AEQU_0001 SM00382 ATPases associated with a variety of cellular activities AEQU_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain AEQU_0006 SM00393 Putative single-stranded nucleic acids-binding domain AEQU_0009 SM00470 ParB-like nuclease domain AEQU_0012 SM00479 AEQU_0012 AEQU_0012 SM00491 AEQU_0012 AEQU_0019 SM00382 ATPases associated with a variety of cellular activities AEQU_0023 SM00788 Adenylosuccinate synthetase AEQU_0024 SM01209 AEQU_0024 AEQU_0024 SM01210 AEQU_0024 AEQU_0025 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_0029 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEQU_0029 SM00267 diguanylate cyclase AEQU_0036 SM00014 Acid phosphatase homologues AEQU_0037 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0044 SM00470 ParB-like nuclease domain AEQU_0048 SM00487 DEAD-like helicases superfamily AEQU_0068 SM00382 ATPases associated with a variety of cellular activities AEQU_0073 SM00823 Phosphopantetheine attachment site AEQU_0076 SM00382 ATPases associated with a variety of cellular activities AEQU_0077 SM00382 ATPases associated with a variety of cellular activities AEQU_0081 SM00996 S-adenosyl-L-homocysteine hydrolase AEQU_0081 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AEQU_0107 SM00271 DnaJ molecular chaperone homology domain AEQU_0108 SM00422 helix_turn_helix, mercury resistance AEQU_0109 SM00382 ATPases associated with a variety of cellular activities AEQU_0109 SM01086 C-terminal, D2-small domain, of ClpB protein AEQU_0114 SM00448 cheY-homologous receiver domain AEQU_0114 SM00850 LytTr DNA-binding domain AEQU_0125 SM00382 ATPases associated with a variety of cellular activities AEQU_0126 SM00387 Histidine kinase-like ATPases AEQU_0127 SM00448 cheY-homologous receiver domain AEQU_0127 SM00862 Transcriptional regulatory protein, C terminal AEQU_0132 SM00116 Domain in cystathionine beta-synthase and other proteins. AEQU_0132 SM01091 Transporter associated domain AEQU_0141 SM00062 Bacterial periplasmic substrate-binding proteins AEQU_0143 SM00382 ATPases associated with a variety of cellular activities AEQU_0144 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEQU_0145 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_0146 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0150 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0160 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0162 SM00967 RNA 2'-O ribose methyltransferase substrate binding AEQU_0164 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0166 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0167 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0169 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEQU_0170 SM00421 helix_turn_helix, Lux Regulon AEQU_0172 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0175 SM00382 ATPases associated with a variety of cellular activities AEQU_0178 SM00506 Appr-1"-p processing enzyme AEQU_0182 SM00448 cheY-homologous receiver domain AEQU_0182 SM00862 Transcriptional regulatory protein, C terminal AEQU_0183 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEQU_0183 SM00387 Histidine kinase-like ATPases AEQU_0183 SM00388 His Kinase A (phosphoacceptor) domain AEQU_0187 SM00382 ATPases associated with a variety of cellular activities AEQU_0191 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0192 SM00421 helix_turn_helix, Lux Regulon AEQU_0193 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0198 SM00421 helix_turn_helix, Lux Regulon AEQU_0205 SM01018 B12 binding domain AEQU_0211 SM00838 Elongation factor G C-terminus AEQU_0211 SM00889 Elongation factor G, domain IV AEQU_0213 SM00663 RNA polymerase I subunit A N-terminus AEQU_0220 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0232 SM00873 B3/4 domain AEQU_0235 SM00421 helix_turn_helix, Lux Regulon AEQU_0237 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0243 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0255 SM00798 AICARFT/IMPCHase bienzyme AEQU_0262 SM00421 helix_turn_helix, Lux Regulon AEQU_0263 SM00327 von Willebrand factor (vWF) type A