locus-tag class description AEQU_0002 PF00468 Ribosomal protein L34 AEQU_0005 PF02096 60Kd inner membrane protein AEQU_0005 PF14849 YidC periplasmic domain AEQU_0006 PF14804 Jag N-terminus AEQU_0006 PF01424 R3H domain AEQU_0007 PF02527 rRNA small subunit methyltransferase G AEQU_0008 PF13614 AAA domain AEQU_0009 PF02195 ParB-like nuclease domain AEQU_0009 PF17762 HTH domain found in ParB protein AEQU_0010 PF01820 D-ala D-ala ligase N-terminus AEQU_0010 PF07478 D-ala D-ala ligase C-terminus AEQU_0012 PF13307 Helicase C-terminal domain AEQU_0012 PF04851 Type III restriction enzyme, res subunit AEQU_0012 PF00929 Exonuclease AEQU_0015 PF01250 Ribosomal protein S6 AEQU_0016 PF00436 Single-strand binding protein family AEQU_0017 PF01084 Ribosomal protein S18 AEQU_0018 PF03948 Ribosomal protein L9, C-terminal domain AEQU_0018 PF01281 Ribosomal protein L9, N-terminal domain AEQU_0019 PF00772 DnaB-like helicase N terminal domain AEQU_0019 PF03796 DnaB-like helicase C terminal domain AEQU_0021 PF13514 AAA domain AEQU_0023 PF00709 Adenylosuccinate synthetase AEQU_0024 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AEQU_0024 PF02843 Phosphoribosylglycinamide synthetase, C domain AEQU_0024 PF02844 Phosphoribosylglycinamide synthetase, N domain AEQU_0025 PF04055 Radical SAM superfamily AEQU_0025 PF06969 HemN C-terminal domain AEQU_0027 PF12323 Helix-turn-helix domain AEQU_0027 PF01385 Probable transposase AEQU_0027 PF07282 Putative transposase DNA-binding domain AEQU_0028 PF12850 Calcineurin-like phosphoesterase superfamily domain AEQU_0029 PF00990 Diguanylate cyclase, GGDEF domain AEQU_0029 PF17158 Membrane-associated sensor, integral membrane domain AEQU_0031 PF14748 Pyrroline-5-carboxylate reductase dimerisation AEQU_0031 PF03807 NADP oxidoreductase coenzyme F420-dependent AEQU_0032 PF00324 Amino acid permease AEQU_0033 PF03069 Acetamidase/Formamidase family AEQU_0037 PF01381 Helix-turn-helix AEQU_0039 PF00155 Aminotransferase class I and II AEQU_0041 PF00881 Nitroreductase family AEQU_0043 PF13614 AAA domain AEQU_0044 PF02195 ParB-like nuclease domain AEQU_0044 PF17762 HTH domain found in ParB protein AEQU_0046 PF00877 NlpC/P60 family AEQU_0048 PF00271 Helicase conserved C-terminal domain AEQU_0048 PF00176 SNF2 family N-terminal domain AEQU_0051 PF00145 C-5 cytosine-specific DNA methylase AEQU_0055 PF05713 Bacterial mobilisation protein (MobC) AEQU_0056 PF03432 Relaxase/Mobilisation nuclease domain AEQU_0065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AEQU_0066 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_0068 PF00005 ABC transporter AEQU_0072 PF00501 AMP-binding enzyme AEQU_0072 PF00668 Condensation domain AEQU_0072 PF08242 Methyltransferase domain AEQU_0072 PF00550 Phosphopantetheine attachment site AEQU_0073 PF08242 Methyltransferase domain AEQU_0073 PF00550 Phosphopantetheine attachment site AEQU_0073 PF00501 AMP-binding enzyme AEQU_0073 PF00668 Condensation domain AEQU_0074 PF00501 AMP-binding enzyme AEQU_0074 PF13193 AMP-binding enzyme C-terminal domain AEQU_0074 PF00668 Condensation domain AEQU_0074 PF00550 Phosphopantetheine attachment site AEQU_0074 PF00975 Thioesterase domain AEQU_0075 PF13193 AMP-binding enzyme C-terminal domain AEQU_0075 PF00501 AMP-binding enzyme AEQU_0076 PF04954 Siderophore-interacting protein AEQU_0076 PF08021 Siderophore-interacting FAD-binding domain AEQU_0076 PF00005 ABC transporter AEQU_0076 PF00664 ABC transporter transmembrane region AEQU_0077 PF00664 ABC transporter transmembrane region AEQU_0077 PF00005 ABC transporter AEQU_0079 PF02772 S-adenosylmethionine synthetase, central domain AEQU_0079 PF00438 S-adenosylmethionine synthetase, N-terminal domain AEQU_0079 PF02773 S-adenosylmethionine synthetase, C-terminal domain AEQU_0080 PF00291 Pyridoxal-phosphate dependent enzyme AEQU_0081 PF05221 S-adenosyl-L-homocysteine hydrolase AEQU_0081 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AEQU_0082 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AEQU_0082 PF01648 4'-phosphopantetheinyl transferase superfamily AEQU_0084 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AEQU_0088 PF00171 Aldehyde dehydrogenase family AEQU_0090 PF13419 Haloacid dehalogenase-like hydrolase AEQU_0092 PF16363 GDP-mannose 4,6 dehydratase AEQU_0094 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AEQU_0094 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AEQU_0094 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AEQU_0094 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AEQU_0098 PF08753 NikR C terminal nickel binding domain AEQU_0098 PF01402 Ribbon-helix-helix protein, copG family AEQU_0099 PF02769 AIR synthase related protein, C-terminal domain AEQU_0099 PF00586 AIR synthase related protein, N-terminal domain AEQU_0102 PF08191 LRR adjacent AEQU_0102 PF12799 Leucine Rich repeats (2 copies) AEQU_0102 PF12354 Bacterial adhesion/invasion protein N terminal AEQU_0102 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) AEQU_0102 PF00746 LPXTG cell wall anchor motif AEQU_0105 PF00012 Hsp70 protein AEQU_0106 PF01025 GrpE AEQU_0107 PF00226 DnaJ domain AEQU_0107 PF01556 DnaJ C terminal domain AEQU_0107 PF00684 DnaJ central domain AEQU_0108 PF13411 MerR HTH family regulatory protein AEQU_0109 PF07724 AAA domain (Cdc48 subfamily) AEQU_0109 PF00004 ATPase family associated with various cellular activities (AAA) AEQU_0109 PF17871 AAA lid domain AEQU_0109 PF02861 Clp amino terminal domain, pathogenicity island component AEQU_0109 PF10431 C-terminal, D2-small domain, of ClpB protein AEQU_0111 PF01906 Putative heavy-metal-binding AEQU_0112 PF00375 Sodium:dicarboxylate symporter family AEQU_0113 PF01546 Peptidase family M20/M25/M40 AEQU_0114 PF00072 Response regulator receiver domain AEQU_0114 PF04397 LytTr DNA-binding domain AEQU_0115 PF00342 Phosphoglucose isomerase AEQU_0116 PF07503 HypF finger AEQU_0116 PF00708 Acylphosphatase AEQU_0116 PF17788 HypF Kae1-like domain AEQU_0116 PF01300 Telomere recombination AEQU_0117 PF01455 HupF/HypC family AEQU_0118 PF01924 Hydrogenase formation hypA family AEQU_0119 PF01541 GIY-YIG catalytic domain AEQU_0121 PF13333 Integrase core domain AEQU_0121 PF00665 Integrase core domain AEQU_0121 PF13276 HTH-like domain AEQU_0123 PF09424 Yqey-like protein AEQU_0124 PF02687 FtsX-like permease family AEQU_0125 PF00005 ABC transporter AEQU_0126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0127 PF00072 Response regulator receiver domain AEQU_0127 PF00486 Transcriptional regulatory protein, C terminal AEQU_0131 PF03703 Bacterial PH domain AEQU_0132 PF00571 CBS domain AEQU_0132 PF03471 Transporter associated domain AEQU_0134 PF02254 TrkA-N domain AEQU_0134 PF02080 TrkA-C domain AEQU_0135 PF02080 TrkA-C domain AEQU_0135 PF02254 TrkA-N domain AEQU_0137 PF01202 Shikimate kinase AEQU_0138 PF01235 Sodium:alanine symporter family AEQU_0139 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AEQU_0142 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_0144 PF13180 PDZ domain AEQU_0145 PF04055 Radical SAM superfamily AEQU_0145 PF06463 Molybdenum Cofactor Synthesis C AEQU_0146 PF13443 Cro/C1-type HTH DNA-binding domain AEQU_0151 PF00696 Amino acid kinase family AEQU_0152 PF01765 Ribosome recycling factor AEQU_0153 PF01255 Putative undecaprenyl diphosphate synthase AEQU_0155 PF13288 DXP reductoisomerase C-terminal domain AEQU_0155 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AEQU_0155 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AEQU_0157 PF17820 PDZ domain AEQU_0157 PF02163 Peptidase family M50 AEQU_0158 PF04551 GcpE protein AEQU_0159 PF04073 Aminoacyl-tRNA editing domain AEQU_0159 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AEQU_0159 PF03129 Anticodon binding domain AEQU_0160 PF01381 Helix-turn-helix AEQU_0162 PF00588 SpoU rRNA Methylase family AEQU_0162 PF08032 RNA 2'-O ribose methyltransferase substrate binding AEQU_0164 PF01381 Helix-turn-helix AEQU_0167 PF01381 Helix-turn-helix AEQU_0169 PF13180 PDZ domain AEQU_0170 PF00196 Bacterial regulatory proteins, luxR family AEQU_0170 PF00072 Response regulator receiver domain AEQU_0172 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0172 PF00384 Molybdopterin oxidoreductase AEQU_0172 PF01568 Molydopterin dinucleotide binding domain AEQU_0173 PF13247 4Fe-4S dicluster domain AEQU_0175 PF07724 AAA domain (Cdc48 subfamily) AEQU_0175 PF10431 C-terminal, D2-small domain, of ClpB protein AEQU_0175 PF17871 AAA lid domain AEQU_0175 PF02861 Clp amino terminal domain, pathogenicity island component AEQU_0175 PF00004 ATPase family associated with various cellular activities (AAA) AEQU_0178 PF01661 Macro domain AEQU_0181 PF07690 Major Facilitator Superfamily AEQU_0182 PF00486 Transcriptional regulatory protein, C terminal AEQU_0182 PF00072 Response regulator receiver domain AEQU_0183 PF00989 PAS fold AEQU_0183 PF00512 His Kinase A (phospho-acceptor) domain AEQU_0183 PF18698 Histidine kinase sensor domain AEQU_0183 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0183 PF00672 HAMP domain AEQU_0184 PF00384 Molybdopterin oxidoreductase AEQU_0184 PF01568 Molydopterin dinucleotide binding domain AEQU_0185 PF12800 4Fe-4S binding domain AEQU_0185 PF13247 4Fe-4S dicluster domain AEQU_0187 PF00005 ABC transporter AEQU_0192 PF00072 Response regulator receiver domain AEQU_0192 PF00196 Bacterial regulatory proteins, luxR family AEQU_0193 PF00384 Molybdopterin oxidoreductase AEQU_0193 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0193 PF01568 Molydopterin dinucleotide binding domain AEQU_0194 PF12800 4Fe-4S binding domain AEQU_0194 PF13247 4Fe-4S dicluster domain AEQU_0195 PF12800 4Fe-4S binding domain AEQU_0195 PF13247 4Fe-4S dicluster domain AEQU_0196 PF02613 Nitrate reductase delta subunit AEQU_0199 PF04205 FMN-binding domain AEQU_0199 PF00890 FAD binding domain AEQU_0203 PF02219 Methylenetetrahydrofolate reductase AEQU_0205 PF02310 B12 binding domain AEQU_0205 PF02574 Homocysteine S-methyltransferase AEQU_0205 PF00809 Pterin binding enzyme AEQU_0205 PF02965 Vitamin B12 dependent methionine synthase, activation domain AEQU_0205 PF02607 B12 binding domain AEQU_0207 PF10609 NUBPL iron-transfer P-loop NTPase AEQU_0209 PF01979 Amidohydrolase family AEQU_0211 PF03764 Elongation factor G, domain IV AEQU_0211 PF00679 Elongation factor G C-terminus AEQU_0211 PF03144 Elongation factor Tu domain 2 AEQU_0211 PF00009 Elongation factor Tu GTP binding domain AEQU_0211 PF14492 Elongation Factor G, domain II AEQU_0212 PF04560 RNA polymerase Rpb2, domain 7 AEQU_0212 PF04563 RNA polymerase beta subunit AEQU_0212 PF04561 RNA polymerase Rpb2, domain 2 AEQU_0212 PF04565 RNA polymerase Rpb2, domain 3 AEQU_0212 PF10385 RNA polymerase beta subunit external 1 domain AEQU_0212 PF00562 RNA polymerase Rpb2, domain 6 AEQU_0213 PF05000 RNA polymerase Rpb1, domain 4 AEQU_0213 PF04983 RNA polymerase Rpb1, domain 3 AEQU_0213 PF00623 RNA polymerase Rpb1, domain 2 AEQU_0213 PF04997 RNA polymerase Rpb1, domain 1 AEQU_0213 PF04998 RNA polymerase Rpb1, domain 5 AEQU_0214 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_0214 PF03466 LysR substrate binding domain AEQU_0217 PF02613 Nitrate reductase delta subunit AEQU_0220 PF00384 Molybdopterin oxidoreductase AEQU_0220 PF01568 Molydopterin dinucleotide binding domain AEQU_0220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0221 PF13247 4Fe-4S dicluster domain AEQU_0221 PF12800 4Fe-4S binding domain AEQU_0226 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AEQU_0227 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AEQU_0227 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AEQU_0227 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AEQU_0227 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AEQU_0230 PF00209 Sodium:neurotransmitter symporter family AEQU_0233 PF00893 Small Multidrug Resistance protein AEQU_0237 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0237 PF00384 Molybdopterin oxidoreductase AEQU_0237 PF01568 Molydopterin dinucleotide binding domain AEQU_0238 PF13247 4Fe-4S dicluster domain AEQU_0238 PF12800 4Fe-4S binding domain AEQU_0247 PF17941 Polyphosphate kinase C-terminal domain 1 AEQU_0247 PF13090 Polyphosphate kinase C-terminal domain 2 AEQU_0247 PF02503 Polyphosphate kinase middle domain AEQU_0247 PF13089 Polyphosphate kinase N-terminal domain AEQU_0248 PF03976 Polyphosphate kinase 2 (PPK2) AEQU_0249 PF04203 Sortase domain AEQU_0250 PF00156 Phosphoribosyl transferase domain AEQU_0250 PF13537 Glutamine amidotransferase domain AEQU_0251 PF02769 AIR synthase related protein, C-terminal domain AEQU_0251 PF00586 AIR synthase related protein, N-terminal domain AEQU_0252 PF00551 Formyl transferase AEQU_0253 PF02625 XdhC and CoxI family AEQU_0253 PF13478 XdhC Rossmann domain AEQU_0255 PF01808 AICARFT/IMPCHase bienzyme AEQU_0255 PF02142 MGS-like domain AEQU_0259 PF03061 Thioesterase superfamily AEQU_0260 PF00871 Acetokinase family AEQU_0261 PF00890 FAD binding domain AEQU_0262 PF00196 Bacterial regulatory proteins, luxR family AEQU_0262 PF00072 Response regulator receiver domain AEQU_0263 PF00092 von Willebrand factor type A domain AEQU_0263 PF12450 von Willebrand factor AEQU_0263 PF12034 Domain of unknown function (DUF3520) AEQU_0265 PF02416 mttA/Hcf106 family AEQU_0266 PF01272 Transcription elongation factor, GreA/GreB, C-term AEQU_0266 PF03449 Transcription elongation factor, N-terminal AEQU_0267 PF01336 OB-fold nucleic acid binding domain AEQU_0267 PF00152 tRNA synthetases class II (D, K and N) AEQU_0268 PF00027 Cyclic nucleotide-binding domain AEQU_0268 PF07885 Ion channel AEQU_0269 