locus-tag class description MRB58_00010 PF00701 Dihydrodipicolinate synthetase family MRB58_00015 PF08543 Phosphomethylpyrimidine kinase MRB58_00020 PF02581 Thiamine monophosphate synthase MRB58_00040 PF02277 Phosphoribosyltransferase MRB58_00050 PF02654 Cobalamin-5-phosphate synthase MRB58_00055 PF01207 Dihydrouridine synthase (Dus) MRB58_00060 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MRB58_00060 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MRB58_00060 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MRB58_00065 PF00072 Response regulator receiver domain MRB58_00065 PF00196 Bacterial regulatory proteins, luxR family MRB58_00070 PF08448 PAS fold MRB58_00070 PF00512 His Kinase A (phospho-acceptor) domain MRB58_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_00070 PF00072 Response regulator receiver domain MRB58_00070 PF13188 PAS domain MRB58_00080 PF01343 Peptidase family S49 MRB58_00080 PF06965 Na+/H+ antiporter 1 MRB58_00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_00085 PF03466 LysR substrate binding domain MRB58_00100 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MRB58_00105 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_00110 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_00115 PF01244 Membrane dipeptidase (Peptidase family M19) MRB58_00160 PF03958 Bacterial type II/III secretion system short domain MRB58_00160 PF00263 Bacterial type II and III secretion system protein MRB58_00165 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain MRB58_00165 PF00437 Type II/IV secretion system protein MRB58_00200 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00205 PF00005 ABC transporter MRB58_00210 PF00491 Arginase family MRB58_00220 PF06224 Winged helix DNA-binding domain MRB58_00230 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family MRB58_00250 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00255 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00260 PF00005 ABC transporter MRB58_00260 PF17912 MalK OB fold domain MRB58_00260 PF03459 TOBE domain MRB58_00265 PF00005 ABC transporter MRB58_00265 PF17912 MalK OB fold domain MRB58_00265 PF03459 TOBE domain MRB58_00270 PF01266 FAD dependent oxidoreductase MRB58_00270 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MRB58_00275 PF00455 DeoR C terminal sensor domain MRB58_00275 PF08220 DeoR-like helix-turn-helix domain MRB58_00280 PF01475 Ferric uptake regulator family MRB58_00285 PF00990 Diguanylate cyclase, GGDEF domain MRB58_00295 PF01037 Lrp/AsnC ligand binding domain MRB58_00305 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MRB58_00305 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MRB58_00315 PF00970 Oxidoreductase FAD-binding domain MRB58_00315 PF00175 Oxidoreductase NAD-binding domain MRB58_00320 PF01507 Phosphoadenosine phosphosulfate reductase family MRB58_00325 PF01557 Fumarylacetoacetate (FAA) hydrolase family MRB58_00330 PF03301 Tryptophan 2,3-dioxygenase MRB58_00335 PF00266 Aminotransferase class-V MRB58_00340 PF02541 Ppx/GppA phosphatase family MRB58_00345 PF02503 Polyphosphate kinase middle domain MRB58_00345 PF13090 Polyphosphate kinase C-terminal domain 2 MRB58_00345 PF13089 Polyphosphate kinase N-terminal domain MRB58_00345 PF17941 Polyphosphate kinase C-terminal domain 1 MRB58_00355 PF00586 AIR synthase related protein, N-terminal domain MRB58_00355 PF02769 AIR synthase related protein, C-terminal domain MRB58_00360 PF00551 Formyl transferase MRB58_00370 PF00005 ABC transporter MRB58_00375 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00380 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00385 PF00795 Carbon-nitrogen hydrolase MRB58_00390 PF01613 Flavin reductase like domain MRB58_00395 PF01551 Peptidase family M23 MRB58_00395 PF01476 LysM domain MRB58_00405 PF02403 Seryl-tRNA synthetase N-terminal domain MRB58_00405 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRB58_00410 PF01244 Membrane dipeptidase (Peptidase family M19) MRB58_00415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_00420 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00425 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_00425 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00430 PF00005 ABC transporter MRB58_00430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_00435 PF00005 ABC transporter MRB58_00435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_00450 PF03886 ABC-type transport auxiliary lipoprotein component MRB58_00450 PF02470 MlaD protein MRB58_00455 PF00005 ABC transporter MRB58_00460 PF02405 Permease MlaE MRB58_00470 PF13378 Enolase C-terminal domain-like MRB58_00470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_00475 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_00480 PF00149 Calcineurin-like phosphoesterase MRB58_00490 PF00535 Glycosyl transferase family 2 MRB58_00500 PF01053 Cys/Met metabolism PLP-dependent enzyme MRB58_00505 PF00497 Bacterial extracellular solute-binding proteins, family 3 MRB58_00510 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00515 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_00520 PF00005 ABC transporter MRB58_00535 PF01050 Mannose-6-phosphate isomerase MRB58_00535 PF00483 Nucleotidyl transferase MRB58_00545 PF02803 Thiolase, C-terminal domain MRB58_00545 PF00108 Thiolase, N-terminal domain MRB58_00550 PF00378 Enoyl-CoA hydratase/isomerase MRB58_00555 PF00501 AMP-binding enzyme MRB58_00555 PF13193 AMP-binding enzyme C-terminal domain MRB58_00560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_00560 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_00560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_00570 PF13193 AMP-binding enzyme C-terminal domain MRB58_00570 PF00501 AMP-binding enzyme MRB58_00580 PF00501 AMP-binding enzyme MRB58_00580 PF13193 AMP-binding enzyme C-terminal domain MRB58_00585 PF00364 Biotin-requiring enzyme MRB58_00585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRB58_00585 PF00289 Biotin carboxylase, N-terminal domain MRB58_00585 PF02785 Biotin carboxylase C-terminal domain MRB58_00590 PF01039 Carboxyl transferase domain MRB58_00595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_00595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_00595 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_00600 PF00440 Bacterial regulatory proteins, tetR family MRB58_00600 PF17932 Tetracyclin repressor-like, C-terminal domain MRB58_00605 PF00005 ABC transporter MRB58_00605 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_00610 PF13193 AMP-binding enzyme C-terminal domain MRB58_00610 PF00501 AMP-binding enzyme MRB58_00615 PF02653 Branched-chain amino acid transport system / permease component MRB58_00630 PF00005 ABC transporter MRB58_00640 PF01590 GAF domain MRB58_00640 PF08446 PAS fold MRB58_00640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_00640 PF00512 His Kinase A (phospho-acceptor) domain MRB58_00640 PF00360 Phytochrome region MRB58_00645 PF00072 Response regulator receiver domain MRB58_00650 PF02954 Bacterial regulatory protein, Fis family MRB58_00650 PF00072 Response regulator receiver domain MRB58_00650 PF00158 Sigma-54 interaction domain MRB58_00655 PF07689 KaiB domain MRB58_00660 PF06745 KaiC MRB58_00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_00665 PF00072 Response regulator receiver domain MRB58_00665 PF00512 His Kinase A (phospho-acceptor) domain MRB58_00665 PF08448 PAS fold MRB58_00665 PF13188 PAS domain MRB58_00670 PF01676 Metalloenzyme superfamily MRB58_00670 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MRB58_00675 PF00529 HlyD membrane-fusion protein of T1SS MRB58_00675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRB58_00695 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_00705 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_00710 PF01979 Amidohydrolase family MRB58_00715 PF00266 Aminotransferase class-V MRB58_00720 PF02347 Glycine cleavage system P-protein MRB58_00735 PF01597 Glycine cleavage H-protein MRB58_00740 PF08669 Glycine cleavage T-protein C-terminal barrel domain MRB58_00740 PF01571 Aminomethyltransferase folate-binding domain MRB58_00745 PF03060 Nitronate monooxygenase MRB58_00750 PF01575 MaoC like domain MRB58_00755 PF02515 CoA-transferase family III MRB58_00760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_00775 PF01565 FAD binding domain MRB58_00775 PF02913 FAD linked oxidases, C-terminal domain MRB58_00780 PF03737 Aldolase/RraA MRB58_00785 PF00676 Dehydrogenase E1 component MRB58_00785 PF16870 2-oxoglutarate dehydrogenase C-terminal MRB58_00785 PF02779 Transketolase, pyrimidine binding domain MRB58_00785 PF16078 2-oxoglutarate dehydrogenase N-terminus MRB58_00795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_00795 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_00795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_00800 PF02515 CoA-transferase family III MRB58_00815 PF13649 Methyltransferase domain MRB58_00815 PF08241 Methyltransferase domain MRB58_00820 PF03725 3' exoribonuclease family, domain 2 MRB58_00820 PF00575 S1 RNA binding domain MRB58_00820 PF01138 3' exoribonuclease family, domain 1 MRB58_00820 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MRB58_00820 PF00013 KH domain MRB58_00825 PF00312 Ribosomal protein S15 MRB58_00835 PF01509 TruB family pseudouridylate synthase (N terminal domain) MRB58_00835 PF16198 tRNA pseudouridylate synthase B C-terminal domain MRB58_00835 PF09157 Pseudouridine synthase II TruB, C-terminal MRB58_00845 PF04760 Translation initiation factor IF-2, N-terminal region MRB58_00845 PF11987 Translation-initiation factor 2 MRB58_00845 PF00009 Elongation factor Tu GTP binding domain MRB58_00845 PF08364 Bacterial translation initiation factor IF-2 associated region MRB58_00855 PF13184 NusA-like KH domain MRB58_00855 PF08529 NusA N-terminal domain MRB58_00855 PF00575 S1 RNA binding domain MRB58_00860 PF02576 RimP N-terminal domain MRB58_00860 PF17384 RimP C-terminal SH3 domain MRB58_00865 PF00293 NUDIX domain MRB58_00870 PF00255 Glutathione peroxidase MRB58_00880 PF00285 Citrate synthase, C-terminal domain MRB58_00885 PF07690 Major Facilitator Superfamily MRB58_00890 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRB58_00900 PF02684 Lipid-A-disaccharide synthetase MRB58_00910 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_00910 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 MRB58_00915 PF07977 FabA-like domain MRB58_00920 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_00920 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD MRB58_00925 PF07244 Surface antigen variable number repeat MRB58_00925 PF01103 Surface antigen MRB58_00930 PF02163 Peptidase family M50 MRB58_00930 PF17820 PDZ domain MRB58_00935 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MRB58_00935 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MRB58_00935 PF13288 DXP reductoisomerase C-terminal domain MRB58_00945 PF01255 Putative undecaprenyl diphosphate synthase MRB58_00950 PF01765 Ribosome recycling factor MRB58_00955 PF00696 Amino acid kinase family MRB58_00960 PF00889 Elongation factor TS MRB58_00965 PF00484 Carbonic anhydrase MRB58_00970 PF00205 Thiamine pyrophosphate enzyme, central domain MRB58_00970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRB58_00970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRB58_00975 PF02515 CoA-transferase family III MRB58_00980 PF00925 GTP cyclohydrolase II MRB58_00985 PF03450 CO dehydrogenase flavoprotein C-terminal domain MRB58_00985 PF00941 FAD binding domain in molybdopterin dehydrogenase MRB58_00990 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_00990 PF01799 [2Fe-2S] binding domain MRB58_00995 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_00995 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_01000 PF13302 Acetyltransferase (GNAT) domain MRB58_01000 PF13673 Acetyltransferase (GNAT) domain MRB58_01000 PF03352 Methyladenine glycosylase MRB58_01000 PF00117 Glutamine amidotransferase class-I MRB58_01000 PF00958 GMP synthase C terminal domain MRB58_01005 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MRB58_01005 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MRB58_01010 PF00551 Formyl transferase MRB58_01020 PF01266 FAD dependent oxidoreductase MRB58_01025 PF02515 CoA-transferase family III MRB58_01030 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_01030 PF01968 Hydantoinase/oxoprolinase MRB58_01040 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_01050 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_01065 PF00318 Ribosomal protein S2 MRB58_01075 PF01322 Cytochrome C' MRB58_01080 PF00034 Cytochrome c MRB58_01085 PF01145 SPFH domain / Band 7 family MRB58_01085 PF16200 C-terminal region of band_7 MRB58_01095 PF03749 Sugar fermentation stimulation protein RE domain MRB58_01095 PF17746 SfsA N-terminal OB domain MRB58_01100 PF00557 Metallopeptidase family M24 MRB58_01105 PF04002 RadC-like JAB domain MRB58_01110 PF17284 Spermidine synthase tetramerisation domain MRB58_01115 PF02675 S-adenosylmethionine decarboxylase MRB58_01130 PF00873 AcrB/AcrD/AcrF family MRB58_01145 PF00005 ABC transporter MRB58_01145 PF00664 ABC transporter transmembrane region MRB58_01150 PF16658 Class II release factor RF3, C-terminal domain MRB58_01150 PF00009 Elongation factor Tu GTP binding domain MRB58_01155 PF01593 Flavin containing amine oxidoreductase MRB58_01165 PF13335 Magnesium chelatase, subunit ChlI C-terminal MRB58_01165 PF01078 Magnesium chelatase, subunit ChlI MRB58_01170 PF02146 Sir2 family MRB58_01175 PF00313 'Cold-shock' DNA-binding domain MRB58_01285 PF00171 Aldehyde dehydrogenase family MRB58_01295 PF01268 Formate--tetrahydrofolate ligase MRB58_01300 PF00392 Bacterial regulatory proteins, gntR family MRB58_01300 PF07729 FCD domain MRB58_01310 PF04115 Ureidoglycolate lyase MRB58_01315 PF00005 ABC transporter MRB58_01315 PF08402 TOBE domain MRB58_01325 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_01330 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_01335 PF00128 Alpha amylase, catalytic domain MRB58_01345 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_01350 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_01355 PF00005 ABC transporter MRB58_01355 PF08402 TOBE domain MRB58_01365 PF03616 Sodium/glutamate symporter MRB58_01390 PF00664 ABC transporter transmembrane region MRB58_01390 PF00005 ABC transporter MRB58_01390 PF03412 Peptidase C39 family MRB58_01395 PF00529 HlyD membrane-fusion protein of T1SS MRB58_01395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRB58_01405 PF00691 OmpA family MRB58_01405 PF13505 Outer membrane protein beta-barrel domain MRB58_01415 PF03069 Acetamidase/Formamidase family MRB58_01425 PF00501 AMP-binding enzyme MRB58_01425 PF13193 AMP-binding enzyme C-terminal domain MRB58_01430 PF01370 NAD dependent epimerase/dehydratase family MRB58_01435 PF01266 FAD dependent oxidoreductase MRB58_01445 PF09371 Tex-like protein N-terminal domain MRB58_01445 PF16921 Tex protein YqgF-like domain MRB58_01445 PF17674 HHH domain MRB58_01445 PF00575 S1 RNA binding domain MRB58_01475 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MRB58_01480 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MRB58_01485 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MRB58_01495 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MRB58_01505 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MRB58_01505 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MRB58_01505 PF10531 SLBB domain MRB58_01515 PF00682 HMGL-like MRB58_01520 PF00392 Bacterial regulatory proteins, gntR family MRB58_01520 PF00155 Aminotransferase class I and II MRB58_01525 PF00368 Hydroxymethylglutaryl-coenzyme A reductase MRB58_01530 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_01540 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_01545 PF08450 SMP-30/Gluconolactonase/LRE-like region MRB58_01550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MRB58_01550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MRB58_01555 PF00378 Enoyl-CoA hydratase/isomerase MRB58_01575 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_01590 PF00501 AMP-binding enzyme MRB58_01590 PF07993 Male sterility protein MRB58_01590 PF00550 Phosphopantetheine attachment site MRB58_01600 PF02789 Cytosol aminopeptidase family, N-terminal domain MRB58_01600 PF00883 Cytosol aminopeptidase family, catalytic domain MRB58_01605 PF00877 NlpC/P60 family MRB58_01620 PF03466 LysR substrate binding domain MRB58_01620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_01625 PF01313 Bacterial export proteins, family 3 MRB58_01630 PF03963 Flagellar hook capping protein - N-terminal region MRB58_01635 PF07378 Flagellar protein FlbT MRB58_01655 PF00460 Flagella basal body rod protein MRB58_01655 PF07559 Flagellar basal body protein FlaE MRB58_01655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MRB58_01660 PF18269 T3SS EscN ATPase C-terminal domain MRB58_01660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MRB58_01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRB58_01675 PF00384 Molybdopterin oxidoreductase MRB58_01675 PF01568 Molydopterin dinucleotide binding domain MRB58_01675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MRB58_01710 PF00561 alpha/beta hydrolase fold MRB58_01720 PF00294 pfkB family carbohydrate kinase MRB58_01770 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_01770 PF07724 AAA domain (Cdc48 subfamily) MRB58_01770 PF17871 AAA lid domain MRB58_01770 PF02861 Clp amino terminal domain, pathogenicity island component MRB58_01770 PF10431 C-terminal, D2-small domain, of ClpB protein MRB58_01775 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_01780 PF00892 EamA-like transporter family MRB58_01785 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_01785 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_01795 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_01795 PF01799 [2Fe-2S] binding domain MRB58_01810 PF03551 Transcriptional regulator PadR-like family MRB58_01810 PF13847 Methyltransferase domain MRB58_01825 PF15975 Flotillin MRB58_01825 PF01145 SPFH domain / Band 7 family MRB58_01825 PF15975 Flotillin MRB58_01825 PF01145 SPFH domain / Band 7 family MRB58_01830 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MRB58_01835 PF09370 Phosphoenolpyruvate hydrolase-like MRB58_01845 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_01845 PF00005 ABC transporter MRB58_01855 PF02653 Branched-chain amino acid transport system / permease component MRB58_01860 PF02311 AraC-like ligand binding domain MRB58_01860 PF12833 Helix-turn-helix domain MRB58_01870 PF02803 Thiolase, C-terminal domain MRB58_01870 PF00108 Thiolase, N-terminal domain MRB58_01880 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_01885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRB58_01890 PF00970 Oxidoreductase FAD-binding domain MRB58_01890 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_01890 PF00175 Oxidoreductase NAD-binding domain MRB58_01895 PF00355 Rieske [2Fe-2S] domain MRB58_01895 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MRB58_01900 PF03466 LysR substrate binding domain MRB58_01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_01905 PF01965 DJ-1/PfpI family MRB58_01910 PF01266 FAD dependent oxidoreductase MRB58_01920 PF17806 Sarcosine oxidase A3 domain MRB58_01920 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_01920 PF01571 Aminomethyltransferase folate-binding domain MRB58_01920 PF08669 Glycine cleavage T-protein C-terminal barrel domain MRB58_01935 PF00144 Beta-lactamase MRB58_01940 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MRB58_01940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MRB58_01945 PF00999 Sodium/hydrogen exchanger family MRB58_01955 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_01960 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_01960 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_01965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRB58_01965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRB58_01995 PF00005 ABC transporter MRB58_02000 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_02000 PF00005 ABC transporter MRB58_02025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRB58_02025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRB58_02030 PF07702 UTRA domain MRB58_02030 PF00392 Bacterial regulatory proteins, gntR family MRB58_02040 PF01979 Amidohydrolase family MRB58_02045 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_02055 PF07681 DoxX MRB58_02060 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRB58_02065 PF04303 PrpF protein MRB58_02070 PF02515 CoA-transferase family III MRB58_02075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_02090 PF00106 short chain dehydrogenase MRB58_02095 PF09339 IclR helix-turn-helix domain MRB58_02095 PF01614 Bacterial transcriptional regulator MRB58_02100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_02100 PF03466 LysR substrate binding domain MRB58_02110 PF00440 Bacterial regulatory proteins, tetR family MRB58_02110 PF16925 Tetracyclin repressor-like, C-terminal domain MRB58_02135 PF03069 Acetamidase/Formamidase family MRB58_02140 PF00989 PAS fold MRB58_02140 PF13426 PAS domain MRB58_02140 PF00512 His Kinase A (phospho-acceptor) domain MRB58_02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_02140 PF13493 Domain of unknown function (DUF4118) MRB58_02140 PF08447 PAS fold MRB58_02145 PF00072 Response regulator receiver domain MRB58_02145 PF00196 Bacterial regulatory proteins, luxR family MRB58_02150 PF00005 ABC transporter MRB58_02155 PF00005 ABC transporter MRB58_02155 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_02160 PF02653 Branched-chain amino acid transport system / permease component MRB58_02165 PF13458 Periplasmic binding protein MRB58_02170 PF00795 Carbon-nitrogen hydrolase MRB58_02190 PF03466 LysR substrate binding domain MRB58_02190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_02210 PF16868 NMT1-like family MRB58_02235 PF07729 FCD domain MRB58_02235 PF00392 Bacterial regulatory proteins, gntR family MRB58_02240 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_02250 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_02265 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_02270 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_02270 PF01799 [2Fe-2S] binding domain MRB58_02280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MRB58_02280 PF13360 PQQ-like domain MRB58_02305 PF10397 Adenylosuccinate lyase C-terminus MRB58_02305 PF00206 Lyase MRB58_02325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_02330 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_02335 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_02350 PF00202 Aminotransferase class-III MRB58_02355 PF01008 Initiation factor 2 subunit family MRB58_02365 PF00294 pfkB family carbohydrate kinase MRB58_02370 PF01081 KDPG and KHG aldolase MRB58_02380 PF01189 16S rRNA methyltransferase RsmB/F MRB58_02380 PF01029 NusB family MRB58_02390 PF00571 CBS domain MRB58_02390 PF00478 IMP dehydrogenase / GMP reductase domain MRB58_02420 PF00933 Glycosyl hydrolase family 3 N terminal domain MRB58_02430 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter MRB58_02435 PF00119 ATP synthase A chain MRB58_02440 PF00137 ATP synthase subunit C MRB58_02445 PF00430 ATP synthase B/B' CF(0) MRB58_02450 PF00430 ATP synthase B/B' CF(0) MRB58_02470 PF00557 Metallopeptidase family M24 MRB58_02470 PF01321 Creatinase/Prolidase N-terminal domain MRB58_02475 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRB58_02475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRB58_02485 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_02485 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_02490 PF00037 4Fe-4S binding domain MRB58_02505 PF13458 Periplasmic binding protein MRB58_02515 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_02515 PF00005 ABC transporter MRB58_02520 PF01810 LysE type translocator MRB58_02525 PF00005 ABC transporter MRB58_02530 PF12802 MarR family MRB58_02550 PF02685 Glucokinase MRB58_02550 PF01380 SIS domain MRB58_02550 PF01418 Helix-turn-helix domain, rpiR family MRB58_02555 PF01042 Endoribonuclease L-PSP MRB58_02560 PF01979 Amidohydrolase family MRB58_02570 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_02580 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_02585 PF00202 Aminotransferase class-III MRB58_02590 PF14031 Putative serine dehydratase domain MRB58_02590 PF01168 Alanine racemase, N-terminal domain MRB58_02605 PF02685 Glucokinase MRB58_02625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_02625 PF03466 LysR substrate binding domain MRB58_02635 PF13186 Iron-sulfur cluster-binding domain MRB58_02635 PF04055 Radical SAM superfamily MRB58_02640 PF04828 Glutathione-dependent formaldehyde-activating enzyme MRB58_02650 PF01370 NAD dependent epimerase/dehydratase family MRB58_02655 PF01810 LysE type translocator MRB58_02665 PF00171 Aldehyde dehydrogenase family MRB58_02680 PF00588 SpoU rRNA Methylase family MRB58_02685 PF00180 Isocitrate/isopropylmalate dehydrogenase MRB58_02705 PF17757 UvrB interaction domain MRB58_02705 PF00271 Helicase conserved C-terminal domain MRB58_02705 PF03461 TRCF domain MRB58_02705 PF00270 DEAD/DEAH box helicase MRB58_02705 PF02559 CarD-like/TRCF domain MRB58_02715 PF00270 DEAD/DEAH box helicase MRB58_02715 PF17191 RecG wedge domain MRB58_02715 PF00271 Helicase conserved C-terminal domain MRB58_02730 PF16363 GDP-mannose 4,6 dehydratase MRB58_02735 PF00497 Bacterial extracellular solute-binding proteins, family 3 MRB58_02740 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_02745 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_02770 PF16177 Acetyl-coenzyme A synthetase N-terminus MRB58_02770 PF00501 AMP-binding enzyme MRB58_02770 PF13193 AMP-binding enzyme C-terminal domain MRB58_02780 PF07690 Major Facilitator Superfamily MRB58_02790 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MRB58_02790 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_02795 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ MRB58_02800 PF01048 Phosphorylase superfamily MRB58_02810 PF01493 GXGXG motif MRB58_02810 PF01645 Conserved region in glutamate synthase MRB58_02810 PF04898 Glutamate synthase central domain MRB58_02810 PF00310 Glutamine amidotransferases class-II MRB58_02815 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_02825 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_02835 PF16326 ABC transporter C-terminal domain MRB58_02835 PF00005 ABC transporter MRB58_02850 PF00156 Phosphoribosyl transferase domain MRB58_02855 PF01048 Phosphorylase superfamily MRB58_02860 PF01416 tRNA pseudouridine synthase MRB58_02865 PF02911 Formyl transferase, C-terminal domain MRB58_02865 PF00551 Formyl transferase MRB58_02870 PF01327 Polypeptide deformylase MRB58_02875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_02880 PF01979 Amidohydrolase family MRB58_02880 PF00449 Urease alpha-subunit, N-terminal domain MRB58_02905 PF06233 Usg-like family MRB58_02910 PF03631 Virulence factor BrkB MRB58_02925 PF07995 Glucose / Sorbosone dehydrogenase MRB58_02930 PF01144 Coenzyme A transferase MRB58_02935 PF01144 Coenzyme A transferase MRB58_02940 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MRB58_02940 PF00378 Enoyl-CoA hydratase/isomerase MRB58_02940 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MRB58_02955 PF03466 LysR substrate binding domain MRB58_02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_02960 PF03601 Conserved hypothetical protein 698 MRB58_02970 PF01425 Amidase MRB58_02975 PF01425 Amidase MRB58_02985 PF00005 ABC transporter MRB58_02985 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_02990 PF02653 Branched-chain amino acid transport system / permease component MRB58_02995 PF02653 Branched-chain amino acid transport system / permease component MRB58_03000 PF13458 Periplasmic binding protein MRB58_03005 PF01145 SPFH domain / Band 7 family MRB58_03005 PF15975 Flotillin MRB58_03010 PF12792 CSS motif domain associated with EAL MRB58_03010 PF00563 EAL domain MRB58_03015 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_03030 PF00563 EAL domain MRB58_03030 PF00990 Diguanylate cyclase, GGDEF domain MRB58_03030 PF08447 PAS fold MRB58_03030 PF08448 PAS fold MRB58_03040 PF00392 Bacterial regulatory proteins, gntR family MRB58_03040 PF07729 FCD domain MRB58_03045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRB58_03050 PF00873 AcrB/AcrD/AcrF family MRB58_03055 PF00082 Subtilase family MRB58_03065 PF02321 Outer membrane efflux protein MRB58_03080 PF00150 Cellulase (glycosyl hydrolase family 5) MRB58_03080 PF00553 Cellulose binding domain MRB58_03090 PF03641 Possible lysine decarboxylase MRB58_03095 PF01209 ubiE/COQ5 methyltransferase family MRB58_03100 PF01406 tRNA synthetases class I (C) catalytic domain MRB58_03110 PF01679 Proteolipid membrane potential modulator MRB58_03115 PF00072 Response regulator receiver domain MRB58_03115 PF00158 Sigma-54 interaction domain MRB58_03115 PF02954 Bacterial regulatory protein, Fis family MRB58_03120 PF00512 His Kinase A (phospho-acceptor) domain MRB58_03120 