domain AEQU_0269 SM00382 ATPases associated with a variety of cellular activities AEQU_0269 SM01086 C-terminal, D2-small domain, of ClpB protein AEQU_0272 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0275 SM00954 Region found in RelA / SpoT proteins AEQU_0276 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0278 SM00840 AEQU_0278 AEQU_0280 SM00421 helix_turn_helix, Lux Regulon AEQU_0285 SM00859 Semialdehyde dehydrogenase, NAD binding domain AEQU_0303 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0321 SM00382 ATPases associated with a variety of cellular activities AEQU_0323 SM00493 AEQU_0323 AEQU_0325 SM00421 helix_turn_helix, Lux Regulon AEQU_0331 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain AEQU_0341 SM00271 DnaJ molecular chaperone homology domain AEQU_0352 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0353 SM00421 helix_turn_helix, Lux Regulon AEQU_0354 SM00116 Domain in cystathionine beta-synthase and other proteins. AEQU_0356 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0362 SM00421 helix_turn_helix, Lux Regulon AEQU_0368 SM00387 Histidine kinase-like ATPases AEQU_0389 SM00421 helix_turn_helix, Lux Regulon AEQU_0393 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain AEQU_0395 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0403 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEQU_0410 SM00091 PAS domain AEQU_0410 SM00387 Histidine kinase-like ATPases AEQU_0410 SM00388 His Kinase A (phosphoacceptor) domain AEQU_0410 SM00448 cheY-homologous receiver domain AEQU_0415 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0418 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0419 SM00382 ATPases associated with a variety of cellular activities AEQU_0421 SM00226 Low molecular weight phosphatase family AEQU_0424 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_0439 SM00854 Bacterial capsule synthesis protein PGA_cap AEQU_0442 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AEQU_0443 SM00822 AEQU_0443 AEQU_0444 SM00825 Beta-ketoacyl synthase AEQU_0448 SM00387 Histidine kinase-like ATPases AEQU_0448 SM00388 His Kinase A (phosphoacceptor) domain AEQU_0449 SM00448 cheY-homologous receiver domain AEQU_0449 SM00862 Transcriptional regulatory protein, C terminal AEQU_0451 SM00382 ATPases associated with a variety of cellular activities AEQU_0455 SM00220 Serine/Threonine protein kinases, catalytic domain AEQU_0458 SM00421 helix_turn_helix, Lux Regulon AEQU_0461 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEQU_0462 SM00244 prohibitin homologues AEQU_0463 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0474 SM00830 Chorismate mutase type II AEQU_0479 SM00382 ATPases associated with a variety of cellular activities AEQU_0480 SM00382 ATPases associated with a variety of cellular activities AEQU_0486 SM00850 LytTr DNA-binding domain AEQU_0489 SM00422 helix_turn_helix, mercury resistance AEQU_0492 SM00487 DEAD-like helicases superfamily AEQU_0492 SM00490 helicase superfamily c-terminal domain AEQU_0493 SM00421 helix_turn_helix, Lux Regulon AEQU_0498 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0505 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0508 SM00220 Serine/Threonine protein kinases, catalytic domain AEQU_0509 SM00382 ATPases associated with a variety of cellular activities AEQU_0513 SM00947 Carbonic anhydrase AEQU_0517 SM00244 prohibitin homologues AEQU_0518 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEQU_0519 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0535 SM00387 Histidine kinase-like ATPases AEQU_0535 SM00388 His Kinase A (phosphoacceptor) domain AEQU_0535 SM00448 cheY-homologous receiver domain AEQU_0538 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0541 SM00650 Ribosomal RNA adenine dimethylases AEQU_0544 SM00341 Helicase and RNase D C-terminal AEQU_0544 SM00487 DEAD-like helicases superfamily AEQU_0544 SM00490 helicase superfamily c-terminal domain AEQU_0544 SM00956 AEQU_0544 AEQU_0545 SM01329 AEQU_0545 AEQU_0549 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEQU_0551 