PF07724 AAA domain (Cdc48 subfamily) AEQU_0269 PF00004 ATPase family associated with various cellular activities (AAA) AEQU_0269 PF17871 AAA lid domain AEQU_0269 PF02861 Clp amino terminal domain, pathogenicity island component AEQU_0269 PF10431 C-terminal, D2-small domain, of ClpB protein AEQU_0270 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AEQU_0271 PF02542 YgbB family AEQU_0273 PF04539 Sigma-70 region 3 AEQU_0273 PF04542 Sigma-70 region 2 AEQU_0273 PF04545 Sigma-70, region 4 AEQU_0275 PF04607 Region found in RelA / SpoT proteins AEQU_0278 PF01406 tRNA synthetases class I (C) catalytic domain AEQU_0278 PF09190 DALR domain AEQU_0279 PF00890 FAD binding domain AEQU_0279 PF04205 FMN-binding domain AEQU_0284 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AEQU_0284 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AEQU_0285 PF02774 Semialdehyde dehydrogenase, dimerisation domain AEQU_0285 PF01118 Semialdehyde dehydrogenase, NAD binding domain AEQU_0286 PF01960 ArgJ family AEQU_0287 PF00696 Amino acid kinase family AEQU_0288 PF00202 Aminotransferase class-III AEQU_0289 PF00764 Arginosuccinate synthase AEQU_0290 PF00206 Lyase AEQU_0290 PF14698 Argininosuccinate lyase C-terminal AEQU_0291 PF00912 Transglycosylase AEQU_0291 PF00905 Penicillin binding protein transpeptidase domain AEQU_0293 PF01136 Peptidase family U32 AEQU_0293 PF12392 Collagenase AEQU_0294 PF00579 tRNA synthetases class I (W and Y) AEQU_0294 PF01479 S4 domain AEQU_0299 PF00330 Aconitase family (aconitate hydratase) AEQU_0299 PF00694 Aconitase C-terminal domain AEQU_0300 PF00152 tRNA synthetases class II (D, K and N) AEQU_0300 PF01336 OB-fold nucleic acid binding domain AEQU_0300 PF02938 GAD domain AEQU_0302 PF13247 4Fe-4S dicluster domain AEQU_0302 PF12800 4Fe-4S binding domain AEQU_0303 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0303 PF01568 Molydopterin dinucleotide binding domain AEQU_0303 PF00384 Molybdopterin oxidoreductase AEQU_0304 PF00037 4Fe-4S binding domain AEQU_0304 PF12798 4Fe-4S binding domain AEQU_0305 PF00361 Proton-conducting membrane transporter AEQU_0306 PF00146 NADH dehydrogenase AEQU_0307 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AEQU_0308 PF00361 Proton-conducting membrane transporter AEQU_0308 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AEQU_0309 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AEQU_0309 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AEQU_0309 PF00374 Nickel-dependent hydrogenase AEQU_0310 PF12838 4Fe-4S dicluster domain AEQU_0311 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AEQU_0312 PF07450 Formate hydrogenlyase maturation protein HycH AEQU_0313 PF01750 Hydrogenase maturation protease AEQU_0314 PF01226 Formate/nitrite transporter AEQU_0315 PF02634 FdhD/NarQ family AEQU_0319 PF09335 SNARE associated Golgi protein AEQU_0321 PF12169 DNA polymerase III subunits gamma and tau domain III AEQU_0322 PF02575 YbaB/EbfC DNA-binding family AEQU_0323 PF13662 Toprim domain AEQU_0323 PF00633 Helix-hairpin-helix motif AEQU_0323 PF02132 RecR protein AEQU_0326 PF03606 C4-dicarboxylate anaerobic carrier AEQU_0334 PF00557 Metallopeptidase family M24 AEQU_0336 PF00892 EamA-like transporter family AEQU_0337 PF02633 Creatinine amidohydrolase AEQU_0338 PF08946 Osmosensory transporter coiled coil AEQU_0338 PF00083 Sugar (and other) transporter AEQU_0341 PF00684 DnaJ central domain AEQU_0341 PF01556 DnaJ C terminal domain AEQU_0341 PF00226 DnaJ domain AEQU_0347 PF01869 BadF/BadG/BcrA/BcrD ATPase family AEQU_0348 PF02613 Nitrate reductase delta subunit AEQU_0350 PF12800 4Fe-4S binding domain AEQU_0350 PF13247 4Fe-4S dicluster domain AEQU_0351 PF13247 4Fe-4S dicluster domain AEQU_0351 PF12800 4Fe-4S binding domain AEQU_0352 PF00384 Molybdopterin oxidoreductase AEQU_0352 PF01568 Molydopterin dinucleotide binding domain AEQU_0352 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0353 PF00196 Bacterial regulatory proteins, luxR family AEQU_0354 PF07690 Major Facilitator Superfamily AEQU_0356 PF01568 Molydopterin dinucleotide binding domain AEQU_0356 PF00384 Molybdopterin oxidoreductase AEQU_0357 PF13247 4Fe-4S dicluster domain AEQU_0360 PF13187 4Fe-4S dicluster domain AEQU_0360 PF12838 4Fe-4S dicluster domain AEQU_0364 PF09820 Predicted AAA-ATPase AEQU_0364 PF08011 PD-(D/E)XK nuclease superfamily AEQU_0366 PF07804 HipA-like C-terminal domain AEQU_0368 PF00183 Hsp90 protein AEQU_0370 PF00588 SpoU rRNA Methylase family AEQU_0372 PF03819 MazG nucleotide pyrophosphohydrolase domain AEQU_0373 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_0373 PF03466 LysR substrate binding domain AEQU_0374 PF00890 FAD binding domain AEQU_0374 PF04205 FMN-binding domain AEQU_0375 PF01979 Amidohydrolase family AEQU_0377 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AEQU_0377 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AEQU_0378 PF00696 Amino acid kinase family AEQU_0382 PF00083 Sugar (and other) transporter AEQU_0382 PF08946 Osmosensory transporter coiled coil AEQU_0385 PF08946 Osmosensory transporter coiled coil AEQU_0385 PF00083 Sugar (and other) transporter AEQU_0387 PF00155 Aminotransferase class I and II AEQU_0389 PF00196 Bacterial regulatory proteins, luxR family AEQU_0389 PF00072 Response regulator receiver domain AEQU_0390 PF01106 NifU-like domain AEQU_0390 PF01592 NifU-like N terminal domain AEQU_0390 PF04324 BFD-like [2Fe-2S] binding domain AEQU_0393 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain AEQU_0393 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AEQU_0394 PF13247 4Fe-4S dicluster domain AEQU_0394 PF12800 4Fe-4S binding domain AEQU_0395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0395 PF00384 Molybdopterin oxidoreductase AEQU_0395 PF01568 Molydopterin dinucleotide binding domain AEQU_0396 PF12800 4Fe-4S binding domain AEQU_0396 PF13247 4Fe-4S dicluster domain AEQU_0398 PF02557 D-alanyl-D-alanine carboxypeptidase AEQU_0399 PF03852 DNA mismatch endonuclease Vsr AEQU_0400 PF00270 DEAD/DEAH box helicase AEQU_0400 PF17191 RecG wedge domain AEQU_0400 PF13749 Putative ATP-dependent DNA helicase recG C-terminal AEQU_0401 PF01174 SNO glutamine amidotransferase family AEQU_0402 PF01680 SOR/SNZ family AEQU_0403 PF00155 Aminotransferase class I and II AEQU_0403 PF00392 Bacterial regulatory proteins, gntR family AEQU_0405 PF01910 Thiamine-binding protein AEQU_0406 PF02110 Hydroxyethylthiazole kinase family AEQU_0408 PF03466 LysR substrate binding domain AEQU_0408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_0409 PF00291 Pyridoxal-phosphate dependent enzyme AEQU_0410 PF09308 LuxQ, periplasmic AEQU_0410 PF00512 His Kinase A (phospho-acceptor) domain AEQU_0410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0410 PF00072 Response regulator receiver domain AEQU_0414 PF00155 Aminotransferase class I and II AEQU_0415 PF01568 Molydopterin dinucleotide binding domain AEQU_0415 PF00384 Molybdopterin oxidoreductase AEQU_0415 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0416 PF13247 4Fe-4S dicluster domain AEQU_0417 PF06414 Zeta toxin AEQU_0419 PF12848 ABC transporter AEQU_0419 PF00005 ABC transporter AEQU_0421 PF01451 Low molecular weight phosphotyrosine protein phosphatase AEQU_0422 PF11756 Nitrous oxide-stimulated promoter AEQU_0439 PF09587 Bacterial capsule synthesis protein PGA_cap AEQU_0440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AEQU_0440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AEQU_0441 PF03060 Nitronate monooxygenase AEQU_0442 PF14765 Polyketide synthase dehydratase AEQU_0442 PF08659 KR domain AEQU_0442 PF08240 Alcohol dehydrogenase GroES-like domain AEQU_0442 PF00107 Zinc-binding dehydrogenase AEQU_0442 PF16197 Ketoacyl-synthetase C-terminal extension AEQU_0442 PF00698 Acyl transferase domain AEQU_0442 PF02801 Beta-ketoacyl synthase, C-terminal domain AEQU_0442 PF00109 Beta-ketoacyl synthase, N-terminal domain AEQU_0442 PF00550 Phosphopantetheine attachment site AEQU_0444 PF00109 Beta-ketoacyl synthase, N-terminal domain AEQU_0444 PF02801 Beta-ketoacyl synthase, C-terminal domain AEQU_0446 PF17848 Acetyl-coA carboxylase zinc finger domain AEQU_0446 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AEQU_0448 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0448 PF00512 His Kinase A (phospho-acceptor) domain AEQU_0449 PF00486 Transcriptional regulatory protein, C terminal AEQU_0449 PF00072 Response regulator receiver domain AEQU_0451 PF00005 ABC transporter AEQU_0455 PF00069 Protein kinase domain AEQU_0455 PF03793 PASTA domain AEQU_0456 PF00588 SpoU rRNA Methylase family AEQU_0459 PF02673 Bacitracin resistance protein BacA AEQU_0461 PF00392 Bacterial regulatory proteins, gntR family AEQU_0462 PF01145 SPFH domain / Band 7 family AEQU_0465 PF13657 HipA N-terminal domain AEQU_0465 PF07804 HipA-like C-terminal domain AEQU_0468 PF01568 Molydopterin dinucleotide binding domain AEQU_0468 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0468 PF00384 Molybdopterin oxidoreductase AEQU_0469 PF12800 4Fe-4S binding domain AEQU_0469 PF13247 4Fe-4S dicluster domain AEQU_0475 PF00793 DAHP synthetase I family AEQU_0475 PF18152 DAHP synthase ferredoxin-like domain AEQU_0479 PF00005 ABC transporter AEQU_0480 PF00005 ABC transporter AEQU_0481 PF02361 Cobalt transport protein AEQU_0484 PF13538 UvrD-like helicase C-terminal domain AEQU_0487 PF03577 Peptidase family C69 AEQU_0488 PF07690 Major Facilitator Superfamily AEQU_0489 PF13411 MerR HTH family regulatory protein AEQU_0489 PF07739 TipAS antibiotic-recognition domain AEQU_0492 PF00270 DEAD/DEAH box helicase AEQU_0492 PF08494 DEAD/H associated AEQU_0492 PF00271 Helicase conserved C-terminal domain AEQU_0493 PF17874 MalT-like TPR region AEQU_0493 PF00196 Bacterial regulatory proteins, luxR family AEQU_0496 PF03061 Thioesterase superfamily AEQU_0497 PF05336 L-rhamnose mutarotase AEQU_0498 PF01381 Helix-turn-helix AEQU_0500 PF03606 C4-dicarboxylate anaerobic carrier AEQU_0502 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AEQU_0502 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AEQU_0508 PF13570 PQQ-like domain AEQU_0508 PF00069 Protein kinase domain AEQU_0508 PF01011 PQQ enzyme repeat AEQU_0508 PF13360 PQQ-like domain AEQU_0509 PF17871 AAA lid domain AEQU_0509 PF00004 ATPase family associated with various cellular activities (AAA) AEQU_0509 PF07724 AAA domain (Cdc48 subfamily) AEQU_0509 PF10431 C-terminal, D2-small domain, of ClpB protein AEQU_0509 PF02861 Clp amino terminal domain, pathogenicity island component AEQU_0513 PF00484 Carbonic anhydrase AEQU_0518 PF00392 Bacterial regulatory proteins, gntR family AEQU_0519 PF01568 Molydopterin dinucleotide binding domain AEQU_0519 PF00384 Molybdopterin oxidoreductase AEQU_0519 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0520 PF00037 4Fe-4S binding domain AEQU_0520 PF13247 4Fe-4S dicluster domain AEQU_0524 PF03816 Cell envelope-related transcriptional attenuator domain AEQU_0525 PF00440 Bacterial regulatory proteins, tetR family AEQU_0526 PF01869 BadF/BadG/BcrA/BcrD ATPase family AEQU_0527 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AEQU_0532 PF01592 NifU-like N terminal domain AEQU_0533 PF00266 Aminotransferase class-V AEQU_0534 PF02082 Transcriptional regulator AEQU_0535 PF00072 Response regulator receiver domain AEQU_0535 PF09308 LuxQ, periplasmic AEQU_0535 PF00512 His Kinase A (phospho-acceptor) domain AEQU_0535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0536 PF01588 Putative tRNA binding domain AEQU_0536 PF08264 Anticodon-binding domain of tRNA AEQU_0536 PF09334 tRNA synthetases class I (M) AEQU_0537 PF01026 TatD related DNase AEQU_0539 PF13657 HipA N-terminal domain AEQU_0539 PF07804 HipA-like C-terminal domain AEQU_0541 PF00398 Ribosomal RNA adenine dimethylase AEQU_0542 PF00942 Cellulose binding domain AEQU_0542 PF00150 Cellulase (glycosyl hydrolase family 5) AEQU_0543 PF00583 Acetyltransferase (GNAT) family AEQU_0544 PF00271 Helicase conserved C-terminal domain AEQU_0544 PF00570 HRDC domain AEQU_0544 PF16124 RecQ zinc-binding AEQU_0544 PF09382 RQC domain AEQU_0544 PF00270 DEAD/DEAH box helicase AEQU_0545 PF00180 Isocitrate/isopropylmalate dehydrogenase AEQU_0546 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AEQU_0546 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AEQU_0548 PF01812 5-formyltetrahydrofolate cyclo-ligase family AEQU_0549 PF00155 Aminotransferase class I and II AEQU_0549 PF00392 Bacterial regulatory proteins, gntR family AEQU_0550 PF12800 4Fe-4S binding domain AEQU_0550 PF12838 4Fe-4S dicluster domain AEQU_0551 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0551 PF00384 Molybdopterin oxidoreductase AEQU_0551 PF01568 Molydopterin dinucleotide binding domain AEQU_0554 PF12801 4Fe-4S binding domain AEQU_0554 PF13237 4Fe-4S dicluster domain AEQU_0555 PF02335 Cytochrome c552 AEQU_0557 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AEQU_0557 PF01578 Cytochrome C assembly protein AEQU_0558 PF00005 ABC transporter AEQU_0566 PF00890 FAD binding domain AEQU_0566 PF04205 FMN-binding domain AEQU_0569 PF02424 ApbE family AEQU_0570 PF00483 Nucleotidyl transferase AEQU_0571 PF12002 MgsA AAA+ ATPase C terminal AEQU_0571 PF00004 ATPase family associated with various cellular activities (AAA) AEQU_0571 PF16193 AAA C-terminal domain AEQU_0574 PF01411 tRNA synthetases class II (A) AEQU_0574 PF02272 DHHA1 domain AEQU_0574 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AEQU_0576 PF02384 N-6 DNA Methylase AEQU_0576 PF12161 HsdM N-terminal domain AEQU_0579 PF18543 Intracellular delivery domain AEQU_0579 PF02661 