PF00989 PAS fold MRB58_03120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_03125 PF01207 Dihydrouridine synthase (Dus) MRB58_03130 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MRB58_03130 PF02542 YgbB family MRB58_03135 PF18146 Damage-inducible protein CinA KH domain MRB58_03135 PF02464 Competence-damaged protein MRB58_03135 PF00994 Probable molybdopterin binding domain MRB58_03150 PF00348 Polyprenyl synthetase MRB58_03165 PF01638 HxlR-like helix-turn-helix MRB58_03175 PF02779 Transketolase, pyrimidine binding domain MRB58_03175 PF02780 Transketolase, C-terminal domain MRB58_03175 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MRB58_03185 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_03185 PF00107 Zinc-binding dehydrogenase MRB58_03190 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase MRB58_03205 PF00403 Heavy-metal-associated domain MRB58_03210 PF13411 MerR HTH family regulatory protein MRB58_03215 PF01979 Amidohydrolase family MRB58_03220 PF01177 Asp/Glu/Hydantoin racemase MRB58_03235 PF01380 SIS domain MRB58_03240 PF00455 DeoR C terminal sensor domain MRB58_03240 PF08220 DeoR-like helix-turn-helix domain MRB58_03245 PF13416 Bacterial extracellular solute-binding protein MRB58_03250 PF08402 TOBE domain MRB58_03250 PF00005 ABC transporter MRB58_03255 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_03260 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_03270 PF01979 Amidohydrolase family MRB58_03290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_03295 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_03300 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_03300 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_03305 PF00005 ABC transporter MRB58_03305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_03310 PF03466 LysR substrate binding domain MRB58_03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_03315 PF00848 Ring hydroxylating alpha subunit (catalytic domain) MRB58_03315 PF00355 Rieske [2Fe-2S] domain MRB58_03320 PF01053 Cys/Met metabolism PLP-dependent enzyme MRB58_03325 PF04324 BFD-like [2Fe-2S] binding domain MRB58_03325 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_03330 PF01266 FAD dependent oxidoreductase MRB58_03335 PF01266 FAD dependent oxidoreductase MRB58_03335 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MRB58_03355 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_03360 PF00005 ABC transporter MRB58_03360 PF08402 TOBE domain MRB58_03365 PF12849 PBP superfamily domain MRB58_03380 PF00034 Cytochrome c MRB58_03390 PF13247 4Fe-4S dicluster domain MRB58_03395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MRB58_03395 PF00384 Molybdopterin oxidoreductase MRB58_03395 PF01568 Molydopterin dinucleotide binding domain MRB58_03430 PF10609 NUBPL iron-transfer P-loop NTPase MRB58_03445 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_03445 PF14759 Reductase C-terminal MRB58_03455 PF00743 Flavin-binding monooxygenase-like MRB58_03470 PF13607 Succinyl-CoA ligase like flavodoxin domain MRB58_03470 PF13380 CoA binding domain MRB58_03475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MRB58_03475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MRB58_03475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MRB58_03475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MRB58_03485 PF07690 Major Facilitator Superfamily MRB58_03500 PF00117 Glutamine amidotransferase class-I MRB58_03500 PF06418 CTP synthase N-terminus MRB58_03505 PF02386 Cation transport protein MRB58_03510 PF01546 Peptidase family M20/M25/M40 MRB58_03510 PF07687 Peptidase dimerisation domain MRB58_03515 PF01425 Amidase MRB58_03530 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_03530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRB58_03540 PF02092 Glycyl-tRNA synthetase beta subunit MRB58_03540 PF05746 DALR anticodon binding domain MRB58_03565 PF02789 Cytosol aminopeptidase family, N-terminal domain MRB58_03565 PF00883 Cytosol aminopeptidase family, catalytic domain MRB58_03585 PF09312 SurA N-terminal domain MRB58_03585 PF00639 PPIC-type PPIASE domain MRB58_03590 PF00398 Ribosomal RNA adenine dimethylase MRB58_03600 PF04997 RNA polymerase Rpb1, domain 1 MRB58_03600 PF00623 RNA polymerase Rpb1, domain 2 MRB58_03600 PF05000 RNA polymerase Rpb1, domain 4 MRB58_03600 PF04998 RNA polymerase Rpb1, domain 5 MRB58_03600 PF04983 RNA polymerase Rpb1, domain 3 MRB58_03605 PF04563 RNA polymerase beta subunit MRB58_03605 PF04565 RNA polymerase Rpb2, domain 3 MRB58_03605 PF04560 RNA polymerase Rpb2, domain 7 MRB58_03605 PF00562 RNA polymerase Rpb2, domain 6 MRB58_03605 PF10385 RNA polymerase beta subunit external 1 domain MRB58_03605 PF04561 RNA polymerase Rpb2, domain 2 MRB58_03610 PF00542 Ribosomal protein L7/L12 C-terminal domain MRB58_03610 PF16320 Ribosomal protein L7/L12 dimerisation domain MRB58_03615 PF00466 Ribosomal protein L10 MRB58_03625 PF00687 Ribosomal protein L1p/L10e family MRB58_03630 PF00298 Ribosomal protein L11, RNA binding domain MRB58_03630 PF03946 Ribosomal protein L11, N-terminal domain MRB58_03635 PF02357 Transcription termination factor nusG MRB58_03635 PF00467 KOW motif MRB58_03640 PF00584 SecE/Sec61-gamma subunits of protein translocation complex MRB58_03650 PF00149 Calcineurin-like phosphoesterase MRB58_03665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_03670 PF01425 Amidase MRB58_03680 PF00664 ABC transporter transmembrane region MRB58_03680 PF00005 ABC transporter MRB58_03695 PF00672 HAMP domain MRB58_03695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_03695 PF00512 His Kinase A (phospho-acceptor) domain MRB58_03700 PF00486 Transcriptional regulatory protein, C terminal MRB58_03700 PF00072 Response regulator receiver domain MRB58_03715 PF00005 ABC transporter MRB58_03720 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_03720 PF00005 ABC transporter MRB58_03730 PF02653 Branched-chain amino acid transport system / permease component MRB58_03740 PF00392 Bacterial regulatory proteins, gntR family MRB58_03740 PF07702 UTRA domain MRB58_03745 PF00682 HMGL-like MRB58_03750 PF13188 PAS domain MRB58_03750 PF03707 Bacterial signalling protein N terminal repeat MRB58_03750 PF00990 Diguanylate cyclase, GGDEF domain MRB58_03750 PF00563 EAL domain MRB58_03760 PF01739 CheR methyltransferase, SAM binding domain MRB58_03760 PF03705 CheR methyltransferase, all-alpha domain MRB58_03760 PF08448 PAS fold MRB58_03760 PF01339 CheB methylesterase MRB58_03770 PF01063 Amino-transferase class IV MRB58_03775 PF06610 L-alanine exporter MRB58_03790 PF05025 RbsD / FucU transport protein family MRB58_03800 PF00005 ABC transporter MRB58_03805 PF02653 Branched-chain amino acid transport system / permease component MRB58_03815 PF00072 Response regulator receiver domain MRB58_03820 PF00512 His Kinase A (phospho-acceptor) domain MRB58_03820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_03830 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MRB58_03835 PF00510 Cytochrome c oxidase subunit III MRB58_03840 PF00115 Cytochrome C and Quinol oxidase polypeptide I MRB58_03845 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MRB58_03845 PF06481 COX Aromatic Rich Motif MRB58_03850 PF07690 Major Facilitator Superfamily MRB58_03850 PF00083 Sugar (and other) transporter MRB58_03855 PF08548 Peptidase M10 serralysin C terminal MRB58_03855 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) MRB58_03855 PF00413 Matrixin MRB58_03865 PF00701 Dihydrodipicolinate synthetase family MRB58_03870 PF02615 Malate/L-lactate dehydrogenase MRB58_03885 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_03895 PF05544 Proline racemase MRB58_03900 PF02569 Pantoate-beta-alanine ligase MRB58_03905 PF09278 MerR, DNA binding MRB58_03905 PF00376 MerR family regulatory protein MRB58_03910 PF04945 YHS domain MRB58_03940 PF13533 Biotin-lipoyl like MRB58_03960 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_03960 PF01968 Hydantoinase/oxoprolinase MRB58_03965 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_03975 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_03975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_03980 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_03985 PF03466 LysR substrate binding domain MRB58_03985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_03995 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_04005 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_04010 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_04015 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_04020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MRB58_04020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MRB58_04025 PF06314 Acetoacetate decarboxylase (ADC) MRB58_04035 PF09084 NMT1/THI5 like MRB58_04040 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_04045 PF00005 ABC transporter MRB58_04065 PF02653 Branched-chain amino acid transport system / permease component MRB58_04070 PF02653 Branched-chain amino acid transport system / permease component MRB58_04075 PF00005 ABC transporter MRB58_04075 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_04080 PF00005 ABC transporter MRB58_04085 PF08386 TAP-like protein MRB58_04085 PF00561 alpha/beta hydrolase fold MRB58_04100 PF00330 Aconitase family (aconitate hydratase) MRB58_04120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_04130 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_04140 PF00501 AMP-binding enzyme MRB58_04140 PF13193 AMP-binding enzyme C-terminal domain MRB58_04150 PF17969 L,D-transpeptidase C-terminal domain MRB58_04150 PF03734 L,D-transpeptidase catalytic domain MRB58_04165 PF00465 Iron-containing alcohol dehydrogenase MRB58_04170 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_04175 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_04185 PF00005 ABC transporter MRB58_04185 PF17912 MalK OB fold domain MRB58_04190 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRB58_04190 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MRB58_04195 PF01565 FAD binding domain MRB58_04195 PF02913 FAD linked oxidases, C-terminal domain MRB58_04200 PF00356 Bacterial regulatory proteins, lacI family MRB58_04210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRB58_04210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRB58_04215 PF02515 CoA-transferase family III MRB58_04220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_04220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_04220 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_04230 PF03466 LysR substrate binding domain MRB58_04230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_04235 PF00849 RNA pseudouridylate synthase MRB58_04235 PF01479 S4 domain MRB58_04245 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MRB58_04255 PF12002 MgsA AAA+ ATPase C terminal MRB58_04255 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_04255 PF16193 AAA C-terminal domain MRB58_04260 PF13180 PDZ domain MRB58_04260 PF17820 PDZ domain MRB58_04265 PF01131 DNA topoisomerase MRB58_04265 PF01751 Toprim domain MRB58_04265 PF13368 Topoisomerase C-terminal repeat MRB58_04265 PF01396 Topoisomerase DNA binding C4 zinc finger MRB58_04275 PF04828 Glutathione-dependent formaldehyde-activating enzyme MRB58_04280 PF08461 Ribonuclease R winged-helix domain MRB58_04280 PF17876 Cold shock domain MRB58_04280 PF08206 Ribonuclease B OB domain MRB58_04280 PF00773 RNB domain MRB58_04280 PF00575 S1 RNA binding domain MRB58_04300 PF07690 Major Facilitator Superfamily MRB58_04305 PF00471 Ribosomal protein L33 MRB58_04310 PF00072 Response regulator receiver domain MRB58_04320 PF11799 impB/mucB/samB family C-terminal domain MRB58_04320 PF00817 impB/mucB/samB family MRB58_04330 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MRB58_04330 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MRB58_04340 PF00034 Cytochrome c MRB58_04345 PF00756 Putative esterase MRB58_04355 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_04355 PF00107 Zinc-binding dehydrogenase MRB58_04380 PF13360 PQQ-like domain MRB58_04425 PF00005 ABC transporter MRB58_04445 PF00005 ABC transporter MRB58_04450 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit MRB58_04450 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region MRB58_04450 PF10531 SLBB domain MRB58_04455 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MRB58_04455 PF12838 4Fe-4S dicluster domain MRB58_04455 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MRB58_04455 PF00384 Molybdopterin oxidoreductase MRB58_04455 PF01568 Molydopterin dinucleotide binding domain MRB58_04470 PF00202 Aminotransferase class-III MRB58_04475 PF01063 Amino-transferase class IV MRB58_04480 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_04480 PF01968 Hydantoinase/oxoprolinase MRB58_04500 PF00202 Aminotransferase class-III MRB58_04515 PF01968 Hydantoinase/oxoprolinase MRB58_04515 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_04525 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_04525 PF00005 ABC transporter MRB58_04530 PF00005 ABC transporter MRB58_04535 PF02653 Branched-chain amino acid transport system / permease component MRB58_04545 PF03746 LamB/YcsF family MRB58_04555 PF00289 Biotin carboxylase, N-terminal domain MRB58_04555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRB58_04555 PF02785 Biotin carboxylase C-terminal domain MRB58_04565 PF02626 Carboxyltransferase domain, subdomain A and B MRB58_04570 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_04585 PF00334 Nucleoside diphosphate kinase MRB58_04595 PF01270 Glycosyl hydrolases family 8 MRB58_04600 PF00005 ABC transporter MRB58_04600 PF12848 ABC transporter MRB58_04615 PF01522 Polysaccharide deacetylase MRB58_04625 PF01642 Methylmalonyl-CoA mutase MRB58_04630 PF02310 B12 binding domain MRB58_04630 PF01642 Methylmalonyl-CoA mutase MRB58_04635 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MRB58_04640 PF08818 Domain of unknown function (DU1801) MRB58_04645 PF00920 Dehydratase family MRB58_04660 PF12792 CSS motif domain associated with EAL MRB58_04660 PF00563 EAL domain MRB58_04665 PF00005 ABC transporter MRB58_04665 PF00664 ABC transporter transmembrane region MRB58_04675 PF01494 FAD binding domain MRB58_04695 PF00043 Glutathione S-transferase, C-terminal domain MRB58_04695 PF02798 Glutathione S-transferase, N-terminal domain MRB58_04700 PF00005 ABC transporter MRB58_04700 PF08402 TOBE domain MRB58_04710 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_04725 PF00155 Aminotransferase class I and II MRB58_04730 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_04735 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_04740 PF01053 Cys/Met metabolism PLP-dependent enzyme MRB58_04745 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRB58_04745 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRB58_04775 PF07733 Bacterial DNA polymerase III alpha NTPase domain MRB58_04775 PF01336 OB-fold nucleic acid binding domain MRB58_04775 PF02811 PHP domain MRB58_04775 PF14579 Helix-hairpin-helix motif MRB58_04775 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MRB58_04795 PF02142 MGS-like domain MRB58_04795 PF01808 AICARFT/IMPCHase bienzyme MRB58_04805 PF01029 NusB family MRB58_04805 PF01189 16S rRNA methyltransferase RsmB/F MRB58_04810 PF01435 Peptidase family M48 MRB58_04820 PF12627 Probable RNA and SrmB- binding site of polymerase A MRB58_04820 PF13735 tRNA nucleotidyltransferase domain 2 putative MRB58_04820 PF01743 Poly A polymerase head domain MRB58_04830 PF00293 NUDIX domain MRB58_04840 PF07726 ATPase family associated with various cellular activities (AAA) MRB58_04840 PF17863 AAA lid domain MRB58_04890 PF03600 Citrate transporter MRB58_04890 PF02080 TrkA-C domain MRB58_04900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRB58_04910 PF05199 GMC oxidoreductase MRB58_04910 PF00732 GMC oxidoreductase MRB58_04920 PF12697 Alpha/beta hydrolase family MRB58_04925 PF00378 Enoyl-CoA hydratase/isomerase MRB58_04930 PF02515 CoA-transferase family III MRB58_04935 PF01425 Amidase MRB58_04940 PF08402 TOBE domain MRB58_04940 PF00005 ABC transporter MRB58_04950 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_04990 PF17863 AAA lid domain MRB58_04990 PF07726 ATPase family associated with various cellular activities (AAA) MRB58_04995 PF01037 Lrp/AsnC ligand binding domain MRB58_05000 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_05015 PF03209 PUCC protein MRB58_05020 PF00155 Aminotransferase class I and II MRB58_05025 PF03330 Lytic transglycolase MRB58_05040 PF00072 Response regulator receiver domain MRB58_05065 PF13581 Histidine kinase-like ATPase domain MRB58_05065 PF13426 PAS domain MRB58_05065 PF07536 HWE histidine kinase MRB58_05075 PF00166 Chaperonin 10 Kd subunit MRB58_05080 PF00118 TCP-1/cpn60 chaperonin family MRB58_05085 PF01209 ubiE/COQ5 methyltransferase family MRB58_05095 PF01196 Ribosomal protein L17 MRB58_05100 PF01000 RNA polymerase Rpb3/RpoA insert domain MRB58_05100 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MRB58_05100 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MRB58_05105 PF00411 Ribosomal protein S11 MRB58_05110 PF00416 Ribosomal protein S13/S18 MRB58_05120 PF00344 SecY translocase MRB58_05125 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MRB58_05130 PF00327 Ribosomal protein L30p/L7e MRB58_05135 PF03719 Ribosomal protein S5, C-terminal domain MRB58_05135 PF00333 Ribosomal protein S5, N-terminal domain MRB58_05140 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MRB58_05145 PF00347 Ribosomal protein L6 MRB58_05150 PF00410 Ribosomal protein S8 MRB58_05155 PF00253 Ribosomal protein S14p/S29e MRB58_05160 PF00281 Ribosomal protein L5 MRB58_05160 PF00673 ribosomal L5P family C-terminus MRB58_05165 PF00467 KOW motif MRB58_05165 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MRB58_05170 PF00238 Ribosomal protein L14p/L23e MRB58_05180 PF00831 Ribosomal L29 protein MRB58_05185 PF00252 Ribosomal protein L16p/L10e MRB58_05190 PF00189 Ribosomal protein S3, C-terminal domain MRB58_05190 PF07650 KH domain MRB58_05195 PF00237 Ribosomal protein L22p/L17e MRB58_05200 PF00203 Ribosomal protein S19 MRB58_05205 PF00181 Ribosomal Proteins L2, RNA binding domain MRB58_05205 PF03947 Ribosomal Proteins L2, C-terminal domain MRB58_05210 PF00276 Ribosomal protein L23 MRB58_05215 PF00573 Ribosomal protein L4/L1 family MRB58_05220 PF00297 Ribosomal protein L3 MRB58_05225 PF00338 Ribosomal protein S10p/S20e MRB58_05230 PF04002 RadC-like JAB domain MRB58_05235 PF03144 Elongation factor Tu domain 2 MRB58_05235 PF03143 Elongation factor Tu C-terminal domain MRB58_05235 PF00009 Elongation factor Tu GTP binding domain MRB58_05240 PF03144 Elongation factor Tu domain 2 MRB58_05240 PF00009 Elongation factor Tu GTP binding domain MRB58_05240 PF03764 Elongation factor G, domain IV MRB58_05240 PF14492 Elongation Factor G, domain II MRB58_05240 PF00679 Elongation factor G C-terminus MRB58_05250 PF00177 Ribosomal protein S7p/S5e MRB58_05255 PF00164 Ribosomal protein S12/S23 MRB58_05270 PF01321 Creatinase/Prolidase N-terminal domain MRB58_05270 PF00557 Metallopeptidase family M24 MRB58_05275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_05275 PF03466 LysR substrate binding domain MRB58_05280 PF00701 Dihydrodipicolinate synthetase family MRB58_05285 PF00106 short chain dehydrogenase MRB58_05290 PF01425 Amidase MRB58_05300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_05305 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_05310 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_05310 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_05315 PF00005 ABC transporter MRB58_05315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_05320 PF00005 ABC transporter MRB58_05320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_05325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRB58_05325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MRB58_05330 PF02653 Branched-chain amino acid transport system / permease component MRB58_05335 PF13407 Periplasmic binding protein domain MRB58_05340 PF00005 ABC transporter MRB58_05355 PF00756 Putative esterase MRB58_05360 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term MRB58_05360 PF12833 Helix-turn-helix domain MRB58_05365 PF01497 Periplasmic binding protein MRB58_05370 PF01032 FecCD transport family MRB58_05375 PF01032 FecCD transport family MRB58_05380 PF00005 ABC transporter MRB58_05390 PF00583 Acetyltransferase (GNAT) family MRB58_05405 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_05410 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_05420 PF00392 Bacterial regulatory proteins, gntR family MRB58_05420 PF07729 FCD domain MRB58_05425 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_05425 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_05430 PF04107 Glutamate-cysteine ligase family 2(GCS2) MRB58_05435 PF04452 RNA methyltransferase MRB58_05440 PF02601 Exonuclease VII, large subunit MRB58_05440 PF13742 OB-fold nucleic acid binding domain MRB58_05445 PF10145 Phage-related minor tail protein MRB58_05445 PF01551 Peptidase family M23 MRB58_05445 PF01464 Transglycosylase SLT domain MRB58_05450 PF00476 DNA polymerase family A MRB58_05450 PF01612 3'-5' exonuclease MRB58_05465 PF00682 HMGL-like MRB58_05465 PF08502 LeuA allosteric (dimerisation) domain MRB58_05480 PF08331 Domain of unknown function (DUF1730) MRB58_05485 PF00043 Glutathione S-transferase, C-terminal domain MRB58_05485 PF13417 Glutathione S-transferase, N-terminal domain MRB58_05490 PF02673 Bacitracin resistance protein BacA MRB58_05520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_05520 PF03466 LysR substrate binding domain MRB58_05530 PF06532 Negative regulator of sigma F MRB58_05535 PF04542 Sigma-70 region 2 MRB58_05535 PF04545 Sigma-70, region 4 MRB58_05540 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_05545 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_05545 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_05550 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_05555 PF01699 Sodium/calcium exchanger protein MRB58_05560 PF13181 Tetratricopeptide repeat MRB58_05570 PF00180 Isocitrate/isopropylmalate dehydrogenase MRB58_05580 PF00596 Class II Aldolase and Adducin N-terminal domain MRB58_05585 PF17042 Nucleotide-binding C-terminal domain MRB58_05585 PF07005 Sugar-binding N-terminal domain MRB58_05590 PF00248 Aldo/keto reductase family MRB58_05615 PF00180 Isocitrate/isopropylmalate dehydrogenase MRB58_05620 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MRB58_05620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MRB58_05625 PF00392 Bacterial regulatory proteins, gntR family MRB58_05625 PF07729 FCD domain MRB58_05630 PF01220 Dehydroquinase class II MRB58_05640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_05640 PF00005 ABC transporter MRB58_05645 PF01968 Hydantoinase/oxoprolinase MRB58_05645 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_05655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_05660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_05660 PF03466 LysR substrate binding domain MRB58_05665 PF02538 Hydantoinase B/oxoprolinase MRB58_05670 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_05670 PF01968 Hydantoinase/oxoprolinase MRB58_05675 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_05680 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_05680 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_05685 PF01152 Bacterial-like globin MRB58_05705 PF03705 CheR methyltransferase, all-alpha domain MRB58_05705 PF01739 CheR methyltransferase, SAM binding domain MRB58_05710 PF01339 CheB methylesterase MRB58_05710 PF00072 Response regulator receiver domain MRB58_05720 PF01627 Hpt domain MRB58_05720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_05720 PF02895 Signal transducing histidine kinase, homodimeric domain MRB58_05720 PF01584 CheW-like domain MRB58_05720 PF00072 Response regulator receiver domain MRB58_05755 PF00771 FHIPEP family MRB58_05760 PF00990 Diguanylate cyclase, GGDEF domain MRB58_05760 PF00563 EAL domain MRB58_05760 PF03707 Bacterial signalling protein N terminal repeat MRB58_05770 PF00391 PEP-utilising enzyme, mobile domain MRB58_05770 PF02896 PEP-utilising enzyme, TIM barrel domain MRB58_05770 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MRB58_05780 PF08544 GHMP kinases C terminal MRB58_05790 PF00348 Polyprenyl synthetase MRB58_05805 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_05810 PF01411 tRNA synthetases class II (A) MRB58_05810 PF02272 DHHA1 domain MRB58_05810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MRB58_05815 PF00581 Rhodanese-like domain MRB58_05825 PF04055 Radical SAM superfamily MRB58_05845 PF02653 Branched-chain amino acid transport system / permease component MRB58_05850 PF02653 Branched-chain amino acid transport system / permease component MRB58_05855 PF00005 ABC transporter MRB58_05855 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_05860 PF00005 ABC transporter MRB58_05870 PF00795 Carbon-nitrogen hydrolase MRB58_05875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_05875 PF03466 LysR substrate binding domain MRB58_05880 PF01965 DJ-1/PfpI family MRB58_05895 PF03009 Glycerophosphoryl diester phosphodiesterase family MRB58_05900 PF00455 DeoR C terminal sensor domain MRB58_05900 PF08220 DeoR-like helix-turn-helix domain MRB58_05905 PF00005 ABC transporter MRB58_05905 PF17912 MalK OB fold domain MRB58_05910 PF13416 Bacterial extracellular solute-binding protein MRB58_05915 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_05920 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_05925 PF00224 Pyruvate kinase, barrel domain MRB58_05925 PF02887 Pyruvate kinase, alpha/beta domain MRB58_05935 PF00529 HlyD membrane-fusion protein of T1SS MRB58_05935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRB58_05950 PF00512 His Kinase A (phospho-acceptor) domain MRB58_05950 PF13188 PAS domain MRB58_05950 PF00989 PAS fold MRB58_05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_05955 PF00072 Response regulator receiver domain MRB58_05955 PF00990 Diguanylate cyclase, GGDEF domain MRB58_05960 PF00990 Diguanylate cyclase, GGDEF domain MRB58_05960 PF00072 Response regulator receiver domain MRB58_05965 PF01168 Alanine racemase, N-terminal domain MRB58_05965 PF14031 Putative serine dehydratase domain MRB58_05975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_05980 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_05985 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_05985 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_05990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_05990 PF00005 ABC transporter MRB58_05995 PF00005 ABC transporter MRB58_05995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_06000 PF00392 Bacterial regulatory proteins, gntR family MRB58_06000 PF07729 FCD domain MRB58_06010 PF04909 Amidohydrolase MRB58_06015 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_06025 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_06030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRB58_06030 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRB58_06035 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MRB58_06050 PF00005 ABC transporter MRB58_06055 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_06055 PF00005 ABC transporter MRB58_06065 PF02653 Branched-chain amino acid transport system / permease component MRB58_06070 PF13458 Periplasmic binding protein MRB58_06075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_06075 PF03466 LysR substrate binding domain MRB58_06090 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_06095 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_06105 PF00005 ABC transporter MRB58_06105 PF17912 MalK OB fold domain MRB58_06110 PF08402 TOBE domain MRB58_06110 PF00005 ABC transporter MRB58_06115 PF02734 DAK2 domain MRB58_06120 PF00381 PTS HPr component phosphorylation site MRB58_06120 PF03610 PTS system fructose IIA component MRB58_06120 PF00391 PEP-utilising enzyme, mobile domain MRB58_06120 PF05524 PEP-utilising enzyme, N-terminal MRB58_06125 PF00381 PTS HPr component phosphorylation site MRB58_06130 PF00391 PEP-utilising enzyme, mobile domain MRB58_06130 PF02896 PEP-utilising enzyme, TIM barrel domain MRB58_06130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MRB58_06130 PF05524 PEP-utilising enzyme, N-terminal MRB58_06130 PF00381 PTS HPr component phosphorylation site MRB58_06140 PF02733 Dak1 domain MRB58_06160 PF03069 Acetamidase/Formamidase family MRB58_06165 PF07687 Peptidase dimerisation domain MRB58_06165 PF01546 Peptidase family M20/M25/M40 MRB58_06170 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_06170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRB58_06175 PF07690 Major Facilitator Superfamily MRB58_06180 PF00920 Dehydratase family MRB58_06185 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_06195 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_06200 PF07729 FCD domain MRB58_06200 PF00392 Bacterial regulatory proteins, gntR family MRB58_06205 PF01070 FMN-dependent dehydrogenase MRB58_06210 PF03737 Aldolase/RraA MRB58_06215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_06215 