Amir_0001 SM00382 ATPases associated with a variety of cellular activities Amir_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain Amir_0002 SM00480 DNA polymerase III beta subunit Amir_0003 SM01350 Amir_0003 Amir_0006 SM00387 Histidine kinase-like ATPases Amir_0006 SM00433 TopoisomeraseII Amir_0007 SM00434 DNA Topoisomerase IV Amir_0021 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_0021 SM00740 Amir_0021 Amir_0022 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_0025 SM00331 Sigma factor PP2C-like phosphatases Amir_0025 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Amir_0026 SM00240 Forkhead associated domain Amir_0027 SM00240 Forkhead associated domain Amir_0037 SM00028 Tetratricopeptide repeats Amir_0037 SM00530 Helix-turn-helix XRE-family like proteins Amir_0047 SM00822 Amir_0047 Amir_0064 SM00387 Histidine kinase-like ATPases Amir_0067 SM00448 cheY-homologous receiver domain Amir_0067 SM00850 LytTr DNA-binding domain Amir_0074 SM00450 Rhodanese Homology Domain Amir_0091 SM00346 helix_turn_helix isocitrate lyase regulation Amir_0094 SM00255 Toll - interleukin 1 - resistance Amir_0095 SM00382 ATPases associated with a variety of cellular activities Amir_0096 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_0096 SM00387 Histidine kinase-like ATPases Amir_0097 SM00421 helix_turn_helix, Lux Regulon Amir_0097 SM00448 cheY-homologous receiver domain Amir_0101 SM00855 Phosphoglycerate mutase family Amir_0107 SM00530 Helix-turn-helix XRE-family like proteins Amir_0110 SM00458 Ricin-type beta-trefoil Amir_0110 SM00606 Cellulose Binding Domain Type IV Amir_0133 SM00382 ATPases associated with a variety of cellular activities Amir_0139 SM00829 Enoylreductase Amir_0144 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_0182 SM00530 Helix-turn-helix XRE-family like proteins Amir_0185 SM00530 Helix-turn-helix XRE-family like proteins Amir_0194 SM00530 Helix-turn-helix XRE-family like proteins Amir_0198 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_0198 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_0199 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_0199 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_0201 SM00382 ATPases associated with a variety of cellular activities Amir_0203 SM00493 Amir_0203 Amir_0205 SM00028 Tetratricopeptide repeats Amir_0205 SM00862 Transcriptional regulatory protein, C terminal Amir_0205 SM01043 Bacterial transcriptional activator domain Amir_0209 SM00382 ATPases associated with a variety of cellular activities Amir_0210 SM00382 ATPases associated with a variety of cellular activities Amir_0213 SM00917 LeuA allosteric (dimerisation) domain Amir_0218 SM00859 Semialdehyde dehydrogenase, NAD binding domain Amir_0220 SM00357 Cold shock protein domain Amir_0222 SM01060 Amir_0222 Amir_0235 SM00740 Amir_0235 Amir_0248 SM00849 Metallo-beta-lactamase superfamily Amir_0251 SM00480 DNA polymerase III beta subunit Amir_0253 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_0253 SM00419 helix_turn_helix, cAMP Regulatory protein Amir_0255 SM00478 endonuclease III Amir_0255 SM00525 Amir_0255 Amir_0267 SM00344 helix_turn_helix ASNC type Amir_0282 SM00943 Bifunctional DNA primase/polymerase, N-terminal Amir_0283 SM00487 DEAD-like helicases superfamily Amir_0283 SM00490 helicase superfamily c-terminal domain Amir_0291 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Amir_0291 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Amir_0291 SM00493 Amir_0291 Amir_0298 SM00382 ATPases associated with a variety of cellular activities Amir_0301 SM00894 Excalibur calcium-binding domain Amir_0302 SM00894 Excalibur calcium-binding domain Amir_0303 SM00318 Staphylococcal nuclease homologues Amir_0305 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_0312 SM00327 von Willebrand factor (vWF) type A domain Amir_0313 SM00382 ATPases associated with a variety of cellular activities Amir_0316 SM00905 Dihydroneopterin aldolase Amir_0333 SM00382 ATPases associated with a variety of cellular activities Amir_0335 SM00382 ATPases associated with a variety of cellular activities Amir_0335 SM01086 C-terminal, D2-small domain, of ClpB protein Amir_0343 SM00478 endonuclease III Amir_0343 SM00525 Amir_0343 Amir_0344 SM00947 Carbonic anhydrase Amir_0346 SM00354 helix_turn _helix lactose operon repressor Amir_0347 SM00354 helix_turn _helix lactose operon repressor Amir_0351 SM00382 ATPases associated with a variety of cellular activities Amir_0353 SM00382 ATPases associated with a variety of cellular activities Amir_0355 SM00267 diguanylate cyclase Amir_0359 SM00967 RNA 2'-O ribose methyltransferase substrate binding Amir_0360 SM00840 Amir_0360 Amir_0364 SM01058 CarD-like/TRCF domain Amir_0366 SM00382 ATPases associated with a variety of cellular activities Amir_0367 SM00530 Helix-turn-helix XRE-family like proteins Amir_0368 SM00822 Amir_0368 Amir_0374 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_0375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_0375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_0376 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_0376 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_0377 SM00327 von Willebrand factor (vWF) type A domain Amir_0378 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_0378 SM00387 Histidine kinase-like ATPases Amir_0378 SM00388 His Kinase A (phosphoacceptor) domain Amir_0379 SM00448 cheY-homologous receiver domain Amir_0379 SM00862 Transcriptional regulatory protein, C terminal Amir_0381 SM00900 Amir_0381 Amir_0385 SM00862 Transcriptional regulatory protein, C terminal Amir_0385 SM01043 Bacterial transcriptional activator domain Amir_0394 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Amir_0395 SM00822 Amir_0395 Amir_0399 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_0399 SM00895 Amir_0399 Amir_0404 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_0404 SM00866 Amir_0404 Amir_0411 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_0414 SM00530 Helix-turn-helix XRE-family like proteins Amir_0418 SM00822 Amir_0418 Amir_0422 SM00829 Enoylreductase Amir_0430 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_0430 SM00895 Amir_0430 Amir_0432 SM00382 ATPases associated with a variety of cellular activities Amir_0432 SM01073 Cell division protein 48 (CDC48) N-terminal domain Amir_0438 SM00852 Probable molybdopterin binding domain Amir_0440 SM00357 Cold shock protein domain Amir_0441 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_0452 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Amir_0453 SM00487 DEAD-like helicases superfamily Amir_0453 SM00490 helicase superfamily c-terminal domain Amir_0458 SM00387 Histidine kinase-like ATPases Amir_0459 SM00960 Roadblock/LC7 domain Amir_0465 SM00919 Malic enzyme, NAD binding domain Amir_0465 SM01274 Amir_0465 Amir_0467 SM00852 Probable molybdopterin binding domain Amir_0469 SM00257 Lysin motif Amir_0471 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_0472 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_0481 SM00357 Cold shock protein domain Amir_0489 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_0493 SM00382 ATPases associated with a variety of cellular activities Amir_0510 SM00382 ATPases associated with a variety of cellular activities Amir_0513 SM00421 helix_turn_helix, Lux Regulon Amir_0513 SM00448 cheY-homologous receiver domain Amir_0519 SM00382 ATPases associated with a variety of cellular activities Amir_0520 SM00382 ATPases associated with a variety of cellular activities Amir_0530 SM00421 helix_turn_helix, Lux Regulon Amir_0530 SM00448 cheY-homologous receiver domain Amir_0531 SM00387 Histidine kinase-like ATPases Amir_0533 SM00382 ATPases associated with a variety of cellular activities Amir_0534 SM00530 Helix-turn-helix XRE-family like proteins Amir_0539 SM00829 Enoylreductase Amir_0559 SM00421 helix_turn_helix, Lux Regulon Amir_0561 SM00320 WD40 repeats Amir_0563 SM00342 helix_turn_helix, arabinose operon control protein Amir_0563 SM01009 AlkA N-terminal domain Amir_0576 SM00028 Tetratricopeptide repeats Amir_0576 SM00862 Transcriptional regulatory protein, C terminal Amir_0576 SM01043 Bacterial transcriptional activator domain Amir_0594 SM00487 DEAD-like helicases superfamily Amir_0594 SM00490 helicase superfamily c-terminal domain Amir_0596 SM00155 Phospholipase D. Active site motifs. Amir_0601 SM00421 helix_turn_helix, Lux Regulon Amir_0601 SM00448 cheY-homologous receiver domain Amir_0602 SM00267 diguanylate cyclase Amir_0608 SM00855 Phosphoglycerate mutase family Amir_0612 SM00448 cheY-homologous receiver domain Amir_0612 SM00862 Transcriptional regulatory protein, C terminal Amir_0613 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_0613 SM00387 Histidine kinase-like ATPases Amir_0613 SM00388 His Kinase A (phosphoacceptor) domain Amir_0618 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_0618 SM01134 Amir_0618 Amir_0620 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Amir_0622 SM00852 Probable molybdopterin binding domain Amir_0625 SM00858 Amir_0625 Amir_0626 SM00834 Putative regulatory protein Amir_0629 SM00852 Probable molybdopterin binding domain Amir_0632 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_0635 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_0644 SM01208 Amir_0644 Amir_0645 SM00650 Ribosomal RNA adenine dimethylases Amir_0646 SM00382 ATPases associated with a variety of cellular activities Amir_0646 SM00930 Amir_0646 Amir_0650 SM00382 ATPases associated with a variety of cellular activities Amir_0656 SM01400 Amir_0656 Amir_0658 SM00267 diguanylate cyclase Amir_0665 SM00487 DEAD-like helicases superfamily Amir_0665 SM00490 helicase superfamily c-terminal domain Amir_0665 SM00982 Amir_0665 Amir_0665 SM01058 CarD-like/TRCF domain Amir_0668 SM00245 tail specific protease Amir_0670 SM00028 Tetratricopeptide repeats Amir_0671 SM01192 Amir_0671 Amir_0671 SM01193 Amir_0671 Amir_0679 SM00382 ATPases associated with a variety of cellular activities Amir_0680 SM00382 ATPases associated with a variety of cellular activities Amir_0682 SM00986 Uracil DNA glycosylase superfamily Amir_0682 SM00987 UreE urease accessory protein, C-terminal domain Amir_0700 SM00116 Domain in cystathionine beta-synthase and other proteins. Amir_0706 SM00344 helix_turn_helix ASNC type Amir_0717 SM00670 Large family of predicted nucleotide-binding domains Amir_0718 SM00116 Domain in cystathionine beta-synthase and other proteins. Amir_0718 SM01240 Amir_0718 Amir_0723 SM00020 Trypsin-like serine protease Amir_0735 SM00342 helix_turn_helix, arabinose operon control protein Amir_0735 SM01009 AlkA N-terminal domain Amir_0748 SM00382 ATPases associated with a variety of cellular activities Amir_0751 SM00382 ATPases associated with a variety of cellular activities Amir_0753 SM00448 cheY-homologous receiver domain Amir_0753 SM00862 Transcriptional regulatory protein, C terminal Amir_0754 SM00387 Histidine kinase-like ATPases Amir_0754 SM00388 His Kinase A (phosphoacceptor) domain Amir_0764 SM00382 ATPases associated with a variety of cellular activities Amir_0765 SM00382 ATPases associated with a variety of cellular activities Amir_0776 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Amir_0783 SM00829 Enoylreductase Amir_0797 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Amir_0800 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_0802 SM00116 Domain in cystathionine beta-synthase and other proteins. Amir_0802 SM00924 MgtE intracellular N domain Amir_0810 SM00382 ATPases associated with a variety of cellular activities Amir_0820 SM00481 DNA polymerase alpha chain like domain Amir_0824 SM00487 DEAD-like helicases superfamily Amir_0824 SM00490 helicase superfamily c-terminal domain Amir_0833 SM00450 Rhodanese Homology Domain Amir_0835 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Amir_0840 SM00862 Transcriptional regulatory protein, C terminal Amir_0844 SM00448 cheY-homologous receiver domain Amir_0844 SM00862 Transcriptional regulatory protein, C terminal Amir_0845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_0845 SM00387 Histidine kinase-like ATPases Amir_0845 SM00388 His Kinase A (phosphoacceptor) domain Amir_0854 SM00028 Tetratricopeptide repeats Amir_0860 SM00411 bacterial (prokaryotic) histone like domain Amir_0875 SM00226 Low molecular weight phosphatase family Amir_0876 SM00507 HNH nucleases Amir_0881 SM00855 Phosphoglycerate mutase family Amir_0895 SM00560 LamG-like jellyroll fold domain Amir_0896 SM00382 ATPases associated