Fic/DOC family AEQU_0580 PF18766 SWI2/SNF2 ATPase AEQU_0580 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AEQU_0580 PF12008 Type I restriction and modification enzyme - subunit R C terminal AEQU_0582 PF00589 Phage integrase family AEQU_0582 PF02899 Phage integrase, N-terminal SAM-like domain AEQU_0584 PF05816 Toxic anion resistance protein (TelA) AEQU_0585 PF03652 Holliday junction resolvase AEQU_0588 PF08501 Shikimate dehydrogenase substrate binding domain AEQU_0588 PF01488 Shikimate / quinate 5-dehydrogenase AEQU_0588 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AEQU_0589 PF01336 OB-fold nucleic acid binding domain AEQU_0589 PF00152 tRNA synthetases class II (D, K and N) AEQU_0590 PF01264 Chorismate synthase AEQU_0591 PF01202 Shikimate kinase AEQU_0592 PF01761 3-dehydroquinate synthase AEQU_0593 PF01220 Dehydroquinase class II AEQU_0594 PF00557 Metallopeptidase family M24 AEQU_0594 PF01321 Creatinase/Prolidase N-terminal domain AEQU_0596 PF04205 FMN-binding domain AEQU_0596 PF01794 Ferric reductase like transmembrane component AEQU_0597 PF02613 Nitrate reductase delta subunit AEQU_0598 PF13247 4Fe-4S dicluster domain AEQU_0598 PF12800 4Fe-4S binding domain AEQU_0599 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0599 PF00384 Molybdopterin oxidoreductase AEQU_0599 PF01568 Molydopterin dinucleotide binding domain AEQU_0600 PF00072 Response regulator receiver domain AEQU_0600 PF00196 Bacterial regulatory proteins, luxR family AEQU_0602 PF02645 Uncharacterised protein, DegV family COG1307 AEQU_0607 PF02436 Conserved carboxylase domain AEQU_0607 PF00364 Biotin-requiring enzyme AEQU_0607 PF00682 HMGL-like AEQU_0608 PF02785 Biotin carboxylase C-terminal domain AEQU_0608 PF00289 Biotin carboxylase, N-terminal domain AEQU_0608 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AEQU_0610 PF01029 NusB family AEQU_0612 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AEQU_0612 PF02779 Transketolase, pyrimidine binding domain AEQU_0612 PF02780 Transketolase, C-terminal domain AEQU_0614 PF00909 Ammonium Transporter Family AEQU_0615 PF00543 Nitrogen regulatory protein P-II AEQU_0619 PF01384 Phosphate transporter family AEQU_0620 PF00575 S1 RNA binding domain AEQU_0621 PF01121 Dephospho-CoA kinase AEQU_0622 PF00072 Response regulator receiver domain AEQU_0622 PF00196 Bacterial regulatory proteins, luxR family AEQU_0623 PF00890 FAD binding domain AEQU_0623 PF14537 Cytochrome c3 AEQU_0626 PF03601 Conserved hypothetical protein 698 AEQU_0627 PF02151 UvrB/uvrC motif AEQU_0627 PF12344 Ultra-violet resistance protein B AEQU_0627 PF17757 UvrB interaction domain AEQU_0627 PF00271 Helicase conserved C-terminal domain AEQU_0627 PF04851 Type III restriction enzyme, res subunit AEQU_0628 PF01522 Polysaccharide deacetylase AEQU_0629 PF02463 RecF/RecN/SMC N terminal domain AEQU_0633 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AEQU_0633 PF01409 tRNA synthetases class II core domain (F) AEQU_0635 PF03484 tRNA synthetase B5 domain AEQU_0635 PF03147 Ferredoxin-fold anticodon binding domain AEQU_0635 PF01588 Putative tRNA binding domain AEQU_0635 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AEQU_0635 PF03483 B3/4 domain AEQU_0636 PF01380 SIS domain AEQU_0638 PF01648 4'-phosphopantetheinyl transferase superfamily AEQU_0639 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0639 PF00512 His Kinase A (phospho-acceptor) domain AEQU_0639 PF00989 PAS fold AEQU_0640 PF03853 YjeF-related protein N-terminus AEQU_0640 PF01256 Carbohydrate kinase AEQU_0642 PF00533 BRCA1 C Terminus (BRCT) domain AEQU_0642 PF12826 Helix-hairpin-helix motif AEQU_0642 PF01653 NAD-dependent DNA ligase adenylation domain AEQU_0642 PF03120 NAD-dependent DNA ligase OB-fold domain AEQU_0642 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AEQU_0643 PF00877 NlpC/P60 family AEQU_0644 PF05257 CHAP domain AEQU_0644 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AEQU_0645 PF00953 Glycosyl transferase family 4 AEQU_0647 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AEQU_0649 PF00005 ABC transporter AEQU_0649 PF08239 Bacterial SH3 domain AEQU_0651 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AEQU_0652 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AEQU_0654 PF00535 Glycosyl transferase family 2 AEQU_0655 PF00535 Glycosyl transferase family 2 AEQU_0656 PF00535 Glycosyl transferase family 2 AEQU_0659 PF14849 YidC periplasmic domain AEQU_0659 PF02096 60Kd inner membrane protein AEQU_0666 PF00535 Glycosyl transferase family 2 AEQU_0670 PF01043 SecA preprotein cross-linking domain AEQU_0670 PF07516 SecA Wing and Scaffold domain AEQU_0670 PF02810 SEC-C motif AEQU_0670 PF07517 SecA DEAD-like domain AEQU_0671 PF00872 Transposase, Mutator family AEQU_0676 PF00132 Bacterial transferase hexapeptide (six repeats) AEQU_0677 PF01467 Cytidylyltransferase-like AEQU_0678 PF00155 Aminotransferase class I and II AEQU_0680 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AEQU_0680 PF00535 Glycosyl transferase family 2 AEQU_0683 PF13193 AMP-binding enzyme C-terminal domain AEQU_0683 PF00501 AMP-binding enzyme AEQU_0684 PF03062 MBOAT, membrane-bound O-acyltransferase family AEQU_0685 PF00550 Phosphopantetheine attachment site AEQU_0686 PF16363 GDP-mannose 4,6 dehydratase AEQU_0687 PF00082 Subtilase family AEQU_0690 PF04991 LicD family AEQU_0691 PF13439 Glycosyltransferase Family 4 AEQU_0691 PF00534 Glycosyl transferases group 1 AEQU_0692 PF03062 MBOAT, membrane-bound O-acyltransferase family AEQU_0694 PF00535 Glycosyl transferase family 2 AEQU_0696 PF03734 L,D-transpeptidase catalytic domain AEQU_0699 PF00892 EamA-like transporter family AEQU_0700 PF12804 MobA-like NTP transferase domain AEQU_0701 PF00301 Rubredoxin AEQU_0701 PF01613 Flavin reductase like domain AEQU_0702 PF03816 Cell envelope-related transcriptional attenuator domain AEQU_0704 PF01702 Queuine tRNA-ribosyltransferase AEQU_0705 PF02547 Queuosine biosynthesis protein AEQU_0707 PF02910 Fumarate reductase flavoprotein C-term AEQU_0707 PF00890 FAD binding domain AEQU_0709 PF00072 Response regulator receiver domain AEQU_0709 PF00196 Bacterial regulatory proteins, luxR family AEQU_0710 PF07549 SecD/SecF GG Motif AEQU_0710 PF02355 Protein export membrane protein AEQU_0712 PF00072 Response regulator receiver domain AEQU_0712 PF00196 Bacterial regulatory proteins, luxR family AEQU_0714 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AEQU_0714 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AEQU_0714 PF01488 Shikimate / quinate 5-dehydrogenase AEQU_0715 PF13186 Iron-sulfur cluster-binding domain AEQU_0715 PF04055 Radical SAM superfamily AEQU_0717 PF01032 FecCD transport family AEQU_0718 PF00005 ABC transporter AEQU_0720 PF00005 ABC transporter AEQU_0721 PF00005 ABC transporter AEQU_0722 PF02361 Cobalt transport protein AEQU_0724 PF01235 Sodium:alanine symporter family AEQU_0725 PF01235 Sodium:alanine symporter family AEQU_0728 PF01300 Telomere recombination AEQU_0729 PF12146 Serine aminopeptidase, S33 AEQU_0731 PF07728 AAA domain (dynein-related subfamily) AEQU_0731 PF12102 Domain of unknown function (DUF3578) AEQU_0732 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AEQU_0732 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AEQU_0734 PF02502 Ribose/Galactose Isomerase AEQU_0735 PF00464 Serine hydroxymethyltransferase AEQU_0737 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AEQU_0739 PF00119 ATP synthase A chain AEQU_0740 PF00137 ATP synthase subunit C AEQU_0741 PF00430 ATP synthase B/B' CF(0) AEQU_0742 PF00213 ATP synthase delta (OSCP) subunit AEQU_0743 PF02874 ATP synthase alpha/beta family, beta-barrel domain AEQU_0743 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AEQU_0743 PF00306 ATP synthase alpha/beta chain, C terminal domain AEQU_0744 PF00231 ATP synthase AEQU_0745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AEQU_0745 PF02874 ATP synthase alpha/beta family, beta-barrel domain AEQU_0746 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AEQU_0750 PF13018 Extended Signal Peptide of Type V secretion system AEQU_0750 PF03543 Yersinia/Haemophilus virulence surface antigen AEQU_0750 PF05860 haemagglutination activity domain AEQU_0750 PF02661 Fic/DOC family AEQU_0750 PF13332 Hemagglutinin repeat AEQU_0751 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AEQU_0751 PF07733 Bacterial DNA polymerase III alpha NTPase domain AEQU_0751 PF02811 PHP domain AEQU_0751 PF14579 Helix-hairpin-helix motif AEQU_0752 PF01416 tRNA pseudouridine synthase AEQU_0753 PF13375 RnfC Barrel sandwich hybrid domain AEQU_0753 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AEQU_0753 PF12838 4Fe-4S dicluster domain AEQU_0754 PF00209 Sodium:neurotransmitter symporter family AEQU_0755 PF01926 50S ribosome-binding GTPase AEQU_0755 PF06071 Protein of unknown function (DUF933) AEQU_0756 PF12728 Helix-turn-helix domain AEQU_0756 PF02661 Fic/DOC family AEQU_0757 PF07690 Major Facilitator Superfamily AEQU_0760 PF02686 Glu-tRNAGln amidotransferase C subunit AEQU_0761 PF01425 Amidase AEQU_0762 PF02637 GatB domain AEQU_0762 PF02934 GatB/GatE catalytic domain AEQU_0764 PF14535 AMP-binding enzyme C-terminal domain AEQU_0764 PF00501 AMP-binding enzyme AEQU_0766 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AEQU_0769 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AEQU_0770 PF00072 Response regulator receiver domain AEQU_0770 PF00486 Transcriptional regulatory protein, C terminal AEQU_0771 PF00989 PAS fold AEQU_0771 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0771 PF00512 His Kinase A (phospho-acceptor) domain AEQU_0772 PF02335 Cytochrome c552 AEQU_0779 PF08502 LeuA allosteric (dimerisation) domain AEQU_0779 PF00682 HMGL-like AEQU_0782 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AEQU_0782 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AEQU_0783 PF03606 C4-dicarboxylate anaerobic carrier AEQU_0784 PF00750 tRNA synthetases class I (R) AEQU_0784 PF05746 DALR anticodon binding domain AEQU_0784 PF03485 Arginyl tRNA synthetase N terminal domain AEQU_0785 PF01872 RibD C-terminal domain AEQU_0785 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AEQU_0786 PF00677 Lumazine binding domain AEQU_0787 PF00925 GTP cyclohydrolase II AEQU_0787 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AEQU_0788 PF00885 6,7-dimethyl-8-ribityllumazine synthase AEQU_0791 PF00899 ThiF family AEQU_0793 PF00999 Sodium/hydrogen exchanger family AEQU_0794 PF00579 tRNA synthetases class I (W and Y) AEQU_0796 PF00293 NUDIX domain AEQU_0797 PF16326 ABC transporter C-terminal domain AEQU_0797 PF00005 ABC transporter AEQU_0797 PF12848 ABC transporter AEQU_0798 PF00588 SpoU rRNA Methylase family AEQU_0800 PF00999 Sodium/hydrogen exchanger family AEQU_0801 PF00196 Bacterial regulatory proteins, luxR family AEQU_0802 PF00890 FAD binding domain AEQU_0802 PF04205 FMN-binding domain AEQU_0804 PF02163 Peptidase family M50 AEQU_0805 PF02616 Segregation and condensation protein ScpA AEQU_0806 PF04079 Segregation and condensation complex subunit ScpB AEQU_0807 PF01479 S4 domain AEQU_0807 PF00849 RNA pseudouridylate synthase AEQU_0808 PF02548 Ketopantoate hydroxymethyltransferase AEQU_0810 PF02261 Aspartate decarboxylase AEQU_0811 PF08546 Ketopantoate reductase PanE/ApbA C terminal AEQU_0811 PF02558 Ketopantoate reductase PanE/ApbA AEQU_0812 PF00072 Response regulator receiver domain AEQU_0812 PF09308 LuxQ, periplasmic AEQU_0812 PF00512 His Kinase A (phospho-acceptor) domain AEQU_0812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0814 PF02153 Prephenate dehydrogenase AEQU_0815 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AEQU_0816 PF02224 Cytidylate kinase AEQU_0817 PF01553 Acyltransferase AEQU_0818 PF02401 LytB protein AEQU_0820 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AEQU_0820 PF01926 50S ribosome-binding GTPase AEQU_0821 PF02660 Glycerol-3-phosphate acyltransferase AEQU_0822 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AEQU_0822 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AEQU_0824 PF00512 His Kinase A (phospho-acceptor) domain AEQU_0824 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_0824 PF00072 Response regulator receiver domain AEQU_0824 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AEQU_0824 PF00672 HAMP domain AEQU_0824 PF01627 Hpt domain AEQU_0826 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AEQU_0826 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AEQU_0827 PF00834 Ribulose-phosphate 3 epimerase family AEQU_0828 PF00266 Aminotransferase class-V AEQU_0832 PF00830 Ribosomal L28 family AEQU_0833 PF03780 Asp23 family, cell envelope-related function AEQU_0834 PF13684 Dihydroxyacetone kinase family AEQU_0834 PF02734 DAK2 domain AEQU_0835 PF17191 RecG wedge domain AEQU_0835 PF00270 DEAD/DEAH box helicase AEQU_0835 PF00271 Helicase conserved C-terminal domain AEQU_0839 PF00654 Voltage gated chloride channel AEQU_0840 PF01783 Ribosomal L32p protein family AEQU_0841 PF02504 Fatty acid synthesis protein AEQU_0842 PF14622 Ribonuclease-III-like AEQU_0842 PF00035 Double-stranded RNA binding motif AEQU_0843 PF02463 RecF/RecN/SMC N terminal domain AEQU_0843 PF06470 SMC proteins Flexible Hinge Domain AEQU_0845 PF01568 Molydopterin dinucleotide binding domain AEQU_0845 PF00384 Molybdopterin oxidoreductase AEQU_0845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0846 PF12800 4Fe-4S binding domain AEQU_0846 PF13247 4Fe-4S dicluster domain AEQU_0850 PF00266 Aminotransferase class-V AEQU_0851 PF08241 Methyltransferase domain AEQU_0852 PF01906 Putative heavy-metal-binding