PF01842 ACT domain MRB58_06215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_06225 PF03401 Tripartite tricarboxylate transporter family receptor MRB58_06235 PF01970 Tripartite tricarboxylate transporter TctA family MRB58_06240 PF00392 Bacterial regulatory proteins, gntR family MRB58_06240 PF07729 FCD domain MRB58_06255 PF03109 ABC1 family MRB58_06260 PF05128 Domain of unknown function (DUF697) MRB58_06265 PF04317 YcjX-like family, DUF463 MRB58_06290 PF13632 Glycosyl transferase family group 2 MRB58_06305 PF00534 Glycosyl transferases group 1 MRB58_06305 PF13439 Glycosyltransferase Family 4 MRB58_06315 PF01872 RibD C-terminal domain MRB58_06315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MRB58_06325 PF00925 GTP cyclohydrolase II MRB58_06335 PF02653 Branched-chain amino acid transport system / permease component MRB58_06340 PF00005 ABC transporter MRB58_06350 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_06350 PF00005 ABC transporter MRB58_06355 PF13458 Periplasmic binding protein MRB58_06365 PF00027 Cyclic nucleotide-binding domain MRB58_06365 PF13545 Crp-like helix-turn-helix domain MRB58_06370 PF03734 L,D-transpeptidase catalytic domain MRB58_06370 PF17969 L,D-transpeptidase C-terminal domain MRB58_06370 PF01476 LysM domain MRB58_06380 PF02608 ABC transporter substrate-binding protein PnrA-like MRB58_06395 PF00005 ABC transporter MRB58_06395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_06400 PF00005 ABC transporter MRB58_06400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_06410 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_06410 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_06415 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_06420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_06425 PF02633 Creatinine amidohydrolase MRB58_06440 PF00005 ABC transporter MRB58_06445 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_06450 PF07969 Amidohydrolase family MRB58_06460 PF02525 Flavodoxin-like fold MRB58_06470 PF00892 EamA-like transporter family MRB58_06475 PF00155 Aminotransferase class I and II MRB58_06485 PF00696 Amino acid kinase family MRB58_06485 PF13840 ACT domain MRB58_06485 PF01842 ACT domain MRB58_06490 PF05524 PEP-utilising enzyme, N-terminal MRB58_06490 PF00391 PEP-utilising enzyme, mobile domain MRB58_06490 PF02896 PEP-utilising enzyme, TIM barrel domain MRB58_06495 PF03462 PCRF domain MRB58_06495 PF00472 RF-1 domain MRB58_06500 PF17827 PrmC N-terminal domain MRB58_06500 PF05175 Methyltransferase small domain MRB58_06520 PF13439 Glycosyltransferase Family 4 MRB58_06520 PF00534 Glycosyl transferases group 1 MRB58_06535 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_06535 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_06540 PF00691 OmpA family MRB58_06545 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MRB58_06545 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRB58_06560 PF01738 Dienelactone hydrolase family MRB58_06565 PF02586 SOS response associated peptidase (SRAP) MRB58_06580 PF01571 Aminomethyltransferase folate-binding domain MRB58_06585 PF01966 HD domain MRB58_06615 PF00210 Ferritin-like domain MRB58_06625 PF07969 Amidohydrolase family MRB58_06630 PF06299 Protein of unknown function (DUF1045) MRB58_06640 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_06645 PF00005 ABC transporter MRB58_06650 PF00005 ABC transporter MRB58_06665 PF06007 Phosphonate metabolism protein PhnJ MRB58_06675 PF05861 Bacterial phosphonate metabolism protein (PhnI) MRB58_06680 PF05845 Bacterial phosphonate metabolism protein (PhnH) MRB58_06685 PF06754 Phosphonate metabolism protein PhnG MRB58_06690 PF01027 Inhibitor of apoptosis-promoting Bax1 MRB58_06710 PF02570 Precorrin-8X methylmutase MRB58_06715 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRB58_06720 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRB58_06725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRB58_06730 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_06745 PF07969 Amidohydrolase family MRB58_06760 PF00005 ABC transporter MRB58_06765 PF02653 Branched-chain amino acid transport system / permease component MRB58_06770 PF02653 Branched-chain amino acid transport system / permease component MRB58_06800 PF00027 Cyclic nucleotide-binding domain MRB58_06800 PF00005 ABC transporter MRB58_06815 PF00392 Bacterial regulatory proteins, gntR family MRB58_06815 PF07729 FCD domain MRB58_06820 PF16868 NMT1-like family MRB58_06825 PF00294 pfkB family carbohydrate kinase MRB58_06835 PF01966 HD domain MRB58_06835 PF00072 Response regulator receiver domain MRB58_06840 PF07689 KaiB domain MRB58_06845 PF06745 KaiC MRB58_06850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_06850 PF08448 PAS fold MRB58_06850 PF13188 PAS domain MRB58_06850 PF00072 Response regulator receiver domain MRB58_06850 PF00512 His Kinase A (phospho-acceptor) domain MRB58_06860 PF03466 LysR substrate binding domain MRB58_06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_06865 PF03466 LysR substrate binding domain MRB58_06865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_06870 PF04143 Sulphur transport MRB58_06880 PF00753 Metallo-beta-lactamase superfamily MRB58_06895 PF00448 SRP54-type protein, GTPase domain MRB58_06895 PF02881 SRP54-type protein, helical bundle domain MRB58_06895 PF02978 Signal peptide binding domain MRB58_06905 PF00886 Ribosomal protein S16 MRB58_06910 PF05239 PRC-barrel domain MRB58_06910 PF01782 RimM N-terminal domain MRB58_06915 PF01746 tRNA (Guanine-1)-methyltransferase MRB58_06930 PF13393 Histidyl-tRNA synthetase MRB58_06930 PF03129 Anticodon binding domain MRB58_06935 PF13393 Histidyl-tRNA synthetase MRB58_06940 PF01634 ATP phosphoribosyltransferase MRB58_06970 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) MRB58_06980 PF00224 Pyruvate kinase, barrel domain MRB58_06980 PF02887 Pyruvate kinase, alpha/beta domain MRB58_06990 PF02626 Carboxyltransferase domain, subdomain A and B MRB58_07000 PF03746 LamB/YcsF family MRB58_07005 PF00202 Aminotransferase class-III MRB58_07010 PF00512 His Kinase A (phospho-acceptor) domain MRB58_07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_07020 PF12804 MobA-like NTP transferase domain MRB58_07030 PF13361 UvrD-like helicase C-terminal domain MRB58_07030 PF12705 PD-(D/E)XK nuclease superfamily MRB58_07030 PF00580 UvrD/REP helicase N-terminal domain MRB58_07035 PF00085 Thioredoxin MRB58_07040 PF01025 GrpE MRB58_07050 PF01467 Cytidylyltransferase-like MRB58_07050 PF00294 pfkB family carbohydrate kinase MRB58_07060 PF02391 MoaE protein MRB58_07070 PF01066 CDP-alcohol phosphatidyltransferase MRB58_07080 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_07085 PF00005 ABC transporter MRB58_07095 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding MRB58_07095 PF12169 DNA polymerase III subunits gamma and tau domain III MRB58_07095 PF12170 DNA polymerase III tau subunit V interacting with alpha MRB58_07100 PF02575 YbaB/EbfC DNA-binding family MRB58_07105 PF02132 RecR protein MRB58_07105 PF13662 Toprim domain MRB58_07115 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_07115 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_07130 PF07724 AAA domain (Cdc48 subfamily) MRB58_07130 PF10431 C-terminal, D2-small domain, of ClpB protein MRB58_07130 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_07135 PF04239 Protein of unknown function (DUF421) MRB58_07140 PF00227 Proteasome subunit MRB58_07145 PF00398 Ribosomal RNA adenine dimethylase MRB58_07150 PF00226 DnaJ domain MRB58_07150 PF01556 DnaJ C terminal domain MRB58_07150 PF00684 DnaJ central domain MRB58_07155 PF00012 Hsp70 protein MRB58_07160 PF04264 YceI-like domain MRB58_07165 PF04264 YceI-like domain MRB58_07170 PF13532 2OG-Fe(II) oxygenase superfamily MRB58_07185 PF03070 TENA/THI-4/PQQC family MRB58_07200 PF01053 Cys/Met metabolism PLP-dependent enzyme MRB58_07205 PF02386 Cation transport protein MRB58_07210 PF00999 Sodium/hydrogen exchanger family MRB58_07210 PF02254 TrkA-N domain MRB58_07215 PF00156 Phosphoribosyl transferase domain MRB58_07220 PF01979 Amidohydrolase family MRB58_07225 PF01180 Dihydroorotate dehydrogenase MRB58_07235 PF00850 Histone deacetylase domain MRB58_07240 PF13581 Histidine kinase-like ATPase domain MRB58_07240 PF13426 PAS domain MRB58_07240 PF07568 Histidine kinase MRB58_07260 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain MRB58_07260 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain MRB58_07270 PF05853 beta-keto acid cleavage enzyme MRB58_07280 PF03552 Cellulose synthase MRB58_07280 PF00535 Glycosyl transferase family 2 MRB58_07280 PF07238 PilZ domain MRB58_07295 PF02567 Phenazine biosynthesis-like protein MRB58_07310 PF01541 GIY-YIG catalytic domain MRB58_07310 PF02151 UvrB/uvrC motif MRB58_07310 PF08459 UvrC Helix-hairpin-helix N-terminal MRB58_07320 PF00106 short chain dehydrogenase MRB58_07340 PF02872 5'-nucleotidase, C-terminal domain MRB58_07340 PF00149 Calcineurin-like phosphoesterase MRB58_07345 PF02872 5'-nucleotidase, C-terminal domain MRB58_07345 PF00149 Calcineurin-like phosphoesterase MRB58_07350 PF01921 tRNA synthetases class I (K) MRB58_07360 PF04379 ApaG domain MRB58_07370 PF05199 GMC oxidoreductase MRB58_07370 PF00732 GMC oxidoreductase MRB58_07375 PF00171 Aldehyde dehydrogenase family MRB58_07380 PF00884 Sulfatase MRB58_07380 PF12411 Choline sulfatase enzyme C terminal MRB58_07385 PF13977 BetI-type transcriptional repressor, C-terminal MRB58_07385 PF00440 Bacterial regulatory proteins, tetR family MRB58_07390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MRB58_07395 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_07400 PF00571 CBS domain MRB58_07400 PF00005 ABC transporter MRB58_07405 PF00271 Helicase conserved C-terminal domain MRB58_07405 PF00270 DEAD/DEAH box helicase MRB58_07410 PF00313 'Cold-shock' DNA-binding domain MRB58_07415 PF00701 Dihydrodipicolinate synthetase family MRB58_07425 PF02397 Bacterial sugar transferase MRB58_07435 PF00535 Glycosyl transferase family 2 MRB58_07460 PF01370 NAD dependent epimerase/dehydratase family MRB58_07475 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MRB58_07475 PF00753 Metallo-beta-lactamase superfamily MRB58_07475 PF10996 Beta-Casp domain MRB58_07485 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRB58_07515 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRB58_07525 PF13085 2Fe-2S iron-sulfur cluster binding domain MRB58_07525 PF13237 4Fe-4S dicluster domain MRB58_07535 PF02899 Phage integrase, N-terminal SAM-like domain MRB58_07535 PF00589 Phage integrase family MRB58_07540 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_07540 PF01799 [2Fe-2S] binding domain MRB58_07545 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_07545 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_07550 PF03450 CO dehydrogenase flavoprotein C-terminal domain MRB58_07550 PF00941 FAD binding domain in molybdopterin dehydrogenase MRB58_07555 PF02954 Bacterial regulatory protein, Fis family MRB58_07555 PF00072 Response regulator receiver domain MRB58_07555 PF00158 Sigma-54 interaction domain MRB58_07570 PF00392 Bacterial regulatory proteins, gntR family MRB58_07570 PF07729 FCD domain MRB58_07575 PF01546 Peptidase family M20/M25/M40 MRB58_07585 PF00722 Glycosyl hydrolases family 16 MRB58_07605 PF14667 Polysaccharide biosynthesis C-terminal domain MRB58_07605 PF01943 Polysaccharide biosynthesis protein MRB58_07610 PF00722 Glycosyl hydrolases family 16 MRB58_07630 PF02021 Uncharacterised protein family UPF0102 MRB58_07640 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MRB58_07640 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MRB58_07650 PF14850 DNA-binding domain of Proline dehydrogenase MRB58_07650 PF01619 Proline dehydrogenase MRB58_07650 PF00171 Aldehyde dehydrogenase family MRB58_07650 PF18327 Proline utilization A proline dehydrogenase N-terminal domain MRB58_07655 PF07943 Penicillin-binding protein 5, C-terminal domain MRB58_07655 PF00768 D-alanyl-D-alanine carboxypeptidase MRB58_07660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_07660 PF03466 LysR substrate binding domain MRB58_07670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRB58_07670 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_07690 PF00462 Glutaredoxin MRB58_07700 PF07021 Methionine biosynthesis protein MetW MRB58_07700 PF00561 alpha/beta hydrolase fold MRB58_07705 PF00561 alpha/beta hydrolase fold MRB58_07715 PF00155 Aminotransferase class I and II MRB58_07720 PF02153 Prephenate dehydrogenase MRB58_07750 PF00005 ABC transporter MRB58_07760 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MRB58_07760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MRB58_07770 PF14698 Argininosuccinate lyase C-terminal MRB58_07770 PF00206 Lyase MRB58_07775 PF08534 Redoxin MRB58_07785 PF07885 Ion channel MRB58_07790 PF00207 Alpha-2-macroglobulin family MRB58_07790 PF01835 MG2 domain MRB58_07790 PF17962 Bacterial macroglobulin domain 6 MRB58_07790 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain MRB58_07790 PF11974 Bacterial alpha-2-macroglobulin MG3 domain MRB58_07790 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain MRB58_07790 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain MRB58_07790 PF07703 Alpha-2-macroglobulin bait region domain MRB58_07795 PF00912 Transglycosylase MRB58_07795 PF06832 Penicillin-Binding Protein C-terminus Family MRB58_07795 PF00905 Penicillin binding protein transpeptidase domain MRB58_07800 PF01810 LysE type translocator MRB58_07820 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_07820 PF00107 Zinc-binding dehydrogenase MRB58_07820 PF14765 Polyketide synthase dehydratase MRB58_07820 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_07820 PF00550 Phosphopantetheine attachment site MRB58_07820 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_07820 PF00698 Acyl transferase domain MRB58_07820 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_07820 PF08659 KR domain MRB58_07830 PF04279 Intracellular septation protein A MRB58_07835 PF00005 ABC transporter MRB58_07840 PF04963 Sigma-54 factor, core binding domain MRB58_07840 PF00309 Sigma-54 factor, Activator interacting domain (AID) MRB58_07840 PF04552 Sigma-54, DNA binding domain MRB58_07845 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus MRB58_07845 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MRB58_07850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MRB58_07855 PF00330 Aconitase family (aconitate hydratase) MRB58_07860 PF01593 Flavin containing amine oxidoreductase MRB58_07870 PF00348 Polyprenyl synthetase MRB58_07875 PF00912 Transglycosylase MRB58_07880 PF01783 Ribosomal L32p protein family MRB58_07895 PF02803 Thiolase, C-terminal domain MRB58_07895 PF00108 Thiolase, N-terminal domain MRB58_07910 PF01699 Sodium/calcium exchanger protein MRB58_07920 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRB58_07920 PF00753 Metallo-beta-lactamase superfamily MRB58_07925 PF08241 Methyltransferase domain MRB58_07940 PF03009 Glycerophosphoryl diester phosphodiesterase family MRB58_07950 PF01230 HIT domain MRB58_07970 PF02028 BCCT, betaine/carnitine/choline family transporter MRB58_07980 PF02617 ATP-dependent Clp protease adaptor protein ClpS MRB58_07990 PF07943 Penicillin-binding protein 5, C-terminal domain MRB58_07990 PF00768 D-alanyl-D-alanine carboxypeptidase MRB58_08005 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_08010 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_08020 PF08402 TOBE domain MRB58_08020 PF00005 ABC transporter MRB58_08035 PF10431 C-terminal, D2-small domain, of ClpB protein MRB58_08035 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_08035 PF07724 AAA domain (Cdc48 subfamily) MRB58_08035 PF17871 AAA lid domain MRB58_08035 PF02861 Clp amino terminal domain, pathogenicity island component MRB58_08045 PF01551 Peptidase family M23 MRB58_08045 PF04225 Opacity-associated protein A LysM-like domain MRB58_08090 PF02310 B12 binding domain MRB58_08090 PF13282 Domain of unknown function (DUF4070) MRB58_08090 PF04055 Radical SAM superfamily MRB58_08095 PF02566 OsmC-like protein MRB58_08100 PF14537 Cytochrome c3 MRB58_08100 PF00890 FAD binding domain MRB58_08105 PF00857 Isochorismatase family MRB58_08110 PF01968 Hydantoinase/oxoprolinase MRB58_08110 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_08115 PF02538 Hydantoinase B/oxoprolinase MRB58_08125 PF00005 ABC transporter MRB58_08130 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_08130 PF00005 ABC transporter MRB58_08135 PF02653 Branched-chain amino acid transport system / permease component MRB58_08135 PF11862 Domain of unknown function (DUF3382) MRB58_08140 PF02653 Branched-chain amino acid transport system / permease component MRB58_08145 PF13458 Periplasmic binding protein MRB58_08150 PF07702 UTRA domain MRB58_08150 PF00392 Bacterial regulatory proteins, gntR family MRB58_08155 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRB58_08160 PF16363 GDP-mannose 4,6 dehydratase MRB58_08170 PF00330 Aconitase family (aconitate hydratase) MRB58_08175 PF00694 Aconitase C-terminal domain MRB58_08180 PF00107 Zinc-binding dehydrogenase MRB58_08190 PF13416 Bacterial extracellular solute-binding protein MRB58_08195 PF04357 TamB, inner membrane protein subunit of TAM complex MRB58_08200 PF17243 POTRA domain TamA domain 1 MRB58_08200 PF01103 Surface antigen MRB58_08210 PF00202 Aminotransferase class-III MRB58_08220 PF00583 Acetyltransferase (GNAT) family MRB58_08220 PF13380 CoA binding domain MRB58_08220 PF13607 Succinyl-CoA ligase like flavodoxin domain MRB58_08230 PF01618 MotA/TolQ/ExbB proton channel family MRB58_08245 PF00596 Class II Aldolase and Adducin N-terminal domain MRB58_08250 PF00005 ABC transporter MRB58_08250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_08255 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_08255 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_08260 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_08265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_08270 PF02530 Porin subfamily MRB58_08275 PF00128 Alpha amylase, catalytic domain MRB58_08280 PF02446 4-alpha-glucanotransferase MRB58_08285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MRB58_08285 PF11941 Domain of unknown function (DUF3459) MRB58_08285 PF00128 Alpha amylase, catalytic domain MRB58_08290 PF00128 Alpha amylase, catalytic domain MRB58_08290 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MRB58_08295 PF00128 Alpha amylase, catalytic domain MRB58_08295 PF02806 Alpha amylase, C-terminal all-beta domain MRB58_08295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MRB58_08300 PF00128 Alpha amylase, catalytic domain MRB58_08300 PF16657 Maltogenic Amylase, C-terminal domain MRB58_08305 PF11896 Domain of unknown function (DUF3416) MRB58_08305 PF00128 Alpha amylase, catalytic domain MRB58_08320 PF00723 Glycosyl hydrolases family 15 MRB58_08325 PF00202 Aminotransferase class-III MRB58_08335 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MRB58_08335 PF00117 Glutamine amidotransferase class-I MRB58_08345 PF13378 Enolase C-terminal domain-like MRB58_08345 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_08355 PF00463 Isocitrate lyase family MRB58_08360 PF01381 Helix-turn-helix MRB58_08360 PF06114 IrrE N-terminal-like domain MRB58_08360 PF09856 Predicted transcriptional regulator (DUF2083) MRB58_08365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_08365 PF03466 LysR substrate binding domain MRB58_08375 PF00550 Phosphopantetheine attachment site MRB58_08375 PF00698 Acyl transferase domain MRB58_08375 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_08375 PF00107 Zinc-binding dehydrogenase MRB58_08375 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_08375 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_08375 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_08375 PF08659 KR domain MRB58_08375 PF14765 Polyketide synthase dehydratase MRB58_08380 PF14765 Polyketide synthase dehydratase MRB58_08380 PF00107 Zinc-binding dehydrogenase MRB58_08380 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_08380 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_08380 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_08380 PF08659 KR domain MRB58_08380 PF00698 Acyl transferase domain MRB58_08380 PF00550 Phosphopantetheine attachment site MRB58_08380 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_08400 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_08410 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_08415 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_08425 PF17864 RuvB AAA lid domain MRB58_08425 PF05491 RuvB C-terminal winged helix domain MRB58_08425 PF05496 Holliday junction DNA helicase RuvB P-loop domain MRB58_08430 PF01330 RuvA N terminal domain MRB58_08430 PF07499 RuvA, C-terminal domain MRB58_08435 PF02075 Crossover junction endodeoxyribonuclease RuvC MRB58_08445 PF01709 Transcriptional regulator MRB58_08455 PF00196 Bacterial regulatory proteins, luxR family MRB58_08455 PF03472 Autoinducer binding domain MRB58_08460 PF00765 Autoinducer synthase MRB58_08465 PF13277 YmdB-like protein MRB58_08475 PF00892 EamA-like transporter family MRB58_08495 PF05552 Conserved TM helix MRB58_08495 PF00924 Mechanosensitive ion channel MRB58_08505 PF00120 Glutamine synthetase, catalytic domain MRB58_08510 PF01266 FAD dependent oxidoreductase MRB58_08515 PF00106 short chain dehydrogenase MRB58_08525 PF02653 Branched-chain amino acid transport system / permease component MRB58_08530 PF02653 Branched-chain amino acid transport system / permease component MRB58_08535 PF00005 ABC transporter MRB58_08540 PF13407 Periplasmic binding protein domain MRB58_08545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MRB58_08550 PF00920 Dehydratase family MRB58_08560 PF02653 Branched-chain amino acid transport system / permease component MRB58_08565 PF00005 ABC transporter MRB58_08570 PF13407 Periplasmic binding protein domain MRB58_08580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRB58_08585 PF00596 Class II Aldolase and Adducin N-terminal domain MRB58_08590 PF13407 Periplasmic binding protein domain MRB58_08595 PF02653 Branched-chain amino acid transport system / permease component MRB58_08600 PF00005 ABC transporter MRB58_08605 PF00455 DeoR C terminal sensor domain MRB58_08605 PF08220 DeoR-like helix-turn-helix domain MRB58_08615 PF00924 Mechanosensitive ion channel MRB58_08625 PF00535 Glycosyl transferase family 2 MRB58_08645 PF00535 Glycosyl transferase family 2 MRB58_08650 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MRB58_08650 PF13807 G-rich domain on putative tyrosine kinase MRB58_08650 PF02706 Chain length determinant protein MRB58_08655 PF02397 Bacterial sugar transferase MRB58_08665 PF16363 GDP-mannose 4,6 dehydratase MRB58_08670 PF13545 Crp-like helix-turn-helix domain MRB58_08670 PF00027 Cyclic nucleotide-binding domain MRB58_08675 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MRB58_08675 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MRB58_08675 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MRB58_08685 PF02844 Phosphoribosylglycinamide synthetase, N domain MRB58_08685 PF02843 Phosphoribosylglycinamide synthetase, C domain MRB58_08685 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MRB58_08690 PF01040 UbiA prenyltransferase family MRB58_08705 PF01523 Putative modulator of DNA gyrase MRB58_08710 PF00459 Inositol monophosphatase family MRB58_08720 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) MRB58_08725 PF02606 Tetraacyldisaccharide-1-P 4'-kinase MRB58_08745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_08745 PF03466 LysR substrate binding domain MRB58_08750 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase MRB58_08760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_08765 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_08765 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_08770 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_08775 PF00005 ABC transporter MRB58_08775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_08790 PF00378 Enoyl-CoA hydratase/isomerase MRB58_08795 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_08795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_08795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_08795 PF12806 Acetyl-CoA dehydrogenase C-terminal like MRB58_08810 PF03466 LysR substrate binding domain MRB58_08810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_08820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRB58_08840 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_08845 PF07722 Peptidase C26 MRB58_08850 PF02979 Nitrile hydratase, alpha chain MRB58_08870 PF00849 RNA pseudouridylate synthase MRB58_08870 PF01479 S4 domain MRB58_08875 PF14437 MafB19-like deaminase MRB58_08890 PF03144 Elongation factor Tu domain 2 MRB58_08890 PF00679 Elongation factor G C-terminus MRB58_08890 PF00009 Elongation factor Tu GTP binding domain MRB58_08890 PF06421 GTP-binding protein LepA C-terminus MRB58_08895 PF07995 Glucose / Sorbosone dehydrogenase MRB58_08900 PF00034 Cytochrome c MRB58_08930 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ MRB58_08955 PF00155 Aminotransferase class I and II MRB58_08960 PF05221 S-adenosyl-L-homocysteine hydrolase MRB58_08960 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain MRB58_08965 PF08241 Methyltransferase domain MRB58_08980 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MRB58_08990 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MRB58_08990 PF02874 ATP synthase alpha/beta family, beta-barrel domain MRB58_09005 PF00231 ATP synthase MRB58_09010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MRB58_09010 PF00306 ATP synthase alpha/beta chain, C terminal domain MRB58_09010 PF02874 ATP synthase alpha/beta family, beta-barrel domain MRB58_09015 PF00213 ATP synthase delta (OSCP) subunit MRB58_09020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRB58_09020 PF08269 Cache domain MRB58_09030 PF00892 EamA-like transporter family MRB58_09035 PF00561 alpha/beta hydrolase fold MRB58_09055 PF01554 MatE MRB58_09060 PF01209 ubiE/COQ5 methyltransferase family MRB58_09065 PF02219 Methylenetetrahydrofolate reductase MRB58_09070 PF02310 B12 binding domain MRB58_09070 PF02607 B12 binding domain MRB58_09070 PF02965 Vitamin B12 dependent methionine synthase, activation domain MRB58_09070 PF02574 Homocysteine S-methyltransferase MRB58_09070 PF00809 Pterin binding enzyme MRB58_09075 PF01810 LysE type translocator MRB58_09085 PF02608 ABC transporter substrate-binding protein PnrA-like MRB58_09090 PF00005 ABC transporter MRB58_09095 PF02653 Branched-chain amino acid transport system / permease component MRB58_09105 PF02653 Branched-chain amino acid transport system / permease component MRB58_09110 PF00691 OmpA family MRB58_09120 PF01171 PP-loop family MRB58_09125 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_09125 PF17862 AAA+ lid domain MRB58_09125 PF06480 FtsH Extracellular MRB58_09125 PF01434 Peptidase family M41 MRB58_09135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MRB58_09135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MRB58_09135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MRB58_09135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MRB58_09150 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_09160 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_09160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRB58_09170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_09170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_09180 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_09190 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_09195 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_09205 PF01979 Amidohydrolase family MRB58_09210 PF02615 Malate/L-lactate dehydrogenase MRB58_09215 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA MRB58_09220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MRB58_09220 PF12833 Helix-turn-helix domain MRB58_09220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MRB58_09220 PF02805 Metal binding domain of Ada MRB58_09235 PF12282 Signal transduction histidine kinase MRB58_09235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_09235 PF07568 Histidine kinase MRB58_09240 PF01545 Cation efflux family MRB58_09250 PF00459 Inositol monophosphatase family MRB58_09255 PF01507 Phosphoadenosine phosphosulfate reductase family MRB58_09260 PF00009 Elongation factor Tu GTP binding domain MRB58_09275 PF00892 EamA-like transporter family MRB58_09290 PF02910 Fumarate reductase flavoprotein C-term MRB58_09290 PF00890 FAD binding domain MRB58_09295 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MRB58_09305 PF01523 Putative modulator of DNA gyrase MRB58_09315 PF00583 Acetyltransferase (GNAT) family MRB58_09325 PF00596 Class II Aldolase and Adducin N-terminal domain MRB58_09335 PF05872 Bacterial protein of unknown function (DUF853) MRB58_09350 PF00072 Response regulator receiver domain MRB58_09355 PF00512 His Kinase A (phospho-acceptor) domain MRB58_09355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_09390 PF00005 