with a variety of cellular activities Amir_0899 SM00382 ATPases associated with a variety of cellular activities Amir_0902 SM00530 Helix-turn-helix XRE-family like proteins Amir_0909 SM01230 Amir_0909 Amir_0917 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_0925 SM01230 Amir_0925 Amir_0928 SM00341 Helicase and RNase D C-terminal Amir_0939 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Amir_0944 SM00937 Amir_0944 Amir_0945 SM00382 ATPases associated with a variety of cellular activities Amir_0948 SM00421 helix_turn_helix, Lux Regulon Amir_0948 SM00448 cheY-homologous receiver domain Amir_0951 SM00487 DEAD-like helicases superfamily Amir_0951 SM00490 helicase superfamily c-terminal domain Amir_0951 SM00847 Helicase associated domain (HA2) Add an annotation Amir_0957 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_0958 SM00487 DEAD-like helicases superfamily Amir_0966 SM00331 Sigma factor PP2C-like phosphatases Amir_0975 SM00354 helix_turn _helix lactose operon repressor Amir_0976 SM00028 Tetratricopeptide repeats Amir_0976 SM00530 Helix-turn-helix XRE-family like proteins Amir_0980 SM00530 Helix-turn-helix XRE-family like proteins Amir_0986 SM01007 Class II Aldolase and Adducin N-terminal domain Amir_0994 SM00155 Phospholipase D. Active site motifs. Amir_0995 SM00487 DEAD-like helicases superfamily Amir_0995 SM00491 Amir_0995 Amir_1009 SM00232 JAB/MPN domain Amir_1012 SM00849 Metallo-beta-lactamase superfamily Amir_1016 SM00849 Metallo-beta-lactamase superfamily Amir_1028 SM00833 Cobalamin synthesis protein cobW C-terminal domain Amir_1032 SM00829 Enoylreductase Amir_1035 SM00530 Helix-turn-helix XRE-family like proteins Amir_1042 SM00357 Cold shock protein domain Amir_1044 SM00776 Amir_1044 Amir_1047 SM00487 DEAD-like helicases superfamily Amir_1047 SM00490 helicase superfamily c-terminal domain Amir_1055 SM00382 ATPases associated with a variety of cellular activities Amir_1056 SM00479 Amir_1056 Amir_1058 SM00342 helix_turn_helix, arabinose operon control protein Amir_1059 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_1059 SM01134 Amir_1059 Amir_1068 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_1071 SM00028 Tetratricopeptide repeats Amir_1076 SM00342 helix_turn_helix, arabinose operon control protein Amir_1077 SM00606 Cellulose Binding Domain Type IV Amir_1078 SM00482 DNA polymerase A domain Amir_1088 SM00862 Transcriptional regulatory protein, C terminal Amir_1092 SM00880 Amir_1092 Amir_1092 SM01118 Amir_1092 Amir_1102 SM00530 Helix-turn-helix XRE-family like proteins Amir_1108 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_1119 SM00354 helix_turn _helix lactose operon repressor Amir_1124 SM00382 ATPases associated with a variety of cellular activities Amir_1127 SM00382 ATPases associated with a variety of cellular activities Amir_1130 SM00632 Amir_1130 Amir_1130 SM00642 Alpha-amylase domain Amir_1130 SM01065 Starch binding domain Amir_1131 SM00354 helix_turn _helix lactose operon repressor Amir_1134 SM00642 Alpha-amylase domain Amir_1138 SM00507 HNH nucleases Amir_1147 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Amir_1147 SM01232 Amir_1147 Amir_1154 SM00382 ATPases associated with a variety of cellular activities Amir_1154 SM00994 ClpX C4-type zinc finger Amir_1154 SM01086 C-terminal, D2-small domain, of ClpB protein Amir_1170 SM00642 Alpha-amylase domain Amir_1172 SM00562 Amir_1172 Amir_1173 SM00382 ATPases associated with a variety of cellular activities Amir_1176 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_1178 SM00028 Tetratricopeptide repeats Amir_1178 SM00421 helix_turn_helix, Lux Regulon Amir_1186 SM00316 Ribosomal protein S1-like RNA-binding domain Amir_1190 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Amir_1193 SM00487 DEAD-like helicases superfamily Amir_1193 SM00490 helicase superfamily c-terminal domain Amir_1199 SM00855 Phosphoglycerate mutase family Amir_1202 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Amir_1203 SM00849 Metallo-beta-lactamase superfamily Amir_1211 SM00244 prohibitin homologues Amir_1215 SM00460 Transglutaminase/protease-like homologues Amir_1216 SM00838 Elongation factor G C-terminus Amir_1220 SM00636 Amir_1220 Amir_1225 SM00829 Enoylreductase Amir_1233 SM00382 ATPases associated with a variety of cellular activities Amir_1240 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_1242 SM00271 DnaJ molecular chaperone homology domain Amir_1249 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Amir_1249 SM00322 K homology RNA-binding domain Amir_1251 SM00116 Domain in cystathionine beta-synthase and other proteins. Amir_1251 SM01091 Transporter associated domain Amir_1262 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_1268 SM00947 Carbonic anhydrase Amir_1270 SM00093 SERine Proteinase INhibitors Amir_1271 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Amir_1275 SM00400 zinc finger Amir_1275 SM00493 Amir_1275 Amir_1275 SM00766 DNA primase DnaG DnaB-binding Amir_1280 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_1280 SM00866 Amir_1280 Amir_1281 SM00530 Helix-turn-helix XRE-family like proteins Amir_1284 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_1284 SM00866 Amir_1284 Amir_1304 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Amir_1304 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Amir_1306 SM00052 Putative diguanylate phosphodiesterase Amir_1306 SM00091 PAS domain Amir_1306 SM00267 diguanylate cyclase Amir_1308 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_1319 SM00382 ATPases associated with a variety of cellular activities Amir_1320 SM00382 ATPases associated with a variety of cellular activities Amir_1322 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_1322 SM01260 Amir_1322 Amir_1324 SM00825 Beta-ketoacyl synthase Amir_1327 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_1340 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_1345 SM00530 Helix-turn-helix XRE-family like proteins Amir_1348 SM00014 Acid phosphatase homologues Amir_1369 SM00563 Phosphate acyltransferases Amir_1378 SM00465 GIY-YIG type nucleases (URI domain) Amir_1378 SM00479 Amir_1378 Amir_1392 SM00563 Phosphate acyltransferases Amir_1396 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_1396 SM00740 Amir_1396 Amir_1411 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_1411 SM00895 Amir_1411 Amir_1413 SM00382 ATPases associated with a variety of cellular activities Amir_1413 SM00487 DEAD-like helicases superfamily Amir_1413 SM00490 helicase superfamily c-terminal domain Amir_1419 SM00382 ATPases associated with a variety of cellular activities Amir_1444 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_1446 SM00387 Histidine kinase-like ATPases Amir_1446 SM00388 His Kinase A (phosphoacceptor) domain Amir_1447 SM00448 cheY-homologous receiver domain Amir_1447 SM00862 Transcriptional regulatory protein, C terminal Amir_1448 SM00382 ATPases associated with a variety of cellular activities Amir_1449 SM00062 Bacterial periplasmic substrate-binding proteins Amir_1460 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Amir_1465 SM00529 Helix-turn-helix diphteria tox regulatory element Amir_1465 SM00899 Amir_1465 Amir_1466 SM00450 Rhodanese Homology Domain Amir_1469 SM00881 CoA binding domain Amir_1470 SM00062 Bacterial periplasmic substrate-binding proteins Amir_1470 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Amir_1471 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_1471 SM00866 Amir_1471 Amir_1477 SM00382 ATPases associated with a variety of cellular activities Amir_1486 SM00346 helix_turn_helix isocitrate lyase regulation Amir_1487 SM01130 Amir_1487 Amir_1488 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Amir_1502 SM00487 DEAD-like helicases superfamily Amir_1504 SM00382 ATPases associated with a variety of cellular activities Amir_1524 SM00861 Transketolase, pyrimidine binding domain Amir_1526 SM00448 cheY-homologous receiver domain Amir_1526 SM00862 Transcriptional regulatory protein, C terminal Amir_1527 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_1527 SM00387 Histidine kinase-like ATPases Amir_1527 SM00388 His Kinase A (phosphoacceptor) domain Amir_1547 SM00422 helix_turn_helix, mercury resistance Amir_1548 SM00341 Helicase and RNase D C-terminal Amir_1548 SM00474 3'-5' exonuclease Amir_1549 SM00421 helix_turn_helix, Lux Regulon Amir_1549 SM00448 cheY-homologous receiver domain Amir_1568 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_1568 SM00895 Amir_1568 Amir_1583 SM00382 ATPases associated with a variety of cellular activities Amir_1588 SM00855 Phosphoglycerate mutase family Amir_1593 SM00014 Acid phosphatase homologues Amir_1595 SM00957 SecA DEAD-like domain Amir_1595 SM00958 SecA preprotein cross-linking domain Amir_1600 SM00327 von Willebrand factor (vWF) type A domain Amir_1602 SM00479 Amir_1602 Amir_1607 SM00822 Amir_1607 Amir_1609 SM00829 Enoylreductase Amir_1615 SM00563 Phosphate acyltransferases Amir_1616 SM00382 ATPases associated with a variety of cellular activities Amir_1617 SM00421 helix_turn_helix, Lux Regulon Amir_1617 SM00448 cheY-homologous receiver domain Amir_1665 SM00458 Ricin-type beta-trefoil Amir_1666 SM00530 Helix-turn-helix XRE-family like proteins Amir_1670 SM00382 ATPases associated with a variety of cellular activities Amir_1671 SM00382 ATPases associated with a variety of cellular activities Amir_1679 SM00382 ATPases associated with a variety of cellular activities Amir_1682 SM00382 ATPases associated with a variety of cellular activities Amir_1685 SM00331 Sigma factor PP2C-like phosphatases Amir_1685 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Amir_1690 SM00382 ATPases associated with a variety of cellular activities Amir_1691 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Amir_1693 SM00267 diguanylate cyclase Amir_1694 SM01323 Amir_1694 Amir_1698 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Amir_1698 SM00954 Region found in RelA / SpoT proteins Amir_1700 SM00849 Metallo-beta-lactamase superfamily Amir_1713 SM00878 Biotin carboxylase C-terminal domain Amir_1723 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_1723 SM00387 Histidine kinase-like ATPases Amir_1723 SM00388 His Kinase A (phosphoacceptor) domain Amir_1724 SM00448 cheY-homologous receiver domain Amir_1724 SM00862 Transcriptional regulatory protein, C terminal Amir_1729 SM00363 S4 RNA-binding domain Amir_1754 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_1755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_1755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_1758 SM00421 helix_turn_helix, Lux Regulon Amir_1762 SM00316 Ribosomal protein S1-like RNA-binding domain Amir_1762 SM00732 Likely ribonuclease with RNase H fold. Amir_1773 SM00382 ATPases associated with a variety of cellular activities Amir_1775 SM00062 Bacterial periplasmic substrate-binding proteins Amir_1789 SM00354 helix_turn _helix lactose operon repressor Amir_1791 SM00637 Amir_1791 Amir_1793 SM00320 WD40 repeats Amir_1793 SM00530 Helix-turn-helix XRE-family like proteins Amir_1802 SM00342 helix_turn_helix, arabinose operon control protein Amir_1802 SM00871 Bacterial transcription activator, effector binding domain Amir_1803 SM00829 Enoylreductase Amir_1805 SM00862 Transcriptional regulatory protein, C terminal Amir_1812 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_1817 SM00422 helix_turn_helix, mercury resistance Amir_1822 SM00060 Fibronectin type 3 domain Amir_1822 SM00637 Amir_1822 Amir_1824 SM00354 helix_turn _helix lactose operon repressor Amir_1825 SM00354 helix_turn _helix lactose operon repressor Amir_1826 SM01217 Amir_1826 Amir_1830 SM00060 Fibronectin type 3 domain Amir_1830 SM00637 Amir_1830 Amir_1831 SM00637 Amir_1831 Amir_1835 SM00530 Helix-turn-helix XRE-family like proteins Amir_1837 SM00530 Helix-turn-helix XRE-family like proteins Amir_1840 SM00098 Alkaline phosphatase homologues Amir_1842 SM00354 helix_turn _helix lactose operon repressor Amir_1843 SM00656 Amir_1843 Amir_1847 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Amir_1848 SM00656 Amir_1848 Amir_1848 SM00710 Parallel beta-helix repeats Amir_1850 SM00458 Ricin-type beta-trefoil Amir_1854 SM00382 ATPases associated with a variety of cellular activities Amir_1857 SM00813 Alpha-L-arabinofuranosidase C-terminus Amir_1859 SM00560 LamG-like jellyroll fold domain Amir_1860 SM00354 helix_turn _helix lactose operon repressor Amir_1862 SM01007 Class II Aldolase and Adducin N-terminal domain Amir_1865 SM00382 