AEQU_0853 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AEQU_0853 PF05221 S-adenosyl-L-homocysteine hydrolase AEQU_0859 PF00005 ABC transporter AEQU_0859 PF03459 TOBE domain AEQU_0860 PF05193 Peptidase M16 inactive domain AEQU_0860 PF00675 Insulinase (Peptidase family M16) AEQU_0860 PF08367 Peptidase M16C associated AEQU_0863 PF05198 Translation initiation factor IF-3, N-terminal domain AEQU_0863 PF00707 Translation initiation factor IF-3, C-terminal domain AEQU_0864 PF01632 Ribosomal protein L35 AEQU_0865 PF00453 Ribosomal protein L20 AEQU_0867 PF00271 Helicase conserved C-terminal domain AEQU_0867 PF00270 DEAD/DEAH box helicase AEQU_0868 PF04101 Glycosyltransferase family 28 C-terminal domain AEQU_0868 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AEQU_0869 PF00535 Glycosyl transferase family 2 AEQU_0871 PF00781 Diacylglycerol kinase catalytic domain AEQU_0872 PF05958 tRNA (Uracil-5-)-methyltransferase AEQU_0872 PF01938 TRAM domain AEQU_0873 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AEQU_0875 PF00334 Nucleoside diphosphate kinase AEQU_0877 PF00175 Oxidoreductase NAD-binding domain AEQU_0877 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AEQU_0879 PF00374 Nickel-dependent hydrogenase AEQU_0881 PF04085 rod shape-determining protein MreC AEQU_0883 PF00905 Penicillin binding protein transpeptidase domain AEQU_0883 PF03717 Penicillin-binding Protein dimerisation domain AEQU_0884 PF01098 Cell cycle protein AEQU_0888 PF01230 HIT domain AEQU_0889 PF00291 Pyridoxal-phosphate dependent enzyme AEQU_0891 PF03063 Prismane/CO dehydrogenase family AEQU_0892 PF00293 NUDIX domain AEQU_0892 PF09297 NADH pyrophosphatase zinc ribbon domain AEQU_0893 PF01145 SPFH domain / Band 7 family AEQU_0895 PF01351 Ribonuclease HII AEQU_0896 PF02021 Uncharacterised protein family UPF0102 AEQU_0897 PF01078 Magnesium chelatase, subunit ChlI AEQU_0897 PF13335 Magnesium chelatase, subunit ChlI C-terminal AEQU_0898 PF02481 DNA recombination-mediator protein A AEQU_0898 PF17782 DprA winged helix domain AEQU_0899 PF01134 Glucose inhibited division protein A AEQU_0900 PF00589 Phage integrase family AEQU_0900 PF02899 Phage integrase, N-terminal SAM-like domain AEQU_0903 PF17755 UvrA DNA-binding domain AEQU_0903 PF17760 UvrA interaction domain AEQU_0905 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AEQU_0905 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AEQU_0907 PF00817 impB/mucB/samB family AEQU_0907 PF11799 impB/mucB/samB family C-terminal domain AEQU_0907 PF11798 IMS family HHH motif AEQU_0917 PF13361 UvrD-like helicase C-terminal domain AEQU_0917 PF00580 UvrD/REP helicase N-terminal domain AEQU_0917 PF12705 PD-(D/E)XK nuclease superfamily AEQU_0920 PF03466 LysR substrate binding domain AEQU_0920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_0921 PF00890 FAD binding domain AEQU_0921 PF04205 FMN-binding domain AEQU_0923 PF00890 FAD binding domain AEQU_0923 PF04205 FMN-binding domain AEQU_0923 PF03358 NADPH-dependent FMN reductase AEQU_0924 PF00072 Response regulator receiver domain AEQU_0924 PF00196 Bacterial regulatory proteins, luxR family AEQU_0926 PF00266 Aminotransferase class-V AEQU_0927 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AEQU_0927 PF01842 ACT domain AEQU_0927 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AEQU_0929 PF00682 HMGL-like AEQU_0929 PF08502 LeuA allosteric (dimerisation) domain AEQU_0931 PF00501 AMP-binding enzyme AEQU_0931 PF13193 AMP-binding enzyme C-terminal domain AEQU_0934 PF07992 Pyridine nucleotide-disulphide oxidoreductase AEQU_0934 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AEQU_0935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AEQU_0935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AEQU_0935 PF02770 Acyl-CoA dehydrogenase, middle domain AEQU_0937 PF01467 Cytidylyltransferase-like AEQU_0938 PF01012 Electron transfer flavoprotein domain AEQU_0939 PF01012 Electron transfer flavoprotein domain AEQU_0939 PF00766 Electron transfer flavoprotein FAD-binding domain AEQU_0940 PF02665 Nitrate reductase gamma subunit AEQU_0940 PF02754 Cysteine-rich domain AEQU_0940 PF13183 4Fe-4S dicluster domain AEQU_0943 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AEQU_0943 PF02770 Acyl-CoA dehydrogenase, middle domain AEQU_0943 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AEQU_0944 PF00501 AMP-binding enzyme AEQU_0944 PF13193 AMP-binding enzyme C-terminal domain AEQU_0945 PF13193 AMP-binding enzyme C-terminal domain AEQU_0945 PF00501 AMP-binding enzyme AEQU_0946 PF00378 Enoyl-CoA hydratase/isomerase AEQU_0948 PF04205 FMN-binding domain AEQU_0948 PF00890 FAD binding domain AEQU_0951 PF01568 Molydopterin dinucleotide binding domain AEQU_0951 PF00384 Molybdopterin oxidoreductase AEQU_0951 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0952 PF12800 4Fe-4S binding domain AEQU_0952 PF13247 4Fe-4S dicluster domain AEQU_0956 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0956 PF00384 Molybdopterin oxidoreductase AEQU_0956 PF01568 Molydopterin dinucleotide binding domain AEQU_0957 PF12800 4Fe-4S binding domain AEQU_0957 PF13247 4Fe-4S dicluster domain AEQU_0958 PF02515 CoA-transferase family III AEQU_0959 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AEQU_0959 PF02770 Acyl-CoA dehydrogenase, middle domain AEQU_0959 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AEQU_0961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_0961 PF03466 LysR substrate binding domain AEQU_0962 PF02576 RimP N-terminal domain AEQU_0962 PF17384 RimP C-terminal SH3 domain AEQU_0963 PF08529 NusA N-terminal domain AEQU_0963 PF13184 NusA-like KH domain AEQU_0963 PF00575 S1 RNA binding domain AEQU_0965 PF00009 Elongation factor Tu GTP binding domain AEQU_0965 PF04760 Translation initiation factor IF-2, N-terminal region AEQU_0965 PF11987 Translation-initiation factor 2 AEQU_0965 PF11987 Translation-initiation factor 2 AEQU_0965 PF00009 Elongation factor Tu GTP binding domain AEQU_0965 PF04760 Translation initiation factor IF-2, N-terminal region AEQU_0966 PF02033 Ribosome-binding factor A AEQU_0967 PF02272 DHHA1 domain AEQU_0967 PF01368 DHH family AEQU_0968 PF16198 tRNA pseudouridylate synthase B C-terminal domain AEQU_0968 PF01509 TruB family pseudouridylate synthase (N terminal domain) AEQU_0969 PF06574 FAD synthetase AEQU_0969 PF01687 Riboflavin kinase AEQU_0970 PF00884 Sulfatase AEQU_0971 PF01541 GIY-YIG catalytic domain AEQU_0971 PF02151 UvrB/uvrC motif AEQU_0971 PF08459 UvrC Helix-hairpin-helix N-terminal AEQU_0972 PF03668 P-loop ATPase protein family AEQU_0973 PF01933 Uncharacterised protein family UPF0052 AEQU_0974 PF02650 WhiA C-terminal HTH domain AEQU_0974 PF14527 WhiA LAGLIDADG-like domain AEQU_0974 PF10298 WhiA N-terminal LAGLIDADG-like domain AEQU_0975 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AEQU_0975 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AEQU_0976 PF00162 Phosphoglycerate kinase AEQU_0977 PF00121 Triosephosphate isomerase AEQU_0978 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AEQU_0978 PF01676 Metalloenzyme superfamily AEQU_0979 PF03840 Preprotein translocase SecG subunit AEQU_0980 PF01545 Cation efflux family AEQU_0980 PF16916 Dimerisation domain of Zinc Transporter AEQU_0982 PF03741 Integral membrane protein TerC family AEQU_0984 PF02899 Phage integrase, N-terminal SAM-like domain AEQU_0984 PF00589 Phage integrase family AEQU_0991 PF13520 Amino acid permease AEQU_0992 PF00781 Diacylglycerol kinase catalytic domain AEQU_0993 PF00570 HRDC domain AEQU_0993 PF01612 3'-5' exonuclease AEQU_0994 PF04298 Putative neutral zinc metallopeptidase AEQU_0995 PF13742 OB-fold nucleic acid binding domain AEQU_0995 PF02601 Exonuclease VII, large subunit AEQU_0996 PF02609 Exonuclease VII small subunit AEQU_0997 PF00871 Acetokinase family AEQU_0998 PF00890 FAD binding domain AEQU_0998 PF04205 FMN-binding domain AEQU_0999 PF00196 Bacterial regulatory proteins, luxR family AEQU_1001 PF03275 UDP-galactopyranose mutase AEQU_1002 PF00535 Glycosyl transferase family 2 AEQU_1003 PF03309 Type III pantothenate kinase AEQU_1004 PF11798 IMS family HHH motif AEQU_1004 PF00817 impB/mucB/samB family AEQU_1004 PF11799 impB/mucB/samB family C-terminal domain AEQU_1005 PF02645 Uncharacterised protein, DegV family COG1307 AEQU_1006 PF06827 Zinc finger found in FPG and IleRS AEQU_1006 PF00133 tRNA synthetases class I (I, L, M and V) AEQU_1006 PF08264 Anticodon-binding domain of tRNA AEQU_1007 PF01252 Signal peptidase (SPase) II AEQU_1008 PF00849 RNA pseudouridylate synthase AEQU_1008 PF01479 S4 domain AEQU_1009 PF00762 Ferrochelatase AEQU_1011 PF00890 FAD binding domain AEQU_1011 PF02910 Fumarate reductase flavoprotein C-term AEQU_1012 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_1012 PF03466 LysR substrate binding domain AEQU_1013 PF14537 Cytochrome c3 AEQU_1013 PF00890 FAD binding domain AEQU_1014 PF04205 FMN-binding domain AEQU_1014 PF00890 FAD binding domain AEQU_1015 PF00072 Response regulator receiver domain AEQU_1015 PF00196 Bacterial regulatory proteins, luxR family AEQU_1016 PF04055 Radical SAM superfamily AEQU_1016 PF06969 HemN C-terminal domain AEQU_1017 PF00890 FAD binding domain AEQU_1017 PF04205 FMN-binding domain AEQU_1018 PF00072 Response regulator receiver domain AEQU_1018 PF00196 Bacterial regulatory proteins, luxR family AEQU_1020 PF05525 Branched-chain amino acid transport protein AEQU_1021 PF00361 Proton-conducting membrane transporter AEQU_1021 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AEQU_1021 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AEQU_1021 PF13244 Domain of unknown function (DUF4040) AEQU_1022 PF00146 NADH dehydrogenase AEQU_1023 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AEQU_1025 PF00374 Nickel-dependent hydrogenase AEQU_1025 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AEQU_1026 PF12838 4Fe-4S dicluster domain AEQU_1028 PF04294 VanW like protein AEQU_1029 PF00501 AMP-binding enzyme AEQU_1029 PF14535 AMP-binding enzyme C-terminal domain AEQU_1031 PF00768 D-alanyl-D-alanine carboxypeptidase AEQU_1031 PF07943 Penicillin-binding protein 5, C-terminal domain AEQU_1036 PF00501 AMP-binding enzyme AEQU_1036 PF14535 AMP-binding enzyme C-terminal domain AEQU_1037 PF00749 tRNA synthetases class I (E and Q), catalytic domain AEQU_1048 PF01719 Plasmid replication protein AEQU_1050 PF00692 dUTPase AEQU_1051 PF03477 ATP cone domain AEQU_1052 PF00717 Peptidase S24-like AEQU_1052 PF01726 LexA DNA binding domain AEQU_1053 PF01926 50S ribosome-binding GTPase AEQU_1053 PF13167 GTP-binding GTPase N-terminal AEQU_1053 PF16360 GTP-binding GTPase Middle Region AEQU_1054 PF01678 Diaminopimelate epimerase AEQU_1056 PF04055 Radical SAM superfamily AEQU_1056 PF01938 TRAM domain AEQU_1056 PF00919 Uncharacterized protein family UPF0004 AEQU_1057 PF04232 Stage V sporulation protein S (SpoVS) AEQU_1059 PF01966 HD domain AEQU_1059 PF00013 KH domain AEQU_1059 PF12072 Domain of unknown function (DUF3552) AEQU_1061 PF00154 recA bacterial DNA recombination protein AEQU_1062 PF01066 CDP-alcohol phosphatidyltransferase AEQU_1063 PF04055 Radical SAM superfamily AEQU_1063 PF18693 TRAM domain AEQU_1063 PF00919 Uncharacterized protein family UPF0004 AEQU_1064 PF04461 Protein of unknown function (DUF520) AEQU_1066 PF17854 FtsK alpha domain AEQU_1066 PF01580 FtsK/SpoIIIE family AEQU_1066 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AEQU_1066 PF09397 Ftsk gamma domain AEQU_1067 PF00753 Metallo-beta-lactamase superfamily AEQU_1067 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AEQU_1067 PF17770 Ribonuclease J C-terminal domain AEQU_1068 PF00701 Dihydrodipicolinate synthetase family AEQU_1069 PF05173 Dihydrodipicolinate reductase, C-terminus AEQU_1069 PF01113 Dihydrodipicolinate reductase, N-terminus AEQU_1070 PF00575 S1 RNA binding domain AEQU_1070 PF03725 3' exoribonuclease family, domain 2 AEQU_1070 PF01138 3' exoribonuclease family, domain 1 AEQU_1070 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AEQU_1070 PF00013 KH domain AEQU_1071 PF00312 Ribosomal protein S15 AEQU_1072 PF02565 Recombination protein O C terminal AEQU_1072 PF11967 Recombination protein O N terminal AEQU_1074 PF01926 50S ribosome-binding GTPase AEQU_1074 PF07650 KH domain AEQU_1075 PF01219 Prokaryotic diacylglycerol kinase AEQU_1076 PF02130 Uncharacterized protein family UPF0054 AEQU_1077 PF02562 PhoH-like protein AEQU_1078 PF00919 Uncharacterized protein family UPF0004 AEQU_1078 PF01938 TRAM domain AEQU_1078 PF04055 Radical SAM superfamily AEQU_1079 PF04452 RNA methyltransferase AEQU_1080 PF08220 DeoR-like helix-turn-helix domain AEQU_1080 PF01628 HrcA protein C terminal domain AEQU_1081 PF00226 DnaJ domain AEQU_1081 PF01556 DnaJ C terminal domain AEQU_1081 PF00684 DnaJ central domain AEQU_1082 PF04055 Radical SAM superfamily AEQU_1084 PF01207 Dihydrouridine synthase (Dus) AEQU_1087 PF06421 GTP-binding protein LepA C-terminus AEQU_1087 PF00009 Elongation factor Tu GTP binding domain AEQU_1087 PF00679 Elongation factor G C-terminus AEQU_1087 PF03144 Elongation factor Tu domain 2 AEQU_1088 PF01649 Ribosomal protein S20 AEQU_1091 PF00753 Metallo-beta-lactamase superfamily AEQU_1091 PF13567 Domain of unknown function (DUF4131) AEQU_1091 PF03772 Competence protein AEQU_1092 PF10531 SLBB domain AEQU_1093 PF02926 THUMP domain AEQU_1093 PF02568 Thiamine biosynthesis protein (ThiI) AEQU_1095 PF00625 Guanylate kinase AEQU_1097 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AEQU_1098 PF01180 Dihydroorotate dehydrogenase AEQU_1099 PF00175 Oxidoreductase NAD-binding