ABC transporter MRB58_09390 PF00571 CBS domain MRB58_09395 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_09425 PF00011 Hsp20/alpha crystallin family MRB58_09430 PF01245 Ribosomal protein L19 MRB58_09440 PF01678 Diaminopimelate epimerase MRB58_09450 PF00072 Response regulator receiver domain MRB58_09450 PF00486 Transcriptional regulatory protein, C terminal MRB58_09460 PF00563 EAL domain MRB58_09460 PF03707 Bacterial signalling protein N terminal repeat MRB58_09460 PF00990 Diguanylate cyclase, GGDEF domain MRB58_09465 PF00664 ABC transporter transmembrane region MRB58_09465 PF00005 ABC transporter MRB58_09470 PF00529 HlyD membrane-fusion protein of T1SS MRB58_09470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRB58_09475 PF00999 Sodium/hydrogen exchanger family MRB58_09475 PF02254 TrkA-N domain MRB58_09495 PF04551 GcpE protein MRB58_09500 PF01329 Pterin 4 alpha carbinolamine dehydratase MRB58_09515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_09515 PF03466 LysR substrate binding domain MRB58_09525 PF04055 Radical SAM superfamily MRB58_09535 PF01632 Ribosomal protein L35 MRB58_09540 PF00453 Ribosomal protein L20 MRB58_09545 PF00106 short chain dehydrogenase MRB58_09555 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MRB58_09555 PF01409 tRNA synthetases class II core domain (F) MRB58_09565 PF03484 tRNA synthetase B5 domain MRB58_09565 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MRB58_09565 PF03483 B3/4 domain MRB58_09565 PF01588 Putative tRNA binding domain MRB58_09565 PF03147 Ferredoxin-fold anticodon binding domain MRB58_09570 PF02325 YGGT family MRB58_09575 PF03966 Trm112p-like protein MRB58_09580 PF02190 ATP-dependent protease La (LON) substrate-binding domain MRB58_09580 PF05362 Lon protease (S16) C-terminal proteolytic domain MRB58_09580 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_09585 PF00085 Thioredoxin MRB58_09595 PF00941 FAD binding domain in molybdopterin dehydrogenase MRB58_09595 PF03450 CO dehydrogenase flavoprotein C-terminal domain MRB58_09600 PF01799 [2Fe-2S] binding domain MRB58_09600 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_09610 PF17785 PUA-like domain MRB58_09610 PF10672 S-adenosylmethionine-dependent methyltransferase MRB58_09615 PF08032 RNA 2'-O ribose methyltransferase substrate binding MRB58_09615 PF00588 SpoU rRNA Methylase family MRB58_09625 PF02951 Prokaryotic glutathione synthetase, N-terminal domain MRB58_09625 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain MRB58_09630 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRB58_09640 PF04127 DNA / pantothenate metabolism flavoprotein MRB58_09640 PF02441 Flavoprotein MRB58_09645 PF00692 dUTPase MRB58_09650 PF00581 Rhodanese-like domain MRB58_09650 PF00899 ThiF family MRB58_09660 PF11737 Protein of unknown function (DUF3300) MRB58_09670 PF13193 AMP-binding enzyme C-terminal domain MRB58_09670 PF00501 AMP-binding enzyme MRB58_09675 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_09685 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_09690 PF00762 Ferrochelatase MRB58_09700 PF01168 Alanine racemase, N-terminal domain MRB58_09710 PF08264 Anticodon-binding domain of tRNA MRB58_09710 PF00133 tRNA synthetases class I (I, L, M and V) MRB58_09710 PF13603 Leucyl-tRNA synthetase, Domain 2 MRB58_09710 PF09334 tRNA synthetases class I (M) MRB58_09730 PF13411 MerR HTH family regulatory protein MRB58_09735 PF00857 Isochorismatase family MRB58_09740 PF02653 Branched-chain amino acid transport system / permease component MRB58_09745 PF00005 ABC transporter MRB58_09755 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_09755 PF00005 ABC transporter MRB58_09765 PF00120 Glutamine synthetase, catalytic domain MRB58_09765 PF03951 Glutamine synthetase, beta-Grasp domain MRB58_09775 PF00860 Permease family MRB58_09785 PF00149 Calcineurin-like phosphoesterase MRB58_09790 PF01266 FAD dependent oxidoreductase MRB58_09795 PF01011 PQQ enzyme repeat MRB58_09800 PF13360 PQQ-like domain MRB58_09805 PF00579 tRNA synthetases class I (W and Y) MRB58_09835 PF04186 FxsA cytoplasmic membrane protein MRB58_09840 PF02556 Preprotein translocase subunit SecB MRB58_09845 PF00929 Exonuclease MRB58_09850 PF01121 Dephospho-CoA kinase MRB58_09855 PF08501 Shikimate dehydrogenase substrate binding domain MRB58_09855 PF01488 Shikimate / quinate 5-dehydrogenase MRB58_09855 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MRB58_09860 PF03618 Kinase/pyrophosphorylase MRB58_09865 PF01208 Uroporphyrinogen decarboxylase (URO-D) MRB58_09870 PF03653 Uncharacterised protein family (UPF0093) MRB58_09875 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MRB58_09875 PF07498 Rho termination factor, N-terminal domain MRB58_09875 PF07497 Rho termination factor, RNA-binding domain MRB58_09880 PF03190 Protein of unknown function, DUF255 MRB58_09885 PF10396 GTP-binding protein TrmE N-terminus MRB58_09885 PF01926 50S ribosome-binding GTPase MRB58_09885 PF12631 MnmE helical domain MRB58_09890 PF13932 GidA associated domain MRB58_09890 PF01134 Glucose inhibited division protein A MRB58_09895 PF02527 rRNA small subunit methyltransferase G MRB58_09900 PF13614 AAA domain MRB58_09905 PF17762 HTH domain found in ParB protein MRB58_09905 PF02195 ParB-like nuclease domain MRB58_09915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MRB58_09915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MRB58_09920 PF00850 Histone deacetylase domain MRB58_09935 PF00501 AMP-binding enzyme MRB58_09935 PF13193 AMP-binding enzyme C-terminal domain MRB58_09940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRB58_09940 PF08269 Cache domain MRB58_09945 PF01177 Asp/Glu/Hydantoin racemase MRB58_09950 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_09965 PF01547 Bacterial extracellular solute-binding protein MRB58_09970 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_09975 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_09980 PF17912 MalK OB fold domain MRB58_09980 PF03459 TOBE domain MRB58_09980 PF00005 ABC transporter MRB58_09985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_09990 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_09995 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_09995 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_10000 PF00005 ABC transporter MRB58_10000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_10010 PF01425 Amidase MRB58_10020 PF03707 Bacterial signalling protein N terminal repeat MRB58_10020 PF00563 EAL domain MRB58_10020 PF00990 Diguanylate cyclase, GGDEF domain MRB58_10035 PF02600 Disulfide bond formation protein DsbB MRB58_10040 PF00271 Helicase conserved C-terminal domain MRB58_10040 PF08494 DEAD/H associated MRB58_10040 PF00270 DEAD/DEAH box helicase MRB58_10045 PF10005 zinc-ribbon domain MRB58_10045 PF15887 Putative zinc-binding metallo-peptidase MRB58_10050 PF01118 Semialdehyde dehydrogenase, NAD binding domain MRB58_10050 PF02774 Semialdehyde dehydrogenase, dimerisation domain MRB58_10070 PF01274 Malate synthase MRB58_10075 PF00892 EamA-like transporter family MRB58_10080 PF00180 Isocitrate/isopropylmalate dehydrogenase MRB58_10090 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_10100 PF00248 Aldo/keto reductase family MRB58_10110 PF13472 GDSL-like Lipase/Acylhydrolase family MRB58_10115 PF00485 Phosphoribulokinase / Uridine kinase family MRB58_10120 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MRB58_10125 PF00977 Histidine biosynthesis protein MRB58_10130 PF00977 Histidine biosynthesis protein MRB58_10135 PF00117 Glutamine amidotransferase class-I MRB58_10145 PF00475 Imidazoleglycerol-phosphate dehydratase MRB58_10150 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MRB58_10165 PF03023 Lipid II flippase MurJ MRB58_10170 PF01842 ACT domain MRB58_10170 PF08335 GlnD PII-uridylyltransferase MRB58_10170 PF01966 HD domain MRB58_10175 PF06969 HemN C-terminal domain MRB58_10175 PF04055 Radical SAM superfamily MRB58_10180 PF01725 Ham1 family MRB58_10185 PF01138 3' exoribonuclease family, domain 1 MRB58_10185 PF03725 3' exoribonuclease family, domain 2 MRB58_10190 PF01628 HrcA protein C terminal domain MRB58_10205 PF00155 Aminotransferase class I and II MRB58_10215 PF01156 Inosine-uridine preferring nucleoside hydrolase MRB58_10235 PF00196 Bacterial regulatory proteins, luxR family MRB58_10235 PF00072 Response regulator receiver domain MRB58_10240 PF00072 Response regulator receiver domain MRB58_10240 PF00196 Bacterial regulatory proteins, luxR family MRB58_10245 PF13493 Domain of unknown function (DUF4118) MRB58_10245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_10245 PF00512 His Kinase A (phospho-acceptor) domain MRB58_10245 PF00989 PAS fold MRB58_10245 PF08447 PAS fold MRB58_10245 PF13426 PAS domain MRB58_10250 PF03466 LysR substrate binding domain MRB58_10250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_10280 PF05401 Nodulation protein S (NodS) MRB58_10295 PF01594 AI-2E family transporter MRB58_10320 PF03466 LysR substrate binding domain MRB58_10320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_10335 PF13533 Biotin-lipoyl like MRB58_10340 PF01381 Helix-turn-helix MRB58_10340 PF09856 Predicted transcriptional regulator (DUF2083) MRB58_10340 PF06114 IrrE N-terminal-like domain MRB58_10345 PF01039 Carboxyl transferase domain MRB58_10350 PF18140 Propionyl-coenzyme A carboxylase BT domain MRB58_10350 PF00289 Biotin carboxylase, N-terminal domain MRB58_10350 PF00364 Biotin-requiring enzyme MRB58_10350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRB58_10350 PF02785 Biotin carboxylase C-terminal domain MRB58_10360 PF00005 ABC transporter MRB58_10365 PF00005 ABC transporter MRB58_10365 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_10370 PF02653 Branched-chain amino acid transport system / permease component MRB58_10370 PF11862 Domain of unknown function (DUF3382) MRB58_10375 PF02653 Branched-chain amino acid transport system / permease component MRB58_10385 PF00701 Dihydrodipicolinate synthetase family MRB58_10390 PF07729 FCD domain MRB58_10390 PF00392 Bacterial regulatory proteins, gntR family MRB58_10405 PF00106 short chain dehydrogenase MRB58_10415 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_10420 PF01144 Coenzyme A transferase MRB58_10425 PF01144 Coenzyme A transferase MRB58_10440 PF00440 Bacterial regulatory proteins, tetR family MRB58_10440 PF13977 BetI-type transcriptional repressor, C-terminal MRB58_10445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_10445 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MRB58_10450 PF01613 Flavin reductase like domain MRB58_10470 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_10480 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_10490 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_10490 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_10500 PF00106 short chain dehydrogenase MRB58_10510 PF03466 LysR substrate binding domain MRB58_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_10515 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain MRB58_10515 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain MRB58_10520 PF17042 Nucleotide-binding C-terminal domain MRB58_10520 PF07005 Sugar-binding N-terminal domain MRB58_10525 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_10535 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_10540 PF16363 GDP-mannose 4,6 dehydratase MRB58_10550 PF02627 Carboxymuconolactone decarboxylase family MRB58_10560 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_10560 PF00107 Zinc-binding dehydrogenase MRB58_10565 PF01638 HxlR-like helix-turn-helix MRB58_10570 PF12833 Helix-turn-helix domain MRB58_10570 PF01965 DJ-1/PfpI family MRB58_10575 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_10575 PF01799 [2Fe-2S] binding domain MRB58_10585 PF00034 Cytochrome c MRB58_10590 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRB58_10590 PF00753 Metallo-beta-lactamase superfamily MRB58_10595 PF02211 Nitrile hydratase beta subunit MRB58_10600 PF02979 Nitrile hydratase, alpha chain MRB58_10630 PF00753 Metallo-beta-lactamase superfamily MRB58_10630 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRB58_10660 PF00196 Bacterial regulatory proteins, luxR family MRB58_10660 PF00072 Response regulator receiver domain MRB58_10665 PF00072 Response regulator receiver domain MRB58_10665 PF00196 Bacterial regulatory proteins, luxR family MRB58_10670 PF00072 Response regulator receiver domain MRB58_10670 PF00196 Bacterial regulatory proteins, luxR family MRB58_10675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_10675 PF00512 His Kinase A (phospho-acceptor) domain MRB58_10675 PF00989 PAS fold MRB58_10675 PF08447 PAS fold MRB58_10675 PF13426 PAS domain MRB58_10675 PF13493 Domain of unknown function (DUF4118) MRB58_10700 PF13538 UvrD-like helicase C-terminal domain MRB58_10715 PF02796 Helix-turn-helix domain of resolvase MRB58_10715 PF00239 Resolvase, N terminal domain MRB58_10765 PF00271 Helicase conserved C-terminal domain MRB58_10765 PF04851 Type III restriction enzyme, res subunit MRB58_10805 PF02195 ParB-like nuclease domain MRB58_10850 PF00574 Clp protease MRB58_10875 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH MRB58_10940 PF02195 ParB-like nuclease domain MRB58_10940 PF17762 HTH domain found in ParB protein MRB58_10945 PF17762 HTH domain found in ParB protein MRB58_10945 PF02195 ParB-like nuclease domain MRB58_10965 PF00512 His Kinase A (phospho-acceptor) domain MRB58_10965 PF00989 PAS fold MRB58_10965 PF08447 PAS fold MRB58_10965 PF13426 PAS domain MRB58_10965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_10965 PF13493 Domain of unknown function (DUF4118) MRB58_10970 PF00072 Response regulator receiver domain MRB58_10970 PF00196 Bacterial regulatory proteins, luxR family MRB58_10975 PF00196 Bacterial regulatory proteins, luxR family MRB58_10975 PF00072 Response regulator receiver domain MRB58_10980 PF00561 alpha/beta hydrolase fold MRB58_10995 PF02627 Carboxymuconolactone decarboxylase family MRB58_11000 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MRB58_11035 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_11035 PF00107 Zinc-binding dehydrogenase MRB58_11040 PF01638 HxlR-like helix-turn-helix MRB58_11045 PF01965 DJ-1/PfpI family MRB58_11045 PF12833 Helix-turn-helix domain MRB58_11050 PF01799 [2Fe-2S] binding domain MRB58_11050 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_11060 PF00034 Cytochrome c MRB58_11065 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRB58_11065 PF00753 Metallo-beta-lactamase superfamily MRB58_11070 PF02211 Nitrile hydratase beta subunit MRB58_11075 PF02979 Nitrile hydratase, alpha chain MRB58_11095 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_11095 PF13378 Enolase C-terminal domain-like MRB58_11100 PF00171 Aldehyde dehydrogenase family MRB58_11105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRB58_11105 PF00205 Thiamine pyrophosphate enzyme, central domain MRB58_11105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRB58_11125 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_11125 PF17862 AAA+ lid domain MRB58_11125 PF01434 Peptidase family M41 MRB58_11150 PF00400 WD domain, G-beta repeat MRB58_11150 PF12894 Anaphase-promoting complex subunit 4 WD40 domain MRB58_11160 PF01734 Patatin-like phospholipase MRB58_11170 PF12894 Anaphase-promoting complex subunit 4 WD40 domain MRB58_11170 PF00400 WD domain, G-beta repeat MRB58_11220 PF00266 Aminotransferase class-V MRB58_11425 PF01527 Transposase MRB58_11455 PF00664 ABC transporter transmembrane region MRB58_11455 PF00005 ABC transporter MRB58_11460 PF00535 Glycosyl transferase family 2 MRB58_11465 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_11470 PF16363 GDP-mannose 4,6 dehydratase MRB58_11480 PF13439 Glycosyltransferase Family 4 MRB58_11495 PF13439 Glycosyltransferase Family 4 MRB58_11495 PF00534 Glycosyl transferases group 1 MRB58_11505 PF13439 Glycosyltransferase Family 4 MRB58_11505 PF00534 Glycosyl transferases group 1 MRB58_11510 PF00535 Glycosyl transferase family 2 MRB58_11520 PF01695 IstB-like ATP binding protein MRB58_11545 PF00535 Glycosyl transferase family 2 MRB58_11555 PF03062 MBOAT, membrane-bound O-acyltransferase family MRB58_11660 PF01527 Transposase MRB58_11665 PF05717 IS66 Orf2 like protein MRB58_11670 PF13005 zinc-finger binding domain of transposase IS66 MRB58_11670 PF13007 Transposase C of IS166 homeodomain MRB58_11670 PF13817 IS66 C-terminal element MRB58_11670 PF03050 Transposase IS66 family MRB58_11695 PF01625 Peptide methionine sulfoxide reductase MRB58_11700 PF03411 Penicillin-insensitive murein endopeptidase MRB58_11725 PF00543 Nitrogen regulatory protein P-II MRB58_11730 PF00909 Ammonium Transporter Family MRB58_11735 PF03808 Glycosyl transferase WecB/TagA/CpsF family MRB58_11750 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_11750 PF01968 Hydantoinase/oxoprolinase MRB58_11775 PF00282 Pyridoxal-dependent decarboxylase conserved domain MRB58_11785 PF01699 Sodium/calcium exchanger protein MRB58_11790 PF07995 Glucose / Sorbosone dehydrogenase MRB58_11800 PF12706 Beta-lactamase superfamily domain MRB58_11805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_11805 PF03466 LysR substrate binding domain MRB58_11810 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_11810 PF13192 Thioredoxin domain MRB58_11815 PF00578 AhpC/TSA family MRB58_11815 PF10417 C-terminal domain of 1-Cys peroxiredoxin MRB58_11820 PF00924 Mechanosensitive ion channel MRB58_11840 PF07995 Glucose / Sorbosone dehydrogenase MRB58_11860 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MRB58_11860 PF00034 Cytochrome c MRB58_11860 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MRB58_11865 PF00115 Cytochrome C and Quinol oxidase polypeptide I MRB58_11880 PF00512 His Kinase A (phospho-acceptor) domain MRB58_11880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_11880 PF00989 PAS fold MRB58_11885 PF00392 Bacterial regulatory proteins, gntR family MRB58_11885 PF07729 FCD domain MRB58_11895 PF02653 Branched-chain amino acid transport system / permease component MRB58_11895 PF11862 Domain of unknown function (DUF3382) MRB58_11905 PF00005 ABC transporter MRB58_11910 PF00005 ABC transporter MRB58_11910 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_11915 PF07687 Peptidase dimerisation domain MRB58_11915 PF01546 Peptidase family M20/M25/M40 MRB58_11925 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_11930 PF00529 HlyD membrane-fusion protein of T1SS MRB58_11930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MRB58_11935 PF00873 AcrB/AcrD/AcrF family MRB58_11945 PF00664 ABC transporter transmembrane region MRB58_11945 PF00005 ABC transporter MRB58_11950 PF03412 Peptidase C39 family MRB58_11950 PF00005 ABC transporter MRB58_11950 PF00664 ABC transporter transmembrane region MRB58_11955 PF13533 Biotin-lipoyl like MRB58_11960 PF00486 Transcriptional regulatory protein, C terminal MRB58_11960 PF00072 Response regulator receiver domain MRB58_11965 PF00512 His Kinase A (phospho-acceptor) domain MRB58_11965 PF01627 Hpt domain MRB58_11965 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MRB58_11965 PF00072 Response regulator receiver domain MRB58_11965 PF00672 HAMP domain MRB58_11965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_11975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_11975 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_11985 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_11990 PF13378 Enolase C-terminal domain-like MRB58_11990 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_11995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_11995 PF03466 LysR substrate binding domain MRB58_12000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_12000 PF03466 LysR substrate binding domain MRB58_12005 PF02780 Transketolase, C-terminal domain MRB58_12005 PF00456 Transketolase, thiamine diphosphate binding domain MRB58_12005 PF02779 Transketolase, pyrimidine binding domain MRB58_12010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_12010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_12015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_12015 PF03466 LysR substrate binding domain MRB58_12020 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_12030 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_12030 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_12040 PF02779 Transketolase, pyrimidine binding domain MRB58_12040 PF02780 Transketolase, C-terminal domain MRB58_12045 PF00456 Transketolase, thiamine diphosphate binding domain MRB58_12065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_12065 PF03466 LysR substrate binding domain MRB58_12070 PF13378 Enolase C-terminal domain-like MRB58_12070 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_12075 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12080 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12085 PF00005 ABC transporter MRB58_12085 PF08402 TOBE domain MRB58_12090 PF13416 Bacterial extracellular solute-binding protein MRB58_12095 PF01266 FAD dependent oxidoreductase MRB58_12100 PF00171 Aldehyde dehydrogenase family MRB58_12105 PF13378 Enolase C-terminal domain-like MRB58_12105 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_12110 PF00392 Bacterial regulatory proteins, gntR family MRB58_12110 PF00155 Aminotransferase class I and II MRB58_12120 PF00732 GMC oxidoreductase MRB58_12120 PF05199 GMC oxidoreductase MRB58_12135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_12135 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_12135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_12140 PF01575 MaoC like domain MRB58_12145 PF00106 short chain dehydrogenase MRB58_12165 PF00378 Enoyl-CoA hydratase/isomerase MRB58_12175 PF00005 ABC transporter MRB58_12175 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_12180 PF00005 ABC transporter MRB58_12185 PF02653 Branched-chain amino acid transport system / permease component MRB58_12195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_12195 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_12195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_12205 PF14535 AMP-binding enzyme C-terminal domain MRB58_12205 PF00501 AMP-binding enzyme MRB58_12210 PF02515 CoA-transferase family III MRB58_12225 PF00561 alpha/beta hydrolase fold MRB58_12230 PF00072 Response regulator receiver domain MRB58_12230 PF00486 Transcriptional regulatory protein, C terminal MRB58_12240 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_12240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_12240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_12245 PF02082 Transcriptional regulator MRB58_12255 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12260 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12265 PF12857 TOBE-like domain MRB58_12265 PF00005 ABC transporter MRB58_12275 PF01425 Amidase MRB58_12285 PF02515 CoA-transferase family III MRB58_12300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRB58_12300 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRB58_12305 PF02653 Branched-chain amino acid transport system / permease component MRB58_12315 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_12315 PF00005 ABC transporter MRB58_12320 PF00005 ABC transporter MRB58_12325 PF00753 Metallo-beta-lactamase superfamily MRB58_12330 PF00392 Bacterial regulatory proteins, gntR family MRB58_12330 PF07729 FCD domain MRB58_12335 PF00857 Isochorismatase family MRB58_12350 PF02515 CoA-transferase family III MRB58_12370 PF01370 NAD dependent epimerase/dehydratase family MRB58_12370 PF02911 Formyl transferase, C-terminal domain MRB58_12370 PF00551 Formyl transferase MRB58_12375 PF07715 TonB-dependent Receptor Plug Domain MRB58_12375 PF07660 Secretin and TonB N terminus short domain MRB58_12375 PF00593 TonB dependent receptor MRB58_12380 PF00296 Luciferase-like monooxygenase MRB58_12385 PF00005 ABC transporter MRB58_12390 PF01032 FecCD transport family MRB58_12395 PF01032 FecCD transport family MRB58_12405 PF01968 Hydantoinase/oxoprolinase MRB58_12405 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_12415 PF00924 Mechanosensitive ion channel MRB58_12415 PF05552 Conserved TM helix MRB58_12425 PF05430 S-adenosyl-L-methionine-dependent methyltransferase MRB58_12425 PF01266 FAD dependent oxidoreductase MRB58_12430 PF03459 TOBE domain MRB58_12430 PF17912 MalK OB fold domain MRB58_12430 PF00005 ABC transporter MRB58_12440 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12445 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12450 PF00034 Cytochrome c MRB58_12455 PF07995 Glucose / Sorbosone dehydrogenase MRB58_12465 PF01970 Tripartite tricarboxylate transporter TctA family MRB58_12480 PF00486 Transcriptional regulatory protein, C terminal MRB58_12480 PF00072 Response regulator receiver domain MRB58_12485 PF00512 His Kinase A (phospho-acceptor) domain MRB58_12485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_12495 PF01384 Phosphate transporter family MRB58_12500 PF00293 NUDIX domain MRB58_12515 PF00873 AcrB/AcrD/AcrF family MRB58_12515 PF00873 AcrB/AcrD/AcrF family MRB58_12525 PF08402 TOBE domain MRB58_12525 PF00005 ABC transporter MRB58_12545 PF00815 Histidinol dehydrogenase MRB58_12550 PF00005 ABC transporter MRB58_12550 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_12555 PF00005 ABC transporter MRB58_12560 PF13458 Periplasmic binding protein MRB58_12565 PF02653 Branched-chain amino acid transport system / permease component MRB58_12570 PF02653 Branched-chain amino acid transport system / permease component MRB58_12570 PF11862 Domain of unknown function (DUF3382) MRB58_12585 PF01321 Creatinase/Prolidase N-terminal domain MRB58_12585 PF00557 Metallopeptidase family M24 MRB58_12590 PF01979 Amidohydrolase family MRB58_12595 PF01979 Amidohydrolase family MRB58_12600 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12605 PF08402 TOBE domain MRB58_12605 PF00005 ABC transporter MRB58_12615 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12635 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family MRB58_12640 PF01321 Creatinase/Prolidase N-terminal domain MRB58_12640 PF00557 Metallopeptidase family M24 MRB58_12645 PF02423 Ornithine cyclodeaminase/mu-crystallin family MRB58_12650 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_12660 PF00582 Universal stress protein family MRB58_12665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_12670 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_12675 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_12680 PF00392 Bacterial regulatory proteins, gntR family MRB58_12680 PF00155 Aminotransferase class I and II MRB58_12685 PF01037 Lrp/AsnC ligand binding domain MRB58_12690 PF00171 Aldehyde dehydrogenase family MRB58_12695 PF00202 Aminotransferase class-III MRB58_12710 PF04349 Periplasmic glucan biosynthesis protein, MdoG MRB58_12715 PF07683 Cobalamin synthesis protein cobW C-terminal domain MRB58_12715 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRB58_12720 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MRB58_12725 PF00510 Cytochrome c oxidase subunit III MRB58_12730 PF00115 Cytochrome C and Quinol oxidase polypeptide I MRB58_12735 PF06481 COX Aromatic Rich Motif MRB58_12735 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MRB58_12745 PF00933 Glycosyl hydrolase family 3 N terminal domain MRB58_12745 PF01915 Glycosyl hydrolase family 3 C-terminal domain MRB58_12745 PF14310 Fibronectin type III-like domain MRB58_12750 PF06472 ABC transporter transmembrane region 2 MRB58_12750 PF00005 ABC transporter MRB58_12755 PF02653 Branched-chain amino acid transport system / permease component MRB58_12760 PF02653 Branched-chain amino acid transport system / permease component MRB58_12765 PF00005 ABC transporter MRB58_12770 PF13407 Periplasmic binding protein domain MRB58_12785 PF00174 Oxidoreductase molybdopterin binding domain MRB58_12790 PF00512 His Kinase A (phospho-acceptor) domain MRB58_12790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_12790 PF16736 Single Cache-like MRB58_12790 PF00989 PAS fold MRB58_12800 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12805 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_12810 PF00005 ABC transporter MRB58_12815 PF01895 PhoU domain MRB58_12820 PF00486 Transcriptional regulatory protein, C terminal MRB58_12820 PF00072 Response regulator receiver domain MRB58_12830 PF00202 Aminotransferase class-III MRB58_12835 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MRB58_12835 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MRB58_12845 PF01430 Hsp33 protein MRB58_12855 PF00873 AcrB/AcrD/AcrF family MRB58_12865 PF00486 Transcriptional regulatory protein, C terminal MRB58_12865 PF00072 Response regulator receiver domain MRB58_12870 PF00072 Response regulator receiver domain MRB58_12880 PF02653 Branched-chain amino acid transport system / permease component MRB58_12885 PF02653 Branched-chain amino acid transport system / permease component MRB58_12890 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_12890 PF00005 ABC transporter MRB58_12895 PF00005 ABC transporter MRB58_12915 PF00037 4Fe-4S binding domain MRB58_12915 PF11953 Domain of