ATPases associated with a variety of cellular activities Amir_1868 SM00637 Amir_1868 Amir_1869 SM00710 Parallel beta-helix repeats Amir_1871 SM00354 helix_turn _helix lactose operon repressor Amir_1881 SM00421 helix_turn_helix, Lux Regulon Amir_1881 SM00448 cheY-homologous receiver domain Amir_1883 SM01400 Amir_1883 Amir_1885 SM00327 von Willebrand factor (vWF) type A domain Amir_1887 SM00382 ATPases associated with a variety of cellular activities Amir_1896 SM00530 Helix-turn-helix XRE-family like proteins Amir_1905 SM00829 Enoylreductase Amir_1907 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_1907 SM00387 Histidine kinase-like ATPases Amir_1910 SM00421 helix_turn_helix, Lux Regulon Amir_1910 SM00448 cheY-homologous receiver domain Amir_1911 SM00116 Domain in cystathionine beta-synthase and other proteins. Amir_1913 SM00881 CoA binding domain Amir_1926 SM00354 helix_turn _helix lactose operon repressor Amir_1930 SM00813 Alpha-L-arabinofuranosidase C-terminus Amir_1933 SM00448 cheY-homologous receiver domain Amir_1933 SM00862 Transcriptional regulatory protein, C terminal Amir_1937 SM00421 helix_turn_helix, Lux Regulon Amir_1937 SM00448 cheY-homologous receiver domain Amir_1940 SM00382 ATPases associated with a variety of cellular activities Amir_1944 SM00530 Helix-turn-helix XRE-family like proteins Amir_1948 SM00382 ATPases associated with a variety of cellular activities Amir_1955 SM00387 Histidine kinase-like ATPases Amir_1955 SM00388 His Kinase A (phosphoacceptor) domain Amir_1957 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Amir_1957 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_1966 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_1970 SM00421 helix_turn_helix, Lux Regulon Amir_1982 SM01217 Amir_1982 Amir_1983 SM00354 helix_turn _helix lactose operon repressor Amir_2007 SM00530 Helix-turn-helix XRE-family like proteins Amir_2010 SM00421 helix_turn_helix, Lux Regulon Amir_2010 SM00448 cheY-homologous receiver domain Amir_2028 SM00062 Bacterial periplasmic substrate-binding proteins Amir_2031 SM00382 ATPases associated with a variety of cellular activities Amir_2033 SM00530 Helix-turn-helix XRE-family like proteins Amir_2040 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Amir_2048 SM00060 Fibronectin type 3 domain Amir_2048 SM00637 Amir_2048 Amir_2051 SM00382 ATPases associated with a variety of cellular activities Amir_2057 SM00382 ATPases associated with a variety of cellular activities Amir_2066 SM00387 Histidine kinase-like ATPases Amir_2067 SM00960 Roadblock/LC7 domain Amir_2076 SM01230 Amir_2076 Amir_2080 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_2080 SM00895 Amir_2080 Amir_2085 SM00382 ATPases associated with a variety of cellular activities Amir_2089 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Amir_2107 SM00838 Elongation factor G C-terminus Amir_2107 SM00889 Elongation factor G, domain IV Amir_2127 SM00530 Helix-turn-helix XRE-family like proteins Amir_2133 SM00382 ATPases associated with a variety of cellular activities Amir_2138 SM01057 Eukaryotic-type carbonic anhydrase Amir_2147 SM00327 von Willebrand factor (vWF) type A domain Amir_2150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_2150 SM00387 Histidine kinase-like ATPases Amir_2150 SM00388 His Kinase A (phosphoacceptor) domain Amir_2151 SM00448 cheY-homologous receiver domain Amir_2151 SM00862 Transcriptional regulatory protein, C terminal Amir_2152 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_2152 SM01012 Amir_2152 Amir_2166 SM00637 Amir_2166 Amir_2167 SM00637 Amir_2167 Amir_2168 SM01217 Amir_2168 Amir_2169 SM00354 helix_turn _helix lactose operon repressor Amir_2176 SM00422 helix_turn_helix, mercury resistance Amir_2180 SM00822 Amir_2180 Amir_2185 SM00822 Amir_2185 Amir_2191 SM00637 Amir_2191 Amir_2193 SM00327 von Willebrand factor (vWF) type A domain Amir_2197 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_2197 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_2207 SM00448 cheY-homologous receiver domain Amir_2207 SM00862 Transcriptional regulatory protein, C terminal Amir_2208 SM00448 cheY-homologous receiver domain Amir_2209 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_2209 SM00387 Histidine kinase-like ATPases Amir_2209 SM00388 His Kinase A (phosphoacceptor) domain Amir_2211 SM01018 B12 binding domain Amir_2216 SM00822 Amir_2216 Amir_2225 SM00421 helix_turn_helix, Lux Regulon Amir_2225 SM00448 cheY-homologous receiver domain Amir_2231 SM00382 ATPases associated with a variety of cellular activities Amir_2232 SM00421 helix_turn_helix, Lux Regulon Amir_2232 SM00448 cheY-homologous receiver domain Amir_2234 SM00382 ATPases associated with a variety of cellular activities Amir_2245 SM00382 ATPases associated with a variety of cellular activities Amir_2245 SM00421 helix_turn_helix, Lux Regulon Amir_2246 SM00014 Acid phosphatase homologues Amir_2246 SM00046 Diacylglycerol kinase catalytic domain (presumed) Amir_2253 SM00046 Diacylglycerol kinase catalytic domain (presumed) Amir_2254 SM00487 DEAD-like helicases superfamily Amir_2254 SM00490 helicase superfamily c-terminal domain Amir_2254 SM01142 Amir_2254 Amir_2257 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Amir_2257 SM00475 5'-3' exonuclease Amir_2259 SM00344 helix_turn_helix ASNC type Amir_2262 SM00267 diguanylate cyclase Amir_2267 SM00487 DEAD-like helicases superfamily Amir_2267 SM00490 helicase superfamily c-terminal domain Amir_2268 SM00954 Region found in RelA / SpoT proteins Amir_2271 SM00867 YceI-like domain Amir_2272 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_2278 SM00028 Tetratricopeptide repeats Amir_2280 SM00387 Histidine kinase-like ATPases Amir_2280 SM00433 TopoisomeraseII Amir_2281 SM00305 Hint (Hedgehog/Intein) domain C-terminal region Amir_2281 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Amir_2281 SM00434 DNA Topoisomerase IV Amir_2287 SM00052 Putative diguanylate phosphodiesterase Amir_2287 SM00267 diguanylate cyclase Amir_2291 SM00382 ATPases associated with a variety of cellular activities Amir_2308 SM00704 CDGSH-type zinc finger. Function unknown. Amir_2309 SM01236 Amir_2309 Amir_2312 SM00387 Histidine kinase-like ATPases Amir_2312 SM00388 His Kinase A (phosphoacceptor) domain Amir_2317 SM00448 cheY-homologous receiver domain Amir_2319 SM00448 cheY-homologous receiver domain Amir_2320 SM00138 Methyltransferase, chemotaxis proteins Amir_2321 SM00448 cheY-homologous receiver domain Amir_2323 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_2323 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_2324 SM00260 Two component signalling adaptor domain Amir_2325 SM00073 Histidine Phosphotransfer domain Amir_2325 SM00260 Two component signalling adaptor domain Amir_2325 SM00387 Histidine kinase-like ATPases Amir_2325 SM01231 Amir_2325 Amir_2344 SM00382 ATPases associated with a variety of cellular activities Amir_2362 SM00091 PAS domain Amir_2362 SM00387 Histidine kinase-like ATPases Amir_2362 SM00448 cheY-homologous receiver domain Amir_2363 SM00448 cheY-homologous receiver domain Amir_2365 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_2366 SM00091 PAS domain Amir_2366 SM00388 His Kinase A (phosphoacceptor) domain Amir_2367 SM00091 PAS domain Amir_2367 SM00387 Histidine kinase-like ATPases Amir_2368 SM00448 cheY-homologous receiver domain Amir_2370 SM00091 PAS domain Amir_2370 SM00387 Histidine kinase-like ATPases Amir_2370 SM00388 His Kinase A (phosphoacceptor) domain Amir_2370 SM00448 cheY-homologous receiver domain Amir_2371 SM00448 cheY-homologous receiver domain Amir_2372 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_2372 SM00895 Amir_2372 Amir_2374 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. Amir_2376 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_2377 SM00530 Helix-turn-helix XRE-family like proteins Amir_2380 SM00387 Histidine kinase-like ATPases Amir_2380 SM00388 His Kinase A (phosphoacceptor) domain Amir_2383 SM00344 helix_turn_helix ASNC type Amir_2389 SM00530 Helix-turn-helix XRE-family like proteins Amir_2392 SM00387 Histidine kinase-like ATPases Amir_2393 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_2398 SM00363 S4 RNA-binding domain Amir_2403 SM00354 helix_turn _helix lactose operon repressor Amir_2408 SM00382 ATPases associated with a variety of cellular activities Amir_2409 SM00421 helix_turn_helix, Lux Regulon Amir_2409 SM00448 cheY-homologous receiver domain Amir_2430 SM00530 Helix-turn-helix XRE-family like proteins Amir_2435 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_2435 SM01134 Amir_2435 Amir_2439 SM00974 Amir_2439 Amir_2441 SM00530 Helix-turn-helix XRE-family like proteins Amir_2444 SM00829 Enoylreductase Amir_2454 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_2456 SM00382 ATPases associated with a variety of cellular activities Amir_2461 SM00829 Enoylreductase Amir_2464 SM00448 cheY-homologous receiver domain Amir_2464 SM00862 Transcriptional regulatory protein, C terminal Amir_2465 SM00387 Histidine kinase-like ATPases Amir_2465 SM00388 His Kinase A (phosphoacceptor) domain Amir_2467 SM00560 LamG-like jellyroll fold domain Amir_2467 SM00758 Amir_2467 Amir_2469 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_2469 SM00895 Amir_2469 Amir_2484 SM00327 von Willebrand factor (vWF) type A domain Amir_2487 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_2493 SM00822 Amir_2493 Amir_2493 SM00825 Beta-ketoacyl synthase Amir_2493 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_2494 SM00825 Beta-ketoacyl synthase Amir_2494 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_2498 SM00382 ATPases associated with a variety of cellular activities Amir_2500 SM00644 Amir_2500 Amir_2501 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. Amir_2511 SM00382 ATPases associated with a variety of cellular activities Amir_2515 SM00342 helix_turn_helix, arabinose operon control protein Amir_2517 SM01060 Amir_2517 Amir_2520 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Amir_2524 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_2528 SM00422 helix_turn_helix, mercury resistance Amir_2528 SM00871 Bacterial transcription activator, effector binding domain Amir_2531 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_2532 SM00327 von Willebrand factor (vWF) type A domain Amir_2538 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_2540 SM00487 DEAD-like helicases superfamily Amir_2540 SM00490 helicase superfamily c-terminal domain Amir_2542 SM00344 helix_turn_helix ASNC type Amir_2555 SM00052 Putative diguanylate phosphodiesterase Amir_2555 SM00267 diguanylate cyclase Amir_2556 SM00458 Ricin-type beta-trefoil Amir_2565 SM01119 Amir_2565 Amir_2575 SM00813 Alpha-L-arabinofuranosidase C-terminus Amir_2577 SM00354 helix_turn _helix lactose operon repressor Amir_2586 SM00633 Glycosyl hydrolase family 10 Amir_2586 SM00637 Amir_2586 Amir_2593 SM00506 Appr-1"-p processing enzyme Amir_2599 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_2607 SM01012 Amir_2607 Amir_2612 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_2616 SM00382 ATPases associated with a variety of cellular activities Amir_2619 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_2622 SM00903 Flavin reductase like domain Amir_2622 SM00904 Riboflavin kinase Amir_2628 SM00382 ATPases associated with a variety of cellular activities Amir_2631 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_2631 SM00387 Histidine kinase-like ATPases Amir_2631 SM00388 His Kinase A (phosphoacceptor) domain Amir_2632 SM00448 cheY-homologous receiver domain Amir_2632 SM00862 Transcriptional regulatory protein, C terminal Amir_2633 SM01091 Transporter associated domain Amir_2635 SM00829 Enoylreductase Amir_2637 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amir_2645 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_2645 SM00895 Amir_2645 Amir_2647 SM01120 Amir_2647 Amir_2652 SM01101 Amir_2652 Amir_2668 SM01209 Amir_2668 Amir_2676 SM00382 ATPases associated with a variety of cellular activities Amir_2678 SM00824 Thioesterase Amir_2681 SM00822 Amir_2681 Amir_2681 SM00823 Phosphopantetheine attachment site Amir_2681 SM00825 Beta-ketoacyl synthase Amir_2681 SM00826 Amir_2681 Amir_2681 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_2681 SM01294 Amir_2681 Amir_2682 SM00822 Amir_2682 Amir_2682 SM00823 Phosphopantetheine attachment site Amir_2682 SM00825 Beta-ketoacyl synthase Amir_2682 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_2682 SM01294 Amir_2682 Amir_2683 