domain AEQU_1099 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AEQU_1100 PF02142 MGS-like domain AEQU_1100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AEQU_1100 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AEQU_1101 PF00117 Glutamine amidotransferase class-I AEQU_1101 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AEQU_1102 PF00005 ABC transporter AEQU_1103 PF01032 FecCD transport family AEQU_1104 PF01032 FecCD transport family AEQU_1105 PF01497 Periplasmic binding protein AEQU_1106 PF01979 Amidohydrolase family AEQU_1107 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AEQU_1107 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AEQU_1108 PF00156 Phosphoribosyl transferase domain AEQU_1109 PF02915 Rubrerythrin AEQU_1111 PF00501 AMP-binding enzyme AEQU_1111 PF13193 AMP-binding enzyme C-terminal domain AEQU_1116 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AEQU_1116 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AEQU_1116 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AEQU_1118 PF13193 AMP-binding enzyme C-terminal domain AEQU_1118 PF00501 AMP-binding enzyme AEQU_1120 PF01029 NusB family AEQU_1120 PF01189 16S rRNA methyltransferase RsmB/F AEQU_1121 PF00551 Formyl transferase AEQU_1121 PF02911 Formyl transferase, C-terminal domain AEQU_1122 PF01327 Polypeptide deformylase AEQU_1123 PF10410 DnaB-helicase binding domain of primase AEQU_1123 PF08278 DNA primase DnaG DnaB-binding AEQU_1123 PF13662 Toprim domain AEQU_1123 PF08275 DNA primase catalytic core, N-terminal domain AEQU_1123 PF01807 CHC2 zinc finger AEQU_1124 PF01966 HD domain AEQU_1124 PF13286 Phosphohydrolase-associated domain AEQU_1125 PF00075 RNase H AEQU_1127 PF02416 mttA/Hcf106 family AEQU_1128 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AEQU_1128 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AEQU_1129 PF10369 Small subunit of acetolactate synthase AEQU_1130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AEQU_1130 PF00205 Thiamine pyrophosphate enzyme, central domain AEQU_1130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AEQU_1133 PF00132 Bacterial transferase hexapeptide (six repeats) AEQU_1134 PF01048 Phosphorylase superfamily AEQU_1135 PF05175 Methyltransferase small domain AEQU_1135 PF17827 PrmC N-terminal domain AEQU_1136 PF00472 RF-1 domain AEQU_1136 PF03462 PCRF domain AEQU_1138 PF02613 Nitrate reductase delta subunit AEQU_1139 PF13247 4Fe-4S dicluster domain AEQU_1139 PF12800 4Fe-4S binding domain AEQU_1140 PF01568 Molydopterin dinucleotide binding domain AEQU_1140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1140 PF00384 Molybdopterin oxidoreductase AEQU_1141 PF00072 Response regulator receiver domain AEQU_1141 PF00196 Bacterial regulatory proteins, luxR family AEQU_1142 PF00999 Sodium/hydrogen exchanger family AEQU_1142 PF02080 TrkA-C domain AEQU_1142 PF02254 TrkA-N domain AEQU_1143 PF00085 Thioredoxin AEQU_1144 PF07992 Pyridine nucleotide-disulphide oxidoreductase AEQU_1145 PF00474 Sodium:solute symporter family AEQU_1147 PF02824 TGS domain AEQU_1147 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AEQU_1147 PF03129 Anticodon binding domain AEQU_1147 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AEQU_1150 PF08264 Anticodon-binding domain of tRNA AEQU_1150 PF00133 tRNA synthetases class I (I, L, M and V) AEQU_1150 PF10458 Valyl tRNA synthetase tRNA binding arm AEQU_1151 PF10431 C-terminal, D2-small domain, of ClpB protein AEQU_1151 PF07724 AAA domain (Cdc48 subfamily) AEQU_1151 PF06689 ClpX C4-type zinc finger AEQU_1152 PF00574 Clp protease AEQU_1153 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AEQU_1153 PF05697 Bacterial trigger factor protein (TF) AEQU_1153 PF05698 Bacterial trigger factor protein (TF) C-terminus AEQU_1157 PF07969 Amidohydrolase family AEQU_1160 PF00375 Sodium:dicarboxylate symporter family AEQU_1161 PF01510 N-acetylmuramoyl-L-alanine amidase AEQU_1161 PF01473 Putative cell wall binding repeat AEQU_1168 PF03454 MoeA C-terminal region (domain IV) AEQU_1168 PF03453 MoeA N-terminal region (domain I and II) AEQU_1168 PF00994 Probable molybdopterin binding domain AEQU_1181 PF00574 Clp protease AEQU_1196 PF00712 DNA polymerase III beta subunit, N-terminal domain AEQU_1196 PF02768 DNA polymerase III beta subunit, C-terminal domain AEQU_1196 PF02767 DNA polymerase III beta subunit, central domain AEQU_1205 PF01381 Helix-turn-helix AEQU_1206 PF00520 Ion transport protein AEQU_1206 PF00027 Cyclic nucleotide-binding domain AEQU_1208 PF01170 Putative RNA methylase family UPF0020 AEQU_1208 PF02926 THUMP domain AEQU_1208 PF10672 S-adenosylmethionine-dependent methyltransferase AEQU_1209 PF04542 Sigma-70 region 2 AEQU_1209 PF04545 Sigma-70, region 4 AEQU_1209 PF04539 Sigma-70 region 3 AEQU_1209 PF03979 Sigma-70 factor, region 1.1 AEQU_1209 PF00140 Sigma-70 factor, region 1.2 AEQU_1210 PF00486 Transcriptional regulatory protein, C terminal AEQU_1210 PF00072 Response regulator receiver domain AEQU_1211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1211 PF00512 His Kinase A (phospho-acceptor) domain AEQU_1211 PF09308 LuxQ, periplasmic AEQU_1211 PF00072 Response regulator receiver domain AEQU_1212 PF13247 4Fe-4S dicluster domain AEQU_1212 PF12800 4Fe-4S binding domain AEQU_1213 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1213 PF01568 Molydopterin dinucleotide binding domain AEQU_1213 PF00384 Molybdopterin oxidoreductase AEQU_1216 PF00890 FAD binding domain AEQU_1216 PF14537 Cytochrome c3 AEQU_1217 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AEQU_1217 PF18074 Primosomal protein N C-terminal domain AEQU_1217 PF17764 3′ DNA-binding domain (3′BD) AEQU_1217 PF00271 Helicase conserved C-terminal domain AEQU_1217 PF04851 Type III restriction enzyme, res subunit AEQU_1218 PF04073 Aminoacyl-tRNA editing domain AEQU_1227 PF00749 tRNA synthetases class I (E and Q), catalytic domain AEQU_1231 PF03461 TRCF domain AEQU_1231 PF17757 UvrB interaction domain AEQU_1231 PF00271 Helicase conserved C-terminal domain AEQU_1231 PF02559 CarD-like/TRCF domain AEQU_1231 PF00270 DEAD/DEAH box helicase AEQU_1232 PF00730 HhH-GPD superfamily base excision DNA repair protein AEQU_1232 PF00633 Helix-hairpin-helix motif AEQU_1235 PF01061 ABC-2 type transporter AEQU_1236 PF01061 ABC-2 type transporter AEQU_1238 PF00374 Nickel-dependent hydrogenase AEQU_1239 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AEQU_1239 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AEQU_1240 PF00800 Prephenate dehydratase AEQU_1240 PF01817 Chorismate mutase type II AEQU_1240 PF01842 ACT domain AEQU_1243 PF02659 Putative manganese efflux pump AEQU_1244 PF00730 HhH-GPD superfamily base excision DNA repair protein AEQU_1244 PF14815 NUDIX domain AEQU_1244 PF00633 Helix-hairpin-helix motif AEQU_1247 PF00005 ABC transporter AEQU_1247 PF00664 ABC transporter transmembrane region AEQU_1248 PF00005 ABC transporter AEQU_1248 PF00664 ABC transporter transmembrane region AEQU_1250 PF03591 AzlC protein AEQU_1253 PF13614 AAA domain AEQU_1255 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AEQU_1255 PF02896 PEP-utilising enzyme, TIM barrel domain AEQU_1255 PF00391 PEP-utilising enzyme, mobile domain AEQU_1257 PF03618 Kinase/pyrophosphorylase AEQU_1258 PF02092 Glycyl-tRNA synthetase beta subunit AEQU_1258 PF05746 DALR anticodon binding domain AEQU_1259 PF02091 Glycyl-tRNA synthetase alpha subunit AEQU_1260 PF10502 Signal peptidase, peptidase S26 AEQU_1261 PF01746 tRNA (Guanine-1)-methyltransferase AEQU_1262 PF01782 RimM N-terminal domain AEQU_1262 PF05239 PRC-barrel domain AEQU_1264 PF00886 Ribosomal protein S16 AEQU_1265 PF00005 ABC transporter AEQU_1265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AEQU_1266 PF00005 ABC transporter AEQU_1266 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AEQU_1267 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_1267 PF12911 N-terminal TM domain of oligopeptide transport permease C AEQU_1268 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_1269 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AEQU_1270 PF02881 SRP54-type protein, helical bundle domain AEQU_1270 PF00448 SRP54-type protein, GTPase domain AEQU_1270 PF02978 Signal peptide binding domain AEQU_1271 PF00448 SRP54-type protein, GTPase domain AEQU_1271 PF02881 SRP54-type protein, helical bundle domain AEQU_1272 PF00209 Sodium:neurotransmitter symporter family AEQU_1274 PF12800 4Fe-4S binding domain AEQU_1274 PF13247 4Fe-4S dicluster domain AEQU_1275 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1275 PF01568 Molydopterin dinucleotide binding domain AEQU_1275 PF00384 Molybdopterin oxidoreductase AEQU_1276 PF01145 SPFH domain / Band 7 family AEQU_1279 PF00575 S1 RNA binding domain AEQU_1279 PF00773 RNB domain AEQU_1279 PF08206 Ribonuclease B OB domain AEQU_1279 PF17876 Cold shock domain AEQU_1280 PF03572 Peptidase family S41 AEQU_1280 PF17804 Tail specific protease N-terminal domain AEQU_1280 PF00595 PDZ domain AEQU_1280 PF11818 C-terminal domain of tail specific protease (DUF3340) AEQU_1281 PF18075 FtsX extracellular domain AEQU_1281 PF02687 FtsX-like permease family AEQU_1282 PF00005 ABC transporter AEQU_1283 PF02780 Transketolase, C-terminal domain AEQU_1283 PF02779 Transketolase, pyrimidine binding domain AEQU_1284 PF02780 Transketolase, C-terminal domain AEQU_1284 PF02779 Transketolase, pyrimidine binding domain AEQU_1284 PF00456 Transketolase, thiamine diphosphate binding domain AEQU_1289 PF00472 RF-1 domain AEQU_1289 PF03462 PCRF domain AEQU_1290 PF07517 SecA DEAD-like domain AEQU_1290 PF02810 SEC-C motif AEQU_1290 PF07516 SecA Wing and Scaffold domain AEQU_1290 PF01043 SecA preprotein cross-linking domain AEQU_1293 PF02322 Cytochrome bd terminal oxidase subunit II AEQU_1294 PF01654 Cytochrome bd terminal oxidase subunit I AEQU_1297 PF01966 HD domain AEQU_1297 PF01467 Cytidylyltransferase-like AEQU_1298 PF01467 Cytidylyltransferase-like AEQU_1299 PF00171 Aldehyde dehydrogenase family AEQU_1300 PF00696 Amino acid kinase family AEQU_1300 PF01472 PUA domain AEQU_1301 PF09269 Domain of unknown function (DUF1967) AEQU_1301 PF01926 50S ribosome-binding GTPase AEQU_1301 PF01018 GTP1/OBG AEQU_1303 PF01016 Ribosomal L27 protein AEQU_1304 PF00829 Ribosomal prokaryotic L21 protein AEQU_1305 PF03606 C4-dicarboxylate anaerobic carrier AEQU_1308 PF00072 Response regulator receiver domain AEQU_1308 PF00196 Bacterial regulatory proteins, luxR family AEQU_1309 PF01367 5'-3' exonuclease, C-terminal SAM fold AEQU_1309 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AEQU_1309 PF00476 DNA polymerase family A AEQU_1310 PF00486 Transcriptional regulatory protein, C terminal AEQU_1311 PF03951 Glutamine synthetase, beta-Grasp domain AEQU_1311 PF00120 Glutamine synthetase, catalytic domain AEQU_1312 PF01197 Ribosomal protein L31 AEQU_1313 PF01880 Desulfoferrodoxin AEQU_1314 PF01790 Prolipoprotein diacylglyceryl transferase AEQU_1317 PF01106 NifU-like domain AEQU_1317 PF01521 Iron-sulphur cluster biosynthesis AEQU_1319 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AEQU_1320 PF00889 Elongation factor TS AEQU_1321 PF00318 Ribosomal protein S2 AEQU_1324 PF08264 Anticodon-binding domain of tRNA AEQU_1324 PF01588 Putative tRNA binding domain AEQU_1324 PF09334 tRNA synthetases class I (M) AEQU_1325 PF01343 Peptidase family S49 AEQU_1326 PF07497 Rho termination factor, RNA-binding domain AEQU_1326 PF07498 Rho termination factor, N-terminal domain AEQU_1326 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AEQU_1327 PF00923 Transaldolase/Fructose-6-phosphate aldolase AEQU_1328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_1328 PF03466 LysR substrate binding domain AEQU_1329 PF00892 EamA-like transporter family AEQU_1330 PF01502 Phosphoribosyl-AMP cyclohydrolase AEQU_1335 PF00977 Histidine biosynthesis protein AEQU_1336 PF00977 Histidine biosynthesis protein AEQU_1337 PF00475 Imidazoleglycerol-phosphate dehydratase AEQU_1338 PF00117 Glutamine amidotransferase class-I AEQU_1339 PF00155 Aminotransferase class I and II AEQU_1340 PF00815 Histidinol dehydrogenase AEQU_1341 PF01634 ATP phosphoribosyltransferase AEQU_1342 PF01969 Protein of unknown function DUF111 AEQU_1343 PF00731 AIR carboxylase AEQU_1344 PF13411 MerR HTH family regulatory protein AEQU_1345 PF01725 Ham1 family AEQU_1346 PF01177 Asp/Glu/Hydantoin racemase AEQU_1348 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AEQU_1350 PF01668 SmpB protein AEQU_1351 PF05343 M42 glutamyl aminopeptidase AEQU_1353 PF00156 Phosphoribosyl transferase domain AEQU_1356 PF02645 Uncharacterised protein, DegV family COG1307 AEQU_1359 PF02645 Uncharacterised protein, DegV family COG1307 AEQU_1360 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AEQU_1360 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AEQU_1360 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AEQU_1361 PF04468 PSP1 C-terminal conserved region AEQU_1362 PF09115 DNA polymerase III, delta subunit, C terminal AEQU_1363 PF02223 Thymidylate kinase AEQU_1364 PF00390 Malic enzyme, N-terminal domain AEQU_1364 PF03949 Malic enzyme, NAD binding domain AEQU_1365 PF05681 Fumarate hydratase (Fumerase) AEQU_1366 PF05681 Fumarate hydratase (Fumerase) AEQU_1366 PF05683 Fumarase C-terminus AEQU_1368 PF01751 Toprim domain AEQU_1368 PF01131 DNA topoisomerase AEQU_1374 PF07739 TipAS antibiotic-recognition domain AEQU_1374 PF13411 MerR HTH family regulatory protein AEQU_1375 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_1376 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_1377 PF00497 Bacterial