unknown function (DUF3470) MRB58_12940 PF00830 Ribosomal L28 family MRB58_12945 PF02592 Putative vitamin uptake transporter MRB58_12955 PF11775 Cobalamin biosynthesis protein CobT VWA domain MRB58_12955 PF06213 Cobalamin biosynthesis protein CobT MRB58_12960 PF08406 CbbQ/NirQ/NorQ C-terminal MRB58_12960 PF07728 AAA domain (dynein-related subfamily) MRB58_12960 PF12556 Cobaltochelatase CobS subunit N terminal MRB58_12965 PF00226 DnaJ domain MRB58_12985 PF01544 CorA-like Mg2+ transporter protein MRB58_12990 PF00764 Arginosuccinate synthase MRB58_12995 PF07720 Tetratricopeptide repeat MRB58_12995 PF01435 Peptidase family M48 MRB58_13005 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MRB58_13005 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MRB58_13010 PF01012 Electron transfer flavoprotein domain MRB58_13010 PF00766 Electron transfer flavoprotein FAD-binding domain MRB58_13015 PF01012 Electron transfer flavoprotein domain MRB58_13020 PF01923 Cobalamin adenosyltransferase MRB58_13030 PF01494 FAD binding domain MRB58_13040 PF00814 Glycoprotease family MRB58_13045 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MRB58_13045 PF03900 Porphobilinogen deaminase, C-terminal domain MRB58_13060 PF09297 NADH pyrophosphatase zinc ribbon domain MRB58_13060 PF00293 NUDIX domain MRB58_13060 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain MRB58_13070 PF00034 Cytochrome c MRB58_13080 PF00982 Glycosyltransferase family 20 MRB58_13090 PF00723 Glycosyl hydrolases family 15 MRB58_13095 PF02358 Trehalose-phosphatase MRB58_13100 PF01544 CorA-like Mg2+ transporter protein MRB58_13105 PF00633 Helix-hairpin-helix motif MRB58_13105 PF10576 Iron-sulfur binding domain of endonuclease III MRB58_13105 PF00730 HhH-GPD superfamily base excision DNA repair protein MRB58_13110 PF13416 Bacterial extracellular solute-binding protein MRB58_13115 PF13098 Thioredoxin-like domain MRB58_13115 PF11412 Disulphide bond corrector protein DsbC MRB58_13115 PF02683 Cytochrome C biogenesis protein transmembrane region MRB58_13125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_13130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_13135 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_13140 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_13140 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_13150 PF00005 ABC transporter MRB58_13150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_13160 PF06574 FAD synthetase MRB58_13160 PF01687 Riboflavin kinase MRB58_13170 PF01119 DNA mismatch repair protein, C-terminal domain MRB58_13170 PF08676 MutL C terminal dimerisation domain MRB58_13175 PF03061 Thioesterase superfamily MRB58_13180 PF01618 MotA/TolQ/ExbB proton channel family MRB58_13185 PF02472 Biopolymer transport protein ExbD/TolR MRB58_13195 PF07676 WD40-like Beta Propeller Repeat MRB58_13195 PF04052 TolB amino-terminal domain MRB58_13200 PF02104 SURF1 family MRB58_13205 PF00510 Cytochrome c oxidase subunit III MRB58_13210 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 MRB58_13220 PF01040 UbiA prenyltransferase family MRB58_13225 PF00115 Cytochrome C and Quinol oxidase polypeptide I MRB58_13230 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MRB58_13230 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MRB58_13250 PF08032 RNA 2'-O ribose methyltransferase substrate binding MRB58_13250 PF00588 SpoU rRNA Methylase family MRB58_13260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_13260 PF03466 LysR substrate binding domain MRB58_13265 PF00248 Aldo/keto reductase family MRB58_13295 PF00550 Phosphopantetheine attachment site MRB58_13305 PF00106 short chain dehydrogenase MRB58_13310 PF00106 short chain dehydrogenase MRB58_13330 PF01068 ATP dependent DNA ligase domain MRB58_13330 PF04679 ATP dependent DNA ligase C terminal region MRB58_13330 PF04675 DNA ligase N terminus MRB58_13340 PF13614 AAA domain MRB58_13340 PF13807 G-rich domain on putative tyrosine kinase MRB58_13340 PF02706 Chain length determinant protein MRB58_13345 PF02397 Bacterial sugar transferase MRB58_13355 PF01842 ACT domain MRB58_13355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_13355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_13370 PF00719 Inorganic pyrophosphatase MRB58_13375 PF16363 GDP-mannose 4,6 dehydratase MRB58_13380 PF08666 SAF domain MRB58_13380 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus MRB58_13390 PF07411 Domain of unknown function (DUF1508) MRB58_13395 PF03060 Nitronate monooxygenase MRB58_13400 PF10011 Predicted membrane protein (DUF2254) MRB58_13420 PF00563 EAL domain MRB58_13420 PF17153 Periplasmic sensor domain, extracellular MRB58_13425 PF01557 Fumarylacetoacetate (FAA) hydrolase family MRB58_13430 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_13430 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_13435 PF00270 DEAD/DEAH box helicase MRB58_13435 PF17764 3′ DNA-binding domain (3′BD) MRB58_13435 PF18074 Primosomal protein N C-terminal domain MRB58_13435 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MRB58_13440 PF00923 Transaldolase/Fructose-6-phosphate aldolase MRB58_13455 PF00204 DNA gyrase B MRB58_13455 PF00986 DNA gyrase B subunit, carboxyl terminus MRB58_13455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_13455 PF01751 Toprim domain MRB58_13460 PF01569 PAP2 superfamily MRB58_13470 PF12804 MobA-like NTP transferase domain MRB58_13470 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_13475 PF13478 XdhC Rossmann domain MRB58_13475 PF02625 XdhC and CoxI family MRB58_13495 PF00072 Response regulator receiver domain MRB58_13495 PF00486 Transcriptional regulatory protein, C terminal MRB58_13500 PF13756 Stimulus-sensing domain MRB58_13500 PF00672 HAMP domain MRB58_13500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_13500 PF00512 His Kinase A (phospho-acceptor) domain MRB58_13500 PF13755 Sensor N-terminal transmembrane domain MRB58_13505 PF02603 HPr Serine kinase N terminus MRB58_13505 PF07475 HPr Serine kinase C-terminal domain MRB58_13510 PF03610 PTS system fructose IIA component MRB58_13510 PF03830 PTS system sorbose subfamily IIB component MRB58_13515 PF00381 PTS HPr component phosphorylation site MRB58_13525 PF08448 PAS fold MRB58_13525 PF08447 PAS fold MRB58_13525 PF00990 Diguanylate cyclase, GGDEF domain MRB58_13525 PF00563 EAL domain MRB58_13530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MRB58_13540 PF00815 Histidinol dehydrogenase MRB58_13545 PF06793 Uncharacterised protein family (UPF0262) MRB58_13555 PF01176 Translation initiation factor 1A / IF-1 MRB58_13560 PF02545 Maf-like protein MRB58_13565 PF03884 DNA gyrase inhibitor YacG MRB58_13575 PF01740 STAS domain MRB58_13610 PF07228 Stage II sporulation protein E (SpoIIE) MRB58_13610 PF00672 HAMP domain MRB58_13615 PF00211 Adenylate and Guanylate cyclase catalytic domain MRB58_13620 PF00580 UvrD/REP helicase N-terminal domain MRB58_13620 PF13361 UvrD-like helicase C-terminal domain MRB58_13630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRB58_13630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MRB58_13635 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_13635 PF04324 BFD-like [2Fe-2S] binding domain MRB58_13645 PF08220 DeoR-like helix-turn-helix domain MRB58_13645 PF00455 DeoR C terminal sensor domain MRB58_13655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_13665 PF00120 Glutamine synthetase, catalytic domain MRB58_13670 PF00465 Iron-containing alcohol dehydrogenase MRB58_13675 PF00501 AMP-binding enzyme MRB58_13675 PF14535 AMP-binding enzyme C-terminal domain MRB58_13680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRB58_13680 PF01261 Xylose isomerase-like TIM barrel MRB58_13695 PF01565 FAD binding domain MRB58_13695 PF02913 FAD linked oxidases, C-terminal domain MRB58_13705 PF04545 Sigma-70, region 4 MRB58_13705 PF04542 Sigma-70 region 2 MRB58_13705 PF00140 Sigma-70 factor, region 1.2 MRB58_13735 PF09084 NMT1/THI5 like MRB58_13740 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_13750 PF00709 Adenylosuccinate synthetase MRB58_13755 PF00892 EamA-like transporter family MRB58_13760 PF01261 Xylose isomerase-like TIM barrel MRB58_13770 PF01842 ACT domain MRB58_13770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_13770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_13780 PF00990 Diguanylate cyclase, GGDEF domain MRB58_13785 PF02678 Pirin MRB58_13785 PF05726 Pirin C-terminal cupin domain MRB58_13790 PF01740 STAS domain MRB58_13790 PF00916 Sulfate permease family MRB58_13795 PF00582 Universal stress protein family MRB58_13800 PF01476 LysM domain MRB58_13800 PF17969 L,D-transpeptidase C-terminal domain MRB58_13800 PF03734 L,D-transpeptidase catalytic domain MRB58_13805 PF00364 Biotin-requiring enzyme MRB58_13805 PF00561 alpha/beta hydrolase fold MRB58_13810 PF01226 Formate/nitrite transporter MRB58_13815 PF13426 PAS domain MRB58_13815 PF07568 Histidine kinase MRB58_13815 PF13581 Histidine kinase-like ATPase domain MRB58_13840 PF00444 Ribosomal protein L36 MRB58_13845 PF03776 Septum formation topological specificity factor MinE MRB58_13850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MRB58_13855 PF03775 Septum formation inhibitor MinC, C-terminal domain MRB58_13870 PF03358 NADPH-dependent FMN reductase MRB58_13875 PF01758 Sodium Bile acid symporter family MRB58_13880 PF03960 ArsC family MRB58_13895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_13900 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_13905 PF00392 Bacterial regulatory proteins, gntR family MRB58_13905 PF07702 UTRA domain MRB58_13910 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_13920 PF01575 MaoC like domain MRB58_13925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_13925 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_13925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_13930 PF02515 CoA-transferase family III MRB58_13935 PF02515 CoA-transferase family III MRB58_13945 PF02515 CoA-transferase family III MRB58_13950 PF00682 HMGL-like MRB58_13955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_13955 PF03466 LysR substrate binding domain MRB58_13960 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_13975 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_13975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_13980 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_13980 PF13378 Enolase C-terminal domain-like MRB58_13985 PF02583 Metal-sensitive transcriptional repressor MRB58_13990 PF03824 High-affinity nickel-transport protein MRB58_13995 PF07687 Peptidase dimerisation domain MRB58_13995 PF01546 Peptidase family M20/M25/M40 MRB58_14000 PF03466 LysR substrate binding domain MRB58_14000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_14015 PF00698 Acyl transferase domain MRB58_14015 PF00550 Phosphopantetheine attachment site MRB58_14015 PF08659 KR domain MRB58_14015 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_14015 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_14015 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_14015 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_14015 PF14765 Polyketide synthase dehydratase MRB58_14020 PF00005 ABC transporter MRB58_14020 PF08402 TOBE domain MRB58_14025 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_14030 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_14040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_14045 PF01220 Dehydroquinase class II MRB58_14055 PF00248 Aldo/keto reductase family MRB58_14060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_14060 PF03466 LysR substrate binding domain MRB58_14075 PF00005 ABC transporter MRB58_14075 PF02687 FtsX-like permease family MRB58_14075 PF12704 MacB-like periplasmic core domain MRB58_14095 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRB58_14095 PF07683 Cobalamin synthesis protein cobW C-terminal domain MRB58_14100 PF00005 ABC transporter MRB58_14105 PF01032 FecCD transport family MRB58_14115 PF07715 TonB-dependent Receptor Plug Domain MRB58_14115 PF00593 TonB dependent receptor MRB58_14120 PF01232 Mannitol dehydrogenase Rossmann domain MRB58_14120 PF08125 Mannitol dehydrogenase C-terminal domain MRB58_14125 PF03786 D-mannonate dehydratase (UxuA) MRB58_14130 PF00392 Bacterial regulatory proteins, gntR family MRB58_14130 PF07729 FCD domain MRB58_14135 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_14145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_14150 PF00107 Zinc-binding dehydrogenase MRB58_14150 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_14155 PF03576 Peptidase family S58 MRB58_14160 PF00156 Phosphoribosyl transferase domain MRB58_14170 PF00107 Zinc-binding dehydrogenase MRB58_14170 PF16884 N-terminal domain of oxidoreductase MRB58_14175 PF00501 AMP-binding enzyme MRB58_14175 PF13193 AMP-binding enzyme C-terminal domain MRB58_14180 PF00144 Beta-lactamase MRB58_14190 PF00005 ABC transporter MRB58_14195 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_14195 PF00005 ABC transporter MRB58_14205 PF02653 Branched-chain amino acid transport system / permease component MRB58_14215 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_14215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_14215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_14220 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_14220 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_14225 PF00106 short chain dehydrogenase MRB58_14230 PF02803 Thiolase, C-terminal domain MRB58_14230 PF00108 Thiolase, N-terminal domain MRB58_14235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_14235 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_14235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_14250 PF09339 IclR helix-turn-helix domain MRB58_14260 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MRB58_14260 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MRB58_14265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_14265 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_14265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_14270 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_14270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_14270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_14275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MRB58_14275 PF00378 Enoyl-CoA hydratase/isomerase MRB58_14275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MRB58_14290 PF02541 Ppx/GppA phosphatase family MRB58_14295 PF01728 FtsJ-like methyltransferase MRB58_14300 PF01565 FAD binding domain MRB58_14300 PF02913 FAD linked oxidases, C-terminal domain MRB58_14310 PF00300 Histidine phosphatase superfamily (branch 1) MRB58_14315 PF02469 Fasciclin domain MRB58_14320 PF01264 Chorismate synthase MRB58_14325 PF01810 LysE type translocator MRB58_14330 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MRB58_14330 PF00925 GTP cyclohydrolase II MRB58_14340 PF13380 CoA binding domain MRB58_14350 PF02798 Glutathione S-transferase, N-terminal domain MRB58_14350 PF14497 Glutathione S-transferase, C-terminal domain MRB58_14355 PF00378 Enoyl-CoA hydratase/isomerase MRB58_14365 PF00572 Ribosomal protein L13 MRB58_14370 PF00380 Ribosomal protein S9/S16 MRB58_14380 PF02774 Semialdehyde dehydrogenase, dimerisation domain MRB58_14380 PF01118 Semialdehyde dehydrogenase, NAD binding domain MRB58_14390 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus MRB58_14390 PF00561 alpha/beta hydrolase fold MRB58_14400 PF00155 Aminotransferase class I and II MRB58_14410 PF00742 Homoserine dehydrogenase MRB58_14410 PF01842 ACT domain MRB58_14410 PF03447 Homoserine dehydrogenase, NAD binding domain MRB58_14420 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded MRB58_14430 PF01425 Amidase MRB58_14435 PF01368 DHH family MRB58_14435 PF17768 RecJ OB domain MRB58_14435 PF02272 DHHA1 domain MRB58_14445 PF00486 Transcriptional regulatory protein, C terminal MRB58_14445 PF00072 Response regulator receiver domain MRB58_14450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_14455 PF08264 Anticodon-binding domain of tRNA MRB58_14455 PF00133 tRNA synthetases class I (I, L, M and V) MRB58_14455 PF10458 Valyl tRNA synthetase tRNA binding arm MRB58_14460 PF01938 TRAM domain MRB58_14460 PF05958 tRNA (Uracil-5-)-methyltransferase MRB58_14465 PF09923 Uncharacterized protein conserved in bacteria (DUF2155) MRB58_14470 PF03588 Leucyl/phenylalanyl-tRNA protein transferase MRB58_14475 PF02785 Biotin carboxylase C-terminal domain MRB58_14475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRB58_14475 PF00289 Biotin carboxylase, N-terminal domain MRB58_14480 PF00364 Biotin-requiring enzyme MRB58_14490 PF10150 Ribonuclease E/G family MRB58_14490 PF00575 S1 RNA binding domain MRB58_14490 PF10150 Ribonuclease E/G family MRB58_14490 PF00575 S1 RNA binding domain MRB58_14490 PF12111 Polyribonucleotide phosphorylase C terminal MRB58_14490 PF12111 Polyribonucleotide phosphorylase C terminal MRB58_14495 PF01520 N-acetylmuramoyl-L-alanine amidase MRB58_14500 PF00905 Penicillin binding protein transpeptidase domain MRB58_14500 PF00912 Transglycosylase MRB58_14500 PF17092 Penicillin-binding protein OB-like domain MRB58_14510 PF00881 Nitroreductase family MRB58_14525 PF00005 ABC transporter MRB58_14525 PF12848 ABC transporter MRB58_14530 PF01272 Transcription elongation factor, GreA/GreB, C-term MRB58_14530 PF03449 Transcription elongation factor, N-terminal MRB58_14535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRB58_14535 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MRB58_14535 PF02142 MGS-like domain MRB58_14545 PF04228 Putative neutral zinc metallopeptidase MRB58_14550 PF10410 DnaB-helicase binding domain of primase MRB58_14550 PF01807 CHC2 zinc finger MRB58_14550 PF08278 DNA primase DnaG DnaB-binding MRB58_14550 PF08275 DNA primase catalytic core, N-terminal domain MRB58_14555 PF03979 Sigma-70 factor, region 1.1 MRB58_14555 PF04546 Sigma-70, non-essential region MRB58_14555 PF00140 Sigma-70 factor, region 1.2 MRB58_14555 PF04545 Sigma-70, region 4 MRB58_14555 PF04539 Sigma-70 region 3 MRB58_14555 PF04542 Sigma-70 region 2 MRB58_14565 PF00672 HAMP domain MRB58_14565 PF00211 Adenylate and Guanylate cyclase catalytic domain MRB58_14575 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_14575 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_14580 PF00941 FAD binding domain in molybdopterin dehydrogenase MRB58_14580 PF03450 CO dehydrogenase flavoprotein C-terminal domain MRB58_14585 PF10518 TAT (twin-arginine translocation) pathway signal sequence MRB58_14585 PF01799 [2Fe-2S] binding domain MRB58_14585 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_14600 PF05853 beta-keto acid cleavage enzyme MRB58_14605 PF00202 Aminotransferase class-III MRB58_14610 PF13091 PLD-like domain MRB58_14610 PF13396 Phospholipase_D-nuclease N-terminal MRB58_14615 PF01266 FAD dependent oxidoreductase MRB58_14620 PF01546 Peptidase family M20/M25/M40 MRB58_14625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_14625 PF00005 ABC transporter MRB58_14630 PF00005 ABC transporter MRB58_14630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_14635 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_14640 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_14645 PF02126 Phosphotriesterase family MRB58_14650 PF00202 Aminotransferase class-III MRB58_14655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_14660 PF07729 FCD domain MRB58_14660 PF00392 Bacterial regulatory proteins, gntR family MRB58_14665 PF07702 UTRA domain MRB58_14665 PF00392 Bacterial regulatory proteins, gntR family MRB58_14670 PF00155 Aminotransferase class I and II MRB58_14675 PF00682 HMGL-like MRB58_14680 PF02515 CoA-transferase family III MRB58_14690 PF00497 Bacterial extracellular solute-binding proteins, family 3 MRB58_14695 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_14700 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_14705 PF00005 ABC transporter MRB58_14710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_14710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_14715 PF17391 Urocanase N-terminal domain MRB58_14715 PF17392 Urocanase C-terminal domain MRB58_14715 PF01175 Urocanase Rossmann-like domain MRB58_14720 PF00221 Aromatic amino acid lyase MRB58_14725 PF01979 Amidohydrolase family MRB58_14735 PF00563 EAL domain MRB58_14735 PF00990 Diguanylate cyclase, GGDEF domain MRB58_14735 PF03707 Bacterial signalling protein N terminal repeat MRB58_14750 PF08447 PAS fold MRB58_14750 PF00563 EAL domain MRB58_14750 PF00990 Diguanylate cyclase, GGDEF domain MRB58_14750 PF08448 PAS fold MRB58_14755 PF01425 Amidase MRB58_14760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_14760 PF00005 ABC transporter MRB58_14765 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_14765 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_14770 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_14775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_14780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_14780 PF03466 LysR substrate binding domain MRB58_14785 PF01425 Amidase MRB58_14800 PF00857 Isochorismatase family MRB58_14805 PF03466 LysR substrate binding domain MRB58_14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_14810 PF12806 Acetyl-CoA dehydrogenase C-terminal like MRB58_14810 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_14810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_14810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_14825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_14825 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_14825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_14835 PF06426 Serine acetyltransferase, N-terminal MRB58_14835 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_14840 PF00561 alpha/beta hydrolase fold MRB58_14845 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_14855 PF02653 Branched-chain amino acid transport system / permease component MRB58_14860 PF02653 Branched-chain amino acid transport system / permease component MRB58_14865 PF00005 ABC transporter MRB58_14875 PF16868 NMT1-like family MRB58_14895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_14900 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_14905 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_14915 PF09382 RQC domain MRB58_14915 PF00271 Helicase conserved C-terminal domain MRB58_14915 PF00570 HRDC domain MRB58_14915 PF00270 DEAD/DEAH box helicase MRB58_14915 PF16124 RecQ zinc-binding MRB58_14925 PF00692 dUTPase MRB58_14945 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_14945 PF17862 AAA+ lid domain MRB58_14945 PF01434 Peptidase family M41 MRB58_14950 PF01258 Prokaryotic dksA/traR C4-type zinc finger MRB58_14955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_14955 PF08448 PAS fold MRB58_14955 PF13188 PAS domain MRB58_14955 PF00072 Response regulator receiver domain MRB58_14955 PF00512 His Kinase A (phospho-acceptor) domain MRB58_14960 PF00154 recA bacterial DNA recombination protein MRB58_14990 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MRB58_14990 PF01411 tRNA synthetases class II (A) MRB58_14990 PF02272 DHHA1 domain MRB58_14995 PF00005 ABC transporter MRB58_15000 PF00005 ABC transporter MRB58_15010 PF02653 Branched-chain amino acid transport system / permease component MRB58_15015 PF02653 Branched-chain amino acid transport system / permease component MRB58_15015 PF11862 Domain of unknown function (DUF3382) MRB58_15020 PF01370 NAD dependent epimerase/dehydratase family MRB58_15025 PF00149 Calcineurin-like phosphoesterase MRB58_15040 PF01969 Protein of unknown function DUF111 MRB58_15050 PF00731 AIR carboxylase MRB58_15055 PF00756 Putative esterase MRB58_15060 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_15060 PF00107 Zinc-binding dehydrogenase MRB58_15065 PF01047 MarR family MRB58_15070 PF01218 Coproporphyrinogen III oxidase MRB58_15075 PF00588 SpoU rRNA Methylase family MRB58_15080 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal MRB58_15080 PF00355 Rieske [2Fe-2S] domain MRB58_15085 PF00033 Cytochrome b/b6/petB MRB58_15085 PF00032 Cytochrome b(C-terminal)/b6/petD MRB58_15090 PF02167 Cytochrome C1 family MRB58_15090 PF00033 Cytochrome b/b6/petB MRB58_15090 PF00032 Cytochrome b(C-terminal)/b6/petD MRB58_15095 PF00591 Glycosyl transferase family, a/b domain MRB58_15095 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain MRB58_15095 PF02885 Glycosyl transferase family, helical bundle domain MRB58_15105 PF07687 Peptidase dimerisation domain MRB58_15105 PF01546 Peptidase family M20/M25/M40 MRB58_15115 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal MRB58_15115 PF14602 Hexapeptide repeat of succinyl-transferase MRB58_15115 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_15125 PF00696 Amino acid kinase family MRB58_15140 PF00501 AMP-binding enzyme MRB58_15140 PF13193 AMP-binding enzyme C-terminal domain MRB58_15150 PF08666 SAF domain MRB58_15150 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus MRB58_15160 PF03737 Aldolase/RraA MRB58_15170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_15170 PF03466 LysR substrate binding domain MRB58_15180 PF00920 Dehydratase family MRB58_15185 PF00392 Bacterial regulatory proteins, gntR family MRB58_15185 PF07729 FCD domain MRB58_15190 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRB58_15195 PF02566 OsmC-like protein MRB58_15200 PF01965 DJ-1/PfpI family MRB58_15205 PF01841 Transglutaminase-like superfamily MRB58_15205 PF08379 Bacterial transglutaminase-like N-terminal region MRB58_15210 PF04168 A predicted alpha-helical domain with a conserved ER motif. MRB58_15210 PF14403 Circularly permuted ATP-grasp type 2 MRB58_15220 PF03358 NADPH-dependent FMN reductase MRB58_15225 PF01638 HxlR-like helix-turn-helix MRB58_15230 PF13632 Glycosyl transferase family group 2 MRB58_15235 PF04349 Periplasmic glucan biosynthesis protein, MdoG MRB58_15240 PF00293 NUDIX domain MRB58_15245 PF01960 ArgJ family MRB58_15255 PF07517 SecA DEAD-like domain MRB58_15255 PF02810 SEC-C motif MRB58_15255 PF01043 SecA preprotein cross-linking domain MRB58_15255 PF07516 SecA Wing and Scaffold domain MRB58_15260 PF00211 Adenylate and Guanylate cyclase catalytic domain MRB58_15260 PF00072 Response regulator receiver domain MRB58_15290 PF00378 Enoyl-CoA hydratase/isomerase MRB58_15305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_15305 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_15305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_15310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_15310 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_15310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_15330 PF01804 Penicillin amidase MRB58_15340 PF00456 Transketolase, thiamine diphosphate binding domain MRB58_15340 PF17831 Pyruvate dehydrogenase E1 component middle domain MRB58_15345 PF03824 High-affinity nickel-transport protein MRB58_15350 PF01297 Zinc-uptake complex component A periplasmic MRB58_15355 PF00950 ABC 3 transport family MRB58_15360 PF00005 ABC transporter MRB58_15375 PF00005 ABC transporter MRB58_15385 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_15390 PF00005 ABC transporter MRB58_15400 PF04324 BFD-like [2Fe-2S] binding domain MRB58_15400 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MRB58_15400 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_15400 PF18267 Rubredoxin NAD+ reductase C-terminal domain MRB58_15400 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MRB58_15405 PF00355 Rieske [2Fe-2S] domain MRB58_15410 PF01568 Molydopterin dinucleotide binding domain MRB58_15410 PF04324 BFD-like [2Fe-2S] binding domain MRB58_15410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MRB58_15410 PF00384 Molybdopterin oxidoreductase MRB58_15415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MRB58_15415 PF10414 Sirohaem synthase dimerisation region MRB58_15415 PF14824 Sirohaem biosynthesis protein central MRB58_15420 PF01557 Fumarylacetoacetate (FAA) hydrolase family MRB58_15430 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_15440 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_15445 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_15445 PF13378 Enolase C-terminal domain-like MRB58_15450 PF03466 LysR substrate binding domain MRB58_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_15455 PF01513 ATP-NAD kinase MRB58_15460 PF10609 NUBPL iron-transfer P-loop NTPase MRB58_15465 PF07690 Major Facilitator Superfamily MRB58_15470 PF04055 Radical SAM superfamily MRB58_15470 PF06463 Molybdenum Cofactor Synthesis C MRB58_15495 PF00717 Peptidase S24-like MRB58_15495 PF01726 LexA DNA binding domain MRB58_15500 PF03453 MoeA N-terminal region (domain I and II) MRB58_15500 PF00994 Probable molybdopterin binding domain MRB58_15500 PF03454 MoeA C-terminal region (domain IV) MRB58_15505 PF01967 MoaC family MRB58_15515 PF00591 Glycosyl transferase family, a/b domain MRB58_15515 PF02885 Glycosyl transferase family, helical bundle domain MRB58_15525 PF00121 Triosephosphate isomerase MRB58_15545 PF01575 MaoC like domain MRB58_15550 PF00311 Phosphoenolpyruvate carboxylase MRB58_15560 PF00199 Catalase MRB58_15560 PF06628 Catalase-related immune-responsive