SM00822 Amir_2683 Amir_2683 SM00823 Phosphopantetheine attachment site Amir_2683 SM00825 Beta-ketoacyl synthase Amir_2683 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_2683 SM01294 Amir_2683 Amir_2684 SM00822 Amir_2684 Amir_2684 SM00823 Phosphopantetheine attachment site Amir_2684 SM00824 Thioesterase Amir_2684 SM00825 Beta-ketoacyl synthase Amir_2684 SM00826 Amir_2684 Amir_2684 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_2684 SM01294 Amir_2684 Amir_2695 SM00822 Amir_2695 Amir_2695 SM00823 Phosphopantetheine attachment site Amir_2695 SM00825 Beta-ketoacyl synthase Amir_2695 SM00826 Amir_2695 Amir_2695 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_2695 SM01294 Amir_2695 Amir_2696 SM00421 helix_turn_helix, Lux Regulon Amir_2697 SM00382 ATPases associated with a variety of cellular activities Amir_2699 SM00421 helix_turn_helix, Lux Regulon Amir_2699 SM00448 cheY-homologous receiver domain Amir_2700 SM00387 Histidine kinase-like ATPases Amir_2708 SM00382 ATPases associated with a variety of cellular activities Amir_2710 SM00849 Metallo-beta-lactamase superfamily Amir_2713 SM00028 Tetratricopeptide repeats Amir_2716 SM00421 helix_turn_helix, Lux Regulon Amir_2719 SM00823 Phosphopantetheine attachment site Amir_2720 SM00382 ATPases associated with a variety of cellular activities Amir_2731 SM00382 ATPases associated with a variety of cellular activities Amir_2733 SM00530 Helix-turn-helix XRE-family like proteins Amir_2736 SM00387 Histidine kinase-like ATPases Amir_2737 SM00421 helix_turn_helix, Lux Regulon Amir_2737 SM00448 cheY-homologous receiver domain Amir_2739 SM01192 Amir_2739 Amir_2739 SM01193 Amir_2739 Amir_2742 SM00382 ATPases associated with a variety of cellular activities Amir_2745 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_2745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_2750 SM00560 LamG-like jellyroll fold domain Amir_2750 SM00758 Amir_2750 Amir_2757 SM00421 helix_turn_helix, Lux Regulon Amir_2757 SM00448 cheY-homologous receiver domain Amir_2758 SM00387 Histidine kinase-like ATPases Amir_2759 SM00382 ATPases associated with a variety of cellular activities Amir_2764 SM00028 Tetratricopeptide repeats Amir_2772 SM00756 Amir_2772 Amir_2777 SM00382 ATPases associated with a variety of cellular activities Amir_2781 SM00637 Amir_2781 Amir_2784 SM00530 Helix-turn-helix XRE-family like proteins Amir_2793 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_2793 SM01012 Amir_2793 Amir_2804 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_2804 SM01012 Amir_2804 Amir_2805 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_2805 SM01012 Amir_2805 Amir_2806 SM01012 Amir_2806 Amir_2811 SM00421 helix_turn_helix, Lux Regulon Amir_2811 SM00448 cheY-homologous receiver domain Amir_2824 SM00382 ATPases associated with a variety of cellular activities Amir_2826 SM00823 Phosphopantetheine attachment site Amir_2830 SM00354 helix_turn _helix lactose operon repressor Amir_2841 SM00422 helix_turn_helix, mercury resistance Amir_2842 SM00421 helix_turn_helix, Lux Regulon Amir_2845 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_2845 SM00895 Amir_2845 Amir_2853 SM00382 ATPases associated with a variety of cellular activities Amir_2875 SM00382 ATPases associated with a variety of cellular activities Amir_2897 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_2897 SM00388 His Kinase A (phosphoacceptor) domain Amir_2898 SM00422 helix_turn_helix, mercury resistance Amir_2910 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_2910 SM00387 Histidine kinase-like ATPases Amir_2910 SM00388 His Kinase A (phosphoacceptor) domain Amir_2911 SM00331 Sigma factor PP2C-like phosphatases Amir_2912 SM00448 cheY-homologous receiver domain Amir_2923 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_2925 SM00862 Transcriptional regulatory protein, C terminal Amir_2925 SM01043 Bacterial transcriptional activator domain Amir_2930 SM00421 helix_turn_helix, Lux Regulon Amir_2933 SM00382 ATPases associated with a variety of cellular activities Amir_2936 SM00028 Tetratricopeptide repeats Amir_2936 SM00862 Transcriptional regulatory protein, C terminal Amir_2936 SM01043 Bacterial transcriptional activator domain Amir_2952 SM00421 helix_turn_helix, Lux Regulon Amir_2954 SM00862 Transcriptional regulatory protein, C terminal Amir_2954 SM01043 Bacterial transcriptional activator domain Amir_2956 SM00862 Transcriptional regulatory protein, C terminal Amir_2956 SM01043 Bacterial transcriptional activator domain Amir_2964 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Amir_2964 SM00292 breast cancer carboxy-terminal domain Amir_2964 SM00532 Ligase N family Amir_2980 SM00530 Helix-turn-helix XRE-family like proteins Amir_2987 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_2988 SM00354 helix_turn _helix lactose operon repressor Amir_2992 SM00530 Helix-turn-helix XRE-family like proteins Amir_2999 SM00530 Helix-turn-helix XRE-family like proteins Amir_3002 SM00479 Amir_3002 Amir_3003 SM00422 helix_turn_helix, mercury resistance Amir_3004 SM00421 helix_turn_helix, Lux Regulon Amir_3004 SM00448 cheY-homologous receiver domain Amir_3006 SM00382 ATPases associated with a variety of cellular activities Amir_3009 SM00642 Alpha-amylase domain Amir_3021 SM00773 Proposed nucleic acid binding domain Amir_3026 SM00382 ATPases associated with a variety of cellular activities Amir_3039 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_3039 SM00895 Amir_3039 Amir_3040 SM00354 helix_turn _helix lactose operon repressor Amir_3041 SM00382 ATPases associated with a variety of cellular activities Amir_3046 SM01007 Class II Aldolase and Adducin N-terminal domain Amir_3056 SM00710 Parallel beta-helix repeats Amir_3060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_3069 SM00382 ATPases associated with a variety of cellular activities Amir_3070 SM00382 ATPases associated with a variety of cellular activities Amir_3088 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_3089 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_3089 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_3092 SM00530 Helix-turn-helix XRE-family like proteins Amir_3096 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_3102 SM00996 S-adenosyl-L-homocysteine hydrolase Amir_3102 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Amir_3106 SM00458 Ricin-type beta-trefoil Amir_3108 SM00458 Ricin-type beta-trefoil Amir_3111 SM00344 helix_turn_helix ASNC type Amir_3112 SM00255 Toll - interleukin 1 - resistance Amir_3121 SM00331 Sigma factor PP2C-like phosphatases Amir_3134 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_3139 SM00822 Amir_3139 Amir_3141 SM01133 Amir_3141 Amir_3142 SM00829 Enoylreductase Amir_3145 SM00873 B3/4 domain Amir_3154 SM00458 Ricin-type beta-trefoil Amir_3160 SM00530 Helix-turn-helix XRE-family like proteins Amir_3171 SM00829 Enoylreductase Amir_3174 SM00382 ATPases associated with a variety of cellular activities Amir_3178 SM00421 helix_turn_helix, Lux Regulon Amir_3179 SM00822 Amir_3179 Amir_3179 SM00823 Phosphopantetheine attachment site Amir_3179 SM00825 Beta-ketoacyl synthase Amir_3179 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_3179 SM01294 Amir_3179 Amir_3180 SM00822 Amir_3180 Amir_3180 SM00823 Phosphopantetheine attachment site Amir_3180 SM00825 Beta-ketoacyl synthase Amir_3180 SM00826 Amir_3180 Amir_3180 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_3180 SM01294 Amir_3180 Amir_3190 SM00862 Transcriptional regulatory protein, C terminal Amir_3190 SM01043 Bacterial transcriptional activator domain Amir_3197 SM00822 Amir_3197 Amir_3197 SM00823 Phosphopantetheine attachment site Amir_3197 SM00825 Beta-ketoacyl synthase Amir_3197 SM00826 Amir_3197 Amir_3197 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_3197 SM00829 Enoylreductase Amir_3197 SM01294 Amir_3197 Amir_3198 SM00822 Amir_3198 Amir_3198 SM00823 Phosphopantetheine attachment site Amir_3198 SM00825 Beta-ketoacyl synthase Amir_3198 SM00826 Amir_3198 Amir_3198 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_3198 SM01294 Amir_3198 Amir_3200 SM00822 Amir_3200 Amir_3213 SM00606 Cellulose Binding Domain Type IV Amir_3214 SM00633 Glycosyl hydrolase family 10 Amir_3214 SM00637 Amir_3214 Amir_3215 SM00637 Amir_3215 Amir_3216 SM00060 Fibronectin type 3 domain Amir_3216 SM00637 Amir_3216 Amir_3219 SM00421 helix_turn_helix, Lux Regulon Amir_3219 SM00448 cheY-homologous receiver domain Amir_3222 SM00637 Amir_3222 Amir_3227 SM00530 Helix-turn-helix XRE-family like proteins Amir_3228 SM00387 Histidine kinase-like ATPases Amir_3228 SM00388 His Kinase A (phosphoacceptor) domain Amir_3240 SM00857 Resolvase, N terminal domain Amir_3244 SM00257 Lysin motif Amir_3244 SM00641 Glycosyl hydrolases family 25 Amir_3275 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. Amir_3292 SM00822 Amir_3292 Amir_3292 SM00823 Phosphopantetheine attachment site Amir_3292 SM00825 Beta-ketoacyl synthase Amir_3292 SM00826 Amir_3292 Amir_3292 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_3292 SM00829 Enoylreductase Amir_3292 SM01294 Amir_3292 Amir_3293 SM00822 Amir_3293 Amir_3293 SM00823 Phosphopantetheine attachment site Amir_3293 SM00825 Beta-ketoacyl synthase Amir_3293 SM00826 Amir_3293 Amir_3293 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_3293 SM01294 Amir_3293 Amir_3294 SM00822 Amir_3294 Amir_3294 SM00823 Phosphopantetheine attachment site Amir_3294 SM00825 Beta-ketoacyl synthase Amir_3294 SM00826 Amir_3294 Amir_3294 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_3294 SM00829 Enoylreductase Amir_3294 SM01294 Amir_3294 Amir_3297 SM00421 helix_turn_helix, Lux Regulon Amir_3299 SM00530 Helix-turn-helix XRE-family like proteins Amir_3301 SM00637 Amir_3301 Amir_3303 SM00637 Amir_3303 Amir_3304 SM00354 helix_turn _helix lactose operon repressor Amir_3308 SM00862 Transcriptional regulatory protein, C terminal Amir_3308 SM01043 Bacterial transcriptional activator domain Amir_3311 SM00822 Amir_3311 Amir_3314 SM00421 helix_turn_helix, Lux Regulon Amir_3314 SM00448 cheY-homologous receiver domain Amir_3326 SM00342 helix_turn_helix, arabinose operon control protein Amir_3331 SM00342 helix_turn_helix, arabinose operon control protein Amir_3338 SM00354 helix_turn _helix lactose operon repressor Amir_3353 SM00849 Metallo-beta-lactamase superfamily Amir_3356 SM00387 Histidine kinase-like ATPases Amir_3359 SM00829 Enoylreductase Amir_3366 SM00342 helix_turn_helix, arabinose operon control protein Amir_3378 SM00060 Fibronectin type 3 domain Amir_3382 SM00354 helix_turn _helix lactose operon repressor Amir_3399 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_3407 SM00530 Helix-turn-helix XRE-family like proteins Amir_3414 SM00052 Putative diguanylate phosphodiesterase Amir_3414 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Amir_3414 SM00091 PAS domain Amir_3414 SM00267 diguanylate cyclase Amir_3417 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Amir_3421 SM00244 prohibitin homologues Amir_3423 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_3425 SM00226 Low molecular weight phosphatase family Amir_3428 SM01012 Amir_3428 Amir_3437 SM00822 Amir_3437 Amir_3439 SM00530 Helix-turn-helix XRE-family like proteins Amir_3440 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_3442 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_3442 SM01134 Amir_3442 Amir_3445 SM00479 Amir_3445 Amir_3448 SM00342 helix_turn_helix, arabinose operon control protein Amir_3463 SM00382 ATPases associated with a variety of cellular activities Amir_3470 SM00354 helix_turn _helix lactose operon repressor Amir_3477 SM00530 Helix-turn-helix XRE-family like proteins Amir_3490 SM00829 Enoylreductase Amir_3495 SM00637 Amir_3495 Amir_3496 SM00422 helix_turn_helix, mercury resistance Amir_3497 SM00422 helix_turn_helix, mercury resistance Amir_3502 SM00382 ATPases associated with a variety of cellular activities Amir_3508 SM00062 Bacterial periplasmic substrate-binding proteins Amir_3508 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Amir_3509 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_3510 SM00331 Sigma factor PP2C-like phosphatases Amir_3510 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Amir_3511 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_3517 SM00342 helix_turn_helix, arabinose operon control protein Amir_3518 SM00382 ATPases associated with a variety of cellular activities Amir_3518 SM00487 DEAD-like helicases superfamily Amir_3518 SM00490 helicase superfamily c-terminal