extracellular solute-binding proteins, family 3 AEQU_1378 PF00005 ABC transporter AEQU_1379 PF07136 Protein of unknown function (DUF1385) AEQU_1380 PF02511 Thymidylate synthase complementing protein AEQU_1381 PF01209 ubiE/COQ5 methyltransferase family AEQU_1382 PF00313 'Cold-shock' DNA-binding domain AEQU_1384 PF05496 Holliday junction DNA helicase RuvB P-loop domain AEQU_1384 PF17864 RuvB AAA lid domain AEQU_1384 PF05491 RuvB C-terminal winged helix domain AEQU_1385 PF07499 RuvA, C-terminal domain AEQU_1385 PF01330 RuvA N terminal domain AEQU_1386 PF02075 Crossover junction endodeoxyribonuclease RuvC AEQU_1388 PF01709 Transcriptional regulator AEQU_1389 PF17874 MalT-like TPR region AEQU_1389 PF00196 Bacterial regulatory proteins, luxR family AEQU_1391 PF01967 MoaC family AEQU_1392 PF06463 Molybdenum Cofactor Synthesis C AEQU_1392 PF04055 Radical SAM superfamily AEQU_1394 PF01794 Ferric reductase like transmembrane component AEQU_1394 PF04205 FMN-binding domain AEQU_1396 PF13247 4Fe-4S dicluster domain AEQU_1396 PF00037 4Fe-4S binding domain AEQU_1397 PF01568 Molydopterin dinucleotide binding domain AEQU_1397 PF00384 Molybdopterin oxidoreductase AEQU_1397 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1399 PF08402 TOBE domain AEQU_1399 PF00005 ABC transporter AEQU_1400 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_1403 PF13735 tRNA nucleotidyltransferase domain 2 putative AEQU_1403 PF12627 Probable RNA and SrmB- binding site of polymerase A AEQU_1403 PF01743 Poly A polymerase head domain AEQU_1404 PF01925 Sulfite exporter TauE/SafE AEQU_1407 PF04205 FMN-binding domain AEQU_1407 PF00890 FAD binding domain AEQU_1408 PF08543 Phosphomethylpyrimidine kinase AEQU_1409 PF00857 Isochorismatase family AEQU_1410 PF02581 Thiamine monophosphate synthase AEQU_1411 PF01964 Radical SAM ThiC family AEQU_1414 PF02325 YGGT family AEQU_1415 PF04472 Cell division protein SepF AEQU_1416 PF01168 Alanine racemase, N-terminal domain AEQU_1418 PF00091 Tubulin/FtsZ family, GTPase domain AEQU_1418 PF12327 FtsZ family, C-terminal domain AEQU_1419 PF03799 Cell division protein FtsQ AEQU_1419 PF08478 POTRA domain, FtsQ-type AEQU_1420 PF01565 FAD binding domain AEQU_1420 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AEQU_1421 PF08245 Mur ligase middle domain AEQU_1421 PF02875 Mur ligase family, glutamate ligase domain AEQU_1421 PF01225 Mur ligase family, catalytic domain AEQU_1422 PF04101 Glycosyltransferase family 28 C-terminal domain AEQU_1422 PF03033 Glycosyltransferase family 28 N-terminal domain AEQU_1423 PF01098 Cell cycle protein AEQU_1424 PF08245 Mur ligase middle domain AEQU_1424 PF02875 Mur ligase family, glutamate ligase domain AEQU_1424 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AEQU_1425 PF00953 Glycosyl transferase family 4 AEQU_1426 PF02875 Mur ligase family, glutamate ligase domain AEQU_1426 PF01225 Mur ligase family, catalytic domain AEQU_1426 PF08245 Mur ligase middle domain AEQU_1427 PF01225 Mur ligase family, catalytic domain AEQU_1427 PF08245 Mur ligase middle domain AEQU_1427 PF02875 Mur ligase family, glutamate ligase domain AEQU_1428 PF03717 Penicillin-binding Protein dimerisation domain AEQU_1428 PF00905 Penicillin binding protein transpeptidase domain AEQU_1430 PF01795 MraW methylase family AEQU_1431 PF02381 MraZ protein, putative antitoxin-like AEQU_1432 PF02899 Phage integrase, N-terminal SAM-like domain AEQU_1432 PF00589 Phage integrase family AEQU_1433 PF17763 Glutaminase/Asparaginase C-terminal domain AEQU_1433 PF00710 Asparaginase, N-terminal AEQU_1434 PF03458 UPF0126 domain AEQU_1435 PF08903 Domain of unknown function (DUF1846) AEQU_1437 PF00890 FAD binding domain AEQU_1437 PF03358 NADPH-dependent FMN reductase AEQU_1437 PF04205 FMN-binding domain AEQU_1439 PF00117 Glutamine amidotransferase class-I AEQU_1439 PF06418 CTP synthase N-terminus AEQU_1440 PF00557 Metallopeptidase family M24 AEQU_1441 PF01513 ATP-NAD kinase AEQU_1442 PF03023 Lipid II flippase MurJ AEQU_1443 PF00687 Ribosomal protein L1p/L10e family AEQU_1444 PF03946 Ribosomal protein L11, N-terminal domain AEQU_1444 PF00298 Ribosomal protein L11, RNA binding domain AEQU_1445 PF02357 Transcription termination factor nusG AEQU_1445 PF00467 KOW motif AEQU_1446 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AEQU_1447 PF00471 Ribosomal protein L33 AEQU_1448 PF03143 Elongation factor Tu C-terminal domain AEQU_1448 PF00009 Elongation factor Tu GTP binding domain AEQU_1448 PF03144 Elongation factor Tu domain 2 AEQU_1449 PF08239 Bacterial SH3 domain AEQU_1449 PF01476 LysM domain AEQU_1449 PF00877 NlpC/P60 family AEQU_1450 PF00258 Flavodoxin AEQU_1450 PF00753 Metallo-beta-lactamase superfamily AEQU_1451 PF00474 Sodium:solute symporter family AEQU_1452 PF12897 Alanine-glyoxylate amino-transferase AEQU_1454 PF01177 Asp/Glu/Hydantoin racemase AEQU_1455 PF00733 Asparagine synthase AEQU_1455 PF13537 Glutamine amidotransferase domain AEQU_1456 PF01794 Ferric reductase like transmembrane component AEQU_1456 PF04205 FMN-binding domain AEQU_1459 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AEQU_1459 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AEQU_1459 PF10371 Domain of unknown function AEQU_1459 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AEQU_1459 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AEQU_1460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AEQU_1462 PF05191 Adenylate kinase, active site lid AEQU_1463 PF00344 SecY translocase AEQU_1464 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AEQU_1465 PF00327 Ribosomal protein L30p/L7e AEQU_1466 PF03719 Ribosomal protein S5, C-terminal domain AEQU_1466 PF00333 Ribosomal protein S5, N-terminal domain AEQU_1467 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AEQU_1468 PF00347 Ribosomal protein L6 AEQU_1469 PF00410 Ribosomal protein S8 AEQU_1470 PF00253 Ribosomal protein S14p/S29e AEQU_1471 PF00673 ribosomal L5P family C-terminus AEQU_1471 PF00281 Ribosomal protein L5 AEQU_1472 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AEQU_1472 PF00467 KOW motif AEQU_1474 PF00366 Ribosomal protein S17 AEQU_1475 PF00831 Ribosomal L29 protein AEQU_1476 PF00252 Ribosomal protein L16p/L10e AEQU_1477 PF00189 Ribosomal protein S3, C-terminal domain AEQU_1477 PF07650 KH domain AEQU_1478 PF00237 Ribosomal protein L22p/L17e AEQU_1479 PF00203 Ribosomal protein S19 AEQU_1480 PF00181 Ribosomal Proteins L2, RNA binding domain AEQU_1480 PF03947 Ribosomal Proteins L2, C-terminal domain AEQU_1484 PF11842 Domain of unknown function (DUF3362) AEQU_1484 PF08497 Radical SAM N-terminal AEQU_1484 PF04055 Radical SAM superfamily AEQU_1485 PF05698 Bacterial trigger factor protein (TF) C-terminus AEQU_1485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AEQU_1485 PF05697 Bacterial trigger factor protein (TF) AEQU_1487 PF00005 ABC transporter AEQU_1492 PF00072 Response regulator receiver domain AEQU_1492 PF00196 Bacterial regulatory proteins, luxR family AEQU_1495 PF00276 Ribosomal protein L23 AEQU_1496 PF00573 Ribosomal protein L4/L1 family AEQU_1497 PF00297 Ribosomal protein L3 AEQU_1498 PF00338 Ribosomal protein S10p/S20e AEQU_1499 PF03144 Elongation factor Tu domain 2 AEQU_1499 PF00009 Elongation factor Tu GTP binding domain AEQU_1499 PF14492 Elongation Factor G, domain II AEQU_1499 PF00679 Elongation factor G C-terminus AEQU_1499 PF03764 Elongation factor G, domain IV AEQU_1500 PF00177 Ribosomal protein S7p/S5e AEQU_1501 PF00164 Ribosomal protein S12/S23 AEQU_1502 PF00196 Bacterial regulatory proteins, luxR family AEQU_1504 PF04205 FMN-binding domain AEQU_1504 PF00890 FAD binding domain AEQU_1507 PF07687 Peptidase dimerisation domain AEQU_1507 PF01546 Peptidase family M20/M25/M40 AEQU_1508 PF01368 DHH family AEQU_1508 PF02833 DHHA2 domain AEQU_1509 PF03313 Serine dehydratase alpha chain AEQU_1510 PF00580 UvrD/REP helicase N-terminal domain AEQU_1510 PF13361 UvrD-like helicase C-terminal domain AEQU_1511 PF00497 Bacterial extracellular solute-binding proteins, family 3 AEQU_1515 PF01479 S4 domain AEQU_1515 PF01728 FtsJ-like methyltransferase AEQU_1517 PF01118 Semialdehyde dehydrogenase, NAD binding domain AEQU_1517 PF02774 Semialdehyde dehydrogenase, dimerisation domain AEQU_1518 PF13840 ACT domain AEQU_1518 PF00696 Amino acid kinase family AEQU_1518 PF01842 ACT domain AEQU_1520 PF03458 UPF0126 domain AEQU_1522 PF01384 Phosphate transporter family AEQU_1523 PF00753 Metallo-beta-lactamase superfamily AEQU_1524 PF02824 TGS domain AEQU_1524 PF04607 Region found in RelA / SpoT proteins AEQU_1524 PF13291 ACT domain AEQU_1525 PF02272 DHHA1 domain AEQU_1525 PF01368 DHH family AEQU_1525 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AEQU_1525 PF17768 RecJ OB domain AEQU_1526 PF14489 QueF-like protein AEQU_1527 PF06508 Queuosine biosynthesis protein QueC AEQU_1528 PF04055 Radical SAM superfamily AEQU_1529 PF01242 6-pyruvoyl tetrahydropterin synthase AEQU_1531 PF01205 Uncharacterized protein family UPF0029 AEQU_1531 PF09186 Domain of unknown function (DUF1949) AEQU_1532 PF12848 ABC transporter AEQU_1532 PF16326 ABC transporter C-terminal domain AEQU_1532 PF00005 ABC transporter AEQU_1533 PF07690 Major Facilitator Superfamily AEQU_1534 PF01195 Peptidyl-tRNA hydrolase AEQU_1535 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AEQU_1535 PF14572 Phosphoribosyl synthetase-associated domain AEQU_1536 PF12804 MobA-like NTP transferase domain AEQU_1536 PF00132 Bacterial transferase hexapeptide (six repeats) AEQU_1538 PF00403 Heavy-metal-associated domain AEQU_1539 PF02583 Metal-sensitive transcriptional repressor AEQU_1540 PF00550 Phosphopantetheine attachment site AEQU_1541 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AEQU_1541 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AEQU_1543 PF06965 Na+/H+ antiporter 1 AEQU_1544 PF02875 Mur ligase family, glutamate ligase domain AEQU_1544 PF08245 Mur ligase middle domain AEQU_1545 PF01544 CorA-like Mg2+ transporter protein AEQU_1546 PF03167 Uracil DNA glycosylase superfamily AEQU_1547 PF00842 Alanine racemase, C-terminal domain AEQU_1547 PF01168 Alanine racemase, N-terminal domain AEQU_1548 PF00994 Probable molybdopterin binding domain AEQU_1549 PF03453 MoeA N-terminal region (domain I and II) AEQU_1549 PF03454 MoeA C-terminal region (domain IV) AEQU_1549 PF00994 Probable molybdopterin binding domain AEQU_1550 PF00664 ABC transporter transmembrane region AEQU_1550 PF00005 ABC transporter AEQU_1552 PF00890 FAD binding domain AEQU_1552 PF04205 FMN-binding domain AEQU_1554 PF03952 Enolase, N-terminal domain AEQU_1554 PF00113 Enolase, C-terminal TIM barrel domain AEQU_1555 PF06100 MCRA family AEQU_1557 PF02361 Cobalt transport protein AEQU_1560 PF01196 Ribosomal protein L17 AEQU_1561 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AEQU_1561 PF01000 RNA polymerase Rpb3/RpoA insert domain AEQU_1561 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AEQU_1562 PF00163 Ribosomal protein S4/S9 N-terminal domain AEQU_1562 PF01479 S4 domain AEQU_1563 PF00411 Ribosomal protein S11 AEQU_1564 PF00416 Ribosomal protein S13/S18 AEQU_1565 PF00444 Ribosomal protein L36 AEQU_1566 PF01176 Translation initiation factor 1A / IF-1 AEQU_1567 PF08443 RimK-like ATP-grasp domain AEQU_1567 PF04262 Glutamate-cysteine ligase AEQU_1567 PF18419 ATP-grasp-like domain AEQU_1569 PF00196 Bacterial regulatory proteins, luxR family AEQU_1572 PF07690 Major Facilitator Superfamily AEQU_1575 PF02554 Carbon starvation protein CstA AEQU_1575 PF13722 5TM C-terminal transporter carbon starvation CstA AEQU_1578 PF00860 Permease family AEQU_1579 PF00156 Phosphoribosyl transferase domain AEQU_1580 PF00118 TCP-1/cpn60 chaperonin family AEQU_1581 PF00166 Chaperonin 10 Kd subunit AEQU_1582 PF00072 Response regulator receiver domain AEQU_1582 PF00196 Bacterial regulatory proteins, luxR family AEQU_1583 PF07730 Histidine kinase AEQU_1583 PF05384 Sensor protein DegS AEQU_1583 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1584 PF02540 NAD synthase AEQU_1584 PF00795 Carbon-nitrogen hydrolase AEQU_1586 PF00902 Sec-independent protein translocase protein (TatC) AEQU_1587 PF02416 mttA/Hcf106 family AEQU_1589 PF01979 Amidohydrolase family AEQU_1593 PF04073 Aminoacyl-tRNA editing domain AEQU_1597 PF00037 4Fe-4S binding domain AEQU_1597 PF13247 4Fe-4S dicluster domain AEQU_1599 PF01568 Molydopterin dinucleotide binding domain AEQU_1599 PF00384 Molybdopterin oxidoreductase AEQU_1600 PF01145 SPFH domain / Band 7 family AEQU_1603 PF00486 Transcriptional regulatory protein, C terminal AEQU_1603 PF00072 Response regulator receiver domain AEQU_1604 PF02702 Osmosensitive K+ channel His kinase sensor domain AEQU_1604 PF00512 His Kinase A (phospho-acceptor) domain AEQU_1604 PF13493 Domain of unknown function (DUF4118) AEQU_1604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1605 PF02669 K+-transporting ATPase, c chain AEQU_1607 PF03814 Potassium-transporting ATPase A subunit AEQU_1609 PF00814 Glycoprotease family AEQU_1610 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AEQU_1611 PF01226 Formate/nitrite transporter AEQU_1612 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AEQU_1612 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AEQU_1613 PF04961 Formiminotransferase-cyclodeaminase AEQU_1615 PF03309 Type III pantothenate kinase AEQU_1616 PF00486 Transcriptional regulatory protein, C terminal AEQU_1616 PF00072 Response regulator receiver domain AEQU_1617 PF02632 BioY family AEQU_1618 PF01554 MatE AEQU_1619 PF12800 4Fe-4S binding domain AEQU_1619 PF13247 4Fe-4S dicluster domain AEQU_1620 PF01568 Molydopterin