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0558 SM00382 ATPases associated with a variety of cellular activities AEQU_0565 SM00900 AEQU_0565 AEQU_0568 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_0571 SM00382 ATPases associated with a variety of cellular activities AEQU_0574 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AEQU_0580 SM00487 DEAD-like helicases superfamily AEQU_0585 SM00732 Likely ribonuclease with RNase H fold. AEQU_0600 SM00421 helix_turn_helix, Lux Regulon AEQU_0601 SM00841 Elongation factor P, C-terminal AEQU_0601 SM01185 AEQU_0601 AEQU_0603 SM00421 helix_turn_helix, Lux Regulon AEQU_0608 SM00878 Biotin carboxylase C-terminal domain AEQU_0612 SM00861 Transketolase, pyrimidine binding domain AEQU_0615 SM00938 Nitrogen regulatory protein P-II AEQU_0620 SM00316 Ribosomal protein S1-like RNA-binding domain AEQU_0622 SM00421 helix_turn_helix, Lux Regulon AEQU_0627 SM00487 DEAD-like helicases superfamily AEQU_0627 SM00490 helicase superfamily c-terminal domain AEQU_0635 SM00873 B3/4 domain AEQU_0635 SM00874 tRNA synthetase B5 domain AEQU_0635 SM00896 Ferredoxin-fold anticodon binding domain AEQU_0639 SM00388 His Kinase A (phosphoacceptor) domain AEQU_0642 SM00292 breast cancer carboxy-terminal domain AEQU_0642 SM00532 Ligase N family AEQU_0644 SM00047 Lysozyme subfamily 2 AEQU_0644 SM00740 AEQU_0644 AEQU_0649 SM00382 ATPases associated with a variety of cellular activities AEQU_0670 SM00957 SecA DEAD-like domain AEQU_0670 SM00958 SecA preprotein cross-linking domain AEQU_0701 SM00903 Flavin reductase like domain AEQU_0709 SM00421 helix_turn_helix, Lux Regulon AEQU_0712 SM00421 helix_turn_helix, Lux Regulon AEQU_0715 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_0718 SM00382 ATPases associated with a variety of cellular activities AEQU_0720 SM00382 ATPases associated with a variety of cellular activities AEQU_0721 SM00382 ATPases associated with a variety of cellular activities AEQU_0731 SM00382 ATPases associated with a variety of cellular activities AEQU_0745 SM00382 ATPases associated with a variety of cellular activities AEQU_0751 SM00481 DNA polymerase alpha chain like domain AEQU_0762 SM00845 GatB domain AEQU_0770 SM00448 cheY-homologous receiver domain AEQU_0770 SM00862 Transcriptional regulatory protein, C terminal AEQU_0771 SM00387 Histidine kinase-like ATPases AEQU_0771 SM00388 His Kinase A (phosphoacceptor) domain AEQU_0779 SM00917 LeuA allosteric (dimerisation) domain AEQU_0784 SM00836 DALR anticodon binding domain AEQU_0784 SM01016 Arginyl tRNA synthetase N terminal dom AEQU_0797 SM00382 ATPases associated with a variety of cellular activities AEQU_0801 SM00421 helix_turn_helix, Lux Regulon AEQU_0802 SM00900 AEQU_0802 AEQU_0807 SM00363 S4 RNA-binding domain AEQU_0812 SM00387 Histidine kinase-like ATPases AEQU_0812 SM00388 His Kinase A (phosphoacceptor) domain AEQU_0812 SM00448 cheY-homologous receiver domain AEQU_0817 SM00563 Phosphate acyltransferases AEQU_0820 SM00382 ATPases associated with a variety of cellular activities AEQU_0821 SM01207 AEQU_0821 AEQU_0824 SM00387 Histidine kinase-like ATPases AEQU_0824 SM00388 His Kinase A (phosphoacceptor) domain AEQU_0824 SM00448 cheY-homologous receiver domain AEQU_0834 SM01120 AEQU_0834 AEQU_0834 SM01121 AEQU_0834 AEQU_0835 SM00487 DEAD-like helicases superfamily AEQU_0835 SM00490 helicase superfamily c-terminal domain AEQU_0842 SM00358 Double-stranded RNA binding motif AEQU_0842 SM00535 Ribonuclease III family AEQU_0843 SM00968 SMC proteins Flexible Hinge Domain AEQU_0850 SM00450 Rhodanese Homology Domain AEQU_0853 SM00996 S-adenosyl-L-homocysteine hydrolase AEQU_0853 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AEQU_0857 SM00062 Bacterial periplasmic substrate-binding proteins AEQU_0859 SM00382 ATPases associated with a variety of cellular activities AEQU_0860 SM01264 AEQU_0860 AEQU_0867 SM00487 DEAD-like helicases superfamily AEQU_0867 SM00490 helicase superfamily c-terminal domain AEQU_0871 SM00046 Diacylglycerol kinase catalytic domain (presumed) AEQU_0874 SM00028 Tetratricopeptide repeats