domain Amir_3518 SM00847 Helicase associated domain (HA2) Add an annotation Amir_3521 SM00855 Phosphoglycerate mutase family Amir_3533 SM00421 helix_turn_helix, Lux Regulon Amir_3534 SM00346 helix_turn_helix isocitrate lyase regulation Amir_3536 SM00637 Amir_3536 Amir_3537 SM00458 Ricin-type beta-trefoil Amir_3538 SM00062 Bacterial periplasmic substrate-binding proteins Amir_3541 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Amir_3541 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Amir_3550 SM00641 Glycosyl hydrolases family 25 Amir_3571 SM00028 Tetratricopeptide repeats Amir_3571 SM00862 Transcriptional regulatory protein, C terminal Amir_3571 SM01043 Bacterial transcriptional activator domain Amir_3573 SM00421 helix_turn_helix, Lux Regulon Amir_3574 SM00421 helix_turn_helix, Lux Regulon Amir_3577 SM00823 Phosphopantetheine attachment site Amir_3578 SM00823 Phosphopantetheine attachment site Amir_3579 SM00923 MbtH-like protein Amir_3592 SM00382 ATPases associated with a variety of cellular activities Amir_3594 SM00422 helix_turn_helix, mercury resistance Amir_3601 SM00923 MbtH-like protein Amir_3602 SM00823 Phosphopantetheine attachment site Amir_3602 SM00824 Thioesterase Amir_3603 SM00382 ATPases associated with a variety of cellular activities Amir_3606 SM00331 Sigma factor PP2C-like phosphatases Amir_3612 SM00382 ATPases associated with a variety of cellular activities Amir_3646 SM00530 Helix-turn-helix XRE-family like proteins Amir_3648 SM00530 Helix-turn-helix XRE-family like proteins Amir_3664 SM00829 Enoylreductase Amir_3666 SM00248 ankyrin repeats Amir_3667 SM00382 ATPases associated with a variety of cellular activities Amir_3672 SM00923 MbtH-like protein Amir_3675 SM00823 Phosphopantetheine attachment site Amir_3680 SM00823 Phosphopantetheine attachment site Amir_3681 SM00823 Phosphopantetheine attachment site Amir_3682 SM00822 Amir_3682 Amir_3682 SM00823 Phosphopantetheine attachment site Amir_3682 SM00825 Beta-ketoacyl synthase Amir_3682 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_3684 SM00823 Phosphopantetheine attachment site Amir_3695 SM00382 ATPases associated with a variety of cellular activities Amir_3696 SM00421 helix_turn_helix, Lux Regulon Amir_3696 SM00448 cheY-homologous receiver domain Amir_3705 SM00387 Histidine kinase-like ATPases Amir_3706 SM00448 cheY-homologous receiver domain Amir_3708 SM00642 Alpha-amylase domain Amir_3710 SM00382 ATPases associated with a variety of cellular activities Amir_3719 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_3719 SM00419 helix_turn_helix, cAMP Regulatory protein Amir_3727 SM00382 ATPases associated with a variety of cellular activities Amir_3729 SM00858 Amir_3729 Amir_3731 SM01007 Class II Aldolase and Adducin N-terminal domain Amir_3732 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_3732 SM01134 Amir_3732 Amir_3733 SM00943 Bifunctional DNA primase/polymerase, N-terminal Amir_3736 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_3736 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Amir_3736 SM00091 PAS domain Amir_3736 SM00331 Sigma factor PP2C-like phosphatases Amir_3737 SM00028 Tetratricopeptide repeats Amir_3739 SM00331 Sigma factor PP2C-like phosphatases Amir_3739 SM00448 cheY-homologous receiver domain Amir_3740 SM00387 Histidine kinase-like ATPases Amir_3740 SM00388 His Kinase A (phosphoacceptor) domain Amir_3741 SM00331 Sigma factor PP2C-like phosphatases Amir_3742 SM00387 Histidine kinase-like ATPases Amir_3748 SM00342 helix_turn_helix, arabinose operon control protein Amir_3754 SM00382 ATPases associated with a variety of cellular activities Amir_3756 SM00382 ATPases associated with a variety of cellular activities Amir_3763 SM00422 helix_turn_helix, mercury resistance Amir_3766 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_3767 SM00829 Enoylreductase Amir_3768 SM00849 Metallo-beta-lactamase superfamily Amir_3769 SM00458 Ricin-type beta-trefoil Amir_3794 SM00788 Adenylosuccinate synthetase Amir_3796 SM00458 Ricin-type beta-trefoil Amir_3800 SM00861 Transketolase, pyrimidine binding domain Amir_3806 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_3807 SM00960 Roadblock/LC7 domain Amir_3842 SM00054 EF-hand, calcium binding motif Amir_3843 SM00984 UDP binding domain Amir_3845 SM00829 Enoylreductase Amir_3852 SM00331 Sigma factor PP2C-like phosphatases Amir_3859 SM00862 Transcriptional regulatory protein, C terminal Amir_3859 SM01043 Bacterial transcriptional activator domain Amir_3871 SM00448 cheY-homologous receiver domain Amir_3871 SM00862 Transcriptional regulatory protein, C terminal Amir_3882 SM00020 Trypsin-like serine protease Amir_3891 SM00823 Phosphopantetheine attachment site Amir_3891 SM00824 Thioesterase Amir_3892 SM00822 Amir_3892 Amir_3892 SM00823 Phosphopantetheine attachment site Amir_3892 SM00825 Beta-ketoacyl synthase Amir_3903 SM00829 Enoylreductase Amir_3904 SM00530 Helix-turn-helix XRE-family like proteins Amir_3914 SM00382 ATPases associated with a variety of cellular activities Amir_3923 SM01236 Amir_3923 Amir_3927 SM00458 Ricin-type beta-trefoil Amir_3941 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_3942 SM00530 Helix-turn-helix XRE-family like proteins Amir_3944 SM00458 Ricin-type beta-trefoil Amir_3947 SM00421 helix_turn_helix, Lux Regulon Amir_3954 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_3954 SM00091 PAS domain Amir_3954 SM00331 Sigma factor PP2C-like phosphatases Amir_3954 SM00387 Histidine kinase-like ATPases Amir_3954 SM00388 His Kinase A (phosphoacceptor) domain Amir_3954 SM00448 cheY-homologous receiver domain Amir_3957 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_3957 SM00419 helix_turn_helix, cAMP Regulatory protein Amir_3958 SM00656 Amir_3958 Amir_3959 SM00637 Amir_3959 Amir_3963 SM00530 Helix-turn-helix XRE-family like proteins Amir_3964 SM00829 Enoylreductase Amir_3971 SM00564 beta-propeller repeat Amir_3976 SM00822 Amir_3976 Amir_3981 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_3984 SM00567 E-Z type HEAT repeats Amir_3990 SM00422 helix_turn_helix, mercury resistance Amir_4000 SM00387 Histidine kinase-like ATPases Amir_4001 SM00421 helix_turn_helix, Lux Regulon Amir_4001 SM00448 cheY-homologous receiver domain Amir_4003 SM00824 Thioesterase Amir_4014 SM00862 Transcriptional regulatory protein, C terminal Amir_4019 SM00822 Amir_4019 Amir_4019 SM00823 Phosphopantetheine attachment site Amir_4019 SM00825 Beta-ketoacyl synthase Amir_4019 SM00826 Amir_4019 Amir_4019 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4019 SM00829 Enoylreductase Amir_4019 SM01294 Amir_4019 Amir_4028 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_4031 SM00458 Ricin-type beta-trefoil Amir_4038 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_4038 SM00387 Histidine kinase-like ATPases Amir_4038 SM00388 His Kinase A (phosphoacceptor) domain Amir_4042 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Amir_4044 SM00237 Domains in Na-Ca exchangers and integrin-beta4 Amir_4045 SM00382 ATPases associated with a variety of cellular activities Amir_4046 SM00382 ATPases associated with a variety of cellular activities Amir_4049 SM00382 ATPases associated with a variety of cellular activities Amir_4051 SM00421 helix_turn_helix, Lux Regulon Amir_4051 SM00448 cheY-homologous receiver domain Amir_4058 SM00849 Metallo-beta-lactamase superfamily Amir_4068 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_4068 SM00387 Histidine kinase-like ATPases Amir_4068 SM00388 His Kinase A (phosphoacceptor) domain Amir_4069 SM00448 cheY-homologous receiver domain Amir_4069 SM00862 Transcriptional regulatory protein, C terminal Amir_4071 SM00382 ATPases associated with a variety of cellular activities Amir_4081 SM00903 Flavin reductase like domain Amir_4083 SM00822 Amir_4083 Amir_4083 SM00825 Beta-ketoacyl synthase Amir_4083 SM00826 Amir_4083 Amir_4083 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4104 SM00342 helix_turn_helix, arabinose operon control protein Amir_4107 SM00829 Enoylreductase Amir_4109 SM00903 Flavin reductase like domain Amir_4110 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4119 SM00342 helix_turn_helix, arabinose operon control protein Amir_4124 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amir_4127 SM00487 DEAD-like helicases superfamily Amir_4127 SM00490 helicase superfamily c-terminal domain Amir_4128 SM00487 DEAD-like helicases superfamily Amir_4128 SM00490 helicase superfamily c-terminal domain Amir_4130 SM00354 helix_turn _helix lactose operon repressor Amir_4132 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Amir_4134 SM00637 Amir_4134 Amir_4137 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_4137 SM00387 Histidine kinase-like ATPases Amir_4137 SM00388 His Kinase A (phosphoacceptor) domain Amir_4138 SM00448 cheY-homologous receiver domain Amir_4138 SM00862 Transcriptional regulatory protein, C terminal Amir_4143 SM00327 von Willebrand factor (vWF) type A domain Amir_4149 SM00458 Ricin-type beta-trefoil Amir_4150 SM00458 Ricin-type beta-trefoil Amir_4151 SM00458 Ricin-type beta-trefoil Amir_4152 SM00637 Amir_4152 Amir_4164 SM00346 helix_turn_helix isocitrate lyase regulation Amir_4172 SM00346 helix_turn_helix isocitrate lyase regulation Amir_4174 SM00637 Amir_4174 Amir_4177 SM00458 Ricin-type beta-trefoil Amir_4178 SM00829 Enoylreductase Amir_4179 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_4182 SM00028 Tetratricopeptide repeats Amir_4182 SM00382 ATPases associated with a variety of cellular activities Amir_4183 SM00028 Tetratricopeptide repeats Amir_4184 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_4184 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_4188 SM00530 Helix-turn-helix XRE-family like proteins Amir_4190 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_4191 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_4191 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_4198 SM00458 Ricin-type beta-trefoil Amir_4199 SM00458 Ricin-type beta-trefoil Amir_4199 SM00656 Amir_4199 Amir_4199 SM00710 Parallel beta-helix repeats Amir_4212 SM00450 Rhodanese Homology Domain Amir_4227 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_4229 SM00422 helix_turn_helix, mercury resistance Amir_4236 SM00487 DEAD-like helicases superfamily Amir_4236 SM00490 helicase superfamily c-terminal domain Amir_4238 SM00878 Biotin carboxylase C-terminal domain Amir_4244 SM00530 Helix-turn-helix XRE-family like proteins Amir_4250 SM00382 ATPases associated with a variety of cellular activities Amir_4253 SM01266 Amir_4253 Amir_4260 SM00421 helix_turn_helix, Lux Regulon Amir_4260 SM00448 cheY-homologous receiver domain Amir_4273 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_4275 SM00421 helix_turn_helix, Lux Regulon Amir_4283 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_4286 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_4293 SM00382 ATPases associated with a variety of cellular activities Amir_4299 SM01012 Amir_4299 Amir_4301 SM00421 helix_turn_helix, Lux Regulon Amir_4306 SM00450 Rhodanese Homology Domain Amir_4310 SM00903 Flavin reductase like domain Amir_4316 SM00342 helix_turn_helix, arabinose operon control protein Amir_4317 SM00342 helix_turn_helix, arabinose operon control protein Amir_4323 SM00382 ATPases associated with a variety of cellular activities Amir_4329 SM00530 Helix-turn-helix XRE-family like proteins Amir_4331 SM00458 Ricin-type beta-trefoil Amir_4332 SM00448 cheY-homologous receiver domain Amir_4335 SM00344 helix_turn_helix ASNC type Amir_4346 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_4347 SM00382 ATPases associated with a variety of cellular activities Amir_4348 SM00344 helix_turn_helix ASNC type Amir_4351 SM00448 cheY-homologous receiver domain Amir_4351 SM00862 Transcriptional regulatory protein, C terminal Amir_4352 SM00387 Histidine kinase-like ATPases Amir_4352 SM00388 His Kinase A (phosphoacceptor) domain Amir_4356 SM00822 Amir_4356 Amir_4356 SM00823 Phosphopantetheine attachment site Amir_4356 SM00825 Beta-ketoacyl synthase Amir_4356 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4356 SM01294 Amir_4356 Amir_4357 SM00825 Beta-ketoacyl synthase Amir_4357 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4359 SM00822 Amir_4359 Amir_4359 SM00823 Phosphopantetheine attachment site Amir_4359 SM00825 Beta-ketoacyl synthase Amir_4359 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4359 SM01294 Amir_4359 Amir_4376 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Amir_4378 