MRB58_15565 PF00571 CBS domain MRB58_15565 PF01743 Poly A polymerase head domain MRB58_15590 PF03401 Tripartite tricarboxylate transporter family receptor MRB58_15600 PF01970 Tripartite tricarboxylate transporter TctA family MRB58_15605 PF05853 beta-keto acid cleavage enzyme MRB58_15610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MRB58_15610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MRB58_15615 PF00392 Bacterial regulatory proteins, gntR family MRB58_15615 PF07729 FCD domain MRB58_15625 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_15625 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_15640 PF01297 Zinc-uptake complex component A periplasmic MRB58_15645 PF00005 ABC transporter MRB58_15650 PF00950 ABC 3 transport family MRB58_15655 PF00950 ABC 3 transport family MRB58_15660 PF01928 CYTH domain MRB58_15665 PF00491 Arginase family MRB58_15670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRB58_15670 PF12729 Four helix bundle sensory module for signal transduction MRB58_15670 PF00672 HAMP domain MRB58_15690 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_15700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_15705 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_15705 PF01968 Hydantoinase/oxoprolinase MRB58_15720 PF00990 Diguanylate cyclase, GGDEF domain MRB58_15720 PF00563 EAL domain MRB58_15720 PF13188 PAS domain MRB58_15720 PF03707 Bacterial signalling protein N terminal repeat MRB58_15730 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_15730 PF00107 Zinc-binding dehydrogenase MRB58_15740 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_15750 PF07702 UTRA domain MRB58_15750 PF00392 Bacterial regulatory proteins, gntR family MRB58_15755 PF00732 GMC oxidoreductase MRB58_15755 PF05199 GMC oxidoreductase MRB58_15760 PF00378 Enoyl-CoA hydratase/isomerase MRB58_15765 PF03972 MmgE/PrpD family MRB58_15770 PF02515 CoA-transferase family III MRB58_15775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_15775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_15775 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_15780 PF01037 Lrp/AsnC ligand binding domain MRB58_15790 PF00676 Dehydrogenase E1 component MRB58_15790 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal MRB58_15795 PF02780 Transketolase, C-terminal domain MRB58_15795 PF02779 Transketolase, pyrimidine binding domain MRB58_15800 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MRB58_15800 PF00364 Biotin-requiring enzyme MRB58_15800 PF02817 e3 binding domain MRB58_15805 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_15805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRB58_15810 PF03459 TOBE domain MRB58_15810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_15830 PF02630 SCO1/SenC MRB58_15835 PF01728 FtsJ-like methyltransferase MRB58_15835 PF01479 S4 domain MRB58_15840 PF05958 tRNA (Uracil-5-)-methyltransferase MRB58_15845 PF01209 ubiE/COQ5 methyltransferase family MRB58_15855 PF01053 Cys/Met metabolism PLP-dependent enzyme MRB58_15860 PF02628 Cytochrome oxidase assembly protein MRB58_15890 PF00850 Histone deacetylase domain MRB58_15895 PF03481 Putative GTP-binding controlling metal-binding MRB58_15895 PF01300 Telomere recombination MRB58_15900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_15900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_15900 PF12806 Acetyl-CoA dehydrogenase C-terminal like MRB58_15900 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_15910 PF02590 Predicted SPOUT methyltransferase MRB58_15915 PF01551 Peptidase family M23 MRB58_15920 PF13180 PDZ domain MRB58_15920 PF03572 Peptidase family S41 MRB58_15935 PF00005 ABC transporter MRB58_15940 PF00005 ABC transporter MRB58_15950 PF02653 Branched-chain amino acid transport system / permease component MRB58_15960 PF01381 Helix-turn-helix MRB58_15960 PF09856 Predicted transcriptional regulator (DUF2083) MRB58_15960 PF06114 IrrE N-terminal-like domain MRB58_15965 PF00486 Transcriptional regulatory protein, C terminal MRB58_15965 PF00072 Response regulator receiver domain MRB58_15975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_15975 PF00512 His Kinase A (phospho-acceptor) domain MRB58_15975 PF00672 HAMP domain MRB58_15980 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MRB58_15980 PF01926 50S ribosome-binding GTPase MRB58_15985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRB58_15985 PF02203 Tar ligand binding domain homologue MRB58_15985 PF00672 HAMP domain MRB58_16005 PF03734 L,D-transpeptidase catalytic domain MRB58_16015 PF00672 HAMP domain MRB58_16015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_16015 PF00512 His Kinase A (phospho-acceptor) domain MRB58_16020 PF00486 Transcriptional regulatory protein, C terminal MRB58_16020 PF00072 Response regulator receiver domain MRB58_16025 PF12802 MarR family MRB58_16030 PF01063 Amino-transferase class IV MRB58_16045 PF01165 Ribosomal protein S21 MRB58_16050 PF02222 ATP-grasp domain MRB58_16050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MRB58_16055 PF00731 AIR carboxylase MRB58_16065 PF05193 Peptidase M16 inactive domain MRB58_16070 PF00675 Insulinase (Peptidase family M16) MRB58_16070 PF05193 Peptidase M16 inactive domain MRB58_16080 PF01252 Signal peptidase (SPase) II MRB58_16085 PF00133 tRNA synthetases class I (I, L, M and V) MRB58_16085 PF08264 Anticodon-binding domain of tRNA MRB58_16090 PF08241 Methyltransferase domain MRB58_16095 PF00462 Glutaredoxin MRB58_16095 PF08534 Redoxin MRB58_16100 PF02622 Uncharacterized ACR, COG1678 MRB58_16105 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_16105 PF14821 Threonine synthase N terminus MRB58_16110 PF05193 Peptidase M16 inactive domain MRB58_16110 PF00675 Insulinase (Peptidase family M16) MRB58_16115 PF13302 Acetyltransferase (GNAT) domain MRB58_16120 PF00990 Diguanylate cyclase, GGDEF domain MRB58_16120 PF03707 Bacterial signalling protein N terminal repeat MRB58_16120 PF00563 EAL domain MRB58_16125 PF00205 Thiamine pyrophosphate enzyme, central domain MRB58_16125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRB58_16125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRB58_16140 PF00707 Translation initiation factor IF-3, C-terminal domain MRB58_16140 PF05198 Translation initiation factor IF-3, N-terminal domain MRB58_16145 PF13439 Glycosyltransferase Family 4 MRB58_16145 PF00534 Glycosyl transferases group 1 MRB58_16160 PF00664 ABC transporter transmembrane region MRB58_16160 PF00005 ABC transporter MRB58_16175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRB58_16175 PF00205 Thiamine pyrophosphate enzyme, central domain MRB58_16175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRB58_16180 PF02594 Uncharacterised ACR, YggU family COG1872 MRB58_16190 PF01842 ACT domain MRB58_16190 PF10369 Small subunit of acetolactate synthase MRB58_16195 PF03352 Methyladenine glycosylase MRB58_16220 PF03450 CO dehydrogenase flavoprotein C-terminal domain MRB58_16220 PF00941 FAD binding domain in molybdopterin dehydrogenase MRB58_16225 PF00576 HIUase/Transthyretin family MRB58_16235 PF01475 Ferric uptake regulator family MRB58_16240 PF07977 FabA-like domain MRB58_16245 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_16245 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_16255 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MRB58_16260 PF05686 Glycosyl transferase family 90 MRB58_16265 PF05686 Glycosyl transferase family 90 MRB58_16270 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_16280 PF00290 Tryptophan synthase alpha chain MRB58_16285 PF01039 Carboxyl transferase domain MRB58_16290 PF08245 Mur ligase middle domain MRB58_16295 PF01343 Peptidase family S49 MRB58_16300 PF00216 Bacterial DNA-binding protein MRB58_16310 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_16310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRB58_16320 PF00364 Biotin-requiring enzyme MRB58_16320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MRB58_16320 PF02817 e3 binding domain MRB58_16325 PF16870 2-oxoglutarate dehydrogenase C-terminal MRB58_16325 PF02779 Transketolase, pyrimidine binding domain MRB58_16325 PF16078 2-oxoglutarate dehydrogenase N-terminus MRB58_16325 PF00676 Dehydrogenase E1 component MRB58_16335 PF00549 CoA-ligase MRB58_16335 PF02629 CoA binding domain MRB58_16340 PF04116 Fatty acid hydroxylase superfamily MRB58_16345 PF00487 Fatty acid desaturase MRB58_16360 PF00027 Cyclic nucleotide-binding domain MRB58_16360 PF13545 Crp-like helix-turn-helix domain MRB58_16380 PF08534 Redoxin MRB58_16390 PF01578 Cytochrome C assembly protein MRB58_16395 PF03379 CcmB protein MRB58_16400 PF00005 ABC transporter MRB58_16405 PF00330 Aconitase family (aconitate hydratase) MRB58_16405 PF00694 Aconitase C-terminal domain MRB58_16445 PF08442 ATP-grasp domain MRB58_16445 PF00549 CoA-ligase MRB58_16460 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MRB58_16460 PF00056 lactate/malate dehydrogenase, NAD binding domain MRB58_16465 PF03969 AFG1-like ATPase MRB58_16470 PF00378 Enoyl-CoA hydratase/isomerase MRB58_16475 PF01649 Ribosomal protein S20 MRB58_16480 PF00581 Rhodanese-like domain MRB58_16485 PF00308 Bacterial dnaA protein MRB58_16485 PF08299 Bacterial dnaA protein helix-turn-helix MRB58_16485 PF11638 DnaA N-terminal domain MRB58_16490 PF00712 DNA polymerase III beta subunit, N-terminal domain MRB58_16490 PF02767 DNA polymerase III beta subunit, central domain MRB58_16490 PF02768 DNA polymerase III beta subunit, C-terminal domain MRB58_16495 PF02463 RecF/RecN/SMC N terminal domain MRB58_16505 PF01593 Flavin containing amine oxidoreductase MRB58_16510 PF00849 RNA pseudouridylate synthase MRB58_16520 PF01476 LysM domain MRB58_16520 PF03734 L,D-transpeptidase catalytic domain MRB58_16525 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_16525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_16525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_16530 PF00106 short chain dehydrogenase MRB58_16540 PF00027 Cyclic nucleotide-binding domain MRB58_16540 PF13302 Acetyltransferase (GNAT) domain MRB58_16545 PF00005 ABC transporter MRB58_16545 PF00664 ABC transporter transmembrane region MRB58_16555 PF00534 Glycosyl transferases group 1 MRB58_16560 PF13439 Glycosyltransferase Family 4 MRB58_16560 PF00534 Glycosyl transferases group 1 MRB58_16565 PF03033 Glycosyltransferase family 28 N-terminal domain MRB58_16565 PF04101 Glycosyltransferase family 28 C-terminal domain MRB58_16575 PF03652 Holliday junction resolvase MRB58_16580 PF06071 Protein of unknown function (DUF933) MRB58_16580 PF01926 50S ribosome-binding GTPase MRB58_16585 PF01195 Peptidyl-tRNA hydrolase MRB58_16590 PF14693 Ribosomal protein TL5, C-terminal domain MRB58_16590 PF01386 Ribosomal L25p family MRB58_16595 PF00989 PAS fold MRB58_16595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_16595 PF00512 His Kinase A (phospho-acceptor) domain MRB58_16600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRB58_16600 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_16605 PF09335 SNARE associated Golgi protein MRB58_16610 PF00468 Ribosomal protein L34 MRB58_16615 PF00825 Ribonuclease P MRB58_16620 PF02096 60Kd inner membrane protein MRB58_16620 PF14849 YidC periplasmic domain MRB58_16625 PF01926 50S ribosome-binding GTPase MRB58_16650 PF00005 ABC transporter MRB58_16665 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MRB58_16665 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MRB58_16665 PF06827 Zinc finger found in FPG and IleRS MRB58_16670 PF01209 ubiE/COQ5 methyltransferase family MRB58_16675 PF03109 ABC1 family MRB58_16680 PF00171 Aldehyde dehydrogenase family MRB58_16685 PF03466 LysR substrate binding domain MRB58_16685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_16695 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_16700 PF08501 Shikimate dehydrogenase substrate binding domain MRB58_16705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MRB58_16705 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MRB58_16710 PF01220 Dehydroquinase class II MRB58_16715 PF07729 FCD domain MRB58_16715 PF00392 Bacterial regulatory proteins, gntR family MRB58_16720 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_16730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_16735 PF00884 Sulfatase MRB58_16735 PF16385 Domain of unknown function MRB58_16740 PF03976 Polyphosphate kinase 2 (PPK2) MRB58_16745 PF07726 ATPase family associated with various cellular activities (AAA) MRB58_16745 PF17863 AAA lid domain MRB58_16750 PF01882 Protein of unknown function DUF58 MRB58_16765 PF07584 Aerotolerance regulator N-terminal MRB58_16765 PF13519 von Willebrand factor type A domain MRB58_16780 PF02028 BCCT, betaine/carnitine/choline family transporter MRB58_16790 PF00501 AMP-binding enzyme MRB58_16790 PF13193 AMP-binding enzyme C-terminal domain MRB58_16795 PF06276 Ferric iron reductase FhuF-like transporter MRB58_16795 PF04183 IucA / IucC family MRB58_16800 PF07715 TonB-dependent Receptor Plug Domain MRB58_16800 PF00593 TonB dependent receptor MRB58_16820 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_16835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_16835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_16840 PF02615 Malate/L-lactate dehydrogenase MRB58_16845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRB58_16845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRB58_16850 PF01970 Tripartite tricarboxylate transporter TctA family MRB58_16860 PF03401 Tripartite tricarboxylate transporter family receptor MRB58_16865 PF03737 Aldolase/RraA MRB58_16870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_16870 PF03466 LysR substrate binding domain MRB58_16875 PF07729 FCD domain MRB58_16875 PF00392 Bacterial regulatory proteins, gntR family MRB58_16880 PF03401 Tripartite tricarboxylate transporter family receptor MRB58_16895 PF00701 Dihydrodipicolinate synthetase family MRB58_16900 PF00360 Phytochrome region MRB58_16900 PF00512 His Kinase A (phospho-acceptor) domain MRB58_16900 PF08446 PAS fold MRB58_16900 PF01590 GAF domain MRB58_16900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_16905 PF00487 Fatty acid desaturase MRB58_16920 PF00313 'Cold-shock' DNA-binding domain MRB58_16935 PF14542 GCN5-related N-acetyl-transferase MRB58_16940 PF02678 Pirin MRB58_16940 PF05726 Pirin C-terminal cupin domain MRB58_16945 PF02678 Pirin MRB58_16945 PF05726 Pirin C-terminal cupin domain MRB58_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_16950 PF03466 LysR substrate binding domain MRB58_16965 PF03797 Autotransporter beta-domain MRB58_16980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MRB58_16985 PF02224 Cytidylate kinase MRB58_16990 PF00575 S1 RNA binding domain MRB58_17005 PF04542 Sigma-70 region 2 MRB58_17005 PF04545 Sigma-70, region 4 MRB58_17005 PF00140 Sigma-70 factor, region 1.2 MRB58_17010 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_17015 PF00005 ABC transporter MRB58_17015 PF03459 TOBE domain MRB58_17020 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MRB58_17020 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MRB58_17025 PF00476 DNA polymerase family A MRB58_17025 PF01612 3'-5' exonuclease MRB58_17025 PF01367 5'-3' exonuclease, C-terminal SAM fold MRB58_17025 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MRB58_17030 PF00905 Penicillin binding protein transpeptidase domain MRB58_17030 PF00912 Transglycosylase MRB58_17035 PF00583 Acetyltransferase (GNAT) family MRB58_17040 PF00459 Inositol monophosphatase family MRB58_17050 PF00072 Response regulator receiver domain MRB58_17065 PF01968 Hydantoinase/oxoprolinase MRB58_17065 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_17075 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment MRB58_17085 PF02660 Glycerol-3-phosphate acyltransferase MRB58_17090 PF17782 DprA winged helix domain MRB58_17090 PF02481 DNA recombination-mediator protein A MRB58_17115 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ MRB58_17120 PF04166 Pyridoxal phosphate biosynthetic protein PdxA MRB58_17125 PF00585 C-terminal regulatory domain of Threonine dehydratase MRB58_17125 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_17135 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MRB58_17140 PF00106 short chain dehydrogenase MRB58_17145 PF00313 'Cold-shock' DNA-binding domain MRB58_17150 PF00491 Arginase family MRB58_17155 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MRB58_17155 PF07685 CobB/CobQ-like glutamine amidotransferase domain MRB58_17165 PF01888 CbiD MRB58_17170 PF02571 Precorrin-6x reductase CbiJ/CobK MRB58_17180 PF01979 Amidohydrolase family MRB58_17185 PF02583 Metal-sensitive transcriptional repressor MRB58_17190 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MRB58_17190 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRB58_17190 PF03129 Anticodon binding domain MRB58_17195 PF00296 Luciferase-like monooxygenase MRB58_17200 PF01774 UreD urease accessory protein MRB58_17205 PF00547 Urease, gamma subunit MRB58_17210 PF06906 Protein of unknown function (DUF1272) MRB58_17215 PF00699 Urease beta subunit MRB58_17220 PF01494 FAD binding domain MRB58_17225 PF01580 FtsK/SpoIIIE family MRB58_17225 PF09397 Ftsk gamma domain MRB58_17225 PF17854 FtsK alpha domain MRB58_17225 PF13491 4TM region of DNA translocase FtsK/SpoIIIE MRB58_17240 PF00155 Aminotransferase class I and II MRB58_17250 PF00183 Hsp90 protein MRB58_17275 PF00814 Glycoprotease family MRB58_17290 PF01938 TRAM domain MRB58_17290 PF00919 Uncharacterized protein family UPF0004 MRB58_17290 PF04055 Radical SAM superfamily MRB58_17295 PF02562 PhoH-like protein MRB58_17300 PF02130 Uncharacterized protein family UPF0054 MRB58_17305 PF00571 CBS domain MRB58_17305 PF03471 Transporter associated domain MRB58_17310 PF00795 Carbon-nitrogen hydrolase MRB58_17315 PF01381 Helix-turn-helix MRB58_17320 PF02773 S-adenosylmethionine synthetase, C-terminal domain MRB58_17320 PF00438 S-adenosylmethionine synthetase, N-terminal domain MRB58_17320 PF02772 S-adenosylmethionine synthetase, central domain MRB58_17325 PF02390 Putative methyltransferase MRB58_17335 PF03949 Malic enzyme, NAD binding domain MRB58_17335 PF00390 Malic enzyme, N-terminal domain MRB58_17335 PF01515 Phosphate acetyl/butaryl transferase MRB58_17340 PF08269 Cache domain MRB58_17340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRB58_17345 PF05190 MutS family domain IV MRB58_17345 PF05192 MutS domain III MRB58_17345 PF00488 MutS domain V MRB58_17345 PF05188 MutS domain II MRB58_17345 PF01624 MutS domain I MRB58_17355 PF01113 Dihydrodipicolinate reductase, N-terminus MRB58_17355 PF05173 Dihydrodipicolinate reductase, C-terminus MRB58_17365 PF02595 Glycerate kinase family MRB58_17375 PF01925 Sulfite exporter TauE/SafE MRB58_17385 PF00155 Aminotransferase class I and II MRB58_17395 PF02381 MraZ protein, putative antitoxin-like MRB58_17400 PF01795 MraW methylase family MRB58_17410 PF00905 Penicillin binding protein transpeptidase domain MRB58_17410 PF03717 Penicillin-binding Protein dimerisation domain MRB58_17415 PF08245 Mur ligase middle domain MRB58_17415 PF02875 Mur ligase family, glutamate ligase domain MRB58_17415 PF01225 Mur ligase family, catalytic domain MRB58_17420 PF01225 Mur ligase family, catalytic domain MRB58_17420 PF02875 Mur ligase family, glutamate ligase domain MRB58_17420 PF08245 Mur ligase middle domain MRB58_17425 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MRB58_17425 PF00953 Glycosyl transferase family 4 MRB58_17430 PF08245 Mur ligase middle domain MRB58_17435 PF01098 Cell cycle protein MRB58_17440 PF04101 Glycosyltransferase family 28 C-terminal domain MRB58_17440 PF03033 Glycosyltransferase family 28 N-terminal domain MRB58_17445 PF01225 Mur ligase family, catalytic domain MRB58_17445 PF02875 Mur ligase family, glutamate ligase domain MRB58_17445 PF08245 Mur ligase middle domain MRB58_17450 PF01565 FAD binding domain MRB58_17450 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MRB58_17455 PF07478 D-ala D-ala ligase C-terminus MRB58_17455 PF01820 D-ala D-ala ligase N-terminus MRB58_17460 PF03799 Cell division protein FtsQ MRB58_17460 PF08478 POTRA domain, FtsQ-type MRB58_17465 PF02491 SHS2 domain inserted in FTSA MRB58_17470 PF00091 Tubulin/FtsZ family, GTPase domain MRB58_17470 PF12327 FtsZ family, C-terminal domain MRB58_17470 PF00091 Tubulin/FtsZ family, GTPase domain MRB58_17470 PF12327 FtsZ family, C-terminal domain MRB58_17475 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase MRB58_17480 PF13525 Outer membrane lipoprotein MRB58_17485 PF02463 RecF/RecN/SMC N terminal domain MRB58_17490 PF00533 BRCA1 C Terminus (BRCT) domain MRB58_17490 PF01653 NAD-dependent DNA ligase adenylation domain MRB58_17490 PF03120 NAD-dependent DNA ligase OB-fold domain MRB58_17490 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MRB58_17490 PF12826 Helix-hairpin-helix motif MRB58_17500 PF02653 Branched-chain amino acid transport system / permease component MRB58_17500 PF11862 Domain of unknown function (DUF3382) MRB58_17505 PF02653 Branched-chain amino acid transport system / permease component MRB58_17510 PF00005 ABC transporter MRB58_17515 PF00005 ABC transporter MRB58_17515 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_17520 PF13193 AMP-binding enzyme C-terminal domain MRB58_17520 PF00501 AMP-binding enzyme MRB58_17535 PF08241 Methyltransferase domain MRB58_17555 PF00293 NUDIX domain MRB58_17560 PF01595 Cyclin M transmembrane N-terminal domain MRB58_17560 PF03471 Transporter associated domain MRB58_17560 PF00571 CBS domain MRB58_17565 PF01761 3-dehydroquinate synthase MRB58_17570 PF01202 Shikimate kinase MRB58_17575 PF00589 Phage integrase family MRB58_17575 PF02899 Phage integrase, N-terminal SAM-like domain MRB58_17580 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MRB58_17585 PF03734 L,D-transpeptidase catalytic domain MRB58_17595 PF09339 IclR helix-turn-helix domain MRB58_17595 PF01614 Bacterial transcriptional regulator MRB58_17600 PF00582 Universal stress protein family MRB58_17605 PF14765 Polyketide synthase dehydratase MRB58_17605 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_17605 PF00698 Acyl transferase domain MRB58_17605 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_17605 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_17605 PF09277 Erythronolide synthase, docking MRB58_17605 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_17605 PF08990 Erythronolide synthase docking MRB58_17605 PF08659 KR domain MRB58_17605 PF00550 Phosphopantetheine attachment site MRB58_17610 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_17615 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_17620 PF00106 short chain dehydrogenase MRB58_17630 PF13419 Haloacid dehalogenase-like hydrolase MRB58_17640 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_17640 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MRB58_17650 PF01474 Class-II DAHP synthetase family MRB58_17655 PF07690 Major Facilitator Superfamily MRB58_17660 PF13411 MerR HTH family regulatory protein MRB58_17665 PF00795 Carbon-nitrogen hydrolase MRB58_17665 PF02540 NAD synthase MRB58_17670 PF00749 tRNA synthetases class I (E and Q), catalytic domain MRB58_17695 PF01476 LysM domain MRB58_17695 PF17969 L,D-transpeptidase C-terminal domain MRB58_17695 PF03734 L,D-transpeptidase catalytic domain MRB58_17720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MRB58_17720 PF00364 Biotin-requiring enzyme MRB58_17720 PF02817 e3 binding domain MRB58_17730 PF00708 Acylphosphatase MRB58_17735 PF00364 Biotin-requiring enzyme MRB58_17735 PF00289 Biotin carboxylase, N-terminal domain MRB58_17735 PF02785 Biotin carboxylase C-terminal domain MRB58_17735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRB58_17735 PF18140 Propionyl-coenzyme A carboxylase BT domain MRB58_17745 PF04172 LrgB-like family MRB58_17765 PF01039 Carboxyl transferase domain MRB58_17775 PF13419 Haloacid dehalogenase-like hydrolase MRB58_17780 PF00005 ABC transporter MRB58_17780 PF00664 ABC transporter transmembrane region MRB58_17790 PF02563 Polysaccharide biosynthesis/export protein MRB58_17795 PF03167 Uracil DNA glycosylase superfamily MRB58_17805 PF01192 RNA polymerase Rpb6 MRB58_17810 PF13291 ACT domain MRB58_17810 PF04607 Region found in RelA / SpoT proteins MRB58_17810 PF02824 TGS domain MRB58_17820 PF01648 4'-phosphopantetheinyl transferase superfamily MRB58_17825 PF10502 Signal peptidase, peptidase S26 MRB58_17830 PF14622 Ribonuclease-III-like MRB58_17830 PF00035 Double-stranded RNA binding motif MRB58_17835 PF01926 50S ribosome-binding GTPase MRB58_17835 PF07650 KH domain MRB58_17840 PF11967 Recombination protein O N terminal MRB58_17840 PF02565 Recombination protein O C terminal MRB58_17850 PF02617 ATP-dependent Clp protease adaptor protein ClpS MRB58_17855 PF00271 Helicase conserved C-terminal domain MRB58_17855 PF04851 Type III restriction enzyme, res subunit MRB58_17855 PF02151 UvrB/uvrC motif MRB58_17855 PF12344 Ultra-violet resistance protein B MRB58_17855 PF17757 UvrB interaction domain MRB58_17870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_17870 PF03466 LysR substrate binding domain MRB58_17875 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_17885 PF01037 Lrp/AsnC ligand binding domain MRB58_17905 PF01070 FMN-dependent dehydrogenase MRB58_17910 PF16363 GDP-mannose 4,6 dehydratase MRB58_17920 PF02754 Cysteine-rich domain MRB58_17920 PF13183 4Fe-4S dicluster domain MRB58_17930 PF01565 FAD binding domain MRB58_17940 PF02913 FAD linked oxidases, C-terminal domain MRB58_17940 PF01565 FAD binding domain MRB58_17945 PF00891 O-methyltransferase domain MRB58_17950 PF07690 Major Facilitator Superfamily MRB58_17955 PF03030 Inorganic H+ pyrophosphatase MRB58_17985 PF02504 Fatty acid synthesis protein MRB58_17990 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MRB58_17990 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MRB58_17995 PF00216 Bacterial DNA-binding protein MRB58_18020 PF02780 Transketolase, C-terminal domain MRB58_18020 PF00456 Transketolase, thiamine diphosphate binding domain MRB58_18020 PF02779 Transketolase, pyrimidine binding domain MRB58_18030 PF00694 Aconitase C-terminal domain MRB58_18045 PF05088 Bacterial NAD-glutamate dehydrogenase MRB58_18050 PF01555 DNA methylase MRB58_18050 PF18755 Restriction Enzyme Adenine Methylase Associated MRB58_18055 PF02463 RecF/RecN/SMC N terminal domain MRB58_18070 PF00730 HhH-GPD superfamily base excision DNA repair protein MRB58_18070 PF14815 NUDIX domain MRB58_18080 PF01810 LysE type translocator MRB58_18095 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MRB58_18095 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MRB58_18115 PF00248 Aldo/keto reductase family MRB58_18130 PF00162 Phosphoglycerate kinase MRB58_18135 PF00274 Fructose-bisphosphate aldolase class-I MRB58_18150 PF01132 Elongation factor P (EF-P) OB domain MRB58_18150 PF08207 Elongation factor P (EF-P) KOW-like domain MRB58_18150 PF09285 Elongation factor P, C-terminal MRB58_18160 PF00459 Inositol monophosphatase family MRB58_18170 PF13677 Membrane MotB of proton-channel complex MotA/MotB MRB58_18170 PF00691 OmpA family MRB58_18175 PF00893 Small Multidrug Resistance protein MRB58_18180 PF00664 ABC transporter transmembrane region MRB58_18180 PF00005 ABC transporter MRB58_18185 PF01197 Ribosomal protein L31 MRB58_18195 PF16177 Acetyl-coenzyme A synthetase N-terminus MRB58_18195 PF00501 AMP-binding enzyme MRB58_18195 PF13193 AMP-binding enzyme C-terminal domain MRB58_18200 PF01546 Peptidase family M20/M25/M40 MRB58_18200 PF07687 Peptidase dimerisation domain MRB58_18205 PF01966 HD domain MRB58_18215 PF00881 Nitroreductase family MRB58_18230 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_18250 PF01502 Phosphoribosyl-AMP cyclohydrolase MRB58_18260 PF01809 Putative membrane protein insertion efficiency factor MRB58_18270 PF03989 DNA gyrase C-terminal domain, beta-propeller MRB58_18270 PF00521 DNA gyrase/topoisomerase IV, subunit A MRB58_18275 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MRB58_18275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MRB58_18280 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_18280 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_18280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_18285 PF00171 Aldehyde dehydrogenase family MRB58_18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_18290 PF03466 LysR substrate binding domain MRB58_18295 PF07690 Major Facilitator Superfamily MRB58_18300 PF01979 Amidohydrolase family MRB58_18310 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_18310 PF13378 Enolase C-terminal domain-like MRB58_18320 PF02515 CoA-transferase family III MRB58_18325 PF00378 Enoyl-CoA hydratase/isomerase MRB58_18330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_18330 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_18340 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_18345 PF00266 Aminotransferase class-V MRB58_18350 PF02913 FAD linked oxidases, C-terminal domain MRB58_18350 PF01565 FAD binding domain MRB58_18350 PF13183 4Fe-4S dicluster domain MRB58_18355 PF00392 Bacterial regulatory proteins, gntR family MRB58_18355 PF07729 FCD domain