AEQU_0875 SM00562 AEQU_0875 AEQU_0886 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_0890 SM00100 Cyclic nucleotide-monophosphate binding domain AEQU_0890 SM00419 helix_turn_helix, cAMP Regulatory protein AEQU_0893 SM00244 prohibitin homologues AEQU_0897 SM00382 ATPases associated with a variety of cellular activities AEQU_0905 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AEQU_0913 SM00910 AEQU_0913 AEQU_0914 SM00671 Sel1-like repeats. AEQU_0923 SM00900 AEQU_0923 AEQU_0924 SM00421 helix_turn_helix, Lux Regulon AEQU_0929 SM00917 LeuA allosteric (dimerisation) domain AEQU_0930 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0938 SM00893 Electron transfer flavoprotein domain AEQU_0939 SM00893 Electron transfer flavoprotein domain AEQU_0942 SM00849 Metallo-beta-lactamase superfamily AEQU_0948 SM00900 AEQU_0948 AEQU_0949 SM00530 Helix-turn-helix XRE-family like proteins AEQU_0955 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_0956 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_0963 SM00322 K homology RNA-binding domain AEQU_0969 SM00904 Riboflavin kinase AEQU_0971 SM00465 GIY-YIG type nucleases (URI domain) AEQU_0975 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AEQU_0992 SM00046 Diacylglycerol kinase catalytic domain (presumed) AEQU_0993 SM00341 Helicase and RNase D C-terminal AEQU_0993 SM00474 3'-5' exonuclease AEQU_0998 SM00900 AEQU_0998 AEQU_0999 SM00421 helix_turn_helix, Lux Regulon AEQU_1008 SM00363 S4 RNA-binding domain AEQU_1010 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_1015 SM00421 helix_turn_helix, Lux Regulon AEQU_1016 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_1018 SM00421 helix_turn_helix, Lux Regulon AEQU_1028 SM01208 AEQU_1028 AEQU_1032 SM00240 Forkhead associated domain AEQU_1056 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_1059 SM00322 K homology RNA-binding domain AEQU_1059 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEQU_1061 SM00382 ATPases associated with a variety of cellular activities AEQU_1063 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_1066 SM00843 AEQU_1066 AEQU_1067 SM00849 Metallo-beta-lactamase superfamily AEQU_1068 SM01130 AEQU_1068 AEQU_1070 SM00316 Ribosomal protein S1-like RNA-binding domain AEQU_1070 SM00322 K homology RNA-binding domain AEQU_1071 SM01387 AEQU_1071 AEQU_1073 SM00740 AEQU_1073 AEQU_1078 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_1081 SM00271 DnaJ molecular chaperone homology domain AEQU_1082 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_1087 SM00838 Elongation factor G C-terminus AEQU_1089 SM00849 Metallo-beta-lactamase superfamily AEQU_1091 SM00849 Metallo-beta-lactamase superfamily AEQU_1092 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AEQU_1093 SM00981 AEQU_1093 AEQU_1094 SM01409 AEQU_1094 AEQU_1095 SM00072 Guanylate kinase homologues. AEQU_1097 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AEQU_1100 SM00851 MGS-like domain AEQU_1100 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AEQU_1101 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AEQU_1102 SM00382 ATPases associated with a variety of cellular activities AEQU_1119 SM00530 Helix-turn-helix XRE-family like proteins AEQU_1123 SM00400 zinc finger AEQU_1123 SM00493 AEQU_1123 AEQU_1126 SM00421 helix_turn_helix, Lux Regulon AEQU_1136 SM00937 AEQU_1136 AEQU_1141 SM00421 helix_turn_helix, Lux Regulon AEQU_1147 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AEQU_1151 SM00382 ATPases associated with a variety of cellular activities AEQU_1151 SM00994 ClpX C4-type zinc finger AEQU_1151 SM01086 C-terminal, D2-small domain, of ClpB protein AEQU_1161 SM00646 AEQU_1161 AEQU_1193 SM00487 DEAD-like helicases superfamily AEQU_1196 SM00480 DNA polymerase III beta subunit AEQU_1207 SM00857 Resolvase, N terminal domain AEQU_1208 SM00981 AEQU_1208 AEQU_1210 SM00448 cheY-homologous receiver domain AEQU_1210 SM00862 Transcriptional regulatory protein, C terminal AEQU_1211 SM00387 Histidine kinase-like ATPases AEQU_1211 SM00388 His Kinase A (phosphoacceptor) domain AEQU_1213 