SM00422 helix_turn_helix, mercury resistance Amir_4390 SM00560 LamG-like jellyroll fold domain Amir_4393 SM00342 helix_turn_helix, arabinose operon control protein Amir_4398 SM00822 Amir_4398 Amir_4400 SM00422 helix_turn_helix, mercury resistance Amir_4402 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_4402 SM00895 Amir_4402 Amir_4405 SM00342 helix_turn_helix, arabinose operon control protein Amir_4416 SM00833 Cobalamin synthesis protein cobW C-terminal domain Amir_4417 SM01060 Amir_4417 Amir_4421 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_4422 SM00342 helix_turn_helix, arabinose operon control protein Amir_4423 SM00829 Enoylreductase Amir_4424 SM00342 helix_turn_helix, arabinose operon control protein Amir_4425 SM00829 Enoylreductase Amir_4426 SM00331 Sigma factor PP2C-like phosphatases Amir_4426 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Amir_4430 SM00886 Stress responsive A/B Barrel Domain Amir_4431 SM00829 Enoylreductase Amir_4433 SM00421 helix_turn_helix, Lux Regulon Amir_4433 SM00448 cheY-homologous receiver domain Amir_4438 SM00382 ATPases associated with a variety of cellular activities Amir_4440 SM00822 Amir_4440 Amir_4440 SM00823 Phosphopantetheine attachment site Amir_4440 SM00825 Beta-ketoacyl synthase Amir_4440 SM00826 Amir_4440 Amir_4440 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4441 SM00822 Amir_4441 Amir_4441 SM00823 Phosphopantetheine attachment site Amir_4441 SM00825 Beta-ketoacyl synthase Amir_4441 SM00826 Amir_4441 Amir_4441 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4441 SM01294 Amir_4441 Amir_4442 SM00822 Amir_4442 Amir_4442 SM00823 Phosphopantetheine attachment site Amir_4442 SM00825 Beta-ketoacyl synthase Amir_4442 SM00826 Amir_4442 Amir_4442 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4442 SM01294 Amir_4442 Amir_4443 SM00822 Amir_4443 Amir_4443 SM00823 Phosphopantetheine attachment site Amir_4443 SM00825 Beta-ketoacyl synthase Amir_4443 SM00826 Amir_4443 Amir_4443 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4443 SM01294 Amir_4443 Amir_4448 SM00903 Flavin reductase like domain Amir_4451 SM00862 Transcriptional regulatory protein, C terminal Amir_4451 SM01043 Bacterial transcriptional activator domain Amir_4452 SM00421 helix_turn_helix, Lux Regulon Amir_4455 SM00342 helix_turn_helix, arabinose operon control protein Amir_4458 SM00530 Helix-turn-helix XRE-family like proteins Amir_4477 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_4479 SM00829 Enoylreductase Amir_4486 SM00823 Phosphopantetheine attachment site Amir_4495 SM00823 Phosphopantetheine attachment site Amir_4498 SM00823 Phosphopantetheine attachment site Amir_4502 SM00923 MbtH-like protein Amir_4503 SM00823 Phosphopantetheine attachment site Amir_4506 SM00823 Phosphopantetheine attachment site Amir_4511 SM00421 helix_turn_helix, Lux Regulon Amir_4511 SM00448 cheY-homologous receiver domain Amir_4513 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_4513 SM00387 Histidine kinase-like ATPases Amir_4513 SM00388 His Kinase A (phosphoacceptor) domain Amir_4514 SM00448 cheY-homologous receiver domain Amir_4514 SM00862 Transcriptional regulatory protein, C terminal Amir_4516 SM00637 Amir_4516 Amir_4531 SM00091 PAS domain Amir_4531 SM00421 helix_turn_helix, Lux Regulon Amir_4549 SM00020 Trypsin-like serine protease Amir_4554 SM00530 Helix-turn-helix XRE-family like proteins Amir_4570 SM00530 Helix-turn-helix XRE-family like proteins Amir_4588 SM00823 Phosphopantetheine attachment site Amir_4589 SM00823 Phosphopantetheine attachment site Amir_4593 SM00923 MbtH-like protein Amir_4597 SM00862 Transcriptional regulatory protein, C terminal Amir_4597 SM01043 Bacterial transcriptional activator domain Amir_4600 SM00923 MbtH-like protein Amir_4604 SM00822 Amir_4604 Amir_4604 SM00823 Phosphopantetheine attachment site Amir_4604 SM00824 Thioesterase Amir_4604 SM00825 Beta-ketoacyl synthase Amir_4604 SM00826 Amir_4604 Amir_4604 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4604 SM00829 Enoylreductase Amir_4608 SM00354 helix_turn _helix lactose operon repressor Amir_4613 SM01149 Amir_4613 Amir_4621 SM00458 Ricin-type beta-trefoil Amir_4623 SM00422 helix_turn_helix, mercury resistance Amir_4623 SM00871 Bacterial transcription activator, effector binding domain Amir_4624 SM00422 helix_turn_helix, mercury resistance Amir_4624 SM00567 E-Z type HEAT repeats Amir_4631 SM00530 Helix-turn-helix XRE-family like proteins Amir_4634 SM00560 LamG-like jellyroll fold domain Amir_4634 SM00776 Amir_4634 Amir_4634 SM01038 Beta galactosidase small chain Amir_4636 SM00421 helix_turn_helix, Lux Regulon Amir_4637 SM00829 Enoylreductase Amir_4638 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_4646 SM00829 Enoylreductase Amir_4648 SM01209 Amir_4648 Amir_4654 SM00998 Adenylosuccinate lyase C-terminus Amir_4679 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_4682 SM00637 Amir_4682 Amir_4688 SM00387 Histidine kinase-like ATPases Amir_4689 SM00421 helix_turn_helix, Lux Regulon Amir_4689 SM00448 cheY-homologous receiver domain Amir_4694 SM00862 Transcriptional regulatory protein, C terminal Amir_4694 SM01043 Bacterial transcriptional activator domain Amir_4698 SM00822 Amir_4698 Amir_4698 SM00823 Phosphopantetheine attachment site Amir_4698 SM00825 Beta-ketoacyl synthase Amir_4698 SM00826 Amir_4698 Amir_4698 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4698 SM01294 Amir_4698 Amir_4699 SM00822 Amir_4699 Amir_4699 SM00823 Phosphopantetheine attachment site Amir_4699 SM00825 Beta-ketoacyl synthase Amir_4699 SM00826 Amir_4699 Amir_4699 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4699 SM01294 Amir_4699 Amir_4700 SM00903 Flavin reductase like domain Amir_4713 SM01011 Aminopeptidase P, N-terminal domain Amir_4715 SM00382 ATPases associated with a variety of cellular activities Amir_4716 SM00382 ATPases associated with a variety of cellular activities Amir_4720 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_4720 SM00895 Amir_4720 Amir_4723 SM01130 Amir_4723 Amir_4728 SM01133 Amir_4728 Amir_4729 SM00354 helix_turn _helix lactose operon repressor Amir_4730 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Amir_4732 SM00633 Glycosyl hydrolase family 10 Amir_4732 SM00637 Amir_4732 Amir_4743 SM00382 ATPases associated with a variety of cellular activities Amir_4749 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Amir_4749 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Amir_4755 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_4758 SM00631 Amir_4758 Amir_4760 SM00054 EF-hand, calcium binding motif Amir_4770 SM00382 ATPases associated with a variety of cellular activities Amir_4773 SM00833 Cobalamin synthesis protein cobW C-terminal domain Amir_4783 SM00382 ATPases associated with a variety of cellular activities Amir_4788 SM00849 Metallo-beta-lactamase superfamily Amir_4789 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Amir_4792 SM00822 Amir_4792 Amir_4800 SM00862 Transcriptional regulatory protein, C terminal Amir_4800 SM01043 Bacterial transcriptional activator domain Amir_4815 SM00960 Roadblock/LC7 domain Amir_4816 SM00387 Histidine kinase-like ATPases Amir_4828 SM00458 Ricin-type beta-trefoil Amir_4848 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_4848 SM01260 Amir_4848 Amir_4852 SM00822 Amir_4852 Amir_4853 SM00822 Amir_4853 Amir_4853 SM00823 Phosphopantetheine attachment site Amir_4853 SM00825 Beta-ketoacyl synthase Amir_4853 SM00826 Amir_4853 Amir_4853 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4853 SM01294 Amir_4853 Amir_4857 SM00825 Beta-ketoacyl synthase Amir_4862 SM00382 ATPases associated with a variety of cellular activities Amir_4868 SM00530 Helix-turn-helix XRE-family like proteins Amir_4869 SM00306 Hint (Hedgehog/Intein) domain N-terminal region Amir_4870 SM00560 LamG-like jellyroll fold domain Amir_4872 SM01217 Amir_4872 Amir_4877 SM00382 ATPases associated with a variety of cellular activities Amir_4879 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_4884 SM00346 helix_turn_helix isocitrate lyase regulation Amir_4886 SM00382 ATPases associated with a variety of cellular activities Amir_4888 SM00062 Bacterial periplasmic substrate-binding proteins Amir_4892 SM00612 Amir_4892 Amir_4894 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_4897 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_4901 SM00421 helix_turn_helix, Lux Regulon Amir_4903 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_4903 SM00895 Amir_4903 Amir_4904 SM00382 ATPases associated with a variety of cellular activities Amir_4911 SM00822 Amir_4911 Amir_4911 SM00823 Phosphopantetheine attachment site Amir_4911 SM00825 Beta-ketoacyl synthase Amir_4911 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Amir_4912 SM00823 Phosphopantetheine attachment site Amir_4921 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_4921 SM00331 Sigma factor PP2C-like phosphatases Amir_4930 SM00530 Helix-turn-helix XRE-family like proteins Amir_4934 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_4934 SM00387 Histidine kinase-like ATPases Amir_4934 SM00388 His Kinase A (phosphoacceptor) domain Amir_4935 SM00448 cheY-homologous receiver domain Amir_4935 SM00862 Transcriptional regulatory protein, C terminal Amir_4964 SM00458 Ricin-type beta-trefoil Amir_4964 SM00656 Amir_4964 Amir_4964 SM00710 Parallel beta-helix repeats Amir_4966 SM00458 Ricin-type beta-trefoil Amir_4976 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_4979 SM01091 Transporter associated domain Amir_4985 SM00028 Tetratricopeptide repeats Amir_4987 SM00530 Helix-turn-helix XRE-family like proteins Amir_4995 SM00421 helix_turn_helix, Lux Regulon Amir_4995 SM00448 cheY-homologous receiver domain Amir_5002 SM00861 Transketolase, pyrimidine binding domain Amir_5004 SM00344 helix_turn_helix ASNC type Amir_5006 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_5006 SM00387 Histidine kinase-like ATPases Amir_5006 SM00388 His Kinase A (phosphoacceptor) domain Amir_5007 SM00448 cheY-homologous receiver domain Amir_5007 SM00862 Transcriptional regulatory protein, C terminal Amir_5012 SM00267 diguanylate cyclase Amir_5014 SM00829 Enoylreductase Amir_5016 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_5017 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_5020 SM00861 Transketolase, pyrimidine binding domain Amir_5027 SM00829 Enoylreductase Amir_5032 SM00563 Phosphate acyltransferases Amir_5033 SM00331 Sigma factor PP2C-like phosphatases Amir_5033 SM00448 cheY-homologous receiver domain Amir_5034 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_5034 SM00387 Histidine kinase-like ATPases Amir_5034 SM00388 His Kinase A (phosphoacceptor) domain Amir_5035 SM00448 cheY-homologous receiver domain Amir_5038 SM00530 Helix-turn-helix XRE-family like proteins Amir_5048 SM00822 Amir_5048 Amir_5053 SM00382 ATPases associated with a variety of cellular activities Amir_5060 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Amir_5061 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_5061 SM00895 Amir_5061 Amir_5063 SM00923 MbtH-like protein Amir_5064 SM00823 Phosphopantetheine attachment site Amir_5068 SM00382 ATPases associated with a variety of cellular activities Amir_5069 SM00849 Metallo-beta-lactamase superfamily Amir_5070 SM00644 Amir_5070 Amir_5070 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. Amir_5072 SM00633 Glycosyl hydrolase family 10 Amir_5072 SM00637 Amir_5072 Amir_5080 SM00346 helix_turn_helix isocitrate lyase regulation Amir_5086 SM00882 Coenzyme A transferase Amir_5087 SM00882 Coenzyme A transferase Amir_5089 SM00382 ATPases associated with a variety of cellular activities Amir_5090 SM00331 Sigma factor PP2C-like phosphatases Amir_5091 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_5091 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_5091 SM00387 Histidine kinase-like ATPases Amir_5091 SM00388 His Kinase A (phosphoacceptor) domain Amir_5091 SM00448 cheY-homologous receiver domain Amir_5102 SM00354 helix_turn _helix lactose operon repressor Amir_5111 SM01012 Amir_5111 Amir_5112 SM00642 Alpha-amylase domain Amir_5113 SM00642 Alpha-amylase domain Amir_5114 SM00642 Alpha-amylase domain Amir_5117 SM00354 helix_turn _helix lactose operon repressor Amir_5128 SM00822 Amir_5128 Amir_5129 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_5129 SM01134 Amir_5129 Amir_5131 SM00382 ATPases associated with a variety of cellular activities Amir_5134 SM00382 ATPases associated with a variety of cellular activities Amir_5142 