MRB58_18375 PF04377 Arginine-tRNA-protein transferase, C terminus MRB58_18375 PF04376 Arginine-tRNA-protein transferase, N terminus MRB58_18380 PF03600 Citrate transporter MRB58_18380 PF02080 TrkA-C domain MRB58_18385 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_18385 PF13291 ACT domain MRB58_18390 PF00490 Delta-aminolevulinic acid dehydratase MRB58_18400 PF00378 Enoyl-CoA hydratase/isomerase MRB58_18410 PF12802 MarR family MRB58_18415 PF03734 L,D-transpeptidase catalytic domain MRB58_18415 PF01471 Putative peptidoglycan binding domain MRB58_18420 PF00464 Serine hydroxymethyltransferase MRB58_18425 PF03477 ATP cone domain MRB58_18435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MRB58_18435 PF01872 RibD C-terminal domain MRB58_18440 PF00677 Lumazine binding domain MRB58_18445 PF00885 6,7-dimethyl-8-ribityllumazine synthase MRB58_18450 PF01029 NusB family MRB58_18455 PF00561 alpha/beta hydrolase fold MRB58_18460 PF00586 AIR synthase related protein, N-terminal domain MRB58_18460 PF02769 AIR synthase related protein, C-terminal domain MRB58_18475 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MRB58_18475 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MRB58_18480 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch MRB58_18485 PF02233 NAD(P) transhydrogenase beta subunit MRB58_18490 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_18490 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_18490 PF01842 ACT domain MRB58_18495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRB58_18495 PF12729 Four helix bundle sensory module for signal transduction MRB58_18495 PF00672 HAMP domain MRB58_18505 PF00583 Acetyltransferase (GNAT) family MRB58_18525 PF02514 CobN/Magnesium Chelatase MRB58_18530 PF07683 Cobalamin synthesis protein cobW C-terminal domain MRB58_18530 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRB58_18535 PF00378 Enoyl-CoA hydratase/isomerase MRB58_18540 PF02515 CoA-transferase family III MRB58_18545 PF00733 Asparagine synthase MRB58_18545 PF13537 Glutamine amidotransferase domain MRB58_18555 PF05343 M42 glutamyl aminopeptidase MRB58_18560 PF01612 3'-5' exonuclease MRB58_18560 PF00570 HRDC domain MRB58_18565 PF00156 Phosphoribosyl transferase domain MRB58_18585 PF03692 Putative zinc- or iron-chelating domain MRB58_18600 PF04860 Phage portal protein MRB58_18700 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_18715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_18715 PF03466 LysR substrate binding domain MRB58_18720 PF00999 Sodium/hydrogen exchanger family MRB58_18735 PF10090 Histidine phosphotransferase C-terminal domain MRB58_18740 PF00486 Transcriptional regulatory protein, C terminal MRB58_18740 PF00072 Response regulator receiver domain MRB58_18750 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MRB58_18750 PF14572 Phosphoribosyl synthetase-associated domain MRB58_18765 PF02578 Multi-copper polyphenol oxidoreductase laccase MRB58_18775 PF01790 Prolipoprotein diacylglyceryl transferase MRB58_18790 PF14748 Pyrroline-5-carboxylate reductase dimerisation MRB58_18790 PF03807 NADP oxidoreductase coenzyme F420-dependent MRB58_18800 PF01588 Putative tRNA binding domain MRB58_18805 PF00857 Isochorismatase family MRB58_18810 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_18810 PF00175 Oxidoreductase NAD-binding domain MRB58_18810 PF00970 Oxidoreductase FAD-binding domain MRB58_18825 PF13537 Glutamine amidotransferase domain MRB58_18825 PF00156 Phosphoribosyl transferase domain MRB58_18835 PF06745 KaiC MRB58_18835 PF18073 Rubredoxin metal binding domain MRB58_18840 PF01168 Alanine racemase, N-terminal domain MRB58_18840 PF00842 Alanine racemase, C-terminal domain MRB58_18850 PF00772 DnaB-like helicase N terminal domain MRB58_18850 PF03796 DnaB-like helicase C terminal domain MRB58_18865 PF03948 Ribosomal protein L9, C-terminal domain MRB58_18865 PF01281 Ribosomal protein L9, N-terminal domain MRB58_18870 PF01084 Ribosomal protein S18 MRB58_18875 PF01250 Ribosomal protein S6 MRB58_18880 PF00698 Acyl transferase domain MRB58_18890 PF00550 Phosphopantetheine attachment site MRB58_18895 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_18895 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_18900 PF02618 YceG-like family MRB58_18905 PF08340 Domain of unknown function (DUF1732) MRB58_18905 PF03755 YicC-like family, N-terminal region MRB58_18910 PF00625 Guanylate kinase MRB58_18925 PF01493 GXGXG motif MRB58_18930 PF01645 Conserved region in glutamate synthase MRB58_18935 PF00120 Glutamine synthetase, catalytic domain MRB58_18940 PF01266 FAD dependent oxidoreductase MRB58_18945 PF01425 Amidase MRB58_18950 PF13382 Adenine deaminase C-terminal domain MRB58_18950 PF01979 Amidohydrolase family MRB58_18955 PF00005 ABC transporter MRB58_18965 PF13458 Periplasmic binding protein MRB58_18970 PF17938 Tetracyclin repressor-like, C-terminal domain MRB58_18970 PF00440 Bacterial regulatory proteins, tetR family MRB58_18980 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal MRB58_18980 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal MRB58_18985 PF01613 Flavin reductase like domain MRB58_18995 PF00005 ABC transporter MRB58_19000 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_19000 PF00005 ABC transporter MRB58_19010 PF02653 Branched-chain amino acid transport system / permease component MRB58_19040 PF10518 TAT (twin-arginine translocation) pathway signal sequence MRB58_19040 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_19040 PF01799 [2Fe-2S] binding domain MRB58_19045 PF00941 FAD binding domain in molybdopterin dehydrogenase MRB58_19045 PF03450 CO dehydrogenase flavoprotein C-terminal domain MRB58_19050 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_19050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_19055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_19060 PF03992 Antibiotic biosynthesis monooxygenase MRB58_19065 PF08548 Peptidase M10 serralysin C terminal MRB58_19065 PF00413 Matrixin MRB58_19065 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) MRB58_19070 PF07715 TonB-dependent Receptor Plug Domain MRB58_19070 PF00593 TonB dependent receptor MRB58_19090 PF00072 Response regulator receiver domain MRB58_19090 PF00486 Transcriptional regulatory protein, C terminal MRB58_19095 PF00672 HAMP domain MRB58_19095 PF00512 His Kinase A (phospho-acceptor) domain MRB58_19095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_19100 PF17755 UvrA DNA-binding domain MRB58_19100 PF17760 UvrA interaction domain MRB58_19110 PF00436 Single-strand binding protein family MRB58_19120 PF03989 DNA gyrase C-terminal domain, beta-propeller MRB58_19120 PF00521 DNA gyrase/topoisomerase IV, subunit A MRB58_19135 PF01467 Cytidylyltransferase-like MRB58_19140 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MRB58_19145 PF02547 Queuosine biosynthesis protein MRB58_19150 PF01702 Queuine tRNA-ribosyltransferase MRB58_19160 PF00113 Enolase, C-terminal TIM barrel domain MRB58_19160 PF03952 Enolase, N-terminal domain MRB58_19165 PF00534 Glycosyl transferases group 1 MRB58_19165 PF13439 Glycosyltransferase Family 4 MRB58_19170 PF00535 Glycosyl transferase family 2 MRB58_19180 PF00483 Nucleotidyl transferase MRB58_19190 PF09663 Amidohydrolase ring-opening protein (Amido_AtzD_TrzD) MRB58_19195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_19195 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_19200 PF01979 Amidohydrolase family MRB58_19205 PF01979 Amidohydrolase family MRB58_19225 PF00679 Elongation factor G C-terminus MRB58_19225 PF00009 Elongation factor Tu GTP binding domain MRB58_19225 PF03144 Elongation factor Tu domain 2 MRB58_19230 PF01958 Domain of unknown function DUF108 MRB58_19230 PF03447 Homoserine dehydrogenase, NAD binding domain MRB58_19235 PF03466 LysR substrate binding domain MRB58_19235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_19240 PF00857 Isochorismatase family MRB58_19255 PF00005 ABC transporter MRB58_19265 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_19270 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component MRB58_19275 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_19300 PF02881 SRP54-type protein, helical bundle domain MRB58_19300 PF00448 SRP54-type protein, GTPase domain MRB58_19305 PF04055 Radical SAM superfamily MRB58_19305 PF00919 Uncharacterized protein family UPF0004 MRB58_19315 PF00719 Inorganic pyrophosphatase MRB58_19330 PF09335 SNARE associated Golgi protein MRB58_19335 PF13409 Glutathione S-transferase, N-terminal domain MRB58_19340 PF00211 Adenylate and Guanylate cyclase catalytic domain MRB58_19345 PF05050 Methyltransferase FkbM domain MRB58_19350 PF16653 Saccharopine dehydrogenase C-terminal domain MRB58_19350 PF03435 Saccharopine dehydrogenase NADP binding domain MRB58_19375 PF14403 Circularly permuted ATP-grasp type 2 MRB58_19380 PF03741 Integral membrane protein TerC family MRB58_19390 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MRB58_19390 PF00384 Molybdopterin oxidoreductase MRB58_19390 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal MRB58_19400 PF00146 NADH dehydrogenase MRB58_19415 PF12838 4Fe-4S dicluster domain MRB58_19430 PF00501 AMP-binding enzyme MRB58_19430 PF13193 AMP-binding enzyme C-terminal domain MRB58_19435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_19435 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_19435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_19440 PF00378 Enoyl-CoA hydratase/isomerase MRB58_19455 PF01494 FAD binding domain MRB58_19465 PF00005 ABC transporter MRB58_19470 PF00005 ABC transporter MRB58_19480 PF02653 Branched-chain amino acid transport system / permease component MRB58_19490 PF01494 FAD binding domain MRB58_19495 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_19510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MRB58_19520 PF00294 pfkB family carbohydrate kinase MRB58_19525 PF14765 Polyketide synthase dehydratase MRB58_19525 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_19525 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_19525 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_19525 PF08659 KR domain MRB58_19525 PF00698 Acyl transferase domain MRB58_19525 PF00550 Phosphopantetheine attachment site MRB58_19525 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_19530 PF00155 Aminotransferase class I and II MRB58_19535 PF00106 short chain dehydrogenase MRB58_19540 PF01668 SmpB protein MRB58_19550 PF00701 Dihydrodipicolinate synthetase family MRB58_19555 PF01464 Transglycosylase SLT domain MRB58_19555 PF14718 Soluble lytic murein transglycosylase L domain MRB58_19560 PF12697 Alpha/beta hydrolase family MRB58_19565 PF13581 Histidine kinase-like ATPase domain MRB58_19565 PF13426 PAS domain MRB58_19565 PF07568 Histidine kinase MRB58_19570 PF01134 Glucose inhibited division protein A MRB58_19585 PF01546 Peptidase family M20/M25/M40 MRB58_19590 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MRB58_19590 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MRB58_19600 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MRB58_19600 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MRB58_19605 PF00873 AcrB/AcrD/AcrF family MRB58_19610 PF07733 Bacterial DNA polymerase III alpha NTPase domain MRB58_19610 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MRB58_19610 PF14579 Helix-hairpin-helix motif MRB58_19610 PF02811 PHP domain MRB58_19615 PF00005 ABC transporter MRB58_19620 PF02687 FtsX-like permease family MRB58_19620 PF12704 MacB-like periplasmic core domain MRB58_19625 PF03129 Anticodon binding domain MRB58_19625 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MRB58_19650 PF13407 Periplasmic binding protein domain MRB58_19655 PF00005 ABC transporter MRB58_19655 PF08402 TOBE domain MRB58_19660 PF13416 Bacterial extracellular solute-binding protein MRB58_19665 PF00202 Aminotransferase class-III MRB58_19675 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_19675 PF00107 Zinc-binding dehydrogenase MRB58_19680 PF02515 CoA-transferase family III MRB58_19685 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_19690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRB58_19695 PF04209 homogentisate 1,2-dioxygenase MRB58_19700 PF01557 Fumarylacetoacetate (FAA) hydrolase family MRB58_19710 PF00561 alpha/beta hydrolase fold MRB58_19715 PF01062 Bestrophin, RFP-TM, chloride channel MRB58_19720 PF00484 Carbonic anhydrase MRB58_19725 PF13545 Crp-like helix-turn-helix domain MRB58_19725 PF00027 Cyclic nucleotide-binding domain MRB58_19730 PF00115 Cytochrome C and Quinol oxidase polypeptide I MRB58_19745 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP MRB58_19745 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MRB58_19750 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase MRB58_19750 PF13746 4Fe-4S dicluster domain MRB58_19750 PF12801 4Fe-4S binding domain MRB58_19765 PF03597 Cytochrome oxidase maturation protein cbb3-type MRB58_19775 PF01975 Survival protein SurE MRB58_19785 PF04241 Protein of unknown function (DUF423) MRB58_19790 PF01381 Helix-turn-helix MRB58_19795 PF10415 Fumarase C C-terminus MRB58_19795 PF00206 Lyase MRB58_19815 PF01565 FAD binding domain MRB58_19815 PF02913 FAD linked oxidases, C-terminal domain MRB58_19825 PF00654 Voltage gated chloride channel MRB58_19830 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_19835 PF02348 Cytidylyltransferase MRB58_19840 PF00793 DAHP synthetase I family MRB58_19845 PF00075 RNase H MRB58_19855 PF01636 Phosphotransferase enzyme family MRB58_19860 PF02401 LytB protein MRB58_19875 PF03061 Thioesterase superfamily MRB58_19880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MRB58_19885 PF13380 CoA binding domain MRB58_19885 PF13607 Succinyl-CoA ligase like flavodoxin domain MRB58_19900 PF00211 Adenylate and Guanylate cyclase catalytic domain MRB58_19910 PF00497 Bacterial extracellular solute-binding proteins, family 3 MRB58_19910 PF01464 Transglycosylase SLT domain MRB58_19915 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_19920 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_19925 PF00005 ABC transporter MRB58_19930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_19930 PF00005 ABC transporter MRB58_19935 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_19935 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_19940 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_19945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_19950 PF00106 short chain dehydrogenase MRB58_19950 PF00300 Histidine phosphatase superfamily (branch 1) MRB58_19960 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_19960 PF17806 Sarcosine oxidase A3 domain MRB58_19970 PF01266 FAD dependent oxidoreductase MRB58_19975 PF01266 FAD dependent oxidoreductase MRB58_19980 PF01266 FAD dependent oxidoreductase MRB58_19985 PF00005 ABC transporter MRB58_19985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_19990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_19990 PF00005 ABC transporter MRB58_19995 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_20000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_20005 PF02538 Hydantoinase B/oxoprolinase MRB58_20010 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_20010 PF01968 Hydantoinase/oxoprolinase MRB58_20015 PF07729 FCD domain MRB58_20020 PF01968 Hydantoinase/oxoprolinase MRB58_20020 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_20030 PF00561 alpha/beta hydrolase fold MRB58_20050 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MRB58_20050 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MRB58_20055 PF00941 FAD binding domain in molybdopterin dehydrogenase MRB58_20055 PF03450 CO dehydrogenase flavoprotein C-terminal domain MRB58_20060 PF01799 [2Fe-2S] binding domain MRB58_20060 PF00111 2Fe-2S iron-sulfur cluster binding domain MRB58_20060 PF10518 TAT (twin-arginine translocation) pathway signal sequence MRB58_20075 PF00512 His Kinase A (phospho-acceptor) domain MRB58_20075 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) MRB58_20075 PF00072 Response regulator receiver domain MRB58_20075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_20075 PF00672 HAMP domain MRB58_20075 PF01627 Hpt domain MRB58_20080 PF00072 Response regulator receiver domain MRB58_20080 PF00990 Diguanylate cyclase, GGDEF domain MRB58_20085 PF13533 Biotin-lipoyl like MRB58_20090 PF00005 ABC transporter MRB58_20090 PF00664 ABC transporter transmembrane region MRB58_20090 PF03412 Peptidase C39 family MRB58_20095 PF00005 ABC transporter MRB58_20095 PF00664 ABC transporter transmembrane region MRB58_20135 PF02322 Cytochrome bd terminal oxidase subunit II MRB58_20140 PF01654 Cytochrome bd terminal oxidase subunit I MRB58_20145 PF00753 Metallo-beta-lactamase superfamily MRB58_20160 PF04279 Intracellular septation protein A MRB58_20165 PF00574 Clp protease MRB58_20170 PF00248 Aldo/keto reductase family MRB58_20180 PF00043 Glutathione S-transferase, C-terminal domain MRB58_20180 PF13417 Glutathione S-transferase, N-terminal domain MRB58_20195 PF13581 Histidine kinase-like ATPase domain MRB58_20195 PF07536 HWE histidine kinase MRB58_20195 PF13426 PAS domain MRB58_20210 PF00080 Copper/zinc superoxide dismutase (SODC) MRB58_20215 PF00425 chorismate binding enzyme MRB58_20215 PF00117 Glutamine amidotransferase class-I MRB58_20215 PF04715 Anthranilate synthase component I, N terminal region MRB58_20260 PF02142 MGS-like domain MRB58_20275 PF00303 Thymidylate synthase MRB58_20280 PF00186 Dihydrofolate reductase MRB58_20285 PF01145 SPFH domain / Band 7 family MRB58_20290 PF01145 SPFH domain / Band 7 family MRB58_20300 PF13180 PDZ domain MRB58_20310 PF01894 Uncharacterised protein family UPF0047 MRB58_20320 PF00005 ABC transporter MRB58_20330 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_20335 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_20350 PF04002 RadC-like JAB domain MRB58_20355 PF00701 Dihydrodipicolinate synthetase family MRB58_20365 PF17806 Sarcosine oxidase A3 domain MRB58_20365 PF07992 Pyridine nucleotide-disulphide oxidoreductase MRB58_20385 PF00501 AMP-binding enzyme MRB58_20385 PF01553 Acyltransferase MRB58_20395 PF08406 CbbQ/NirQ/NorQ C-terminal MRB58_20395 PF07728 AAA domain (dynein-related subfamily) MRB58_20400 PF00795 Carbon-nitrogen hydrolase MRB58_20405 PF00561 alpha/beta hydrolase fold MRB58_20410 PF01774 UreD urease accessory protein MRB58_20415 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRB58_20420 PF00449 Urease alpha-subunit, N-terminal domain MRB58_20420 PF01979 Amidohydrolase family MRB58_20425 PF00547 Urease, gamma subunit MRB58_20425 PF00699 Urease beta subunit MRB58_20430 PF01730 UreF MRB58_20440 PF00005 ABC transporter MRB58_20440 PF09383 NIL domain MRB58_20445 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_20445 PF00005 ABC transporter MRB58_20455 PF02653 Branched-chain amino acid transport system / permease component MRB58_20485 PF01970 Tripartite tricarboxylate transporter TctA family MRB58_20500 PF00067 Cytochrome P450 MRB58_20505 PF01479 S4 domain MRB58_20505 PF00163 Ribosomal protein S4/S9 N-terminal domain MRB58_20510 PF01545 Cation efflux family MRB58_20510 PF16916 Dimerisation domain of Zinc Transporter MRB58_20515 PF00445 Ribonuclease T2 family MRB58_20520 PF02934 GatB/GatE catalytic domain MRB58_20520 PF02637 GatB domain MRB58_20530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_20530 PF03466 LysR substrate binding domain MRB58_20535 PF03448 MgtE intracellular N domain MRB58_20535 PF00571 CBS domain MRB58_20535 PF01769 Divalent cation transporter MRB58_20550 PF03099 Biotin/lipoate A/B protein ligase family MRB58_20555 PF00795 Carbon-nitrogen hydrolase MRB58_20555 PF02540 NAD synthase MRB58_20570 PF00535 Glycosyl transferase family 2 MRB58_20595 PF02743 Cache domain MRB58_20595 PF00211 Adenylate and Guanylate cyclase catalytic domain MRB58_20595 PF00672 HAMP domain MRB58_20610 PF00873 AcrB/AcrD/AcrF family MRB58_20630 PF01757 Acyltransferase family MRB58_20640 PF00206 Lyase MRB58_20640 PF10397 Adenylosuccinate lyase C-terminus MRB58_20660 PF00027 Cyclic nucleotide-binding domain MRB58_20660 PF00520 Ion transport protein MRB58_20665 PF13180 PDZ domain MRB58_20670 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MRB58_20675 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MRB58_20680 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MRB58_20680 PF00361 Proton-conducting membrane transporter MRB58_20685 PF00361 Proton-conducting membrane transporter MRB58_20690 PF00361 Proton-conducting membrane transporter MRB58_20695 PF02237 Biotin protein ligase C terminal domain MRB58_20695 PF03099 Biotin/lipoate A/B protein ligase family MRB58_20700 PF12706 Beta-lactamase superfamily domain MRB58_20700 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MRB58_20700 PF17770 Ribonuclease J C-terminal domain MRB58_20715 PF09084 NMT1/THI5 like MRB58_20720 PF00005 ABC transporter MRB58_20725 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_20730 PF00857 Isochorismatase family MRB58_20735 PF00561 alpha/beta hydrolase fold MRB58_20740 PF00834 Ribulose-phosphate 3 epimerase family MRB58_20745 PF13419 Haloacid dehalogenase-like hydrolase MRB58_20775 PF00150 Cellulase (glycosyl hydrolase family 5) MRB58_20775 PF00553 Cellulose binding domain MRB58_20800 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_20815 PF13454 FAD-NAD(P)-binding MRB58_20820 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_20840 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_20855 PF07286 Protein of unknown function (DUF1445) MRB58_20860 PF03466 LysR substrate binding domain MRB58_20860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_20880 PF03100 CcmE MRB58_20885 PF01578 Cytochrome C assembly protein MRB58_20885 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal MRB58_20890 PF03918 Cytochrome C biogenesis protein MRB58_20900 PF13180 PDZ domain MRB58_20905 PF00072 Response regulator receiver domain MRB58_20905 PF00486 Transcriptional regulatory protein, C terminal MRB58_20910 PF00512 His Kinase A (phospho-acceptor) domain MRB58_20910 PF00672 HAMP domain MRB58_20910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_20915 PF03710 Glutamate-ammonia ligase adenylyltransferase MRB58_20915 PF08335 GlnD PII-uridylyltransferase MRB58_20920 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_20925 PF00989 PAS fold MRB58_20925 PF00512 His Kinase A (phospho-acceptor) domain MRB58_20925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_20930 PF01433 Peptidase family M1 domain MRB58_20930 PF11940 Domain of unknown function (DUF3458) Ig-like fold MRB58_20930 PF17432 Domain of unknown function (DUF3458_C) ARM repeats MRB58_20935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MRB58_20935 PF02770 Acyl-CoA dehydrogenase, middle domain MRB58_20935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MRB58_20940 PF00571 CBS domain MRB58_20940 PF01380 SIS domain MRB58_20960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_20960 PF00005 ABC transporter MRB58_20965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_20970 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_20975 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_20975 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_20985 PF02686 Glu-tRNAGln amidotransferase C subunit MRB58_20990 PF01425 Amidase MRB58_21000 PF01625 Peptide methionine sulfoxide reductase MRB58_21005 PF00005 ABC transporter MRB58_21010 PF01061 ABC-2 type transporter MRB58_21025 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MRB58_21040 PF00462 Glutaredoxin MRB58_21050 PF00586 AIR synthase related protein, N-terminal domain MRB58_21050 PF02769 AIR synthase related protein, C-terminal domain MRB58_21050 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MRB58_21060 PF00924 Mechanosensitive ion channel MRB58_21075 PF13677 Membrane MotB of proton-channel complex MotA/MotB MRB58_21075 PF00691 OmpA family MRB58_21085 PF08345 Flagellar M-ring protein C-terminal MRB58_21085 PF01514 Secretory protein of YscJ/FliF family MRB58_21090 PF00700 Bacterial flagellin C-terminal helical region MRB58_21090 PF00669 Bacterial flagellin N-terminal helical region MRB58_21095 PF00669 Bacterial flagellin N-terminal helical region MRB58_21095 PF00700 Bacterial flagellin C-terminal helical region MRB58_21100 PF00669 Bacterial flagellin N-terminal helical region MRB58_21100 PF00700 Bacterial flagellin C-terminal helical region MRB58_21105 PF00669 Bacterial flagellin N-terminal helical region MRB58_21105 PF00700 Bacterial flagellin C-terminal helical region MRB58_21125 PF00700 Bacterial flagellin C-terminal helical region MRB58_21125 PF00669 Bacterial flagellin N-terminal helical region MRB58_21135 PF00813 FliP family MRB58_21145 PF02107 Flagellar L-ring protein MRB58_21155 PF02119 Flagellar P-ring protein MRB58_21165 PF00460 Flagella basal body rod protein MRB58_21165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MRB58_21170 PF02049 Flagellar hook-basal body complex protein FliE MRB58_21175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MRB58_21180 PF00460 Flagella basal body rod protein MRB58_21185 PF14602 Hexapeptide repeat of succinyl-transferase MRB58_21185 PF12464 Maltose acetyltransferase MRB58_21190 PF01312 FlhB HrpN YscU SpaS Family MRB58_21195 PF01706 FliG C-terminal domain MRB58_21195 PF14842 FliG N-terminal domain MRB58_21195 PF14841 FliG middle domain MRB58_21200 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MRB58_21215 PF01618 MotA/TolQ/ExbB proton channel family MRB58_21220 PF00975 Thioesterase domain MRB58_21225 PF03109 ABC1 family MRB58_21235 PF07690 Major Facilitator Superfamily MRB58_21240 PF12697 Alpha/beta hydrolase family MRB58_21245 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase MRB58_21250 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase MRB58_21255 PF01648 4'-phosphopantetheinyl transferase superfamily MRB58_21260 PF13193 AMP-binding enzyme C-terminal domain MRB58_21260 PF00501 AMP-binding enzyme MRB58_21265 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_21265 PF08990 Erythronolide synthase docking MRB58_21265 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_21265 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_21265 PF08659 KR domain MRB58_21265 PF00550 Phosphopantetheine attachment site MRB58_21265 PF14765 Polyketide synthase dehydratase MRB58_21265 PF00698 Acyl transferase domain MRB58_21265 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_21270 PF00550 Phosphopantetheine attachment site MRB58_21270 PF14765 Polyketide synthase dehydratase MRB58_21270 PF08659 KR domain MRB58_21270 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_21270 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_21270 PF00698 Acyl transferase domain MRB58_21270 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_21275 PF13193 AMP-binding enzyme C-terminal domain MRB58_21275 PF00668 Condensation domain MRB58_21275 PF00550 Phosphopantetheine attachment site MRB58_21275 PF00501 AMP-binding enzyme MRB58_21280 PF00550 Phosphopantetheine attachment site MRB58_21280 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_21280 PF14765 Polyketide synthase dehydratase MRB58_21280 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_21280 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_21280 PF00698 Acyl transferase domain MRB58_21280 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_21280 PF08659 KR domain MRB58_21285 PF00501 AMP-binding enzyme MRB58_21285 PF13193 AMP-binding enzyme C-terminal domain MRB58_21285 PF00668 Condensation domain MRB58_21285 PF00109 Beta-ketoacyl synthase, N-terminal domain MRB58_21285 PF02801 Beta-ketoacyl synthase, C-terminal domain MRB58_21285 PF08659 KR domain MRB58_21285 PF00550 Phosphopantetheine attachment site MRB58_21285 PF14765 Polyketide synthase dehydratase MRB58_21285 PF16197 Ketoacyl-synthetase C-terminal extension MRB58_21295 PF00561 alpha/beta hydrolase fold MRB58_21305 PF00460 Flagella basal body rod protein MRB58_21305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MRB58_21315 PF13419 Haloacid dehalogenase-like hydrolase MRB58_21320 PF01063 Amino-transferase class IV MRB58_21325 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MRB58_21325 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MRB58_21340 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain MRB58_21340 PF00326 Prolyl oligopeptidase family MRB58_21345 PF01641 SelR domain MRB58_21350 PF13244 Domain of unknown function (DUF4040) MRB58_21350 PF00361 Proton-conducting membrane transporter MRB58_21350 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MRB58_21355 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter MRB58_21360 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MRB58_21365 PF00361 Proton-conducting membrane transporter MRB58_21370 PF01899 Na+/H+ ion antiporter subunit MRB58_21375 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) MRB58_21380 PF03334 Na+/H+ antiporter subunit MRB58_21385 PF05443 ROS/MUCR transcriptional regulator protein MRB58_21400 PF02657 Fe-S metabolism associated domain MRB58_21410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MRB58_21410 PF00205 Thiamine pyrophosphate