dinucleotide binding domain AEQU_1620 PF10518 TAT (twin-arginine translocation) pathway signal sequence AEQU_1620 PF00384 Molybdopterin oxidoreductase AEQU_1620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1623 PF00890 FAD binding domain AEQU_1627 PF00809 Pterin binding enzyme AEQU_1628 PF00004 ATPase family associated with various cellular activities (AAA) AEQU_1628 PF17862 AAA+ lid domain AEQU_1628 PF01434 Peptidase family M41 AEQU_1628 PF06480 FtsH Extracellular AEQU_1630 PF02545 Maf-like protein AEQU_1631 PF11734 TilS substrate C-terminal domain AEQU_1631 PF01171 PP-loop family AEQU_1632 PF05958 tRNA (Uracil-5-)-methyltransferase AEQU_1632 PF01938 TRAM domain AEQU_1633 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AEQU_1634 PF00005 ABC transporter AEQU_1634 PF02687 FtsX-like permease family AEQU_1634 PF12704 MacB-like periplasmic core domain AEQU_1635 PF00210 Ferritin-like domain AEQU_1636 PF02677 Epoxyqueuosine reductase QueH AEQU_1637 PF03006 Haemolysin-III related AEQU_1638 PF01261 Xylose isomerase-like TIM barrel AEQU_1640 PF00248 Aldo/keto reductase family AEQU_1641 PF00085 Thioredoxin AEQU_1642 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AEQU_1642 PF01871 AMMECR1 AEQU_1643 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AEQU_1643 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AEQU_1644 PF00288 GHMP kinases N terminal domain AEQU_1644 PF10509 Galactokinase galactose-binding signature AEQU_1644 PF08544 GHMP kinases C terminal AEQU_1645 PF00703 Glycosyl hydrolases family 2 AEQU_1645 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AEQU_1645 PF16355 Domain of unknown function (DUF4982) AEQU_1645 PF02837 Glycosyl hydrolases family 2, sugar binding domain AEQU_1645 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AEQU_1648 PF00196 Bacterial regulatory proteins, luxR family AEQU_1649 PF00890 FAD binding domain AEQU_1649 PF00890 FAD binding domain AEQU_1655 PF12800 4Fe-4S binding domain AEQU_1655 PF13247 4Fe-4S dicluster domain AEQU_1656 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1656 PF00384 Molybdopterin oxidoreductase AEQU_1656 PF01568 Molydopterin dinucleotide binding domain AEQU_1658 PF00248 Aldo/keto reductase family AEQU_1659 PF13382 Adenine deaminase C-terminal domain AEQU_1659 PF01979 Amidohydrolase family AEQU_1660 PF02580 D-Tyr-tRNA(Tyr) deacylase AEQU_1661 PF07722 Peptidase C26 AEQU_1664 PF08148 DSHCT (NUC185) domain AEQU_1664 PF00270 DEAD/DEAH box helicase AEQU_1664 PF00271 Helicase conserved C-terminal domain AEQU_1665 PF00890 FAD binding domain AEQU_1665 PF14537 Cytochrome c3 AEQU_1667 PF13173 AAA domain AEQU_1667 PF13635 Domain of unknown function (DUF4143) AEQU_1669 PF02811 PHP domain AEQU_1670 PF00005 ABC transporter AEQU_1671 PF07969 Amidohydrolase family AEQU_1672 PF00005 ABC transporter AEQU_1673 PF06007 Phosphonate metabolism protein PhnJ AEQU_1674 PF05861 Bacterial phosphonate metabolism protein (PhnI) AEQU_1677 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_1678 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_1679 PF00005 ABC transporter AEQU_1682 PF01235 Sodium:alanine symporter family AEQU_1683 PF12419 SNF2 Helicase protein AEQU_1683 PF00271 Helicase conserved C-terminal domain AEQU_1683 PF00176 SNF2 family N-terminal domain AEQU_1685 PF00873 AcrB/AcrD/AcrF family AEQU_1685 PF00873 AcrB/AcrD/AcrF family AEQU_1688 PF00005 ABC transporter AEQU_1688 PF00664 ABC transporter transmembrane region AEQU_1689 PF13538 UvrD-like helicase C-terminal domain AEQU_1690 PF01327 Polypeptide deformylase AEQU_1692 PF00753 Metallo-beta-lactamase superfamily AEQU_1693 PF01042 Endoribonuclease L-PSP AEQU_1694 PF00512 His Kinase A (phospho-acceptor) domain AEQU_1694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1694 PF00072 Response regulator receiver domain AEQU_1694 PF09308 LuxQ, periplasmic AEQU_1696 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AEQU_1699 PF02492 CobW/HypB/UreG, nucleotide-binding domain AEQU_1700 PF01569 PAP2 superfamily AEQU_1702 PF01256 Carbohydrate kinase AEQU_1702 PF03853 YjeF-related protein N-terminus AEQU_1704 PF00392 Bacterial regulatory proteins, gntR family AEQU_1706 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AEQU_1711 PF07804 HipA-like C-terminal domain AEQU_1715 PF00890 FAD binding domain AEQU_1715 PF04205 FMN-binding domain AEQU_1716 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AEQU_1716 PF07992 Pyridine nucleotide-disulphide oxidoreductase AEQU_1717 PF02535 ZIP Zinc transporter AEQU_1719 PF01966 HD domain AEQU_1719 PF13286 Phosphohydrolase-associated domain AEQU_1721 PF06874 Firmicute fructose-1,6-bisphosphatase AEQU_1723 PF00156 Phosphoribosyl transferase domain AEQU_1726 PF00155 Aminotransferase class I and II AEQU_1727 PF00696 Amino acid kinase family AEQU_1730 PF13673 Acetyltransferase (GNAT) domain AEQU_1733 PF00916 Sulfate permease family AEQU_1733 PF01740 STAS domain AEQU_1734 PF14537 Cytochrome c3 AEQU_1734 PF00890 FAD binding domain AEQU_1735 PF00196 Bacterial regulatory proteins, luxR family AEQU_1738 PF02080 TrkA-C domain AEQU_1738 PF02254 TrkA-N domain AEQU_1739 PF02386 Cation transport protein AEQU_1742 PF04304 Protein of unknown function (DUF454) AEQU_1743 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AEQU_1744 PF01740 STAS domain AEQU_1744 PF00916 Sulfate permease family AEQU_1757 PF11867 Domain of unknown function (DUF3387) AEQU_1757 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AEQU_1757 PF18766 SWI2/SNF2 ATPase AEQU_1758 PF01420 Type I restriction modification DNA specificity domain AEQU_1759 PF12161 HsdM N-terminal domain AEQU_1759 PF02384 N-6 DNA Methylase AEQU_1762 PF00872 Transposase, Mutator family AEQU_1765 PF00440 Bacterial regulatory proteins, tetR family AEQU_1767 PF01625 Peptide methionine sulfoxide reductase AEQU_1767 PF01641 SelR domain AEQU_1768 PF02661 Fic/DOC family AEQU_1768 PF12728 Helix-turn-helix domain AEQU_1769 PF02540 NAD synthase AEQU_1769 PF00958 GMP synthase C terminal domain AEQU_1769 PF00117 Glutamine amidotransferase class-I AEQU_1772 PF01022 Bacterial regulatory protein, arsR family AEQU_1773 PF00403 Heavy-metal-associated domain AEQU_1774 PF00403 Heavy-metal-associated domain AEQU_1777 PF16320 Ribosomal protein L7/L12 dimerisation domain AEQU_1777 PF00542 Ribosomal protein L7/L12 C-terminal domain AEQU_1778 PF00466 Ribosomal protein L10 AEQU_1779 PF00072 Response regulator receiver domain AEQU_1779 PF00196 Bacterial regulatory proteins, luxR family AEQU_1780 PF14537 Cytochrome c3 AEQU_1780 PF00890 FAD binding domain AEQU_1782 PF01850 PIN domain AEQU_1784 PF03129 Anticodon binding domain AEQU_1784 PF13393 Histidyl-tRNA synthetase AEQU_1785 PF00180 Isocitrate/isopropylmalate dehydrogenase AEQU_1786 PF00694 Aconitase C-terminal domain AEQU_1789 PF00348 Polyprenyl synthetase AEQU_1792 PF01794 Ferric reductase like transmembrane component AEQU_1792 PF04205 FMN-binding domain AEQU_1794 PF13247 4Fe-4S dicluster domain AEQU_1795 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1795 PF01568 Molydopterin dinucleotide binding domain AEQU_1795 PF00384 Molybdopterin oxidoreductase AEQU_1797 PF00486 Transcriptional regulatory protein, C terminal AEQU_1797 PF00072 Response regulator receiver domain AEQU_1798 PF00512 His Kinase A (phospho-acceptor) domain AEQU_1798 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1800 PF02541 Ppx/GppA phosphatase family AEQU_1804 PF04023 FeoA domain AEQU_1804 PF07664 Ferrous iron transport protein B C terminus AEQU_1804 PF17910 FeoB cytosolic helical domain AEQU_1804 PF02421 Ferrous iron transport protein B AEQU_1804 PF07670 Nucleoside recognition AEQU_1807 PF00291 Pyridoxal-phosphate dependent enzyme AEQU_1807 PF14821 Threonine synthase N terminus AEQU_1818 PF00437 Type II/IV secretion system protein AEQU_1823 PF00005 ABC transporter AEQU_1824 PF07730 Histidine kinase AEQU_1825 PF00072 Response regulator receiver domain AEQU_1825 PF00196 Bacterial regulatory proteins, luxR family AEQU_1826 PF02311 AraC-like ligand binding domain AEQU_1826 PF12833 Helix-turn-helix domain AEQU_1827 PF00892 EamA-like transporter family AEQU_1830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_1830 PF03466 LysR substrate binding domain AEQU_1831 PF02661 Fic/DOC family AEQU_1831 PF13784 Fic/DOC family N-terminal AEQU_1834 PF13247 4Fe-4S dicluster domain AEQU_1834 PF12800 4Fe-4S binding domain AEQU_1835 PF01568 Molydopterin dinucleotide binding domain AEQU_1835 PF00384 Molybdopterin oxidoreductase AEQU_1835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1836 PF00196 Bacterial regulatory proteins, luxR family AEQU_1837 PF00196 Bacterial regulatory proteins, luxR family AEQU_1837 PF00072 Response regulator receiver domain AEQU_1838 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AEQU_1838 PF07992 Pyridine nucleotide-disulphide oxidoreductase AEQU_1840 PF02613 Nitrate reductase delta subunit AEQU_1842 PF12837 4Fe-4S binding domain AEQU_1842 PF12801 4Fe-4S binding domain AEQU_1845 PF12800 4Fe-4S binding domain AEQU_1845 PF13247 4Fe-4S dicluster domain AEQU_1846 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1846 PF00384 Molybdopterin oxidoreductase AEQU_1846 PF01568 Molydopterin dinucleotide binding domain AEQU_1853 PF00005 ABC transporter AEQU_1858 PF00005 ABC transporter AEQU_1859 PF11808 Phosphate regulon sensor protein PhoR AEQU_1859 PF00989 PAS fold AEQU_1859 PF00512 His Kinase A (phospho-acceptor) domain AEQU_1859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1860 PF00072 Response regulator receiver domain AEQU_1860 PF00486 Transcriptional regulatory protein, C terminal AEQU_1861 PF04127 DNA / pantothenate metabolism flavoprotein AEQU_1861 PF02441 Flavoprotein AEQU_1862 PF01842 ACT domain AEQU_1862 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AEQU_1862 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AEQU_1863 PF00440 Bacterial regulatory proteins, tetR family AEQU_1863 PF13977 BetI-type transcriptional repressor, C-terminal AEQU_1867 PF00072 Response regulator receiver domain AEQU_1867 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1867 PF00512 His Kinase A (phospho-acceptor) domain AEQU_1867 PF09308 LuxQ, periplasmic AEQU_1868 PF13603 Leucyl-tRNA synthetase, Domain 2 AEQU_1868 PF00133 tRNA synthetases class I (I, L, M and V) AEQU_1868 PF09334 tRNA synthetases class I (M) AEQU_1868 PF08264 Anticodon-binding domain of tRNA AEQU_1870 PF01926 50S ribosome-binding GTPase AEQU_1872 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_1872 PF03466 LysR substrate binding domain AEQU_1873 PF00571 CBS domain AEQU_1873 PF00478 IMP dehydrogenase / GMP reductase domain AEQU_1877 PF02915 Rubrerythrin AEQU_1878 PF02127 Aminopeptidase I zinc metalloprotease (M18) AEQU_1879 PF04371 Porphyromonas-type peptidyl-arginine deiminase AEQU_1880 PF13520 Amino acid permease AEQU_1881 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AEQU_1881 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AEQU_1885 PF01063 Amino-transferase class IV AEQU_1886 PF07690 Major Facilitator Superfamily AEQU_1890 PF00072 Response regulator receiver domain AEQU_1890 PF00486 Transcriptional regulatory protein, C terminal AEQU_1891 PF00672 HAMP domain AEQU_1891 PF00512 His Kinase A (phospho-acceptor) domain AEQU_1891 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1893 PF00890 FAD binding domain AEQU_1893 PF04205 FMN-binding domain AEQU_1900 PF13247 4Fe-4S dicluster domain AEQU_1900 PF12800 4Fe-4S binding domain AEQU_1901 PF00384 Molybdopterin oxidoreductase AEQU_1901 PF01568 Molydopterin dinucleotide binding domain AEQU_1904 PF02613 Nitrate reductase delta subunit AEQU_1908 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_1908 PF03466 LysR substrate binding domain AEQU_1909 PF00890 FAD binding domain AEQU_1909 PF14537 Cytochrome c3 AEQU_1913 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1913 PF00512 His Kinase A (phospho-acceptor) domain AEQU_1915 PF00005 ABC transporter AEQU_1916 PF00072 Response regulator receiver domain AEQU_1916 PF00486 Transcriptional regulatory protein, C terminal AEQU_1918 PF00196 Bacterial regulatory proteins, luxR family AEQU_1918 PF00072 Response regulator receiver domain AEQU_1920 PF18318 Glutamine synthetase C-terminal domain AEQU_1920 PF00120 Glutamine synthetase, catalytic domain AEQU_1920 PF12437 Glutamine synthetase type III N terminal AEQU_1921 PF03358 NADPH-dependent FMN reductase AEQU_1921 PF04205 FMN-binding domain AEQU_1921 PF00890 FAD binding domain AEQU_1922 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_1922 PF03466 LysR substrate binding domain AEQU_1925 PF07690 Major Facilitator Superfamily AEQU_1926 PF00596 Class II Aldolase and Adducin N-terminal domain AEQU_1927 PF06134 L-rhamnose isomerase (RhaA) AEQU_1927 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AEQU_1927 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AEQU_1928 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AEQU_1928 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AEQU_1933 PF00380 Ribosomal protein S9/S16 AEQU_1934 PF00572 Ribosomal protein L13 AEQU_1936 PF02535 ZIP Zinc transporter AEQU_1941 PF00578 AhpC/TSA family AEQU_1944 PF00310 Glutamine amidotransferases class-II AEQU_1945 PF13187 4Fe-4S dicluster domain AEQU_1945 PF01645 Conserved region in glutamate synthase AEQU_1947 PF00890 FAD binding domain AEQU_1947 PF14537 Cytochrome c3 AEQU_1948 PF00196 Bacterial regulatory proteins, luxR family AEQU_1951 PF01053 Cys/Met metabolism PLP-dependent enzyme AEQU_1953 PF17874 MalT-like TPR region AEQU_1953 PF00196 