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Amir_5145 SM00052 Putative diguanylate phosphodiesterase Amir_5145 SM00267 diguanylate cyclase Amir_5147 SM00116 Domain in cystathionine beta-synthase and other proteins. Amir_5151 SM00382 ATPases associated with a variety of cellular activities Amir_5162 SM00382 ATPases associated with a variety of cellular activities Amir_5169 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_5171 SM00960 Roadblock/LC7 domain Amir_5172 SM00387 Histidine kinase-like ATPases Amir_5178 SM00829 Enoylreductase Amir_5186 SM00861 Transketolase, pyrimidine binding domain Amir_5199 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Amir_5206 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Amir_5206 SM00465 GIY-YIG type nucleases (URI domain) Amir_5237 SM01409 Amir_5237 Amir_5238 SM00072 Guanylate kinase homologues. Amir_5240 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Amir_5241 SM00851 MGS-like domain Amir_5241 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Amir_5242 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Amir_5247 SM00530 Helix-turn-helix XRE-family like proteins Amir_5249 SM00841 Elongation factor P, C-terminal Amir_5249 SM01185 Amir_5249 Amir_5259 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_5259 SM00866 Amir_5259 Amir_5264 SM00732 Likely ribonuclease with RNase H fold. Amir_5265 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Amir_5269 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Amir_5272 SM00382 ATPases associated with a variety of cellular activities Amir_5274 SM00487 DEAD-like helicases superfamily Amir_5274 SM00490 helicase superfamily c-terminal domain Amir_5275 SM00028 Tetratricopeptide repeats Amir_5275 SM00382 ATPases associated with a variety of cellular activities Amir_5275 SM00862 Transcriptional regulatory protein, C terminal Amir_5275 SM01043 Bacterial transcriptional activator domain Amir_5276 SM00257 Lysin motif Amir_5278 SM00448 cheY-homologous receiver domain Amir_5278 SM00850 LytTr DNA-binding domain Amir_5281 SM00387 Histidine kinase-like ATPases Amir_5297 SM00829 Enoylreductase Amir_5298 SM00342 helix_turn_helix, arabinose operon control protein Amir_5304 SM00382 ATPases associated with a variety of cellular activities Amir_5306 SM00829 Enoylreductase Amir_5310 SM00420 helix_turn_helix, Deoxyribose operon repressor Amir_5310 SM01134 Amir_5310 Amir_5313 SM01260 Amir_5313 Amir_5315 SM00421 helix_turn_helix, Lux Regulon Amir_5321 SM00458 Ricin-type beta-trefoil Amir_5323 SM00028 Tetratricopeptide repeats Amir_5323 SM00862 Transcriptional regulatory protein, C terminal Amir_5323 SM01043 Bacterial transcriptional activator domain Amir_5326 SM00382 ATPases associated with a variety of cellular activities Amir_5334 SM00495 Chitin-binding domain type 3 Amir_5339 SM00637 Amir_5339 Amir_5343 SM00354 helix_turn _helix lactose operon repressor Amir_5344 SM01091 Transporter associated domain Amir_5347 SM00327 von Willebrand factor (vWF) type A domain Amir_5350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_5353 SM00422 helix_turn_helix, mercury resistance Amir_5355 SM00422 helix_turn_helix, mercury resistance Amir_5356 SM00240 Forkhead associated domain Amir_5374 SM00387 Histidine kinase-like ATPases Amir_5375 SM00421 helix_turn_helix, Lux Regulon Amir_5375 SM00448 cheY-homologous receiver domain Amir_5376 SM00421 helix_turn_helix, Lux Regulon Amir_5385 SM00257 Lysin motif Amir_5393 SM00382 ATPases associated with a variety of cellular activities Amir_5395 SM00530 Helix-turn-helix XRE-family like proteins Amir_5397 SM00382 ATPases associated with a variety of cellular activities Amir_5407 SM00342 helix_turn_helix, arabinose operon control protein Amir_5408 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_5411 SM00028 Tetratricopeptide repeats Amir_5415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Amir_5415 SM00267 diguanylate cyclase Amir_5417 SM00960 Roadblock/LC7 domain Amir_5418 SM00387 Histidine kinase-like ATPases Amir_5421 SM00382 ATPases associated with a variety of cellular activities Amir_5425 SM00363 S4 RNA-binding domain Amir_5430 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_5441 SM00363 S4 RNA-binding domain Amir_5447 SM00054 EF-hand, calcium binding motif Amir_5456 SM00859 Semialdehyde dehydrogenase, NAD binding domain Amir_5457 SM00829 Enoylreductase Amir_5460 SM00530 Helix-turn-helix XRE-family like proteins Amir_5464 SM00873 B3/4 domain Amir_5464 SM00874 tRNA synthetase B5 domain Amir_5464 SM00896 Ferredoxin-fold anticodon binding domain Amir_5467 SM00028 Tetratricopeptide repeats Amir_5468 SM00448 cheY-homologous receiver domain Amir_5468 SM00862 Transcriptional regulatory protein, C terminal Amir_5469 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_5469 SM00387 Histidine kinase-like ATPases Amir_5469 SM00388 His Kinase A (phosphoacceptor) domain Amir_5470 SM00967 RNA 2'-O ribose methyltransferase substrate binding Amir_5476 SM00382 ATPases associated with a variety of cellular activities Amir_5476 SM00530 Helix-turn-helix XRE-family like proteins Amir_5478 SM00346 helix_turn_helix isocitrate lyase regulation Amir_5480 SM01119 Amir_5480 Amir_5486 SM00849 Metallo-beta-lactamase superfamily Amir_5491 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_5494 SM00342 helix_turn_helix, arabinose operon control protein Amir_5500 SM00530 Helix-turn-helix XRE-family like proteins Amir_5502 SM00020 Trypsin-like serine protease Amir_5508 SM00953 Amir_5508 Amir_5511 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_5514 SM00382 ATPases associated with a variety of cellular activities Amir_5514 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Amir_5516 SM00487 DEAD-like helicases superfamily Amir_5516 SM00490 helicase superfamily c-terminal domain Amir_5522 SM00316 Ribosomal protein S1-like RNA-binding domain Amir_5532 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Amir_5532 SM00474 3'-5' exonuclease Amir_5532 SM00475 5'-3' exonuclease Amir_5532 SM00482 DNA polymerase A domain Amir_5535 SM00382 ATPases associated with a variety of cellular activities Amir_5536 SM00382 ATPases associated with a variety of cellular activities Amir_5540 SM00448 cheY-homologous receiver domain Amir_5540 SM01012 Amir_5540 Amir_5544 SM00881 CoA binding domain Amir_5549 SM00341 Helicase and RNase D C-terminal Amir_5549 SM00487 DEAD-like helicases superfamily Amir_5549 SM00490 helicase superfamily c-terminal domain Amir_5549 SM00956 Amir_5549 Amir_5555 SM00530 Helix-turn-helix XRE-family like proteins Amir_5562 SM00507 HNH nucleases Amir_5605 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_5605 SM00866 Amir_5605 Amir_5643 SM00641 Glycosyl hydrolases family 25 Amir_5670 SM00342 helix_turn_helix, arabinose operon control protein Amir_5673 SM00354 helix_turn _helix lactose operon repressor Amir_5675 SM00382 ATPases associated with a variety of cellular activities Amir_5676 SM00382 ATPases associated with a variety of cellular activities Amir_5676 SM00421 helix_turn_helix, Lux Regulon Amir_5677 SM00028 Tetratricopeptide repeats Amir_5677 SM00862 Transcriptional regulatory protein, C terminal Amir_5677 SM01043 Bacterial transcriptional activator domain Amir_5680 SM00530 Helix-turn-helix XRE-family like proteins Amir_5682 SM00947 Carbonic anhydrase Amir_5683 SM01350 Amir_5683 Amir_5696 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_5696 SM00387 Histidine kinase-like ATPases Amir_5696 SM00388 His Kinase A (phosphoacceptor) domain Amir_5698 SM00448 cheY-homologous receiver domain Amir_5698 SM00862 Transcriptional regulatory protein, C terminal Amir_5715 SM00861 Transketolase, pyrimidine binding domain Amir_5717 SM00422 helix_turn_helix, mercury resistance Amir_5723 SM00631 Amir_5723 Amir_5732 SM00464 Found in ATP-dependent protease La (LON) Amir_5738 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_5738 SM00876 Biotin and Thiamin Synthesis associated domain Amir_5743 SM00481 DNA polymerase alpha chain like domain Amir_5752 SM01152 Amir_5752 Amir_5760 SM00864 Tubulin/FtsZ family, GTPase domain Amir_5760 SM00865 Tubulin/FtsZ family, C-terminal domain Amir_5778 SM00460 Transglutaminase/protease-like homologues Amir_5783 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_5783 SM00419 helix_turn_helix, cAMP Regulatory protein Amir_5786 SM01230 Amir_5786 Amir_5790 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Amir_5790 SM01232 Amir_5790 Amir_5797 SM00530 Helix-turn-helix XRE-family like proteins Amir_5800 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_5802 SM00422 helix_turn_helix, mercury resistance Amir_5804 SM00843 Amir_5804 Amir_5805 SM00563 Phosphate acyltransferases Amir_5806 SM00849 Metallo-beta-lactamase superfamily Amir_5807 SM01130 Amir_5807 Amir_5809 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_5823 SM00316 Ribosomal protein S1-like RNA-binding domain Amir_5823 SM00322 K homology RNA-binding domain Amir_5824 SM01387 Amir_5824 Amir_5827 SM00904 Riboflavin kinase Amir_5836 SM00316 Ribosomal protein S1-like RNA-binding domain Amir_5836 SM00322 K homology RNA-binding domain Amir_5850 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_5851 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_5852 SM00090 RIO-like kinase Amir_5853 SM00487 DEAD-like helicases superfamily Amir_5853 SM00490 helicase superfamily c-terminal domain Amir_5855 SM00020 Trypsin-like serine protease Amir_5861 SM00327 von Willebrand factor (vWF) type A domain Amir_5861 SM00382 ATPases associated with a variety of cellular activities Amir_5866 SM00020 Trypsin-like serine protease Amir_5868 SM00020 Trypsin-like serine protease Amir_5869 SM00020 Trypsin-like serine protease Amir_5873 SM00382 ATPases associated with a variety of cellular activities Amir_5873 SM00464 Found in ATP-dependent protease La (LON) Amir_5880 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_5880 SM00895 Amir_5880 Amir_5893 SM00421 helix_turn_helix, Lux Regulon Amir_5893 SM00448 cheY-homologous receiver domain Amir_5898 SM00382 ATPases associated with a variety of cellular activities Amir_5900 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_5902 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_5916 SM00382 ATPases associated with a variety of cellular activities Amir_5930 SM00382 ATPases associated with a variety of cellular activities Amir_5930 SM00962 SRP54-type protein, GTPase domain Amir_5930 SM00963 SRP54-type protein, helical bundle domain Amir_5932 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Amir_5933 SM00938 Nitrogen regulatory protein P-II Amir_5943 SM00346 helix_turn_helix isocitrate lyase regulation Amir_5945 SM00382 ATPases associated with a variety of cellular activities Amir_5945 SM00962 SRP54-type protein, GTPase domain Amir_5945 SM00963 SRP54-type protein, helical bundle domain Amir_5951 SM00563 Phosphate acyltransferases Amir_5952 SM00968 SMC proteins Flexible Hinge Domain Amir_5960 SM00448 cheY-homologous receiver domain Amir_5960 SM00862 Transcriptional regulatory protein, C terminal Amir_5961 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_5962 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Amir_5962 SM01232 Amir_5962 Amir_5964 SM00358 Double-stranded RNA binding motif Amir_5964 SM00535 Ribonuclease III family Amir_5973 SM00878 Biotin carboxylase C-terminal domain Amir_5977 SM00487 DEAD-like helicases superfamily Amir_5977 SM00490 helicase superfamily c-terminal domain Amir_5978 SM01120 Amir_5978 Amir_5978 SM01121 Amir_5978 Amir_5981 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_5982 SM00986 Uracil DNA glycosylase superfamily Amir_5982 SM00987 UreE urease accessory protein, C-terminal domain Amir_5991 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_5999 SM00563 Phosphate acyltransferases Amir_6003 SM00855 Phosphoglycerate mutase family Amir_6004 SM00411 bacterial (prokaryotic) histone like domain Amir_6007 SM00346 helix_turn_helix isocitrate lyase regulation Amir_6013 SM00917 LeuA allosteric (dimerisation) domain Amir_6014 SM01329 Amir_6014 Amir_6023 SM00756 Amir_6023 Amir_6030 SM00028 Tetratricopeptide repeats Amir_6032 SM00845 GatB domain Amir_6038 SM00292 breast cancer carboxy-terminal domain Amir_6038 SM00532 Ligase N family Amir_6048 SM00563 Phosphate acyltransferases Amir_6050 SM00893 Electron transfer flavoprotein domain Amir_6051 SM00893 Electron transfer flavoprotein domain Amir_6066 SM00382 ATPases associated with a variety of cellular activities Amir_6067 SM00642 Alpha-amylase domain Amir_6069 SM00450 