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1215 SM00421 helix_turn_helix, Lux Regulon AEQU_1217 SM00487 DEAD-like helicases superfamily AEQU_1217 SM00490 helicase superfamily c-terminal domain AEQU_1231 SM00487 DEAD-like helicases superfamily AEQU_1231 SM00490 helicase superfamily c-terminal domain AEQU_1231 SM00982 AEQU_1231 AEQU_1231 SM01058 CarD-like/TRCF domain AEQU_1232 SM00478 endonuclease III AEQU_1244 SM00478 endonuclease III AEQU_1247 SM00382 ATPases associated with a variety of cellular activities AEQU_1248 SM00382 ATPases associated with a variety of cellular activities AEQU_1265 SM00382 ATPases associated with a variety of cellular activities AEQU_1266 SM00382 ATPases associated with a variety of cellular activities AEQU_1270 SM00382 ATPases associated with a variety of cellular activities AEQU_1270 SM00962 SRP54-type protein, GTPase domain AEQU_1270 SM00963 SRP54-type protein, helical bundle domain AEQU_1271 SM00382 ATPases associated with a variety of cellular activities AEQU_1271 SM00962 SRP54-type protein, GTPase domain AEQU_1271 SM00963 SRP54-type protein, helical bundle domain AEQU_1275 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1276 SM00244 prohibitin homologues AEQU_1279 SM00955 AEQU_1279 AEQU_1280 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AEQU_1280 SM00245 tail specific protease AEQU_1282 SM00382 ATPases associated with a variety of cellular activities AEQU_1283 SM00861 Transketolase, pyrimidine binding domain AEQU_1285 SM00635 Bacterial Ig-like domain 2 AEQU_1289 SM00937 AEQU_1289 AEQU_1290 SM00957 SecA DEAD-like domain AEQU_1290 SM00958 SecA preprotein cross-linking domain AEQU_1295 SM01043 Bacterial transcriptional activator domain AEQU_1297 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEQU_1300 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AEQU_1308 SM00421 helix_turn_helix, Lux Regulon AEQU_1309 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AEQU_1309 SM00475 5'-3' exonuclease AEQU_1309 SM00482 DNA polymerase A domain AEQU_1310 SM00862 Transcriptional regulatory protein, C terminal AEQU_1311 SM01230 AEQU_1311 AEQU_1326 SM00357 Cold shock protein domain AEQU_1326 SM00382 ATPases associated with a variety of cellular activities AEQU_1326 SM00959 Rho termination factor, N-terminal domain AEQU_1333 SM00530 Helix-turn-helix XRE-family like proteins AEQU_1343 SM01001 AIR carboxylase AEQU_1344 SM00422 helix_turn_helix, mercury resistance AEQU_1364 SM00919 Malic enzyme, NAD binding domain AEQU_1364 SM01274 AEQU_1364 AEQU_1368 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AEQU_1368 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AEQU_1368 SM00493 AEQU_1368 AEQU_1373 SM00530 Helix-turn-helix XRE-family like proteins AEQU_1374 SM00422 helix_turn_helix, mercury resistance AEQU_1377 SM00062 Bacterial periplasmic substrate-binding proteins AEQU_1378 SM00382 ATPases associated with a variety of cellular activities AEQU_1382 SM00357 Cold shock protein domain AEQU_1384 SM00382 ATPases associated with a variety of cellular activities AEQU_1385 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AEQU_1389 SM00421 helix_turn_helix, Lux Regulon AEQU_1392 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_1393 SM00421 helix_turn_helix, Lux Regulon AEQU_1397 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1399 SM00382 ATPases associated with a variety of cellular activities AEQU_1412 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AEQU_1418 SM00864 Tubulin/FtsZ family, GTPase domain AEQU_1418 SM00865 Tubulin/FtsZ family, C-terminal domain AEQU_1433 SM00870 AEQU_1433 AEQU_1436 SM00421 helix_turn_helix, Lux Regulon AEQU_1444 SM00649 Ribosomal protein L11/L12 AEQU_1445 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AEQU_1450 SM00849 Metallo-beta-lactamase superfamily AEQU_1459 SM00890 Domain of unknown function AEQU_1472 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AEQU_1473 SM01374 AEQU_1473 AEQU_1477 SM00322 K homology RNA-binding domain AEQU_1480 SM01382 AEQU_1480 AEQU_1480 SM01383 AEQU_1480 AEQU_1483 