel domain Amir_7069 PF00391 PEP-utilising enzyme, mobile domain Amir_7069 PF05524 PEP-utilising enzyme, N-terminal Amir_7070 PF00294 pfkB family carbohydrate kinase Amir_7072 PF03176 MMPL family Amir_7073 PF00440 Bacterial regulatory proteins, tetR family Amir_7073 PF13305 Tetracyclin repressor-like, C-terminal domain Amir_7074 PF08264 Anticodon-binding domain of tRNA Amir_7074 PF13603 Leucyl-tRNA synthetase, Domain 2 Amir_7074 PF09334 tRNA synthetases class I (M) Amir_7076 PF02622 Uncharacterized ACR, COG1678 Amir_7077 PF07690 Major Facilitator Superfamily Amir_7079 PF12627 Probable RNA and SrmB- binding site of polymerase A Amir_7079 PF01743 Poly A polymerase head domain Amir_7079 PF13735 tRNA nucleotidyltransferase domain 2 putative Amir_7080 PF00293 NUDIX domain Amir_7082 PF03023 Lipid II flippase MurJ Amir_7083 PF03793 PASTA domain Amir_7083 PF00069 Protein kinase domain Amir_7084 PF08281 Sigma-70, region 4 Amir_7084 PF04542 Sigma-70 region 2 Amir_7086 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_7087 PF00085 Thioredoxin Amir_7087 PF07992 Pyridine nucleotide-disulphide oxidoreductase Amir_7088 PF01520 N-acetylmuramoyl-L-alanine amidase Amir_7088 PF01471 Putative peptidoglycan binding domain Amir_7090 PF00392 Bacterial regulatory proteins, gntR family Amir_7090 PF00155 Aminotransferase class I and II Amir_7091 PF07478 D-ala D-ala ligase C-terminus Amir_7091 PF01820 D-ala D-ala ligase N-terminus Amir_7092 PF17762 HTH domain found in ParB protein Amir_7092 PF02195 ParB-like nuclease domain Amir_7093 PF13614 AAA domain Amir_7094 PF02527 rRNA small subunit methyltransferase G Amir_7095 PF00293 NUDIX domain Amir_7097 PF02096 60Kd inner membrane protein Amir_7098 PF01809 Putative membrane protein insertion efficiency factor Amir_7099 PF00825 Ribonuclease P Amir_7100 PF00468 Ribosomal protein L34