enzyme, central domain MRB58_21410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MRB58_21420 PF00873 AcrB/AcrD/AcrF family MRB58_21430 PF13533 Biotin-lipoyl like MRB58_21440 PF00392 Bacterial regulatory proteins, gntR family MRB58_21440 PF07729 FCD domain MRB58_21445 PF03150 Di-haem cytochrome c peroxidase MRB58_21455 PF01325 Iron dependent repressor, N-terminal DNA binding domain MRB58_21455 PF00480 ROK family MRB58_21460 PF13407 Periplasmic binding protein domain MRB58_21465 PF02653 Branched-chain amino acid transport system / permease component MRB58_21470 PF00005 ABC transporter MRB58_21480 PF00553 Cellulose binding domain MRB58_21480 PF00150 Cellulase (glycosyl hydrolase family 5) MRB58_21490 PF10727 Rossmann-like domain MRB58_21490 PF16896 Phosphogluconate dehydrogenase (decarboxylating) C-term MRB58_21495 PF13407 Periplasmic binding protein domain MRB58_21505 PF00005 ABC transporter MRB58_21510 PF02653 Branched-chain amino acid transport system / permease component MRB58_21515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MRB58_21515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MRB58_21520 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain MRB58_21520 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain MRB58_21525 PF07005 Sugar-binding N-terminal domain MRB58_21525 PF17042 Nucleotide-binding C-terminal domain MRB58_21530 PF00392 Bacterial regulatory proteins, gntR family MRB58_21530 PF07729 FCD domain MRB58_21535 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_21540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_21540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_21550 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_21555 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_21560 PF00005 ABC transporter MRB58_21560 PF17912 MalK OB fold domain MRB58_21570 PF01575 MaoC like domain MRB58_21575 PF02798 Glutathione S-transferase, N-terminal domain MRB58_21575 PF00043 Glutathione S-transferase, C-terminal domain MRB58_21585 PF01336 OB-fold nucleic acid binding domain MRB58_21585 PF02938 GAD domain MRB58_21585 PF00152 tRNA synthetases class II (D, K and N) MRB58_21590 PF00999 Sodium/hydrogen exchanger family MRB58_21600 PF08471 Class II vitamin B12-dependent ribonucleotide reductase MRB58_21600 PF02867 Ribonucleotide reductase, barrel domain MRB58_21615 PF07687 Peptidase dimerisation domain MRB58_21615 PF01546 Peptidase family M20/M25/M40 MRB58_21625 PF02129 X-Pro dipeptidyl-peptidase (S15 family) MRB58_21625 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain MRB58_21630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_21635 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_21640 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_21645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_21645 PF00005 ABC transporter MRB58_21650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_21650 PF00005 ABC transporter MRB58_21670 PF01510 N-acetylmuramoyl-L-alanine amidase MRB58_21675 PF00226 DnaJ domain MRB58_21675 PF05099 Tellurite resistance protein TerB MRB58_21680 PF12146 Serine aminopeptidase, S33 MRB58_21685 PF00011 Hsp20/alpha crystallin family MRB58_21690 PF01212 Beta-eliminating lyase MRB58_21705 PF05114 Protein of unknown function (DUF692) MRB58_21715 PF03466 LysR substrate binding domain MRB58_21715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_21720 PF12146 Serine aminopeptidase, S33 MRB58_21725 PF02627 Carboxymuconolactone decarboxylase family MRB58_21730 PF00775 Dioxygenase MRB58_21730 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal MRB58_21735 PF00775 Dioxygenase MRB58_21740 PF10397 Adenylosuccinate lyase C-terminus MRB58_21740 PF00206 Lyase MRB58_21745 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_21755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_21760 PF01717 Cobalamin-independent synthase, Catalytic domain MRB58_21780 PF02634 FdhD/NarQ family MRB58_21785 PF12804 MobA-like NTP transferase domain MRB58_21790 PF03205 Molybdopterin guanine dinucleotide synthesis protein B MRB58_21795 PF03453 MoeA N-terminal region (domain I and II) MRB58_21795 PF00994 Probable molybdopterin binding domain MRB58_21795 PF03454 MoeA C-terminal region (domain IV) MRB58_21800 PF07690 Major Facilitator Superfamily MRB58_21805 PF00497 Bacterial extracellular solute-binding proteins, family 3 MRB58_21810 PF03447 Homoserine dehydrogenase, NAD binding domain MRB58_21810 PF01958 Domain of unknown function DUF108 MRB58_21820 PF01016 Ribosomal L27 protein MRB58_21825 PF01926 50S ribosome-binding GTPase MRB58_21825 PF01018 GTP1/OBG MRB58_21830 PF00696 Amino acid kinase family MRB58_21830 PF01472 PUA domain MRB58_21835 PF00171 Aldehyde dehydrogenase family MRB58_21840 PF01467 Cytidylyltransferase-like MRB58_21845 PF04055 Radical SAM superfamily MRB58_21850 PF00994 Probable molybdopterin binding domain MRB58_21855 PF03949 Malic enzyme, NAD binding domain MRB58_21855 PF01515 Phosphate acetyl/butaryl transferase MRB58_21855 PF00390 Malic enzyme, N-terminal domain MRB58_21880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MRB58_21880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MRB58_21885 PF01451 Low molecular weight phosphotyrosine protein phosphatase MRB58_21915 PF00809 Pterin binding enzyme MRB58_21920 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MRB58_21925 PF02699 Preprotein translocase subunit MRB58_21930 PF07549 SecD/SecF GG Motif MRB58_21930 PF02355 Protein export membrane protein MRB58_21935 PF07549 SecD/SecF GG Motif MRB58_21935 PF02355 Protein export membrane protein MRB58_21940 PF04430 Protein of unknown function (DUF498/DUF598) MRB58_21950 PF02540 NAD synthase MRB58_21950 PF00117 Glutamine amidotransferase class-I MRB58_21950 PF00958 GMP synthase C terminal domain MRB58_21955 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family MRB58_21975 PF00512 His Kinase A (phospho-acceptor) domain MRB58_21975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_21985 PF00196 Bacterial regulatory proteins, luxR family MRB58_21985 PF00072 Response regulator receiver domain MRB58_21990 PF12706 Beta-lactamase superfamily domain MRB58_21995 PF03070 TENA/THI-4/PQQC family MRB58_22000 PF05199 GMC oxidoreductase MRB58_22000 PF00732 GMC oxidoreductase MRB58_22005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_22005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_22015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_22015 PF00005 ABC transporter MRB58_22020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_22020 PF00005 ABC transporter MRB58_22025 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_22030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_22040 PF01494 FAD binding domain MRB58_22055 PF03167 Uracil DNA glycosylase superfamily MRB58_22060 PF00149 Calcineurin-like phosphoesterase MRB58_22065 PF01925 Sulfite exporter TauE/SafE MRB58_22070 PF00924 Mechanosensitive ion channel MRB58_22070 PF12795 Mechanosensitive ion channel porin domain MRB58_22070 PF12794 Mechanosensitive ion channel inner membrane domain 1 MRB58_22080 PF00497 Bacterial extracellular solute-binding proteins, family 3 MRB58_22090 PF02735 Ku70/Ku80 beta-barrel domain MRB58_22095 PF04679 ATP dependent DNA ligase C terminal region MRB58_22095 PF13298 DNA polymerase Ligase (LigD) MRB58_22095 PF01068 ATP dependent DNA ligase domain MRB58_22100 PF00982 Glycosyltransferase family 20 MRB58_22105 PF00171 Aldehyde dehydrogenase family MRB58_22110 PF01699 Sodium/calcium exchanger protein MRB58_22120 PF00563 EAL domain MRB58_22120 PF03707 Bacterial signalling protein N terminal repeat MRB58_22120 PF00990 Diguanylate cyclase, GGDEF domain MRB58_22125 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP MRB58_22135 PF07685 CobB/CobQ-like glutamine amidotransferase domain MRB58_22140 PF03186 CobD/Cbib protein MRB58_22145 PF00155 Aminotransferase class I and II MRB58_22150 PF00120 Glutamine synthetase, catalytic domain MRB58_22150 PF03951 Glutamine synthetase, beta-Grasp domain MRB58_22155 PF00543 Nitrogen regulatory protein P-II MRB58_22160 PF01256 Carbohydrate kinase MRB58_22160 PF03853 YjeF-related protein N-terminus MRB58_22175 PF05697 Bacterial trigger factor protein (TF) MRB58_22175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MRB58_22175 PF05698 Bacterial trigger factor protein (TF) C-terminus MRB58_22180 PF00574 Clp protease MRB58_22185 PF06689 ClpX C4-type zinc finger MRB58_22185 PF07724 AAA domain (Cdc48 subfamily) MRB58_22185 PF10431 C-terminal, D2-small domain, of ClpB protein MRB58_22190 PF02190 ATP-dependent protease La (LON) substrate-binding domain MRB58_22190 PF00004 ATPase family associated with various cellular activities (AAA) MRB58_22190 PF05362 Lon protease (S16) C-terminal proteolytic domain MRB58_22195 PF00216 Bacterial DNA-binding protein MRB58_22200 PF01594 AI-2E family transporter MRB58_22205 PF03631 Virulence factor BrkB MRB58_22210 PF05532 CsbD-like MRB58_22215 PF07536 HWE histidine kinase MRB58_22215 PF13581 Histidine kinase-like ATPase domain MRB58_22215 PF13426 PAS domain MRB58_22225 PF08281 Sigma-70, region 4 MRB58_22225 PF04542 Sigma-70 region 2 MRB58_22235 PF00072 Response regulator receiver domain MRB58_22250 PF01177 Asp/Glu/Hydantoin racemase MRB58_22255 PF01979 Amidohydrolase family MRB58_22260 PF13378 Enolase C-terminal domain-like MRB58_22260 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MRB58_22275 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_22280 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_22295 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_22305 PF03480 Bacterial extracellular solute-binding protein, family 7 MRB58_22310 PF00392 Bacterial regulatory proteins, gntR family MRB58_22310 PF07729 FCD domain MRB58_22315 PF03358 NADPH-dependent FMN reductase MRB58_22325 PF04955 HupE / UreJ protein MRB58_22330 PF00204 DNA gyrase B MRB58_22330 PF00986 DNA gyrase B subunit, carboxyl terminus MRB58_22330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_22330 PF01751 Toprim domain MRB58_22350 PF00920 Dehydratase family MRB58_22375 PF07237 Protein of unknown function (DUF1428) MRB58_22385 PF01638 HxlR-like helix-turn-helix MRB58_22395 PF01521 Iron-sulphur cluster biosynthesis MRB58_22400 PF13286 Phosphohydrolase-associated domain MRB58_22400 PF01966 HD domain MRB58_22410 PF03485 Arginyl tRNA synthetase N terminal domain MRB58_22410 PF05746 DALR anticodon binding domain MRB58_22410 PF00750 tRNA synthetases class I (R) MRB58_22420 PF00933 Glycosyl hydrolase family 3 N terminal domain MRB58_22425 PF02616 Segregation and condensation protein ScpA MRB58_22430 PF04079 Segregation and condensation complex subunit ScpB MRB58_22435 PF00005 ABC transporter MRB58_22435 PF08402 TOBE domain MRB58_22440 PF02416 mttA/Hcf106 family MRB58_22445 PF02416 mttA/Hcf106 family MRB58_22450 PF00902 Sec-independent protein translocase protein (TatC) MRB58_22455 PF00578 AhpC/TSA family MRB58_22465 PF00579 tRNA synthetases class I (W and Y) MRB58_22470 PF03702 Anhydro-N-acetylmuramic acid kinase MRB58_22475 PF02129 X-Pro dipeptidyl-peptidase (S15 family) MRB58_22480 PF00266 Aminotransferase class-V MRB58_22485 PF01458 Uncharacterized protein family (UPF0051) MRB58_22495 PF00005 ABC transporter MRB58_22500 PF01458 Uncharacterized protein family (UPF0051) MRB58_22505 PF00266 Aminotransferase class-V MRB58_22510 PF01883 Iron-sulfur cluster assembly protein MRB58_22515 PF01521 Iron-sulphur cluster biosynthesis MRB58_22525 PF00270 DEAD/DEAH box helicase MRB58_22525 PF00271 Helicase conserved C-terminal domain MRB58_22550 PF01810 LysE type translocator MRB58_22555 PF01259 SAICAR synthetase MRB58_22580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_22605 PF03547 Membrane transport protein MRB58_22610 PF01494 FAD binding domain MRB58_22615 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_22615 PF00107 Zinc-binding dehydrogenase MRB58_22620 PF07687 Peptidase dimerisation domain MRB58_22620 PF01546 Peptidase family M20/M25/M40 MRB58_22630 PF03330 Lytic transglycolase MRB58_22630 PF05036 Sporulation related domain MRB58_22635 PF02223 Thymidylate kinase MRB58_22645 PF09334 tRNA synthetases class I (M) MRB58_22645 PF08264 Anticodon-binding domain of tRNA MRB58_22650 PF01026 TatD related DNase MRB58_22655 PF03099 Biotin/lipoate A/B protein ligase family MRB58_22655 PF12706 Beta-lactamase superfamily domain MRB58_22660 PF03819 MazG nucleotide pyrophosphohydrolase domain MRB58_22665 PF00378 Enoyl-CoA hydratase/isomerase MRB58_22670 PF16360 GTP-binding GTPase Middle Region MRB58_22670 PF13167 GTP-binding GTPase N-terminal MRB58_22670 PF01926 50S ribosome-binding GTPase MRB58_22675 PF17209 Hfq protein MRB58_22680 PF01063 Amino-transferase class IV MRB58_22685 PF02254 TrkA-N domain MRB58_22685 PF02080 TrkA-C domain MRB58_22690 PF01177 Asp/Glu/Hydantoin racemase MRB58_22700 PF00072 Response regulator receiver domain MRB58_22700 PF02954 Bacterial regulatory protein, Fis family MRB58_22700 PF00158 Sigma-54 interaction domain MRB58_22705 PF00672 HAMP domain MRB58_22705 PF00512 His Kinase A (phospho-acceptor) domain MRB58_22705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_22705 PF00989 PAS fold MRB58_22720 PF00364 Biotin-requiring enzyme MRB58_22720 PF02779 Transketolase, pyrimidine binding domain MRB58_22720 PF02780 Transketolase, C-terminal domain MRB58_22725 PF00676 Dehydrogenase E1 component MRB58_22740 PF02091 Glycyl-tRNA synthetase alpha subunit MRB58_22750 PF01380 SIS domain MRB58_22760 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_22760 PF12804 MobA-like NTP transferase domain MRB58_22770 PF03576 Peptidase family S58 MRB58_22775 PF01235 Sodium:alanine symporter family MRB58_22780 PF01232 Mannitol dehydrogenase Rossmann domain MRB58_22780 PF08125 Mannitol dehydrogenase C-terminal domain MRB58_22785 PF00005 ABC transporter MRB58_22785 PF08402 TOBE domain MRB58_22790 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_22795 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_22805 PF00933 Glycosyl hydrolase family 3 N terminal domain MRB58_22810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MRB58_22810 PF08447 PAS fold MRB58_22810 PF13426 PAS domain MRB58_22815 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region MRB58_22815 PF01243 Pyridoxamine 5'-phosphate oxidase MRB58_22820 PF00226 DnaJ domain MRB58_22820 PF01556 DnaJ C terminal domain MRB58_22830 PF00753 Metallo-beta-lactamase superfamily MRB58_22830 PF16123 Hydroxyacylglutathione hydrolase C-terminus MRB58_22835 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRB58_22840 PF07694 5TMR of 5TMR-LYT MRB58_22840 PF00990 Diguanylate cyclase, GGDEF domain MRB58_22845 PF01730 UreF MRB58_22850 PF05194 UreE urease accessory protein, C-terminal domain MRB58_22850 PF02814 UreE urease accessory protein, N-terminal domain MRB58_22865 PF00449 Urease alpha-subunit, N-terminal domain MRB58_22865 PF01979 Amidohydrolase family MRB58_22870 PF18364 Molybdopterin oxidoreductase N-terminal domain MRB58_22870 PF00384 Molybdopterin oxidoreductase MRB58_22870 PF01568 Molydopterin dinucleotide binding domain MRB58_22875 PF01351 Ribonuclease HII MRB58_22885 PF07687 Peptidase dimerisation domain MRB58_22885 PF01546 Peptidase family M20/M25/M40 MRB58_22890 PF01425 Amidase MRB58_22895 PF05035 2-keto-3-deoxy-galactonokinase MRB58_22900 PF00920 Dehydratase family MRB58_22905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MRB58_22910 PF00083 Sugar (and other) transporter MRB58_22915 PF05159 Capsule polysaccharide biosynthesis protein MRB58_22920 PF00664 ABC transporter transmembrane region MRB58_22920 PF00005 ABC transporter MRB58_22925 PF00529 HlyD membrane-fusion protein of T1SS MRB58_22930 PF02321 Outer membrane efflux protein MRB58_22945 PF00005 ABC transporter MRB58_22945 PF00664 ABC transporter transmembrane region MRB58_22995 PF00589 Phage integrase family MRB58_23025 PF10134 Replication initiator protein A MRB58_23035 PF13614 AAA domain MRB58_23045 PF01850 PIN domain MRB58_23095 PF02411 MerT mercuric transport protein MRB58_23100 PF13411 MerR HTH family regulatory protein MRB58_23105 PF03358 NADPH-dependent FMN reductase MRB58_23110 PF01758 Sodium Bile acid symporter family MRB58_23115 PF03960 ArsC family MRB58_23135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_23135 PF17203 Single cache domain 3 MRB58_23140 PF00072 Response regulator receiver domain MRB58_23140 PF00158 Sigma-54 interaction domain MRB58_23140 PF02954 Bacterial regulatory protein, Fis family MRB58_23150 PF01568 Molydopterin dinucleotide binding domain MRB58_23150 PF18465 Rieske 3Fe-4S MRB58_23150 PF00384 Molybdopterin oxidoreductase MRB58_23155 PF00994 Probable molybdopterin binding domain MRB58_23155 PF03454 MoeA C-terminal region (domain IV) MRB58_23155 PF03453 MoeA N-terminal region (domain I and II) MRB58_23165 PF00394 Multicopper oxidase MRB58_23165 PF07731 Multicopper oxidase MRB58_23165 PF07732 Multicopper oxidase MRB58_23170 PF03734 L,D-transpeptidase catalytic domain MRB58_23170 PF01476 LysM domain MRB58_23180 PF01476 LysM domain MRB58_23180 PF17969 L,D-transpeptidase C-terminal domain MRB58_23180 PF03734 L,D-transpeptidase catalytic domain MRB58_23195 PF06965 Na+/H+ antiporter 1 MRB58_23195 PF13462 Thioredoxin MRB58_23205 PF00403 Heavy-metal-associated domain MRB58_23215 PF13520 Amino acid permease MRB58_23225 PF00376 MerR family regulatory protein MRB58_23225 PF09278 MerR, DNA binding MRB58_23235 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MRB58_23245 PF00146 NADH dehydrogenase MRB58_23255 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MRB58_23260 PF00361 Proton-conducting membrane transporter MRB58_23260 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MRB58_23265 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus MRB58_23265 PF00361 Proton-conducting membrane transporter MRB58_23270 PF00361 Proton-conducting membrane transporter MRB58_23285 PF00127 Copper binding proteins, plastocyanin/azurin family MRB58_23310 PF05717 IS66 Orf2 like protein MRB58_23315 PF03050 Transposase IS66 family MRB58_23315 PF13817 IS66 C-terminal element MRB58_23315 PF13007 Transposase C of IS166 homeodomain MRB58_23315 PF13005 zinc-finger binding domain of transposase IS66 MRB58_23340 PF08534 Redoxin MRB58_23345 PF08534 Redoxin MRB58_23370 PF02683 Cytochrome C biogenesis protein transmembrane region MRB58_23390 PF18818 Metallopeptidase superfamily domain MRB58_23390 PF08401 Domain of unknown function (DUF1738) MRB58_23410 PF07015 VirC1 protein MRB58_23415 PF07328 T-DNA border endonuclease VirD1 MRB58_23420 PF03432 Relaxase/Mobilisation nuclease domain MRB58_23425 PF02534 Type IV secretory system Conjugative DNA transfer MRB58_23455 PF00437 Type II/IV secretion system protein MRB58_23465 PF03524 Conjugal transfer protein MRB58_23490 PF03135 CagE, TrbE, VirB family, component of type IV transporter system MRB58_23505 PF01464 Transglycosylase SLT domain MRB58_23525 PF01476 LysM domain MRB58_23525 PF01551 Peptidase family M23 MRB58_23530 PF17969 L,D-transpeptidase C-terminal domain MRB58_23530 PF03734 L,D-transpeptidase catalytic domain MRB58_23535 PF01551 Peptidase family M23 MRB58_23545 PF13411 MerR HTH family regulatory protein MRB58_23550 PF02630 SCO1/SenC MRB58_23555 PF02600 Disulfide bond formation protein DsbB MRB58_23560 PF06965 Na+/H+ antiporter 1 MRB58_23560 PF13462 Thioredoxin MRB58_23570 PF02630 SCO1/SenC MRB58_23575 PF01252 Signal peptidase (SPase) II MRB58_23580 PF01566 Natural resistance-associated macrophage protein MRB58_23585 PF02742 Iron dependent repressor, metal binding and dimerisation domain MRB58_23585 PF01325 Iron dependent repressor, N-terminal DNA binding domain MRB58_23590 PF00403 Heavy-metal-associated domain MRB58_23605 PF02630 SCO1/SenC MRB58_23610 PF10134 Replication initiator protein A MRB58_23620 PF02796 Helix-turn-helix domain of resolvase MRB58_23620 PF00239 Resolvase, N terminal domain MRB58_23640 PF01464 Transglycosylase SLT domain MRB58_23685 PF01522 Polysaccharide deacetylase MRB58_23695 PF00005 ABC transporter MRB58_23695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_23700 PF00005 ABC transporter MRB58_23700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_23715 PF02653 Branched-chain amino acid transport system / permease component MRB58_23725 PF00005 ABC transporter MRB58_23725 PF17850 CysA C-terminal regulatory domain MRB58_23725 PF12857 TOBE-like domain MRB58_23730 PF00005 ABC transporter MRB58_23730 PF09383 NIL domain MRB58_23735 PF10134 Replication initiator protein A MRB58_23755 PF00144 Beta-lactamase MRB58_23755 PF11954 Domain of unknown function (DUF3471) MRB58_23765 PF07015 VirC1 protein MRB58_23770 PF17645 Arylmalonate decarboxylase MRB58_23785 PF03401 Tripartite tricarboxylate transporter family receptor MRB58_23795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_23795 PF03466 LysR substrate binding domain MRB58_23800 PF01212 Beta-eliminating lyase MRB58_23805 PF00005 ABC transporter MRB58_23810 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_23815 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_23820 PF00497 Bacterial extracellular solute-binding proteins, family 3 MRB58_23825 PF00392 Bacterial regulatory proteins, gntR family MRB58_23830 PF00266 Aminotransferase class-V MRB58_23835 PF00990 Diguanylate cyclase, GGDEF domain MRB58_23845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_23850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_23855 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_23860 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_23860 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_23870 PF00535 Glycosyl transferase family 2 MRB58_23880 PF00210 Ferritin-like domain MRB58_23905 PF00535 Glycosyl transferase family 2 MRB58_23950 PF00132 Bacterial transferase hexapeptide (six repeats) MRB58_23960 PF13439 Glycosyltransferase Family 4 MRB58_23960 PF00534 Glycosyl transferases group 1 MRB58_23965 PF00535 Glycosyl transferase family 2 MRB58_23980 PF00005 ABC transporter MRB58_23980 PF14524 Wzt C-terminal domain MRB58_23995 PF07015 VirC1 protein MRB58_24030 PF00535 Glycosyl transferase family 2 MRB58_24035 PF03079 ARD/ARD' family MRB58_24040 PF16363 GDP-mannose 4,6 dehydratase MRB58_24065 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component MRB58_24070 PF03060 Nitronate monooxygenase MRB58_24080 PF00378 Enoyl-CoA hydratase/isomerase MRB58_24085 PF02515 CoA-transferase family III MRB58_24100 PF00378 Enoyl-CoA hydratase/isomerase MRB58_24100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MRB58_24100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MRB58_24110 PF05593 RHS Repeat MRB58_24120 PF00042 Globin MRB58_24125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MRB58_24125 PF03466 LysR substrate binding domain MRB58_24130 PF00175 Oxidoreductase NAD-binding domain MRB58_24130 PF00042 Globin MRB58_24130 PF00970 Oxidoreductase FAD-binding domain MRB58_24145 PF00440 Bacterial regulatory proteins, tetR family MRB58_24150 PF13533 Biotin-lipoyl like MRB58_24155 PF07690 Major Facilitator Superfamily MRB58_24160 PF01327 Polypeptide deformylase MRB58_24165 PF00248 Aldo/keto reductase family MRB58_24170 PF11862 Domain of unknown function (DUF3382) MRB58_24170 PF02653 Branched-chain amino acid transport system / permease component MRB58_24175 PF02653 Branched-chain amino acid transport system / permease component MRB58_24180 PF00005 ABC transporter MRB58_24185 PF00005 ABC transporter MRB58_24185 PF12399 Branched-chain amino acid ATP-binding cassette transporter MRB58_24190 PF07729 FCD domain MRB58_24190 PF00392 Bacterial regulatory proteins, gntR family MRB58_24215 PF13378 Enolase C-terminal domain-like MRB58_24220 PF00180 Isocitrate/isopropylmalate dehydrogenase MRB58_24235 PF01968 Hydantoinase/oxoprolinase MRB58_24235 PF05378 Hydantoinase/oxoprolinase N-terminal region MRB58_24240 PF01546 Peptidase family M20/M25/M40 MRB58_24240 PF07687 Peptidase dimerisation domain MRB58_24245 PF07729 FCD domain MRB58_24245 PF00392 Bacterial regulatory proteins, gntR family MRB58_24250 PF00107 Zinc-binding dehydrogenase MRB58_24250 PF08240 Alcohol dehydrogenase GroES-like domain MRB58_24270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MRB58_24275 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_24280 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_24280 PF12911 N-terminal TM domain of oligopeptide transport permease C MRB58_24285 PF00005 ABC transporter MRB58_24285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_24290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MRB58_24290 PF00005 ABC transporter MRB58_24300 PF08808 RES domain MRB58_24310 PF02195 ParB-like nuclease domain MRB58_24310 PF07506 RepB plasmid partitioning protein MRB58_24315 PF13614 AAA domain MRB58_24320 PF11800 Replication protein C C-terminal region MRB58_24320 PF03428 Replication protein C N-terminal domain MRB58_24325 PF01964 Radical SAM ThiC family MRB58_24325 PF13667 ThiC-associated domain MRB58_24335 PF00005 ABC transporter MRB58_24340 PF00528 Binding-protein-dependent transport system inner membrane component MRB58_24345 PF03069 Acetamidase/Formamidase family MRB58_24350 PF00106 short chain dehydrogenase MRB58_24360 PF01546 Peptidase family M20/M25/M40 MRB58_24360 PF07687 Peptidase dimerisation domain MRB58_24365 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MRB58_24365 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MRB58_24375 PF12833 Helix-turn-helix domain MRB58_24375 PF01965 DJ-1/PfpI family MRB58_24380 PF01965 DJ-1/PfpI family MRB58_24385 PF07969 Amidohydrolase family MRB58_24390 PF07683 Cobalamin synthesis protein cobW C-terminal domain MRB58_24390 PF02492 CobW/HypB/UreG, nucleotide-binding domain MRB58_24395 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MRB58_24395 PF10996 Beta-Casp domain MRB58_24395 PF00753 Metallo-beta-lactamase superfamily MRB58_24400 PF13193 AMP-binding enzyme C-terminal domain MRB58_24400 PF00501 AMP-binding enzyme MRB58_24405 PF02436 Conserved carboxylase domain MRB58_24405 PF00682 HMGL-like MRB58_24405 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MRB58_24405 PF00364 Biotin-requiring enzyme MRB58_24405 PF00289 Biotin carboxylase, N-terminal domain MRB58_24405 PF02785 Biotin carboxylase C-terminal domain MRB58_24410 PF13426 PAS domain MRB58_24410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_24410 PF00072 Response regulator receiver domain MRB58_24415 PF08448 PAS fold MRB58_24415 PF00990 Diguanylate cyclase, GGDEF domain MRB58_24415 PF05231 MASE1 MRB58_24415 PF13426 PAS domain MRB58_24415 PF08447 PAS fold MRB58_24415 PF00563 EAL domain MRB58_24420 PF01270 Glycosyl hydrolases family 8 MRB58_24425 PF00486 Transcriptional regulatory protein, C terminal MRB58_24425 PF00072 Response regulator receiver domain MRB58_24430 PF00990 Diguanylate cyclase, GGDEF domain MRB58_24430 PF00563 EAL domain MRB58_24430 PF03707 Bacterial signalling protein N terminal repeat MRB58_24435 PF00535 Glycosyl transferase family 2 MRB58_24440 PF01270 Glycosyl hydrolases family 8 MRB58_24445 PF08755 Hemimethylated DNA-binding protein YccV like MRB58_24475 PF00294 pfkB family carbohydrate kinase MRB58_24495 PF16363 GDP-mannose 4,6 dehydratase MRB58_24515 PF10134 Replication initiator protein A MRB58_24520 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MRB58_24520 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MRB58_24520 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MRB58_24525 PF00291 Pyridoxal-phosphate dependent enzyme MRB58_24530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MRB58_24530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MRB58_24530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MRB58_24535 PF01370 NAD dependent epimerase/dehydratase family MRB58_24545 PF01274 Malate synthase MRB58_24555 PF03328 HpcH/HpaI aldolase/citrate lyase family MRB58_24560 PF02348 Cytidylyltransferase MRB58_24565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MRB58_24565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MRB58_24575 PF01370 NAD dependent epimerase/dehydratase family MRB58_24590 PF13614 AAA domain MRB58_24595 PF02195 ParB-like nuclease domain MRB58_24595 PF07506 RepB plasmid partitioning protein MRB58_24615 PF01370 NAD dependent epimerase/dehydratase family MRB58_24620 PF00360 Phytochrome region MRB58_24620 PF00512 His Kinase A (phospho-acceptor) domain MRB58_24620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MRB58_24620 PF08446 PAS fold MRB58_24620 PF01590 GAF domain MRB58_24630 PF00654 Voltage gated chloride channel MRB58_24635 PF13091 PLD-like domain MRB58_24635 PF13396 Phospholipase_D-nuclease N-terminal MRB58_24655 PF01618 MotA/TolQ/ExbB proton channel family MRB58_24705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MRB58_24730 PF01970 Tripartite tricarboxylate transporter TctA family MRB58_24740 PF03401 Tripartite tricarboxylate transporter family receptor MRB58_24755 PF00483 Nucleotidyl transferase MRB58_24760 PF04321 RmlD substrate binding domain MRB58_24765 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MRB58_24770 PF01270 Glycosyl hydrolases family 8 MRB58_24795 PF04199 Putative cyclase MRB58_24805 PF02796 Helix-turn-helix domain of resolvase MRB58_24805 PF00239 Resolvase, N terminal domain