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_1484 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_1487 SM00382 ATPases associated with a variety of cellular activities AEQU_1488 SM00421 helix_turn_helix, Lux Regulon AEQU_1492 SM00421 helix_turn_helix, Lux Regulon AEQU_1498 SM01403 AEQU_1498 AEQU_1499 SM00838 Elongation factor G C-terminus AEQU_1499 SM00889 Elongation factor G, domain IV AEQU_1502 SM00421 helix_turn_helix, Lux Regulon AEQU_1508 SM01131 AEQU_1508 AEQU_1511 SM00062 Bacterial periplasmic substrate-binding proteins AEQU_1515 SM00363 S4 RNA-binding domain AEQU_1517 SM00859 Semialdehyde dehydrogenase, NAD binding domain AEQU_1523 SM00849 Metallo-beta-lactamase superfamily AEQU_1524 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEQU_1524 SM00954 Region found in RelA / SpoT proteins AEQU_1525 SM00487 DEAD-like helicases superfamily AEQU_1525 SM00490 helicase superfamily c-terminal domain AEQU_1532 SM00382 ATPases associated with a variety of cellular activities AEQU_1535 SM01400 AEQU_1535 AEQU_1546 SM00986 Uracil DNA glycosylase superfamily AEQU_1546 SM00987 UreE urease accessory protein, C-terminal domain AEQU_1547 SM01005 Alanine racemase, C-terminal domain AEQU_1548 SM00852 Probable molybdopterin binding domain AEQU_1549 SM00852 Probable molybdopterin binding domain AEQU_1550 SM00382 ATPases associated with a variety of cellular activities AEQU_1554 SM01192 AEQU_1554 AEQU_1554 SM01193 AEQU_1554 AEQU_1561 SM00662 RNA polymerases D AEQU_1562 SM00363 S4 RNA-binding domain AEQU_1562 SM01390 AEQU_1562 AEQU_1566 SM00316 Ribosomal protein S1-like RNA-binding domain AEQU_1569 SM00421 helix_turn_helix, Lux Regulon AEQU_1581 SM00883 Chaperonin 10 Kd subunit AEQU_1582 SM00421 helix_turn_helix, Lux Regulon AEQU_1582 SM00448 cheY-homologous receiver domain AEQU_1600 SM00244 prohibitin homologues AEQU_1601 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEQU_1603 SM00448 cheY-homologous receiver domain AEQU_1603 SM00862 Transcriptional regulatory protein, C terminal AEQU_1604 SM00387 Histidine kinase-like ATPases AEQU_1604 SM00388 His Kinase A (phosphoacceptor) domain AEQU_1616 SM00448 cheY-homologous receiver domain AEQU_1616 SM00862 Transcriptional regulatory protein, C terminal AEQU_1628 SM00382 ATPases associated with a variety of cellular activities AEQU_1634 SM00382 ATPases associated with a variety of cellular activities AEQU_1638 SM00518 AP endonuclease family 2 AEQU_1648 SM00421 helix_turn_helix, Lux Regulon AEQU_1664 SM00487 DEAD-like helicases superfamily AEQU_1664 SM00490 helicase superfamily c-terminal domain AEQU_1666 SM00421 helix_turn_helix, Lux Regulon AEQU_1669 SM00481 DNA polymerase alpha chain like domain AEQU_1670 SM00382 ATPases associated with a variety of cellular activities AEQU_1672 SM00382 ATPases associated with a variety of cellular activities AEQU_1679 SM00382 ATPases associated with a variety of cellular activities AEQU_1683 SM00487 DEAD-like helicases superfamily AEQU_1683 SM00490 helicase superfamily c-terminal domain AEQU_1686 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_1688 SM00382 ATPases associated with a variety of cellular activities AEQU_1692 SM00849 Metallo-beta-lactamase superfamily AEQU_1694 SM00387 Histidine kinase-like ATPases AEQU_1694 SM00388 His Kinase A (phosphoacceptor) domain AEQU_1694 SM00448 cheY-homologous receiver domain AEQU_1700 SM00014 Acid phosphatase homologues AEQU_1702 SM00986 Uracil DNA glycosylase superfamily AEQU_1702 SM00987 UreE urease accessory protein, C-terminal domain AEQU_1704 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEQU_1710 SM00530 Helix-turn-helix XRE-family like proteins AEQU_1715 SM00900 AEQU_1715 AEQU_1716 SM00450 Rhodanese Homology Domain AEQU_1719 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEQU_1724 SM00450 Rhodanese Homology Domain AEQU_1731 SM00530 Helix-turn-helix XRE-family like proteins AEQU_1735 SM00421 helix_turn_helix, Lux Regulon AEQU_1745 SM00822 AEQU_1745 AEQU_1757 SM00487 DEAD-like helicases superfamily AEQU_1771 SM00450 Rhodanese Homology Domain AEQU_1772 