Rhodanese Homology Domain Amir_6072 SM00642 Alpha-amylase domain Amir_6073 SM00642 Alpha-amylase domain Amir_6075 SM00642 Alpha-amylase domain Amir_6082 SM00347 helix_turn_helix multiple antibiotic resistance protein Amir_6085 SM00382 ATPases associated with a variety of cellular activities Amir_6090 SM00354 helix_turn _helix lactose operon repressor Amir_6092 SM00382 ATPases associated with a variety of cellular activities Amir_6098 SM00421 helix_turn_helix, Lux Regulon Amir_6098 SM00448 cheY-homologous receiver domain Amir_6099 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_6099 SM00387 Histidine kinase-like ATPases Amir_6110 SM00834 Putative regulatory protein Amir_6113 SM01120 Amir_6113 Amir_6121 SM00530 Helix-turn-helix XRE-family like proteins Amir_6136 SM00382 ATPases associated with a variety of cellular activities Amir_6150 SM00937 Amir_6150 Amir_6153 SM00357 Cold shock protein domain Amir_6153 SM00382 ATPases associated with a variety of cellular activities Amir_6153 SM00959 Rho termination factor, N-terminal domain Amir_6158 SM00836 DALR anticodon binding domain Amir_6158 SM01016 Arginyl tRNA synthetase N terminal dom Amir_6166 SM00382 ATPases associated with a variety of cellular activities Amir_6166 SM00862 Transcriptional regulatory protein, C terminal Amir_6166 SM01043 Bacterial transcriptional activator domain Amir_6168 SM00530 Helix-turn-helix XRE-family like proteins Amir_6173 SM00871 Bacterial transcription activator, effector binding domain Amir_6175 SM00382 ATPases associated with a variety of cellular activities Amir_6185 SM00382 ATPases associated with a variety of cellular activities Amir_6186 SM00382 ATPases associated with a variety of cellular activities Amir_6197 SM00342 helix_turn_helix, arabinose operon control protein Amir_6200 SM00829 Enoylreductase Amir_6202 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_6203 SM00331 Sigma factor PP2C-like phosphatases Amir_6203 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Amir_6206 SM00636 Amir_6206 Amir_6206 SM00637 Amir_6206 Amir_6207 SM00382 ATPases associated with a variety of cellular activities Amir_6208 SM00448 cheY-homologous receiver domain Amir_6208 SM00862 Transcriptional regulatory protein, C terminal Amir_6209 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_6209 SM00387 Histidine kinase-like ATPases Amir_6209 SM00388 His Kinase A (phosphoacceptor) domain Amir_6217 SM00903 Flavin reductase like domain Amir_6221 SM00028 Tetratricopeptide repeats Amir_6221 SM00382 ATPases associated with a variety of cellular activities Amir_6221 SM00862 Transcriptional regulatory protein, C terminal Amir_6221 SM01043 Bacterial transcriptional activator domain Amir_6223 SM00052 Putative diguanylate phosphodiesterase Amir_6223 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Amir_6223 SM00091 PAS domain Amir_6223 SM00267 diguanylate cyclase Amir_6229 SM00878 Biotin carboxylase C-terminal domain Amir_6235 SM00421 helix_turn_helix, Lux Regulon Amir_6235 SM00448 cheY-homologous receiver domain Amir_6236 SM00387 Histidine kinase-like ATPases Amir_6238 SM00060 Fibronectin type 3 domain Amir_6238 SM00637 Amir_6238 Amir_6248 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Amir_6248 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Amir_6250 SM00382 ATPases associated with a variety of cellular activities Amir_6252 SM00382 ATPases associated with a variety of cellular activities Amir_6253 SM00861 Transketolase, pyrimidine binding domain Amir_6257 SM00530 Helix-turn-helix XRE-family like proteins Amir_6267 SM00346 helix_turn_helix isocitrate lyase regulation Amir_6271 SM00382 ATPases associated with a variety of cellular activities Amir_6278 SM00052 Putative diguanylate phosphodiesterase Amir_6278 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Amir_6278 SM00091 PAS domain Amir_6278 SM00267 diguanylate cyclase Amir_6279 SM00919 Malic enzyme, NAD binding domain Amir_6279 SM01274 Amir_6279 Amir_6284 SM00855 Phosphoglycerate mutase family Amir_6286 SM00020 Trypsin-like serine protease Amir_6288 SM00046 Diacylglycerol kinase catalytic domain (presumed) Amir_6290 SM00387 Histidine kinase-like ATPases Amir_6302 SM00967 RNA 2'-O ribose methyltransferase substrate binding Amir_6305 SM00957 SecA DEAD-like domain Amir_6305 SM00958 SecA preprotein cross-linking domain Amir_6308 SM00909 Sporulation and spore germination Amir_6309 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_6309 SM00387 Histidine kinase-like ATPases Amir_6309 SM00388 His Kinase A (phosphoacceptor) domain Amir_6310 SM00448 cheY-homologous receiver domain Amir_6310 SM00862 Transcriptional regulatory protein, C terminal Amir_6321 SM00996 S-adenosyl-L-homocysteine hydrolase Amir_6321 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Amir_6352 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Amir_6356 SM00530 Helix-turn-helix XRE-family like proteins Amir_6358 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_6367 SM01001 AIR carboxylase Amir_6370 SM00382 ATPases associated with a variety of cellular activities Amir_6371 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_6380 SM00448 cheY-homologous receiver domain Amir_6380 SM00862 Transcriptional regulatory protein, C terminal Amir_6381 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Amir_6381 SM00387 Histidine kinase-like ATPases Amir_6381 SM00388 His Kinase A (phosphoacceptor) domain Amir_6396 SM00878 Biotin carboxylase C-terminal domain Amir_6405 SM00421 helix_turn_helix, Lux Regulon Amir_6405 SM00448 cheY-homologous receiver domain Amir_6407 SM00382 ATPases associated with a variety of cellular activities Amir_6420 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_6425 SM00422 helix_turn_helix, mercury resistance Amir_6431 SM00320 WD40 repeats Amir_6434 SM00530 Helix-turn-helix XRE-family like proteins Amir_6449 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Amir_6453 SM00382 ATPases associated with a variety of cellular activities Amir_6472 SM00729 Elongator protein 3, MiaB family, Radical SAM Amir_6478 SM01329 Amir_6478 Amir_6481 SM00271 DnaJ molecular chaperone homology domain Amir_6482 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_6487 SM00382 ATPases associated with a variety of cellular activities Amir_6503 SM00798 AICARFT/IMPCHase bienzyme Amir_6503 SM00851 MGS-like domain Amir_6507 SM00881 CoA binding domain Amir_6514 SM00830 Chorismate mutase type II Amir_6520 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_6521 SM00220 Serine/Threonine protein kinases, catalytic domain Amir_6525 SM00421 helix_turn_helix, Lux Regulon Amir_6525 SM00448 cheY-homologous receiver domain Amir_6534 SM01240 Amir_6534 Amir_6535 SM00116 Domain in cystathionine beta-synthase and other proteins. Amir_6535 SM01240 Amir_6535 Amir_6539 SM00421 helix_turn_helix, Lux Regulon Amir_6539 SM00448 cheY-homologous receiver domain Amir_6541 SM00422 helix_turn_helix, mercury resistance Amir_6544 SM00883 Chaperonin 10 Kd subunit Amir_6549 SM00422 helix_turn_helix, mercury resistance Amir_6556 SM01005 Alanine racemase, C-terminal domain Amir_6583 SM00662 RNA polymerases D Amir_6584 SM00363 S4 RNA-binding domain Amir_6584 SM01390 Amir_6584 Amir_6603 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Amir_6604 SM01374 Amir_6604 Amir_6608 SM00322 K homology RNA-binding domain Amir_6611 SM01382 Amir_6611 Amir_6611 SM01383 Amir_6611 Amir_6615 SM01403 Amir_6615 Amir_6617 SM00838 Elongation factor G C-terminus Amir_6617 SM00889 Elongation factor G, domain IV Amir_6626 SM00663 RNA polymerase I subunit A N-terminus Amir_6635 SM00382 ATPases associated with a variety of cellular activities Amir_6640 SM00649 Ribosomal protein L11/L12 Amir_6641 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Amir_6641 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Amir_6649 SM00052 Putative diguanylate phosphodiesterase Amir_6649 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Amir_6649 SM00267 diguanylate cyclase Amir_6662 SM00344 helix_turn_helix ASNC type Amir_6676 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Amir_6676 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Amir_6677 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Amir_6705 SM00530 Helix-turn-helix XRE-family like proteins Amir_6708 SM00344 helix_turn_helix ASNC type Amir_6716 SM00829 Enoylreductase Amir_6718 SM00855 Phosphoglycerate mutase family Amir_6727 SM01004 Delta-aminolevulinic acid dehydratase Amir_6731 SM00881 CoA binding domain Amir_6732 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Amir_6739 SM00563 Phosphate acyltransferases Amir_6741 SM01155 Amir_6741 Amir_6749 SM00448 cheY-homologous receiver domain Amir_6749 SM00862 Transcriptional regulatory protein, C terminal Amir_6750 SM00387 Histidine kinase-like ATPases Amir_6750 SM00388 His Kinase A (phosphoacceptor) domain Amir_6753 SM00855 Phosphoglycerate mutase family Amir_6769 SM00422 helix_turn_helix, mercury resistance Amir_6774 SM00530 Helix-turn-helix XRE-family like proteins Amir_6782 SM00382 ATPases associated with a variety of cellular activities Amir_6790 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_6800 SM00357 Cold shock protein domain Amir_6801 SM00062 Bacterial periplasmic substrate-binding proteins Amir_6807 SM00829 Enoylreductase Amir_6813 SM00267 diguanylate cyclase Amir_6818 SM00382 ATPases associated with a variety of cellular activities Amir_6823 SM00862 Transcriptional regulatory protein, C terminal Amir_6828 SM00450 Rhodanese Homology Domain Amir_6832 SM00796 Allophanate hydrolase subunit 1 Amir_6834 SM00797 Allophanate hydrolase subunit 2 Amir_6844 SM00100 Cyclic nucleotide-monophosphate binding domain Amir_6849 SM00382 ATPases associated with a variety of cellular activities Amir_6854 SM00354 helix_turn _helix lactose operon repressor Amir_6857 SM00530 Helix-turn-helix XRE-family like proteins Amir_6871 SM00052 Putative diguanylate phosphodiesterase Amir_6871 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Amir_6871 SM00091 PAS domain Amir_6871 SM00267 diguanylate cyclase Amir_6874 SM00641 Glycosyl hydrolases family 25 Amir_6875 SM00641 Glycosyl hydrolases family 25 Amir_6877 SM01211 Amir_6877 Amir_6881 SM00849 Metallo-beta-lactamase superfamily Amir_6884 SM00062 Bacterial periplasmic substrate-binding proteins Amir_6884 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Amir_6886 SM00382 ATPases associated with a variety of cellular activities Amir_6888 SM00998 Adenylosuccinate lyase C-terminus Amir_6903 SM01209 Amir_6903 Amir_6903 SM01210 Amir_6903 Amir_6908 SM00788 Adenylosuccinate synthetase Amir_6920 SM00822 Amir_6920 Amir_6931 SM00354 helix_turn _helix lactose operon repressor Amir_6933 SM00967 RNA 2'-O ribose methyltransferase substrate binding Amir_6941 SM00822 Amir_6941 Amir_6943 SM00382 ATPases associated with a variety of cellular activities Amir_6943 SM01086 C-terminal, D2-small domain, of ClpB protein Amir_6946 SM00422 helix_turn_helix, mercury resistance Amir_6947 SM00271 DnaJ molecular chaperone homology domain Amir_6962 SM00421 helix_turn_helix, Lux Regulon Amir_6966 SM00883 Chaperonin 10 Kd subunit Amir_6973 SM00822 Amir_6973 Amir_6980 SM00422 helix_turn_helix, mercury resistance Amir_6982 SM00861 Transketolase, pyrimidine binding domain Amir_6986 SM00062 Bacterial periplasmic substrate-binding proteins Amir_6986 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Amir_6988 SM00382 ATPases associated with a variety of cellular activities Amir_6997 SM00345 helix_turn_helix gluconate operon transcriptional repressor Amir_6997 SM00895 Amir_6997 Amir_7002 SM00530 Helix-turn-helix XRE-family like proteins Amir_7008 SM00387 Histidine kinase-like ATPases Amir_7009 SM00421 helix_turn_helix, Lux Regulon Amir_7009 SM00448 cheY-homologous receiver domain Amir_7014 SM00387 Histidine kinase-like ATPases Amir_7020 SM00382 ATPases associated with a variety of cellular activities Amir_7025 SM00822 Amir_7025 Amir_7037 SM00518 AP endonuclease family 2 Amir_7045 SM00822 Amir_7045 Amir_7046 SM00530 Helix-turn-helix XRE-family like proteins Amir_7047 SM00479 Amir_7047 Amir_7048 SM00267 diguanylate cyclase Amir_7053 SM00267 diguanylate cyclase Amir_7055 SM00421 helix_turn_helix, Lux Regulon Amir_7055 SM00448 cheY-homologous receiver domain Amir_7063 SM00829 Enoylreductase Amir_7079 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Amir_7088 SM00646 Amir_7088 Amir_7092 SM00470 ParB-like nuclease domain Amir_7096 SM00393 Putative single-stranded nucleic acids-binding domain Amir_7098 SM01234 Amir_7098