Bacterial regulatory proteins, luxR family AEQU_1954 PF00890 FAD binding domain AEQU_1954 PF14537 Cytochrome c3 AEQU_1955 PF01053 Cys/Met metabolism PLP-dependent enzyme AEQU_1957 PF13247 4Fe-4S dicluster domain AEQU_1957 PF12800 4Fe-4S binding domain AEQU_1958 PF01568 Molydopterin dinucleotide binding domain AEQU_1958 PF00384 Molybdopterin oxidoreductase AEQU_1959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_1959 PF03466 LysR substrate binding domain AEQU_1963 PF00196 Bacterial regulatory proteins, luxR family AEQU_1963 PF17874 MalT-like TPR region AEQU_1972 PF01381 Helix-turn-helix AEQU_1974 PF13419 Haloacid dehalogenase-like hydrolase AEQU_1975 PF01842 ACT domain AEQU_1975 PF00742 Homoserine dehydrogenase AEQU_1975 PF03447 Homoserine dehydrogenase, NAD binding domain AEQU_1977 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AEQU_1977 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AEQU_1981 PF00209 Sodium:neurotransmitter symporter family AEQU_1984 PF09335 SNARE associated Golgi protein AEQU_1987 PF07478 D-ala D-ala ligase C-terminus AEQU_1987 PF01820 D-ala D-ala ligase N-terminus AEQU_1988 PF00155 Aminotransferase class I and II AEQU_1991 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AEQU_1991 PF02403 Seryl-tRNA synthetase N-terminal domain AEQU_1993 PF03793 PASTA domain AEQU_1993 PF00069 Protein kinase domain AEQU_1994 PF01261 Xylose isomerase-like TIM barrel AEQU_1997 PF07694 5TMR of 5TMR-LYT AEQU_1997 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_1997 PF06580 Histidine kinase AEQU_1998 PF01925 Sulfite exporter TauE/SafE AEQU_2000 PF03193 RsgA GTPase AEQU_2002 PF02386 Cation transport protein AEQU_2003 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AEQU_2003 PF01565 FAD binding domain AEQU_2004 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AEQU_2004 PF02769 AIR synthase related protein, C-terminal domain AEQU_2004 PF00586 AIR synthase related protein, N-terminal domain AEQU_2006 PF01259 SAICAR synthetase AEQU_2007 PF00512 His Kinase A (phospho-acceptor) domain AEQU_2007 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_2007 PF00989 PAS fold AEQU_2007 PF16736 Single Cache-like AEQU_2008 PF00072 Response regulator receiver domain AEQU_2008 PF00486 Transcriptional regulatory protein, C terminal AEQU_2010 PF00933 Glycosyl hydrolase family 3 N terminal domain AEQU_2010 PF01915 Glycosyl hydrolase family 3 C-terminal domain AEQU_2011 PF02683 Cytochrome C biogenesis protein transmembrane region AEQU_2012 PF00578 AhpC/TSA family AEQU_2013 PF14537 Cytochrome c3 AEQU_2013 PF00890 FAD binding domain AEQU_2016 PF00206 Lyase AEQU_2016 PF10397 Adenylosuccinate lyase C-terminus AEQU_2018 PF00288 GHMP kinases N terminal domain AEQU_2018 PF08544 GHMP kinases C terminal AEQU_2019 PF14437 MafB19-like deaminase AEQU_2020 PF00285 Citrate synthase, C-terminal domain AEQU_2021 PF00571 CBS domain AEQU_2021 PF01769 Divalent cation transporter AEQU_2021 PF03448 MgtE intracellular N domain AEQU_2023 PF02082 Transcriptional regulator AEQU_2024 PF03553 Na+/H+ antiporter family AEQU_2025 PF00474 Sodium:solute symporter family AEQU_2028 PF16582 Middle domain of thiamine pyrophosphate AEQU_2028 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AEQU_2028 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AEQU_2029 PF00425 chorismate binding enzyme AEQU_2031 PF01227 GTP cyclohydrolase I AEQU_2032 PF01741 Large-conductance mechanosensitive channel, MscL AEQU_2033 PF07690 Major Facilitator Superfamily AEQU_2034 PF13545 Crp-like helix-turn-helix domain AEQU_2034 PF00027 Cyclic nucleotide-binding domain AEQU_2035 PF13247 4Fe-4S dicluster domain AEQU_2035 PF12800 4Fe-4S binding domain AEQU_2036 PF00384 Molybdopterin oxidoreductase AEQU_2036 PF01568 Molydopterin dinucleotide binding domain AEQU_2037 PF02590 Predicted SPOUT methyltransferase AEQU_2038 PF03372 Endonuclease/Exonuclease/phosphatase family AEQU_2040 PF03816 Cell envelope-related transcriptional attenuator domain AEQU_2041 PF08353 Domain of unknown function (DUF1727) AEQU_2041 PF08245 Mur ligase middle domain AEQU_2042 PF17760 UvrA interaction domain AEQU_2042 PF00005 ABC transporter AEQU_2042 PF17755 UvrA DNA-binding domain AEQU_2046 PF13247 4Fe-4S dicluster domain AEQU_2046 PF00037 4Fe-4S binding domain AEQU_2047 PF00384 Molybdopterin oxidoreductase AEQU_2047 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_2047 PF01568 Molydopterin dinucleotide binding domain AEQU_2048 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_2048 PF03466 LysR substrate binding domain AEQU_2049 PF00890 FAD binding domain AEQU_2049 PF14537 Cytochrome c3 AEQU_2051 PF02661 Fic/DOC family AEQU_2051 PF12728 Helix-turn-helix domain AEQU_2053 PF02525 Flavodoxin-like fold AEQU_2054 PF04343 Protein of unknown function, DUF488 AEQU_2055 PF00860 Permease family AEQU_2056 PF00155 Aminotransferase class I and II AEQU_2057 PF13520 Amino acid permease AEQU_2058 PF00072 Response regulator receiver domain AEQU_2058 PF00196 Bacterial regulatory proteins, luxR family AEQU_2060 PF03641 Possible lysine decarboxylase AEQU_2061 PF17158 Membrane-associated sensor, integral membrane domain AEQU_2061 PF00990 Diguanylate cyclase, GGDEF domain AEQU_2063 PF00085 Thioredoxin AEQU_2065 PF07690 Major Facilitator Superfamily AEQU_2066 PF00999 Sodium/hydrogen exchanger family AEQU_2067 PF00958 GMP synthase C terminal domain AEQU_2067 PF02540 NAD synthase AEQU_2070 PF01738 Dienelactone hydrolase family AEQU_2071 PF00753 Metallo-beta-lactamase superfamily AEQU_2071 PF16123 Hydroxyacylglutathione hydrolase C-terminus AEQU_2073 PF01381 Helix-turn-helix AEQU_2075 PF07859 alpha/beta hydrolase fold AEQU_2078 PF01381 Helix-turn-helix AEQU_2079 PF06445 GyrI-like small molecule binding domain AEQU_2079 PF12833 Helix-turn-helix domain AEQU_2080 PF13673 Acetyltransferase (GNAT) domain AEQU_2081 PF07690 Major Facilitator Superfamily AEQU_2082 PF13419 Haloacid dehalogenase-like hydrolase AEQU_2084 PF12728 Helix-turn-helix domain AEQU_2084 PF00145 C-5 cytosine-specific DNA methylase AEQU_2085 PF04960 Glutaminase AEQU_2086 PF02146 Sir2 family AEQU_2088 PF04471 Restriction endonuclease AEQU_2088 PF14338 Mrr N-terminal domain AEQU_2093 PF00440 Bacterial regulatory proteins, tetR family AEQU_2095 PF13411 MerR HTH family regulatory protein AEQU_2095 PF07739 TipAS antibiotic-recognition domain AEQU_2097 PF03960 ArsC family AEQU_2099 PF00174 Oxidoreductase molybdopterin binding domain AEQU_2103 PF00890 FAD binding domain AEQU_2103 PF03358 NADPH-dependent FMN reductase AEQU_2103 PF04205 FMN-binding domain AEQU_2106 PF04073 Aminoacyl-tRNA editing domain AEQU_2107 PF00301 Rubredoxin AEQU_2110 PF13520 Amino acid permease AEQU_2111 PF03051 Peptidase C1-like family AEQU_2115 PF00890 FAD binding domain AEQU_2115 PF14537 Cytochrome c3 AEQU_2116 PF00072 Response regulator receiver domain AEQU_2116 PF00196 Bacterial regulatory proteins, luxR family AEQU_2117 PF00890 FAD binding domain AEQU_2117 PF03358 NADPH-dependent FMN reductase AEQU_2117 PF04205 FMN-binding domain AEQU_2118 PF04205 FMN-binding domain AEQU_2118 PF03358 NADPH-dependent FMN reductase AEQU_2118 PF00890 FAD binding domain AEQU_2122 PF00005 ABC transporter AEQU_2125 PF00486 Transcriptional regulatory protein, C terminal AEQU_2125 PF00072 Response regulator receiver domain AEQU_2126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_2126 PF00512 His Kinase A (phospho-acceptor) domain AEQU_2126 PF16736 Single Cache-like AEQU_2126 PF00989 PAS fold AEQU_2129 PF01638 HxlR-like helix-turn-helix AEQU_2131 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB AEQU_2132 PF01381 Helix-turn-helix AEQU_2136 PF05872 Bacterial protein of unknown function (DUF853) AEQU_2137 PF03649 Uncharacterised protein family (UPF0014) AEQU_2138 PF00005 ABC transporter AEQU_2138 PF08402 TOBE domain AEQU_2148 PF00156 Phosphoribosyl transferase domain AEQU_2149 PF00501 AMP-binding enzyme AEQU_2149 PF13193 AMP-binding enzyme C-terminal domain AEQU_2150 PF00378 Enoyl-CoA hydratase/isomerase AEQU_2151 PF00437 Type II/IV secretion system protein AEQU_2158 PF00072 Response regulator receiver domain AEQU_2158 PF09308 LuxQ, periplasmic AEQU_2158 PF00512 His Kinase A (phospho-acceptor) domain AEQU_2158 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_2160 PF00072 Response regulator receiver domain AEQU_2161 PF14535 AMP-binding enzyme C-terminal domain AEQU_2161 PF00501 AMP-binding enzyme AEQU_2163 PF00072 Response regulator receiver domain AEQU_2163 PF00486 Transcriptional regulatory protein, C terminal AEQU_2164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_2164 PF00512 His Kinase A (phospho-acceptor) domain AEQU_2165 PF12800 4Fe-4S binding domain AEQU_2165 PF13247 4Fe-4S dicluster domain AEQU_2167 PF00384 Molybdopterin oxidoreductase AEQU_2167 PF01568 Molydopterin dinucleotide binding domain AEQU_2167 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_2173 PF00731 AIR carboxylase AEQU_2180 PF01047 MarR family AEQU_2181 PF00497 Bacterial extracellular solute-binding proteins, family 3 AEQU_2182 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_2183 PF00005 ABC transporter AEQU_2184 PF04012 PspA/IM30 family AEQU_2188 PF03109 ABC1 family AEQU_2192 PF01098 Cell cycle protein AEQU_2193 PF03793 PASTA domain AEQU_2193 PF00069 Protein kinase domain AEQU_2196 PF00989 PAS fold AEQU_2196 PF16736 Single Cache-like AEQU_2196 PF00512 His Kinase A (phospho-acceptor) domain AEQU_2196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_2197 PF00486 Transcriptional regulatory protein, C terminal AEQU_2197 PF00072 Response regulator receiver domain AEQU_2198 PF02690 Na+/Pi-cotransporter AEQU_2199 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_2200 PF00005 ABC transporter AEQU_2201 PF00528 Binding-protein-dependent transport system inner membrane component AEQU_2202 PF12849 PBP superfamily domain AEQU_2203 PF04205 FMN-binding domain AEQU_2203 PF01794 Ferric reductase like transmembrane component AEQU_2205 PF13247 4Fe-4S dicluster domain AEQU_2205 PF12800 4Fe-4S binding domain AEQU_2206 PF00384 Molybdopterin oxidoreductase AEQU_2206 PF01568 Molydopterin dinucleotide binding domain AEQU_2206 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_2207 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AEQU_2207 PF01568 Molydopterin dinucleotide binding domain AEQU_2207 PF00384 Molybdopterin oxidoreductase AEQU_2208 PF03466 LysR substrate binding domain AEQU_2208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AEQU_2212 PF03477 ATP cone domain AEQU_2212 PF13597 Anaerobic ribonucleoside-triphosphate reductase AEQU_2214 PF00005 ABC transporter AEQU_2220 PF01061 ABC-2 type transporter AEQU_2221 PF01926 50S ribosome-binding GTPase AEQU_2221 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AEQU_2223 PF06968 Biotin and Thiamin Synthesis associated domain AEQU_2223 PF04055 Radical SAM superfamily AEQU_2224 PF02906 Iron only hydrogenase large subunit, C-terminal domain AEQU_2224 PF00037 4Fe-4S binding domain AEQU_2224 PF02256 Iron hydrogenase small subunit AEQU_2224 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AEQU_2225 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AEQU_2225 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AEQU_2225 PF07992 Pyridine nucleotide-disulphide oxidoreductase AEQU_2227 PF01494 FAD binding domain AEQU_2228 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AEQU_2228 PF07992 Pyridine nucleotide-disulphide oxidoreductase AEQU_2231 PF00890 FAD binding domain AEQU_2231 PF03358 NADPH-dependent FMN reductase AEQU_2231 PF04205 FMN-binding domain AEQU_2232 PF00766 Electron transfer flavoprotein FAD-binding domain AEQU_2232 PF01012 Electron transfer flavoprotein domain AEQU_2235 PF00072 Response regulator receiver domain AEQU_2235 PF00196 Bacterial regulatory proteins, luxR family AEQU_2238 PF13784 Fic/DOC family N-terminal AEQU_2238 PF02661 Fic/DOC family AEQU_2241 PF00890 FAD binding domain AEQU_2241 PF14537 Cytochrome c3 AEQU_2242 PF00890 FAD binding domain AEQU_2242 PF04205 FMN-binding domain AEQU_2242 PF03358 NADPH-dependent FMN reductase AEQU_2243 PF00196 Bacterial regulatory proteins, luxR family AEQU_2245 PF00465 Iron-containing alcohol dehydrogenase AEQU_2248 PF01522 Polysaccharide deacetylase AEQU_2249 PF00132 Bacterial transferase hexapeptide (six repeats) AEQU_2250 PF07690 Major Facilitator Superfamily AEQU_2251 PF00571 CBS domain AEQU_2251 PF01595 Cyclin M transmembrane N-terminal domain AEQU_2251 PF03471 Transporter associated domain AEQU_2253 PF09312 SurA N-terminal domain AEQU_2253 PF00639 PPIC-type PPIASE domain AEQU_2255 PF01556 DnaJ C terminal domain AEQU_2255 PF00226 DnaJ domain AEQU_2255 PF00684 DnaJ central domain AEQU_2260 PF00872 Transposase, Mutator family AEQU_2269 PF00535 Glycosyl transferase family 2 AEQU_2277 PF00521 DNA gyrase/topoisomerase IV, subunit A AEQU_2277 PF03989 DNA gyrase C-terminal domain, beta-propeller AEQU_2278 PF00204 DNA gyrase B AEQU_2278 PF00986 DNA gyrase B subunit, carboxyl terminus AEQU_2278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_2278 PF01751 Toprim domain AEQU_2279 PF02463 RecF/RecN/SMC N terminal domain AEQU_2280 PF02767 DNA polymerase III beta subunit, central domain AEQU_2280 PF00712 DNA polymerase III beta subunit, N-terminal domain AEQU_2280 PF02768 DNA polymerase III beta subunit, C-terminal domain AEQU_2281 PF08448 PAS fold AEQU_2281 PF00512 His Kinase A (phospho-acceptor) domain AEQU_2281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AEQU_2281 PF13426 PAS domain AEQU_2281 PF00072 Response regulator receiver domain