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AEQU_1779 SM00421 helix_turn_helix, Lux Regulon AEQU_1785 SM01329 AEQU_1785 AEQU_1795 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1797 SM00448 cheY-homologous receiver domain AEQU_1797 SM00862 Transcriptional regulatory protein, C terminal AEQU_1798 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEQU_1798 SM00387 Histidine kinase-like ATPases AEQU_1798 SM00388 His Kinase A (phosphoacceptor) domain AEQU_1802 SM00529 Helix-turn-helix diphteria tox regulatory element AEQU_1805 SM00899 AEQU_1805 AEQU_1806 SM00899 AEQU_1806 AEQU_1820 SM00858 AEQU_1820 AEQU_1823 SM00382 ATPases associated with a variety of cellular activities AEQU_1825 SM00421 helix_turn_helix, Lux Regulon AEQU_1825 SM00448 cheY-homologous receiver domain AEQU_1826 SM00342 helix_turn_helix, arabinose operon control protein AEQU_1835 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1836 SM00421 helix_turn_helix, Lux Regulon AEQU_1837 SM00421 helix_turn_helix, Lux Regulon AEQU_1846 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1851 SM00382 ATPases associated with a variety of cellular activities AEQU_1852 SM00345 helix_turn_helix gluconate operon transcriptional repressor AEQU_1853 SM00382 ATPases associated with a variety of cellular activities AEQU_1855 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_1858 SM00382 ATPases associated with a variety of cellular activities AEQU_1859 SM00387 Histidine kinase-like ATPases AEQU_1859 SM00388 His Kinase A (phosphoacceptor) domain AEQU_1860 SM00448 cheY-homologous receiver domain AEQU_1860 SM00862 Transcriptional regulatory protein, C terminal AEQU_1867 SM00091 PAS domain AEQU_1867 SM00387 Histidine kinase-like ATPases AEQU_1867 SM00388 His Kinase A (phosphoacceptor) domain AEQU_1867 SM00448 cheY-homologous receiver domain AEQU_1873 SM00116 Domain in cystathionine beta-synthase and other proteins. AEQU_1873 SM01240 AEQU_1873 AEQU_1882 SM00421 helix_turn_helix, Lux Regulon AEQU_1890 SM00448 cheY-homologous receiver domain AEQU_1890 SM00862 Transcriptional regulatory protein, C terminal AEQU_1891 SM00387 Histidine kinase-like ATPases AEQU_1891 SM00388 His Kinase A (phosphoacceptor) domain AEQU_1894 SM00421 helix_turn_helix, Lux Regulon AEQU_1901 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1907 SM00421 helix_turn_helix, Lux Regulon AEQU_1913 SM00387 Histidine kinase-like ATPases AEQU_1913 SM00388 His Kinase A (phosphoacceptor) domain AEQU_1915 SM00382 ATPases associated with a variety of cellular activities AEQU_1916 SM00448 cheY-homologous receiver domain AEQU_1916 SM00862 Transcriptional regulatory protein, C terminal AEQU_1918 SM00421 helix_turn_helix, Lux Regulon AEQU_1920 SM01230 AEQU_1920 AEQU_1926 SM01007 Class II Aldolase and Adducin N-terminal domain AEQU_1948 SM00421 helix_turn_helix, Lux Regulon AEQU_1953 SM00421 helix_turn_helix, Lux Regulon AEQU_1958 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_1963 SM00421 helix_turn_helix, Lux Regulon AEQU_1972 SM00530 Helix-turn-helix XRE-family like proteins AEQU_1983 SM01133 AEQU_1983 AEQU_1993 SM00220 Serine/Threonine protein kinases, catalytic domain AEQU_1994 SM00518 AP endonuclease family 2 AEQU_1997 SM00387 Histidine kinase-like ATPases AEQU_2004 SM01211 AEQU_2004 AEQU_2007 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEQU_2007 SM00387 Histidine kinase-like ATPases AEQU_2007 SM00388 His Kinase A (phosphoacceptor) domain AEQU_2008 SM00448 cheY-homologous receiver domain AEQU_2008 SM00862 Transcriptional regulatory protein, C terminal AEQU_2014 SM00421 helix_turn_helix, Lux Regulon AEQU_2016 SM00998 Adenylosuccinate lyase C-terminus AEQU_2021 SM00116 Domain in cystathionine beta-synthase and other proteins. AEQU_2021 SM00924 MgtE intracellular N domain AEQU_2034 SM00100 Cyclic nucleotide-monophosphate binding domain AEQU_2034 SM00419 helix_turn_helix, cAMP Regulatory protein AEQU_2042 SM00382 ATPases associated with a variety of cellular activities AEQU_2058 SM00421 helix_turn_helix, Lux Regulon AEQU_2061 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEQU_2061 SM00267 diguanylate cyclase AEQU_2071 SM00849 Metallo-beta-lactamase superfamily AEQU_2072 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_2073 SM00530 Helix-turn-helix XRE-family like proteins AEQU_2078 SM00530 Helix-turn-helix XRE-family like proteins AEQU_2079 SM00342 helix_turn_helix, arabinose operon control protein AEQU_2079 SM00871 Bacterial transcription activator, effector binding domain AEQU_2095 SM00422 helix_turn_helix, mercury resistance AEQU_2100 SM00421 helix_turn_helix, Lux Regulon AEQU_2116 SM00421 helix_turn_helix, Lux Regulon AEQU_2117 SM00900 AEQU_2117 AEQU_2122 SM00382 ATPases associated with a variety of cellular activities AEQU_2125 SM00448 cheY-homologous receiver domain AEQU_2125 SM00862 Transcriptional regulatory protein, C terminal AEQU_2126 SM00387 Histidine kinase-like ATPases AEQU_2126 SM00388 His Kinase A (phosphoacceptor) domain AEQU_2132 SM00530 Helix-turn-helix XRE-family like proteins AEQU_2138 SM00382 ATPases associated with a variety of cellular activities AEQU_2149 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AEQU_2151 SM00382 ATPases associated with a variety of cellular activities AEQU_2157 SM00460 Transglutaminase/protease-like homologues AEQU_2158 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AEQU_2158 SM00387 Histidine kinase-like ATPases AEQU_2158 SM00388 His Kinase A (phosphoacceptor) domain AEQU_2158 SM00448 cheY-homologous receiver domain AEQU_2160 SM00267 diguanylate cyclase AEQU_2160 SM00448 cheY-homologous receiver domain AEQU_2160 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AEQU_2163 SM00448 cheY-homologous receiver domain AEQU_2163 SM00862 Transcriptional regulatory protein, C terminal AEQU_2164 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AEQU_2164 SM00387 Histidine kinase-like ATPases AEQU_2164 SM00388 His Kinase A (phosphoacceptor) domain AEQU_2167 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AEQU_2173 SM01001 AIR carboxylase AEQU_2180 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_2181 SM00062 Bacterial periplasmic substrate-binding proteins AEQU_2181 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AEQU_2183 SM00382 ATPases associated with a variety of cellular activities AEQU_2189 SM00240 Forkhead associated domain AEQU_2190 SM00240 Forkhead associated domain AEQU_2191 SM00331 Sigma factor PP2C-like phosphatases AEQU_2191 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AEQU_2193 SM00220 Serine/Threonine protein kinases, catalytic domain AEQU_2193 SM00740 AEQU_2193 AEQU_2196 SM00387 Histidine kinase-like ATPases AEQU_2196 SM00388 His Kinase A (phosphoacceptor) domain AEQU_2197 SM00448 cheY-homologous receiver domain AEQU_2197 SM00862 Transcriptional regulatory protein, C terminal AEQU_2200 SM00382 ATPases associated with a variety of cellular activities AEQU_2214 SM00382 ATPases associated with a variety of cellular activities AEQU_2222 SM00876 Biotin and Thiamin Synthesis associated domain AEQU_2223 SM00729 Elongator protein 3, MiaB family, Radical SAM AEQU_2223 SM00876 Biotin and Thiamin Synthesis associated domain AEQU_2224 SM00902 Iron hydrogenase small subunit AEQU_2225 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AEQU_2233 SM00893 Electron transfer flavoprotein domain AEQU_2235 SM00421 helix_turn_helix, Lux Regulon AEQU_2240 SM00347 helix_turn_helix multiple antibiotic resistance protein AEQU_2243 SM00421 helix_turn_helix, Lux Regulon AEQU_2250 SM00116 Domain in cystathionine beta-synthase and other proteins. AEQU_2251 SM00116 Domain in cystathionine beta-synthase and other proteins. AEQU_2251 SM01091 Transporter associated domain AEQU_2254 SM00838 Elongation factor G C-terminus AEQU_2255 SM00271 DnaJ molecular chaperone homology domain AEQU_2259 SM00327 von Willebrand factor (vWF) type A domain AEQU_2268 SM00710 Parallel beta-helix repeats AEQU_2277 SM00434 DNA Topoisomerase IV AEQU_2278 SM00387 Histidine kinase-like ATPases AEQU_2278 SM00433 TopoisomeraseII AEQU_2280 SM00480 DNA polymerase III beta subunit AEQU_2281 SM00387 Histidine kinase-like ATPases